Query 003878
Match_columns 789
No_of_seqs 430 out of 4131
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 13:37:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003878.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003878hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1770 PtrB Protease II [Amin 100.0 3E-109 6E-114 897.5 69.1 661 12-785 5-681 (682)
2 KOG2237 Predicted serine prote 100.0 6E-108 1E-112 877.9 52.0 706 9-788 2-711 (712)
3 PRK10115 protease 2; Provision 100.0 3E-99 6E-104 882.9 84.0 667 12-788 1-681 (686)
4 COG1505 Serine proteases of th 100.0 2.3E-94 5.1E-99 770.9 51.7 635 31-784 2-648 (648)
5 PF02897 Peptidase_S9_N: Proly 100.0 1.7E-53 3.6E-58 477.9 50.8 404 13-495 1-413 (414)
6 COG1506 DAP2 Dipeptidyl aminop 100.0 9.1E-43 2E-47 405.9 51.7 386 364-785 221-619 (620)
7 KOG2281 Dipeptidyl aminopeptid 100.0 2.5E-31 5.3E-36 285.0 33.4 333 419-781 517-866 (867)
8 PF00326 Peptidase_S9: Prolyl 100.0 2.6E-32 5.6E-37 277.7 19.8 209 554-785 1-212 (213)
9 KOG2100 Dipeptidyl aminopeptid 100.0 5.3E-28 1.1E-32 283.8 52.7 387 366-786 347-751 (755)
10 TIGR02821 fghA_ester_D S-formy 99.8 5.4E-19 1.2E-23 186.8 23.1 245 508-783 13-275 (275)
11 PLN02442 S-formylglutathione h 99.8 3.7E-19 8E-24 188.5 20.8 246 507-784 17-282 (283)
12 PRK10566 esterase; Provisional 99.8 4.4E-19 9.5E-24 184.9 20.1 232 521-783 11-249 (249)
13 TIGR02800 propeller_TolB tol-p 99.8 3.3E-18 7.2E-23 192.5 26.0 296 53-458 118-416 (417)
14 PRK13604 luxD acyl transferase 99.8 2E-18 4.4E-23 179.6 21.7 218 512-765 13-249 (307)
15 PRK10162 acetyl esterase; Prov 99.8 1.5E-17 3.3E-22 179.2 26.5 238 506-784 55-317 (318)
16 PF05448 AXE1: Acetyl xylan es 99.8 3.6E-18 7.7E-23 182.2 16.5 243 504-782 52-320 (320)
17 PRK05077 frsA fermentation/res 99.8 2.6E-17 5.5E-22 183.0 23.6 237 505-783 165-413 (414)
18 PLN02298 hydrolase, alpha/beta 99.8 6.2E-17 1.3E-21 176.1 25.2 255 502-787 26-322 (330)
19 PRK01029 tolB translocation pr 99.8 4E-16 8.6E-21 174.6 30.1 269 90-461 146-425 (428)
20 PRK04792 tolB translocation pr 99.8 4.6E-16 9.9E-21 175.5 29.7 260 92-460 184-446 (448)
21 TIGR01840 esterase_phb esteras 99.7 3E-17 6.6E-22 166.6 16.7 194 524-735 1-197 (212)
22 PRK05137 tolB translocation pr 99.7 1.4E-15 3.1E-20 171.6 30.6 237 208-487 160-415 (435)
23 COG3458 Acetyl esterase (deace 99.7 6.5E-17 1.4E-21 159.2 16.9 232 501-764 49-304 (321)
24 PRK03629 tolB translocation pr 99.7 1.9E-15 4.2E-20 169.7 31.2 261 91-460 164-427 (429)
25 PRK05137 tolB translocation pr 99.7 1.8E-15 3.9E-20 170.8 30.9 260 91-460 166-432 (435)
26 PRK02889 tolB translocation pr 99.7 1.8E-15 4E-20 170.0 29.5 259 91-460 164-424 (427)
27 PRK04043 tolB translocation pr 99.7 2.2E-15 4.9E-20 167.5 29.5 252 92-454 157-415 (419)
28 PF01738 DLH: Dienelactone hyd 99.7 2.8E-17 6.2E-22 167.7 13.0 205 522-783 1-218 (218)
29 PRK01029 tolB translocation pr 99.7 3.6E-15 7.7E-20 167.0 29.7 260 135-494 140-411 (428)
30 COG0657 Aes Esterase/lipase [L 99.7 1E-15 2.3E-20 165.1 23.0 228 514-781 57-309 (312)
31 COG1647 Esterase/lipase [Gener 99.7 1.3E-16 2.8E-21 153.3 14.0 217 529-780 6-242 (243)
32 PRK00178 tolB translocation pr 99.7 7.9E-15 1.7E-19 165.6 30.7 261 91-460 163-427 (430)
33 COG0412 Dienelactone hydrolase 99.7 1.6E-15 3.5E-20 155.2 21.3 216 509-784 3-235 (236)
34 PHA02857 monoglyceride lipase; 99.7 1.9E-15 4.1E-20 160.1 22.4 233 513-783 5-274 (276)
35 PRK04922 tolB translocation pr 99.7 1.3E-14 2.8E-19 163.7 29.5 262 90-460 167-432 (433)
36 PLN02385 hydrolase; alpha/beta 99.7 2.2E-15 4.7E-20 165.2 21.9 248 506-784 59-347 (349)
37 PRK04043 tolB translocation pr 99.7 2.7E-14 5.9E-19 158.8 29.1 203 238-486 191-402 (419)
38 PRK05371 x-prolyl-dipeptidyl a 99.7 1.1E-14 2.5E-19 172.2 25.3 259 500-785 162-522 (767)
39 PRK03629 tolB translocation pr 99.7 5.6E-14 1.2E-18 157.9 29.2 206 237-486 201-408 (429)
40 PRK11460 putative hydrolase; P 99.6 7.9E-15 1.7E-19 150.7 19.0 186 536-784 14-210 (232)
41 PRK01742 tolB translocation pr 99.6 1.2E-13 2.7E-18 155.4 29.6 257 89-460 167-425 (429)
42 PF07859 Abhydrolase_3: alpha/ 99.6 2.3E-15 5E-20 152.7 13.7 185 541-761 1-209 (211)
43 PRK02889 tolB translocation pr 99.6 9.8E-14 2.1E-18 156.0 27.9 235 208-486 158-405 (427)
44 PRK10749 lysophospholipase L2; 99.6 1.2E-14 2.7E-19 157.9 19.9 245 508-782 30-329 (330)
45 PRK04922 tolB translocation pr 99.6 1.5E-13 3.3E-18 154.9 28.7 206 237-486 206-413 (433)
46 KOG1455 Lysophospholipase [Lip 99.6 3.6E-14 7.7E-19 143.6 20.4 244 508-782 27-312 (313)
47 KOG1515 Arylacetamide deacetyl 99.6 8.4E-14 1.8E-18 147.8 23.0 244 508-782 63-335 (336)
48 PRK00178 tolB translocation pr 99.6 3.8E-13 8.1E-18 152.0 28.5 206 237-486 201-408 (430)
49 PRK04792 tolB translocation pr 99.6 2.7E-13 5.8E-18 153.0 26.9 235 208-486 177-427 (448)
50 KOG1552 Predicted alpha/beta h 99.6 3.6E-14 7.7E-19 141.0 16.1 216 509-783 36-253 (258)
51 PLN02652 hydrolase; alpha/beta 99.6 1.5E-13 3.4E-18 151.6 22.9 242 507-786 109-391 (395)
52 PF02230 Abhydrolase_2: Phosph 99.6 1.1E-13 2.3E-18 141.0 17.0 190 536-783 12-216 (216)
53 PF10503 Esterase_phd: Esteras 99.5 1.1E-13 2.4E-18 138.7 16.2 196 522-735 1-198 (220)
54 TIGR00976 /NonD putative hydro 99.5 2.3E-13 4.9E-18 157.9 19.1 135 514-658 2-137 (550)
55 KOG4391 Predicted alpha/beta h 99.5 2E-13 4.3E-18 130.0 14.6 233 504-785 50-285 (300)
56 PF00930 DPPIV_N: Dipeptidyl p 99.5 4.1E-12 8.9E-17 139.3 26.1 322 89-476 3-353 (353)
57 PRK01742 tolB translocation pr 99.5 5.6E-12 1.2E-16 142.0 27.5 199 237-485 206-405 (429)
58 COG2267 PldB Lysophospholipase 99.5 1.6E-12 3.4E-17 138.2 21.0 249 509-784 10-296 (298)
59 PF02129 Peptidase_S15: X-Pro 99.5 1.8E-13 3.9E-18 144.5 12.4 213 517-760 1-271 (272)
60 PLN02511 hydrolase 99.5 1.4E-12 3.1E-17 144.5 20.0 243 507-783 70-366 (388)
61 COG3509 LpqC Poly(3-hydroxybut 99.5 1.7E-12 3.7E-17 130.9 17.8 231 517-782 43-307 (312)
62 TIGR03611 RutD pyrimidine util 99.5 1.1E-12 2.3E-17 136.4 17.3 206 536-780 11-256 (257)
63 PRK10985 putative hydrolase; P 99.5 2.5E-12 5.5E-17 139.4 20.0 241 510-785 33-323 (324)
64 TIGR02800 propeller_TolB tol-p 99.5 2.2E-11 4.7E-16 137.1 28.3 246 140-486 152-399 (417)
65 COG0823 TolB Periplasmic compo 99.4 1.3E-11 2.9E-16 136.4 24.4 238 204-483 148-401 (425)
66 PF06500 DUF1100: Alpha/beta h 99.4 2.8E-12 6E-17 137.8 18.1 237 505-783 162-410 (411)
67 PF12715 Abhydrolase_7: Abhydr 99.4 7.5E-14 1.6E-18 147.0 4.6 144 504-652 84-259 (390)
68 TIGR01607 PST-A Plasmodium sub 99.4 5.3E-12 1.2E-16 137.0 19.1 235 513-780 2-331 (332)
69 PF00930 DPPIV_N: Dipeptidyl p 99.4 5.2E-11 1.1E-15 130.6 26.2 262 140-495 1-325 (353)
70 PRK00870 haloalkane dehalogena 99.4 2.2E-11 4.7E-16 130.8 21.4 129 507-651 20-148 (302)
71 TIGR03343 biphenyl_bphD 2-hydr 99.4 3.7E-12 8.1E-17 135.1 14.6 208 537-780 29-281 (282)
72 PLN00021 chlorophyllase 99.4 3.7E-11 8.1E-16 128.3 22.2 207 520-786 37-287 (313)
73 COG4099 Predicted peptidase [G 99.4 2.9E-12 6.2E-17 127.9 12.3 173 517-755 170-354 (387)
74 PF12695 Abhydrolase_5: Alpha/ 99.4 5.5E-12 1.2E-16 119.4 13.9 145 540-760 1-145 (145)
75 KOG0271 Notchless-like WD40 re 99.4 1.3E-10 2.7E-15 119.2 24.3 276 118-466 139-467 (480)
76 PRK11071 esterase YqiA; Provis 99.4 1.2E-11 2.7E-16 122.8 16.5 182 539-780 2-189 (190)
77 TIGR02427 protocat_pcaD 3-oxoa 99.4 6.9E-12 1.5E-16 129.3 13.6 203 537-779 12-250 (251)
78 TIGR03100 hydr1_PEP hydrolase, 99.4 1.1E-10 2.4E-15 123.3 22.8 235 509-780 3-273 (274)
79 TIGR03056 bchO_mg_che_rel puta 99.3 4.1E-11 9E-16 126.5 19.4 204 537-779 27-277 (278)
80 COG0823 TolB Periplasmic compo 99.3 7.1E-11 1.5E-15 130.7 21.8 244 103-454 171-417 (425)
81 COG2945 Predicted hydrolase of 99.3 2.3E-11 4.9E-16 114.9 14.2 199 509-780 5-205 (210)
82 COG0400 Predicted esterase [Ge 99.3 5E-11 1.1E-15 118.4 17.1 185 535-783 15-206 (207)
83 TIGR01250 pro_imino_pep_2 prol 99.3 6.8E-11 1.5E-15 124.8 18.8 108 537-653 24-131 (288)
84 PLN02872 triacylglycerol lipas 99.3 3.1E-11 6.6E-16 132.9 16.4 146 503-653 39-197 (395)
85 PRK10673 acyl-CoA esterase; Pr 99.3 6.3E-11 1.4E-15 123.6 17.9 206 535-781 13-254 (255)
86 TIGR01249 pro_imino_pep_1 prol 99.3 8E-11 1.7E-15 126.7 18.8 122 512-652 8-129 (306)
87 COG4946 Uncharacterized protei 99.3 3.2E-09 7E-14 111.7 29.5 228 216-495 238-486 (668)
88 PRK03592 haloalkane dehalogena 99.3 2.7E-10 5.8E-15 121.9 22.1 113 517-652 15-127 (295)
89 PLN02824 hydrolase, alpha/beta 99.3 5.3E-11 1.1E-15 127.3 16.6 109 538-653 29-137 (294)
90 COG0429 Predicted hydrolase of 99.3 2.6E-10 5.7E-15 117.4 19.1 237 513-785 54-343 (345)
91 TIGR01738 bioH putative pimelo 99.3 6.3E-11 1.4E-15 121.7 14.8 95 539-652 5-99 (245)
92 PLN02965 Probable pheophorbida 99.3 3.2E-10 7E-15 118.6 19.8 212 540-780 5-251 (255)
93 TIGR02240 PHA_depoly_arom poly 99.3 3E-10 6.5E-15 120.3 19.6 220 516-782 9-266 (276)
94 PRK03204 haloalkane dehalogena 99.2 1.8E-10 3.8E-15 122.7 17.6 103 537-652 33-135 (286)
95 TIGR03695 menH_SHCHC 2-succiny 99.2 1.4E-10 3.1E-15 119.1 16.4 103 539-653 2-105 (251)
96 TIGR03101 hydr2_PEP hydrolase, 99.2 8.7E-10 1.9E-14 114.6 21.7 214 510-757 2-243 (266)
97 PF12697 Abhydrolase_6: Alpha/ 99.2 2.7E-11 5.9E-16 122.6 9.4 186 541-762 1-218 (228)
98 PF08840 BAAT_C: BAAT / Acyl-C 99.2 1.4E-10 3E-15 117.3 14.3 162 600-785 4-213 (213)
99 PLN03087 BODYGUARD 1 domain co 99.2 4.5E-10 9.7E-15 126.0 19.7 125 513-652 180-308 (481)
100 PRK14875 acetoin dehydrogenase 99.2 2.9E-10 6.2E-15 125.8 17.6 103 536-652 129-231 (371)
101 PLN02679 hydrolase, alpha/beta 99.2 4.1E-10 8.8E-15 123.9 18.2 209 538-781 88-356 (360)
102 PRK06489 hypothetical protein; 99.2 4.2E-10 9.1E-15 123.9 17.7 108 538-651 69-187 (360)
103 PLN02894 hydrolase, alpha/beta 99.2 1.3E-09 2.8E-14 121.5 21.6 107 536-652 103-210 (402)
104 TIGR01392 homoserO_Ac_trn homo 99.2 5.9E-10 1.3E-14 122.4 18.7 129 517-652 14-161 (351)
105 PRK00175 metX homoserine O-ace 99.2 6.4E-10 1.4E-14 123.2 16.7 113 537-652 47-181 (379)
106 PRK07581 hypothetical protein; 99.2 3.7E-10 8.1E-15 123.4 14.6 112 537-651 40-157 (339)
107 PF00756 Esterase: Putative es 99.2 6.2E-11 1.3E-15 123.6 8.0 137 518-656 5-153 (251)
108 PRK10439 enterobactin/ferric e 99.2 3.3E-09 7.2E-14 117.5 22.0 218 509-780 181-407 (411)
109 TIGR01836 PHA_synth_III_C poly 99.1 1.4E-09 3E-14 119.3 18.9 122 522-656 48-174 (350)
110 KOG0318 WD40 repeat stress pro 99.1 5.9E-08 1.3E-12 103.8 29.6 267 130-487 58-353 (603)
111 KOG0271 Notchless-like WD40 re 99.1 6.2E-09 1.4E-13 107.0 21.4 242 132-487 116-400 (480)
112 PRK10349 carboxylesterase BioH 99.1 1.1E-09 2.4E-14 114.5 16.7 94 539-651 14-107 (256)
113 TIGR03866 PQQ_ABC_repeats PQQ- 99.1 1.7E-07 3.6E-12 99.7 33.0 244 134-487 33-282 (300)
114 KOG1838 Alpha/beta hydrolase [ 99.1 5.6E-09 1.2E-13 111.7 20.6 241 507-782 92-388 (409)
115 PLN02578 hydrolase 99.1 1.7E-09 3.6E-14 118.9 17.3 98 539-651 87-185 (354)
116 KOG4178 Soluble epoxide hydrol 99.1 9.8E-09 2.1E-13 106.2 20.9 117 515-650 28-145 (322)
117 KOG0279 G protein beta subunit 99.1 4.7E-08 1E-12 97.1 24.6 232 130-470 62-303 (315)
118 KOG3101 Esterase D [General fu 99.1 6.1E-10 1.3E-14 106.0 10.0 239 517-784 24-281 (283)
119 KOG4667 Predicted esterase [Li 99.1 5.7E-09 1.2E-13 100.1 16.6 199 535-767 30-246 (269)
120 KOG4627 Kynurenine formamidase 99.1 4.8E-10 1E-14 106.4 9.1 181 536-760 65-247 (270)
121 PF14583 Pectate_lyase22: Olig 99.1 1.4E-07 3E-12 100.6 28.0 312 135-484 39-383 (386)
122 PF03583 LIP: Secretory lipase 99.0 5.6E-09 1.2E-13 110.7 17.3 196 560-786 19-285 (290)
123 PRK08775 homoserine O-acetyltr 99.0 6.5E-09 1.4E-13 113.7 18.2 74 567-652 98-172 (343)
124 PLN02211 methyl indole-3-aceta 99.0 1.5E-08 3.2E-13 107.1 19.7 107 535-652 15-121 (273)
125 cd00312 Esterase_lipase Estera 99.0 8.9E-10 1.9E-14 126.8 10.7 228 515-762 75-314 (493)
126 KOG0293 WD40 repeat-containing 99.0 2.7E-08 5.8E-13 103.4 19.8 271 133-482 226-511 (519)
127 COG2272 PnbA Carboxylesterase 99.0 1.1E-09 2.3E-14 118.8 9.9 220 514-761 75-311 (491)
128 PF12740 Chlorophyllase2: Chlo 99.0 2.1E-08 4.6E-13 102.0 18.8 116 522-654 4-132 (259)
129 PRK11126 2-succinyl-6-hydroxy- 99.0 1.4E-08 3E-13 105.1 16.4 99 538-652 2-101 (242)
130 cd00200 WD40 WD40 domain, foun 99.0 5.5E-07 1.2E-11 93.6 28.6 259 131-467 9-278 (289)
131 KOG0266 WD40 repeat-containing 99.0 1E-07 2.2E-12 108.2 24.5 233 129-467 201-439 (456)
132 COG0627 Predicted esterase [Ge 99.0 6.9E-09 1.5E-13 109.8 13.8 232 535-786 51-315 (316)
133 PF05728 UPF0227: Uncharacteri 98.9 3E-08 6.5E-13 97.4 16.0 182 540-779 1-186 (187)
134 PLN03084 alpha/beta hydrolase 98.9 3.4E-08 7.4E-13 108.6 18.3 107 537-653 126-232 (383)
135 KOG3043 Predicted hydrolase re 98.9 7.6E-09 1.7E-13 100.4 11.3 188 539-783 40-241 (242)
136 KOG0315 G-protein beta subunit 98.9 3.4E-07 7.3E-12 89.7 21.8 242 133-447 42-297 (311)
137 KOG0318 WD40 repeat stress pro 98.9 6.8E-06 1.5E-10 88.4 33.4 150 304-486 410-562 (603)
138 KOG1454 Predicted hydrolase/ac 98.9 2.5E-08 5.4E-13 107.3 14.4 212 536-782 56-324 (326)
139 PLN02980 2-oxoglutarate decarb 98.8 1E-07 2.2E-12 122.8 21.3 239 522-782 1356-1639(1655)
140 TIGR03866 PQQ_ABC_repeats PQQ- 98.8 2.5E-06 5.4E-11 90.7 28.3 164 238-449 118-290 (300)
141 KOG0272 U4/U6 small nuclear ri 98.8 2E-07 4.4E-12 97.4 18.1 260 131-466 175-446 (459)
142 PRK06765 homoserine O-acetyltr 98.8 1.1E-07 2.4E-12 104.9 16.8 114 536-651 54-194 (389)
143 COG4946 Uncharacterized protei 98.8 4.3E-06 9.4E-11 88.7 27.0 142 304-470 364-508 (668)
144 COG2936 Predicted acyl esteras 98.8 3.6E-08 7.8E-13 109.9 11.9 143 506-658 17-164 (563)
145 TIGR02658 TTQ_MADH_Hv methylam 98.8 1.5E-05 3.3E-10 85.8 31.0 113 366-487 201-333 (352)
146 KOG4409 Predicted hydrolase/ac 98.7 1.7E-07 3.8E-12 97.3 15.0 129 506-653 65-195 (365)
147 PRK05855 short chain dehydroge 98.7 1.5E-07 3.2E-12 110.7 16.1 106 514-638 8-114 (582)
148 PTZ00421 coronin; Provisional 98.7 2.4E-06 5.2E-11 97.1 24.9 214 130-442 74-294 (493)
149 KOG0279 G protein beta subunit 98.7 1.9E-05 4.2E-10 78.9 27.5 197 237-487 66-265 (315)
150 PF03403 PAF-AH_p_II: Platelet 98.7 2.2E-07 4.9E-12 101.9 14.8 127 520-652 84-261 (379)
151 PF00561 Abhydrolase_1: alpha/ 98.7 6.2E-08 1.3E-12 98.8 8.8 78 569-652 1-78 (230)
152 KOG0286 G-protein beta subunit 98.6 2.4E-05 5.1E-10 78.7 25.4 244 130-487 54-306 (343)
153 KOG0266 WD40 repeat-containing 98.6 1.4E-05 3E-10 90.8 27.3 246 131-487 159-412 (456)
154 PF08662 eIF2A: Eukaryotic tra 98.6 3.1E-06 6.6E-11 84.4 19.3 102 237-378 62-163 (194)
155 PF02239 Cytochrom_D1: Cytochr 98.6 1.6E-05 3.5E-10 87.2 26.7 285 134-530 39-338 (369)
156 KOG0291 WD40-repeat-containing 98.6 2.6E-05 5.6E-10 87.4 27.2 214 220-483 283-507 (893)
157 COG4757 Predicted alpha/beta h 98.6 6.9E-07 1.5E-11 87.1 13.2 244 511-779 8-280 (281)
158 PF00135 COesterase: Carboxyle 98.6 9.5E-08 2.1E-12 111.2 8.8 221 515-761 105-344 (535)
159 KOG0291 WD40-repeat-containing 98.6 5.8E-05 1.3E-09 84.7 29.3 241 133-486 309-552 (893)
160 PTZ00420 coronin; Provisional 98.6 1.7E-05 3.8E-10 90.8 26.5 161 237-441 128-296 (568)
161 KOG0772 Uncharacterized conser 98.6 1.1E-05 2.4E-10 86.6 22.4 286 129-469 165-476 (641)
162 KOG2112 Lysophospholipase [Lip 98.6 2E-06 4.2E-11 83.5 15.4 187 539-781 4-203 (206)
163 PF02897 Peptidase_S9_N: Proly 98.6 8.6E-05 1.9E-09 83.5 31.1 263 87-442 132-408 (414)
164 PF06821 Ser_hydrolase: Serine 98.6 3.5E-06 7.7E-11 81.8 17.1 158 541-766 1-159 (171)
165 TIGR01838 PHA_synth_I poly(R)- 98.5 2.2E-06 4.8E-11 97.4 17.5 110 538-655 188-304 (532)
166 KOG0315 G-protein beta subunit 98.5 3.8E-05 8.3E-10 75.6 23.1 198 237-486 43-247 (311)
167 KOG0263 Transcription initiati 98.5 7.8E-06 1.7E-10 92.1 20.6 196 237-485 454-650 (707)
168 KOG0272 U4/U6 small nuclear ri 98.5 2.4E-06 5.2E-11 89.6 14.7 191 131-428 261-452 (459)
169 PRK11028 6-phosphogluconolacto 98.5 8.5E-05 1.8E-09 80.8 27.7 212 238-486 83-308 (330)
170 KOG2624 Triglyceride lipase-ch 98.5 3.7E-06 7.9E-11 91.7 16.2 146 502-655 42-201 (403)
171 KOG1407 WD40 repeat protein [F 98.5 4.4E-05 9.6E-10 75.6 21.8 244 132-487 21-264 (313)
172 KOG0305 Anaphase promoting com 98.5 3.2E-05 6.9E-10 85.5 23.4 250 107-468 199-449 (484)
173 PF10340 DUF2424: Protein of u 98.5 1.9E-06 4.1E-11 92.3 13.3 210 523-761 107-350 (374)
174 PLN00181 protein SPA1-RELATED; 98.4 8.5E-05 1.8E-09 90.7 29.4 196 237-486 535-740 (793)
175 TIGR02658 TTQ_MADH_Hv methylam 98.4 0.00018 4E-09 77.5 27.8 122 307-446 201-338 (352)
176 KOG0293 WD40 repeat-containing 98.4 1.4E-05 3.1E-10 83.6 18.4 220 215-487 237-473 (519)
177 PF14583 Pectate_lyase22: Olig 98.4 0.00035 7.5E-09 75.0 29.3 239 215-495 49-337 (386)
178 cd00707 Pancreat_lipase_like P 98.4 1.2E-06 2.5E-11 92.5 10.5 113 536-653 34-147 (275)
179 KOG0973 Histone transcription 98.4 2.9E-05 6.2E-10 90.6 22.4 267 130-485 68-356 (942)
180 KOG2096 WD40 repeat protein [G 98.4 6.1E-05 1.3E-09 76.6 21.9 262 121-487 77-363 (420)
181 COG2382 Fes Enterochelin ester 98.4 2.3E-06 5E-11 87.8 11.8 194 520-761 80-281 (299)
182 PF08450 SGL: SMP-30/Gluconola 98.4 0.00066 1.4E-08 70.5 30.5 149 300-470 86-245 (246)
183 PF08538 DUF1749: Protein of u 98.4 4.2E-06 9.2E-11 87.0 13.6 216 537-779 32-302 (303)
184 PTZ00420 coronin; Provisional 98.4 0.00045 9.8E-09 79.4 31.3 204 237-486 77-295 (568)
185 KOG1407 WD40 repeat protein [F 98.4 8.2E-05 1.8E-09 73.8 21.4 231 130-472 63-294 (313)
186 COG2819 Predicted hydrolase of 98.4 2.7E-05 5.9E-10 79.0 18.1 140 511-653 12-172 (264)
187 KOG0296 Angio-associated migra 98.3 9.6E-05 2.1E-09 76.5 22.0 203 130-442 63-267 (399)
188 KOG1446 Histone H3 (Lys4) meth 98.3 0.0016 3.5E-08 66.6 30.4 245 132-487 15-265 (311)
189 KOG0275 Conserved WD40 repeat- 98.3 1.3E-05 2.9E-10 81.1 15.1 349 32-490 100-473 (508)
190 KOG0286 G-protein beta subunit 98.3 0.0015 3.3E-08 66.0 29.3 171 274-474 165-337 (343)
191 PRK07868 acyl-CoA synthetase; 98.3 1.6E-05 3.5E-10 99.1 19.4 106 537-654 66-178 (994)
192 PF10282 Lactonase: Lactonase, 98.3 0.0009 2E-08 73.2 30.9 218 238-493 90-331 (345)
193 KOG2055 WD40 repeat protein [G 98.3 0.00019 4.2E-09 76.4 23.8 225 215-486 226-469 (514)
194 KOG4497 Uncharacterized conser 98.3 8.7E-05 1.9E-09 75.7 20.4 128 137-322 14-156 (447)
195 cd00200 WD40 WD40 domain, foun 98.3 0.00017 3.7E-09 74.6 23.9 198 237-487 12-210 (289)
196 COG2706 3-carboxymuconate cycl 98.3 0.0021 4.4E-08 67.3 30.5 173 304-494 149-331 (346)
197 PTZ00421 coronin; Provisional 98.3 0.00091 2E-08 76.2 29.7 205 237-487 78-293 (493)
198 KOG2382 Predicted alpha/beta h 98.2 1.6E-05 3.6E-10 82.7 14.0 227 520-782 36-313 (315)
199 KOG2048 WD40 repeat protein [G 98.2 0.0012 2.6E-08 73.7 28.9 203 301-550 384-595 (691)
200 PRK13616 lipoprotein LpqB; Pro 98.2 5.5E-05 1.2E-09 87.7 19.7 172 133-395 351-530 (591)
201 KOG0263 Transcription initiati 98.2 2.6E-05 5.6E-10 88.0 16.3 195 133-438 453-649 (707)
202 KOG0306 WD40-repeat-containing 98.2 0.0004 8.6E-09 78.1 25.3 270 130-483 372-663 (888)
203 KOG3847 Phospholipase A2 (plat 98.2 1.8E-05 3.9E-10 80.6 13.5 112 535-650 115-272 (399)
204 PF07224 Chlorophyllase: Chlor 98.2 6.1E-06 1.3E-10 82.3 9.9 138 501-655 9-159 (307)
205 KOG2984 Predicted hydrolase [G 98.2 2.4E-06 5.3E-11 81.4 6.7 205 540-781 44-275 (277)
206 PF06342 DUF1057: Alpha/beta h 98.2 9.9E-05 2.2E-09 75.2 18.7 236 509-765 7-284 (297)
207 KOG0273 Beta-transducin family 98.2 0.00042 9.2E-09 74.1 23.9 261 132-471 236-514 (524)
208 KOG1446 Histone H3 (Lys4) meth 98.2 0.00028 6E-09 72.1 21.3 165 129-395 98-265 (311)
209 KOG0295 WD40 repeat-containing 98.2 0.00077 1.7E-08 70.0 24.3 280 131-479 108-403 (406)
210 KOG0643 Translation initiation 98.2 0.00028 6.1E-09 70.3 20.2 246 129-482 50-315 (327)
211 KOG0296 Angio-associated migra 98.2 0.00087 1.9E-08 69.7 24.1 118 130-336 105-222 (399)
212 PF10282 Lactonase: Lactonase, 98.2 0.0017 3.7E-08 71.1 28.4 170 238-442 147-328 (345)
213 PF08662 eIF2A: Eukaryotic tra 98.1 0.00022 4.9E-09 71.0 19.5 172 237-445 8-185 (194)
214 KOG0310 Conserved WD40 repeat- 98.1 0.00049 1.1E-08 73.9 22.8 229 134-471 71-300 (487)
215 KOG2314 Translation initiation 98.1 0.00066 1.4E-08 74.0 23.7 198 238-472 350-559 (698)
216 COG2021 MET2 Homoserine acetyl 98.1 4E-05 8.6E-10 81.0 14.2 112 536-650 49-179 (368)
217 KOG2564 Predicted acetyltransf 98.1 1.3E-05 2.9E-10 80.5 9.8 117 509-639 51-167 (343)
218 COG4188 Predicted dienelactone 98.1 1.1E-05 2.5E-10 85.3 9.8 130 508-641 38-182 (365)
219 COG2706 3-carboxymuconate cycl 98.1 0.0033 7.1E-08 65.8 27.3 172 238-442 148-327 (346)
220 COG3208 GrsT Predicted thioest 98.1 8.1E-05 1.8E-09 74.4 14.9 205 536-784 6-234 (244)
221 PRK10115 protease 2; Provision 98.1 0.0033 7E-08 75.0 30.5 256 87-442 135-398 (686)
222 KOG0772 Uncharacterized conser 98.1 0.00015 3.3E-09 78.0 17.1 200 128-416 265-467 (641)
223 TIGR03230 lipo_lipase lipoprot 98.1 2.6E-05 5.7E-10 86.3 11.9 113 536-652 39-153 (442)
224 COG3571 Predicted hydrolase of 98.0 0.00045 9.7E-09 63.8 17.3 166 538-762 14-183 (213)
225 PF09752 DUF2048: Uncharacteri 98.0 0.00028 6.1E-09 74.6 18.4 124 521-649 76-206 (348)
226 KOG0645 WD40 repeat protein [G 98.0 0.003 6.4E-08 63.4 24.3 159 237-434 64-223 (312)
227 PF02239 Cytochrom_D1: Cytochr 98.0 0.00051 1.1E-08 75.5 21.4 81 366-448 276-357 (369)
228 KOG1274 WD40 repeat protein [G 98.0 0.0023 5E-08 73.8 26.6 235 131-439 13-263 (933)
229 TIGR01839 PHA_synth_II poly(R) 98.0 0.00027 5.9E-09 79.9 19.2 84 560-656 239-331 (560)
230 KOG2055 WD40 repeat protein [G 98.0 0.00016 3.5E-09 76.9 15.8 199 133-434 305-510 (514)
231 KOG0278 Serine/threonine kinas 98.0 0.0002 4.3E-09 70.6 15.2 198 132-437 101-298 (334)
232 KOG4497 Uncharacterized conser 98.0 0.00046 9.9E-09 70.6 18.1 93 365-466 325-418 (447)
233 PRK11028 6-phosphogluconolacto 98.0 0.0022 4.7E-08 69.7 25.1 167 238-441 129-309 (330)
234 PF06433 Me-amine-dh_H: Methyl 98.0 0.015 3.2E-07 61.6 29.8 117 364-487 189-323 (342)
235 KOG0305 Anaphase promoting com 98.0 0.00061 1.3E-08 75.6 20.3 199 237-486 220-421 (484)
236 PF02273 Acyl_transf_2: Acyl t 97.9 0.00022 4.7E-09 70.7 14.1 214 514-766 8-243 (294)
237 KOG0289 mRNA splicing factor [ 97.9 0.0026 5.5E-08 67.6 22.8 198 236-486 263-464 (506)
238 PF11339 DUF3141: Protein of u 97.9 0.001 2.2E-08 73.0 20.1 102 536-653 67-176 (581)
239 KOG0650 WD40 repeat nucleolar 97.9 0.00036 7.7E-09 76.6 16.5 222 129-440 398-639 (733)
240 KOG1553 Predicted alpha/beta h 97.9 5.3E-05 1.2E-09 77.9 9.4 137 509-659 215-351 (517)
241 COG1073 Hydrolases of the alph 97.9 0.00014 3.1E-09 77.0 13.3 239 513-783 25-298 (299)
242 KOG0265 U5 snRNP-specific prot 97.8 0.0017 3.7E-08 66.0 18.8 195 237-484 50-246 (338)
243 PF03959 FSH1: Serine hydrolas 97.8 4.6E-05 1E-09 77.2 8.1 168 537-764 3-205 (212)
244 PLN00181 protein SPA1-RELATED; 97.8 0.0098 2.1E-07 72.8 29.8 192 237-482 578-791 (793)
245 KOG1516 Carboxylesterase and r 97.8 3.2E-05 6.9E-10 90.3 7.4 131 515-653 93-232 (545)
246 COG3545 Predicted esterase of 97.8 0.00099 2.2E-08 63.1 15.6 122 592-761 36-157 (181)
247 KOG0316 Conserved WD40 repeat- 97.8 0.0045 9.8E-08 60.8 20.3 224 132-467 60-287 (307)
248 KOG0640 mRNA cleavage stimulat 97.8 0.0028 6E-08 64.5 19.2 260 134-463 115-409 (430)
249 KOG2139 WD40 repeat protein [G 97.8 0.003 6.5E-08 65.7 19.7 117 130-334 194-311 (445)
250 KOG0265 U5 snRNP-specific prot 97.8 0.0063 1.4E-07 61.9 21.4 247 126-486 42-298 (338)
251 KOG0275 Conserved WD40 repeat- 97.7 0.00061 1.3E-08 69.3 14.1 225 133-463 265-492 (508)
252 KOG0639 Transducin-like enhanc 97.7 0.00056 1.2E-08 73.5 14.4 223 133-434 467-702 (705)
253 KOG0282 mRNA splicing factor [ 97.7 0.00027 6E-09 75.7 12.2 225 130-463 257-487 (503)
254 KOG0283 WD40 repeat-containing 97.7 0.0027 5.8E-08 72.8 20.7 82 217-321 383-473 (712)
255 PRK13616 lipoprotein LpqB; Pro 97.7 0.0024 5.3E-08 74.2 20.8 165 237-442 352-530 (591)
256 KOG1274 WD40 repeat protein [G 97.7 0.0022 4.8E-08 74.0 19.3 168 107-335 78-263 (933)
257 KOG1273 WD40 repeat protein [G 97.7 0.0093 2E-07 61.1 21.3 247 135-496 27-291 (405)
258 KOG0278 Serine/threonine kinas 97.7 0.00099 2.1E-08 65.9 13.7 196 237-486 103-299 (334)
259 KOG0285 Pleiotropic regulator 97.6 0.015 3.3E-07 60.4 22.6 226 133-442 153-393 (460)
260 KOG0643 Translation initiation 97.6 0.0072 1.6E-07 60.6 19.5 212 133-437 95-318 (327)
261 PF11144 DUF2920: Protein of u 97.6 0.001 2.2E-08 71.9 14.4 165 600-783 164-368 (403)
262 KOG0284 Polyadenylation factor 97.6 0.0016 3.5E-08 68.6 15.4 248 132-463 97-363 (464)
263 PF10142 PhoPQ_related: PhoPQ- 97.6 0.0048 1E-07 66.9 19.6 230 523-783 51-321 (367)
264 PF07433 DUF1513: Protein of u 97.6 0.027 5.8E-07 59.1 24.0 214 237-487 7-250 (305)
265 KOG0973 Histone transcription 97.6 0.0018 3.8E-08 76.1 16.8 212 130-438 128-355 (942)
266 KOG0284 Polyadenylation factor 97.6 0.00074 1.6E-08 71.1 12.4 198 237-486 99-296 (464)
267 KOG0645 WD40 repeat protein [G 97.6 0.036 7.8E-07 55.9 23.1 186 237-466 17-211 (312)
268 PRK04940 hypothetical protein; 97.6 0.0016 3.4E-08 63.0 13.3 119 618-780 60-178 (180)
269 TIGR03502 lipase_Pla1_cef extr 97.5 0.00045 9.8E-09 81.4 11.0 100 536-638 447-575 (792)
270 PF05677 DUF818: Chlamydia CHL 97.5 0.00099 2.1E-08 69.8 12.2 121 507-639 111-236 (365)
271 PLN02919 haloacid dehalogenase 97.5 0.078 1.7E-06 66.3 30.9 167 304-487 687-891 (1057)
272 PF05577 Peptidase_S28: Serine 97.5 0.00031 6.7E-09 79.5 9.2 117 538-654 29-149 (434)
273 TIGR01849 PHB_depoly_PhaZ poly 97.5 0.0052 1.1E-07 67.6 18.1 83 560-656 122-211 (406)
274 KOG2048 WD40 repeat protein [G 97.5 0.11 2.3E-06 58.7 27.7 244 133-487 27-278 (691)
275 KOG0273 Beta-transducin family 97.4 0.02 4.3E-07 61.7 21.0 199 236-487 237-443 (524)
276 KOG0319 WD40-repeat-containing 97.4 0.025 5.3E-07 64.2 22.6 279 131-485 105-443 (775)
277 KOG0289 mRNA splicing factor [ 97.4 0.027 5.8E-07 60.1 21.2 192 133-427 305-497 (506)
278 PF07433 DUF1513: Protein of u 97.4 0.12 2.6E-06 54.3 25.9 234 130-438 49-285 (305)
279 KOG2919 Guanine nucleotide-bin 97.3 0.013 2.8E-07 60.3 16.9 180 238-463 162-353 (406)
280 KOG0646 WD40 repeat protein [G 97.3 0.025 5.5E-07 60.9 19.9 220 134-458 84-327 (476)
281 KOG0307 Vesicle coat complex C 97.3 0.0015 3.3E-08 77.0 11.4 212 236-487 66-287 (1049)
282 COG0596 MhpC Predicted hydrola 97.3 0.001 2.2E-08 67.9 9.1 103 538-653 21-123 (282)
283 COG3386 Gluconolactonase [Carb 97.3 0.061 1.3E-06 57.3 22.5 151 304-475 115-280 (307)
284 PF06057 VirJ: Bacterial virul 97.2 0.0023 4.9E-08 62.1 10.1 148 540-718 4-151 (192)
285 KOG2315 Predicted translation 97.2 0.033 7.1E-07 61.4 20.0 188 133-378 167-374 (566)
286 KOG0294 WD40 repeat-containing 97.2 0.045 9.6E-07 56.3 19.4 227 132-439 44-282 (362)
287 PLN02919 haloacid dehalogenase 97.2 0.16 3.6E-06 63.5 28.8 126 304-442 744-892 (1057)
288 KOG0277 Peroxisomal targeting 97.2 0.019 4.2E-07 57.2 16.1 199 238-484 64-265 (311)
289 COG5354 Uncharacterized protei 97.2 0.048 1E-06 59.5 20.3 196 237-473 176-382 (561)
290 PF10647 Gmad1: Lipoprotein Lp 97.2 0.052 1.1E-06 56.5 20.5 35 132-168 24-58 (253)
291 KOG2314 Translation initiation 97.1 0.028 6.2E-07 61.7 18.4 218 120-425 338-556 (698)
292 KOG0306 WD40-repeat-containing 97.1 0.015 3.4E-07 65.9 16.9 153 237-438 511-664 (888)
293 KOG0299 U3 snoRNP-associated p 97.1 0.072 1.6E-06 57.4 20.8 89 380-470 344-445 (479)
294 KOG1009 Chromatin assembly com 97.1 0.11 2.3E-06 55.3 21.6 61 99-166 32-95 (434)
295 KOG1273 WD40 repeat protein [G 97.1 0.059 1.3E-06 55.4 18.9 51 117-172 46-101 (405)
296 KOG0310 Conserved WD40 repeat- 97.0 0.045 9.8E-07 59.3 18.6 192 130-429 109-302 (487)
297 KOG0771 Prolactin regulatory e 97.0 0.024 5.1E-07 60.4 16.3 68 365-437 288-355 (398)
298 COG3150 Predicted esterase [Ge 97.0 0.0099 2.1E-07 55.7 11.7 139 599-779 42-186 (191)
299 KOG0639 Transducin-like enhanc 97.0 0.021 4.6E-07 61.8 15.7 179 238-465 469-648 (705)
300 KOG1408 WD40 repeat protein [F 97.0 0.11 2.3E-06 58.9 21.5 76 407-488 597-675 (1080)
301 KOG0641 WD40 repeat protein [G 97.0 0.42 9.1E-06 46.9 22.8 133 309-463 149-286 (350)
302 KOG0282 mRNA splicing factor [ 97.0 0.016 3.6E-07 62.5 14.3 246 129-487 212-465 (503)
303 KOG0316 Conserved WD40 repeat- 97.0 0.39 8.4E-06 47.7 22.4 239 132-486 18-259 (307)
304 PF06433 Me-amine-dh_H: Methyl 96.9 0.052 1.1E-06 57.6 17.9 129 302-447 186-329 (342)
305 KOG1063 RNA polymerase II elon 96.9 0.0065 1.4E-07 68.2 11.4 110 130-315 524-634 (764)
306 KOG3253 Predicted alpha/beta h 96.9 0.01 2.2E-07 66.0 12.8 170 537-764 175-349 (784)
307 COG1770 PtrB Protease II [Amin 96.9 0.26 5.5E-06 56.3 23.6 126 302-441 131-259 (682)
308 KOG0264 Nucleosome remodeling 96.9 0.046 9.9E-07 58.7 16.6 161 237-438 230-404 (422)
309 KOG2315 Predicted translation 96.8 0.15 3.1E-06 56.5 20.6 196 237-471 168-375 (566)
310 PRK02888 nitrous-oxide reducta 96.8 0.17 3.8E-06 58.0 21.4 211 238-495 238-483 (635)
311 COG4947 Uncharacterized protei 96.8 0.00072 1.6E-08 63.1 2.1 125 605-759 90-214 (227)
312 KOG1007 WD repeat protein TSSC 96.7 0.66 1.4E-05 47.4 22.8 147 238-428 127-281 (370)
313 KOG0641 WD40 repeat protein [G 96.7 0.66 1.4E-05 45.6 23.4 99 379-486 158-263 (350)
314 KOG0647 mRNA export protein (c 96.7 0.15 3.3E-06 52.3 18.4 240 133-484 29-281 (347)
315 KOG1539 WD repeat protein [Gen 96.7 0.078 1.7E-06 61.1 17.9 202 118-390 436-646 (910)
316 KOG2096 WD40 repeat protein [G 96.7 0.34 7.5E-06 50.0 20.4 235 135-426 136-393 (420)
317 KOG1445 Tumor-specific antigen 96.7 0.011 2.5E-07 65.4 10.6 102 271-391 696-797 (1012)
318 KOG0307 Vesicle coat complex C 96.6 0.016 3.4E-07 68.9 12.1 204 237-482 119-327 (1049)
319 KOG0319 WD40-repeat-containing 96.6 0.2 4.4E-06 57.1 20.1 139 299-463 463-602 (775)
320 PF00151 Lipase: Lipase; Inte 96.6 0.0056 1.2E-07 66.1 7.8 113 535-651 68-185 (331)
321 KOG4389 Acetylcholinesterase/B 96.6 0.003 6.5E-08 68.6 5.5 112 540-655 137-257 (601)
322 KOG0303 Actin-binding protein 96.6 0.35 7.7E-06 51.4 20.3 126 130-336 80-205 (472)
323 PF12146 Hydrolase_4: Putative 96.6 0.0089 1.9E-07 49.9 7.2 57 520-583 2-58 (79)
324 COG5354 Uncharacterized protei 96.5 0.2 4.2E-06 55.0 18.7 201 133-394 175-397 (561)
325 KOG0313 Microtubule binding pr 96.5 0.21 4.6E-06 52.7 18.4 169 300-486 194-378 (423)
326 KOG0264 Nucleosome remodeling 96.5 0.46 9.9E-06 51.3 21.3 203 238-484 181-404 (422)
327 PF05705 DUF829: Eukaryotic pr 96.5 0.053 1.2E-06 55.9 14.5 62 706-778 178-239 (240)
328 PTZ00472 serine carboxypeptida 96.5 0.0099 2.1E-07 67.4 9.7 130 520-656 61-219 (462)
329 KOG0302 Ribosome Assembly prot 96.5 0.12 2.7E-06 54.4 16.5 119 237-393 260-379 (440)
330 KOG2551 Phospholipase/carboxyh 96.5 0.024 5.2E-07 55.9 10.8 128 598-785 87-223 (230)
331 KOG0771 Prolactin regulatory e 96.5 0.045 9.7E-07 58.4 13.5 181 238-466 148-340 (398)
332 TIGR02171 Fb_sc_TIGR02171 Fibr 96.4 0.14 3E-06 60.8 18.3 56 106-168 330-387 (912)
333 PF08450 SGL: SMP-30/Gluconola 96.4 1.4 3E-05 45.5 27.0 195 238-487 3-215 (246)
334 KOG0288 WD40 repeat protein Ti 96.4 0.093 2E-06 55.9 14.7 131 274-429 321-454 (459)
335 KOG0640 mRNA cleavage stimulat 96.4 0.082 1.8E-06 54.2 13.9 210 118-428 196-418 (430)
336 KOG2183 Prolylcarboxypeptidase 96.3 0.017 3.7E-07 61.8 9.2 132 521-656 64-206 (492)
337 KOG0313 Microtubule binding pr 96.3 0.26 5.6E-06 52.1 17.4 151 237-435 263-415 (423)
338 KOG4378 Nuclear protein COP1 [ 96.3 2 4.3E-05 47.1 24.4 282 115-459 11-302 (673)
339 KOG2106 Uncharacterized conser 96.3 0.47 1E-05 51.9 19.8 69 237-331 450-518 (626)
340 KOG0295 WD40 repeat-containing 96.3 0.21 4.5E-06 52.5 16.6 224 215-487 121-367 (406)
341 KOG0308 Conserved WD40 repeat- 96.3 0.24 5.3E-06 55.7 18.1 263 215-518 38-319 (735)
342 COG3243 PhaC Poly(3-hydroxyalk 96.3 0.054 1.2E-06 58.6 12.7 89 560-656 131-220 (445)
343 PF06028 DUF915: Alpha/beta hy 96.3 0.062 1.3E-06 55.6 12.8 149 601-779 88-252 (255)
344 PF10230 DUF2305: Uncharacteri 96.2 0.026 5.6E-07 59.2 10.0 111 538-653 2-122 (266)
345 KOG2394 WD40 protein DMR-N9 [G 96.2 0.039 8.4E-07 60.5 11.2 34 133-171 292-325 (636)
346 KOG0274 Cdc4 and related F-box 96.2 0.77 1.7E-05 53.0 22.5 176 272-488 308-486 (537)
347 TIGR02171 Fb_sc_TIGR02171 Fibr 96.1 0.27 5.8E-06 58.4 18.5 86 237-339 352-445 (912)
348 KOG1524 WD40 repeat-containing 96.1 0.15 3.3E-06 55.9 15.0 185 217-468 78-274 (737)
349 KOG2139 WD40 repeat protein [G 96.1 0.54 1.2E-05 49.5 18.3 114 236-392 197-311 (445)
350 COG3386 Gluconolactonase [Carb 96.1 0.42 9E-06 51.0 18.2 15 238-252 166-180 (307)
351 PF07819 PGAP1: PGAP1-like pro 96.0 0.04 8.7E-07 56.2 10.2 47 602-648 66-118 (225)
352 KOG0288 WD40 repeat protein Ti 96.0 0.15 3.3E-06 54.3 14.3 94 366-466 349-447 (459)
353 KOG0281 Beta-TrCP (transducin 96.0 0.089 1.9E-06 54.7 12.2 142 310-486 329-479 (499)
354 KOG2110 Uncharacterized conser 96.0 0.55 1.2E-05 49.6 17.9 120 132-335 130-249 (391)
355 KOG0292 Vesicle coat complex C 96.0 1.4 3.1E-05 51.6 22.5 215 130-439 50-281 (1202)
356 KOG0302 Ribosome Assembly prot 96.0 0.046 9.9E-07 57.5 10.0 124 115-285 244-380 (440)
357 KOG4378 Nuclear protein COP1 [ 95.9 0.25 5.5E-06 53.8 15.4 117 133-336 166-282 (673)
358 PLN02733 phosphatidylcholine-s 95.9 0.014 3.1E-07 65.2 6.5 87 555-651 109-199 (440)
359 KOG1034 Transcriptional repres 95.8 0.77 1.7E-05 47.8 17.9 73 237-332 138-211 (385)
360 COG3490 Uncharacterized protei 95.8 2.7 6E-05 43.2 21.5 214 238-487 71-313 (366)
361 PF06977 SdiA-regulated: SdiA- 95.8 1 2.3E-05 46.4 19.2 201 237-481 24-247 (248)
362 KOG2110 Uncharacterized conser 95.8 0.6 1.3E-05 49.3 17.1 155 302-482 90-248 (391)
363 PF07676 PD40: WD40-like Beta 95.7 0.017 3.7E-07 40.8 4.3 29 134-162 11-39 (39)
364 PRK02888 nitrous-oxide reducta 95.7 0.38 8.3E-06 55.3 17.0 151 304-485 239-405 (635)
365 KOG2919 Guanine nucleotide-bin 95.7 0.5 1.1E-05 49.0 16.0 111 365-485 165-282 (406)
366 KOG1539 WD repeat protein [Gen 95.7 0.044 9.6E-07 63.0 9.2 69 236-332 578-646 (910)
367 KOG1538 Uncharacterized conser 95.6 0.5 1.1E-05 53.3 16.8 38 133-177 14-51 (1081)
368 KOG2237 Predicted serine prote 95.6 0.019 4.1E-07 64.7 5.9 77 93-171 98-176 (712)
369 COG3391 Uncharacterized conser 95.6 2.2 4.7E-05 47.4 22.4 169 237-442 118-287 (381)
370 PF10647 Gmad1: Lipoprotein Lp 95.6 1.5 3.2E-05 45.7 19.7 168 237-446 26-204 (253)
371 KOG4840 Predicted hydrolases o 95.5 0.068 1.5E-06 52.5 8.7 107 539-656 37-147 (299)
372 KOG4328 WD40 protein [Function 95.5 2.6 5.6E-05 45.9 21.0 249 132-482 235-493 (498)
373 PF03096 Ndr: Ndr family; Int 95.4 0.68 1.5E-05 48.2 16.3 126 514-653 5-134 (283)
374 KOG0299 U3 snoRNP-associated p 95.4 3.6 7.7E-05 44.9 21.8 37 130-171 141-177 (479)
375 COG3391 Uncharacterized conser 95.4 5.6 0.00012 44.1 27.0 204 238-487 77-286 (381)
376 PF07519 Tannase: Tannase and 95.3 0.079 1.7E-06 60.2 10.0 131 520-656 15-153 (474)
377 PF07082 DUF1350: Protein of u 95.3 0.79 1.7E-05 46.6 15.9 102 524-640 8-112 (250)
378 KOG2182 Hydrolytic enzymes of 95.3 0.11 2.3E-06 57.5 10.1 117 536-652 84-206 (514)
379 KOG0269 WD40 repeat-containing 95.3 0.49 1.1E-05 54.4 15.6 149 130-335 132-297 (839)
380 COG3490 Uncharacterized protei 95.3 3.3 7.1E-05 42.7 19.8 54 115-168 90-150 (366)
381 PF08386 Abhydrolase_4: TAP-li 95.3 0.036 7.7E-07 49.0 5.5 59 706-780 34-92 (103)
382 KOG2321 WD40 repeat protein [G 95.2 1.2 2.6E-05 49.7 18.0 194 238-487 55-261 (703)
383 PF06977 SdiA-regulated: SdiA- 95.2 4.6 9.9E-05 41.7 21.9 210 134-435 24-247 (248)
384 PF01674 Lipase_2: Lipase (cla 95.1 0.066 1.4E-06 54.1 7.7 89 541-638 4-95 (219)
385 KOG0268 Sof1-like rRNA process 95.1 0.22 4.7E-06 52.3 11.3 158 133-392 189-347 (433)
386 KOG1408 WD40 repeat protein [F 95.1 1.5 3.3E-05 50.1 18.4 110 302-438 599-713 (1080)
387 KOG0283 WD40 repeat-containing 95.0 0.74 1.6E-05 53.4 16.3 191 132-394 370-578 (712)
388 KOG0281 Beta-TrCP (transducin 95.0 0.29 6.4E-06 51.0 11.8 174 274-486 256-430 (499)
389 KOG0269 WD40 repeat-containing 94.9 1 2.3E-05 51.9 16.9 159 237-438 136-296 (839)
390 KOG4388 Hormone-sensitive lipa 94.9 0.063 1.4E-06 59.6 7.0 90 536-637 394-488 (880)
391 KOG1036 Mitotic spindle checkp 94.8 5.9 0.00013 41.2 24.4 32 133-169 15-46 (323)
392 KOG1445 Tumor-specific antigen 94.7 1.3 2.8E-05 49.9 16.6 165 302-485 630-799 (1012)
393 KOG3967 Uncharacterized conser 94.7 0.24 5.3E-06 48.3 9.8 110 524-641 88-213 (297)
394 PF00450 Peptidase_S10: Serine 94.7 0.16 3.6E-06 56.9 10.4 141 511-656 16-184 (415)
395 KOG2931 Differentiation-relate 94.6 1.1 2.5E-05 46.3 14.8 130 508-651 22-155 (326)
396 KOG0268 Sof1-like rRNA process 94.6 1.5 3.2E-05 46.4 15.7 139 302-466 190-331 (433)
397 KOG0285 Pleiotropic regulator 94.5 4.7 0.0001 42.7 19.1 179 274-487 172-351 (460)
398 KOG0274 Cdc4 and related F-box 94.5 9 0.0002 44.3 23.8 174 275-488 271-445 (537)
399 PF15492 Nbas_N: Neuroblastoma 94.4 5.6 0.00012 41.0 19.2 57 107-169 20-76 (282)
400 PF05990 DUF900: Alpha/beta hy 94.4 0.17 3.6E-06 51.9 8.7 112 536-654 16-138 (233)
401 KOG0649 WD40 repeat protein [G 94.4 1.4 3E-05 44.2 14.3 78 409-494 117-195 (325)
402 KOG0294 WD40 repeat-containing 94.4 1.8 4E-05 44.9 15.6 148 293-469 37-187 (362)
403 KOG1523 Actin-related protein 94.3 2.7 5.9E-05 43.8 16.7 204 238-486 14-238 (361)
404 PF00975 Thioesterase: Thioest 94.3 0.18 3.9E-06 51.3 8.8 84 539-638 1-86 (229)
405 KOG0646 WD40 repeat protein [G 94.3 1.5 3.2E-05 47.8 15.4 174 276-484 62-247 (476)
406 KOG0277 Peroxisomal targeting 94.1 7.7 0.00017 39.3 21.5 224 133-460 62-288 (311)
407 KOG0303 Actin-binding protein 94.0 1.4 3E-05 47.0 14.3 150 131-376 131-281 (472)
408 PF11187 DUF2974: Protein of u 93.9 0.14 3E-06 52.0 6.7 74 575-649 42-119 (224)
409 KOG0276 Vesicle coat complex C 93.9 6.8 0.00015 44.5 19.8 137 276-438 120-257 (794)
410 KOG0292 Vesicle coat complex C 93.7 8.2 0.00018 45.7 20.7 218 217-487 24-283 (1202)
411 KOG2100 Dipeptidyl aminopeptid 93.6 22 0.00047 43.2 28.1 69 418-486 353-424 (755)
412 COG1506 DAP2 Dipeptidyl aminop 93.6 19 0.00041 42.7 25.1 122 300-437 216-343 (620)
413 KOG0276 Vesicle coat complex C 93.6 16 0.00036 41.6 22.5 158 275-463 77-240 (794)
414 KOG0290 Conserved WD40 repeat- 93.5 10 0.00023 39.1 20.6 166 279-469 177-355 (364)
415 PF07676 PD40: WD40-like Beta 93.5 0.18 4E-06 35.4 4.9 29 302-330 11-39 (39)
416 PF04762 IKI3: IKI3 family; I 93.5 26 0.00057 43.5 29.3 115 303-438 213-333 (928)
417 KOG4283 Transcription-coupled 93.4 11 0.00024 39.0 23.4 205 237-494 104-332 (397)
418 KOG0650 WD40 repeat nucleolar 93.3 3.9 8.5E-05 46.1 16.8 149 237-430 524-674 (733)
419 KOG0647 mRNA export protein (c 92.9 6.1 0.00013 41.0 16.3 107 364-486 78-186 (347)
420 KOG1538 Uncharacterized conser 92.9 2.1 4.6E-05 48.6 14.0 156 301-482 14-211 (1081)
421 KOG1332 Vesicle coat complex C 92.8 11 0.00024 38.0 17.5 64 407-470 208-276 (299)
422 KOG4499 Ca2+-binding protein R 92.5 7.7 0.00017 38.9 15.8 100 365-469 164-273 (310)
423 KOG4499 Ca2+-binding protein R 92.3 3.5 7.5E-05 41.3 13.2 16 238-253 161-176 (310)
424 KOG0267 Microtubule severing p 92.1 0.66 1.4E-05 53.1 9.2 42 130-177 69-110 (825)
425 KOG0270 WD40 repeat-containing 92.1 12 0.00027 40.7 18.2 74 236-335 288-361 (463)
426 PF05057 DUF676: Putative seri 92.1 0.18 3.9E-06 51.1 4.6 21 618-638 78-98 (217)
427 KOG1524 WD40 repeat-containing 92.1 3.4 7.4E-05 45.9 14.2 97 364-470 151-247 (737)
428 KOG1007 WD repeat protein TSSC 91.9 15 0.00032 38.0 17.5 119 133-335 125-246 (370)
429 KOG4227 WD40 repeat protein [G 91.8 6.7 0.00014 41.8 15.4 125 130-336 55-181 (609)
430 COG3204 Uncharacterized protei 91.6 18 0.0004 37.7 18.0 109 364-482 186-310 (316)
431 PLN03016 sinapoylglucose-malat 91.6 0.38 8.3E-06 54.0 6.8 140 511-656 42-213 (433)
432 KOG1063 RNA polymerase II elon 91.2 11 0.00023 43.5 17.3 69 234-320 525-593 (764)
433 PF04762 IKI3: IKI3 family; I 91.2 48 0.001 41.3 29.6 31 136-166 214-245 (928)
434 PF13360 PQQ_2: PQQ-like domai 91.0 17 0.00038 36.6 18.1 112 308-446 33-148 (238)
435 KOG2394 WD40 protein DMR-N9 [G 90.7 4.5 9.7E-05 45.1 13.4 103 463-577 431-540 (636)
436 PF12048 DUF3530: Protein of u 90.7 15 0.00033 39.3 17.7 135 509-651 63-227 (310)
437 PLN02209 serine carboxypeptida 90.5 0.74 1.6E-05 51.8 7.8 140 511-656 44-215 (437)
438 KOG4328 WD40 protein [Function 90.3 32 0.0007 37.8 19.5 204 236-486 236-452 (498)
439 KOG1920 IkappaB kinase complex 90.0 31 0.00066 42.6 20.5 120 304-438 200-322 (1265)
440 KOG0308 Conserved WD40 repeat- 90.0 10 0.00022 43.3 15.6 112 276-415 194-306 (735)
441 KOG1523 Actin-related protein 89.8 10 0.00022 39.8 14.3 126 302-438 149-280 (361)
442 KOG1282 Serine carboxypeptidas 89.5 2.2 4.8E-05 47.8 10.3 144 511-657 49-217 (454)
443 KOG4283 Transcription-coupled 89.5 29 0.00063 36.1 24.0 110 273-395 166-279 (397)
444 PRK13613 lipoprotein LpqB; Pro 89.2 35 0.00075 40.1 20.3 86 301-395 456-542 (599)
445 KOG0321 WD40 repeat-containing 89.1 48 0.001 38.1 23.0 112 304-440 276-393 (720)
446 KOG2111 Uncharacterized conser 88.9 33 0.00072 36.0 20.0 96 383-485 158-257 (346)
447 PF13360 PQQ_2: PQQ-like domai 88.6 16 0.00034 37.0 15.5 105 368-487 34-143 (238)
448 PF02089 Palm_thioest: Palmito 88.6 1.8 3.9E-05 45.1 8.2 31 618-648 80-111 (279)
449 PRK10252 entF enterobactin syn 88.4 1.7 3.6E-05 56.6 9.9 99 538-651 1068-1169(1296)
450 KOG0322 G-protein beta subunit 88.4 32 0.0007 35.2 16.6 56 409-466 254-309 (323)
451 PF07519 Tannase: Tannase and 88.4 0.7 1.5E-05 52.6 5.6 73 707-781 354-426 (474)
452 PF04053 Coatomer_WDAD: Coatom 88.2 20 0.00043 40.5 16.8 95 311-434 117-219 (443)
453 PF01764 Lipase_3: Lipase (cla 88.2 1 2.2E-05 41.8 5.7 38 599-638 47-84 (140)
454 KOG2565 Predicted hydrolases o 87.9 2.2 4.8E-05 45.5 8.3 120 517-649 132-260 (469)
455 KOG2041 WD40 repeat protein [G 87.8 19 0.0004 41.7 15.8 132 217-395 232-372 (1189)
456 KOG0300 WD40 repeat-containing 87.8 23 0.00049 37.0 15.1 153 303-486 276-430 (481)
457 KOG0267 Microtubule severing p 87.8 2.1 4.5E-05 49.2 8.6 209 207-465 33-253 (825)
458 KOG1963 WD40 repeat protein [G 87.7 4.4 9.6E-05 47.6 11.4 70 237-335 254-323 (792)
459 COG3319 Thioesterase domains o 87.2 1.9 4E-05 44.8 7.3 85 539-638 1-85 (257)
460 KOG2321 WD40 repeat protein [G 87.1 32 0.0007 38.9 16.9 153 303-487 55-208 (703)
461 PF11288 DUF3089: Protein of u 86.9 1.6 3.4E-05 43.5 6.4 87 567-654 44-138 (207)
462 COG4814 Uncharacterized protei 86.9 14 0.00031 37.7 12.9 148 602-779 122-284 (288)
463 KOG1034 Transcriptional repres 86.8 9.6 0.00021 40.0 12.0 78 294-391 302-382 (385)
464 KOG2041 WD40 repeat protein [G 86.5 21 0.00045 41.4 15.3 64 407-471 259-329 (1189)
465 KOG3975 Uncharacterized conser 86.4 9.4 0.0002 38.8 11.4 116 520-638 11-130 (301)
466 cd00741 Lipase Lipase. Lipase 86.0 1.1 2.4E-05 42.4 4.8 26 616-641 26-51 (153)
467 KOG2106 Uncharacterized conser 85.8 65 0.0014 36.1 29.2 136 302-466 371-507 (626)
468 KOG0270 WD40 repeat-containing 85.7 61 0.0013 35.6 26.8 184 273-486 264-451 (463)
469 KOG0649 WD40 repeat protein [G 85.6 23 0.0005 35.8 13.4 74 366-447 122-195 (325)
470 PF04083 Abhydro_lipase: Parti 85.4 2.7 5.8E-05 33.3 5.7 50 504-554 8-59 (63)
471 KOG0290 Conserved WD40 repeat- 85.3 51 0.0011 34.3 18.1 211 237-486 99-320 (364)
472 PF05096 Glu_cyclase_2: Glutam 85.0 51 0.0011 34.2 23.0 195 238-483 48-260 (264)
473 COG4782 Uncharacterized protei 84.9 3.2 7E-05 44.5 7.8 111 537-655 115-236 (377)
474 KOG3881 Uncharacterized conser 84.5 64 0.0014 34.9 17.3 191 217-441 118-323 (412)
475 COG1075 LipA Predicted acetylt 83.7 3.1 6.6E-05 45.3 7.4 97 540-651 61-162 (336)
476 PRK13614 lipoprotein LpqB; Pro 83.5 90 0.0019 36.5 19.4 85 302-395 436-521 (573)
477 PF03088 Str_synth: Strictosid 83.4 11 0.00024 32.1 9.0 35 136-170 2-49 (89)
478 PF02450 LCAT: Lecithin:choles 83.2 1.6 3.5E-05 48.4 5.2 52 597-651 101-158 (389)
479 KOG3914 WD repeat protein WDR4 82.7 30 0.00066 37.4 13.8 76 365-448 158-233 (390)
480 KOG1963 WD40 repeat protein [G 82.6 1.2E+02 0.0025 36.4 21.4 155 303-486 209-377 (792)
481 PF03283 PAE: Pectinacetyleste 82.6 1 2.2E-05 49.2 3.2 37 600-636 138-174 (361)
482 KOG1920 IkappaB kinase complex 81.5 1.1E+02 0.0023 38.3 19.1 31 136-166 200-230 (1265)
483 KOG4532 WD40-like repeat conta 81.4 69 0.0015 33.0 16.8 150 215-404 129-294 (344)
484 COG3204 Uncharacterized protei 80.9 78 0.0017 33.3 21.8 48 116-168 71-118 (316)
485 PHA03098 kelch-like protein; P 80.8 32 0.0007 39.9 15.1 116 370-494 389-519 (534)
486 TIGR03075 PQQ_enz_alc_DH PQQ-d 80.7 1.2E+02 0.0026 35.3 29.9 61 383-449 440-501 (527)
487 TIGR03300 assembly_YfgL outer 79.7 48 0.001 36.4 15.4 144 310-487 64-211 (377)
488 PLN02454 triacylglycerol lipas 79.5 2.9 6.2E-05 46.1 5.3 41 597-638 207-248 (414)
489 TIGR03300 assembly_YfgL outer 79.4 1E+02 0.0022 33.8 29.2 128 370-518 241-371 (377)
490 KOG1036 Mitotic spindle checkp 79.2 88 0.0019 32.9 16.4 150 301-486 15-165 (323)
491 KOG3724 Negative regulator of 79.0 2.4 5.2E-05 49.5 4.5 47 600-647 157-210 (973)
492 KOG2541 Palmitoyl protein thio 78.9 20 0.00042 37.0 10.4 89 541-641 26-115 (296)
493 cd00519 Lipase_3 Lipase (class 78.3 3.9 8.5E-05 41.6 5.7 38 599-638 111-148 (229)
494 KOG1230 Protein containing rep 77.5 76 0.0016 34.8 14.7 163 106-336 99-277 (521)
495 PLN02571 triacylglycerol lipas 77.5 3.6 7.8E-05 45.4 5.3 41 597-638 205-246 (413)
496 PF06259 Abhydrolase_8: Alpha/ 76.9 6.6 0.00014 38.2 6.4 38 599-640 94-131 (177)
497 PLN02408 phospholipase A1 76.6 3.9 8.4E-05 44.5 5.1 40 599-638 181-220 (365)
498 PF05096 Glu_cyclase_2: Glutam 76.4 83 0.0018 32.7 14.4 106 370-487 55-160 (264)
499 KOG0321 WD40 repeat-containing 75.1 68 0.0015 36.9 14.2 44 276-319 294-337 (720)
500 KOG1240 Protein kinase contain 75.0 2.3E+02 0.0051 35.6 21.6 108 372-488 1165-1277(1431)
No 1
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-109 Score=897.52 Aligned_cols=661 Identities=28% Similarity=0.508 Sum_probs=596.8
Q ss_pred CCCccccCCceeeeecCccccCCCCcccCCC--CHHHHHHHHHHHHHHHHHHcCC-ccHHHHHHHHHhhhcCCCCCCceE
Q 003878 12 QYPVARRDESVVDDYHGVKIVDPYRWLEDPD--AEEVKDFVQKQVELTDSVLKNC-DVRDKLREKITKLFDSPRYDAPFK 88 (789)
Q Consensus 12 ~~p~~~~~~~~~~~~~g~~~~D~y~wled~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 88 (789)
+||+|+|.|+ +.+.||.+++|+|+||+|.+ +|+|++||++||+|+++.++++ +++++|.+||+.+++.++.|+|.+
T Consensus 5 ~pP~a~k~~~-~~~~hg~~~~D~Y~WlRd~~~~~p~vl~yL~aEN~Yt~~~~a~~~~L~~~if~Ei~~Rik~dd~Svp~~ 83 (682)
T COG1770 5 LPPIAKKVPT-TRTHHGDTRVDDYAWLRDDNWSNPEVLAYLEAENAYTEAVMAHLQPLQKKIFEEIKGRIKEDDLSVPYR 83 (682)
T ss_pred CCCCccccce-eeeecCceeecchHhhhCCcccChHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHhhhccCcCCCCccc
Confidence 7999999995 79999999999999999999 9999999999999999999999 899999999999999999999999
Q ss_pred eCCEEEEEEEcCCCCeeEEEEecCCC-C-CceEEeccCCCCCC-CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEc
Q 003878 89 RGNKYFYFHNTGLQPQSVLYVQDSLD-A-KAKVLLDPNTLSDD-GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRI 165 (789)
Q Consensus 89 ~g~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~l~d~~~~~~~-~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl 165 (789)
+|+++||.+...+.+++ +|+|...+ + .+++|||+|.++++ ..++++.+++|||+++|||+++..|+++++|++.||
T Consensus 84 ~~~~~Yy~r~~~g~~y~-~~~R~~~~g~~~eevlLD~n~~A~g~~f~~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL 162 (682)
T COG1770 84 KGPYEYYSRTEEGKEYP-IYCRQPDEGGEGEEVLLDVNKEAEGHDFFSLGAASISPDHNLLAYSVDVLGDEQYTLRFKDL 162 (682)
T ss_pred cCCeeEEEEecCCCcce-eEEeccCCCCCceeEeecchhccCcccceeeeeeeeCCCCceEEEEEecccccEEEEEEEec
Confidence 99999999998888775 67773333 3 38999999999998 678999999999999999999999999999999999
Q ss_pred CCCceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeC
Q 003878 166 EDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHD 245 (789)
Q Consensus 166 ~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspD 245 (789)
+||+.+++.+.++ ..+++|.+|
T Consensus 163 ~tg~~~~d~i~~~----------------------------------------------------------~~~~~Wa~d 184 (682)
T COG1770 163 ATGEELPDEITNT----------------------------------------------------------SGSFAWAAD 184 (682)
T ss_pred ccccccchhhccc----------------------------------------------------------ccceEEecC
Confidence 9999998888876 489999999
Q ss_pred CcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCc
Q 003878 246 SKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPV 325 (789)
Q Consensus 246 g~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~ 325 (789)
+++|||++.++ ..++.++++|.+|++...+.+||++++ +.++.++..|.+.++|++...+.. +
T Consensus 185 ~~~lfYt~~d~--------------~~rp~kv~~h~~gt~~~~d~lvyeE~d-~~f~~~v~~s~s~~yi~i~~~~~~--t 247 (682)
T COG1770 185 GKTLFYTRLDE--------------NHRPDKVWRHRLGTPGSSDELVYEEKD-DRFFLSVGRSRSEAYIVISLGSHI--T 247 (682)
T ss_pred CCeEEEEEEcC--------------CCCcceEEEEecCCCCCcceEEEEcCC-CcEEEEeeeccCCceEEEEcCCCc--c
Confidence 99999999875 569999999999999999999999987 566679999999999999986554 7
Q ss_pred eEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEEC-CCCCCeEEeccCC
Q 003878 326 NKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDL-KEPNDWFEVIPEA 404 (789)
Q Consensus 326 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl-~~~~~~~~l~~~~ 404 (789)
+++++++.+... ..+..-+....+.+|. ..+.|++||+.+|.++.+++|+..++ .+.+.|++++++.
T Consensus 248 sE~~ll~a~~p~-----------~~p~vv~pr~~g~eY~-~eh~~d~f~i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~ 315 (682)
T COG1770 248 SEVRLLDADDPE-----------AEPKVVLPRENGVEYS-VEHGGDRFYILSNADGKNFKLVRAPVSADKSNWRELIPHR 315 (682)
T ss_pred eeEEEEecCCCC-----------CceEEEEEcCCCcEEe-eeecCcEEEEEecCCCcceEEEEccCCCChhcCeeeeccC
Confidence 899999988732 2222222223333444 46779999999999889999999998 2334699999999
Q ss_pred CCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC--CeeEE-EeecccCCcEEEEEEcCCCCCcEEEEE
Q 003878 405 ERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE--IGSVN-AISARREDSVVFISFTSFLIPGIVYQC 481 (789)
Q Consensus 405 ~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~--~~~v~-~~s~s~d~~~l~~~~ss~~~P~~ly~~ 481 (789)
++..++++..+. ++|++..+.++.++|++++.++|+. ..|.++ ..... ..+..++++.++++++|+++|.++|.|
T Consensus 316 ~~~~l~~~~~f~-~~lVl~eR~~glp~v~v~~~~~~~~-~~i~f~~~ay~~~l~~~~e~~s~~lR~~ysS~ttP~~~~~~ 393 (682)
T COG1770 316 EDVRLEGVDLFA-DHLVLLERQEGLPRVVVRDRKTGEE-RGIAFDDEAYSAGLSGNPEFDSDRLRYSYSSMTTPATLFDY 393 (682)
T ss_pred CCceeeeeeeec-cEEEEEecccCCceEEEEecCCCce-eeEEecchhhhccccCCCCCCCccEEEEeecccccceeEEe
Confidence 999999999998 8999999999999999999988876 567776 22221 234557889999999999999999999
Q ss_pred ECCCCCceEEEeeeccCCC-CCCCCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHH
Q 003878 482 NLKTETPEMKIFRETIIPG-FDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSR 560 (789)
Q Consensus 482 dl~tg~~~~~~l~~~~~~~-~~~~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~ 560 (789)
|+.+++ .++|+++.+++ |+++.|+.+++++++.|| ++||++|+++++.+.++++||+||+||+||.+..+.|+..+
T Consensus 394 dm~t~e--r~~LkqqeV~~g~dp~~Y~s~riwa~a~dg-v~VPVSLvyrkd~~~~g~~p~lLygYGaYG~s~~p~Fs~~~ 470 (682)
T COG1770 394 DMATGE--RTLLKQQEVPGGFDPEDYVSRRIWATADDG-VQVPVSLVYRKDTKLDGSAPLLLYGYGAYGISMDPSFSIAR 470 (682)
T ss_pred eccCCc--EEEEEeccCCCCCChhHeEEEEEEEEcCCC-cEeeEEEEEecccCCCCCCcEEEEEeccccccCCcCcccce
Confidence 999994 89999998886 999999999999999999 99999999999988899999999999999999999999999
Q ss_pred HHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC
Q 003878 561 TILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRP 640 (789)
Q Consensus 561 ~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p 640 (789)
++|++ ||++++++|+||||+.|++|+++|+...|+|+|+||++|+++|+++|++++++|+++|+||||+||+++++++|
T Consensus 471 lSLlD-RGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~P 549 (682)
T COG1770 471 LSLLD-RGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAP 549 (682)
T ss_pred eeeec-CceEEEEEEeecccccChHHHHhhhhhhccccHHHHHHHHHHHHHcCcCCccceEEeccCchhHHHHHHHhhCh
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEecCCccccccccc-----ccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecC
Q 003878 641 DLFGCALAHVGVMDMLRYHK-----FTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTAD 715 (789)
Q Consensus 641 d~f~a~v~~~p~~d~~~~~~-----~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~ 715 (789)
++|+++|++|||+|++++|. ++.. .| .|||||.+++.|++|++||||.||+.. .|||+|+++|.
T Consensus 550 ~lf~~iiA~VPFVDvltTMlD~slPLT~~-E~-~EWGNP~d~e~y~yikSYSPYdNV~a~---------~YP~ilv~~Gl 618 (682)
T COG1770 550 DLFAGIIAQVPFVDVLTTMLDPSLPLTVT-EW-DEWGNPLDPEYYDYIKSYSPYDNVEAQ---------PYPAILVTTGL 618 (682)
T ss_pred hhhhheeecCCccchhhhhcCCCCCCCcc-ch-hhhCCcCCHHHHHHHhhcCchhccccC---------CCCceEEEccc
Confidence 99999999999999998874 3333 34 899999999999999999999999986 79999999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCC
Q 003878 716 HDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 785 (789)
Q Consensus 716 ~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 785 (789)
+|+||.+||+.||+++|+.. ++++.|++|++.+++||++..++.+.+++.+..++|+.+.++.
T Consensus 619 ~D~rV~YwEpAKWvAkLR~~-------~td~~plLlkt~M~aGHgG~SgRf~~lee~A~eYaF~l~~~~~ 681 (682)
T COG1770 619 NDPRVQYWEPAKWVAKLREL-------KTDGNPLLLKTNMDAGHGGASGRFQRLEEIAFEYAFLLKLAGT 681 (682)
T ss_pred cCCccccchHHHHHHHHhhc-------ccCCCcEEEEecccccCCCCCCchHHHHHHHHHHHHHhhhccC
Confidence 99999999999999999998 7778899999999999999999999999999999999988764
No 2
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-108 Score=877.86 Aligned_cols=706 Identities=51% Similarity=0.841 Sum_probs=617.3
Q ss_pred CCCCCCccccCCceeeeecCccccCCCCcccCCCCHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHhhhcCCCCCCceE
Q 003878 9 ESLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDKLREKITKLFDSPRYDAPFK 88 (789)
Q Consensus 9 ~~~~~p~~~~~~~~~~~~~g~~~~D~y~wled~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (789)
++++||+++|++++++++||+++.|||+||||+++.++++||++||.||+++|+++...++|..||+++++++.+++|.+
T Consensus 2 ~~~~~P~~~k~e~~~~~~hg~~v~Dpy~Wl~d~d~~~~~~fv~~en~~t~~vl~~~e~~~kl~~em~~~i~ye~~~~p~r 81 (712)
T KOG2237|consen 2 EPLQYPVARKDESVAEDFHGVTVEDPYRWLEDPDDTEMKEFVEAENKYTDAVLEDTETKEKLFSEMTKRIDYEIITPPLR 81 (712)
T ss_pred CCCCCCCcccccchhhhcCCceecCcchhhcCCcHHHHHHHHHHhhhhhHHHHhccHHHHHHHHHhhhccCccccCCccc
Confidence 56789999999999999999999999999999999999999999999999999999877799999999999999999999
Q ss_pred eCCEEEEEEEcCCCCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCC
Q 003878 89 RGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQ 168 (789)
Q Consensus 89 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg 168 (789)
+|++|||+++++++ |+++|||++++.++++++|+|+++++++..+..-++|.|++|++|.++..|.++..|..+..+.|
T Consensus 82 ~G~~yyY~~n~~lk-q~vl~~rr~~~~e~~~~ld~~~~~dd~tV~Ld~~~~aed~~Y~~~gls~~spD~~~ia~~~~~~~ 160 (712)
T KOG2237|consen 82 WGPWYYYFYNTGLK-QYVLYCRRLLEKEEEVFLDPNALGDDGTVLLDTNQIAEDFKYFAYGLSESSPDHKYIAYTKDTEG 160 (712)
T ss_pred cCCEEEEEEcCCce-ehhHHHHhhhhcccceecCCccCCCCceEEechhhhhhcCCceEEeecccCCCceEEEEEEcCCC
Confidence 99999999999998 89999999888888999999999999999899999999999999999999999999999998888
Q ss_pred ceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcE
Q 003878 169 IVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKG 248 (789)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~ 248 (789)
..+.+.+.++ ++..++|.+|++.
T Consensus 161 ~e~~~~v~~~---------------------------------------------------------~~~~~~~~~~~~g 183 (712)
T KOG2237|consen 161 KELFTVVIDV---------------------------------------------------------KFSGPVWTHDGKG 183 (712)
T ss_pred Cccceeeeee---------------------------------------------------------ccCCceeeccCCc
Confidence 8777666666 5678899999999
Q ss_pred EEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEE
Q 003878 249 FFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKV 328 (789)
Q Consensus 249 i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i 328 (789)
++|.+... ..+.++..++.+..+++++||+|.+|+.+++|++++++++++.++.....+.+|.+++.+.+..++..+.+
T Consensus 184 ~~y~~w~~-~dg~~l~~~t~~~~~r~hkvy~h~~Gtdq~~Dvl~~~e~d~~~~vf~~~~kD~~~~~i~si~~t~s~~~~v 262 (712)
T KOG2237|consen 184 VSYLAWAK-QDGEDLLYGTEDENNRPHKVYYHTLGTDQSEDVLLYEEKDEPKHVFISETKDSGFYTINSISETCSPVNKV 262 (712)
T ss_pred eEeeeecc-cCCceeeeeeeccccCcceEEEEecccCCCcceEEEecCCCCeEEEEEEEecCceEEEEEeeccCCccceE
Confidence 98888765 22334445666678899999999999999999999999998888877777777777776666666667899
Q ss_pred EEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCC--CCeEEeccCCCC
Q 003878 329 YYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEP--NDWFEVIPEAER 406 (789)
Q Consensus 329 ~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~--~~~~~l~~~~~~ 406 (789)
|.+|+.....++..+ ..++.+.+.-+...+.++..++..+++++|.+++++.+.++++..+ ..|+.++++.+.
T Consensus 263 f~~d~~~~~~gl~~~-----~~~~v~~v~~f~eh~~fi~~~~t~~~~~tn~~~p~y~l~r~~~~~~~~~~W~~v~~e~~~ 337 (712)
T KOG2237|consen 263 FLCDLSSPSDGLELL-----ILPRVKGVDCFVEHYDFITNEGTEFYFLTNKDAPNYYLLRIDVKEPEESKWETVFAEHEK 337 (712)
T ss_pred EEEecccccCCcchh-----eeeccchhhhhhhhhhheeccCcceeeeccCCCCceeEEeeeccCccccccceeecccch
Confidence 999987743332110 1123333333444445677788999999999999999999999877 369999998888
Q ss_pred ceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 407 DVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 407 ~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
..+..+...+++.+++.+..+....+.+.++.+|...+.+++|.+++..+....+++.++|.++|+.+|+.||.||+..+
T Consensus 338 ~vl~~~~~~~~~~ll~~~~~~l~~i~q~~~~l~g~~~~~fpLpv~sv~~~~g~~~~~~~~f~~sS~l~P~~iy~yDl~~~ 417 (712)
T KOG2237|consen 338 DVLEDVDMVNDNLLLVCYMSDLKHILQVRDLLDGSLLRSFPLPVGSVSGTSGDFKSSTIRFQFSSFLTPGSIYDYDLANG 417 (712)
T ss_pred hhhhhhhhhcCceEEEEEecCchhhccccccccCceeeeecCCCCcccccccCCCCceEEEEEeccCCCCeEEEeeccCC
Confidence 88888888886778888877766556666666677778899998888777778888999999999999999999999998
Q ss_pred CceEEEeeeccC--CCCCCCCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHH
Q 003878 487 TPEMKIFRETII--PGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILM 564 (789)
Q Consensus 487 ~~~~~~l~~~~~--~~~~~~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l 564 (789)
+.+..++.+... ++|+.+.|++++++++|+|| ++|||+|++.++.+.+++.|++||+||||+.+..|.|+.++..++
T Consensus 418 ~~e~~vf~e~~~~lpg~~~s~y~~~r~~~~SkDG-t~VPM~Iv~kk~~k~dg~~P~LLygYGay~isl~p~f~~srl~ll 496 (712)
T KOG2237|consen 418 KPEPSVFREITVVLPGFDASDYVVERIEVSSKDG-TKVPMFIVYKKDIKLDGSKPLLLYGYGAYGISLDPSFRASRLSLL 496 (712)
T ss_pred CCCCcceeeeccccCcccccceEEEEEEEecCCC-CccceEEEEechhhhcCCCceEEEEecccceeeccccccceeEEE
Confidence 655566665444 78999999999999999999 999999999998888899999999999999999999999999999
Q ss_pred HcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcee
Q 003878 565 RHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFG 644 (789)
Q Consensus 565 ~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~ 644 (789)
+ +|++.+.+|+|||||+|.+||+.|+...|+|+|+||++|++||+++||+.|+|+++.|+|+||+|++++++++||||+
T Consensus 497 d-~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfia~AeyLve~gyt~~~kL~i~G~SaGGlLvga~iN~rPdLF~ 575 (712)
T KOG2237|consen 497 D-RGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFIACAEYLVENGYTQPSKLAIEGGSAGGLLVGACINQRPDLFG 575 (712)
T ss_pred e-cceEEEEEeeccCcccccchhhccchhhhcccHHHHHHHHHHHHHcCCCCccceeEecccCccchhHHHhccCchHhh
Confidence 9 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHH
Q 003878 645 CALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH 724 (789)
Q Consensus 645 a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~ 724 (789)
|+|++|||+||++++.+++++.|.++||+..+|+.++++.+++||+++++++.+ ..||.|||+++.+|+||++++
T Consensus 576 avia~VpfmDvL~t~~~tilplt~sd~ee~g~p~~~~~~~~i~~y~pv~~i~~q-----~~YPS~lvtta~hD~RV~~~~ 650 (712)
T KOG2237|consen 576 AVIAKVPFMDVLNTHKDTILPLTTSDYEEWGNPEDFEDLIKISPYSPVDNIKKQ-----VQYPSMLVTTADHDDRVGPLE 650 (712)
T ss_pred hhhhcCcceehhhhhccCccccchhhhcccCChhhhhhhheecccCccCCCchh-----ccCcceEEeeccCCCcccccc
Confidence 999999999999999999999998888777666666677777666666655332 359999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCCCCC
Q 003878 725 SLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGASWV 788 (789)
Q Consensus 725 ~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~~ 788 (789)
+.||+++||...+.++ .+.+|+.+++.+++||+...++.+++++.+..++||.+.++..|.
T Consensus 651 ~~K~vAklre~~~~~~---~q~~pvll~i~~~agH~~~~~~~k~~~E~a~~yaFl~K~~~~~~~ 711 (712)
T KOG2237|consen 651 SLKWVAKLREATCDSL---KQTNPVLLRIETKAGHGAEKPRFKQIEEAAFRYAFLAKMLNSDWI 711 (712)
T ss_pred hHHHHHHHHHHhhcch---hcCCCEEEEEecCCccccCCchHHHHHHHHHHHHHHHHHhcCccC
Confidence 9999999999865542 246899999999999999999999999999999999999998875
No 3
>PRK10115 protease 2; Provisional
Probab=100.00 E-value=3e-99 Score=882.90 Aligned_cols=667 Identities=24% Similarity=0.425 Sum_probs=568.7
Q ss_pred CCCccccCCceeeeecCccccCCCCcccCC--CCHHHHHHHHHHHHHHHHHHcCC-ccHHHHHHHHHhhhcCCCCCCceE
Q 003878 12 QYPVARRDESVVDDYHGVKIVDPYRWLEDP--DAEEVKDFVQKQVELTDSVLKNC-DVRDKLREKITKLFDSPRYDAPFK 88 (789)
Q Consensus 12 ~~p~~~~~~~~~~~~~g~~~~D~y~wled~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 88 (789)
.||.|+++|+ ++++||+++.|||+||||. ++|+|++||++||+||+++|+++ +++++|.++|++++..+++++|.+
T Consensus 1 ~pP~a~~~~~-~~~~hg~~~~DpY~WLed~~r~~~~v~~~l~~en~~t~~~l~~~~~~~~~l~~~~~~~~~~~~~~~p~~ 79 (686)
T PRK10115 1 MLPKAARIPH-AMTLHGDTRIDNYYWLRDDTRSQPEVLDYLHQENSYGHRVMASQQALQDRILKEIIDRIPQREVSAPYI 79 (686)
T ss_pred CcCCCCCCCe-eEEeCCCEeccCchHhhCCCCCCHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhhcccccCCCCEE
Confidence 3788999994 8999999999999999996 59999999999999999999996 999999999999999999999999
Q ss_pred eCCEEEEEEEcCCCCeeEEEEecCCC----CCceEEeccCCCCCC-CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEE
Q 003878 89 RGNKYFYFHNTGLQPQSVLYVQDSLD----AKAKVLLDPNTLSDD-GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLM 163 (789)
Q Consensus 89 ~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~d~~~~~~~-~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~ 163 (789)
+|+++||+++..+. +++||+|...+ +++++|||+|+++++ +++.++.+.+||||++|||+.+.+|+|+++|+++
T Consensus 80 ~g~~~y~~~~~~g~-~~~~~~r~~~~~~~~~~~~~llD~n~~a~~~~~~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~ 158 (686)
T PRK10115 80 KNGYRYRHIYEPGC-EYAIYQRQSAFSEEWDEWETLLDANKRAAHSEFYTLGGMAITPDNTIMALAEDFLSRRQYGIRFR 158 (686)
T ss_pred ECCEEEEEEEcCCC-ccEEEEEecCCCCCCCCCEEEEcchhhccCCCcEEEeEEEECCCCCEEEEEecCCCcEEEEEEEE
Confidence 99998888877666 57799887642 457999999999655 6799999999999999999999999999999999
Q ss_pred EcCCCceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEE
Q 003878 164 RIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWT 243 (789)
Q Consensus 164 dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~ws 243 (789)
|+.||+.+++.+.++ + .+++|+
T Consensus 159 d~~tg~~l~~~i~~~---------------------------------------------------------~-~~~~w~ 180 (686)
T PRK10115 159 NLETGNWYPELLDNV---------------------------------------------------------E-PSFVWA 180 (686)
T ss_pred ECCCCCCCCccccCc---------------------------------------------------------c-eEEEEe
Confidence 999998777777766 3 569999
Q ss_pred eCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCC
Q 003878 244 HDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCD 323 (789)
Q Consensus 244 pDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~ 323 (789)
+||++|+|++.+. ...++.+||+|++|++++++++|+++.++..+ .....|.|++++++.+....
T Consensus 181 ~D~~~~~y~~~~~-------------~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~- 245 (686)
T PRK10115 181 NDSWTFYYVRKHP-------------VTLLPYQVWRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASAT- 245 (686)
T ss_pred eCCCEEEEEEecC-------------CCCCCCEEEEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCc-
Confidence 9999999998742 12477899999999998899999998765444 35566779999998776654
Q ss_pred CceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccC
Q 003878 324 PVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPE 403 (789)
Q Consensus 324 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~ 403 (789)
.+++++++.+... ..++..+....+..+.. .+.++.||+.+|.++++++|+.+++.+...|++++++
T Consensus 246 -~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~ 312 (686)
T PRK10115 246 -TSEVLLLDAELAD-----------AEPFVFLPRRKDHEYSL-DHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPP 312 (686)
T ss_pred -cccEEEEECcCCC-----------CCceEEEECCCCCEEEE-EeCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECC
Confidence 4678887754311 11122222333444543 3557899999999899999999999854459999999
Q ss_pred CCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC-CeeEEEee--cccCCcEEEEEEcCCCCCcEEEE
Q 003878 404 AERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAIS--ARREDSVVFISFTSFLIPGIVYQ 480 (789)
Q Consensus 404 ~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~-~~~v~~~s--~s~d~~~l~~~~ss~~~P~~ly~ 480 (789)
.++..++++.++. +++++..++++.++|+++++++++ ...|.++ ...+..++ .+++++.++++++|+++|+++|.
T Consensus 313 ~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~ 390 (686)
T PRK10115 313 RENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTRE-VIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFE 390 (686)
T ss_pred CCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCCc-eEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEE
Confidence 7667899999997 899999999999999999987444 3566643 22233333 34677889999999999999999
Q ss_pred EECCCCCceEEEeeeccCCCCCCCCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHH
Q 003878 481 CNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSR 560 (789)
Q Consensus 481 ~dl~tg~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~ 560 (789)
+|+.+++ .++++....+.+++..+.++++++++.|| ++||+++++|++...+++.|+||++||||+.+..+.|+..+
T Consensus 391 ~d~~~~~--~~~l~~~~~~~~~~~~~~~e~v~~~s~DG-~~Ip~~l~~~~~~~~~~~~P~ll~~hGg~~~~~~p~f~~~~ 467 (686)
T PRK10115 391 LDMDTGE--RRVLKQTEVPGFDAANYRSEHLWITARDG-VEVPVSLVYHRKHFRKGHNPLLVYGYGSYGASIDADFSFSR 467 (686)
T ss_pred EECCCCc--EEEEEecCCCCcCccccEEEEEEEECCCC-CEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCccHHH
Confidence 9999884 77788766666888888999999999999 99999999988755567889999999999999999999988
Q ss_pred HHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC
Q 003878 561 TILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRP 640 (789)
Q Consensus 561 ~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p 640 (789)
+.|++ +||+|+++|+|||||||++|+++++..+|.++|+|+++|+++|+++|++||+||+|+|+|+||+|++++++++|
T Consensus 468 ~~l~~-rG~~v~~~n~RGs~g~G~~w~~~g~~~~k~~~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~P 546 (686)
T PRK10115 468 LSLLD-RGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRP 546 (686)
T ss_pred HHHHH-CCcEEEEEEcCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcCh
Confidence 87777 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEecCCccccccccc---ccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCC
Q 003878 641 DLFGCALAHVGVMDMLRYHK---FTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHD 717 (789)
Q Consensus 641 d~f~a~v~~~p~~d~~~~~~---~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D 717 (789)
|+|+|+|+.+|++||++++. +.....|..|||+|.+++.+++|++|||++|++++ .+|++||+||.+|
T Consensus 547 dlf~A~v~~vp~~D~~~~~~~~~~p~~~~~~~e~G~p~~~~~~~~l~~~SP~~~v~~~---------~~P~lLi~~g~~D 617 (686)
T PRK10115 547 ELFHGVIAQVPFVDVVTTMLDESIPLTTGEFEEWGNPQDPQYYEYMKSYSPYDNVTAQ---------AYPHLLVTTGLHD 617 (686)
T ss_pred hheeEEEecCCchhHhhhcccCCCCCChhHHHHhCCCCCHHHHHHHHHcCchhccCcc---------CCCceeEEecCCC
Confidence 99999999999999998863 23344567899999989899999999999999986 5888999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCCCCC
Q 003878 718 DRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGASWV 788 (789)
Q Consensus 718 ~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~~ 788 (789)
+|||++|+.||+++||+. .....++.|++.+++||+....+.+.+++.|.+++|+..++++++.
T Consensus 618 ~RV~~~~~~k~~a~Lr~~-------~~~~~~vl~~~~~~~GHg~~~~r~~~~~~~A~~~aFl~~~~~~~~~ 681 (686)
T PRK10115 618 SQVQYWEPAKWVAKLREL-------KTDDHLLLLCTDMDSGHGGKSGRFKSYEGVAMEYAFLIALAQGTLP 681 (686)
T ss_pred CCcCchHHHHHHHHHHhc-------CCCCceEEEEecCCCCCCCCcCHHHHHHHHHHHHHHHHHHhCCcCC
Confidence 999999999999999987 2223447777779999998888888899999999999999998753
No 4
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-94 Score=770.95 Aligned_cols=635 Identities=37% Similarity=0.625 Sum_probs=529.4
Q ss_pred ccCCCCcccCCCCHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHhhhcCCCCCCceEeCCEEEEEEEcCCCCeeEEEEe
Q 003878 31 IVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDKLREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQ 110 (789)
Q Consensus 31 ~~D~y~wled~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 110 (789)
..|||+||||++++|+++|+++||+.|..+|...+.+..+.+++.++++.++++.|+.+|+++|+++++...++. +|+|
T Consensus 2 ~~DPy~wlEd~~~~eal~wv~~~N~~t~~~L~~~~~~a~~~~~~~~l~d~~~~~~~~~~~~~~ynFw~D~~~p~G-lwr~ 80 (648)
T COG1505 2 VPDPYRWLEDLDSAEALKWVEAQNAKTREFLGEDSARAASDKRLLELWDYEDIPIPFERGGRYYNFWQDALYPRG-LYRR 80 (648)
T ss_pred CCCcchhhhcCCcHHHHHHHHhhhhHHHHHhhcchhhHHHHHHHHHHhhccccCcceeccceeEEeeccccCcce-eEEe
Confidence 579999999999999999999999999999999999999999999999999999999999999999999888874 8998
Q ss_pred cCC------CCCceEEeccCCCCCC--CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceeccccccccccc
Q 003878 111 DSL------DAKAKVLLDPNTLSDD--GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCF 182 (789)
Q Consensus 111 ~~~------~~~~~~l~d~~~~~~~--~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~ 182 (789)
+.+ +++|+||+|+++|+++ .++.+.+++.+||+++++|+++.+|+|+..++++|++||..+.+. +.
T Consensus 81 ttl~syrs~~p~WevLiD~d~Ls~~~g~~v~~~Gas~~~~~~R~l~s~S~gG~D~~~~re~Dlet~~fv~~~--~f---- 154 (648)
T COG1505 81 TTLETYRSAKPEWEVLIDVDALSADLGDKVALGGASVLPDGTRLLYSLSIGGSDAGITREFDLETGEFVEEE--GF---- 154 (648)
T ss_pred ecceeecccCCCceeecCHHHHhhhcCCcEEEccceeCCCCCEEEEEecCCCCcceEEEEEEecccccccCC--Cc----
Confidence 754 4779999999999977 478999999999999999999999999999999999999877653 22
Q ss_pred ccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCC
Q 003878 183 SHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKD 262 (789)
Q Consensus 183 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~ 262 (789)
.+..+.|..++ +++|++...++
T Consensus 155 -----------------------------------------------------~~~~~~wld~d-~~~~~~~~~~~---- 176 (648)
T COG1505 155 -----------------------------------------------------KFPGISWLDDD-GVFVSRYWRPK---- 176 (648)
T ss_pred -----------------------------------------------------cccceEEecCC-CEEEecccCCc----
Confidence 23458999877 88888776543
Q ss_pred CCCCccccCCcccE---EEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCC
Q 003878 263 MDAGTETDSNLYHE---FYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEG 339 (789)
Q Consensus 263 ~~~~~~~~~~~~~~---i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~ 339 (789)
+.|+++++.. ++++++.++++.++.++....-+.+...+.++.|+++++....-.......++ +++-+. .
T Consensus 177 ----e~T~sGy~~~~~~~krg~~f~~~~~dv~V~a~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~-l~~p~~-~- 249 (648)
T COG1505 177 ----EKTPSGYPRVVKRLKRGKLFEGQEGDVMVNARGDQDPWGFRLVLSEDGDFFMLSLWLGTSGKGLIK-LGLPDK-V- 249 (648)
T ss_pred ----ccCccCCchHhhhhhhcccccCCCCceEEecccccCCccceEEEeeccchhhheeeEeccCCCcee-ccCCcc-c-
Confidence 3345666664 45556667888888887766544445556666677666544433222223333 222110 0
Q ss_pred cccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCE
Q 003878 340 LEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQ 419 (789)
Q Consensus 340 ~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~ 419 (789)
...+..++-.....+.....+...+++.+....+ .+.....++|.. ...++.+.+++ ++
T Consensus 250 ---------~~~~~~l~~~~r~dw~~~~~~~g~l~l~~~e~~~----------~g~~~a~~~P~~-~~~le~v~tt~-~~ 308 (648)
T COG1505 250 ---------GYEWGKLVNTLRADWTFADVDYGLLYLLTDEDLE----------LGKVIAEFIPEE-EQSLEQVVTTK-DK 308 (648)
T ss_pred ---------cceeeeeeEeecccccccCcccceEEEEehhccc----------cCceeEEecCCc-ccceeeeEEEc-Ce
Confidence 0011112211111222212222334443333222 222233455554 58899999998 89
Q ss_pred EEEEEEeCCeEEEEEEECCCCceeeecccC-CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCCceEEEeeeccC
Q 003878 420 MIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRETII 498 (789)
Q Consensus 420 lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~-~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~l~~~~~ 498 (789)
+++...+|..++|.++++. |...+.|+++ .+.+...+.+.+++.+++.+++|++|+++|++++.+++ +++++.+..
T Consensus 309 ~va~~l~nv~~~l~v~~~~-g~~~~~v~l~~~ga~~~~~~~~~g~ev~l~~t~F~tP~~~~r~~~~~~e--Le~ik~~p~ 385 (648)
T COG1505 309 LVAGTLDNVSGRLEVYDLK-GERIEEVELPPPGALGMGSADKDGDEVFLAFTSFTTPSTLYRLDLFGGE--LEVIREQPV 385 (648)
T ss_pred EEeeeehhccceEEEeccC-ceEeeecccCCccceeeccCCCCCcEEEEEeecccCCCceEEEecCCce--ehhhhhccC
Confidence 9999999999999999987 6766888887 67776567778899999999999999999999999884 777776543
Q ss_pred CCCCCCCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecC
Q 003878 499 PGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRG 578 (789)
Q Consensus 499 ~~~~~~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG 578 (789)
.|+++++.+++.+.+|.|| ++||++|++ |+.+.+ +.|++||+||||+.+..|.|++.+..||+ +|++++++|+||
T Consensus 386 -~FDa~~~~veQ~~atSkDG-T~IPYFiv~-K~~~~d-~~pTll~aYGGF~vsltP~fs~~~~~WLe-rGg~~v~ANIRG 460 (648)
T COG1505 386 -QFDADNYEVEQFFATSKDG-TRIPYFIVR-KGAKKD-ENPTLLYAYGGFNISLTPRFSGSRKLWLE-RGGVFVLANIRG 460 (648)
T ss_pred -CcCccCceEEEEEEEcCCC-ccccEEEEe-cCCcCC-CCceEEEeccccccccCCccchhhHHHHh-cCCeEEEEeccc
Confidence 6999999999999999999 999999999 887777 99999999999999999999999878887 999999999999
Q ss_pred CCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccc
Q 003878 579 GGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY 658 (789)
Q Consensus 579 ~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~ 658 (789)
|||||++||+++.+.++++.|+||+|+++.|+++|++.|++|+|+|+|+||+|++++++|+||+|.|+|+.+|++||++|
T Consensus 461 GGEfGp~WH~Aa~k~nrq~vfdDf~AVaedLi~rgitspe~lgi~GgSNGGLLvg~alTQrPelfgA~v~evPllDMlRY 540 (648)
T COG1505 461 GGEFGPEWHQAGMKENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVPLLDMLRY 540 (648)
T ss_pred CCccCHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCCCHHHhhhccCCCCceEEEeeeccChhhhCceeeccchhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhcc
Q 003878 659 HKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCT 738 (789)
Q Consensus 659 ~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~ 738 (789)
+.+++|..|+.|||+|++|+.+.+|.+||||+|++.. +.|||+||++|.+|+||+|.|++||+++|+.+
T Consensus 541 h~l~aG~sW~~EYG~Pd~P~d~~~l~~YSPy~nl~~g--------~kYP~~LITTs~~DDRVHPaHarKfaa~L~e~--- 609 (648)
T COG1505 541 HLLTAGSSWIAEYGNPDDPEDRAFLLAYSPYHNLKPG--------QKYPPTLITTSLHDDRVHPAHARKFAAKLQEV--- 609 (648)
T ss_pred cccccchhhHhhcCCCCCHHHHHHHHhcCchhcCCcc--------ccCCCeEEEcccccccccchHHHHHHHHHHhc---
Confidence 9999999999999999999999999999999999996 57999999999999999999999999999998
Q ss_pred CCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhC
Q 003878 739 SLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 739 ~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 784 (789)
+.|+.+++..++||+...+..+.+++.+..++||.+.|+
T Consensus 610 -------~~pv~~~e~t~gGH~g~~~~~~~A~~~a~~~afl~r~L~ 648 (648)
T COG1505 610 -------GAPVLLREETKGGHGGAAPTAEIARELADLLAFLLRTLG 648 (648)
T ss_pred -------CCceEEEeecCCcccCCCChHHHHHHHHHHHHHHHHhhC
Confidence 899999999999999999988889999999999999875
No 5
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=100.00 E-value=1.7e-53 Score=477.93 Aligned_cols=404 Identities=34% Similarity=0.583 Sum_probs=324.1
Q ss_pred CCccccCCceeeeecCccccCCCCcccCCCCHHHHHHHHHHHHHHHHHHcCC-ccHHHHHHHHHhhhcCCCCCCceEeCC
Q 003878 13 YPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNC-DVRDKLREKITKLFDSPRYDAPFKRGN 91 (789)
Q Consensus 13 ~p~~~~~~~~~~~~~g~~~~D~y~wled~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~ 91 (789)
||++++++ +++++||+++.|||+||||.++|+|++||++||+||+++|+++ +++++|+++|++++..++.++|.+.|+
T Consensus 1 P~~~~~~~-~~~~~hg~~~~DpY~WLed~~~~~v~~~~~~en~~t~~~l~~~~~~~~~l~~~~~~~~~~~~~~~p~~~g~ 79 (414)
T PF02897_consen 1 PPTARKPP-VVETLHGVTITDPYRWLEDDDSPEVLAWLKAENAYTEAYLAQLKPLREKLYEELKARINEDRESVPVRRGG 79 (414)
T ss_dssp S-TTS-TT-SEEEETTEEEE-TTGGGGSTTSHHHHHHHHHHHHHHHHHHHTSHTCHHHHHHHHHHHCSSSEE---EEETT
T ss_pred CCCCCCCC-eeeecCCCEeecCchhhcCCCCHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHhhccCCCccccEEECC
Confidence 45566666 5899999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred EEEEEEEcCCCCeeEEEEecCC--CCC-ceEEeccCCCCCCC-cEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCC
Q 003878 92 KYFYFHNTGLQPQSVLYVQDSL--DAK-AKVLLDPNTLSDDG-TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIED 167 (789)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~l~d~~~~~~~~-~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~t 167 (789)
++||+++.+++++.++|||... +++ +++|||+|+|++++ +..++.+++||||++|||+++.+|+|+++|+++|++|
T Consensus 80 ~~y~~~~~~~~~~~~~~r~~~~~~~~~~~evllD~n~l~~~~~~~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~t 159 (414)
T PF02897_consen 80 YYYYSRNQGGKNYPVLYRRKTDEEDGPEEEVLLDPNELAKDGGYVSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLET 159 (414)
T ss_dssp EEEEEEE-SS-SS-EEEEEETTS-TS-C-EEEEEGGGGSTTSS-EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTT
T ss_pred eEEEEEEcCCCceEEEEEEecccCCCCceEEEEcchHhhccCceEEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCC
Confidence 9999999999999999999876 455 59999999999987 7778899999999999999999999999999999999
Q ss_pred CceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCc
Q 003878 168 QIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSK 247 (789)
Q Consensus 168 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~ 247 (789)
|+.+.+.+.++ +..+++|++||+
T Consensus 160 g~~l~d~i~~~---------------------------------------------------------~~~~~~W~~d~~ 182 (414)
T PF02897_consen 160 GKFLPDGIENP---------------------------------------------------------KFSSVSWSDDGK 182 (414)
T ss_dssp TEEEEEEEEEE---------------------------------------------------------ESEEEEECTTSS
T ss_pred CcCcCCccccc---------------------------------------------------------ccceEEEeCCCC
Confidence 99888777765 234599999999
Q ss_pred EEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceE
Q 003878 248 GFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNK 327 (789)
Q Consensus 248 ~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~ 327 (789)
.|+|++.+..... ++++.+.+|++|++|++..++.+||++++++.++.++.+|+||++|++.+..+.. .++
T Consensus 183 ~~~y~~~~~~~~~--------~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~-~s~ 253 (414)
T PF02897_consen 183 GFFYTRFDEDQRT--------SDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS-ESE 253 (414)
T ss_dssp EEEEEECSTTTSS---------CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS-EEE
T ss_pred EEEEEEeCccccc--------ccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcccc-CCe
Confidence 9999998763210 0356799999999999999999999998876646689999999999999987764 599
Q ss_pred EEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC--CeE-EeccCC
Q 003878 328 VYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN--DWF-EVIPEA 404 (789)
Q Consensus 328 i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~--~~~-~l~~~~ 404 (789)
+|++++.++.. ....+..+..........+.+.|+.||++||.++++++|++++++.+. .|. .++++.
T Consensus 254 v~~~d~~~~~~---------~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~ 324 (414)
T PF02897_consen 254 VYLLDLDDGGS---------PDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPED 324 (414)
T ss_dssp EEEEECCCTTT---------SS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--S
T ss_pred EEEEeccccCC---------CcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCC
Confidence 99999987410 022345555544444444566699999999999999999999999876 355 777777
Q ss_pred CCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC-CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEEC
Q 003878 405 ERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAISARREDSVVFISFTSFLIPGIVYQCNL 483 (789)
Q Consensus 405 ~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~-~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl 483 (789)
+...+.++..++ ++|++..+.++.++|.++++..+.....+.++ .+.+.+++.+++++.++|+++|+++|+++|.||+
T Consensus 325 ~~~~l~~~~~~~-~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~ 403 (414)
T PF02897_consen 325 EDVSLEDVSLFK-DYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDL 403 (414)
T ss_dssp SSEEEEEEEEET-TEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEET
T ss_pred CceeEEEEEEEC-CEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence 667899999998 89999999999999999999844554677776 6777788888999999999999999999999999
Q ss_pred CCCCceEEEeee
Q 003878 484 KTETPEMKIFRE 495 (789)
Q Consensus 484 ~tg~~~~~~l~~ 495 (789)
.+++ .+++++
T Consensus 404 ~t~~--~~~~k~ 413 (414)
T PF02897_consen 404 ATGE--LTLLKQ 413 (414)
T ss_dssp TTTC--EEEEEE
T ss_pred CCCC--EEEEEe
Confidence 9995 777764
No 6
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=100.00 E-value=9.1e-43 Score=405.89 Aligned_cols=386 Identities=18% Similarity=0.213 Sum_probs=290.6
Q ss_pred EEEecCCCEEEEEECCCC----CCceEEEEECCCCCCeEEeccCCC----CceeeeEEEecCCEEEEEEEe-CCeEEEEE
Q 003878 364 EVIANDDTVFTFLTNKDA----PKYKIIRVDLKEPNDWFEVIPEAE----RDVLESATAVNLNQMIVSYLS-DVKYVLQI 434 (789)
Q Consensus 364 ~~~s~dG~~l~~~tn~~~----~~~~L~~~dl~~~~~~~~l~~~~~----~~~i~~v~~~~~~~lv~~~~~-~g~~~L~~ 434 (789)
..+.++|+.+++..+... ....++.++.+.+. ........+ ...+... .+++.+++.... .+...+..
T Consensus 221 ~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~l~~ 297 (620)
T COG1506 221 LAFDADGKSIALLGTESDRGLAEGDFILLLDGELGE-VDGDLSSGDDTRGAWAVEGG--LDGDGLLFIATDGGGSSPLFR 297 (620)
T ss_pred eeeCCCCCeeEEeccCCccCccccceEEEEeccccc-cceeeccCCcccCcHHhccc--cCCCcEEEEEecCCCceEEEE
Confidence 447889998888877532 23455555523222 111111111 0011111 233566666665 45445555
Q ss_pred EECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCCceEEEeeeccCCCCCCC-CCcEEEEEE
Q 003878 435 RDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDRS-EFHVHQVFV 513 (789)
Q Consensus 435 ~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~l~~~~~~~~~~~-~~~~~~~~~ 513 (789)
.+...+.. ..+..+.+.+..++. +++.+++.++++..|+++|.++. .. ...+.......+... ....|.+++
T Consensus 298 ~~~~~~~~-~~~~~~~~~v~~f~~--~~~~~~~~~s~~~~p~~i~~~~~-~~---~~~~~~~~~~~~~~~~~~~~e~~~~ 370 (620)
T COG1506 298 VDDLGGGV-EGLSGDDGGVPGFDV--DGRKLALAYSSPTEPPEIYLYDR-GE---EAKLTSSNNSGLKKVKLAEPEPVTY 370 (620)
T ss_pred EeccCCce-eeecCCCceEEEEee--CCCEEEEEecCCCCccceEEEcC-CC---ceEEeecccccccccccCCceEEEE
Confidence 55432322 334444466655554 88999999999999999999997 22 222222222222222 346789999
Q ss_pred ecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhccccc
Q 003878 514 PSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALA 593 (789)
Q Consensus 514 ~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~ 593 (789)
++.|| .+|+++++.|.+..+.+++|+||++||||.......|......++. +||+|+.+|+||+++||++|.++....
T Consensus 371 ~~~dG-~~i~~~l~~P~~~~~~k~yP~i~~~hGGP~~~~~~~~~~~~q~~~~-~G~~V~~~n~RGS~GyG~~F~~~~~~~ 448 (620)
T COG1506 371 KSNDG-ETIHGWLYKPPGFDPRKKYPLIVYIHGGPSAQVGYSFNPEIQVLAS-AGYAVLAPNYRGSTGYGREFADAIRGD 448 (620)
T ss_pred EcCCC-CEEEEEEecCCCCCCCCCCCEEEEeCCCCccccccccchhhHHHhc-CCeEEEEeCCCCCCccHHHHHHhhhhc
Confidence 99999 9999999999998877889999999999988888888876655554 999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccch--hhc
Q 003878 594 KKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWV--SDF 671 (789)
Q Consensus 594 ~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~--~e~ 671 (789)
++...++|+++++++|.+.+++|++||+|+|+|+||+|+++++++.| +|+|+++..+.++.+.+........+. .+.
T Consensus 449 ~g~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (620)
T COG1506 449 WGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTP-RFKAAVAVAGGVDWLLYFGESTEGLRFDPEEN 527 (620)
T ss_pred cCCccHHHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHHhcCc-hhheEEeccCcchhhhhccccchhhcCCHHHh
Confidence 99999999999999999999999999999999999999999999987 899999999988877665432221111 111
Q ss_pred -CCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEE
Q 003878 672 -GCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPII 750 (789)
Q Consensus 672 -g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 750 (789)
+.+.. ..+.+.+.||+.+++++ .+|+|++||++|.|||.+|+++|+++|+.. |++++
T Consensus 528 ~~~~~~--~~~~~~~~sp~~~~~~i----------~~P~LliHG~~D~~v~~~q~~~~~~aL~~~----------g~~~~ 585 (620)
T COG1506 528 GGGPPE--DREKYEDRSPIFYADNI----------KTPLLLIHGEEDDRVPIEQAEQLVDALKRK----------GKPVE 585 (620)
T ss_pred CCCccc--ChHHHHhcChhhhhccc----------CCCEEEEeecCCccCChHHHHHHHHHHHHc----------CceEE
Confidence 22221 23457899999999997 899999999999999999999999999998 99999
Q ss_pred EEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCC
Q 003878 751 GRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 785 (789)
Q Consensus 751 l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 785 (789)
++++|++||++..+.+ ..+.+..+++|+.++++.
T Consensus 586 ~~~~p~e~H~~~~~~~-~~~~~~~~~~~~~~~~~~ 619 (620)
T COG1506 586 LVVFPDEGHGFSRPEN-RVKVLKEILDWFKRHLKQ 619 (620)
T ss_pred EEEeCCCCcCCCCchh-HHHHHHHHHHHHHHHhcC
Confidence 9999999999998666 478999999999999975
No 7
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-31 Score=284.99 Aligned_cols=333 Identities=19% Similarity=0.199 Sum_probs=257.8
Q ss_pred EEEEEEEeCCe--EEEEEEECC-CCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCCceEEEeee
Q 003878 419 QMIVSYLSDVK--YVLQIRDLK-NGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRE 495 (789)
Q Consensus 419 ~lv~~~~~~g~--~~L~~~dl~-tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~l~~ 495 (789)
-+|+....++. .+||+..++ .|+. .+++.+..+. ...++.+=+.++..++|-..|+.+..|.+.+++. ..+.++
T Consensus 517 LVYf~gt~d~PlE~hLyvvsye~~g~~-~rlt~~g~sh-~~~l~~~~d~fv~~~~sv~sP~cv~~y~ls~~~~-~~l~~q 593 (867)
T KOG2281|consen 517 LVYFVGTKDTPLEHHLYVVSYENPGEI-ARLTEPGYSH-SCELDQQCDHFVSYYSSVGSPPCVSLYSLSWPEN-DPLPKQ 593 (867)
T ss_pred EEEEEccCCCCceeeEEEEEEecCCce-eeccCCCccc-chhhhhhhhhHhhhhhcCCCCceEEEEeccCCcc-Ccccch
Confidence 35667777764 489998887 5665 6676542221 2234444455666678889999999999877642 111111
Q ss_pred cc-----CC-CCCCCCCcE-EEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCC-CCCCH---HHHHHH
Q 003878 496 TI-----IP-GFDRSEFHV-HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT-PSFSV---SRTILM 564 (789)
Q Consensus 496 ~~-----~~-~~~~~~~~~-~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~-~~~~~---~~~~~l 564 (789)
.. .. .-.+.+|+. |.+.+.++.| ..+.+.++.|.++++.+++|+++++|||++...- ..|.. .+...|
T Consensus 594 ~~~~~~l~~~~~~~Pdy~p~eif~fqs~tg-~~lYgmiyKPhn~~pgkkYptvl~VYGGP~VQlVnnsfkgi~ylR~~~L 672 (867)
T KOG2281|consen 594 VSFWAILVSGAPPPPDYVPPEIFSFQSKTG-LTLYGMIYKPHNFQPGKKYPTVLNVYGGPGVQLVNNSFKGIQYLRFCRL 672 (867)
T ss_pred hhHHHHHHhcCCCCCccCChhheeeecCCC-cEEEEEEEccccCCCCCCCceEEEEcCCCceEEeeccccceehhhhhhh
Confidence 10 00 112334543 6688899899 9999999999999999999999999999988653 34432 345667
Q ss_pred HcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHc-CCCCCCcEEEEeeChHHHHHHHHHHhCCCce
Q 003878 565 RHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISA-GYTQSRKLCIEGGSNGGLLVGACINQRPDLF 643 (789)
Q Consensus 565 ~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f 643 (789)
+.+||+|+++|-||+--.|-.|-...+...++...+|.+.++++|+++ |++|.+||+|.|+|+||+|++++++++|+.|
T Consensus 673 aslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGYLSlm~L~~~P~If 752 (867)
T KOG2281|consen 673 ASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYLSLMGLAQYPNIF 752 (867)
T ss_pred hhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccchheeEeccccccHHHHHHhhcCccee
Confidence 779999999999999999999999888899999999999999999999 5999999999999999999999999999999
Q ss_pred eEEEecCCcccccccccccCCccchhhc-CCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCC-eEEEEecCCCCCCC
Q 003878 644 GCALAHVGVMDMLRYHKFTIGHAWVSDF-GCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYP-STLLLTADHDDRVV 721 (789)
Q Consensus 644 ~a~v~~~p~~d~~~~~~~~~~~~~~~e~-g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~p-p~Li~~g~~D~~V~ 721 (789)
+++|+.+|++++..+.. .+.+.| |.|+..+.- +.+-|-..+|.+. +..| .+|++||.-|..|+
T Consensus 753 rvAIAGapVT~W~~YDT-----gYTERYMg~P~~nE~g--Y~agSV~~~Vekl--------pdepnRLlLvHGliDENVH 817 (867)
T KOG2281|consen 753 RVAIAGAPVTDWRLYDT-----GYTERYMGYPDNNEHG--YGAGSVAGHVEKL--------PDEPNRLLLVHGLIDENVH 817 (867)
T ss_pred eEEeccCcceeeeeecc-----cchhhhcCCCccchhc--ccchhHHHHHhhC--------CCCCceEEEEecccccchh
Confidence 99999999999987764 233445 567443321 2455666777765 2334 49999999999999
Q ss_pred cHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHH
Q 003878 722 PLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 781 (789)
Q Consensus 722 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 781 (789)
+.|...++.+|-++ |+|.+|.+||++-|+...+... +..-++++.|+.+
T Consensus 818 F~Hts~Lvs~lvka----------gKpyeL~IfP~ERHsiR~~es~-~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 818 FAHTSRLVSALVKA----------GKPYELQIFPNERHSIRNPESG-IYYEARLLHFLQE 866 (867)
T ss_pred hhhHHHHHHHHHhC----------CCceEEEEccccccccCCCccc-hhHHHHHHHHHhh
Confidence 99999999999998 9999999999999999877664 5666788888864
No 8
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=100.00 E-value=2.6e-32 Score=277.71 Aligned_cols=209 Identities=32% Similarity=0.472 Sum_probs=174.3
Q ss_pred CCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHH
Q 003878 554 PSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVG 633 (789)
Q Consensus 554 ~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~ 633 (789)
|+|+. ..++|+++||+|+.+|+||+++||.+|+..+....+...++|+++++++|++++.+|++||+|+|+|+||++++
T Consensus 1 ~~f~~-~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~ 79 (213)
T PF00326_consen 1 PSFNW-NAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLAL 79 (213)
T ss_dssp ---SH-HHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHH
T ss_pred CeeeH-HHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccc
Confidence 45673 46788779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCceeEEEecCCccccccccccc--CCccchhhcCCC-CcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEE
Q 003878 634 ACINQRPDLFGCALAHVGVMDMLRYHKFT--IGHAWVSDFGCS-EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTL 710 (789)
Q Consensus 634 ~~~~~~pd~f~a~v~~~p~~d~~~~~~~~--~~~~~~~e~g~p-~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~L 710 (789)
++++++|++|+|+|+.+|++|+..+...+ ....+..++|.+ ..++.+..+..+++..++. . .+|+|
T Consensus 80 ~~~~~~~~~f~a~v~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~----------~~P~l 148 (213)
T PF00326_consen 80 LAATQHPDRFKAAVAGAGVSDLFSYYGTTDIYTKAEYLEYGDPWDNPEFYRELSPISPADNVQ-I----------KPPVL 148 (213)
T ss_dssp HHHHHTCCGSSEEEEESE-SSTTCSBHHTCCHHHGHHHHHSSTTTSHHHHHHHHHGGGGGGCG-G----------GSEEE
T ss_pred hhhcccceeeeeeeccceecchhcccccccccccccccccCccchhhhhhhhhcccccccccc-C----------CCCEE
Confidence 99999999999999999999998876543 222245667877 4555554444444444332 4 79999
Q ss_pred EEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCC
Q 003878 711 LLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 785 (789)
Q Consensus 711 i~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 785 (789)
++||++|.+||++++.+++++|++. |.+++++++|++||++..+..+ .+...++++||+++|+.
T Consensus 149 i~hG~~D~~Vp~~~s~~~~~~L~~~----------g~~~~~~~~p~~gH~~~~~~~~-~~~~~~~~~f~~~~l~~ 212 (213)
T PF00326_consen 149 IIHGENDPRVPPSQSLRLYNALRKA----------GKPVELLIFPGEGHGFGNPENR-RDWYERILDFFDKYLKK 212 (213)
T ss_dssp EEEETTBSSSTTHHHHHHHHHHHHT----------TSSEEEEEETT-SSSTTSHHHH-HHHHHHHHHHHHHHTT-
T ss_pred EEccCCCCccCHHHHHHHHHHHHhc----------CCCEEEEEcCcCCCCCCCchhH-HHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999998 9999999999999999887776 58999999999999985
No 9
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=5.3e-28 Score=283.78 Aligned_cols=387 Identities=17% Similarity=0.221 Sum_probs=269.6
Q ss_pred EecCC-CEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEec-CCEEEEEEEeC--CeEEEEEEECCCCc
Q 003878 366 IANDD-TVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN-LNQMIVSYLSD--VKYVLQIRDLKNGS 441 (789)
Q Consensus 366 ~s~dG-~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~-~~~lv~~~~~~--g~~~L~~~dl~tG~ 441 (789)
++.|+ ..+++....+++-.++.......+.....++... ........+++ .+.+++..... +..+|+.+++.++.
T Consensus 347 ~~~d~~~~~~~~~~~~~~~~hi~~~~~~~~~~~~~lt~g~-w~v~~i~~~~~~~~~i~f~~~~~~~~~~~ly~i~~~~~~ 425 (755)
T KOG2100|consen 347 FSSDGSSYLKVDSVSDGGYNHIAYLKLSNGSEPRMLTSGN-WEVTSILGYDKDSNRIYFDAYEEDPSERHLYSISLGSGT 425 (755)
T ss_pred EeecCCceeEEEeeccCCEEEEEEEEcCCCCccccccccc-eEEEEeccccCCCceEEEEecCCCCCceEEEEEEccccc
Confidence 45554 4444444444334456666555542123333222 22222222332 36777777775 45588999988655
Q ss_pred eeeecccC----CeeEEEeecccCCcEEEEEEcCCCCCcEEEE-EECCCCCceEEEeeec-cCC-CCCCCCC---cEEEE
Q 003878 442 LLHQLPIE----IGSVNAISARREDSVVFISFTSFLIPGIVYQ-CNLKTETPEMKIFRET-IIP-GFDRSEF---HVHQV 511 (789)
Q Consensus 442 ~~~~l~~~----~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~-~dl~tg~~~~~~l~~~-~~~-~~~~~~~---~~~~~ 511 (789)
. ..++.. ......++++...+.+......+..|...+- .+....+ ....|... .+. .+....+ ..+.+
T Consensus 426 ~-~~lt~~~~~~~~~~~~~~~~~~~~~~v~~~~gP~~p~~~~~~~~~~~~~-~~~~Le~n~~~~~~~~~~~~p~~~~~~i 503 (755)
T KOG2100|consen 426 V-ESLTCSLITGPCTYLSVSFSKSAKYYVLSCSGPKVPDGQLTRHSSKNSK-TIVVLETNEELKKTIENVALPIVEFGKI 503 (755)
T ss_pred c-ccccccCCCCcceEEEEecCCcccEEEEEccCCCCCcceeeccccccce-EEEEeccChhhHHHhhcccCCcceeEEE
Confidence 4 345433 2344456667777777777777777744111 1111111 12222211 111 1111112 22333
Q ss_pred EEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCC-CCCCHHH-HHHHHcCCeEEEEEeecCCCCCChhHHhc
Q 003878 512 FVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT-PSFSVSR-TILMRHLGAVFCIANIRGGGEYGEEWHKG 589 (789)
Q Consensus 512 ~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~-~~~~~~~-~~~l~~~G~~v~~~~~RG~g~~g~~~~~~ 589 (789)
.+ || ....+.++.|+++.+.++.|+||..|||+++..- ..|...+ ...+..+|++|+.+|+||+|++|..+..+
T Consensus 504 ~~---~~-~~~~~~~~lP~~~~~~~kyPllv~~yGGP~sq~v~~~~~~~~~~~~~s~~g~~v~~vd~RGs~~~G~~~~~~ 579 (755)
T KOG2100|consen 504 EI---DG-ITANAILILPPNFDPSKKYPLLVVVYGGPGSQSVTSKFSVDWNEVVVSSRGFAVLQVDGRGSGGYGWDFRSA 579 (755)
T ss_pred Ee---cc-EEEEEEEecCCCCCCCCCCCEEEEecCCCCcceeeeeEEecHHHHhhccCCeEEEEEcCCCcCCcchhHHHH
Confidence 33 88 9999999999999888899999999999984332 3333333 23466799999999999999999999999
Q ss_pred ccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC-CceeEEEecCCcccccccccccCCccch
Q 003878 590 GALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRP-DLFGCALAHVGVMDMLRYHKFTIGHAWV 668 (789)
Q Consensus 590 ~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p-d~f~a~v~~~p~~d~~~~~~~~~~~~~~ 668 (789)
..+..+....+|.+.+++++++.+++|++||+|+|+|+||++++.++...| +.|+|+++.+|++|+. ++..+ +.
T Consensus 580 ~~~~lG~~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd~~-~yds~----~t 654 (755)
T KOG2100|consen 580 LPRNLGDVEVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTDWL-YYDST----YT 654 (755)
T ss_pred hhhhcCCcchHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEecceeeee-eeccc----cc
Confidence 999999999999999999999999999999999999999999999999988 8999999999999998 44322 23
Q ss_pred hhc-CCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCC
Q 003878 669 SDF-GCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTN 747 (789)
Q Consensus 669 ~e~-g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~ 747 (789)
++| |.|..... .+...+|..++... ..|-.|++||+.|++|+++|+.+++++|+.+ |.
T Consensus 655 erymg~p~~~~~--~y~e~~~~~~~~~~---------~~~~~LliHGt~DdnVh~q~s~~~~~aL~~~----------gv 713 (755)
T KOG2100|consen 655 ERYMGLPSENDK--GYEESSVSSPANNI---------KTPKLLLIHGTEDDNVHFQQSAILIKALQNA----------GV 713 (755)
T ss_pred HhhcCCCccccc--hhhhccccchhhhh---------ccCCEEEEEcCCcCCcCHHHHHHHHHHHHHC----------CC
Confidence 455 66633222 14566777777665 3445799999999999999999999999998 99
Q ss_pred cEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCCC
Q 003878 748 PIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGAS 786 (789)
Q Consensus 748 ~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 786 (789)
++.+.+||+++|++...... ...+..+..||..+++..
T Consensus 714 ~~~~~vypde~H~is~~~~~-~~~~~~~~~~~~~~~~~~ 751 (755)
T KOG2100|consen 714 PFRLLVYPDENHGISYVEVI-SHLYEKLDRFLRDCFGSP 751 (755)
T ss_pred ceEEEEeCCCCcccccccch-HHHHHHHHHHHHHHcCcc
Confidence 99999999999999876654 577888999999777654
No 10
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=99.83 E-value=5.4e-19 Score=186.82 Aligned_cols=245 Identities=16% Similarity=0.122 Sum_probs=165.6
Q ss_pred EEEEEEecC-CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEee--cCCCCCC-
Q 003878 508 VHQVFVPSK-DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANI--RGGGEYG- 583 (789)
Q Consensus 508 ~~~~~~~s~-dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~--RG~g~~g- 583 (789)
.+.+.+.+. -+ .++++.++.|++.. .++.|+|+++||..+......+......++++.|++|++||. ||.+..|
T Consensus 13 ~~~~~~~s~~~~-~~~~~~v~~P~~~~-~~~~P~vvllHG~~~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~~~g~~~~~~ 90 (275)
T TIGR02821 13 QGFYRHKSETCG-VPMTFGVFLPPQAA-AGPVPVLWYLSGLTCTHENFMIKAGAQRFAAEHGLALVAPDTSPRGTGIAGE 90 (275)
T ss_pred EEEEEEeccccC-CceEEEEEcCCCcc-CCCCCEEEEccCCCCCccHHHhhhHHHHHHhhcCcEEEEeCCCCCcCCCCCC
Confidence 444555554 46 78889999998743 356899999999876655444333345666667999999997 6665333
Q ss_pred -hhH--------Hhcccc-cC--CcchHHHHHHHHHHHHHc-CCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecC
Q 003878 584 -EEW--------HKGGAL-AK--KQNCFDDFISASEYLISA-GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHV 650 (789)
Q Consensus 584 -~~~--------~~~~~~-~~--~~~~~~D~~~~~~~L~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~ 650 (789)
..| +..... .. .......+...+..+++. .-+|+++++++|+|+||++++.++.++|++|+++++.+
T Consensus 91 ~~~w~~g~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~~~~~ 170 (275)
T TIGR02821 91 DDAWDFGKGAGFYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDRFKSVSAFA 170 (275)
T ss_pred cccccccCCccccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCcccceEEEEEC
Confidence 122 211100 01 112233334455555554 33788999999999999999999999999999999999
Q ss_pred CcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCc-HHHHHHH
Q 003878 651 GVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVP-LHSLKLL 729 (789)
Q Consensus 651 p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~-~~~~~~~ 729 (789)
|++++... ... .......+|.+. +. +..++|...+... ...||+|+.||..|++|+. .++..+.
T Consensus 171 ~~~~~~~~-~~~-~~~~~~~l~~~~--~~---~~~~~~~~~~~~~--------~~~~plli~~G~~D~~v~~~~~~~~~~ 235 (275)
T TIGR02821 171 PIVAPSRC-PWG-QKAFSAYLGADE--AA---WRSYDASLLVADG--------GRHSTILIDQGTADQFLDEQLRPDAFE 235 (275)
T ss_pred CccCcccC-cch-HHHHHHHhcccc--cc---hhhcchHHHHhhc--------ccCCCeeEeecCCCcccCccccHHHHH
Confidence 99885421 100 001112233321 11 2345565544432 1368999999999999999 6889999
Q ss_pred HHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHh
Q 003878 730 ATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKML 783 (789)
Q Consensus 730 ~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 783 (789)
++|+++ |.++++.++++++|++.. ......+.+.|+.+++
T Consensus 236 ~~l~~~----------g~~v~~~~~~g~~H~f~~----~~~~~~~~~~~~~~~~ 275 (275)
T TIGR02821 236 QACRAA----------GQALTLRRQAGYDHSYYF----IASFIADHLRHHAERL 275 (275)
T ss_pred HHHHHc----------CCCeEEEEeCCCCccchh----HHHhHHHHHHHHHhhC
Confidence 999988 999999999999999854 3456677788887653
No 11
>PLN02442 S-formylglutathione hydrolase
Probab=99.82 E-value=3.7e-19 Score=188.49 Aligned_cols=246 Identities=11% Similarity=0.050 Sum_probs=161.1
Q ss_pred cEEEEEEec-CCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCC----
Q 003878 507 HVHQVFVPS-KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGE---- 581 (789)
Q Consensus 507 ~~~~~~~~s-~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~---- 581 (789)
..+.+++.| .-| .++++.+++|+. ...++.|+|+++||..+.............+++..|++|+++|..+.|.
T Consensus 17 ~~~~~~~~s~~l~-~~~~~~vy~P~~-~~~~~~Pvv~~lHG~~~~~~~~~~~~~~~~~~~~~g~~Vv~pd~~~~g~~~~~ 94 (283)
T PLN02442 17 FNRRYKHFSSTLG-CSMTFSVYFPPA-SDSGKVPVLYWLSGLTCTDENFIQKSGAQRAAAARGIALVAPDTSPRGLNVEG 94 (283)
T ss_pred EEEEEEEeccccC-CceEEEEEcCCc-ccCCCCCEEEEecCCCcChHHHHHhhhHHHHHhhcCeEEEecCCCCCCCCCCC
Confidence 345555555 356 799999999984 3456899999999987665433333334567777899999999754331
Q ss_pred --------CChhHHhccc-ccCCc-c----hHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEE
Q 003878 582 --------YGEEWHKGGA-LAKKQ-N----CFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCAL 647 (789)
Q Consensus 582 --------~g~~~~~~~~-~~~~~-~----~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v 647 (789)
+|..++.... ..++. . ..+++...++... ..+|+++++|+|+|+||++++.++.++|++|++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~--~~~~~~~~~i~G~S~GG~~a~~~a~~~p~~~~~~~ 172 (283)
T PLN02442 95 EADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSDNF--DQLDTSRASIFGHSMGGHGALTIYLKNPDKYKSVS 172 (283)
T ss_pred CccccccCCCcceeeccccCCCcccchhhhHHHHHHHHHHHHH--HhcCCCceEEEEEChhHHHHHHHHHhCchhEEEEE
Confidence 1222211111 11111 1 1233333333322 23688999999999999999999999999999999
Q ss_pred ecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcH-HHH
Q 003878 648 AHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPL-HSL 726 (789)
Q Consensus 648 ~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~-~~~ 726 (789)
+.+|++|+... ... .......+|.+. +.++.....+|+.++... .+|+|++||++|.+|+.. ++.
T Consensus 173 ~~~~~~~~~~~-~~~-~~~~~~~~g~~~--~~~~~~d~~~~~~~~~~~----------~~pvli~~G~~D~~v~~~~~s~ 238 (283)
T PLN02442 173 AFAPIANPINC-PWG-QKAFTNYLGSDK--ADWEEYDATELVSKFNDV----------SATILIDQGEADKFLKEQLLPE 238 (283)
T ss_pred EECCccCcccC-chh-hHHHHHHcCCCh--hhHHHcChhhhhhhcccc----------CCCEEEEECCCCccccccccHH
Confidence 99999885421 111 001122345432 223222233344444333 689999999999999974 688
Q ss_pred HHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhC
Q 003878 727 KLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 727 ~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 784 (789)
.+++++++. |.+++++++++++|.+. ....+..+.+.|..++++
T Consensus 239 ~~~~~l~~~----------g~~~~~~~~pg~~H~~~----~~~~~i~~~~~~~~~~~~ 282 (283)
T PLN02442 239 NFEEACKEA----------GAPVTLRLQPGYDHSYF----FIATFIDDHINHHAQALK 282 (283)
T ss_pred HHHHHHHHc----------CCCeEEEEeCCCCccHH----HHHHHHHHHHHHHHHHhc
Confidence 999999988 88999999999999864 234556666777777664
No 12
>PRK10566 esterase; Provisional
Probab=99.82 E-value=4.4e-19 Score=184.92 Aligned_cols=232 Identities=15% Similarity=0.117 Sum_probs=149.2
Q ss_pred EEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCC-ChhHHhcccc--cCCcc
Q 003878 521 KIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEY-GEEWHKGGAL--AKKQN 597 (789)
Q Consensus 521 ~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~-g~~~~~~~~~--~~~~~ 597 (789)
.++...+.|++. .+++.|+||++||..+... .|. .....|+++||.|+++|+||.|.. +..-...... .....
T Consensus 11 ~~~~~~~~p~~~-~~~~~p~vv~~HG~~~~~~--~~~-~~~~~l~~~G~~v~~~d~~g~G~~~~~~~~~~~~~~~~~~~~ 86 (249)
T PRK10566 11 GIEVLHAFPAGQ-RDTPLPTVFFYHGFTSSKL--VYS-YFAVALAQAGFRVIMPDAPMHGARFSGDEARRLNHFWQILLQ 86 (249)
T ss_pred CcceEEEcCCCC-CCCCCCEEEEeCCCCcccc--hHH-HHHHHHHhCCCEEEEecCCcccccCCCccccchhhHHHHHHH
Confidence 355666777642 2356899999999755432 333 345666669999999999997642 1100000000 00113
Q ss_pred hHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEe-cCCcccccccccccCCccch-hhcCCCC
Q 003878 598 CFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALA-HVGVMDMLRYHKFTIGHAWV-SDFGCSE 675 (789)
Q Consensus 598 ~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~-~~p~~d~~~~~~~~~~~~~~-~e~g~p~ 675 (789)
..+|+.++++++.+++.+|++||+++|+|+||++++.++.++|++.++++. ..+.+.......+. .... .+.....
T Consensus 87 ~~~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 164 (249)
T PRK10566 87 NMQEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPWVKCVASLMGSGYFTSLARTLFP--PLIPETAAQQAE 164 (249)
T ss_pred HHHHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCCeeEEEEeeCcHHHHHHHHHhcc--cccccccccHHH
Confidence 467888899999998889999999999999999999999998876544432 23322211000000 0000 0000000
Q ss_pred cHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCC--cEEEEE
Q 003878 676 EEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTN--PIIGRI 753 (789)
Q Consensus 676 ~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~--~~~l~~ 753 (789)
..+.+..+..+++...+.++ ...|+|++||++|..||+.++.++.++++.+ |. .+++..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~i---------~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~----------g~~~~~~~~~ 225 (249)
T PRK10566 165 FNNIVAPLAEWEVTHQLEQL---------ADRPLLLWHGLADDVVPAAESLRLQQALRER----------GLDKNLTCLW 225 (249)
T ss_pred HHHHHHHHhhcChhhhhhhc---------CCCCEEEEEcCCCCcCCHHHHHHHHHHHHhc----------CCCcceEEEe
Confidence 11122233445554445443 2479999999999999999999999999876 65 478899
Q ss_pred eCCCCcCCCCchhhHHHHHHHHHHHHHHHh
Q 003878 754 ERKAGHGVGLPTQKMIDEAADRYGFMAKML 783 (789)
Q Consensus 754 ~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 783 (789)
++++||.+. .+....+.+||.++|
T Consensus 226 ~~~~~H~~~------~~~~~~~~~fl~~~~ 249 (249)
T PRK10566 226 EPGVRHRIT------PEALDAGVAFFRQHL 249 (249)
T ss_pred cCCCCCccC------HHHHHHHHHHHHhhC
Confidence 999999874 245678999999875
No 13
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.81 E-value=3.3e-18 Score=192.45 Aligned_cols=296 Identities=16% Similarity=0.127 Sum_probs=204.5
Q ss_pred HHHHHHHHHcCCccHHHHHHHHHhhhcCCCCCCceEeCCEEEEEEEcCCCCeeEEEEecCCCCCceEEeccCCCCCCCcE
Q 003878 53 QVELTDSVLKNCDVRDKLREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTA 132 (789)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~ 132 (789)
|+.++++++...+.+..+..+|...+.....+.|...+++++|....+.+.+..||+.+..+++.+.|++.+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~a~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~------- 190 (417)
T TIGR02800 118 LQLLGKQYTVTASQLRRVAHRIADAIYEKLTGERGAFSTRIAYVSKSGKSRRYELQVADYDGANPQTITRSRE------- 190 (417)
T ss_pred EEeeeeeEEcCHHHHHHHHHHHHHHHHHHhcCCCCCcCCEEEEEEEeCCCCcceEEEEcCCCCCCEEeecCCC-------
Confidence 5566677776667778888888888777666777778899999988776667889998865566778887663
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceeccc-ccccccccccCccceeeeeeccccccccccccccccc
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA-LSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
.+..+.|||||++|||+....| ..+|+++|+++|+..... ...
T Consensus 191 ~~~~p~~Spdg~~la~~~~~~~--~~~i~v~d~~~g~~~~~~~~~~---------------------------------- 234 (417)
T TIGR02800 191 PILSPAWSPDGQKLAYVSFESG--KPEIYVQDLATGQREKVASFPG---------------------------------- 234 (417)
T ss_pred ceecccCCCCCCEEEEEEcCCC--CcEEEEEECCCCCEEEeecCCC----------------------------------
Confidence 2467789999999999876554 478999999998543211 111
Q ss_pred eeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEE
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL 291 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~ 291 (789)
....++|+|||+.|+|+... ....+||+++++++..+++
T Consensus 235 ------------------------~~~~~~~spDg~~l~~~~~~----------------~~~~~i~~~d~~~~~~~~l- 273 (417)
T TIGR02800 235 ------------------------MNGAPAFSPDGSKLAVSLSK----------------DGNPDIYVMDLDGKQLTRL- 273 (417)
T ss_pred ------------------------CccceEECCCCCEEEEEECC----------------CCCccEEEEECCCCCEEEC-
Confidence 13568999999999998532 1235699999987654322
Q ss_pred EEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc-ceeEEEecCC
Q 003878 292 CWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIANDD 370 (789)
Q Consensus 292 ~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~dG 370 (789)
.... .....+.|+|||++|++.+.+.. ...||++++.+++ ...+..... ...+.|+|||
T Consensus 274 -~~~~---~~~~~~~~s~dg~~l~~~s~~~g--~~~iy~~d~~~~~--------------~~~l~~~~~~~~~~~~spdg 333 (417)
T TIGR02800 274 -TNGP---GIDTEPSWSPDGKSIAFTSDRGG--SPQIYMMDADGGE--------------VRRLTFRGGYNASPSWSPDG 333 (417)
T ss_pred -CCCC---CCCCCEEECCCCCEEEEEECCCC--CceEEEEECCCCC--------------EEEeecCCCCccCeEECCCC
Confidence 2211 11235789999999999876543 4579999988742 223332211 1235699999
Q ss_pred CEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECCCCceeeecccC
Q 003878 371 TVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE 449 (789)
Q Consensus 371 ~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~ 449 (789)
+.+++..... +.++|+.+|+.++. . .+++... ......++++ +.+++....++...+++.+.+ |+..+.++.+
T Consensus 334 ~~i~~~~~~~-~~~~i~~~d~~~~~-~-~~l~~~~--~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~ 407 (417)
T TIGR02800 334 DLIAFVHREG-GGFNIAVMDLDGGG-E-RVLTDTG--LDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLPLG 407 (417)
T ss_pred CEEEEEEccC-CceEEEEEeCCCCC-e-EEccCCC--CCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECCCC
Confidence 9998877653 67899999998865 3 4444332 2244566664 568888888888889988876 6655677766
Q ss_pred CeeEEEeec
Q 003878 450 IGSVNAISA 458 (789)
Q Consensus 450 ~~~v~~~s~ 458 (789)
.+.+..++|
T Consensus 408 ~g~~~~~~w 416 (417)
T TIGR02800 408 NGDVREPAW 416 (417)
T ss_pred CCCcCCCCC
Confidence 555544433
No 14
>PRK13604 luxD acyl transferase; Provisional
Probab=99.81 E-value=2e-18 Score=179.63 Aligned_cols=218 Identities=14% Similarity=0.084 Sum_probs=151.0
Q ss_pred EEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCC-CCCChhHHhcc
Q 003878 512 FVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGG-GEYGEEWHKGG 590 (789)
Q Consensus 512 ~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~-g~~g~~~~~~~ 590 (789)
.+.+.|| .+|.+|+..|++. ...+.|+||++||-.+. . .+...++.+|.++||.|+.+|.||+ |+.+..+.+..
T Consensus 13 ~~~~~dG-~~L~Gwl~~P~~~-~~~~~~~vIi~HGf~~~-~--~~~~~~A~~La~~G~~vLrfD~rg~~GeS~G~~~~~t 87 (307)
T PRK13604 13 VICLENG-QSIRVWETLPKEN-SPKKNNTILIASGFARR-M--DHFAGLAEYLSSNGFHVIRYDSLHHVGLSSGTIDEFT 87 (307)
T ss_pred eEEcCCC-CEEEEEEEcCccc-CCCCCCEEEEeCCCCCC-h--HHHHHHHHHHHHCCCEEEEecCCCCCCCCCCccccCc
Confidence 3567899 9999999999853 24678999999995442 2 2233456777779999999999886 76655553322
Q ss_pred cccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCc-----
Q 003878 591 ALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGH----- 665 (789)
Q Consensus 591 ~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~----- 665 (789)
.. ....|+.++++||.+++ .++|+++|+|+||.++..++.. + ..+++|+.+|+.++..+.......
T Consensus 88 ~s----~g~~Dl~aaid~lk~~~---~~~I~LiG~SmGgava~~~A~~-~-~v~~lI~~sp~~~l~d~l~~~~~~~~~~~ 158 (307)
T PRK13604 88 MS----IGKNSLLTVVDWLNTRG---INNLGLIAASLSARIAYEVINE-I-DLSFLITAVGVVNLRDTLERALGYDYLSL 158 (307)
T ss_pred cc----ccHHHHHHHHHHHHhcC---CCceEEEEECHHHHHHHHHhcC-C-CCCEEEEcCCcccHHHHHHHhhhcccccC
Confidence 11 12589999999998863 4689999999999998777764 3 389999999999976443210000
Q ss_pred cch--hh---c-CCCC-cHHHHHHHHhc------CcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHH
Q 003878 666 AWV--SD---F-GCSE-EEEEFYWLIKY------SPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATM 732 (789)
Q Consensus 666 ~~~--~e---~-g~p~-~~~~~~~l~~~------sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L 732 (789)
.+. .+ + |.+- ....+....++ +|...+++. ..|+|++||.+|+.||+.++.++++++
T Consensus 159 p~~~lp~~~d~~g~~l~~~~f~~~~~~~~~~~~~s~i~~~~~l----------~~PvLiIHG~~D~lVp~~~s~~l~e~~ 228 (307)
T PRK13604 159 PIDELPEDLDFEGHNLGSEVFVTDCFKHGWDTLDSTINKMKGL----------DIPFIAFTANNDSWVKQSEVIDLLDSI 228 (307)
T ss_pred cccccccccccccccccHHHHHHHHHhcCccccccHHHHHhhc----------CCCEEEEEcCCCCccCHHHHHHHHHHh
Confidence 000 00 1 1110 01112222222 344555554 579999999999999999999999987
Q ss_pred HHhhccCCCCCCCCCcEEEEEeCCCCcCCCCch
Q 003878 733 QYVLCTSLENSPQTNPIIGRIERKAGHGVGLPT 765 (789)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~ 765 (789)
+. .+.+++++++++|.+....
T Consensus 229 ~s------------~~kkl~~i~Ga~H~l~~~~ 249 (307)
T PRK13604 229 RS------------EQCKLYSLIGSSHDLGENL 249 (307)
T ss_pred cc------------CCcEEEEeCCCccccCcch
Confidence 53 3578999999999987643
No 15
>PRK10162 acetyl esterase; Provisional
Probab=99.80 E-value=1.5e-17 Score=179.22 Aligned_cols=238 Identities=15% Similarity=0.104 Sum_probs=163.2
Q ss_pred CcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCC-CCCHHHHHHHHcCCeEEEEEeecCCCCCCh
Q 003878 506 FHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTP-SFSVSRTILMRHLGAVFCIANIRGGGEYGE 584 (789)
Q Consensus 506 ~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~-~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~ 584 (789)
...+.+.+++.+| .|++.+|+|+. ...|+|||+|||.....+. .+......+....|+.|+.+|||.+.+.
T Consensus 55 ~~~~~~~i~~~~g--~i~~~~y~P~~----~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlape~-- 126 (318)
T PRK10162 55 MATRAYMVPTPYG--QVETRLYYPQP----DSQATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPEA-- 126 (318)
T ss_pred ceEEEEEEecCCC--ceEEEEECCCC----CCCCEEEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCCCC--
Confidence 3467788888888 49999999964 2469999999987554443 3333333444446999999999987652
Q ss_pred hHHhcccccCCcchHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHhC------CCceeEEEecCCcccc
Q 003878 585 EWHKGGALAKKQNCFDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQR------PDLFGCALAHVGVMDM 655 (789)
Q Consensus 585 ~~~~~~~~~~~~~~~~D~~~~~~~L~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~------pd~f~a~v~~~p~~d~ 655 (789)
.....++|+.++++|+.++ --+|++||+|+|+|+||.+++.++.+. +..++++|+.+|++|+
T Consensus 127 ---------~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~~~ 197 (318)
T PRK10162 127 ---------RFPQAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLYGL 197 (318)
T ss_pred ---------CCCCcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhheEEECCccCC
Confidence 1234689999999999764 236899999999999999999888653 3578999999999886
Q ss_pred cccccccCCccchhhcCCC---CcHHHHHHH-H--------hcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcH
Q 003878 656 LRYHKFTIGHAWVSDFGCS---EEEEEFYWL-I--------KYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPL 723 (789)
Q Consensus 656 ~~~~~~~~~~~~~~e~g~p---~~~~~~~~l-~--------~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~ 723 (789)
..... + ..++.. -..+..+++ . ..+|+...... +-....||++|++|+.|+.+.
T Consensus 198 ~~~~s------~-~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~p~~~p~~~-----~l~~~lPp~~i~~g~~D~L~d-- 263 (318)
T PRK10162 198 RDSVS------R-RLLGGVWDGLTQQDLQMYEEAYLSNDADRESPYYCLFNN-----DLTRDVPPCFIAGAEFDPLLD-- 263 (318)
T ss_pred CCChh------H-HHhCCCccccCHHHHHHHHHHhCCCccccCCcccCcchh-----hhhcCCCCeEEEecCCCcCcC--
Confidence 32110 0 111110 011111111 1 11233221000 000136999999999999864
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCc---hhhHHHHHHHHHHHHHHHhC
Q 003878 724 HSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLP---TQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 724 ~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~---~~~~~~~~~~~~~fl~~~l~ 784 (789)
++..|.++|+++ |.+++++++++..|++... ..+..+.+..+.+||.++++
T Consensus 264 e~~~~~~~L~~a----------Gv~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~~~ 317 (318)
T PRK10162 264 DSRLLYQTLAAH----------QQPCEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTAQLK 317 (318)
T ss_pred hHHHHHHHHHHc----------CCCEEEEEECCCceehhhccCchHHHHHHHHHHHHHHHHHhc
Confidence 899999999998 9999999999999997532 23345667788899988875
No 16
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=99.77 E-value=3.6e-18 Score=182.16 Aligned_cols=243 Identities=20% Similarity=0.227 Sum_probs=160.5
Q ss_pred CCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCC
Q 003878 504 SEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYG 583 (789)
Q Consensus 504 ~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g 583 (789)
..+.+..+.|.+.+| .+|.++++.|++. .++.|+||.+||..+....+ .....+.. +|++|+.+|.||-|+..
T Consensus 52 ~~~~vy~v~f~s~~g-~~V~g~l~~P~~~--~~~~Pavv~~hGyg~~~~~~---~~~~~~a~-~G~~vl~~d~rGqg~~~ 124 (320)
T PF05448_consen 52 PGVEVYDVSFESFDG-SRVYGWLYRPKNA--KGKLPAVVQFHGYGGRSGDP---FDLLPWAA-AGYAVLAMDVRGQGGRS 124 (320)
T ss_dssp SSEEEEEEEEEEGGG-EEEEEEEEEES-S--SSSEEEEEEE--TT--GGGH---HHHHHHHH-TT-EEEEE--TTTSSSS
T ss_pred CCEEEEEEEEEccCC-CEEEEEEEecCCC--CCCcCEEEEecCCCCCCCCc---cccccccc-CCeEEEEecCCCCCCCC
Confidence 356778999999999 9999999999953 48999999999965542221 12234555 99999999999988543
Q ss_pred hhHHh-----------cccccCC-----cchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEE
Q 003878 584 EEWHK-----------GGALAKK-----QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCAL 647 (789)
Q Consensus 584 ~~~~~-----------~~~~~~~-----~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v 647 (789)
++... .+..... .+.+.|.+.++++|.++..+|++||+++|.|.||.++++++...| ++++++
T Consensus 125 ~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~-rv~~~~ 203 (320)
T PF05448_consen 125 PDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDP-RVKAAA 203 (320)
T ss_dssp -B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSS-T-SEEE
T ss_pred CCccccCCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCc-cccEEE
Confidence 33211 1111101 134689999999999999999999999999999999999999975 699999
Q ss_pred ecCCcc-cccccccccC-Cccc---h--hhcCCC---CcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCC
Q 003878 648 AHVGVM-DMLRYHKFTI-GHAW---V--SDFGCS---EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHD 717 (789)
Q Consensus 648 ~~~p~~-d~~~~~~~~~-~~~~---~--~e~g~p---~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D 717 (789)
+.+|++ |+.+...... ...| . -.+.++ ..++.++.|.-++....++.+ .+|+|+..|..|
T Consensus 204 ~~vP~l~d~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~v~~~L~Y~D~~nfA~ri----------~~pvl~~~gl~D 273 (320)
T PF05448_consen 204 ADVPFLCDFRRALELRADEGPYPEIRRYFRWRDPHHEREPEVFETLSYFDAVNFARRI----------KCPVLFSVGLQD 273 (320)
T ss_dssp EESESSSSHHHHHHHT--STTTHHHHHHHHHHSCTHCHHHHHHHHHHTT-HHHHGGG------------SEEEEEEETT-
T ss_pred ecCCCccchhhhhhcCCccccHHHHHHHHhccCCCcccHHHHHHHHhhhhHHHHHHHc----------CCCEEEEEecCC
Confidence 999954 4443332221 1111 0 112222 344566777777777777776 799999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHH
Q 003878 718 DRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKM 782 (789)
Q Consensus 718 ~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 782 (789)
..|||.-....+++|. .+.++.+||..||..... ......+.||.++
T Consensus 274 ~~cPP~t~fA~yN~i~-------------~~K~l~vyp~~~He~~~~-----~~~~~~~~~l~~~ 320 (320)
T PF05448_consen 274 PVCPPSTQFAAYNAIP-------------GPKELVVYPEYGHEYGPE-----FQEDKQLNFLKEH 320 (320)
T ss_dssp SSS-HHHHHHHHCC---------------SSEEEEEETT--SSTTHH-----HHHHHHHHHHHH-
T ss_pred CCCCchhHHHHHhccC-------------CCeeEEeccCcCCCchhh-----HHHHHHHHHHhcC
Confidence 9999998888887774 357999999999987532 2234677888764
No 17
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=99.77 E-value=2.6e-17 Score=183.04 Aligned_cols=237 Identities=14% Similarity=0.040 Sum_probs=156.7
Q ss_pred CCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCCh
Q 003878 505 EFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGE 584 (789)
Q Consensus 505 ~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~ 584 (789)
.+..+.+.++..|| .+|+++++.|+. +++.|+||+.|| .+......|.. ....|.++||+|+++|+||.|+...
T Consensus 165 ~~~~e~v~i~~~~g-~~l~g~l~~P~~---~~~~P~Vli~gG-~~~~~~~~~~~-~~~~La~~Gy~vl~~D~pG~G~s~~ 238 (414)
T PRK05077 165 PGELKELEFPIPGG-GPITGFLHLPKG---DGPFPTVLVCGG-LDSLQTDYYRL-FRDYLAPRGIAMLTIDMPSVGFSSK 238 (414)
T ss_pred CCceEEEEEEcCCC-cEEEEEEEECCC---CCCccEEEEeCC-cccchhhhHHH-HHHHHHhCCCEEEEECCCCCCCCCC
Confidence 34578999999999 899999999984 467898886555 44332233333 3445556999999999999775421
Q ss_pred hHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccc--c-
Q 003878 585 EWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK--F- 661 (789)
Q Consensus 585 ~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~--~- 661 (789)
+. ..........+++++|.....+|++||+++|+|+||++++.++..+|++++++|+..|+++...... .
T Consensus 239 -~~------~~~d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~~~~~~~~~~~ 311 (414)
T PRK05077 239 -WK------LTQDSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVHTLLTDPKRQQ 311 (414)
T ss_pred -CC------ccccHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccchhhcchhhhh
Confidence 10 0111122335788999999899999999999999999999999998999999999998875221110 0
Q ss_pred cCCc----cchhhcCCC-CcH-HHHHHHHhcCccc--CC-CCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHH
Q 003878 662 TIGH----AWVSDFGCS-EEE-EEFYWLIKYSPLH--NV-RRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATM 732 (789)
Q Consensus 662 ~~~~----~~~~e~g~p-~~~-~~~~~l~~~sP~~--~v-~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L 732 (789)
.... .+....|.+ .+. .....+..++.-. .+ .+ ...|+|+++|++|.+||++++..+.+..
T Consensus 312 ~~p~~~~~~la~~lg~~~~~~~~l~~~l~~~sl~~~~~l~~~----------i~~PvLiI~G~~D~ivP~~~a~~l~~~~ 381 (414)
T PRK05077 312 QVPEMYLDVLASRLGMHDASDEALRVELNRYSLKVQGLLGRR----------CPTPMLSGYWKNDPFSPEEDSRLIASSS 381 (414)
T ss_pred hchHHHHHHHHHHhCCCCCChHHHHHHhhhccchhhhhhccC----------CCCcEEEEecCCCCCCCHHHHHHHHHhC
Confidence 0000 011223433 222 2233344443211 11 22 3679999999999999999998776544
Q ss_pred HHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHh
Q 003878 733 QYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKML 783 (789)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 783 (789)
. ..++.++++. |... ...+.+..+.+||.++|
T Consensus 382 ~--------------~~~l~~i~~~-~~~e----~~~~~~~~i~~wL~~~l 413 (414)
T PRK05077 382 A--------------DGKLLEIPFK-PVYR----NFDKALQEISDWLEDRL 413 (414)
T ss_pred C--------------CCeEEEccCC-CccC----CHHHHHHHHHHHHHHHh
Confidence 3 2367778876 3332 12466778899998876
No 18
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.77 E-value=6.2e-17 Score=176.15 Aligned_cols=255 Identities=12% Similarity=0.065 Sum_probs=164.3
Q ss_pred CCCCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCC
Q 003878 502 DRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGE 581 (789)
Q Consensus 502 ~~~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~ 581 (789)
.+..+..+...+++.|| .+|.+..+.|.+. ..+.|+||++||.... ....+.. ....|.++||.|+.+|+||.|.
T Consensus 26 ~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~--~~~~~~VvllHG~~~~-~~~~~~~-~~~~L~~~Gy~V~~~D~rGhG~ 100 (330)
T PLN02298 26 ALKGIKGSKSFFTSPRG-LSLFTRSWLPSSS--SPPRALIFMVHGYGND-ISWTFQS-TAIFLAQMGFACFALDLEGHGR 100 (330)
T ss_pred hccCCccccceEEcCCC-CEEEEEEEecCCC--CCCceEEEEEcCCCCC-cceehhH-HHHHHHhCCCEEEEecCCCCCC
Confidence 44455566677888999 9999988877642 2356899999997433 2333332 2334555899999999999886
Q ss_pred CChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccc
Q 003878 582 YGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKF 661 (789)
Q Consensus 582 ~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~ 661 (789)
.... .+....-....+|+.+++++|......+..+++++|+|+||.+++.++.++|++++++|+.+|+..+......
T Consensus 101 S~~~---~~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~ 177 (330)
T PLN02298 101 SEGL---RAYVPNVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLVAPMCKISDKIRP 177 (330)
T ss_pred CCCc---cccCCCHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEecccccCCcccCC
Confidence 4321 1111111234688999999998754334457999999999999999999999999999999987654321100
Q ss_pred c--------CCccchhhc-CCC---------CcHHHHHHHHhcCcc----------------------cCCCCCCCCCCC
Q 003878 662 T--------IGHAWVSDF-GCS---------EEEEEFYWLIKYSPL----------------------HNVRRPWEQNPD 701 (789)
Q Consensus 662 ~--------~~~~~~~e~-g~p---------~~~~~~~~l~~~sP~----------------------~~v~~~~~~~~~ 701 (789)
. ....+.... ..+ ..+ ....+...+|. ..+.++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i------ 250 (330)
T PLN02298 178 PWPIPQILTFVARFLPTLAIVPTADLLEKSVKVP-AKKIIAKRNPMRYNGKPRLGTVVELLRVTDYLGKKLKDV------ 250 (330)
T ss_pred chHHHHHHHHHHHHCCCCccccCCCcccccccCH-HHHHHHHhCccccCCCccHHHHHHHHHHHHHHHHhhhhc------
Confidence 0 000000000 000 000 01111122222 112222
Q ss_pred CCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCC--chhhHHHHHHHHHHHH
Q 003878 702 KPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGL--PTQKMIDEAADRYGFM 779 (789)
Q Consensus 702 ~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~--~~~~~~~~~~~~~~fl 779 (789)
..|+||+||.+|..||+.++.++++++.. ...++.+++++||.... +..........+.+||
T Consensus 251 ----~~PvLii~G~~D~ivp~~~~~~l~~~i~~------------~~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl 314 (330)
T PLN02298 251 ----SIPFIVLHGSADVVTDPDVSRALYEEAKS------------EDKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWL 314 (330)
T ss_pred ----CCCEEEEecCCCCCCCHHHHHHHHHHhcc------------CCceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHH
Confidence 68999999999999999999999887753 23578899999998653 2222234567889999
Q ss_pred HHHhCCCC
Q 003878 780 AKMLGASW 787 (789)
Q Consensus 780 ~~~l~~~~ 787 (789)
.++++...
T Consensus 315 ~~~~~~~~ 322 (330)
T PLN02298 315 NERCTGKA 322 (330)
T ss_pred HHhccCCC
Confidence 99987653
No 19
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=4e-16 Score=174.61 Aligned_cols=269 Identities=13% Similarity=0.040 Sum_probs=173.2
Q ss_pred CCEEEEEEEcCCCC----eeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEE--EEEecCCceEEEEEEE
Q 003878 90 GNKYFYFHNTGLQP----QSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLA--YALSYSGSDWATIKLM 163 (789)
Q Consensus 90 g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la--~~~~~~g~~~~~i~v~ 163 (789)
+.++.|........ ...||+.+..+++.+.|+..+.. ..++.|||||+.++ |.....| ..+||++
T Consensus 146 ~~~iayv~~~~~~~~~~~~~~l~~~d~dG~~~~~lt~~~~~-------~~sP~wSPDG~~~~~~y~S~~~g--~~~I~~~ 216 (428)
T PRK01029 146 SGKIIFSLSTTNSDTELKQGELWSVDYDGQNLRPLTQEHSL-------SITPTWMHIGSGFPYLYVSYKLG--VPKIFLG 216 (428)
T ss_pred cCEEEEEEeeCCcccccccceEEEEcCCCCCceEcccCCCC-------cccceEccCCCceEEEEEEccCC--CceEEEE
Confidence 78999998765422 46799998766666666654322 35789999999854 4555454 5799999
Q ss_pred EcCCCceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEE
Q 003878 164 RIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWT 243 (789)
Q Consensus 164 dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~ws 243 (789)
|+.+|+... +....+ ....++||
T Consensus 217 ~l~~g~~~~--lt~~~g-------------------------------------------------------~~~~p~wS 239 (428)
T PRK01029 217 SLENPAGKK--ILALQG-------------------------------------------------------NQLMPTFS 239 (428)
T ss_pred ECCCCCceE--eecCCC-------------------------------------------------------CccceEEC
Confidence 999986543 222200 13579999
Q ss_pred eCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEE--ECCCCC-CCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEc
Q 003878 244 HDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYH--FLGTKQ-SEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEE 320 (789)
Q Consensus 244 pDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~lg~~~-~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~ 320 (789)
|||+.|+|+.... ....+|.+ ++.++. .+...+..... .....+.|||||++|++.+.+
T Consensus 240 PDG~~Laf~s~~~----------------g~~di~~~~~~~~~g~~g~~~~lt~~~~--~~~~~p~wSPDG~~Laf~s~~ 301 (428)
T PRK01029 240 PRKKLLAFISDRY----------------GNPDLFIQSFSLETGAIGKPRRLLNEAF--GTQGNPSFSPDGTRLVFVSNK 301 (428)
T ss_pred CCCCEEEEEECCC----------------CCcceeEEEeecccCCCCcceEeecCCC--CCcCCeEECCCCCEEEEEECC
Confidence 9999999986432 12235554 343321 22233433221 112357999999999998754
Q ss_pred CCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc-cceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEE
Q 003878 321 NCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF-DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFE 399 (789)
Q Consensus 321 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~ 399 (789)
.. ..+||++++.... .....++... ....+.|||||+.|++.+..+ +..+|+++|+++++ .+.
T Consensus 302 ~g--~~~ly~~~~~~~g------------~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~-g~~~I~v~dl~~g~-~~~ 365 (428)
T PRK01029 302 DG--RPRIYIMQIDPEG------------QSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK-GVRQICVYDLATGR-DYQ 365 (428)
T ss_pred CC--CceEEEEECcccc------------cceEEeccCCCCccceeECCCCCEEEEEEcCC-CCcEEEEEECCCCC-eEE
Confidence 33 4679999886421 0122233221 112356999999999988764 45799999999887 555
Q ss_pred eccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccC
Q 003878 400 VIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARRE 461 (789)
Q Consensus 400 l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d 461 (789)
++... .....+.|+++ +.|++....++...|+++++++++. +.|+...+.+..++|+|-
T Consensus 366 Lt~~~--~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~-~~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 366 LTTSP--ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT-RKIVIGSGEKRFPSWGAF 425 (428)
T ss_pred ccCCC--CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCcccCceecCC
Confidence 55332 34567888875 4566666666778999999986665 666655555555666653
No 20
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=4.6e-16 Score=175.45 Aligned_cols=260 Identities=19% Similarity=0.135 Sum_probs=172.5
Q ss_pred EEEEEEEcC-CCCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCce
Q 003878 92 KYFYFHNTG-LQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIV 170 (789)
Q Consensus 92 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~ 170 (789)
++.|..... ......||+.+..+...++|+..+. .+..+.|||||++|||+....| ..+||++|+.+|+.
T Consensus 184 riayv~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~-------~~~~p~wSPDG~~La~~s~~~g--~~~L~~~dl~tg~~ 254 (448)
T PRK04792 184 RIAYVVVNDKDKYPYQLMIADYDGYNEQMLLRSPE-------PLMSPAWSPDGRKLAYVSFENR--KAEIFVQDIYTQVR 254 (448)
T ss_pred EEEEEEeeCCCCCceEEEEEeCCCCCceEeecCCC-------cccCceECCCCCEEEEEEecCC--CcEEEEEECCCCCe
Confidence 455554433 3334568887754555677766542 3567899999999999887554 57899999999865
Q ss_pred ecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEE
Q 003878 171 EADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFF 250 (789)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~ 250 (789)
.. +....+ ....++|||||+.|+
T Consensus 255 ~~--lt~~~g-------------------------------------------------------~~~~~~wSPDG~~La 277 (448)
T PRK04792 255 EK--VTSFPG-------------------------------------------------------INGAPRFSPDGKKLA 277 (448)
T ss_pred EE--ecCCCC-------------------------------------------------------CcCCeeECCCCCEEE
Confidence 43 221100 135789999999999
Q ss_pred EEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEE
Q 003878 251 YSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYY 330 (789)
Q Consensus 251 y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~ 330 (789)
|+.... ...+||++++.++..+ .+... ......+.|||||++|++.+.+.. ..+||+
T Consensus 278 ~~~~~~----------------g~~~Iy~~dl~tg~~~--~lt~~---~~~~~~p~wSpDG~~I~f~s~~~g--~~~Iy~ 334 (448)
T PRK04792 278 LVLSKD----------------GQPEIYVVDIATKALT--RITRH---RAIDTEPSWHPDGKSLIFTSERGG--KPQIYR 334 (448)
T ss_pred EEEeCC----------------CCeEEEEEECCCCCeE--ECccC---CCCccceEECCCCCEEEEEECCCC--CceEEE
Confidence 975421 2357999999876432 22222 112346889999999999875443 468999
Q ss_pred EECCCCCCCcccccccCCCCccEeeec-cccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCcee
Q 003878 331 CDLSALPEGLEGFKKRDGLLPFVKLID-GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVL 409 (789)
Q Consensus 331 ~d~~~g~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i 409 (789)
+|++++. ...++. +.....+.|+|||+.|++.+..+ +.++|+++|+++++ .+.+.... ..
T Consensus 335 ~dl~~g~--------------~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~-g~~~I~~~dl~~g~-~~~lt~~~---~d 395 (448)
T PRK04792 335 VNLASGK--------------VSRLTFEGEQNLGGSITPDGRSMIMVNRTN-GKFNIARQDLETGA-MQVLTSTR---LD 395 (448)
T ss_pred EECCCCC--------------EEEEecCCCCCcCeeECCCCCEEEEEEecC-CceEEEEEECCCCC-eEEccCCC---CC
Confidence 9998752 223332 21112256999999999987653 56899999998886 45554332 12
Q ss_pred eeEEEecC-CEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeeccc
Q 003878 410 ESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARR 460 (789)
Q Consensus 410 ~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~ 460 (789)
....|+++ +.+++....++...|++++.+ |+..+.++.+.+.+..++|+|
T Consensus 396 ~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 396 ESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence 34467764 567777777888889999986 665567766655555566654
No 21
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=99.74 E-value=3e-17 Score=166.60 Aligned_cols=194 Identities=13% Similarity=0.101 Sum_probs=131.3
Q ss_pred EEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChh--HHhcccccCCcchHHH
Q 003878 524 MFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEE--WHKGGALAKKQNCFDD 601 (789)
Q Consensus 524 ~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~--~~~~~~~~~~~~~~~D 601 (789)
++++.|++. +++.|+||++||+.+..........+..++++.|++|+++|+||++..+.. |..............|
T Consensus 1 ~~ly~P~~~--~~~~P~vv~lHG~~~~~~~~~~~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (212)
T TIGR01840 1 MYVYVPAGL--TGPRALVLALHGCGQTASAYVIDWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTGEVES 78 (212)
T ss_pred CEEEcCCCC--CCCCCEEEEeCCCCCCHHHHhhhcChHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCCccHHH
Confidence 478889874 468899999999876543322111245666668999999999997754443 3332222223345788
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHHH
Q 003878 602 FISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFY 681 (789)
Q Consensus 602 ~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~ 681 (789)
+...++++.++..+|++||+|+|+|+||.+++.++.++|++|+++++.++..-...... .... .....+.....+.
T Consensus 79 ~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~~~~~~~---~~~~-~~~~~~~~~~~~~ 154 (212)
T TIGR01840 79 LHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPYGEASSS---ISAT-PQMCTAATAASVC 154 (212)
T ss_pred HHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCcccccccc---hhhH-hhcCCCCCHHHHH
Confidence 88999999988778999999999999999999999999999999988876542111000 0000 1111122222222
Q ss_pred HH-HhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHh
Q 003878 682 WL-IKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYV 735 (789)
Q Consensus 682 ~l-~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~ 735 (789)
.+ .... ..... ..||++|+||.+|..||+..+.+++++|++.
T Consensus 155 ~~~~~~~--~~~~~----------~~p~~~i~hG~~D~vVp~~~~~~~~~~l~~~ 197 (212)
T TIGR01840 155 RLVRGMQ--SEYNG----------PTPIMSVVHGDADYTVLPGNADEIRDAMLKV 197 (212)
T ss_pred HHHhccC--CcccC----------CCCeEEEEEcCCCceeCcchHHHHHHHHHHh
Confidence 22 2211 11112 3678899999999999999999999999986
No 22
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=1.4e-15 Score=171.62 Aligned_cols=237 Identities=13% Similarity=0.103 Sum_probs=166.9
Q ss_pred cccceeeEEEeeecccc----ceeeeeeec------cc-----ccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCC
Q 003878 208 LRGIFFFFYLFSLVKST----IYSFWSVVS------QF-----KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSN 272 (789)
Q Consensus 208 ~~~~~~~~~~~~s~~~g----~~~l~~~~~------~~-----~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~ 272 (789)
.+|+|..+++|+++..| ..+||.++. ++ ...+++|||||+.|+|.....
T Consensus 160 ~~g~f~~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~---------------- 223 (435)
T PRK05137 160 EKGYFDTRIVYVAESGPKNKRIKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYAN---------------- 223 (435)
T ss_pred CCCcCCCeEEEEEeeCCCCCcceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecC----------------
Confidence 47899999999999888 779999876 11 235799999999999987532
Q ss_pred cccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCcc
Q 003878 273 LYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPF 352 (789)
Q Consensus 273 ~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~ 352 (789)
...+||++++.++..+ .+...+ .....+.|||||+.|++...... ..+||++|++++. .
T Consensus 224 g~~~i~~~dl~~g~~~--~l~~~~---g~~~~~~~SPDG~~la~~~~~~g--~~~Iy~~d~~~~~--------------~ 282 (435)
T PRK05137 224 GRPRVYLLDLETGQRE--LVGNFP---GMTFAPRFSPDGRKVVMSLSQGG--NTDIYTMDLRSGT--------------T 282 (435)
T ss_pred CCCEEEEEECCCCcEE--EeecCC---CcccCcEECCCCCEEEEEEecCC--CceEEEEECCCCc--------------e
Confidence 2357999999776432 232222 12346899999999998875443 5789999998752 2
Q ss_pred Eeeecccc-ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeE
Q 003878 353 VKLIDGFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKY 430 (789)
Q Consensus 353 ~~l~~~~~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~ 430 (789)
..++.... ...+.|+|||+.|+|.++++ +..+|+++|+++++ .+.++... .....+.|+++ +.+++.....+..
T Consensus 283 ~~Lt~~~~~~~~~~~spDG~~i~f~s~~~-g~~~Iy~~d~~g~~-~~~lt~~~--~~~~~~~~SpdG~~ia~~~~~~~~~ 358 (435)
T PRK05137 283 TRLTDSPAIDTSPSYSPDGSQIVFESDRS-GSPQLYVMNADGSN-PRRISFGG--GRYSTPVWSPRGDLIAFTKQGGGQF 358 (435)
T ss_pred EEccCCCCccCceeEcCCCCEEEEEECCC-CCCeEEEEECCCCC-eEEeecCC--CcccCeEECCCCCEEEEEEcCCCce
Confidence 33333221 12356999999999998765 35789999998776 56665432 23445678875 4566655555667
Q ss_pred EEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCC--cEEEEEECCCCC
Q 003878 431 VLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIP--GIVYQCNLKTET 487 (789)
Q Consensus 431 ~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P--~~ly~~dl~tg~ 487 (789)
+|++++++++.. +.++.. ..+..++++||++.++|+....... ..+|.+|+++++
T Consensus 359 ~i~~~d~~~~~~-~~lt~~-~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 359 SIGVMKPDGSGE-RILTSG-FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred EEEEEECCCCce-EeccCC-CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 899999975543 555543 2355678999999999877654443 589999998774
No 23
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.74 E-value=6.5e-17 Score=159.25 Aligned_cols=232 Identities=19% Similarity=0.179 Sum_probs=164.0
Q ss_pred CCCCCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCC
Q 003878 501 FDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGG 580 (789)
Q Consensus 501 ~~~~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g 580 (789)
+.....++-.++|++.+| .+|.+|++.|+.- .++.|+||..||-.+....+. .++.|.. .||+|+..|.||.|
T Consensus 49 ~~~~~ve~ydvTf~g~~g-~rI~gwlvlP~~~--~~~~P~vV~fhGY~g~~g~~~---~~l~wa~-~Gyavf~MdvRGQg 121 (321)
T COG3458 49 FTLPRVEVYDVTFTGYGG-ARIKGWLVLPRHE--KGKLPAVVQFHGYGGRGGEWH---DMLHWAV-AGYAVFVMDVRGQG 121 (321)
T ss_pred ccCCceEEEEEEEeccCC-ceEEEEEEeeccc--CCccceEEEEeeccCCCCCcc---ccccccc-cceeEEEEecccCC
Confidence 333455678899999999 9999999999973 389999999999555433221 2344555 89999999999977
Q ss_pred CCCh------------hHHhcccccCC-----cchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCce
Q 003878 581 EYGE------------EWHKGGALAKK-----QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLF 643 (789)
Q Consensus 581 ~~g~------------~~~~~~~~~~~-----~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f 643 (789)
..-. .|...|..+.+ ...|.|...+++.|.+...+|++||++.|+|.||.|+++++...| ++
T Consensus 122 ~~~~dt~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~~-ri 200 (321)
T COG3458 122 SSSQDTADPPGGPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALDP-RI 200 (321)
T ss_pred CccccCCCCCCCCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhhhhhcCh-hh
Confidence 6522 12222222322 356899999999999999999999999999999999999999965 89
Q ss_pred eEEEecCCcccc-cccccccCCccchhh------cCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCC
Q 003878 644 GCALAHVGVMDM-LRYHKFTIGHAWVSD------FGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADH 716 (789)
Q Consensus 644 ~a~v~~~p~~d~-~~~~~~~~~~~~~~e------~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~ 716 (789)
+++++.+|++.- .+.........+ .| .-.|...+.++.|.-++-.+.+.++ +.|+|+..|..
T Consensus 201 k~~~~~~Pfl~df~r~i~~~~~~~y-dei~~y~k~h~~~e~~v~~TL~yfD~~n~A~Ri----------K~pvL~svgL~ 269 (321)
T COG3458 201 KAVVADYPFLSDFPRAIELATEGPY-DEIQTYFKRHDPKEAEVFETLSYFDIVNLAARI----------KVPVLMSVGLM 269 (321)
T ss_pred hcccccccccccchhheeecccCcH-HHHHHHHHhcCchHHHHHHHHhhhhhhhHHHhh----------ccceEEeeccc
Confidence 999999998753 222221111111 11 1223334445544444433344444 78999999999
Q ss_pred CCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCc
Q 003878 717 DDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLP 764 (789)
Q Consensus 717 D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~ 764 (789)
|+.|||......+++|.. +.++.+|+.-+|.....
T Consensus 270 D~vcpPstqFA~yN~l~~-------------~K~i~iy~~~aHe~~p~ 304 (321)
T COG3458 270 DPVCPPSTQFAAYNALTT-------------SKTIEIYPYFAHEGGPG 304 (321)
T ss_pred CCCCCChhhHHHhhcccC-------------CceEEEeeccccccCcc
Confidence 999999998888887753 23566777777976543
No 24
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=1.9e-15 Score=169.69 Aligned_cols=261 Identities=16% Similarity=0.102 Sum_probs=172.9
Q ss_pred CEEEEEEEcCC-CCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCc
Q 003878 91 NKYFYFHNTGL-QPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI 169 (789)
Q Consensus 91 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~ 169 (789)
.++.|.....+ ...+.||+.+..+++.+.|+..+. .+..++|||||++|||+....| ..+|+++|+.+|+
T Consensus 164 ~riayv~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~-------~~~~p~wSPDG~~la~~s~~~g--~~~i~i~dl~~G~ 234 (429)
T PRK03629 164 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQ-------PLMSPAWSPDGSKLAYVTFESG--RSALVIQTLANGA 234 (429)
T ss_pred CeEEEEEeeCCCCcceeEEEEcCCCCCCEEeecCCC-------ceeeeEEcCCCCEEEEEEecCC--CcEEEEEECCCCC
Confidence 56777776433 335679998865555666665432 3678999999999999876444 4689999999986
Q ss_pred eecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEE
Q 003878 170 VEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGF 249 (789)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i 249 (789)
... +.... . ....++|||||+.|
T Consensus 235 ~~~--l~~~~---------------------~----------------------------------~~~~~~~SPDG~~L 257 (429)
T PRK03629 235 VRQ--VASFP---------------------R----------------------------------HNGAPAFSPDGSKL 257 (429)
T ss_pred eEE--ccCCC---------------------C----------------------------------CcCCeEECCCCCEE
Confidence 433 11110 0 13679999999999
Q ss_pred EEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEE
Q 003878 250 FYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVY 329 (789)
Q Consensus 250 ~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~ 329 (789)
+|+.... ...+||++++.++... .+.... .....+.|||||++|++.+.+.. ..+||
T Consensus 258 a~~~~~~----------------g~~~I~~~d~~tg~~~--~lt~~~---~~~~~~~wSPDG~~I~f~s~~~g--~~~Iy 314 (429)
T PRK03629 258 AFALSKT----------------GSLNLYVMDLASGQIR--QVTDGR---SNNTEPTWFPDSQNLAYTSDQAG--RPQVY 314 (429)
T ss_pred EEEEcCC----------------CCcEEEEEECCCCCEE--EccCCC---CCcCceEECCCCCEEEEEeCCCC--CceEE
Confidence 9985321 2246999998765332 232222 22347899999999999876443 46899
Q ss_pred EEECCCCCCCcccccccCCCCccEeeeccc-cceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCce
Q 003878 330 YCDLSALPEGLEGFKKRDGLLPFVKLIDGF-DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDV 408 (789)
Q Consensus 330 ~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~ 408 (789)
+++++++. ...++... ....+.|+|||+.|++.+..+ ....|+.+|+++++ .+.+.... .
T Consensus 315 ~~d~~~g~--------------~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~-g~~~I~~~dl~~g~-~~~Lt~~~---~ 375 (429)
T PRK03629 315 KVNINGGA--------------PQRITWEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGG-VQVLTDTF---L 375 (429)
T ss_pred EEECCCCC--------------eEEeecCCCCccCEEECCCCCEEEEEEccC-CCceEEEEECCCCC-eEEeCCCC---C
Confidence 99998752 12232211 112356999999999887764 35789999998876 55555322 2
Q ss_pred eeeEEEecCCE-EEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeeccc
Q 003878 409 LESATAVNLNQ-MIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARR 460 (789)
Q Consensus 409 i~~v~~~~~~~-lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~ 460 (789)
.....|++|+. +++...+.+...|++++++ |+..+.|+...+.+..++|+|
T Consensus 376 ~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 376 DETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccCCCCcCCcccCC
Confidence 34677888654 5555555556789999997 655467765455565566654
No 25
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=1.8e-15 Score=170.80 Aligned_cols=260 Identities=13% Similarity=0.097 Sum_probs=170.4
Q ss_pred CEEEEEEEcCCCC--eeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCC
Q 003878 91 NKYFYFHNTGLQP--QSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQ 168 (789)
Q Consensus 91 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg 168 (789)
.+++|..+.++.. ...||+.+..+...+.|...+. .+..++|||||++|||+....| ..+|+++|+.+|
T Consensus 166 ~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~-------~v~~p~wSpDG~~lay~s~~~g--~~~i~~~dl~~g 236 (435)
T PRK05137 166 TRIVYVAESGPKNKRIKRLAIMDQDGANVRYLTDGSS-------LVLTPRFSPNRQEITYMSYANG--RPRVYLLDLETG 236 (435)
T ss_pred CeEEEEEeeCCCCCcceEEEEECCCCCCcEEEecCCC-------CeEeeEECCCCCEEEEEEecCC--CCEEEEEECCCC
Confidence 4778877655422 4578988765455566665432 3678999999999999886555 379999999998
Q ss_pred ceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcE
Q 003878 169 IVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKG 248 (789)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~ 248 (789)
+... +....+ ....++|||||+.
T Consensus 237 ~~~~--l~~~~g-------------------------------------------------------~~~~~~~SPDG~~ 259 (435)
T PRK05137 237 QREL--VGNFPG-------------------------------------------------------MTFAPRFSPDGRK 259 (435)
T ss_pred cEEE--eecCCC-------------------------------------------------------cccCcEECCCCCE
Confidence 6542 222100 1367899999999
Q ss_pred EEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEE
Q 003878 249 FFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKV 328 (789)
Q Consensus 249 i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i 328 (789)
|+|+.... ...+||++++.++... .+... +.....+.|||||++|+|.+.+.. ..+|
T Consensus 260 la~~~~~~----------------g~~~Iy~~d~~~~~~~--~Lt~~---~~~~~~~~~spDG~~i~f~s~~~g--~~~I 316 (435)
T PRK05137 260 VVMSLSQG----------------GNTDIYTMDLRSGTTT--RLTDS---PAIDTSPSYSPDGSQIVFESDRSG--SPQL 316 (435)
T ss_pred EEEEEecC----------------CCceEEEEECCCCceE--EccCC---CCccCceeEcCCCCEEEEEECCCC--CCeE
Confidence 99985422 2356999998765432 23222 222346899999999999875433 4689
Q ss_pred EEEECCCCCCCcccccccCCCCccEeeecc-ccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCc
Q 003878 329 YYCDLSALPEGLEGFKKRDGLLPFVKLIDG-FDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERD 407 (789)
Q Consensus 329 ~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~ 407 (789)
|++|++++. ...++.+ .....+.|+|||+.|++.+... ..++|++++++++. .+ ++... .
T Consensus 317 y~~d~~g~~--------------~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~-~~~~i~~~d~~~~~-~~-~lt~~--~ 377 (435)
T PRK05137 317 YVMNADGSN--------------PRRISFGGGRYSTPVWSPRGDLIAFTKQGG-GQFSIGVMKPDGSG-ER-ILTSG--F 377 (435)
T ss_pred EEEECCCCC--------------eEEeecCCCcccCeEECCCCCEEEEEEcCC-CceEEEEEECCCCc-eE-eccCC--C
Confidence 999987642 2333322 1112356999999999987653 45799999987765 33 33333 2
Q ss_pred eeeeEEEecCC-EEEEEEEeCCe---EEEEEEECCCCceeeecccCCeeEEEeeccc
Q 003878 408 VLESATAVNLN-QMIVSYLSDVK---YVLQIRDLKNGSLLHQLPIEIGSVNAISARR 460 (789)
Q Consensus 408 ~i~~v~~~~~~-~lv~~~~~~g~---~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~ 460 (789)
....+.|++++ .+++.....+. ..|+++++++++. +.++. .+.+..++|+|
T Consensus 378 ~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~-~~~~~~p~Wsp 432 (435)
T PRK05137 378 LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPT-PGDASDPAWSP 432 (435)
T ss_pred CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccC-CCCccCcccCC
Confidence 35678888864 45555554544 5899999985544 56653 33444555554
No 26
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=1.8e-15 Score=169.95 Aligned_cols=259 Identities=15% Similarity=0.103 Sum_probs=170.0
Q ss_pred CEEEEEEEcCCCCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCce
Q 003878 91 NKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIV 170 (789)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~ 170 (789)
.++.|....++ ...||+.+..+...+.++..+. .+..++|||||++|||+....+ ..+|+++|+.+|+.
T Consensus 164 ~~iayv~~~~~--~~~L~~~D~dG~~~~~l~~~~~-------~v~~p~wSPDG~~la~~s~~~~--~~~I~~~dl~~g~~ 232 (427)
T PRK02889 164 TRIAYVIKTGN--RYQLQISDADGQNAQSALSSPE-------PIISPAWSPDGTKLAYVSFESK--KPVVYVHDLATGRR 232 (427)
T ss_pred cEEEEEEccCC--ccEEEEECCCCCCceEeccCCC-------CcccceEcCCCCEEEEEEccCC--CcEEEEEECCCCCE
Confidence 46666664433 3458887753334455554332 2567899999999999876544 46899999999965
Q ss_pred ecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEE
Q 003878 171 EADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFF 250 (789)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~ 250 (789)
.. +....+ ....++|||||+.|+
T Consensus 233 ~~--l~~~~g-------------------------------------------------------~~~~~~~SPDG~~la 255 (427)
T PRK02889 233 RV--VANFKG-------------------------------------------------------SNSAPAWSPDGRTLA 255 (427)
T ss_pred EE--eecCCC-------------------------------------------------------CccceEECCCCCEEE
Confidence 43 211100 136799999999999
Q ss_pred EEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEE
Q 003878 251 YSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYY 330 (789)
Q Consensus 251 y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~ 330 (789)
|+.... ...+||..++.++.. ..+... ......+.|||||++|++.+.+.. ...||.
T Consensus 256 ~~~~~~----------------g~~~Iy~~d~~~~~~--~~lt~~---~~~~~~~~wSpDG~~l~f~s~~~g--~~~Iy~ 312 (427)
T PRK02889 256 VALSRD----------------GNSQIYTVNADGSGL--RRLTQS---SGIDTEPFFSPDGRSIYFTSDRGG--APQIYR 312 (427)
T ss_pred EEEccC----------------CCceEEEEECCCCCc--EECCCC---CCCCcCeEEcCCCCEEEEEecCCC--CcEEEE
Confidence 975422 235689888865432 222221 112235789999999999865433 467999
Q ss_pred EECCCCCCCcccccccCCCCccEeeec-cccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCcee
Q 003878 331 CDLSALPEGLEGFKKRDGLLPFVKLID-GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVL 409 (789)
Q Consensus 331 ~d~~~g~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i 409 (789)
+++.++. ...++. +.....+.|||||+.|++.++.+ ..++|+++|+.+++ .+.++... ..
T Consensus 313 ~~~~~g~--------------~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~-g~~~I~v~d~~~g~-~~~lt~~~---~~ 373 (427)
T PRK02889 313 MPASGGA--------------AQRVTFTGSYNTSPRISPDGKLLAYISRVG-GAFKLYVQDLATGQ-VTALTDTT---RD 373 (427)
T ss_pred EECCCCc--------------eEEEecCCCCcCceEECCCCCEEEEEEccC-CcEEEEEEECCCCC-eEEccCCC---Cc
Confidence 9987642 122221 11112356999999999888764 45799999998876 55554332 23
Q ss_pred eeEEEecC-CEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeeccc
Q 003878 410 ESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARR 460 (789)
Q Consensus 410 ~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~ 460 (789)
..+.|+++ ..+++.....+...|++++++ |+..+.+..+.+.+..++|+|
T Consensus 374 ~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 374 ESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred cCceECCCCCEEEEEEecCCCEEEEEEECC-CCceEEeecCCCCCCCCccCC
Confidence 56788875 457777777788899999996 665566766666666666665
No 27
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=2.2e-15 Score=167.46 Aligned_cols=252 Identities=12% Similarity=0.076 Sum_probs=165.0
Q ss_pred EEEEEEEcCCCCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcE-EEEEEecCCceEEEEEEEEcCCCce
Q 003878 92 KYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKY-LAYALSYSGSDWATIKLMRIEDQIV 170 (789)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~-la~~~~~~g~~~~~i~v~dl~tg~~ 170 (789)
..|+.+..+. ....||+.+......++++... ....+.|||||++ ++|+.. .++ ..+||++|+.+|+.
T Consensus 157 ~~~v~~~~~~-~~~~l~~~d~dg~~~~~~~~~~--------~~~~p~wSpDG~~~i~y~s~-~~~-~~~Iyv~dl~tg~~ 225 (419)
T PRK04043 157 KVVFSKYTGP-KKSNIVLADYTLTYQKVIVKGG--------LNIFPKWANKEQTAFYYTSY-GER-KPTLYKYNLYTGKK 225 (419)
T ss_pred EEEEEEccCC-CcceEEEECCCCCceeEEccCC--------CeEeEEECCCCCcEEEEEEc-cCC-CCEEEEEECCCCcE
Confidence 3444443433 3567999886545556555432 2457899999997 555443 332 35999999999976
Q ss_pred ecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEE
Q 003878 171 EADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFF 250 (789)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~ 250 (789)
.... ...+ ....+.|||||+.|+
T Consensus 226 ~~lt--~~~g-------------------------------------------------------~~~~~~~SPDG~~la 248 (419)
T PRK04043 226 EKIA--SSQG-------------------------------------------------------MLVVSDVSKDGSKLL 248 (419)
T ss_pred EEEe--cCCC-------------------------------------------------------cEEeeEECCCCCEEE
Confidence 5422 1100 134688999999999
Q ss_pred EEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEE
Q 003878 251 YSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYY 330 (789)
Q Consensus 251 y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~ 330 (789)
|+.... ...+||++++.++.. ..+...+. ....+.|||||++|+|.+.+.. ..+||+
T Consensus 249 ~~~~~~----------------g~~~Iy~~dl~~g~~--~~LT~~~~---~d~~p~~SPDG~~I~F~Sdr~g--~~~Iy~ 305 (419)
T PRK04043 249 LTMAPK----------------GQPDIYLYDTNTKTL--TQITNYPG---IDVNGNFVEDDKRIVFVSDRLG--YPNIFM 305 (419)
T ss_pred EEEccC----------------CCcEEEEEECCCCcE--EEcccCCC---ccCccEECCCCCEEEEEECCCC--CceEEE
Confidence 986432 245799999876543 23333221 1235789999999999986544 578999
Q ss_pred EECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCC-----CCceEEEEECCCCCCeEEeccCCC
Q 003878 331 CDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDA-----PKYKIIRVDLKEPNDWFEVIPEAE 405 (789)
Q Consensus 331 ~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~-----~~~~L~~~dl~~~~~~~~l~~~~~ 405 (789)
+|++++. ..+++.... ....|||||+.|++.++... ..++|+++|+++++ ++.|+...
T Consensus 306 ~dl~~g~--------------~~rlt~~g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~-~~~LT~~~- 368 (419)
T PRK04043 306 KKLNSGS--------------VEQVVFHGK-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY-IRRLTANG- 368 (419)
T ss_pred EECCCCC--------------eEeCccCCC-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC-eEECCCCC-
Confidence 9998753 222332211 12469999999999887542 23799999999886 66676543
Q ss_pred CceeeeEEEecCC-EEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEE
Q 003878 406 RDVLESATAVNLN-QMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVN 454 (789)
Q Consensus 406 ~~~i~~v~~~~~~-~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~ 454 (789)
......|++|+ .+++.....+...|++++++ |.....++...+.+.
T Consensus 369 --~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~-g~~~~~l~~~~g~~~ 415 (419)
T PRK04043 369 --VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN-YNKSFLFPLKVGKIQ 415 (419)
T ss_pred --CcCCeEECCCCCEEEEEEccCCcEEEEEEecC-CCeeEEeecCCCccC
Confidence 23357788764 56677666677789999998 654456665445443
No 28
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=99.72 E-value=2.8e-17 Score=167.66 Aligned_cols=205 Identities=16% Similarity=0.181 Sum_probs=138.8
Q ss_pred EEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCC-CChhHHhc--ccc----cC
Q 003878 522 IPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGE-YGEEWHKG--GAL----AK 594 (789)
Q Consensus 522 i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~-~g~~~~~~--~~~----~~ 594 (789)
|.+++..|++. ++.|.||++|+.+|.. .+...+...|+++||.|++||+-++.. ......+. ... ..
T Consensus 1 ~~ay~~~P~~~---~~~~~Vvv~~d~~G~~---~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~~~~~~ 74 (218)
T PF01738_consen 1 IDAYVARPEGG---GPRPAVVVIHDIFGLN---PNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRELFAPR 74 (218)
T ss_dssp EEEEEEEETTS---SSEEEEEEE-BTTBS----HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHHCHHHS
T ss_pred CeEEEEeCCCC---CCCCEEEEEcCCCCCc---hHHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHHHHhhh
Confidence 56889999873 6899999999998875 222234556667999999999765554 11111111 000 11
Q ss_pred CcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCC
Q 003878 595 KQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCS 674 (789)
Q Consensus 595 ~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p 674 (789)
......|+.+++++|.+++.++++||+++|+|+||.++..++.+. +.++|+|+..|.. . +
T Consensus 75 ~~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg~~--------~-----------~ 134 (218)
T PF01738_consen 75 PEQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYGGS--------P-----------P 134 (218)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-SS--------S-----------G
T ss_pred HHHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcCCC--------C-----------C
Confidence 224568889999999999878999999999999999999988876 6899999888800 0 0
Q ss_pred CcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEe
Q 003878 675 EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIE 754 (789)
Q Consensus 675 ~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~ 754 (789)
..+ .....++ .+|+|+++|++|+.++.++..++.++|++. +.++++++|
T Consensus 135 ~~~-----------~~~~~~~----------~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~----------~~~~~~~~y 183 (218)
T PF01738_consen 135 PPP-----------LEDAPKI----------KAPVLILFGENDPFFPPEEVEALEEALKAA----------GVDVEVHVY 183 (218)
T ss_dssp GGH-----------HHHGGG------------S-EEEEEETT-TTS-HHHHHHHHHHHHCT----------TTTEEEEEE
T ss_pred Ccc-----------hhhhccc----------CCCEeecCccCCCCCChHHHHHHHHHHHhc----------CCcEEEEEC
Confidence 000 0111122 579999999999999999999999999887 899999999
Q ss_pred CCCCcCCCCchh------hHHHHHHHHHHHHHHHh
Q 003878 755 RKAGHGVGLPTQ------KMIDEAADRYGFMAKML 783 (789)
Q Consensus 755 ~~~gH~~~~~~~------~~~~~~~~~~~fl~~~l 783 (789)
++++|+|..+.. ...+.++++++||.++|
T Consensus 184 ~ga~HgF~~~~~~~~~~~aa~~a~~~~~~ff~~~L 218 (218)
T PF01738_consen 184 PGAGHGFANPSRPPYDPAAAEDAWQRTLAFFKRHL 218 (218)
T ss_dssp TT--TTTTSTTSTT--HHHHHHHHHHHHHHHCC--
T ss_pred CCCcccccCCCCcccCHHHHHHHHHHHHHHHHhcC
Confidence 999999865332 23456677888888765
No 29
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=3.6e-15 Score=166.97 Aligned_cols=260 Identities=12% Similarity=0.072 Sum_probs=170.0
Q ss_pred EeEEeCCCCcEEEEEEecCCce----EEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccc
Q 003878 135 IKVSVSEDAKYLAYALSYSGSD----WATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRG 210 (789)
Q Consensus 135 ~~~~~SpDg~~la~~~~~~g~~----~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 210 (789)
+...++ +++|||++...+.+ .+.||++|.+++...+.+-...
T Consensus 140 g~~g~~--~~~iayv~~~~~~~~~~~~~~l~~~d~dG~~~~~lt~~~~-------------------------------- 185 (428)
T PRK01029 140 GVPGIS--SGKIIFSLSTTNSDTELKQGELWSVDYDGQNLRPLTQEHS-------------------------------- 185 (428)
T ss_pred CCCccc--cCEEEEEEeeCCcccccccceEEEEcCCCCCceEcccCCC--------------------------------
Confidence 334455 89999999765422 5799999998886543221111
Q ss_pred ceeeEEEeeeccccceeeeeeecccccceEEEEeCCcE--EEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCC
Q 003878 211 IFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKG--FFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSE 288 (789)
Q Consensus 211 ~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~--i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~ 288 (789)
...+++|||||++ |+|++... ...+||++++.++...
T Consensus 186 -------------------------~~~sP~wSPDG~~~~~~y~S~~~----------------g~~~I~~~~l~~g~~~ 224 (428)
T PRK01029 186 -------------------------LSITPTWMHIGSGFPYLYVSYKL----------------GVPKIFLGSLENPAGK 224 (428)
T ss_pred -------------------------CcccceEccCCCceEEEEEEccC----------------CCceEEEEECCCCCce
Confidence 1368999999988 55675532 2357999999876543
Q ss_pred cEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEE--ECCCCCCCcccccccCCCCccEeeeccc-c-ceeE
Q 003878 289 DILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYC--DLSALPEGLEGFKKRDGLLPFVKLIDGF-D-AQYE 364 (789)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~--d~~~g~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~ 364 (789)
.+...+.. ...+.|||||++|++...... ..++|+. +++++.. .....++.+. . ...+
T Consensus 225 --~lt~~~g~---~~~p~wSPDG~~Laf~s~~~g--~~di~~~~~~~~~g~~-----------g~~~~lt~~~~~~~~~p 286 (428)
T PRK01029 225 --KILALQGN---QLMPTFSPRKKLLAFISDRYG--NPDLFIQSFSLETGAI-----------GKPRRLLNEAFGTQGNP 286 (428)
T ss_pred --EeecCCCC---ccceEECCCCCEEEEEECCCC--CcceeEEEeecccCCC-----------CcceEeecCCCCCcCCe
Confidence 33332221 236899999999999875433 3467774 5554211 1123344321 1 1235
Q ss_pred EEecCCCEEEEEECCCCCCceEEEEECCCC-CCeEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECCCCce
Q 003878 365 VIANDDTVFTFLTNKDAPKYKIIRVDLKEP-NDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSL 442 (789)
Q Consensus 365 ~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~-~~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~~ 442 (789)
.|+|||+.|+|.++++ +..+|+.++++.. ...+.+.... .......|+++ +.+++....++..+|+++|+++|+.
T Consensus 287 ~wSPDG~~Laf~s~~~-g~~~ly~~~~~~~g~~~~~lt~~~--~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~ 363 (428)
T PRK01029 287 SFSPDGTRLVFVSNKD-GRPRIYIMQIDPEGQSPRLLTKKY--RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD 363 (428)
T ss_pred EECCCCCEEEEEECCC-CCceEEEEECcccccceEEeccCC--CCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe
Confidence 6999999999998865 4568999988642 2234444332 23456778885 4577766666777999999997776
Q ss_pred eeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCCceEEEee
Q 003878 443 LHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFR 494 (789)
Q Consensus 443 ~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~l~ 494 (789)
+.++.....+..++++||++.++|+... .....+|.+|+.+++ .+.+.
T Consensus 364 -~~Lt~~~~~~~~p~wSpDG~~L~f~~~~-~g~~~L~~vdl~~g~--~~~Lt 411 (428)
T PRK01029 364 -YQLTTSPENKESPSWAIDSLHLVYSAGN-SNESELYLISLITKK--TRKIV 411 (428)
T ss_pred -EEccCCCCCccceEECCCCCEEEEEECC-CCCceEEEEECCCCC--EEEee
Confidence 6666444445567899999998887654 345789999998884 44444
No 30
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=99.71 E-value=1e-15 Score=165.05 Aligned_cols=228 Identities=19% Similarity=0.201 Sum_probs=162.0
Q ss_pred ecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCC-HHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccc
Q 003878 514 PSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFS-VSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGAL 592 (789)
Q Consensus 514 ~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~-~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~ 592 (789)
....+ ..|++.+|.| .....++.|+|||+|||.......... ..+..++...|++|+.+|||-..+.
T Consensus 57 ~~~~~-~~~~~~~y~p-~~~~~~~~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrlaPe~---------- 124 (312)
T COG0657 57 AGPSG-DGVPVRVYRP-DRKAAATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEH---------- 124 (312)
T ss_pred cCCCC-CceeEEEECC-CCCCCCCCcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCCCCC----------
Confidence 34566 6799999999 323456789999999997766655444 4556677779999999999987763
Q ss_pred cCCcchHHHHHHHHHHHHHcC---CCCCCcEEEEeeChHHHHHHHHHHhCCC----ceeEEEecCCcccccccccccCCc
Q 003878 593 AKKQNCFDDFISASEYLISAG---YTQSRKLCIEGGSNGGLLVGACINQRPD----LFGCALAHVGVMDMLRYHKFTIGH 665 (789)
Q Consensus 593 ~~~~~~~~D~~~~~~~L~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~pd----~f~a~v~~~p~~d~~~~~~~~~~~ 665 (789)
.....++|+.+++.|+.++. -.||++|+++|+|+||.|++.++.+..+ ..++.+..+|.+|... .. . .
T Consensus 125 -~~p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~-~~-~--~ 199 (312)
T COG0657 125 -PFPAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTS-SA-A--S 199 (312)
T ss_pred -CCCchHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcc-cc-c--c
Confidence 34567899999999999874 4799999999999999999988776443 5788999999999875 10 0 0
Q ss_pred cchhhcCC--CCcHHHH--HHHH------------hcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHH
Q 003878 666 AWVSDFGC--SEEEEEF--YWLI------------KYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLL 729 (789)
Q Consensus 666 ~~~~e~g~--p~~~~~~--~~l~------------~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~ 729 (789)
..+++. .-..... .... ..+|+.... . ...||+++++|+.|...+ ++..+.
T Consensus 200 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~spl~~~~-~--------~~lPP~~i~~a~~D~l~~--~~~~~a 266 (312)
T COG0657 200 --LPGYGEADLLDAAAILAWFADLYLGAAPDREDPEASPLASDD-L--------SGLPPTLIQTAEFDPLRD--EGEAYA 266 (312)
T ss_pred --hhhcCCccccCHHHHHHHHHHHhCcCccccCCCccCcccccc-c--------cCCCCEEEEecCCCcchh--HHHHHH
Confidence 011111 1010000 0111 123433322 1 126899999999999988 999999
Q ss_pred HHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCch-hhHHHHHHHHHHHHHH
Q 003878 730 ATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPT-QKMIDEAADRYGFMAK 781 (789)
Q Consensus 730 ~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~-~~~~~~~~~~~~fl~~ 781 (789)
++|+++ |.++++..+++..|++.... ....+....+..|+..
T Consensus 267 ~~L~~a----------gv~~~~~~~~g~~H~f~~~~~~~a~~~~~~~~~~l~~ 309 (312)
T COG0657 267 ERLRAA----------GVPVELRVYPGMIHGFDLLTGPEARSALRQIAAFLRA 309 (312)
T ss_pred HHHHHc----------CCeEEEEEeCCcceeccccCcHHHHHHHHHHHHHHHH
Confidence 999998 99999999999999884322 2234445666677663
No 31
>COG1647 Esterase/lipase [General function prediction only]
Probab=99.71 E-value=1.3e-16 Score=153.28 Aligned_cols=217 Identities=15% Similarity=0.182 Sum_probs=157.9
Q ss_pred cCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHH
Q 003878 529 KKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEY 608 (789)
Q Consensus 529 p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~ 608 (789)
|+.+...+.+-.||++||--|++.+-. .....|+++||.|.+|+++|.|.-++.+-+.+..+| ++|+.++.++
T Consensus 6 p~pf~f~~G~~AVLllHGFTGt~~Dvr---~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~~~DW----~~~v~d~Y~~ 78 (243)
T COG1647 6 PKPFTFEGGNRAVLLLHGFTGTPRDVR---MLGRYLNENGYTVYAPRYPGHGTLPEDFLKTTPRDW----WEDVEDGYRD 78 (243)
T ss_pred CCCeeeccCCEEEEEEeccCCCcHHHH---HHHHHHHHCCceEecCCCCCCCCCHHHHhcCCHHHH----HHHHHHHHHH
Confidence 443333344589999999777654433 345678889999999999999998888877766666 7899999999
Q ss_pred HHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccc-ccCCccch---hhcCCCCcHHHHHHHH
Q 003878 609 LISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK-FTIGHAWV---SDFGCSEEEEEFYWLI 684 (789)
Q Consensus 609 L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~-~~~~~~~~---~e~g~p~~~~~~~~l~ 684 (789)
|.++|| +.|+|.|.|+||.+++.++.++| .+++|..++-+.+..-.. ....-.|. ..|-.+..+..-+.|+
T Consensus 79 L~~~gy---~eI~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~~~~iie~~l~y~~~~kk~e~k~~e~~~~e~~ 153 (243)
T COG1647 79 LKEAGY---DEIAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKSWRIIIEGLLEYFRNAKKYEGKDQEQIDKEMK 153 (243)
T ss_pred HHHcCC---CeEEEEeecchhHHHHHHHhhCC--ccceeeecCCcccccchhhhHHHHHHHHHhhhccCCCHHHHHHHHH
Confidence 999998 57999999999999999999998 677777666555322211 01001121 2233333333334455
Q ss_pred hcC--cc--------------cCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCc
Q 003878 685 KYS--PL--------------HNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNP 748 (789)
Q Consensus 685 ~~s--P~--------------~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 748 (789)
+|. |. .+++.+ +-|+|++.|.+|+.||.+.+..++..+.. .+
T Consensus 154 ~~~~~~~~~~~~~~~~i~~~~~~~~~I----------~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s------------~~ 211 (243)
T COG1647 154 SYKDTPMTTTAQLKKLIKDARRSLDKI----------YSPTLVVQGRQDEMVPAESANFIYDHVES------------DD 211 (243)
T ss_pred HhhcchHHHHHHHHHHHHHHHhhhhhc----------ccchhheecccCCCCCHHHHHHHHHhccC------------Cc
Confidence 554 21 344455 78999999999999999999999888763 46
Q ss_pred EEEEEeCCCCcCCCCchhhHHHHHHHHHHHHH
Q 003878 749 IIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780 (789)
Q Consensus 749 ~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 780 (789)
.+|..+.++||.+..+..+ ....+.++.||+
T Consensus 212 KeL~~~e~SgHVIt~D~Er-d~v~e~V~~FL~ 242 (243)
T COG1647 212 KELKWLEGSGHVITLDKER-DQVEEDVITFLE 242 (243)
T ss_pred ceeEEEccCCceeecchhH-HHHHHHHHHHhh
Confidence 6899999999999877664 677788999986
No 32
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=7.9e-15 Score=165.58 Aligned_cols=261 Identities=16% Similarity=0.154 Sum_probs=171.0
Q ss_pred CEEEEEEEcC--CCCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCC
Q 003878 91 NKYFYFHNTG--LQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQ 168 (789)
Q Consensus 91 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg 168 (789)
.++.|....+ ....+.||+.+..+++.+.++..+. .+..++|||||++|||+....+ ..+|+++|+.+|
T Consensus 163 ~~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~-------~~~~p~wSpDG~~la~~s~~~~--~~~l~~~~l~~g 233 (430)
T PRK00178 163 TRILYVTAERFSVNTRYTLQRSDYDGARAVTLLQSRE-------PILSPRWSPDGKRIAYVSFEQK--RPRIFVQNLDTG 233 (430)
T ss_pred eeEEEEEeeCCCCCcceEEEEECCCCCCceEEecCCC-------ceeeeeECCCCCEEEEEEcCCC--CCEEEEEECCCC
Confidence 4566655433 2345678887765455556554432 2578899999999999876544 468999999998
Q ss_pred ceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcE
Q 003878 169 IVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKG 248 (789)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~ 248 (789)
+... +....+ ....++|||||+.
T Consensus 234 ~~~~--l~~~~g-------------------------------------------------------~~~~~~~SpDG~~ 256 (430)
T PRK00178 234 RREQ--ITNFEG-------------------------------------------------------LNGAPAWSPDGSK 256 (430)
T ss_pred CEEE--ccCCCC-------------------------------------------------------CcCCeEECCCCCE
Confidence 6543 222100 1357999999999
Q ss_pred EEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEE
Q 003878 249 FFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKV 328 (789)
Q Consensus 249 i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i 328 (789)
|+|+.... ...+||++++.++... .+.... .....+.|||||++|++.+.+.. ...|
T Consensus 257 la~~~~~~----------------g~~~Iy~~d~~~~~~~--~lt~~~---~~~~~~~~spDg~~i~f~s~~~g--~~~i 313 (430)
T PRK00178 257 LAFVLSKD----------------GNPEIYVMDLASRQLS--RVTNHP---AIDTEPFWGKDGRTLYFTSDRGG--KPQI 313 (430)
T ss_pred EEEEEccC----------------CCceEEEEECCCCCeE--EcccCC---CCcCCeEECCCCCEEEEEECCCC--CceE
Confidence 99986432 2357999998875432 233222 12235789999999999875433 4679
Q ss_pred EEEECCCCCCCcccccccCCCCccEeeec-cccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCc
Q 003878 329 YYCDLSALPEGLEGFKKRDGLLPFVKLID-GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERD 407 (789)
Q Consensus 329 ~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~ 407 (789)
|++++.++. ...++. +.....+.|+|||+.+++.+..+ ..++|+++|+++++ .+.+.....
T Consensus 314 y~~d~~~g~--------------~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~-~~~~l~~~dl~tg~-~~~lt~~~~-- 375 (430)
T PRK00178 314 YKVNVNGGR--------------AERVTFVGNYNARPRLSADGKTLVMVHRQD-GNFHVAAQDLQRGS-VRILTDTSL-- 375 (430)
T ss_pred EEEECCCCC--------------EEEeecCCCCccceEECCCCCEEEEEEccC-CceEEEEEECCCCC-EEEccCCCC--
Confidence 999998752 222322 11112356999999999988754 46789999999876 455543221
Q ss_pred eeeeEEEecC-CEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeeccc
Q 003878 408 VLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARR 460 (789)
Q Consensus 408 ~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~ 460 (789)
.....|+++ ..+++....++...|++++++ |...+.++.+.+.+..++|++
T Consensus 376 -~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 376 -DESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred -CCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence 234567775 456676777778899999997 554456665556565556654
No 33
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.69 E-value=1.6e-15 Score=155.21 Aligned_cols=216 Identities=18% Similarity=0.216 Sum_probs=160.4
Q ss_pred EEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecC--CCCC--C-
Q 003878 509 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRG--GGEY--G- 583 (789)
Q Consensus 509 ~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG--~g~~--g- 583 (789)
+.+.+++.| .++++++.+|++. ++.|.||.+|+-+|... ... .....|+++||++++||+=+ +... +
T Consensus 3 ~~v~~~~~~--~~~~~~~a~P~~~---~~~P~VIv~hei~Gl~~--~i~-~~a~rlA~~Gy~v~~Pdl~~~~~~~~~~~~ 74 (236)
T COG0412 3 TDVTIPAPD--GELPAYLARPAGA---GGFPGVIVLHEIFGLNP--HIR-DVARRLAKAGYVVLAPDLYGRQGDPTDIED 74 (236)
T ss_pred cceEeeCCC--ceEeEEEecCCcC---CCCCEEEEEecccCCch--HHH-HHHHHHHhCCcEEEechhhccCCCCCcccc
Confidence 345666655 5999999999973 44499999999988643 333 34556667999999999754 2211 1
Q ss_pred -hhHHhcc--cccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccc
Q 003878 584 -EEWHKGG--ALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK 660 (789)
Q Consensus 584 -~~~~~~~--~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~ 660 (789)
......+ ..........|+.++++||..++.++++||+++|+|+||.+++.++.+.| .++|+|+..|..-
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v~fyg~~~------ 147 (236)
T COG0412 75 EPAELETGLVERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAVAFYGGLI------ 147 (236)
T ss_pred cHHHHhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC-CccEEEEecCCCC------
Confidence 1122221 01111456899999999999999899999999999999999999999977 7899988777321
Q ss_pred ccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCC
Q 003878 661 FTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSL 740 (789)
Q Consensus 661 ~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~ 740 (789)
... + ....++ ..|+|+.+|..|+.+|.....++.+++.+.
T Consensus 148 ----~~~------~---------------~~~~~~----------~~pvl~~~~~~D~~~p~~~~~~~~~~~~~~----- 187 (236)
T COG0412 148 ----ADD------T---------------ADAPKI----------KVPVLLHLAGEDPYIPAADVDALAAALEDA----- 187 (236)
T ss_pred ----CCc------c---------------cccccc----------cCcEEEEecccCCCCChhHHHHHHHHHHhc-----
Confidence 000 0 012233 689999999999999999999999999987
Q ss_pred CCCCCCCcEEEEEeCCCCcCCCCch---------hhHHHHHHHHHHHHHHHhC
Q 003878 741 ENSPQTNPIIGRIERKAGHGVGLPT---------QKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 741 ~~~~~~~~~~l~~~~~~gH~~~~~~---------~~~~~~~~~~~~fl~~~l~ 784 (789)
+..+.+.+|+++.|+|..+. ....+...++++||.++++
T Consensus 188 -----~~~~~~~~y~ga~H~F~~~~~~~~~~y~~~aa~~a~~~~~~ff~~~~~ 235 (236)
T COG0412 188 -----GVKVDLEIYPGAGHGFANDRADYHPGYDAAAAEDAWQRVLAFFKRLLG 235 (236)
T ss_pred -----CCCeeEEEeCCCccccccCCCcccccCCHHHHHHHHHHHHHHHHHhcc
Confidence 77899999999999987542 1234567789999998876
No 34
>PHA02857 monoglyceride lipase; Provisional
Probab=99.69 E-value=1.9e-15 Score=160.05 Aligned_cols=233 Identities=12% Similarity=0.086 Sum_probs=150.0
Q ss_pred EecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccc
Q 003878 513 VPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGAL 592 (789)
Q Consensus 513 ~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~ 592 (789)
+.+.|| .++++.++.|.+ .+.|+|+++||..+. ...|.. ....|.++||.|+++|.||.|..... . ...
T Consensus 5 ~~~~~g-~~l~~~~~~~~~----~~~~~v~llHG~~~~--~~~~~~-~~~~l~~~g~~via~D~~G~G~S~~~--~-~~~ 73 (276)
T PHA02857 5 MFNLDN-DYIYCKYWKPIT----YPKALVFISHGAGEH--SGRYEE-LAENISSLGILVFSHDHIGHGRSNGE--K-MMI 73 (276)
T ss_pred eecCCC-CEEEEEeccCCC----CCCEEEEEeCCCccc--cchHHH-HHHHHHhCCCEEEEccCCCCCCCCCc--c-CCc
Confidence 345699 999999997752 456899999996543 334443 34556558999999999998864321 0 000
Q ss_pred cCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccc--------------
Q 003878 593 AKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY-------------- 658 (789)
Q Consensus 593 ~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~-------------- 658 (789)
..-...++|++..++++... + ...+++++|+|+||.+++.++.++|++++++|+.+|..+....
T Consensus 74 ~~~~~~~~d~~~~l~~~~~~-~-~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~~~~~~~~~~~~~~ 151 (276)
T PHA02857 74 DDFGVYVRDVVQHVVTIKST-Y-PGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVNAEAVPRLNLLAAKLMGIF 151 (276)
T ss_pred CCHHHHHHHHHHHHHHHHhh-C-CCCCEEEEEcCchHHHHHHHHHhCccccceEEEeccccccccccHHHHHHHHHHHHh
Confidence 11112357777777776654 2 2357999999999999999999999999999999997653211
Q ss_pred ccccCCccchhhcCCCCcHHHHHHHHhcCcc----------------------cCCCCCCCCCCCCCCCCCeEEEEecCC
Q 003878 659 HKFTIGHAWVSDFGCSEEEEEFYWLIKYSPL----------------------HNVRRPWEQNPDKPFQYPSTLLLTADH 716 (789)
Q Consensus 659 ~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~----------------------~~v~~~~~~~~~~~~~~pp~Li~~g~~ 716 (789)
........+...+-.....+.. ...++|+ ..+.++ ..|+|+++|++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i----------~~Pvliv~G~~ 219 (276)
T PHA02857 152 YPNKIVGKLCPESVSRDMDEVY--KYQYDPLVNHEKIKAGFASQVLKATNKVRKIIPKI----------KTPILILQGTN 219 (276)
T ss_pred CCCCccCCCCHhhccCCHHHHH--HHhcCCCccCCCccHHHHHHHHHHHHHHHHhcccC----------CCCEEEEecCC
Confidence 0000000000000000000000 0011111 123333 68999999999
Q ss_pred CCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhh-HHHHHHHHHHHHHHHh
Q 003878 717 DDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQK-MIDEAADRYGFMAKML 783 (789)
Q Consensus 717 D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~-~~~~~~~~~~fl~~~l 783 (789)
|..||+..+.++.+.+.. .+++.+++++||........ +.+.++++.+||..+.
T Consensus 220 D~i~~~~~~~~l~~~~~~-------------~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~~ 274 (276)
T PHA02857 220 NEISDVSGAYYFMQHANC-------------NREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNRV 274 (276)
T ss_pred CCcCChHHHHHHHHHccC-------------CceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHhc
Confidence 999999999888776531 35889999999987654332 4567889999998864
No 35
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=1.3e-14 Score=163.65 Aligned_cols=262 Identities=16% Similarity=0.119 Sum_probs=170.8
Q ss_pred CCEEEEEEEcCC--CCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCC
Q 003878 90 GNKYFYFHNTGL--QPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIED 167 (789)
Q Consensus 90 g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~t 167 (789)
+.++.|....+. .....||+.+...++.+.|+..+ ..+.+++|||||++|||+....+ ..+|+++|+.+
T Consensus 167 ~~~ia~v~~~~~~~~~~~~l~i~D~~g~~~~~lt~~~-------~~v~~p~wSpDg~~la~~s~~~~--~~~l~~~dl~~ 237 (433)
T PRK04922 167 WTRIAYVTVSGAGGAMRYALQVADSDGYNPQTILRSA-------EPILSPAWSPDGKKLAYVSFERG--RSAIYVQDLAT 237 (433)
T ss_pred cceEEEEEEeCCCCCceEEEEEECCCCCCceEeecCC-------CccccccCCCCCCEEEEEecCCC--CcEEEEEECCC
Confidence 346777665432 23467888875444455665433 23568899999999999875444 57899999999
Q ss_pred CceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCc
Q 003878 168 QIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSK 247 (789)
Q Consensus 168 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~ 247 (789)
|+... +....+ ....++|||||+
T Consensus 238 g~~~~--l~~~~g-------------------------------------------------------~~~~~~~SpDG~ 260 (433)
T PRK04922 238 GQREL--VASFRG-------------------------------------------------------INGAPSFSPDGR 260 (433)
T ss_pred CCEEE--eccCCC-------------------------------------------------------CccCceECCCCC
Confidence 86543 221100 135789999999
Q ss_pred EEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceE
Q 003878 248 GFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNK 327 (789)
Q Consensus 248 ~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~ 327 (789)
.|+|+.... ...+||++++.++... .+.... .....+.|||||++|++.+.+.. ...
T Consensus 261 ~l~~~~s~~----------------g~~~Iy~~d~~~g~~~--~lt~~~---~~~~~~~~spDG~~l~f~sd~~g--~~~ 317 (433)
T PRK04922 261 RLALTLSRD----------------GNPEIYVMDLGSRQLT--RLTNHF---GIDTEPTWAPDGKSIYFTSDRGG--RPQ 317 (433)
T ss_pred EEEEEEeCC----------------CCceEEEEECCCCCeE--ECccCC---CCccceEECCCCCEEEEEECCCC--Cce
Confidence 999885422 2357999999776432 222221 11236799999999999875443 467
Q ss_pred EEEEECCCCCCCcccccccCCCCccEeeec-cccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCC
Q 003878 328 VYYCDLSALPEGLEGFKKRDGLLPFVKLID-GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAER 406 (789)
Q Consensus 328 i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~ 406 (789)
||++++.++. ...++. +.....+.|+|||+.|++.+.. ...++|+++|+.+++ .+.+....
T Consensus 318 iy~~dl~~g~--------------~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g~-~~~Lt~~~-- 379 (433)
T PRK04922 318 IYRVAASGGS--------------AERLTFQGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTGS-VRTLTPGS-- 379 (433)
T ss_pred EEEEECCCCC--------------eEEeecCCCCccCEEECCCCCEEEEEECC-CCceeEEEEECCCCC-eEECCCCC--
Confidence 9999987742 222322 1111235699999999998764 356799999998876 55554322
Q ss_pred ceeeeEEEecCC-EEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeeccc
Q 003878 407 DVLESATAVNLN-QMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARR 460 (789)
Q Consensus 407 ~~i~~v~~~~~~-~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~ 460 (789)
....+.|++++ .+++.....+...|++++++ |...+.++.+.+.+..++|+|
T Consensus 380 -~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 380 -LDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred -CCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 23456788754 46666666677899999997 554466765555555555554
No 36
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.68 E-value=2.2e-15 Score=165.23 Aligned_cols=248 Identities=12% Similarity=0.040 Sum_probs=152.6
Q ss_pred CcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChh
Q 003878 506 FHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEE 585 (789)
Q Consensus 506 ~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~ 585 (789)
+..++..+...|| .+|.+....|.+ ..+.|+||++||..+.. ...|. .....|.++||.|+++|+||.|.....
T Consensus 59 ~~~~~~~~~~~~g-~~l~~~~~~p~~---~~~~~~iv~lHG~~~~~-~~~~~-~~~~~l~~~g~~v~~~D~~G~G~S~~~ 132 (349)
T PLN02385 59 IKTEESYEVNSRG-VEIFSKSWLPEN---SRPKAAVCFCHGYGDTC-TFFFE-GIARKIASSGYGVFAMDYPGFGLSEGL 132 (349)
T ss_pred cceeeeeEEcCCC-CEEEEEEEecCC---CCCCeEEEEECCCCCcc-chHHH-HHHHHHHhCCCEEEEecCCCCCCCCCC
Confidence 4444555666799 999998888864 24568999999964432 21222 234455558999999999998754311
Q ss_pred HHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccc------
Q 003878 586 WHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH------ 659 (789)
Q Consensus 586 ~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~------ 659 (789)
.+....-..-.+|+.+.++.+......++.++.++|||+||.+++.++.++|++++++|+.+|+..+....
T Consensus 133 ---~~~~~~~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~~~~~~~~~~~~ 209 (349)
T PLN02385 133 ---HGYIPSFDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMCKIADDVVPPPLV 209 (349)
T ss_pred ---CCCcCCHHHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEecccccccccccCchHH
Confidence 00000111224566666666654433345689999999999999999999999999999998865421110
Q ss_pred -----------ccc-C-Cccchhh--cCCCC-----------------cHHHHHHHHhcCc-ccCCCCCCCCCCCCCCCC
Q 003878 660 -----------KFT-I-GHAWVSD--FGCSE-----------------EEEEFYWLIKYSP-LHNVRRPWEQNPDKPFQY 706 (789)
Q Consensus 660 -----------~~~-~-~~~~~~e--~g~p~-----------------~~~~~~~l~~~sP-~~~v~~~~~~~~~~~~~~ 706 (789)
+.. . ......+ +.++. -....+.+..... ...+.++ .
T Consensus 210 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~i----------~ 279 (349)
T PLN02385 210 LQILILLANLLPKAKLVPQKDLAELAFRDLKKRKMAEYNVIAYKDKPRLRTAVELLRTTQEIEMQLEEV----------S 279 (349)
T ss_pred HHHHHHHHHHCCCceecCCCccccccccCHHHHHHhhcCcceeCCCcchHHHHHHHHHHHHHHHhcccC----------C
Confidence 000 0 0000000 00000 0000111111100 1122333 6
Q ss_pred CeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhh--HHHHHHHHHHHHHHHhC
Q 003878 707 PSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQK--MIDEAADRYGFMAKMLG 784 (789)
Q Consensus 707 pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~--~~~~~~~~~~fl~~~l~ 784 (789)
.|+|++||++|..||+..+.++++++.. ...++++++++||........ ....+..+.+||.+++.
T Consensus 280 ~P~Lii~G~~D~vv~~~~~~~l~~~~~~------------~~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~~~ 347 (349)
T PLN02385 280 LPLLILHGEADKVTDPSVSKFLYEKASS------------SDKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSHST 347 (349)
T ss_pred CCEEEEEeCCCCccChHHHHHHHHHcCC------------CCceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHhcc
Confidence 8999999999999999999998877642 235788999999987533222 23467889999998863
No 37
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=2.7e-14 Score=158.84 Aligned_cols=203 Identities=12% Similarity=0.148 Sum_probs=140.8
Q ss_pred ceEEEEeCCcE-EEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 238 SSIAWTHDSKG-FFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 238 ~~~~wspDg~~-i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
.++.|||||++ ++|+.... +..+||++++.++.. ..+...+ .....+.|||||++|++
T Consensus 191 ~~p~wSpDG~~~i~y~s~~~----------------~~~~Iyv~dl~tg~~--~~lt~~~---g~~~~~~~SPDG~~la~ 249 (419)
T PRK04043 191 IFPKWANKEQTAFYYTSYGE----------------RKPTLYKYNLYTGKK--EKIASSQ---GMLVVSDVSKDGSKLLL 249 (419)
T ss_pred EeEEECCCCCcEEEEEEccC----------------CCCEEEEEECCCCcE--EEEecCC---CcEEeeEECCCCCEEEE
Confidence 68999999996 77775531 234799999977643 3444322 22345789999999999
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc-ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
...... ..+||+++++++. ..+++.... ...+.|+|||+.|+|.+++. +..+||++|+++++
T Consensus 250 ~~~~~g--~~~Iy~~dl~~g~--------------~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~-g~~~Iy~~dl~~g~ 312 (419)
T PRK04043 250 TMAPKG--QPDIYLYDTNTKT--------------LTQITNYPGIDVNGNFVEDDKRIVFVSDRL-GYPNIFMKKLNSGS 312 (419)
T ss_pred EEccCC--CcEEEEEECCCCc--------------EEEcccCCCccCccEECCCCCEEEEEECCC-CCceEEEEECCCCC
Confidence 876543 6789999998752 334443221 22356999999999999885 45799999999887
Q ss_pred CeEEeccCCCCceeeeEEEecC-CEEEEEEEeC------CeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEE
Q 003878 396 DWFEVIPEAERDVLESATAVNL-NQMIVSYLSD------VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFIS 468 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~------g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~ 468 (789)
.+.++.... . ...|+++ +.+++..... +..+|+++|+++|+. +.|+.. +....++++|||+.++|+
T Consensus 313 -~~rlt~~g~-~---~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~ 385 (419)
T PRK04043 313 -VEQVVFHGK-N---NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFI 385 (419)
T ss_pred -eEeCccCCC-c---CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEE
Confidence 556654432 1 2367765 5566665543 336899999997765 677754 222357899999999888
Q ss_pred EcCCCCCcEEEEEECCCC
Q 003878 469 FTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 469 ~ss~~~P~~ly~~dl~tg 486 (789)
... ..-..++.++++..
T Consensus 386 ~~~-~~~~~L~~~~l~g~ 402 (419)
T PRK04043 386 KYL-GNQSALGIIRLNYN 402 (419)
T ss_pred Ecc-CCcEEEEEEecCCC
Confidence 654 44457899998765
No 38
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=99.66 E-value=1.1e-14 Score=172.20 Aligned_cols=259 Identities=16% Similarity=0.157 Sum_probs=174.2
Q ss_pred CCCCCCCcEEEEEEecC-----CC-ceEEEEEEEecCCCCCCCCccEEEEEc----CCCCcc-----------C---CCC
Q 003878 500 GFDRSEFHVHQVFVPSK-----DG-STKIPMFIVSKKNIKLDGSHPCLLYGY----GGFNIS-----------V---TPS 555 (789)
Q Consensus 500 ~~~~~~~~~~~~~~~s~-----dg-~~~i~~~l~~p~~~~~~~~~P~ll~~h----Gg~~~~-----------~---~~~ 555 (789)
-|+...+..|.|++.+. || .-.|.+.|++|+....+-+.|+|+..- |.-... . .+.
T Consensus 162 ~~~~~~~ire~v~Vet~~Dtd~dg~~D~v~~~i~rP~~~~~g~k~p~i~~aspY~~g~~~~~~~~~~~~~~~~l~~~~~~ 241 (767)
T PRK05371 162 VFDTSQLIREVVYVETPVDTDQDGKLDLVKVTIVRPKETASGLKVPVIMTASPYYQGTNDVANDKKLHNVDVELYAKPPR 241 (767)
T ss_pred ccCcccceEEEEEEeCCCCCCCCCCcceEEEEEECCCccCCCCccceEEecCccccCCCCcccccccccCCccccccCCc
Confidence 47777777888888764 44 245888999998754334788887542 320000 0 000
Q ss_pred ---------------------C----CHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHH
Q 003878 556 ---------------------F----SVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLI 610 (789)
Q Consensus 556 ---------------------~----~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~ 610 (789)
| ......++..+||+|++.|.||.++.+..|.. ......+|..++++||.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rGYaVV~~D~RGtg~SeG~~~~-----~~~~E~~D~~~vIeWl~ 316 (767)
T PRK05371 242 AQFTPLKTQPRKLPVGPAEESFTHINSYSLNDYFLPRGFAVVYVSGIGTRGSDGCPTT-----GDYQEIESMKAVIDWLN 316 (767)
T ss_pred cccccccccccccCCCccchhhccCcchhHHHHHHhCCeEEEEEcCCCCCCCCCcCcc-----CCHHHHHHHHHHHHHHh
Confidence 0 11234566669999999999998876544422 23556799999999999
Q ss_pred Hc--CCCC------------CCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccccc----CCccc-----
Q 003878 611 SA--GYTQ------------SRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFT----IGHAW----- 667 (789)
Q Consensus 611 ~~--~~~d------------~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~----~~~~~----- 667 (789)
.+ +++| ..||+++|.||||+++.++|+..|..++|+|+.+++.++..++... ....|
T Consensus 317 ~~~~~~~d~~~~~~~kq~WsnGkVGm~G~SY~G~~~~~aAa~~pp~LkAIVp~a~is~~yd~yr~~G~~~~~~g~~ged~ 396 (767)
T PRK05371 317 GRATAYTDRTRGKEVKADWSNGKVAMTGKSYLGTLPNAVATTGVEGLETIIPEAAISSWYDYYRENGLVRAPGGYQGEDL 396 (767)
T ss_pred hCCccccccccccccccCCCCCeeEEEEEcHHHHHHHHHHhhCCCcceEEEeeCCCCcHHHHhhcCCceeccCCcCCcch
Confidence 54 2334 5799999999999999999998899999999999998875443110 00001
Q ss_pred --hhhcC-----CC----CcHHHH-------------------HHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCC
Q 003878 668 --VSDFG-----CS----EEEEEF-------------------YWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHD 717 (789)
Q Consensus 668 --~~e~g-----~p----~~~~~~-------------------~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D 717 (789)
..++. .+ ...+.+ +++.+.++..++.++ ..|+|++||.+|
T Consensus 397 d~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~fW~~rn~~~~~~kI----------kvPvLlIhGw~D 466 (767)
T PRK05371 397 DVLAELTYSRNLLAGDYLRHNEACEKLLAELTAAQDRKTGDYNDFWDDRNYLKDADKI----------KASVLVVHGLND 466 (767)
T ss_pred hhHHHHhhhcccCcchhhcchHHHHHHHhhhhhhhhhcCCCccHHHHhCCHhhHhhCC----------CCCEEEEeeCCC
Confidence 00000 00 000111 112333455555555 789999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCC
Q 003878 718 DRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 785 (789)
Q Consensus 718 ~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 785 (789)
.+|++.++.+++++|++. +.+..|.+. ..+|....... ..+....+++||+++|+.
T Consensus 467 ~~V~~~~s~~ly~aL~~~----------g~pkkL~l~-~g~H~~~~~~~-~~d~~e~~~~Wfd~~LkG 522 (767)
T PRK05371 467 WNVKPKQVYQWWDALPEN----------GVPKKLFLH-QGGHVYPNNWQ-SIDFRDTMNAWFTHKLLG 522 (767)
T ss_pred CCCChHHHHHHHHHHHhc----------CCCeEEEEe-CCCccCCCchh-HHHHHHHHHHHHHhcccc
Confidence 999999999999999987 788888776 46797544333 357778899999999864
No 39
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=5.6e-14 Score=157.90 Aligned_cols=206 Identities=14% Similarity=0.143 Sum_probs=139.4
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
..+++|||||+.|+|+.... ...+++++++.++..+ .+...+.+ ...+.|||||++|++
T Consensus 201 ~~~p~wSPDG~~la~~s~~~----------------g~~~i~i~dl~~G~~~--~l~~~~~~---~~~~~~SPDG~~La~ 259 (429)
T PRK03629 201 LMSPAWSPDGSKLAYVTFES----------------GRSALVIQTLANGAVR--QVASFPRH---NGAPAFSPDGSKLAF 259 (429)
T ss_pred eeeeEEcCCCCEEEEEEecC----------------CCcEEEEEECCCCCeE--EccCCCCC---cCCeEECCCCCEEEE
Confidence 47899999999999986432 2346999998765432 33322221 236899999999999
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc-cceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF-DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
...... ..+||++|++++. ...++.+. ....+.|+|||+.|+|.++++ ...+||.+++++++
T Consensus 260 ~~~~~g--~~~I~~~d~~tg~--------------~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~-g~~~Iy~~d~~~g~ 322 (429)
T PRK03629 260 ALSKTG--SLNLYVMDLASGQ--------------IRQVTDGRSNNTEPTWFPDSQNLAYTSDQA-GRPQVYKVNINGGA 322 (429)
T ss_pred EEcCCC--CcEEEEEECCCCC--------------EEEccCCCCCcCceEECCCCCEEEEEeCCC-CCceEEEEECCCCC
Confidence 765432 4579999998752 23333321 223456999999999999875 35799999998876
Q ss_pred CeEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCC
Q 003878 396 DWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLI 474 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~ 474 (789)
.+.+.... .....+.++++ +.+++....++..+|+++|+++|+. +.|+.. .....++++||++.++++... ..
T Consensus 323 -~~~lt~~~--~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~~-~~~~~p~~SpDG~~i~~~s~~-~~ 396 (429)
T PRK03629 323 -PQRITWEG--SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTDT-FLDETPSIAPNGTMVIYSSSQ-GM 396 (429)
T ss_pred -eEEeecCC--CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCCC-CCCCCceECCCCCEEEEEEcC-CC
Confidence 45554333 23345677775 4566666666667899999987765 566633 223356789999988876653 23
Q ss_pred CcEEEEEECCCC
Q 003878 475 PGIVYQCNLKTE 486 (789)
Q Consensus 475 P~~ly~~dl~tg 486 (789)
...++.++++.+
T Consensus 397 ~~~l~~~~~~G~ 408 (429)
T PRK03629 397 GSVLNLVSTDGR 408 (429)
T ss_pred ceEEEEEECCCC
Confidence 456888888555
No 40
>PRK11460 putative hydrolase; Provisional
Probab=99.64 E-value=7.9e-15 Score=150.72 Aligned_cols=186 Identities=14% Similarity=0.130 Sum_probs=130.9
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCC----CCChhHHhcccccCCcch-------HHHHHH
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGG----EYGEEWHKGGALAKKQNC-------FDDFIS 604 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g----~~g~~~~~~~~~~~~~~~-------~~D~~~ 604 (789)
.+.|+||++||..++... +.. ....+...++.+.++.+||-. ..|..|.... .....+. .+.+.+
T Consensus 14 ~~~~~vIlLHG~G~~~~~--~~~-l~~~l~~~~~~~~~i~~~g~~~~~~~~g~~W~~~~-~~~~~~~~~~~~~~~~~l~~ 89 (232)
T PRK11460 14 PAQQLLLLFHGVGDNPVA--MGE-IGSWFAPAFPDALVVSVGGPEPSGNGAGRQWFSVQ-GITEDNRQARVAAIMPTFIE 89 (232)
T ss_pred CCCcEEEEEeCCCCChHH--HHH-HHHHHHHHCCCCEEECCCCCCCcCCCCCcccccCC-CCCccchHHHHHHHHHHHHH
Confidence 457899999997655332 222 344555466655666666632 2356777532 1111121 234555
Q ss_pred HHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHH
Q 003878 605 ASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLI 684 (789)
Q Consensus 605 ~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~ 684 (789)
.++++.++..++++||+++|+|+||.+++.++.++|++++++|+..+.+. . .|.
T Consensus 90 ~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~---------------~--~~~--------- 143 (232)
T PRK11460 90 TVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYA---------------S--LPE--------- 143 (232)
T ss_pred HHHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEeccccc---------------c--ccc---------
Confidence 66777777667889999999999999999999899999888876655211 0 000
Q ss_pred hcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCc
Q 003878 685 KYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLP 764 (789)
Q Consensus 685 ~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~ 764 (789)
... ..+|+|++||.+|++||++.+.+++++|++. |.++++++++++||.+..
T Consensus 144 -------~~~----------~~~pvli~hG~~D~vvp~~~~~~~~~~L~~~----------g~~~~~~~~~~~gH~i~~- 195 (232)
T PRK11460 144 -------TAP----------TATTIHLIHGGEDPVIDVAHAVAAQEALISL----------GGDVTLDIVEDLGHAIDP- 195 (232)
T ss_pred -------ccc----------CCCcEEEEecCCCCccCHHHHHHHHHHHHHC----------CCCeEEEEECCCCCCCCH-
Confidence 001 1579999999999999999999999999987 888999999999999853
Q ss_pred hhhHHHHHHHHHHHHHHHhC
Q 003878 765 TQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 765 ~~~~~~~~~~~~~fl~~~l~ 784 (789)
++.+.+.+||.+.|.
T Consensus 196 -----~~~~~~~~~l~~~l~ 210 (232)
T PRK11460 196 -----RLMQFALDRLRYTVP 210 (232)
T ss_pred -----HHHHHHHHHHHHHcc
Confidence 455677778877763
No 41
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=1.2e-13 Score=155.39 Aligned_cols=257 Identities=14% Similarity=0.078 Sum_probs=161.7
Q ss_pred eCCEEEEEEEcCC-CCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCC
Q 003878 89 RGNKYFYFHNTGL-QPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIED 167 (789)
Q Consensus 89 ~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~t 167 (789)
-+.++.|.....+ .....||+.+..+...+.|...+ ..+..++|||||++|||+.... +..+|+++|+.+
T Consensus 167 f~~ria~v~~~~~~~~~~~i~i~d~dg~~~~~lt~~~-------~~v~~p~wSPDG~~la~~s~~~--~~~~i~i~dl~t 237 (429)
T PRK01742 167 FRTRIAYVVQKNGGSQPYEVRVADYDGFNQFIVNRSS-------QPLMSPAWSPDGSKLAYVSFEN--KKSQLVVHDLRS 237 (429)
T ss_pred cCCEEEEEEEEcCCCceEEEEEECCCCCCceEeccCC-------CccccceEcCCCCEEEEEEecC--CCcEEEEEeCCC
Confidence 4567877766543 23467888875444445554433 2357899999999999987533 357899999999
Q ss_pred CceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCc
Q 003878 168 QIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSK 247 (789)
Q Consensus 168 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~ 247 (789)
|+... +....+ ....++|||||+
T Consensus 238 g~~~~--l~~~~g-------------------------------------------------------~~~~~~wSPDG~ 260 (429)
T PRK01742 238 GARKV--VASFRG-------------------------------------------------------HNGAPAFSPDGS 260 (429)
T ss_pred CceEE--EecCCC-------------------------------------------------------ccCceeECCCCC
Confidence 86432 111100 135789999999
Q ss_pred EEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceE
Q 003878 248 GFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNK 327 (789)
Q Consensus 248 ~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~ 327 (789)
.|+|+.... ...+||.+++.++.. ..+... ......+.|||||++|++.+.+.. ..+
T Consensus 261 ~La~~~~~~----------------g~~~Iy~~d~~~~~~--~~lt~~---~~~~~~~~wSpDG~~i~f~s~~~g--~~~ 317 (429)
T PRK01742 261 RLAFASSKD----------------GVLNIYVMGANGGTP--SQLTSG---AGNNTEPSWSPDGQSILFTSDRSG--SPQ 317 (429)
T ss_pred EEEEEEecC----------------CcEEEEEEECCCCCe--EeeccC---CCCcCCEEECCCCCEEEEEECCCC--Cce
Confidence 999975321 124588888866532 223222 222347899999999999875433 468
Q ss_pred EEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCc
Q 003878 328 VYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERD 407 (789)
Q Consensus 328 i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~ 407 (789)
||.++..++. . .+..... ....|+|||+.|++.+. ..++++|+.+++ ++.+....
T Consensus 318 I~~~~~~~~~--------------~-~~l~~~~-~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~-~~~lt~~~--- 372 (429)
T PRK01742 318 VYRMSASGGG--------------A-SLVGGRG-YSAQISADGKTLVMING-----DNVVKQDLTSGS-TEVLSSTF--- 372 (429)
T ss_pred EEEEECCCCC--------------e-EEecCCC-CCccCCCCCCEEEEEcC-----CCEEEEECCCCC-eEEecCCC---
Confidence 9999887642 1 1112111 12458999999988654 358889998876 45444332
Q ss_pred eeeeEEEecCCEEEEEEE-eCCeEEEEEEECCCCceeeecccCCeeEEEeeccc
Q 003878 408 VLESATAVNLNQMIVSYL-SDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARR 460 (789)
Q Consensus 408 ~i~~v~~~~~~~lv~~~~-~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~ 460 (789)
....++|++++..++... +++...+++++.+ |+..+.|..+.+.+..++|+|
T Consensus 373 ~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~-G~~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 373 LDESPSISPNGIMIIYSSTQGLGKVLQLVSAD-GRFKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred CCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCceEEccCCCCCCCCcccCC
Confidence 235677888655444444 4444456777776 766677765556565666665
No 42
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=99.63 E-value=2.3e-15 Score=152.67 Aligned_cols=185 Identities=17% Similarity=0.154 Sum_probs=124.6
Q ss_pred EEEEcCCCCccCCCCCCHHHH-HHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHc---CCCC
Q 003878 541 LLYGYGGFNISVTPSFSVSRT-ILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISA---GYTQ 616 (789)
Q Consensus 541 ll~~hGg~~~~~~~~~~~~~~-~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~---~~~d 616 (789)
|||+|||.............. .++.++|++|+.+|||-+.+ ...+..++|+.++++|+.++ -..|
T Consensus 1 v~~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~~Yrl~p~-----------~~~p~~~~D~~~a~~~l~~~~~~~~~d 69 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESHWPFAARLAAERGFVVVSIDYRLAPE-----------APFPAALEDVKAAYRWLLKNADKLGID 69 (211)
T ss_dssp EEEE--STTTSCGTTTHHHHHHHHHHHHTSEEEEEE---TTT-----------SSTTHHHHHHHHHHHHHHHTHHHHTEE
T ss_pred CEEECCcccccCChHHHHHHHHHHHhhccEEEEEeecccccc-----------ccccccccccccceeeecccccccccc
Confidence 799999977765555444444 44445899999999997654 23356789999999999987 2368
Q ss_pred CCcEEEEeeChHHHHHHHHHHhCCC----ceeEEEecCCcccccccccccCCccch--hhcC-CC-CcHHHHHH----H-
Q 003878 617 SRKLCIEGGSNGGLLVGACINQRPD----LFGCALAHVGVMDMLRYHKFTIGHAWV--SDFG-CS-EEEEEFYW----L- 683 (789)
Q Consensus 617 ~~~i~i~G~S~GG~l~~~~~~~~pd----~f~a~v~~~p~~d~~~~~~~~~~~~~~--~e~g-~p-~~~~~~~~----l- 683 (789)
+++|+++|.|+||.|++.++.+..+ ..+++++.+|++|+..... ..+. .++. .+ -.....+. +
T Consensus 70 ~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (211)
T PF07859_consen 70 PERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDLQDFDG----PSYDDSNENKDDPFLPAPKIDWFWKLYL 145 (211)
T ss_dssp EEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSSTSTSSC----HHHHHHHHHSTTSSSBHHHHHHHHHHHH
T ss_pred ccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccchhccc----cccccccccccccccccccccccccccc
Confidence 9999999999999999998875433 4899999999988711100 0010 0010 01 01111111 1
Q ss_pred -------HhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCC
Q 003878 684 -------IKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERK 756 (789)
Q Consensus 684 -------~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~ 756 (789)
...||+.. ... ...||+++++|+.|..+ .++.+|+++|++. |.+++++++++
T Consensus 146 ~~~~~~~~~~sp~~~-~~~--------~~~Pp~~i~~g~~D~l~--~~~~~~~~~L~~~----------gv~v~~~~~~g 204 (211)
T PF07859_consen 146 PGSDRDDPLASPLNA-SDL--------KGLPPTLIIHGEDDVLV--DDSLRFAEKLKKA----------GVDVELHVYPG 204 (211)
T ss_dssp STGGTTSTTTSGGGS-SCC--------TTCHEEEEEEETTSTTH--HHHHHHHHHHHHT----------T-EEEEEEETT
T ss_pred ccccccccccccccc-ccc--------ccCCCeeeeccccccch--HHHHHHHHHHHHC----------CCCEEEEEECC
Confidence 12355544 121 24799999999999765 6889999999998 99999999999
Q ss_pred CCcCC
Q 003878 757 AGHGV 761 (789)
Q Consensus 757 ~gH~~ 761 (789)
.+|++
T Consensus 205 ~~H~f 209 (211)
T PF07859_consen 205 MPHGF 209 (211)
T ss_dssp EETTG
T ss_pred CeEEe
Confidence 99986
No 43
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=9.8e-14 Score=156.02 Aligned_cols=235 Identities=13% Similarity=0.103 Sum_probs=162.0
Q ss_pred cccceeeEEEeeeccccceeeeeeec-----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccE
Q 003878 208 LRGIFFFFYLFSLVKSTIYSFWSVVS-----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHE 276 (789)
Q Consensus 208 ~~~~~~~~~~~~s~~~g~~~l~~~~~-----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (789)
.+|.|..+++|.++..+..+||.++. .-...+++|||||+.|+|..... ...+
T Consensus 158 ~~g~f~~~iayv~~~~~~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~----------------~~~~ 221 (427)
T PRK02889 158 ERGVFSTRIAYVIKTGNRYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFES----------------KKPV 221 (427)
T ss_pred CCcccccEEEEEEccCCccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccC----------------CCcE
Confidence 47899999999998888899998876 11235789999999999986532 2346
Q ss_pred EEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeee
Q 003878 277 FYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI 356 (789)
Q Consensus 277 i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~ 356 (789)
||++++.++... .+...+ .....+.|||||++|++...... ..+||++|+.++. ...++
T Consensus 222 I~~~dl~~g~~~--~l~~~~---g~~~~~~~SPDG~~la~~~~~~g--~~~Iy~~d~~~~~--------------~~~lt 280 (427)
T PRK02889 222 VYVHDLATGRRR--VVANFK---GSNSAPAWSPDGRTLAVALSRDG--NSQIYTVNADGSG--------------LRRLT 280 (427)
T ss_pred EEEEECCCCCEE--EeecCC---CCccceEECCCCCEEEEEEccCC--CceEEEEECCCCC--------------cEECC
Confidence 999999776432 232222 12346899999999998765433 5789999987642 22333
Q ss_pred cccc-ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEE
Q 003878 357 DGFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQI 434 (789)
Q Consensus 357 ~~~~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~ 434 (789)
.... ...+.|+|||++|+|.+++. ...+||.+++.++. .+.++.+. .......|+++ +.+++....++..+|++
T Consensus 281 ~~~~~~~~~~wSpDG~~l~f~s~~~-g~~~Iy~~~~~~g~-~~~lt~~g--~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v 356 (427)
T PRK02889 281 QSSGIDTEPFFSPDGRSIYFTSDRG-GAPQIYRMPASGGA-AQRVTFTG--SYNTSPRISPDGKLLAYISRVGGAFKLYV 356 (427)
T ss_pred CCCCCCcCeEEcCCCCEEEEEecCC-CCcEEEEEECCCCc-eEEEecCC--CCcCceEECCCCCEEEEEEccCCcEEEEE
Confidence 3211 12356999999999988864 45789999988765 45554333 22335677775 45666555666678999
Q ss_pred EECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 435 RDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 435 ~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
+|+++|+. +.++... ....++++||++.++++...- .-..++.+++..+
T Consensus 357 ~d~~~g~~-~~lt~~~-~~~~p~~spdg~~l~~~~~~~-g~~~l~~~~~~g~ 405 (427)
T PRK02889 357 QDLATGQV-TALTDTT-RDESPSFAPNGRYILYATQQG-GRSVLAAVSSDGR 405 (427)
T ss_pred EECCCCCe-EEccCCC-CccCceECCCCCEEEEEEecC-CCEEEEEEECCCC
Confidence 99987765 5565332 234678999999998877543 3357888888543
No 44
>PRK10749 lysophospholipase L2; Provisional
Probab=99.63 E-value=1.2e-14 Score=157.87 Aligned_cols=245 Identities=14% Similarity=0.093 Sum_probs=148.0
Q ss_pred EEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHH
Q 003878 508 VHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWH 587 (789)
Q Consensus 508 ~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~ 587 (789)
.+...+...|| .++.+....|. .+.|+||++||..+.. ..|.. ....+.++||.|+++|+||.|..+....
T Consensus 30 ~~~~~~~~~~g-~~l~~~~~~~~-----~~~~~vll~HG~~~~~--~~y~~-~~~~l~~~g~~v~~~D~~G~G~S~~~~~ 100 (330)
T PRK10749 30 REEAEFTGVDD-IPIRFVRFRAP-----HHDRVVVICPGRIESY--VKYAE-LAYDLFHLGYDVLIIDHRGQGRSGRLLD 100 (330)
T ss_pred ccceEEEcCCC-CEEEEEEccCC-----CCCcEEEEECCccchH--HHHHH-HHHHHHHCCCeEEEEcCCCCCCCCCCCC
Confidence 34566777899 88888776543 2347899999964321 12322 2333444999999999999887543221
Q ss_pred hcccccCCcchH----HHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccc---
Q 003878 588 KGGALAKKQNCF----DDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK--- 660 (789)
Q Consensus 588 ~~~~~~~~~~~~----~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~--- 660 (789)
.... .....+ +|+.+.++.++.. .+..++.++|||+||.++..++.++|++++++|+.+|.........
T Consensus 101 ~~~~--~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~ 176 (330)
T PRK10749 101 DPHR--GHVERFNDYVDDLAAFWQQEIQP--GPYRKRYALAHSMGGAILTLFLQRHPGVFDAIALCAPMFGIVLPLPSWM 176 (330)
T ss_pred CCCc--CccccHHHHHHHHHHHHHHHHhc--CCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEECchhccCCCCCcHH
Confidence 1000 011234 4455555554433 2446899999999999999999999999999999988653210000
Q ss_pred ----------cc--------CCccchhhc-C-C--CCcHHHHHH-HH--hcCcc----------------------cCCC
Q 003878 661 ----------FT--------IGHAWVSDF-G-C--SEEEEEFYW-LI--KYSPL----------------------HNVR 693 (789)
Q Consensus 661 ----------~~--------~~~~~~~e~-g-~--p~~~~~~~~-l~--~~sP~----------------------~~v~ 693 (789)
.. ....|.... . + ..+++.++. ++ ...|. ..+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (330)
T PRK10749 177 ARRILNWAEGHPRIRDGYAIGTGRWRPLPFAINVLTHSRERYRRNLRFYADDPELRVGGPTYHWVRESILAGEQVLAGAG 256 (330)
T ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhCCCcccCCCcHHHHHHHHHHHHHHHhhcc
Confidence 00 000010000 0 0 011211110 11 11221 1222
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchh-hHHHHH
Q 003878 694 RPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQ-KMIDEA 772 (789)
Q Consensus 694 ~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~-~~~~~~ 772 (789)
+ ...|+|+++|++|..|++..+.+++++++.+ .......++++++++||....... .+...+
T Consensus 257 ~----------i~~P~Lii~G~~D~vv~~~~~~~~~~~l~~~-------~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~ 319 (330)
T PRK10749 257 D----------ITTPLLLLQAEEERVVDNRMHDRFCEARTAA-------GHPCEGGKPLVIKGAYHEILFEKDAMRSVAL 319 (330)
T ss_pred C----------CCCCEEEEEeCCCeeeCHHHHHHHHHHHhhc-------CCCCCCceEEEeCCCcchhhhCCcHHHHHHH
Confidence 2 2679999999999999999999999988765 000123579999999998654332 235677
Q ss_pred HHHHHHHHHH
Q 003878 773 ADRYGFMAKM 782 (789)
Q Consensus 773 ~~~~~fl~~~ 782 (789)
..+.+||+++
T Consensus 320 ~~i~~fl~~~ 329 (330)
T PRK10749 320 NAIVDFFNRH 329 (330)
T ss_pred HHHHHHHhhc
Confidence 8899998764
No 45
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=1.5e-13 Score=154.93 Aligned_cols=206 Identities=18% Similarity=0.179 Sum_probs=140.3
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
..+++|||||+.|+|+.... ...+||++++.++.. ..+...+ .....+.|||||++|++
T Consensus 206 v~~p~wSpDg~~la~~s~~~----------------~~~~l~~~dl~~g~~--~~l~~~~---g~~~~~~~SpDG~~l~~ 264 (433)
T PRK04922 206 ILSPAWSPDGKKLAYVSFER----------------GRSAIYVQDLATGQR--ELVASFR---GINGAPSFSPDGRRLAL 264 (433)
T ss_pred cccccCCCCCCEEEEEecCC----------------CCcEEEEEECCCCCE--EEeccCC---CCccCceECCCCCEEEE
Confidence 47899999999999986532 245799999976543 2332222 12236799999999998
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccc-eeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
...... ..+||++|++++. ...++..... ..+.|+|||+.|++.+++. +..+||.+++++++
T Consensus 265 ~~s~~g--~~~Iy~~d~~~g~--------------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~-g~~~iy~~dl~~g~ 327 (433)
T PRK04922 265 TLSRDG--NPEIYVMDLGSRQ--------------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRG-GRPQIYRVAASGGS 327 (433)
T ss_pred EEeCCC--CceEEEEECCCCC--------------eEECccCCCCccceEECCCCCEEEEEECCC-CCceEEEEECCCCC
Confidence 775443 4689999998752 2233332111 2356999999999998875 34689999998876
Q ss_pred CeEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCC
Q 003878 396 DWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLI 474 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~ 474 (789)
.+.++... .....+.|+++ +.+++....++..+|+++++++|+. +.++... ....+++++|++.++++... ..
T Consensus 328 -~~~lt~~g--~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~-~~Lt~~~-~~~~p~~spdG~~i~~~s~~-~g 401 (433)
T PRK04922 328 -AERLTFQG--NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV-RTLTPGS-LDESPSFAPNGSMVLYATRE-GG 401 (433)
T ss_pred -eEEeecCC--CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe-EECCCCC-CCCCceECCCCCEEEEEEec-CC
Confidence 55555433 22345778875 4566655555566899999987765 5665432 23356789999988887654 34
Q ss_pred CcEEEEEECCCC
Q 003878 475 PGIVYQCNLKTE 486 (789)
Q Consensus 475 P~~ly~~dl~tg 486 (789)
-..+|.++++.+
T Consensus 402 ~~~L~~~~~~g~ 413 (433)
T PRK04922 402 RGVLAAVSTDGR 413 (433)
T ss_pred ceEEEEEECCCC
Confidence 468999998655
No 46
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=99.62 E-value=3.6e-14 Score=143.60 Aligned_cols=244 Identities=14% Similarity=0.095 Sum_probs=164.0
Q ss_pred EEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHH
Q 003878 508 VHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWH 587 (789)
Q Consensus 508 ~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~ 587 (789)
...-.++..+| .++-.....|.+. ..+.-+|+++||. +......|.....++ ++.||.|..+|++|.|... .
T Consensus 27 ~~~~~~~n~rG-~~lft~~W~p~~~--~~pr~lv~~~HG~-g~~~s~~~~~~a~~l-~~~g~~v~a~D~~GhG~Sd---G 98 (313)
T KOG1455|consen 27 YSESFFTNPRG-AKLFTQSWLPLSG--TEPRGLVFLCHGY-GEHSSWRYQSTAKRL-AKSGFAVYAIDYEGHGRSD---G 98 (313)
T ss_pred eeeeeEEcCCC-CEeEEEecccCCC--CCCceEEEEEcCC-cccchhhHHHHHHHH-HhCCCeEEEeeccCCCcCC---C
Confidence 44456778899 8887777777652 2566788888984 444455666544444 4599999999999987532 1
Q ss_pred hcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccc-------
Q 003878 588 KGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK------- 660 (789)
Q Consensus 588 ~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~------- 660 (789)
..+.-..-...++|+++-.+....+.-..--..+++|+||||.+++.++.++|+.+.++|..+|++-...-..
T Consensus 99 l~~yi~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~i~~~~kp~p~v~~ 178 (313)
T KOG1455|consen 99 LHAYVPSFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCKISEDTKPHPPVIS 178 (313)
T ss_pred CcccCCcHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecccccCCccCCCcHHHH
Confidence 1112222334567777777776666544445899999999999999999999999999999999765533221
Q ss_pred -----ccCCccchhh----cCCC--CcHHHHHHHHhcCcc----------------------cCCCCCCCCCCCCCCCCC
Q 003878 661 -----FTIGHAWVSD----FGCS--EEEEEFYWLIKYSPL----------------------HNVRRPWEQNPDKPFQYP 707 (789)
Q Consensus 661 -----~~~~~~~~~e----~g~p--~~~~~~~~l~~~sP~----------------------~~v~~~~~~~~~~~~~~p 707 (789)
....+.|..- -..+ .+++.. .+...+|+ .+..+. .-
T Consensus 179 ~l~~l~~liP~wk~vp~~d~~~~~~kdp~~r-~~~~~npl~y~g~pRl~T~~ElLr~~~~le~~l~~v----------tv 247 (313)
T KOG1455|consen 179 ILTLLSKLIPTWKIVPTKDIIDVAFKDPEKR-KILRSDPLCYTGKPRLKTAYELLRVTADLEKNLNEV----------TV 247 (313)
T ss_pred HHHHHHHhCCceeecCCccccccccCCHHHH-HHhhcCCceecCCccHHHHHHHHHHHHHHHHhcccc----------cc
Confidence 0111122100 0111 233322 22223343 233343 67
Q ss_pred eEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCC--CchhhHHHHHHHHHHHHHHH
Q 003878 708 STLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVG--LPTQKMIDEAADRYGFMAKM 782 (789)
Q Consensus 708 p~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~--~~~~~~~~~~~~~~~fl~~~ 782 (789)
|+||+||+.|.++.+.-+.++++... ..+..+++|||.-|... .+.......+.++.+||+++
T Consensus 248 PflilHG~dD~VTDp~~Sk~Lye~A~------------S~DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 248 PFLILHGTDDKVTDPKVSKELYEKAS------------SSDKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred cEEEEecCCCcccCcHHHHHHHHhcc------------CCCCceeccccHHHHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 99999999999999999999998765 34568999999999865 34444566789999999875
No 47
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=99.61 E-value=8.4e-14 Score=147.77 Aligned_cols=244 Identities=15% Similarity=0.143 Sum_probs=166.0
Q ss_pred EEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCc---cCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCCh
Q 003878 508 VHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNI---SVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGE 584 (789)
Q Consensus 508 ~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~---~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~ 584 (789)
...+.+.. . ..|++.||.|.......+.|+|||+|||... ...+.|...+..+..+.+.+|+.+|||-..|
T Consensus 63 ~~dv~~~~--~-~~l~vRly~P~~~~~~~~~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAPE--- 136 (336)
T KOG1515|consen 63 SKDVTIDP--F-TNLPVRLYRPTSSSSETKLPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLAPE--- 136 (336)
T ss_pred eeeeEecC--C-CCeEEEEEcCCCCCcccCceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccCCC---
Confidence 45555543 3 4699999999986544789999999999544 3356666666666678999999999998765
Q ss_pred hHHhcccccCCcchHHHHHHHHHHHHHc----CCCCCCcEEEEeeChHHHHHHHHHHhC------CCceeEEEecCCccc
Q 003878 585 EWHKGGALAKKQNCFDDFISASEYLISA----GYTQSRKLCIEGGSNGGLLVGACINQR------PDLFGCALAHVGVMD 654 (789)
Q Consensus 585 ~~~~~~~~~~~~~~~~D~~~~~~~L~~~----~~~d~~~i~i~G~S~GG~l~~~~~~~~------pd~f~a~v~~~p~~d 654 (789)
..-+..++|..+|+.|+.++ ..+|++||+|+|-|+||.+|..++.+. +-..++.|+..|++.
T Consensus 137 --------h~~Pa~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~ 208 (336)
T KOG1515|consen 137 --------HPFPAAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQ 208 (336)
T ss_pred --------CCCCccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccC
Confidence 34567799999999999886 468999999999999999998876543 246899999999987
Q ss_pred ccccccccCCccchhhc-CCC-CcHHHHH-HHHhcCc---------ccCCCC-CCCCCCCCCCCCCeEEEEecCCCCCCC
Q 003878 655 MLRYHKFTIGHAWVSDF-GCS-EEEEEFY-WLIKYSP---------LHNVRR-PWEQNPDKPFQYPSTLLLTADHDDRVV 721 (789)
Q Consensus 655 ~~~~~~~~~~~~~~~e~-g~p-~~~~~~~-~l~~~sP---------~~~v~~-~~~~~~~~~~~~pp~Li~~g~~D~~V~ 721 (789)
........ ..... +.+ .....++ +++.+.| +-|.-. .. .....-...||+||++++.|...
T Consensus 209 ~~~~~~~e----~~~~~~~~~~~~~~~~~~~w~~~lP~~~~~~~~p~~np~~~~~-~~d~~~~~lp~tlv~~ag~D~L~- 282 (336)
T KOG1515|consen 209 GTDRTESE----KQQNLNGSPELARPKIDKWWRLLLPNGKTDLDHPFINPVGNSL-AKDLSGLGLPPTLVVVAGYDVLR- 282 (336)
T ss_pred CCCCCCHH----HHHhhcCCcchhHHHHHHHHHHhCCCCCCCcCCcccccccccc-ccCccccCCCceEEEEeCchhhh-
Confidence 65443210 00000 111 1111111 1121222 111111 00 00000124689999999999765
Q ss_pred cHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCC--c-hhhHHHHHHHHHHHHHHH
Q 003878 722 PLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGL--P-TQKMIDEAADRYGFMAKM 782 (789)
Q Consensus 722 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~--~-~~~~~~~~~~~~~fl~~~ 782 (789)
.+...++++|++. |.++++..+++++|++.. + .....+....+.+|+.+.
T Consensus 283 -D~~~~Y~~~Lkk~----------Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~~ 335 (336)
T KOG1515|consen 283 -DEGLAYAEKLKKA----------GVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKSN 335 (336)
T ss_pred -hhhHHHHHHHHHc----------CCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhhc
Confidence 6889999999988 999999999999998642 2 234567777788888654
No 48
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=3.8e-13 Score=151.96 Aligned_cols=206 Identities=14% Similarity=0.159 Sum_probs=139.0
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
..+++|||||+.|+|+.... ...+||++++.++..+ .+...+. ....+.|||||++|++
T Consensus 201 ~~~p~wSpDG~~la~~s~~~----------------~~~~l~~~~l~~g~~~--~l~~~~g---~~~~~~~SpDG~~la~ 259 (430)
T PRK00178 201 ILSPRWSPDGKRIAYVSFEQ----------------KRPRIFVQNLDTGRRE--QITNFEG---LNGAPAWSPDGSKLAF 259 (430)
T ss_pred eeeeeECCCCCEEEEEEcCC----------------CCCEEEEEECCCCCEE--EccCCCC---CcCCeEECCCCCEEEE
Confidence 36889999999999986532 2357999999876433 2322221 2235899999999998
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc-ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
...... ..+||++|++++. ...++.... ...+.|+|||+.|+|.++++ +..+|+.+++.+++
T Consensus 260 ~~~~~g--~~~Iy~~d~~~~~--------------~~~lt~~~~~~~~~~~spDg~~i~f~s~~~-g~~~iy~~d~~~g~ 322 (430)
T PRK00178 260 VLSKDG--NPEIYVMDLASRQ--------------LSRVTNHPAIDTEPFWGKDGRTLYFTSDRG-GKPQIYKVNVNGGR 322 (430)
T ss_pred EEccCC--CceEEEEECCCCC--------------eEEcccCCCCcCCeEECCCCCEEEEEECCC-CCceEEEEECCCCC
Confidence 875443 4789999998753 223333221 12356999999999998875 45789999998876
Q ss_pred CeEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCC
Q 003878 396 DWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLI 474 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~ 474 (789)
.+.++... .......|+++ +.+++....++..+|+++|+++|+. +.++..... ..++++||++.++|+... ..
T Consensus 323 -~~~lt~~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~~~~~-~~p~~spdg~~i~~~~~~-~g 396 (430)
T PRK00178 323 -AERVTFVG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTDTSLD-ESPSVAPNGTMLIYATRQ-QG 396 (430)
T ss_pred -EEEeecCC--CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccCCCCC-CCceECCCCCEEEEEEec-CC
Confidence 55555332 22234567764 5666666666666899999997765 666543222 245789999988887543 22
Q ss_pred CcEEEEEECCCC
Q 003878 475 PGIVYQCNLKTE 486 (789)
Q Consensus 475 P~~ly~~dl~tg 486 (789)
-..+|.++...+
T Consensus 397 ~~~l~~~~~~g~ 408 (430)
T PRK00178 397 RGVLMLVSINGR 408 (430)
T ss_pred ceEEEEEECCCC
Confidence 356888888655
No 49
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=2.7e-13 Score=153.03 Aligned_cols=235 Identities=16% Similarity=0.177 Sum_probs=159.7
Q ss_pred cccceeeEEEeeecccc---ceeeeeeec---c--------cccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCc
Q 003878 208 LRGIFFFFYLFSLVKST---IYSFWSVVS---Q--------FKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNL 273 (789)
Q Consensus 208 ~~~~~~~~~~~~s~~~g---~~~l~~~~~---~--------~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~ 273 (789)
.+|+|..+++|.+...+ .++||.++. + -...+++|||||+.|+|+.... .
T Consensus 177 ~~g~f~~riayv~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~----------------g 240 (448)
T PRK04792 177 ERGAFLTRIAYVVVNDKDKYPYQLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFEN----------------R 240 (448)
T ss_pred CCccccCEEEEEEeeCCCCCceEEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecC----------------C
Confidence 47899999999987665 468887765 1 1124789999999999986532 2
Q ss_pred ccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccE
Q 003878 274 YHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFV 353 (789)
Q Consensus 274 ~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~ 353 (789)
..+||++++.++.. ..+...+. ....+.|||||++|++...... ..+||++|++++. ..
T Consensus 241 ~~~L~~~dl~tg~~--~~lt~~~g---~~~~~~wSPDG~~La~~~~~~g--~~~Iy~~dl~tg~--------------~~ 299 (448)
T PRK04792 241 KAEIFVQDIYTQVR--EKVTSFPG---INGAPRFSPDGKKLALVLSKDG--QPEIYVVDIATKA--------------LT 299 (448)
T ss_pred CcEEEEEECCCCCe--EEecCCCC---CcCCeeECCCCCEEEEEEeCCC--CeEEEEEECCCCC--------------eE
Confidence 35799999977543 23332221 1236799999999998765443 5789999998752 22
Q ss_pred eeeccc-cceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEE
Q 003878 354 KLIDGF-DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYV 431 (789)
Q Consensus 354 ~l~~~~-~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~ 431 (789)
.++... ....+.|+|||+.|++.++++ ...+|+.+|+++++ .+.++.... ......|+++ +.+++....++..+
T Consensus 300 ~lt~~~~~~~~p~wSpDG~~I~f~s~~~-g~~~Iy~~dl~~g~-~~~Lt~~g~--~~~~~~~SpDG~~l~~~~~~~g~~~ 375 (448)
T PRK04792 300 RITRHRAIDTEPSWHPDGKSLIFTSERG-GKPQIYRVNLASGK-VSRLTFEGE--QNLGGSITPDGRSMIMVNRTNGKFN 375 (448)
T ss_pred ECccCCCCccceEECCCCCEEEEEECCC-CCceEEEEECCCCC-EEEEecCCC--CCcCeeECCCCCEEEEEEecCCceE
Confidence 333321 122356999999999998775 45799999998876 566653332 2234567765 56777666666678
Q ss_pred EEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 432 LQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 432 L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
|+++|+++|+. +.++.... ...++++||++.++|+... ..-..+|.++.+.+
T Consensus 376 I~~~dl~~g~~-~~lt~~~~-d~~ps~spdG~~I~~~~~~-~g~~~l~~~~~~G~ 427 (448)
T PRK04792 376 IARQDLETGAM-QVLTSTRL-DESPSVAPNGTMVIYSTTY-QGKQVLAAVSIDGR 427 (448)
T ss_pred EEEEECCCCCe-EEccCCCC-CCCceECCCCCEEEEEEec-CCceEEEEEECCCC
Confidence 99999987765 55653321 1245789999998887653 33456888887544
No 50
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.58 E-value=3.6e-14 Score=140.98 Aligned_cols=216 Identities=17% Similarity=0.162 Sum_probs=151.2
Q ss_pred EEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHH-HcCCeEEEEEeecCCCCCChhHH
Q 003878 509 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILM-RHLGAVFCIANIRGGGEYGEEWH 587 (789)
Q Consensus 509 ~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l-~~~G~~v~~~~~RG~g~~g~~~~ 587 (789)
+-+..+...| ..+-...+.|.. ...+++||.||. +.+.+-..+....+ ....+.++..||+|.|..+.
T Consensus 36 ~v~~~~t~rg-n~~~~~y~~~~~----~~~~~lly~hGN---a~Dlgq~~~~~~~l~~~ln~nv~~~DYSGyG~S~G--- 104 (258)
T KOG1552|consen 36 EVFKVKTSRG-NEIVCMYVRPPE----AAHPTLLYSHGN---AADLGQMVELFKELSIFLNCNVVSYDYSGYGRSSG--- 104 (258)
T ss_pred ceEEeecCCC-CEEEEEEEcCcc----ccceEEEEcCCc---ccchHHHHHHHHHHhhcccceEEEEecccccccCC---
Confidence 3444555566 566666666553 256999999997 22222111122222 22589999999999775322
Q ss_pred hcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccc-cCCcc
Q 003878 588 KGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKF-TIGHA 666 (789)
Q Consensus 588 ~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~-~~~~~ 666 (789)
.....|.++|+.++.+||.+..- .+++|+++|+|+|..-+..+|.+.| .+|+|+.+||++.++.+.. .....
T Consensus 105 ----~psE~n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~~rv~~~~~~~~~ 177 (258)
T KOG1552|consen 105 ----KPSERNLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTSGMRVAFPDTKTTY 177 (258)
T ss_pred ----CcccccchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchhhhhhhccCcceEE
Confidence 22334899999999999999865 7899999999999999999999988 8999999999998876532 21113
Q ss_pred chhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCC
Q 003878 667 WVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQT 746 (789)
Q Consensus 667 ~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~ 746 (789)
|+..| +-...++.+ .+|+|++||+.|++|+..|+.+++++.+.
T Consensus 178 ~~d~f---------------~~i~kI~~i----------~~PVLiiHgtdDevv~~sHg~~Lye~~k~------------ 220 (258)
T KOG1552|consen 178 CFDAF---------------PNIEKISKI----------TCPVLIIHGTDDEVVDFSHGKALYERCKE------------ 220 (258)
T ss_pred eeccc---------------cccCcceec----------cCCEEEEecccCceecccccHHHHHhccc------------
Confidence 33333 224566665 78999999999999999999999998765
Q ss_pred CcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHh
Q 003878 747 NPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKML 783 (789)
Q Consensus 747 ~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 783 (789)
+++-.+..++||.......+ .....-.|+...+
T Consensus 221 -~~epl~v~g~gH~~~~~~~~---yi~~l~~f~~~~~ 253 (258)
T KOG1552|consen 221 -KVEPLWVKGAGHNDIELYPE---YIEHLRRFISSVL 253 (258)
T ss_pred -cCCCcEEecCCCcccccCHH---HHHHHHHHHHHhc
Confidence 35556667999986544333 3344445554443
No 51
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=99.58 E-value=1.5e-13 Score=151.61 Aligned_cols=242 Identities=14% Similarity=0.088 Sum_probs=154.0
Q ss_pred cEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhH
Q 003878 507 HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEW 586 (789)
Q Consensus 507 ~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~ 586 (789)
+.....+...+| ..+.+..+.|.. ..+.|+||++||..+... .|.. +...|.++||.|+++|+||.|.....+
T Consensus 109 ~~~~~~~~~~~~-~~l~~~~~~p~~---~~~~~~Vl~lHG~~~~~~--~~~~-~a~~L~~~Gy~V~~~D~rGhG~S~~~~ 181 (395)
T PLN02652 109 RWATSLFYGARR-NALFCRSWAPAA---GEMRGILIIIHGLNEHSG--RYLH-FAKQLTSCGFGVYAMDWIGHGGSDGLH 181 (395)
T ss_pred eEEEEEEECCCC-CEEEEEEecCCC---CCCceEEEEECCchHHHH--HHHH-HHHHHHHCCCEEEEeCCCCCCCCCCCC
Confidence 445566778888 899999888864 235689999999755322 2332 345555589999999999988643221
Q ss_pred HhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC---ceeEEEecCCccccccccccc-
Q 003878 587 HKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPD---LFGCALAHVGVMDMLRYHKFT- 662 (789)
Q Consensus 587 ~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd---~f~a~v~~~p~~d~~~~~~~~- 662 (789)
+.......-.+|+.++++++.... ...++.++|||+||.+++.++. +|+ +++++|+.+|.+++.......
T Consensus 182 ---~~~~~~~~~~~Dl~~~l~~l~~~~--~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~sP~l~~~~~~~~~~ 255 (395)
T PLN02652 182 ---GYVPSLDYVVEDTEAFLEKIRSEN--PGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTSPALRVKPAHPIVG 255 (395)
T ss_pred ---CCCcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEECcccccccchHHHH
Confidence 101111122467788888877541 2247999999999999987764 564 789999999987653211000
Q ss_pred --------CCccc----hhhcCCC--CcHHHHHHHHhc-Ccc----------------------cCCCCCCCCCCCCCCC
Q 003878 663 --------IGHAW----VSDFGCS--EEEEEFYWLIKY-SPL----------------------HNVRRPWEQNPDKPFQ 705 (789)
Q Consensus 663 --------~~~~~----~~e~g~p--~~~~~~~~l~~~-sP~----------------------~~v~~~~~~~~~~~~~ 705 (789)
..+.+ ...++.+ .+++.. +..+ +|+ .++.++
T Consensus 256 ~~~~l~~~~~p~~~~~~~~~~~~~~s~~~~~~--~~~~~dp~~~~g~i~~~~~~~~~~~~~~l~~~L~~I---------- 323 (395)
T PLN02652 256 AVAPIFSLVAPRFQFKGANKRGIPVSRDPAAL--LAKYSDPLVYTGPIRVRTGHEILRISSYLTRNFKSV---------- 323 (395)
T ss_pred HHHHHHHHhCCCCcccCcccccCCcCCCHHHH--HHHhcCCCcccCCchHHHHHHHHHHHHHHHhhcccC----------
Confidence 00000 0001111 111110 0000 111 122333
Q ss_pred CCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCC
Q 003878 706 YPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 785 (789)
Q Consensus 706 ~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 785 (789)
..|+|++||.+|..||+.++.++++++.. ...+++++++++|....... ..+..+.+.+||..+++.
T Consensus 324 ~vPvLIi~G~~D~vvp~~~a~~l~~~~~~------------~~k~l~~~~ga~H~l~~e~~-~e~v~~~I~~FL~~~~~~ 390 (395)
T PLN02652 324 TVPFMVLHGTADRVTDPLASQDLYNEAAS------------RHKDIKLYDGFLHDLLFEPE-REEVGRDIIDWMEKRLDL 390 (395)
T ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHhcCC------------CCceEEEECCCeEEeccCCC-HHHHHHHHHHHHHHHhhc
Confidence 68999999999999999999999887653 23467889999998654322 356788899999998864
Q ss_pred C
Q 003878 786 S 786 (789)
Q Consensus 786 ~ 786 (789)
.
T Consensus 391 ~ 391 (395)
T PLN02652 391 V 391 (395)
T ss_pred c
Confidence 3
No 52
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=99.55 E-value=1.1e-13 Score=140.97 Aligned_cols=190 Identities=14% Similarity=0.113 Sum_probs=111.9
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHH-HHHcCCeEEEEEeecC------CCCCChhHHhcccccCC----cchHHH---
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTI-LMRHLGAVFCIANIRG------GGEYGEEWHKGGALAKK----QNCFDD--- 601 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~-~l~~~G~~v~~~~~RG------~g~~g~~~~~~~~~~~~----~~~~~D--- 601 (789)
...|+||++||- |... ..+. .... .+......++.++-.- +|....+|......... ...+.+
T Consensus 12 ~~~~lvi~LHG~-G~~~-~~~~-~~~~~~~~~~~~~~i~p~ap~~~~~~~~g~~~~~Wf~~~~~~~~~~~~~~~i~~s~~ 88 (216)
T PF02230_consen 12 KAKPLVILLHGY-GDSE-DLFA-LLAELNLALPNTRFISPRAPSRPVTVPGGYRMPAWFDIYDFDPEGPEDEAGIEESAE 88 (216)
T ss_dssp T-SEEEEEE--T-TS-H-HHHH-HHHHHHTCSTTEEEEEE---EEE-GGGTT-EEE-SS-BSCSSSSSEB-HHHHHHHHH
T ss_pred CCceEEEEECCC-CCCc-chhH-HHHhhcccCCceEEEeccCCCCCcccccccCCCceeeccCCCcchhhhHHHHHHHHH
Confidence 578999999995 3332 1111 1111 1222456676665321 12222378764322221 122222
Q ss_pred -HHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHH
Q 003878 602 -FISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEF 680 (789)
Q Consensus 602 -~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~ 680 (789)
+.+.++.+++.+ ++++||++.|+|+||.+++.++.++|+.++++|+.+|.+..... + .
T Consensus 89 ~l~~li~~~~~~~-i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~--------~---------~--- 147 (216)
T PF02230_consen 89 RLDELIDEEVAYG-IDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESE--------L---------E--- 147 (216)
T ss_dssp HHHHHHHHHHHTT---GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCC--------C---------H---
T ss_pred HHHHHHHHHHHcC-CChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeecccccccc--------c---------c---
Confidence 223333344444 89999999999999999999999999999999999886532110 0 0
Q ss_pred HHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcC
Q 003878 681 YWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHG 760 (789)
Q Consensus 681 ~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~ 760 (789)
...... ..+|++++||..|+.||...+.+.++.|++. +..++++.|++.||.
T Consensus 148 ---------~~~~~~---------~~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~----------~~~v~~~~~~g~gH~ 199 (216)
T PF02230_consen 148 ---------DRPEAL---------AKTPILIIHGDEDPVVPFEWAEKTAEFLKAA----------GANVEFHEYPGGGHE 199 (216)
T ss_dssp ---------CCHCCC---------CTS-EEEEEETT-SSSTHHHHHHHHHHHHCT----------T-GEEEEEETT-SSS
T ss_pred ---------cccccc---------CCCcEEEEecCCCCcccHHHHHHHHHHHHhc----------CCCEEEEEcCCCCCC
Confidence 001111 2479999999999999999999999999988 889999999999998
Q ss_pred CCCchhhHHHHHHHHHHHHHHHh
Q 003878 761 VGLPTQKMIDEAADRYGFMAKML 783 (789)
Q Consensus 761 ~~~~~~~~~~~~~~~~~fl~~~l 783 (789)
.. .+++.++.+||.+++
T Consensus 200 i~------~~~~~~~~~~l~~~~ 216 (216)
T PF02230_consen 200 IS------PEELRDLREFLEKHI 216 (216)
T ss_dssp --------HHHHHHHHHHHHHH-
T ss_pred CC------HHHHHHHHHHHhhhC
Confidence 84 256678888998764
No 53
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=99.55 E-value=1.1e-13 Score=138.70 Aligned_cols=196 Identities=13% Similarity=0.082 Sum_probs=125.5
Q ss_pred EEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChh--HHhcccccCCcchH
Q 003878 522 IPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEE--WHKGGALAKKQNCF 599 (789)
Q Consensus 522 i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~--~~~~~~~~~~~~~~ 599 (789)
+.+.||.|++.. .++.|+||.+||+.+......-...+..+.+++||+|+.|+-......... |.. .....+....
T Consensus 1 l~Y~lYvP~~~~-~~~~PLVv~LHG~~~~a~~~~~~s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~-~~~~~g~~d~ 78 (220)
T PF10503_consen 1 LSYRLYVPPGAP-RGPVPLVVVLHGCGQSAEDFAAGSGWNALADREGFIVVYPEQSRRANPQGCWNWFS-DDQQRGGGDV 78 (220)
T ss_pred CcEEEecCCCCC-CCCCCEEEEeCCCCCCHHHHHhhcCHHHHhhcCCeEEEcccccccCCCCCcccccc-cccccCccch
Confidence 357889999753 357899999999876543211122345678889999999985432222333 333 1122233444
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHH
Q 003878 600 DDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEE 679 (789)
Q Consensus 600 ~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~ 679 (789)
..+.+.+++++.+.-+|++||.+.|.|+||.|+..++..+||+|+|+...+++.--....... ....-.-|....+..
T Consensus 79 ~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~~~~a~~~~~--a~~~m~~g~~~~p~~ 156 (220)
T PF10503_consen 79 AFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVPYGCAASGAS--ALSAMRSGPRPAPAA 156 (220)
T ss_pred hhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeecccccccccCccc--HHHHhhCCCCCChHH
Confidence 556677999999888999999999999999999999999999999998887753321111100 000001122222222
Q ss_pred HHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHh
Q 003878 680 FYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYV 735 (789)
Q Consensus 680 ~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~ 735 (789)
.......++ .. .--|++|+||+.|..|.+..+.++.+.+...
T Consensus 157 ~~~a~~~~g-----~~---------~~~P~~v~hG~~D~tV~~~n~~~~~~q~~~~ 198 (220)
T PF10503_consen 157 AWGARSDAG-----AY---------PGYPRIVFHGTADTTVNPQNADQLVAQWLNV 198 (220)
T ss_pred HHHhhhhcc-----CC---------CCCCEEEEecCCCCccCcchHHHHHHHHHHc
Confidence 111111111 10 1137889999999999999999988887764
No 54
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=99.53 E-value=2.3e-13 Score=157.90 Aligned_cols=135 Identities=16% Similarity=0.154 Sum_probs=104.5
Q ss_pred ecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCC-CCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccc
Q 003878 514 PSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT-PSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGAL 592 (789)
Q Consensus 514 ~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~-~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~ 592 (789)
+++|| ++|.+.++.|++ .++.|+||++||....... ..+.......+.++||+|+++|+||.|..+..+...
T Consensus 2 ~~~DG-~~L~~~~~~P~~---~~~~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~~~~--- 74 (550)
T TIGR00976 2 PMRDG-TRLAIDVYRPAG---GGPVPVILSRTPYGKDAGLRWGLDKTEPAWFVAQGYAVVIQDTRGRGASEGEFDLL--- 74 (550)
T ss_pred cCCCC-CEEEEEEEecCC---CCCCCEEEEecCCCCchhhccccccccHHHHHhCCcEEEEEeccccccCCCceEec---
Confidence 57899 999999999986 3578999999985432210 111111223444599999999999988765443211
Q ss_pred cCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccc
Q 003878 593 AKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY 658 (789)
Q Consensus 593 ~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~ 658 (789)
.....+|+.++++||.++.+.+ .+|+++|+|+||.+++.++.++|+.++|+|+.+++.|+...
T Consensus 75 --~~~~~~D~~~~i~~l~~q~~~~-~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d~~~~ 137 (550)
T TIGR00976 75 --GSDEAADGYDLVDWIAKQPWCD-GNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWDLYRD 137 (550)
T ss_pred --CcccchHHHHHHHHHHhCCCCC-CcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccchhHh
Confidence 1456799999999999998876 69999999999999999999999999999999999987654
No 55
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=99.52 E-value=2e-13 Score=129.99 Aligned_cols=233 Identities=12% Similarity=0.115 Sum_probs=165.0
Q ss_pred CCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCC
Q 003878 504 SEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYG 583 (789)
Q Consensus 504 ~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g 583 (789)
.++.-+++...++|. +++.+|++... ...|++||+||.-|.. ..+-+...-+..+.+..|++++|||-|..-
T Consensus 50 ~n~pye~i~l~T~D~-vtL~a~~~~~E-----~S~pTlLyfh~NAGNm--Ghr~~i~~~fy~~l~mnv~ivsYRGYG~S~ 121 (300)
T KOG4391|consen 50 FNMPYERIELRTRDK-VTLDAYLMLSE-----SSRPTLLYFHANAGNM--GHRLPIARVFYVNLKMNVLIVSYRGYGKSE 121 (300)
T ss_pred cCCCceEEEEEcCcc-eeEeeeeeccc-----CCCceEEEEccCCCcc--cchhhHHHHHHHHcCceEEEEEeeccccCC
Confidence 356678999999999 99999998722 3789999999976542 222333344556699999999999965321
Q ss_pred hhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccc-c-
Q 003878 584 EEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK-F- 661 (789)
Q Consensus 584 ~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~-~- 661 (789)
. ......-.-|..++++||..+...|..+|+++|.|.||..+..++...-++..|+|...-|+.+....- +
T Consensus 122 G-------spsE~GL~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~ivENTF~SIp~~~i~~v 194 (300)
T KOG4391|consen 122 G-------SPSEEGLKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAIIVENTFLSIPHMAIPLV 194 (300)
T ss_pred C-------CccccceeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeeeeechhccchhhhhhee
Confidence 1 111223346899999999999999999999999999999999999999999999999988887643321 0
Q ss_pred -cCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCC
Q 003878 662 -TIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSL 740 (789)
Q Consensus 662 -~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~ 740 (789)
..+-.+...|. ++ ..++.+..+.. +..|.|++.|..|..|||-+.+++++..-..
T Consensus 195 ~p~~~k~i~~lc-------~k--n~~~S~~ki~~----------~~~P~LFiSGlkDelVPP~~Mr~Ly~~c~S~----- 250 (300)
T KOG4391|consen 195 FPFPMKYIPLLC-------YK--NKWLSYRKIGQ----------CRMPFLFISGLKDELVPPVMMRQLYELCPSR----- 250 (300)
T ss_pred ccchhhHHHHHH-------HH--hhhcchhhhcc----------ccCceEEeecCccccCCcHHHHHHHHhCchh-----
Confidence 00001111111 10 13334444443 4789999999999999999999998865432
Q ss_pred CCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCC
Q 003878 741 ENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 785 (789)
Q Consensus 741 ~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 785 (789)
..++..||++.|.-.--.. ..+..+-+||.+....
T Consensus 251 -------~Krl~eFP~gtHNDT~i~d---GYfq~i~dFlaE~~~~ 285 (300)
T KOG4391|consen 251 -------TKRLAEFPDGTHNDTWICD---GYFQAIEDFLAEVVKS 285 (300)
T ss_pred -------hhhheeCCCCccCceEEec---cHHHHHHHHHHHhccC
Confidence 3478999999997443222 3445667788776543
No 56
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.51 E-value=4.1e-12 Score=139.29 Aligned_cols=322 Identities=16% Similarity=0.128 Sum_probs=183.7
Q ss_pred eCCEEEEEEEcCCCC----eeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEE
Q 003878 89 RGNKYFYFHNTGLQP----QSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMR 164 (789)
Q Consensus 89 ~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~d 164 (789)
+|.++++..+...+. ...+|+.+..+++.+.|..+. ..+..+.|||||++|||+.+ .+|++.+
T Consensus 3 d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~-------~~~~~~~~sP~g~~~~~v~~------~nly~~~ 69 (353)
T PF00930_consen 3 DGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPP-------PKLQDAKWSPDGKYIAFVRD------NNLYLRD 69 (353)
T ss_dssp TSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EE-------TTBSEEEE-SSSTEEEEEET------TEEEEES
T ss_pred CCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCc-------cccccceeecCCCeeEEEec------CceEEEE
Confidence 566666655432211 133555554444433333321 12467889999999999874 3799999
Q ss_pred cCCCceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEe
Q 003878 165 IEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTH 244 (789)
Q Consensus 165 l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wsp 244 (789)
+.++...+.+-.+. . +.+. -+..|.+.++ +. . ....+.|||
T Consensus 70 ~~~~~~~~lT~dg~-~------~i~n--G~~dwvyeEE----------------------v~-------~-~~~~~~WSp 110 (353)
T PF00930_consen 70 LATGQETQLTTDGE-P------GIYN--GVPDWVYEEE----------------------VF-------D-RRSAVWWSP 110 (353)
T ss_dssp STTSEEEESES--T-T------TEEE--SB--HHHHHH----------------------TS-------S-SSBSEEE-T
T ss_pred CCCCCeEEeccccc-e------eEEc--Cccceecccc----------------------cc-------c-cccceEECC
Confidence 99986654332210 0 0000 0001111111 00 0 136899999
Q ss_pred CCcEEEEEEccCCCCC----CCCCCC-c----------c--ccCCcccEEEEEECCCCCCCcEEEEe-cCCCCeeEEEEE
Q 003878 245 DSKGFFYSRYPAPKEG----KDMDAG-T----------E--TDSNLYHEFYYHFLGTKQSEDILCWK-DPEHPKYIFSGH 306 (789)
Q Consensus 245 Dg~~i~y~~~~~~~~~----~~~~~~-~----------~--~~~~~~~~i~~~~lg~~~~~~~~~~~-~~~~~~~~~~~~ 306 (789)
||++|+|.+.++.... ...... . + -+.+-..+++++++.++....+.+-. ....+.++..+.
T Consensus 111 d~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~ 190 (353)
T PF00930_consen 111 DSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVG 190 (353)
T ss_dssp TSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEE
T ss_pred CCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccce
Confidence 9999999999876542 001110 0 0 01112234666777655433222210 113367788999
Q ss_pred EecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccc--eeEEEe-cCCCEEEEEECCCCCC
Q 003878 307 VTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA--QYEVIA-NDDTVFTFLTNKDAPK 383 (789)
Q Consensus 307 ~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~s-~dG~~l~~~tn~~~~~ 383 (789)
|++|++.+++...++......++++|.+++.+. ........++-. ....+. +++..+++++.++ +.
T Consensus 191 W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~----------~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~-G~ 259 (353)
T PF00930_consen 191 WSPDGKRLWVQWLNRDQNRLDLVLCDASTGETR----------VVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD-GY 259 (353)
T ss_dssp EEETTEEEEEEEEETTSTEEEEEEEEECTTTCE----------EEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT-SS
T ss_pred ecCCCcEEEEEEcccCCCEEEEEEEECCCCcee----------EEEEecCCcceeeecccccccCCCCEEEEEEEcC-CC
Confidence 999999888877777777788999999875321 001111112211 112233 7888888888865 47
Q ss_pred ceEEEEECCCCCCeEEeccCCCCceeeeEEEecC-CEEEEEEEeCC--eEEEEEEECC-CCceeeecccCCeeEEEeecc
Q 003878 384 YKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDV--KYVLQIRDLK-NGSLLHQLPIEIGSVNAISAR 459 (789)
Q Consensus 384 ~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g--~~~L~~~dl~-tG~~~~~l~~~~~~v~~~s~s 459 (789)
.+|++++.+++. .+.|+... .....-+.+..+ +.+++.+..+. ..+||.++++ +|+. +.|+...+....+++|
T Consensus 260 ~hly~~~~~~~~-~~~lT~G~-~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~-~~LT~~~~~~~~~~~S 336 (353)
T PF00930_consen 260 RHLYLYDLDGGK-PRQLTSGD-WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP-KCLTCEDGDHYSASFS 336 (353)
T ss_dssp EEEEEEETTSSE-EEESS-SS-S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE-EESSTTSSTTEEEEE-
T ss_pred cEEEEEcccccc-eeccccCc-eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe-EeccCCCCCceEEEEC
Confidence 899999998876 55555443 343344555553 67887777643 5699999998 6655 7887653322457889
Q ss_pred cCCcEEEEEEcCCCCCc
Q 003878 460 REDSVVFISFTSFLIPG 476 (789)
Q Consensus 460 ~d~~~l~~~~ss~~~P~ 476 (789)
|+++.++..++++.+|+
T Consensus 337 pdg~y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 337 PDGKYYVDTYSGPDTPP 353 (353)
T ss_dssp TTSSEEEEEEESSSSCE
T ss_pred CCCCEEEEEEcCCCCCC
Confidence 99999999999999885
No 57
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=5.6e-12 Score=142.02 Aligned_cols=199 Identities=15% Similarity=0.111 Sum_probs=125.3
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
..+++|||||+.|+|+.... ...+|+++++.++..+ .+...+. ....+.|||||++|++
T Consensus 206 v~~p~wSPDG~~la~~s~~~----------------~~~~i~i~dl~tg~~~--~l~~~~g---~~~~~~wSPDG~~La~ 264 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFEN----------------KKSQLVVHDLRSGARK--VVASFRG---HNGAPAFSPDGSRLAF 264 (429)
T ss_pred cccceEcCCCCEEEEEEecC----------------CCcEEEEEeCCCCceE--EEecCCC---ccCceeECCCCCEEEE
Confidence 47899999999999986532 2356999999765432 2222221 1236899999999999
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc-ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
...... ..+||++|++++. ...++.+.. ...+.|+|||+.|++.++++ +..+|+.++..++.
T Consensus 265 ~~~~~g--~~~Iy~~d~~~~~--------------~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~-g~~~I~~~~~~~~~ 327 (429)
T PRK01742 265 ASSKDG--VLNIYVMGANGGT--------------PSQLTSGAGNNTEPSWSPDGQSILFTSDRS-GSPQVYRMSASGGG 327 (429)
T ss_pred EEecCC--cEEEEEEECCCCC--------------eEeeccCCCCcCCEEECCCCCEEEEEECCC-CCceEEEEECCCCC
Confidence 765333 4679999997642 233333221 12356999999999998865 45799999987765
Q ss_pred CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCC
Q 003878 396 DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIP 475 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P 475 (789)
..++... . ....+++++..++....+ .++++|+.+|+. +.++.. .....++++||++.++++.. -..-
T Consensus 328 --~~~l~~~--~--~~~~~SpDG~~ia~~~~~---~i~~~Dl~~g~~-~~lt~~-~~~~~~~~sPdG~~i~~~s~-~g~~ 395 (429)
T PRK01742 328 --ASLVGGR--G--YSAQISADGKTLVMINGD---NVVKQDLTSGST-EVLSST-FLDESPSISPNGIMIIYSST-QGLG 395 (429)
T ss_pred --eEEecCC--C--CCccCCCCCCEEEEEcCC---CEEEEECCCCCe-EEecCC-CCCCCceECCCCCEEEEEEc-CCCc
Confidence 2333332 1 235567654433333333 578899987765 444322 12235678999998877653 2333
Q ss_pred cEEEEEECCC
Q 003878 476 GIVYQCNLKT 485 (789)
Q Consensus 476 ~~ly~~dl~t 485 (789)
..++.++...
T Consensus 396 ~~l~~~~~~G 405 (429)
T PRK01742 396 KVLQLVSADG 405 (429)
T ss_pred eEEEEEECCC
Confidence 4455555433
No 58
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=99.50 E-value=1.6e-12 Score=138.18 Aligned_cols=249 Identities=14% Similarity=0.102 Sum_probs=154.0
Q ss_pred EEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHh
Q 003878 509 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHK 588 (789)
Q Consensus 509 ~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~ 588 (789)
.+..+.+.|| .++.+....+.. .+..+||.+||..+... .|. .....|.++||.|+..|.||.|...+ ..
T Consensus 10 ~~~~~~~~d~-~~~~~~~~~~~~----~~~g~Vvl~HG~~Eh~~--ry~-~la~~l~~~G~~V~~~D~RGhG~S~r--~~ 79 (298)
T COG2267 10 TEGYFTGADG-TRLRYRTWAAPE----PPKGVVVLVHGLGEHSG--RYE-ELADDLAARGFDVYALDLRGHGRSPR--GQ 79 (298)
T ss_pred ccceeecCCC-ceEEEEeecCCC----CCCcEEEEecCchHHHH--HHH-HHHHHHHhCCCEEEEecCCCCCCCCC--CC
Confidence 4456778899 888887776653 23389999999754422 222 23455566999999999999987654 11
Q ss_pred cccccCCcchHHHHHHHHHHHHHcCC--CCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccc---cccc--
Q 003878 589 GGALAKKQNCFDDFISASEYLISAGY--TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR---YHKF-- 661 (789)
Q Consensus 589 ~~~~~~~~~~~~D~~~~~~~L~~~~~--~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~---~~~~-- 661 (789)
.+ ....|.|.+..++.+++.-. .-..+++++||||||++++.++.+++..+.++|+.+|++.+.. ....
T Consensus 80 rg----~~~~f~~~~~dl~~~~~~~~~~~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~l~~~~~~~~~~~ 155 (298)
T COG2267 80 RG----HVDSFADYVDDLDAFVETIAEPDPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALGLGGAILRLILAR 155 (298)
T ss_pred cC----CchhHHHHHHHHHHHHHHHhccCCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECccccCChhHHHHHHHH
Confidence 11 12236555555555554321 1236899999999999999999999999999999999988762 1100
Q ss_pred ---cCCccchhhc--------C-CC----CcHHHHHHHHhcCcccCCC------------CCC-CCCCCCCCCCCeEEEE
Q 003878 662 ---TIGHAWVSDF--------G-CS----EEEEEFYWLIKYSPLHNVR------------RPW-EQNPDKPFQYPSTLLL 712 (789)
Q Consensus 662 ---~~~~~~~~e~--------g-~p----~~~~~~~~l~~~sP~~~v~------------~~~-~~~~~~~~~~pp~Li~ 712 (789)
.....+...+ + .. .+++..+.+.+ +|+-... ... ...+.+.....|+|++
T Consensus 156 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~sr~~~~~~~~~~-dP~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~PvLll 234 (298)
T COG2267 156 LALKLLGRIRPKLPVDSNLLEGVLTDDLSRDPAEVAAYEA-DPLIGVGGPVSRWVDLALLAGRVPALRDAPAIALPVLLL 234 (298)
T ss_pred HhcccccccccccccCcccccCcCcchhhcCHHHHHHHhc-CCccccCCccHHHHHHHHHhhcccchhccccccCCEEEE
Confidence 0000000000 0 01 23333222222 2320000 000 0001122346799999
Q ss_pred ecCCCCCCC-cHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchh-hHHHHHHHHHHHHHHHhC
Q 003878 713 TADHDDRVV-PLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQ-KMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 713 ~g~~D~~V~-~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~-~~~~~~~~~~~fl~~~l~ 784 (789)
+|++|..|+ .+...++++++... ..++.+++++.|....... .+.+.++.+.+||.++++
T Consensus 235 ~g~~D~vv~~~~~~~~~~~~~~~~------------~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~~ 296 (298)
T COG2267 235 QGGDDRVVDNVEGLARFFERAGSP------------DKELKVIPGAYHELLNEPDRAREEVLKDILAWLAEALP 296 (298)
T ss_pred ecCCCccccCcHHHHHHHHhcCCC------------CceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhcc
Confidence 999999999 67777776665432 2689999999998654333 225778889999988765
No 59
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=99.48 E-value=1.8e-13 Score=144.51 Aligned_cols=213 Identities=17% Similarity=0.184 Sum_probs=135.7
Q ss_pred CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCcc---CC-CCCCHH----HHHHHHcCCeEEEEEeecCCCCCChhHHh
Q 003878 517 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNIS---VT-PSFSVS----RTILMRHLGAVFCIANIRGGGEYGEEWHK 588 (789)
Q Consensus 517 dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~---~~-~~~~~~----~~~~l~~~G~~v~~~~~RG~g~~g~~~~~ 588 (789)
|| ++|.+.+++| +....++.|+||..++-.... .. ....+. ...++. +||+|++.|.||.|..+..|..
T Consensus 1 DG-v~L~adv~~P-~~~~~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~-~GY~vV~~D~RG~g~S~G~~~~ 77 (272)
T PF02129_consen 1 DG-VRLAADVYRP-GADGGGPFPVILTRTPYGKGDQTASDLAGANPGPPSARRPFAE-RGYAVVVQDVRGTGGSEGEFDP 77 (272)
T ss_dssp TS--EEEEEEEEE---TTSSSEEEEEEEESSTCTC-HHHHHHTTCHHSHGGGHHHHH-TT-EEEEEE-TTSTTS-S-B-T
T ss_pred CC-CEEEEEEEec-CCCCCCcccEEEEccCcCCCCCcccchhhhhcccchhHHHHHh-CCCEEEEECCcccccCCCcccc
Confidence 79 9999999999 444578999999998843211 00 001110 011555 9999999999998876655543
Q ss_pred cccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccc--cccc----
Q 003878 589 GGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY--HKFT---- 662 (789)
Q Consensus 589 ~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~--~~~~---- 662 (789)
. ..+..+|..++++|+.++.+.+ .||+++|.|++|..+..+|.+.|...+|++..++..|+... ....
T Consensus 78 ~-----~~~e~~D~~d~I~W~~~Qpws~-G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~~~~~~gG~~~~ 151 (272)
T PF02129_consen 78 M-----SPNEAQDGYDTIEWIAAQPWSN-GKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYRDSIYPGGAFRL 151 (272)
T ss_dssp T-----SHHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCCTSSEETTEEBC
T ss_pred C-----ChhHHHHHHHHHHHHHhCCCCC-CeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccccchhcCCcccc
Confidence 2 5667899999999999997755 69999999999999999999888899999999999998762 1110
Q ss_pred -CCccch-----h-hcCC-C-CcHHH------------------------H----------HHHHhcCcccCCCCCCCCC
Q 003878 663 -IGHAWV-----S-DFGC-S-EEEEE------------------------F----------YWLIKYSPLHNVRRPWEQN 699 (789)
Q Consensus 663 -~~~~~~-----~-e~g~-p-~~~~~------------------------~----------~~l~~~sP~~~v~~~~~~~ 699 (789)
....|. . .... + ...+. . +++.+.++..++.++
T Consensus 152 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~i---- 227 (272)
T PF02129_consen 152 GFFAGWEDLQSQQEDPQSRPAPDRDYLRERARYEALGDSPLGRLPRDPPYWDEWLDHPPYDPFWQERSPSERLDKI---- 227 (272)
T ss_dssp CHHHHHHHHHHHHHHHTCCCCSSSHHHHHHHHHHCHHHHHHHHCHGGTHHHHHHHHT-SSSHHHHTTBHHHHHGG-----
T ss_pred cchhHHHHHHHHhhcccCCCchhhhhhhhhhhhhhhhhHHHhhhccccHHHHHHHhCCCcCHHHHhCChHHHHhhC----
Confidence 111230 0 0010 0 00000 0 111222222223333
Q ss_pred CCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCC-CcEEEEEeCCCCcC
Q 003878 700 PDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQT-NPIIGRIERKAGHG 760 (789)
Q Consensus 700 ~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~-~~~~l~~~~~~gH~ 760 (789)
..|+|+++|-.|..+. ..+.+.+++|++. + .+..|.+-| .+|+
T Consensus 228 ------~vP~l~v~Gw~D~~~~-~~~~~~~~~l~~~----------~~~~~~Liigp-w~H~ 271 (272)
T PF02129_consen 228 ------DVPVLIVGGWYDTLFL-RGALRAYEALRAP----------GSKPQRLIIGP-WTHG 271 (272)
T ss_dssp -------SEEEEEEETTCSSTS-HHHHHHHHHHCTT----------STC-EEEEEES-ESTT
T ss_pred ------CCCEEEecccCCcccc-hHHHHHHHHhhcC----------CCCCCEEEEeC-CCCC
Confidence 7899999999997777 8899999999876 5 567777754 4564
No 60
>PLN02511 hydrolase
Probab=99.48 E-value=1.4e-12 Score=144.49 Aligned_cols=243 Identities=14% Similarity=0.080 Sum_probs=142.5
Q ss_pred cEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhH
Q 003878 507 HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEW 586 (789)
Q Consensus 507 ~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~ 586 (789)
..++..+...|| ..+.+..+.+.........|+||++||..+.+...........++. +||.|+++|+||.|+....
T Consensus 70 ~~~re~l~~~DG-~~~~ldw~~~~~~~~~~~~p~vvllHG~~g~s~~~y~~~~~~~~~~-~g~~vv~~d~rG~G~s~~~- 146 (388)
T PLN02511 70 RYRRECLRTPDG-GAVALDWVSGDDRALPADAPVLILLPGLTGGSDDSYVRHMLLRARS-KGWRVVVFNSRGCADSPVT- 146 (388)
T ss_pred ceeEEEEECCCC-CEEEEEecCcccccCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHH-CCCEEEEEecCCCCCCCCC-
Confidence 334556677899 8887655433211122456999999998776543222222233444 9999999999998764211
Q ss_pred HhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCc--eeEEEecCCcccccc-c---cc
Q 003878 587 HKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDL--FGCALAHVGVMDMLR-Y---HK 660 (789)
Q Consensus 587 ~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~--f~a~v~~~p~~d~~~-~---~~ 660 (789)
..........+|+.+++++|..+ + ...++.++|+|+||.+++.++.++|+. +.++++.++..++.. . ..
T Consensus 147 ---~~~~~~~~~~~Dl~~~i~~l~~~-~-~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~~l~~~~~~~~~ 221 (388)
T PLN02511 147 ---TPQFYSASFTGDLRQVVDHVAGR-Y-PSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPFDLVIADEDFHK 221 (388)
T ss_pred ---CcCEEcCCchHHHHHHHHHHHHH-C-CCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCCcCHHHHHHHHhc
Confidence 01111234568999999999876 2 235899999999999999999999986 566665554444310 0 00
Q ss_pred ---------cc--C------Cccchh------------------hc----CCC----CcHHHHHHHHhcCcccCCCCCCC
Q 003878 661 ---------FT--I------GHAWVS------------------DF----GCS----EEEEEFYWLIKYSPLHNVRRPWE 697 (789)
Q Consensus 661 ---------~~--~------~~~~~~------------------e~----g~p----~~~~~~~~l~~~sP~~~v~~~~~ 697 (789)
+. . ...... +| ..+ ...+ +++...|+...+.++
T Consensus 222 ~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~t~~~~gf~~~~--~yy~~~s~~~~L~~I-- 297 (388)
T PLN02511 222 GFNNVYDKALAKALRKIFAKHALLFEGLGGEYNIPLVANAKTVRDFDDGLTRVSFGFKSVD--AYYSNSSSSDSIKHV-- 297 (388)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCHHHHHhCCCHHHHHHhhhhhcCCCCCHH--HHHHHcCchhhhccC--
Confidence 00 0 000000 00 000 0111 123344555566665
Q ss_pred CCCCCCCCCCeEEEEecCCCCCCCcHHH-HHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHH----HHH
Q 003878 698 QNPDKPFQYPSTLLLTADHDDRVVPLHS-LKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMI----DEA 772 (789)
Q Consensus 698 ~~~~~~~~~pp~Li~~g~~D~~V~~~~~-~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~----~~~ 772 (789)
..|+|+++|.+|+.+|+... .... .. ...+.+.+.+++||.......... =..
T Consensus 298 --------~vPtLiI~g~dDpi~p~~~~~~~~~----~~----------~p~~~l~~~~~gGH~~~~E~p~~~~~~~w~~ 355 (388)
T PLN02511 298 --------RVPLLCIQAANDPIAPARGIPREDI----KA----------NPNCLLIVTPSGGHLGWVAGPEAPFGAPWTD 355 (388)
T ss_pred --------CCCeEEEEcCCCCcCCcccCcHhHH----hc----------CCCEEEEECCCcceeccccCCCCCCCCccHH
Confidence 78999999999999987643 2221 11 234688999999997432221100 023
Q ss_pred HHHHHHHHHHh
Q 003878 773 ADRYGFMAKML 783 (789)
Q Consensus 773 ~~~~~fl~~~l 783 (789)
..+.+||....
T Consensus 356 ~~i~~Fl~~~~ 366 (388)
T PLN02511 356 PVVMEFLEALE 366 (388)
T ss_pred HHHHHHHHHHH
Confidence 46677887654
No 61
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.47 E-value=1.7e-12 Score=130.85 Aligned_cols=231 Identities=13% Similarity=0.125 Sum_probs=157.9
Q ss_pred CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccC--
Q 003878 517 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAK-- 594 (789)
Q Consensus 517 dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~-- 594 (789)
+| .+-+++++.|.+.. .+.|+||++||+.++.....-..-+..+.+..||.|+.|+ ++..+|+..+...+
T Consensus 43 ~g-~~r~y~l~vP~g~~--~~apLvv~LHG~~~sgag~~~~sg~d~lAd~~gFlV~yPd-----g~~~~wn~~~~~~~~~ 114 (312)
T COG3509 43 NG-LKRSYRLYVPPGLP--SGAPLVVVLHGSGGSGAGQLHGTGWDALADREGFLVAYPD-----GYDRAWNANGCGNWFG 114 (312)
T ss_pred CC-CccceEEEcCCCCC--CCCCEEEEEecCCCChHHhhcccchhhhhcccCcEEECcC-----ccccccCCCcccccCC
Confidence 56 78899999999863 4459999999998775544333345678888999999993 56667766555444
Q ss_pred ------CcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcc-ccc-ccccccCCcc
Q 003878 595 ------KQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM-DML-RYHKFTIGHA 666 (789)
Q Consensus 595 ------~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~-d~~-~~~~~~~~~~ 666 (789)
+..+...+.+.++.|+.+.-+||.||.|.|-|+||.|+.++++.+|++|+|+...++.. +-. ....-.. .
T Consensus 115 p~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~~~~~a~~~~rp~--~ 192 (312)
T COG3509 115 PADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLLALGVACTPPRPV--S 192 (312)
T ss_pred cccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeecccCCCcccCCCCch--h
Confidence 23456777888999999988999999999999999999999999999999998887765 211 1111000 0
Q ss_pred chhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCC-----
Q 003878 667 WVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLE----- 741 (789)
Q Consensus 667 ~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~----- 741 (789)
.+..-|.+ || .+|++- . .+| |-+|..|..|......+..+.+... ++..+
T Consensus 193 ~m~~~G~~-Dp--------~~p~~g---G----------~~~--~g~g~~~~~v~~~~~~~~Waa~ng~-~~~p~~~~~~ 247 (312)
T COG3509 193 VMAFHGTA-DP--------LNPYHG---G----------GVP--IGRGQRDGVVSAADLAARWAAVNGC-QAGPDTAELP 247 (312)
T ss_pred HHHhcCCC-CC--------CCCCCC---C----------Ccc--cccccccccccHHHHHHHHHHhcCC-CCCCcccccC
Confidence 01111222 11 123322 1 233 8899999988777777777776543 22111
Q ss_pred ---------CCCCCCcEEEEEeCCCCcCCCCchhh----------HHHHHHHHHHHHHHH
Q 003878 742 ---------NSPQTNPIIGRIERKAGHGVGLPTQK----------MIDEAADRYGFMAKM 782 (789)
Q Consensus 742 ---------~~~~~~~~~l~~~~~~gH~~~~~~~~----------~~~~~~~~~~fl~~~ 782 (789)
...++.+++++.+.+.||........ .++....+++|+..+
T Consensus 248 ~~~~~~~~~~~~~~~~V~~y~i~g~GH~wp~~~~~~~~~~g~~t~~~dat~~iw~Ff~~~ 307 (312)
T COG3509 248 DVGDGTDYDTCDGNARVELYTIDGGGHTWPGGTQYGPAALGMSTRGFDATERIWRFFRQH 307 (312)
T ss_pred CCcccceeeccCCCcceEEEEEeCCcccCcCCCCCCcccccccccCcchHHHHHHHHHhc
Confidence 23456789999999999986532221 245666788898765
No 62
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.47 E-value=1.1e-12 Score=136.36 Aligned_cols=206 Identities=14% Similarity=0.104 Sum_probs=126.1
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCC
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 615 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~ 615 (789)
.+.|+||++||..+... .|. .....+. +||.|+++|+||.|...... ....+++|....+..+++. .
T Consensus 11 ~~~~~iv~lhG~~~~~~--~~~-~~~~~l~-~~~~vi~~D~~G~G~S~~~~-------~~~~~~~~~~~~~~~~i~~--~ 77 (257)
T TIGR03611 11 ADAPVVVLSSGLGGSGS--YWA-PQLDVLT-QRFHVVTYDHRGTGRSPGEL-------PPGYSIAHMADDVLQLLDA--L 77 (257)
T ss_pred CCCCEEEEEcCCCcchh--HHH-HHHHHHH-hccEEEEEcCCCCCCCCCCC-------cccCCHHHHHHHHHHHHHH--h
Confidence 35689999999765432 232 2355666 79999999999987643221 1123455555555544443 3
Q ss_pred CCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccc-----------c-cc------------CCccchhhc
Q 003878 616 QSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH-----------K-FT------------IGHAWVSDF 671 (789)
Q Consensus 616 d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~-----------~-~~------------~~~~~~~e~ 671 (789)
+..++.++|+|+||.++..++.++|+.++++|...++....... . .. ....|....
T Consensus 78 ~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (257)
T TIGR03611 78 NIERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRCFDVRIALLQHAGPEAYVHAQALFLYPADWISEN 157 (257)
T ss_pred CCCcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCCCChhHHHHHHHHHHHHhccCcchhhhhhhhhhccccHhhcc
Confidence 45689999999999999999999999999999877654321100 0 00 000111100
Q ss_pred CC-----------C--CcHH---HHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHh
Q 003878 672 GC-----------S--EEEE---EFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYV 735 (789)
Q Consensus 672 g~-----------p--~~~~---~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~ 735 (789)
.. . .... ....+..++....+..+ ..|+|+++|++|..+|++++.++++.+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----------~~P~l~i~g~~D~~~~~~~~~~~~~~~~~- 226 (257)
T TIGR03611 158 AARLAADEAHALAHFPGKANVLRRINALEAFDVSARLDRI----------QHPVLLIANRDDMLVPYTQSLRLAAALPN- 226 (257)
T ss_pred chhhhhhhhhcccccCccHHHHHHHHHHHcCCcHHHhccc----------CccEEEEecCcCcccCHHHHHHHHHhcCC-
Confidence 00 0 0000 01112222222233333 68999999999999999998888776543
Q ss_pred hccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHH
Q 003878 736 LCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780 (789)
Q Consensus 736 ~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 780 (789)
..+..++++||....... .+....+.+||.
T Consensus 227 -------------~~~~~~~~~gH~~~~~~~--~~~~~~i~~fl~ 256 (257)
T TIGR03611 227 -------------AQLKLLPYGGHASNVTDP--ETFNRALLDFLK 256 (257)
T ss_pred -------------ceEEEECCCCCCccccCH--HHHHHHHHHHhc
Confidence 267778999999765433 345566777764
No 63
>PRK10985 putative hydrolase; Provisional
Probab=99.46 E-value=2.5e-12 Score=139.39 Aligned_cols=241 Identities=13% Similarity=0.069 Sum_probs=138.8
Q ss_pred EEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhc
Q 003878 510 QVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKG 589 (789)
Q Consensus 510 ~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~ 589 (789)
+..++..|| ..|......... ...+.|+||++||..+..... +.......|.++||.|+++|+||.|+.......
T Consensus 33 ~~~~~~~dg-~~~~l~w~~~~~--~~~~~p~vll~HG~~g~~~~~-~~~~~~~~l~~~G~~v~~~d~rG~g~~~~~~~~- 107 (324)
T PRK10985 33 WQRLELPDG-DFVDLAWSEDPA--QARHKPRLVLFHGLEGSFNSP-YAHGLLEAAQKRGWLGVVMHFRGCSGEPNRLHR- 107 (324)
T ss_pred eeEEECCCC-CEEEEecCCCCc--cCCCCCEEEEeCCCCCCCcCH-HHHHHHHHHHHCCCEEEEEeCCCCCCCccCCcc-
Confidence 334567798 777654332111 234579999999986654332 222234455569999999999997654221111
Q ss_pred ccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCc--eeEEEecCCccccccccc-ccCC--
Q 003878 590 GALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDL--FGCALAHVGVMDMLRYHK-FTIG-- 664 (789)
Q Consensus 590 ~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~--f~a~v~~~p~~d~~~~~~-~~~~-- 664 (789)
.......+|+.++++++.++. ...+++++|+|+||.+++.++.++++. +.++|+.++..++..... +...
T Consensus 108 ---~~~~~~~~D~~~~i~~l~~~~--~~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~~~~~~~~~~~~~ 182 (324)
T PRK10985 108 ---IYHSGETEDARFFLRWLQREF--GHVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLMLEACSYRMEQGFS 182 (324)
T ss_pred ---eECCCchHHHHHHHHHHHHhC--CCCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCCHHHHHHHHhhhHH
Confidence 111234689999999998762 235799999999999888877776543 677666666554321100 0000
Q ss_pred ----c-----------cchhhc-CC-CCcH------------------------HHHHHHHhcCcccCCCCCCCCCCCCC
Q 003878 665 ----H-----------AWVSDF-GC-SEEE------------------------EEFYWLIKYSPLHNVRRPWEQNPDKP 703 (789)
Q Consensus 665 ----~-----------~~~~e~-g~-p~~~------------------------~~~~~l~~~sP~~~v~~~~~~~~~~~ 703 (789)
. .....| +. +.++ ...+++...++...+.++
T Consensus 183 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~~~g~~~~~~~y~~~~~~~~l~~i-------- 254 (324)
T PRK10985 183 RVYQRYLLNLLKANAARKLAAYPGTLPINLAQLKSVRRLREFDDLITARIHGFADAIDYYRQCSALPLLNQI-------- 254 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCHHHHhcCCcHHHHhhhheeccCCCCCHHHHHHHCChHHHHhCC--------
Confidence 0 000000 00 0111 112233344444444444
Q ss_pred CCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCc----hhhHHHHHHHHHHHH
Q 003878 704 FQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLP----TQKMIDEAADRYGFM 779 (789)
Q Consensus 704 ~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~----~~~~~~~~~~~~~fl 779 (789)
..|+|+++|++|+.+++.....+. +. ...+.+.+.+++||...-. ....+ .-..+.+||
T Consensus 255 --~~P~lii~g~~D~~~~~~~~~~~~----~~----------~~~~~~~~~~~~GH~~~~~g~~~~~~~w-~~~~~~~~~ 317 (324)
T PRK10985 255 --RKPTLIIHAKDDPFMTHEVIPKPE----SL----------PPNVEYQLTEHGGHVGFVGGTLLKPQMW-LEQRIPDWL 317 (324)
T ss_pred --CCCEEEEecCCCCCCChhhChHHH----Hh----------CCCeEEEECCCCCceeeCCCCCCCCCcc-HHHHHHHHH
Confidence 679999999999999876554442 22 2236778889999963211 11111 123578888
Q ss_pred HHHhCC
Q 003878 780 AKMLGA 785 (789)
Q Consensus 780 ~~~l~~ 785 (789)
...++.
T Consensus 318 ~~~~~~ 323 (324)
T PRK10985 318 TTYLEA 323 (324)
T ss_pred HHhhcC
Confidence 776653
No 64
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.46 E-value=2.2e-11 Score=137.11 Aligned_cols=246 Identities=14% Similarity=0.116 Sum_probs=159.4
Q ss_pred CCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEee
Q 003878 140 SEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFS 219 (789)
Q Consensus 140 SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 219 (789)
...+.+++|....++....+|+++|..++.... +.... .
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~--l~~~~----------------------~----------------- 190 (417)
T TIGR02800 152 GAFSTRIAYVSKSGKSRRYELQVADYDGANPQT--ITRSR----------------------E----------------- 190 (417)
T ss_pred CCcCCEEEEEEEeCCCCcceEEEEcCCCCCCEE--eecCC----------------------C-----------------
Confidence 446788999877654668899999987654322 11110 0
Q ss_pred eccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCC
Q 003878 220 LVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHP 299 (789)
Q Consensus 220 s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~ 299 (789)
...+++|||||+.|+|+.... ...+|+++++.++... .+....
T Consensus 191 ----------------~~~~p~~Spdg~~la~~~~~~----------------~~~~i~v~d~~~g~~~--~~~~~~--- 233 (417)
T TIGR02800 191 ----------------PILSPAWSPDGQKLAYVSFES----------------GKPEIYVQDLATGQRE--KVASFP--- 233 (417)
T ss_pred ----------------ceecccCCCCCCEEEEEEcCC----------------CCcEEEEEECCCCCEE--EeecCC---
Confidence 136789999999999986432 2357999998765332 222221
Q ss_pred eeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc-ceeEEEecCCCEEEEEEC
Q 003878 300 KYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIANDDTVFTFLTN 378 (789)
Q Consensus 300 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~dG~~l~~~tn 378 (789)
.....+.|||||+.|++...... ..+||++++.++. ...+..... ...+.|++||+.|++.++
T Consensus 234 ~~~~~~~~spDg~~l~~~~~~~~--~~~i~~~d~~~~~--------------~~~l~~~~~~~~~~~~s~dg~~l~~~s~ 297 (417)
T TIGR02800 234 GMNGAPAFSPDGSKLAVSLSKDG--NPDIYVMDLDGKQ--------------LTRLTNGPGIDTEPSWSPDGKSIAFTSD 297 (417)
T ss_pred CCccceEECCCCCEEEEEECCCC--CccEEEEECCCCC--------------EEECCCCCCCCCCEEECCCCCEEEEEEC
Confidence 12235789999999998765433 4679999998742 122222111 123568999999999888
Q ss_pred CCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEee
Q 003878 379 KDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAIS 457 (789)
Q Consensus 379 ~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s 457 (789)
+. ...+|+.+++.+++ .+.+.... .....+.++++ +.+++.....+..+|++++++++.. +.++... ....++
T Consensus 298 ~~-g~~~iy~~d~~~~~-~~~l~~~~--~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~-~~~~p~ 371 (417)
T TIGR02800 298 RG-GSPQIYMMDADGGE-VRRLTFRG--GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDTG-LDESPS 371 (417)
T ss_pred CC-CCceEEEEECCCCC-EEEeecCC--CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCCC-CCCCce
Confidence 75 35689999998876 55565443 33456677775 4555555555567899999986654 4554332 223457
Q ss_pred cccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 458 ARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 458 ~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
+++|++.+++....-. ...++.++...+
T Consensus 372 ~spdg~~l~~~~~~~~-~~~l~~~~~~g~ 399 (417)
T TIGR02800 372 FAPNGRMILYATTRGG-RGVLGLVSTDGR 399 (417)
T ss_pred ECCCCCEEEEEEeCCC-cEEEEEEECCCc
Confidence 8899998888776433 356777765443
No 65
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.45 E-value=1.3e-11 Score=136.41 Aligned_cols=238 Identities=15% Similarity=0.151 Sum_probs=160.9
Q ss_pred cccccccceeeEEEeeeccc---cceeeeeeec-----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccc
Q 003878 204 LFLYLRGIFFFFYLFSLVKS---TIYSFWSVVS-----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTET 269 (789)
Q Consensus 204 ~~~~~~~~~~~~~~~~s~~~---g~~~l~~~~~-----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~ 269 (789)
.+..++|+|.++++|++..+ ..++||.++. ......++|+||++.|+|..+..
T Consensus 148 ~lt~~~g~~~~~i~~v~~~~~~~~~~~l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~------------- 214 (425)
T COG0823 148 KLTGIKGAFDTRIAYVAESDGGPLPYELALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFEL------------- 214 (425)
T ss_pred hhcCCcceecceEEEEeecccCCCCceEEEEccCCcceeEecccCcceeccccCcCCCceEEEEEec-------------
Confidence 46678999999999965542 3447777664 22235789999999999997653
Q ss_pred cCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCC
Q 003878 270 DSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGL 349 (789)
Q Consensus 270 ~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~ 349 (789)
..+.+++++++.++..+.++-+... ...++|||||++|+|...+.. ..+||++|+.++.
T Consensus 215 --~~~~~i~~~~l~~g~~~~i~~~~g~-----~~~P~fspDG~~l~f~~~rdg--~~~iy~~dl~~~~------------ 273 (425)
T COG0823 215 --GGCPRIYYLDLNTGKRPVILNFNGN-----NGAPAFSPDGSKLAFSSSRDG--SPDIYLMDLDGKN------------ 273 (425)
T ss_pred --CCCceEEEEeccCCccceeeccCCc-----cCCccCCCCCCEEEEEECCCC--CccEEEEcCCCCc------------
Confidence 2226799999998876654443322 236899999999999987654 6889999998742
Q ss_pred CccEeeeccccc-eeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecC-CEEEEEEEeC
Q 003878 350 LPFVKLIDGFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSD 427 (789)
Q Consensus 350 ~~~~~l~~~~~~-~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~ 427 (789)
..+++..... ..+.|+|||+.++|.+++. +.-+|+++++++.+ .+.++....... ...|+++ +++++.....
T Consensus 274 --~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~-G~p~I~~~~~~g~~-~~riT~~~~~~~--~p~~SpdG~~i~~~~~~~ 347 (425)
T COG0823 274 --LPRLTNGFGINTSPSWSPDGSKIVFTSDRG-GRPQIYLYDLEGSQ-VTRLTFSGGGNS--NPVWSPDGDKIVFESSSG 347 (425)
T ss_pred --ceecccCCccccCccCCCCCCEEEEEeCCC-CCcceEEECCCCCc-eeEeeccCCCCc--CccCCCCCCEEEEEeccC
Confidence 2234433222 2466999999999999986 46799999999876 466666554333 4455664 5666666555
Q ss_pred CeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEEC
Q 003878 428 VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNL 483 (789)
Q Consensus 428 g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl 483 (789)
|...+...++.++...+.++.. ......++.+++..+.++..+. .-+.++..+.
T Consensus 348 g~~~i~~~~~~~~~~~~~lt~~-~~~e~ps~~~ng~~i~~~s~~~-~~~~l~~~s~ 401 (425)
T COG0823 348 GQWDIDKNDLASGGKIRILTST-YLNESPSWAPNGRMIMFSSGQG-GGSVLSLVSL 401 (425)
T ss_pred CceeeEEeccCCCCcEEEcccc-ccCCCCCcCCCCceEEEeccCC-CCceEEEeec
Confidence 6567888888766533555433 2223456778888777765554 3344444443
No 66
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=99.44 E-value=2.8e-12 Score=137.84 Aligned_cols=237 Identities=14% Similarity=0.116 Sum_probs=139.0
Q ss_pred CCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCCh
Q 003878 505 EFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGE 584 (789)
Q Consensus 505 ~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~ 584 (789)
.+..+++.++-. | .+|++++..|++ +++.|+||++-|.-+.... .+. .+...+..+|++++.+|..|-|+..
T Consensus 162 ~~~i~~v~iP~e-g-~~I~g~LhlP~~---~~p~P~VIv~gGlDs~qeD-~~~-l~~~~l~~rGiA~LtvDmPG~G~s~- 233 (411)
T PF06500_consen 162 DYPIEEVEIPFE-G-KTIPGYLHLPSG---EKPYPTVIVCGGLDSLQED-LYR-LFRDYLAPRGIAMLTVDMPGQGESP- 233 (411)
T ss_dssp SSEEEEEEEEET-T-CEEEEEEEESSS---SS-EEEEEEE--TTS-GGG-GHH-HHHCCCHHCT-EEEEE--TTSGGGT-
T ss_pred CCCcEEEEEeeC-C-cEEEEEEEcCCC---CCCCCEEEEeCCcchhHHH-HHH-HHHHHHHhCCCEEEEEccCCCcccc-
Confidence 466788888864 5 799999999984 5789999988664433222 111 1223344599999999999987532
Q ss_pred hHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccc-ccccc--cc
Q 003878 585 EWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMD-MLRYH--KF 661 (789)
Q Consensus 585 ~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d-~~~~~--~~ 661 (789)
.|-. .+....=..++++||...+++|++||+++|.|+||+.+..+|..++++++|+|+..|+++ +..-. ..
T Consensus 234 ~~~l------~~D~~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~vh~~ft~~~~~~ 307 (411)
T PF06500_consen 234 KWPL------TQDSSRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAPVHHFFTDPEWQQ 307 (411)
T ss_dssp TT-S-------S-CCHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES---SCGGH-HHHHT
T ss_pred cCCC------CcCHHHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCchHhhhhccHHHHh
Confidence 2211 111112245789999999999999999999999999999999887889999999888644 32210 00
Q ss_pred cCCc----cchhhcCCC--CcHHHHHHHHhcCccc--CCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHH
Q 003878 662 TIGH----AWVSDFGCS--EEEEEFYWLIKYSPLH--NVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQ 733 (789)
Q Consensus 662 ~~~~----~~~~e~g~p--~~~~~~~~l~~~sP~~--~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~ 733 (789)
..+. .+...+|.. ++......+.+||-.. -+... .+.+|+|.+.+.+|+.+|.++..-++.
T Consensus 308 ~~P~my~d~LA~rlG~~~~~~~~l~~el~~~SLk~qGlL~~r--------r~~~plL~i~~~~D~v~P~eD~~lia~--- 376 (411)
T PF06500_consen 308 RVPDMYLDVLASRLGMAAVSDESLRGELNKFSLKTQGLLSGR--------RCPTPLLAINGEDDPVSPIEDSRLIAE--- 376 (411)
T ss_dssp TS-HHHHHHHHHHCT-SCE-HHHHHHHGGGGSTTTTTTTTSS---------BSS-EEEEEETT-SSS-HHHHHHHHH---
T ss_pred cCCHHHHHHHHHHhCCccCCHHHHHHHHHhcCcchhccccCC--------CCCcceEEeecCCCCCCCHHHHHHHHh---
Confidence 1111 112344543 2333334456666543 22111 257899999999999999888644432
Q ss_pred HhhccCCCCCCCCCcEEEEEeCCCC-cCCCCchhhHHHHHHHHHHHHHHHh
Q 003878 734 YVLCTSLENSPQTNPIIGRIERKAG-HGVGLPTQKMIDEAADRYGFMAKML 783 (789)
Q Consensus 734 ~~~~~~~~~~~~~~~~~l~~~~~~g-H~~~~~~~~~~~~~~~~~~fl~~~l 783 (789)
. +.+-+...++... |.. .-+.+..+..||.+.|
T Consensus 377 -~----------s~~gk~~~~~~~~~~~g------y~~al~~~~~Wl~~~l 410 (411)
T PF06500_consen 377 -S----------STDGKALRIPSKPLHMG------YPQALDEIYKWLEDKL 410 (411)
T ss_dssp -T----------BTT-EEEEE-SSSHHHH------HHHHHHHHHHHHHHHH
T ss_pred -c----------CCCCceeecCCCccccc------hHHHHHHHHHHHHHhc
Confidence 1 2222444444443 432 1355678899998876
No 67
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=99.43 E-value=7.5e-14 Score=147.00 Aligned_cols=144 Identities=17% Similarity=0.156 Sum_probs=90.4
Q ss_pred CCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccC----CCC--------C---CHHHHHHHHcCC
Q 003878 504 SEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISV----TPS--------F---SVSRTILMRHLG 568 (789)
Q Consensus 504 ~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~----~~~--------~---~~~~~~~l~~~G 568 (789)
+.|..|++.|...++ ..+|++++.|++. .++.|.||++||-.+... .+. . .......|+++|
T Consensus 84 dGY~~EKv~f~~~p~-~~vpaylLvPd~~--~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~G 160 (390)
T PF12715_consen 84 DGYTREKVEFNTTPG-SRVPAYLLVPDGA--KGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKRG 160 (390)
T ss_dssp TTEEEEEEEE--STT-B-EEEEEEEETT----S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTTT
T ss_pred CCeEEEEEEEEccCC-eeEEEEEEecCCC--CCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhCC
Confidence 468889999999999 9999999999986 589999999998422110 000 1 111234456699
Q ss_pred eEEEEEeecCCCCCChhHHh-----------------cccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHH
Q 003878 569 AVFCIANIRGGGEYGEEWHK-----------------GGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLL 631 (789)
Q Consensus 569 ~~v~~~~~RG~g~~g~~~~~-----------------~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l 631 (789)
|+|+++|.+|-||.+..-+. .|....+...+ |-+.+++||.++..+|++||+++|+|+||+.
T Consensus 161 YVvla~D~~g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~-ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~ 239 (390)
T PF12715_consen 161 YVVLAPDALGFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAW-DDMRALDFLASLPEVDPDRIGCMGFSMGGYR 239 (390)
T ss_dssp SEEEEE--TTSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHH-HHHHHHHHHCT-TTEEEEEEEEEEEGGGHHH
T ss_pred CEEEEEccccccccccccccccccchhHHHHHHHHHHcCcCHHHHHHH-HHHHHHHHHhcCcccCccceEEEeecccHHH
Confidence 99999999998876542111 11111122233 4556999999999999999999999999999
Q ss_pred HHHHHHhCCCceeEEEecCCc
Q 003878 632 VGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 632 ~~~~~~~~pd~f~a~v~~~p~ 652 (789)
+.++++.. |+++|+|+..-+
T Consensus 240 a~~LaALD-dRIka~v~~~~l 259 (390)
T PF12715_consen 240 AWWLAALD-DRIKATVANGYL 259 (390)
T ss_dssp HHHHHHH--TT--EEEEES-B
T ss_pred HHHHHHcc-hhhHhHhhhhhh
Confidence 99999995 567777665443
No 68
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=99.43 E-value=5.3e-12 Score=137.04 Aligned_cols=235 Identities=11% Similarity=0.042 Sum_probs=137.7
Q ss_pred EecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCC--------------------C---CCHHHHHHHHcCCe
Q 003878 513 VPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTP--------------------S---FSVSRTILMRHLGA 569 (789)
Q Consensus 513 ~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~--------------------~---~~~~~~~~l~~~G~ 569 (789)
+.+.|| .+|....+.|+ .+..+|+++||-.+..... . |...+...|.++||
T Consensus 2 ~~~~~g-~~l~~~~~~~~-----~~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~~G~ 75 (332)
T TIGR01607 2 FRNKDG-LLLKTYSWIVK-----NAIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNKNGY 75 (332)
T ss_pred ccCCCC-CeEEEeeeecc-----CCeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHHCCC
Confidence 567799 99988877765 2456999999954443211 1 22345666766999
Q ss_pred EEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHc------------------CCCCCCcEEEEeeChHHHH
Q 003878 570 VFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISA------------------GYTQSRKLCIEGGSNGGLL 631 (789)
Q Consensus 570 ~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~------------------~~~d~~~i~i~G~S~GG~l 631 (789)
.|+.+|.||.|.....-...+....-..-.+|+.+.++.+.+. .+-....++++||||||++
T Consensus 76 ~V~~~D~rGHG~S~~~~~~~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg~i 155 (332)
T TIGR01607 76 SVYGLDLQGHGESDGLQNLRGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGGNI 155 (332)
T ss_pred cEEEecccccCCCccccccccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCccHH
Confidence 9999999998753321000111011111234555555554431 1111247999999999999
Q ss_pred HHHHHHhCCC--------ceeEEEecCCcccccccc----------------------c-ccCCc-cchhhcCCCCcHHH
Q 003878 632 VGACINQRPD--------LFGCALAHVGVMDMLRYH----------------------K-FTIGH-AWVSDFGCSEEEEE 679 (789)
Q Consensus 632 ~~~~~~~~pd--------~f~a~v~~~p~~d~~~~~----------------------~-~~~~~-~~~~e~g~p~~~~~ 679 (789)
+..++.+.++ .++++|+.+|.+.+.... + +..+. .+.. .++..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~i~g~i~~s~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~-----~~~~~ 230 (332)
T TIGR01607 156 ALRLLELLGKSNENNDKLNIKGCISLSGMISIKSVGSDDSFKFKYFYLPVMNFMSRVFPTFRISKKIRYE-----KSPYV 230 (332)
T ss_pred HHHHHHHhccccccccccccceEEEeccceEEecccCCCcchhhhhHHHHHHHHHHHCCcccccCccccc-----cChhh
Confidence 9988765442 588888888765432100 0 00000 0000 11111
Q ss_pred HHHHHhcCccc----------------------CCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhc
Q 003878 680 FYWLIKYSPLH----------------------NVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLC 737 (789)
Q Consensus 680 ~~~l~~~sP~~----------------------~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~ 737 (789)
.+. ...+|+. .+..+ ....|+|+++|.+|..|++..+.++++++..
T Consensus 231 ~~~-~~~Dp~~~~~~~s~~~~~~l~~~~~~~~~~~~~i--------~~~~P~Lii~G~~D~vv~~~~~~~~~~~~~~--- 298 (332)
T TIGR01607 231 NDI-IKFDKFRYDGGITFNLASELIKATDTLDCDIDYI--------PKDIPILFIHSKGDCVCSYEGTVSFYNKLSI--- 298 (332)
T ss_pred hhH-HhcCccccCCcccHHHHHHHHHHHHHHHhhHhhC--------CCCCCEEEEEeCCCCccCHHHHHHHHHhccC---
Confidence 110 1111211 11111 1146999999999999999998887776542
Q ss_pred cCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHH
Q 003878 738 TSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780 (789)
Q Consensus 738 ~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 780 (789)
....+.++++++|....... ..+..+.+.+||.
T Consensus 299 ---------~~~~l~~~~g~~H~i~~E~~-~~~v~~~i~~wL~ 331 (332)
T TIGR01607 299 ---------SNKELHTLEDMDHVITIEPG-NEEVLKKIIEWIS 331 (332)
T ss_pred ---------CCcEEEEECCCCCCCccCCC-HHHHHHHHHHHhh
Confidence 23578889999999876543 2466778888874
No 69
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.42 E-value=5.2e-11 Score=130.60 Aligned_cols=262 Identities=17% Similarity=0.168 Sum_probs=158.4
Q ss_pred CCCCcEEEEEEecC----CceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccceeeE
Q 003878 140 SEDAKYLAYALSYS----GSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFF 215 (789)
Q Consensus 140 SpDg~~la~~~~~~----g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 215 (789)
||||+++++..+.. -+-..+++|+|+++++..+......
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~------------------------------------- 43 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPP------------------------------------- 43 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EET-------------------------------------
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCcc-------------------------------------
Confidence 89999999977532 2446789999999997665332211
Q ss_pred EEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEec
Q 003878 216 YLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKD 295 (789)
Q Consensus 216 ~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~ 295 (789)
....+.|||||+.|+|++.. .||+.++.++.. ..+...+
T Consensus 44 --------------------~~~~~~~sP~g~~~~~v~~~--------------------nly~~~~~~~~~-~~lT~dg 82 (353)
T PF00930_consen 44 --------------------KLQDAKWSPDGKYIAFVRDN--------------------NLYLRDLATGQE-TQLTTDG 82 (353)
T ss_dssp --------------------TBSEEEE-SSSTEEEEEETT--------------------EEEEESSTTSEE-EESES--
T ss_pred --------------------ccccceeecCCCeeEEEecC--------------------ceEEEECCCCCe-EEecccc
Confidence 24789999999999999753 377776655421 1111111
Q ss_pred --------CC-----C-CeeEEEEEEecCCcEEEEEEEcCCC-------------------------------CceEEEE
Q 003878 296 --------PE-----H-PKYIFSGHVTEDGQYLVMCIEENCD-------------------------------PVNKVYY 330 (789)
Q Consensus 296 --------~~-----~-~~~~~~~~~SpDG~~l~~~~~~~~~-------------------------------~~~~i~~ 330 (789)
++ + -....++.|||||++|++...+... ...++++
T Consensus 83 ~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v 162 (353)
T PF00930_consen 83 EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFV 162 (353)
T ss_dssp TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEE
T ss_pred ceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEE
Confidence 10 0 0001356799999999997755421 1234566
Q ss_pred EECCCCCCCcccccccCCCCccEeeec--ccccee---EEEecCCCE-EEEEECCCCCCceEEEEECCCCCCeEEeccCC
Q 003878 331 CDLSALPEGLEGFKKRDGLLPFVKLID--GFDAQY---EVIANDDTV-FTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEA 404 (789)
Q Consensus 331 ~d~~~g~~~~~~~~~~~~~~~~~~l~~--~~~~~~---~~~s~dG~~-l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~ 404 (789)
+++++++.. ...... .....+ ..|+++++. ++...|+......|+.+|..++. .+.+..+.
T Consensus 163 ~~~~~~~~~------------~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~-~~~~~~e~ 229 (353)
T PF00930_consen 163 VDLASGKTT------------ELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGE-TRVVLEET 229 (353)
T ss_dssp EESSSTCCC------------EE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTT-CEEEEEEE
T ss_pred EECCCCcEE------------EeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCc-eeEEEEec
Confidence 666554210 111110 001111 348999884 44557787788899999998765 33333332
Q ss_pred CCcee---eeEEEe--cCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEE-EeecccCCcEEEEEEcCCC-CCcE
Q 003878 405 ERDVL---ESATAV--NLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVN-AISARREDSVVFISFTSFL-IPGI 477 (789)
Q Consensus 405 ~~~~i---~~v~~~--~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~-~~s~s~d~~~l~~~~ss~~-~P~~ 477 (789)
....+ ..+.+. +++.++.....+|..+|++++.+++. .+.|+.....|. .+.++.+++.++|..+... .-..
T Consensus 230 ~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~ 308 (353)
T PF00930_consen 230 SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERH 308 (353)
T ss_dssp SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBE
T ss_pred CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceE
Confidence 22222 234443 34677777779999999999998555 478887777774 4567888899998876522 3448
Q ss_pred EEEEECC-CCCceEEEeee
Q 003878 478 VYQCNLK-TETPEMKIFRE 495 (789)
Q Consensus 478 ly~~dl~-tg~~~~~~l~~ 495 (789)
+|+.+++ ++ ..+.|+.
T Consensus 309 lY~v~~~~~~--~~~~LT~ 325 (353)
T PF00930_consen 309 LYRVSLDSGG--EPKCLTC 325 (353)
T ss_dssp EEEEETTETT--EEEESST
T ss_pred EEEEEeCCCC--CeEeccC
Confidence 8888988 66 4666664
No 70
>PRK00870 haloalkane dehalogenase; Provisional
Probab=99.40 E-value=2.2e-11 Score=130.84 Aligned_cols=129 Identities=16% Similarity=0.155 Sum_probs=85.7
Q ss_pred cEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhH
Q 003878 507 HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEW 586 (789)
Q Consensus 507 ~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~ 586 (789)
..+.+.+...+| .++.+.+. ..+ +...|.||++||.++... .|.. ....|.++||.|+++|.||.|.....
T Consensus 20 ~~~~~~~~~~~~-~~~~i~y~-~~G---~~~~~~lvliHG~~~~~~--~w~~-~~~~L~~~gy~vi~~Dl~G~G~S~~~- 90 (302)
T PRK00870 20 APHYVDVDDGDG-GPLRMHYV-DEG---PADGPPVLLLHGEPSWSY--LYRK-MIPILAAAGHRVIAPDLIGFGRSDKP- 90 (302)
T ss_pred CceeEeecCCCC-ceEEEEEE-ecC---CCCCCEEEEECCCCCchh--hHHH-HHHHHHhCCCEEEEECCCCCCCCCCC-
Confidence 445566776677 66554433 222 113578999999754322 3443 34456557999999999998753211
Q ss_pred HhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCC
Q 003878 587 HKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 651 (789)
Q Consensus 587 ~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p 651 (789)
......++++..+.+..++++ .+.+++.++|||+||.++..++.++|++++++|+..+
T Consensus 91 -----~~~~~~~~~~~a~~l~~~l~~--l~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 148 (302)
T PRK00870 91 -----TRREDYTYARHVEWMRSWFEQ--LDLTDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANT 148 (302)
T ss_pred -----CCcccCCHHHHHHHHHHHHHH--cCCCCEEEEEEChHHHHHHHHHHhChhheeEEEEeCC
Confidence 011123566666655555554 2345899999999999999999999999999998765
No 71
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=99.39 E-value=3.7e-12 Score=135.11 Aligned_cols=208 Identities=15% Similarity=0.026 Sum_probs=118.7
Q ss_pred CccEEEEEcCCCCccCCCC-CCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCC
Q 003878 537 SHPCLLYGYGGFNISVTPS-FSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 615 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~~~~-~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~ 615 (789)
..|.||++||.......+. +...+..+++ .||.|+++|+||.|......... .......+|+.+.++. .
T Consensus 29 ~~~~ivllHG~~~~~~~~~~~~~~~~~l~~-~~~~vi~~D~~G~G~S~~~~~~~---~~~~~~~~~l~~~l~~------l 98 (282)
T TIGR03343 29 NGEAVIMLHGGGPGAGGWSNYYRNIGPFVD-AGYRVILKDSPGFNKSDAVVMDE---QRGLVNARAVKGLMDA------L 98 (282)
T ss_pred CCCeEEEECCCCCchhhHHHHHHHHHHHHh-CCCEEEEECCCCCCCCCCCcCcc---cccchhHHHHHHHHHH------c
Confidence 3467999999654332221 1122334445 79999999999987643211000 0000112344433333 2
Q ss_pred CCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccc---cc----------ccCC--cc---chhhc-CCC--
Q 003878 616 QSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY---HK----------FTIG--HA---WVSDF-GCS-- 674 (789)
Q Consensus 616 d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~---~~----------~~~~--~~---~~~e~-g~p-- 674 (789)
+.+++.++|+|+||.++..++.++|++++++|+..|....... .. .... .. +...+ -++
T Consensus 99 ~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (282)
T TIGR03343 99 DIEKAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSLFAPMPMEGIKLLFKLYAEPSYETLKQMLNVFLFDQSL 178 (282)
T ss_pred CCCCeeEEEECchHHHHHHHHHhChHhhceEEEECCCCCCccccccCchHHHHHHHHHhcCCCHHHHHHHHhhCccCccc
Confidence 4569999999999999999999999999999987764210000 00 0000 00 00000 000
Q ss_pred Cc--------------HHHH-HHHHh--cCcc------cCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHH
Q 003878 675 EE--------------EEEF-YWLIK--YSPL------HNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLAT 731 (789)
Q Consensus 675 ~~--------------~~~~-~~l~~--~sP~------~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~ 731 (789)
.. ++.. ..+.. ..++ ..+.+ ...|+|+++|++|..|++..+.++.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------i~~Pvlli~G~~D~~v~~~~~~~~~~~ 248 (282)
T TIGR03343 179 ITEELLQGRWENIQRQPEHLKNFLISSQKAPLSTWDVTARLGE----------IKAKTLVTWGRDDRFVPLDHGLKLLWN 248 (282)
T ss_pred CcHHHHHhHHHHhhcCHHHHHHHHHhccccccccchHHHHHhh----------CCCCEEEEEccCCCcCCchhHHHHHHh
Confidence 00 1110 00110 0111 11222 267999999999999999988888776
Q ss_pred HHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHH
Q 003878 732 MQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780 (789)
Q Consensus 732 L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 780 (789)
+.. +++.+++++||....... ....+.+.+||.
T Consensus 249 ~~~--------------~~~~~i~~agH~~~~e~p--~~~~~~i~~fl~ 281 (282)
T TIGR03343 249 MPD--------------AQLHVFSRCGHWAQWEHA--DAFNRLVIDFLR 281 (282)
T ss_pred CCC--------------CEEEEeCCCCcCCcccCH--HHHHHHHHHHhh
Confidence 653 377889999999765444 245567778874
No 72
>PLN00021 chlorophyllase
Probab=99.39 E-value=3.7e-11 Score=128.28 Aligned_cols=207 Identities=14% Similarity=0.108 Sum_probs=132.4
Q ss_pred eEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchH
Q 003878 520 TKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCF 599 (789)
Q Consensus 520 ~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~ 599 (789)
..+|+.+++|.. .++.|+||++||..+.. ..|. .....|+++||+|+++|++|.+.. .....+
T Consensus 37 ~~~p~~v~~P~~---~g~~PvVv~lHG~~~~~--~~y~-~l~~~Las~G~~VvapD~~g~~~~-----------~~~~~i 99 (313)
T PLN00021 37 PPKPLLVATPSE---AGTYPVLLFLHGYLLYN--SFYS-QLLQHIASHGFIVVAPQLYTLAGP-----------DGTDEI 99 (313)
T ss_pred CCceEEEEeCCC---CCCCCEEEEECCCCCCc--ccHH-HHHHHHHhCCCEEEEecCCCcCCC-----------CchhhH
Confidence 679999999975 47899999999976532 2233 344556669999999998873210 112345
Q ss_pred HHHHHHHHHHHHc--------CCCCCCcEEEEeeChHHHHHHHHHHhCCC-----ceeEEEecCCcccccccccccCCcc
Q 003878 600 DDFISASEYLISA--------GYTQSRKLCIEGGSNGGLLVGACINQRPD-----LFGCALAHVGVMDMLRYHKFTIGHA 666 (789)
Q Consensus 600 ~D~~~~~~~L~~~--------~~~d~~~i~i~G~S~GG~l~~~~~~~~pd-----~f~a~v~~~p~~d~~~~~~~~~~~~ 666 (789)
+|..++++|+.+. ...|+++++++|||+||.++..++..+|+ .|+++|...|+..+....
T Consensus 100 ~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g~~~~~------- 172 (313)
T PLN00021 100 KDAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDGTSKGK------- 172 (313)
T ss_pred HHHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeecccccccccc-------
Confidence 6677777777652 23677999999999999999999998875 578888888865432110
Q ss_pred chhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCC-----CCC----cHH-HHHHHHHHHHhh
Q 003878 667 WVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDD-----RVV----PLH-SLKLLATMQYVL 736 (789)
Q Consensus 667 ~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~-----~V~----~~~-~~~~~~~L~~~~ 736 (789)
...+.. ..+.|- .-.. ..|+|++++..|. .+| ... -.+|+++.
T Consensus 173 -------~~~p~i----l~~~~~--s~~~----------~~P~liig~g~~~~~~~~~~p~~ap~~~~~~~f~~~~---- 225 (313)
T PLN00021 173 -------QTPPPV----LTYAPH--SFNL----------DIPVLVIGTGLGGEPRNPLFPPCAPDGVNHAEFFNEC---- 225 (313)
T ss_pred -------CCCCcc----cccCcc--cccC----------CCCeEEEecCCCcccccccccccCCCCCCHHHHHHhc----
Confidence 001100 111111 1112 4689999888663 222 322 36666554
Q ss_pred ccCCCCCCCCCcEEEEEeCCCCcCCC-Cch--------------------hhHHHHHHHHHHHHHHHhCCC
Q 003878 737 CTSLENSPQTNPIIGRIERKAGHGVG-LPT--------------------QKMIDEAADRYGFMAKMLGAS 786 (789)
Q Consensus 737 ~~~~~~~~~~~~~~l~~~~~~gH~~~-~~~--------------------~~~~~~~~~~~~fl~~~l~~~ 786 (789)
+.|..+.+.+++||... .+. ..+......+.+||..+|..+
T Consensus 226 ---------~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~~c~~g~~~~~~r~~~~g~~~aFl~~~l~~~ 287 (313)
T PLN00021 226 ---------KAPAVHFVAKDYGHMDMLDDDTSGIRGKITGCMCKNGKPRKPMRRFVGGAVVAFLKAYLEGD 287 (313)
T ss_pred ---------CCCeeeeeecCCCcceeecCCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhcCc
Confidence 44678888889999632 111 112233456899999998654
No 73
>COG4099 Predicted peptidase [General function prediction only]
Probab=99.38 E-value=2.9e-12 Score=127.88 Aligned_cols=173 Identities=16% Similarity=0.136 Sum_probs=120.2
Q ss_pred CCceEEEEEEEecCCCCCCCCc-cEEEEEcCCCCccCCCCCCHHHHHHHHcCC----------eEEEEEeecCCCCCChh
Q 003878 517 DGSTKIPMFIVSKKNIKLDGSH-PCLLYGYGGFNISVTPSFSVSRTILMRHLG----------AVFCIANIRGGGEYGEE 585 (789)
Q Consensus 517 dg~~~i~~~l~~p~~~~~~~~~-P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G----------~~v~~~~~RG~g~~g~~ 585 (789)
-| .++++.+|.|++..+++++ |++|+.||+....... ...+...+| +-|++|.| ..-
T Consensus 170 tg-neLkYrly~Pkdy~pdkky~PLvlfLHgagq~g~dn-----~~~l~sg~gaiawa~pedqcfVlAPQy------~~i 237 (387)
T COG4099 170 TG-NELKYRLYTPKDYAPDKKYYPLVLFLHGAGQGGSDN-----DKVLSSGIGAIAWAGPEDQCFVLAPQY------NPI 237 (387)
T ss_pred cC-ceeeEEEecccccCCCCccccEEEEEecCCCCCchh-----hhhhhcCccceeeecccCceEEEcccc------ccc
Confidence 46 7999999999999999998 9999999986543321 123333233 23333331 111
Q ss_pred HHhcccccCCcchHHHHHHHHH-HHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCC
Q 003878 586 WHKGGALAKKQNCFDDFISASE-YLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG 664 (789)
Q Consensus 586 ~~~~~~~~~~~~~~~D~~~~~~-~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~ 664 (789)
+... .....+...-.++.++ -|.++.-+|.+||.++|.|.||+.+.+++-++||.|+|++..+|=-|
T Consensus 238 f~d~--e~~t~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d---------- 305 (387)
T COG4099 238 FADS--EEKTLLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGD---------- 305 (387)
T ss_pred cccc--ccccchhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCc----------
Confidence 1111 1111222334455555 56677779999999999999999999999999999999998877211
Q ss_pred ccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCC
Q 003878 665 HAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSP 744 (789)
Q Consensus 665 ~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~ 744 (789)
. + ..++.. ...|+.++|+.+|..+|.+.++-++++|+..
T Consensus 306 -----------~-----------v-~lv~~l---------k~~piWvfhs~dDkv~Pv~nSrv~y~~lk~~--------- 344 (387)
T COG4099 306 -----------R-----------V-YLVRTL---------KKAPIWVFHSSDDKVIPVSNSRVLYERLKAL--------- 344 (387)
T ss_pred -----------h-----------h-hhhhhh---------ccCceEEEEecCCCccccCcceeehHHHHhh---------
Confidence 0 0 112222 3579999999999999999999999999988
Q ss_pred CCCcEEEEEeC
Q 003878 745 QTNPIIGRIER 755 (789)
Q Consensus 745 ~~~~~~l~~~~ 755 (789)
++++.+..+.
T Consensus 345 -~~kv~Ytaf~ 354 (387)
T COG4099 345 -DRKVNYTAFL 354 (387)
T ss_pred -ccccchhhhh
Confidence 7777666554
No 74
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=99.38 E-value=5.5e-12 Score=119.39 Aligned_cols=145 Identities=14% Similarity=0.162 Sum_probs=103.7
Q ss_pred EEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCc
Q 003878 540 CLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRK 619 (789)
Q Consensus 540 ~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~ 619 (789)
+||++||..+.. ..|.. +...++++||.++.+|+|+.+.... ..+..++++++... ..++++
T Consensus 1 ~vv~~HG~~~~~--~~~~~-~~~~l~~~G~~v~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~-~~~~~~ 62 (145)
T PF12695_consen 1 VVVLLHGWGGSR--RDYQP-LAEALAEQGYAVVAFDYPGHGDSDG--------------ADAVERVLADIRAG-YPDPDR 62 (145)
T ss_dssp EEEEECTTTTTT--HHHHH-HHHHHHHTTEEEEEESCTTSTTSHH--------------SHHHHHHHHHHHHH-HCTCCE
T ss_pred CEEEECCCCCCH--HHHHH-HHHHHHHCCCEEEEEecCCCCccch--------------hHHHHHHHHHHHhh-cCCCCc
Confidence 589999986642 23443 3444555899999999998776411 11444444444332 228899
Q ss_pred EEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCC
Q 003878 620 LCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQN 699 (789)
Q Consensus 620 i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~ 699 (789)
|+++|+|+||.++..++.+. ..++++|+..|+ |. .+.. ..
T Consensus 63 i~l~G~S~Gg~~a~~~~~~~-~~v~~~v~~~~~---------------------~~-~~~~------------~~----- 102 (145)
T PF12695_consen 63 IILIGHSMGGAIAANLAARN-PRVKAVVLLSPY---------------------PD-SEDL------------AK----- 102 (145)
T ss_dssp EEEEEETHHHHHHHHHHHHS-TTESEEEEESES---------------------SG-CHHH------------TT-----
T ss_pred EEEEEEccCcHHHHHHhhhc-cceeEEEEecCc---------------------cc-hhhh------------hc-----
Confidence 99999999999999999987 689999998882 11 0111 11
Q ss_pred CCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcC
Q 003878 700 PDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHG 760 (789)
Q Consensus 700 ~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~ 760 (789)
...|+|+++|++|..+++++..+++++++ .+.+++++++++|+
T Consensus 103 -----~~~pv~~i~g~~D~~~~~~~~~~~~~~~~-------------~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 103 -----IRIPVLFIHGENDPLVPPEQVRRLYEALP-------------GPKELYIIPGAGHF 145 (145)
T ss_dssp -----TTSEEEEEEETT-SSSHHHHHHHHHHHHC-------------SSEEEEEETTS-TT
T ss_pred -----cCCcEEEEEECCCCcCCHHHHHHHHHHcC-------------CCcEEEEeCCCcCc
Confidence 25699999999999999999999888875 35689999999995
No 75
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.38 E-value=1.3e-10 Score=119.24 Aligned_cols=276 Identities=17% Similarity=0.131 Sum_probs=168.2
Q ss_pred eEEeccCCCCC-----CCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeee
Q 003878 118 KVLLDPNTLSD-----DGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHL 192 (789)
Q Consensus 118 ~~l~d~~~~~~-----~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~ 192 (789)
.-|-|+++-.. ++..-+-.++|||||++|| +|.-..+|.+||.++|+.+-.++.+.. -..-+|
T Consensus 139 vR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iA-----SG~~dg~I~lwdpktg~~~g~~l~gH~-------K~It~L 206 (480)
T KOG0271|consen 139 VRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIA-----SGSKDGSIRLWDPKTGQQIGRALRGHK-------KWITAL 206 (480)
T ss_pred EEeeccCCCCcceeecCCccEEEEEEECCCcchhh-----ccccCCeEEEecCCCCCcccccccCcc-------cceeEE
Confidence 45678877653 3444578899999999999 677788999999999976655544321 112223
Q ss_pred eeccccc-cccccccccccceeeEEEeeeccccceeeeeeec--------cc--ccceEEEEeCCcEEEEEEccCCCCCC
Q 003878 193 TISLLNV-PTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVS--------QF--KFSSIAWTHDSKGFFYSRYPAPKEGK 261 (789)
Q Consensus 193 ~~~~~~~-p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~--------~~--~~~~~~wspDg~~i~y~~~~~~~~~~ 261 (789)
.-.|... |+. +.+.+|..+|+-.||.+.. .. .+.-+.| .|..++|+..
T Consensus 207 awep~hl~p~~------------r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrw--GG~gliySgS------- 265 (480)
T KOG0271|consen 207 AWEPLHLVPPC------------RRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRW--GGEGLIYSGS------- 265 (480)
T ss_pred eecccccCCCc------------cceecccCCCCEEEEEccCceEEEEeccCccceEEEEE--cCCceEEecC-------
Confidence 3334433 443 4688999999999999876 11 1245678 4677888732
Q ss_pred CCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEE-----------EecCCcE-----------------
Q 003878 262 DMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGH-----------VTEDGQY----------------- 313 (789)
Q Consensus 262 ~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~-----------~SpDG~~----------------- 313 (789)
...+|..|+...+. ++-+...+..++..++ +.|-|++
T Consensus 266 -----------~DrtIkvw~a~dG~----~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~ 330 (480)
T KOG0271|consen 266 -----------QDRTIKVWRALDGK----LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEA 330 (480)
T ss_pred -----------CCceEEEEEccchh----HHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHH
Confidence 23345555543211 1111111122222222 2233333
Q ss_pred --------EEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccc-eeEEEecCCCEEEEEECCCCCCc
Q 003878 314 --------LVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA-QYEVIANDDTVFTFLTNKDAPKY 384 (789)
Q Consensus 314 --------l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~s~dG~~l~~~tn~~~~~~ 384 (789)
|+-.+ + ...+++++-... .+|..+++..-.. ....|||||++++-.+ -+.
T Consensus 331 ~~~~~~erlVSgs-D----d~tlflW~p~~~------------kkpi~rmtgHq~lVn~V~fSPd~r~IASaS----FDk 389 (480)
T KOG0271|consen 331 VLKDSGERLVSGS-D----DFTLFLWNPFKS------------KKPITRMTGHQALVNHVSFSPDGRYIASAS----FDK 389 (480)
T ss_pred hhccCcceeEEec-C----CceEEEeccccc------------ccchhhhhchhhheeeEEECCCccEEEEee----ccc
Confidence 43222 2 356888865432 2334344432221 2345899999877433 234
Q ss_pred eEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcE
Q 003878 385 KIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSV 464 (789)
Q Consensus 385 ~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~ 464 (789)
.|-+++..+|+....+-.|- ..+..++|+.|.+|+++.+.|. .|.+|++.+.+....|+.....|..+.++|||..
T Consensus 390 SVkLW~g~tGk~lasfRGHv--~~VYqvawsaDsRLlVS~SkDs--TLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~r 465 (480)
T KOG0271|consen 390 SVKLWDGRTGKFLASFRGHV--AAVYQVAWSADSRLLVSGSKDS--TLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQR 465 (480)
T ss_pred ceeeeeCCCcchhhhhhhcc--ceeEEEEeccCccEEEEcCCCc--eEEEEEeeeeeecccCCCCCceEEEEEecCCCce
Confidence 67788888887333232232 4577899999889999999885 7889999866655556555677888999999987
Q ss_pred EE
Q 003878 465 VF 466 (789)
Q Consensus 465 l~ 466 (789)
+.
T Consensus 466 V~ 467 (480)
T KOG0271|consen 466 VA 467 (480)
T ss_pred ee
Confidence 65
No 76
>PRK11071 esterase YqiA; Provisional
Probab=99.38 E-value=1.2e-11 Score=122.79 Aligned_cols=182 Identities=14% Similarity=0.021 Sum_probs=115.0
Q ss_pred cEEEEEcCCCCccCCCCCCH-HHHHHHHc--CCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCC
Q 003878 539 PCLLYGYGGFNISVTPSFSV-SRTILMRH--LGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 615 (789)
Q Consensus 539 P~ll~~hGg~~~~~~~~~~~-~~~~~l~~--~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~ 615 (789)
|.||++||-.++... |.. ....++.+ .+|.|.++|.||.+ ++..+.++.++++.
T Consensus 2 p~illlHGf~ss~~~--~~~~~~~~~l~~~~~~~~v~~~dl~g~~-------------------~~~~~~l~~l~~~~-- 58 (190)
T PRK11071 2 STLLYLHGFNSSPRS--AKATLLKNWLAQHHPDIEMIVPQLPPYP-------------------ADAAELLESLVLEH-- 58 (190)
T ss_pred CeEEEECCCCCCcch--HHHHHHHHHHHHhCCCCeEEeCCCCCCH-------------------HHHHHHHHHHHHHc--
Confidence 789999996554333 222 22345543 37999999999742 24555666666652
Q ss_pred CCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhc-C--CCCcHHHHHHHHhcCcccCC
Q 003878 616 QSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDF-G--CSEEEEEFYWLIKYSPLHNV 692 (789)
Q Consensus 616 d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~-g--~p~~~~~~~~l~~~sP~~~v 692 (789)
+.+++.++|+|+||++++.++.++|. + +|+.+|..++........+.. ...+ + -+-..+.++.++++.+.. +
T Consensus 59 ~~~~~~lvG~S~Gg~~a~~~a~~~~~--~-~vl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~-i 133 (190)
T PRK11071 59 GGDPLGLVGSSLGGYYATWLSQCFML--P-AVVVNPAVRPFELLTDYLGEN-ENPYTGQQYVLESRHIYDLKVMQIDP-L 133 (190)
T ss_pred CCCCeEEEEECHHHHHHHHHHHHcCC--C-EEEECCCCCHHHHHHHhcCCc-ccccCCCcEEEcHHHHHHHHhcCCcc-C
Confidence 23589999999999999999999984 3 456666666422211001110 0001 1 112234445555554433 2
Q ss_pred CCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHH
Q 003878 693 RRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEA 772 (789)
Q Consensus 693 ~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~ 772 (789)
+ . ..|++++||++|..||+.++.+++++. .+.+.++++|.+... .+..
T Consensus 134 ~-~----------~~~v~iihg~~De~V~~~~a~~~~~~~-----------------~~~~~~ggdH~f~~~----~~~~ 181 (190)
T PRK11071 134 E-S----------PDLIWLLQQTGDEVLDYRQAVAYYAAC-----------------RQTVEEGGNHAFVGF----ERYF 181 (190)
T ss_pred C-C----------hhhEEEEEeCCCCcCCHHHHHHHHHhc-----------------ceEEECCCCcchhhH----HHhH
Confidence 2 2 468899999999999999999998842 244669999999543 2455
Q ss_pred HHHHHHHH
Q 003878 773 ADRYGFMA 780 (789)
Q Consensus 773 ~~~~~fl~ 780 (789)
..+.+|+.
T Consensus 182 ~~i~~fl~ 189 (190)
T PRK11071 182 NQIVDFLG 189 (190)
T ss_pred HHHHHHhc
Confidence 66777763
No 77
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.35 E-value=6.9e-12 Score=129.28 Aligned_cols=203 Identities=14% Similarity=0.073 Sum_probs=120.8
Q ss_pred CccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCC
Q 003878 537 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQ 616 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d 616 (789)
..|+||++||..... ..|.. ....|. .||.|+.+|+||.|.... .....++++..+.+..+++. .+
T Consensus 12 ~~~~li~~hg~~~~~--~~~~~-~~~~l~-~~~~v~~~d~~G~G~s~~--------~~~~~~~~~~~~~~~~~i~~--~~ 77 (251)
T TIGR02427 12 GAPVLVFINSLGTDL--RMWDP-VLPALT-PDFRVLRYDKRGHGLSDA--------PEGPYSIEDLADDVLALLDH--LG 77 (251)
T ss_pred CCCeEEEEcCcccch--hhHHH-HHHHhh-cccEEEEecCCCCCCCCC--------CCCCCCHHHHHHHHHHHHHH--hC
Confidence 568999999954332 23333 445666 799999999999876421 11233566766666666654 24
Q ss_pred CCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccc-------c---cC-------Cccch-hhcCCCCcH-
Q 003878 617 SRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK-------F---TI-------GHAWV-SDFGCSEEE- 677 (789)
Q Consensus 617 ~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~-------~---~~-------~~~~~-~e~g~p~~~- 677 (789)
.+++.++|+|+||.++..++.++|++++++|+..+...+..... . .. ...|. ..+..+...
T Consensus 78 ~~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (251)
T TIGR02427 78 IERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAKIGTPESWNARIAAVRAEGLAALADAVLERWFTPGFREAHPAR 157 (251)
T ss_pred CCceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCccccCchhhHHHHHhhhhhccHHHHHHHHHHHHcccccccCChHH
Confidence 46899999999999999999999999999887765432211000 0 00 00000 011111100
Q ss_pred -HHHH-H---------------HHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCC
Q 003878 678 -EEFY-W---------------LIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSL 740 (789)
Q Consensus 678 -~~~~-~---------------l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~ 740 (789)
+.+. . +...+....+.+. ..|+|+++|++|..+|++...++.+.+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~Pvlii~g~~D~~~~~~~~~~~~~~~~~------ 221 (251)
T TIGR02427 158 LDLYRNMLVRQPPDGYAGCCAAIRDADFRDRLGAI----------AVPTLCIAGDQDGSTPPELVREIADLVPG------ 221 (251)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcccHHHHhhhc----------CCCeEEEEeccCCcCChHHHHHHHHhCCC------
Confidence 0111 0 0011111122222 57999999999999999877776655432
Q ss_pred CCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHH
Q 003878 741 ENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFM 779 (789)
Q Consensus 741 ~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl 779 (789)
..+.+++++||....... ......+.+|+
T Consensus 222 --------~~~~~~~~~gH~~~~~~p--~~~~~~i~~fl 250 (251)
T TIGR02427 222 --------ARFAEIRGAGHIPCVEQP--EAFNAALRDFL 250 (251)
T ss_pred --------ceEEEECCCCCcccccCh--HHHHHHHHHHh
Confidence 367888999998654333 23344555554
No 78
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=99.35 E-value=1.1e-10 Score=123.33 Aligned_cols=235 Identities=12% Similarity=-0.009 Sum_probs=138.6
Q ss_pred EEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCC-CCCHHHHHHHHcCCeEEEEEeecCCCCCChhHH
Q 003878 509 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTP-SFSVSRTILMRHLGAVFCIANIRGGGEYGEEWH 587 (789)
Q Consensus 509 ~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~-~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~ 587 (789)
+.+.++. +| .++.+.++.|.+. +.|.+|++|||....... .........|+++||.|+.+|+||.|.....
T Consensus 3 ~~~~~~~-~~-~~l~g~~~~p~~~----~~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G~G~S~~~-- 74 (274)
T TIGR03100 3 RALTFSC-EG-ETLVGVLHIPGAS----HTTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRGMGDSEGE-- 74 (274)
T ss_pred eeEEEEc-CC-cEEEEEEEcCCCC----CCCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCCCCCCCCC--
Confidence 3566664 57 7899999998752 345677778776543322 1112334556669999999999998864311
Q ss_pred hcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccc-------
Q 003878 588 KGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK------- 660 (789)
Q Consensus 588 ~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~------- 660 (789)
........+|+.+++++|.++- ...++|+++|+|+||++++.++.. ++.++++|+.+|++.......
T Consensus 75 ----~~~~~~~~~d~~~~~~~l~~~~-~g~~~i~l~G~S~Gg~~a~~~a~~-~~~v~~lil~~p~~~~~~~~~~~~~~~~ 148 (274)
T TIGR03100 75 ----NLGFEGIDADIAAAIDAFREAA-PHLRRIVAWGLCDAASAALLYAPA-DLRVAGLVLLNPWVRTEAAQAASRIRHY 148 (274)
T ss_pred ----CCCHHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECHHHHHHHHHhhh-CCCccEEEEECCccCCcccchHHHHHHH
Confidence 0111234689999999998651 122579999999999999888765 568999999998754222100
Q ss_pred ----ccCCccchhhc-CCCCcHHHHHHHH----hcCccc--------------CCCCCCCCCCCCCCCCCeEEEEecCCC
Q 003878 661 ----FTIGHAWVSDF-GCSEEEEEFYWLI----KYSPLH--------------NVRRPWEQNPDKPFQYPSTLLLTADHD 717 (789)
Q Consensus 661 ----~~~~~~~~~e~-g~p~~~~~~~~l~----~~sP~~--------------~v~~~~~~~~~~~~~~pp~Li~~g~~D 717 (789)
...+..|...+ |..+..+..+.+. ++.|.. .+.. ...|+|+++|..|
T Consensus 149 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~~P~ll~~g~~D 218 (274)
T TIGR03100 149 YLGQLLSADFWRKLLSGEVNLGSSLRGLGDALLKARQKGDEVAHGGLAERMKAGLER----------FQGPVLFILSGND 218 (274)
T ss_pred HHHHHhChHHHHHhcCCCccHHHHHHHHHHHHHhhhhcCCCcccchHHHHHHHHHHh----------cCCcEEEEEcCcc
Confidence 00111222111 1111000011111 121110 0111 2579999999999
Q ss_pred CCCCcHHH-----HHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHH
Q 003878 718 DRVVPLHS-----LKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780 (789)
Q Consensus 718 ~~V~~~~~-----~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 780 (789)
...+.... .++.+.+. ...+++.++++++|....... +.+..+.+.+||.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~l~------------~~~v~~~~~~~~~H~l~~e~~-~~~v~~~i~~wL~ 273 (274)
T TIGR03100 219 LTAQEFADSVLGEPAWRGALE------------DPGIERVEIDGADHTFSDRVW-REWVAARTTEWLR 273 (274)
T ss_pred hhHHHHHHHhccChhhHHHhh------------cCCeEEEecCCCCcccccHHH-HHHHHHHHHHHHh
Confidence 86432210 22222232 234789999999997654433 3567788999985
No 79
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=99.35 E-value=4.1e-11 Score=126.46 Aligned_cols=204 Identities=13% Similarity=0.024 Sum_probs=122.9
Q ss_pred CccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCC
Q 003878 537 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQ 616 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d 616 (789)
+.|+||++||..+... .|.. ....|+ ++|.|+.+|+||.|..... .....+++++.+.+..+++. .+
T Consensus 27 ~~~~vv~~hG~~~~~~--~~~~-~~~~l~-~~~~vi~~D~~G~G~S~~~-------~~~~~~~~~~~~~l~~~i~~--~~ 93 (278)
T TIGR03056 27 AGPLLLLLHGTGASTH--SWRD-LMPPLA-RSFRVVAPDLPGHGFTRAP-------FRFRFTLPSMAEDLSALCAA--EG 93 (278)
T ss_pred CCCeEEEEcCCCCCHH--HHHH-HHHHHh-hCcEEEeecCCCCCCCCCc-------cccCCCHHHHHHHHHHHHHH--cC
Confidence 3589999999765432 3333 345666 6899999999998753211 11134567777777666654 23
Q ss_pred CCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccc-c--------------ccc---------CCccchhhc-
Q 003878 617 SRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY-H--------------KFT---------IGHAWVSDF- 671 (789)
Q Consensus 617 ~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~-~--------------~~~---------~~~~~~~e~- 671 (789)
.+++.++|+|+||.+++.++.++|++.+++|+..+....... . ... ....+....
T Consensus 94 ~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (278)
T TIGR03056 94 LSPDGVIGHSAGAAIALRLALDGPVTPRMVVGINAALMPFEGMAGTLFPYMARVLACNPFTPPMMSRGAADQQRVERLIR 173 (278)
T ss_pred CCCceEEEECccHHHHHHHHHhCCcccceEEEEcCcccccccccccccchhhHhhhhcccchHHHHhhcccCcchhHHhh
Confidence 357899999999999999999999999888877664432110 0 000 000000000
Q ss_pred --CCCCcHHHHHH-----------------HHhcCc--c-cCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHH
Q 003878 672 --GCSEEEEEFYW-----------------LIKYSP--L-HNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLL 729 (789)
Q Consensus 672 --g~p~~~~~~~~-----------------l~~~sP--~-~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~ 729 (789)
+...++..... +..++. . ..+++ ...|+|+++|++|..||+..+..+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------i~~P~lii~g~~D~~vp~~~~~~~~ 243 (278)
T TIGR03056 174 DTGSLLDKAGMTYYGRLIRSPAHVDGALSMMAQWDLAPLNRDLPR----------ITIPLHLIAGEEDKAVPPDESKRAA 243 (278)
T ss_pred ccccccccchhhHHHHhhcCchhhhHHHHHhhcccccchhhhccc----------CCCCEEEEEeCCCcccCHHHHHHHH
Confidence 00001100100 011110 0 01122 2579999999999999998887776
Q ss_pred HHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHH
Q 003878 730 ATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFM 779 (789)
Q Consensus 730 ~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl 779 (789)
+.+.. +++.+++++||.+..... .+..+.+.+|+
T Consensus 244 ~~~~~--------------~~~~~~~~~gH~~~~e~p--~~~~~~i~~f~ 277 (278)
T TIGR03056 244 TRVPT--------------ATLHVVPGGGHLVHEEQA--DGVVGLILQAA 277 (278)
T ss_pred HhccC--------------CeEEEECCCCCcccccCH--HHHHHHHHHHh
Confidence 55443 367888999998764333 35566677775
No 80
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.35 E-value=7.1e-11 Score=130.66 Aligned_cols=244 Identities=18% Similarity=0.135 Sum_probs=155.1
Q ss_pred CeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecc-cccccccc
Q 003878 103 PQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEAD-ALSWVCFC 181 (789)
Q Consensus 103 ~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~-~~~~~~~~ 181 (789)
....|+.-+......+++.+... .+..+.|||||+.++|..-+.+. ...++++|+.++..... ...+
T Consensus 171 ~~~~l~~~D~dg~~~~~l~~~~~-------~~~~p~ws~~~~~~~y~~f~~~~-~~~i~~~~l~~g~~~~i~~~~g---- 238 (425)
T COG0823 171 LPYELALGDYDGYNQQKLTDSGS-------LILTPAWSPDGKKLAYVSFELGG-CPRIYYLDLNTGKRPVILNFNG---- 238 (425)
T ss_pred CCceEEEEccCCcceeEecccCc-------ceeccccCcCCCceEEEEEecCC-CceEEEEeccCCccceeeccCC----
Confidence 34556766543233445554442 35678899999999998655443 27899999999954321 1111
Q ss_pred cccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCC
Q 003878 182 FSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGK 261 (789)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~ 261 (789)
....++|||||++|+|+....
T Consensus 239 ------------------------------------------------------~~~~P~fspDG~~l~f~~~rd----- 259 (425)
T COG0823 239 ------------------------------------------------------NNGAPAFSPDGSKLAFSSSRD----- 259 (425)
T ss_pred ------------------------------------------------------ccCCccCCCCCCEEEEEECCC-----
Confidence 137899999999999996532
Q ss_pred CCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcc
Q 003878 262 DMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLE 341 (789)
Q Consensus 262 ~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~ 341 (789)
...+||+.++.+.+... +.... .....+.|||||++|+|.+.+.+ ...||+++++++.
T Consensus 260 -----------g~~~iy~~dl~~~~~~~--Lt~~~---gi~~~Ps~spdG~~ivf~Sdr~G--~p~I~~~~~~g~~---- 317 (425)
T COG0823 260 -----------GSPDIYLMDLDGKNLPR--LTNGF---GINTSPSWSPDGSKIVFTSDRGG--RPQIYLYDLEGSQ---- 317 (425)
T ss_pred -----------CCccEEEEcCCCCccee--cccCC---ccccCccCCCCCCEEEEEeCCCC--CcceEEECCCCCc----
Confidence 45679999998876332 22222 12236899999999999987665 5689999998742
Q ss_pred cccccCCCCccEeeeccc-cceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecC-CE
Q 003878 342 GFKKRDGLLPFVKLIDGF-DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQ 419 (789)
Q Consensus 342 ~~~~~~~~~~~~~l~~~~-~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~-~~ 419 (789)
...++... ....+.|+|||++|+|.+-. .+...++..++.++..++.+.. . ...+..++.++ ..
T Consensus 318 ----------~~riT~~~~~~~~p~~SpdG~~i~~~~~~-~g~~~i~~~~~~~~~~~~~lt~-~--~~~e~ps~~~ng~~ 383 (425)
T COG0823 318 ----------VTRLTFSGGGNSNPVWSPDGDKIVFESSS-GGQWDIDKNDLASGGKIRILTS-T--YLNESPSWAPNGRM 383 (425)
T ss_pred ----------eeEeeccCCCCcCccCCCCCCEEEEEecc-CCceeeEEeccCCCCcEEEccc-c--ccCCCCCcCCCCce
Confidence 12333322 22357799999999998843 3347788888876654444432 2 22334445553 44
Q ss_pred EEEEEEeCCeEEEEEEECCCCceeeecccCCeeEE
Q 003878 420 MIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVN 454 (789)
Q Consensus 420 lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~ 454 (789)
++++....+.+.+...++. |+..+.+....+.+.
T Consensus 384 i~~~s~~~~~~~l~~~s~~-g~~~~~~~~~~~~~~ 417 (425)
T COG0823 384 IMFSSGQGGGSVLSLVSLD-GRVSRPLPLADGDVR 417 (425)
T ss_pred EEEeccCCCCceEEEeecc-ceeEEEEeccCccee
Confidence 5555555556677777775 665444443334443
No 81
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=99.33 E-value=2.3e-11 Score=114.92 Aligned_cols=199 Identities=16% Similarity=0.134 Sum_probs=130.4
Q ss_pred EEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCC--CccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhH
Q 003878 509 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGF--NISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEW 586 (789)
Q Consensus 509 ~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~--~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~ 586 (789)
..+.++..-| .+.+.. -|.+ ....|+.|.+|=-+ +..+..--.......+.++||.++.+|+||=|..
T Consensus 5 ~~v~i~Gp~G--~le~~~-~~~~---~~~~~iAli~HPHPl~gGtm~nkvv~~la~~l~~~G~atlRfNfRgVG~S---- 74 (210)
T COG2945 5 PTVIINGPAG--RLEGRY-EPAK---TPAAPIALICHPHPLFGGTMNNKVVQTLARALVKRGFATLRFNFRGVGRS---- 74 (210)
T ss_pred CcEEecCCcc--cceecc-CCCC---CCCCceEEecCCCccccCccCCHHHHHHHHHHHhCCceEEeecccccccc----
Confidence 3455555555 233332 2332 24678877777653 2222222222345566679999999999996653
Q ss_pred HhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCcc
Q 003878 587 HKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHA 666 (789)
Q Consensus 587 ~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~ 666 (789)
+|.-+++....+|..+|++||.++. -+..-..+.|+|.|+++++.++.++|+. ...|+..|..+.
T Consensus 75 --~G~fD~GiGE~~Da~aaldW~~~~h-p~s~~~~l~GfSFGa~Ia~~la~r~~e~-~~~is~~p~~~~----------- 139 (210)
T COG2945 75 --QGEFDNGIGELEDAAAALDWLQARH-PDSASCWLAGFSFGAYIAMQLAMRRPEI-LVFISILPPINA----------- 139 (210)
T ss_pred --cCcccCCcchHHHHHHHHHHHHhhC-CCchhhhhcccchHHHHHHHHHHhcccc-cceeeccCCCCc-----------
Confidence 3445677888999999999999884 3434468999999999999999998763 344444443331
Q ss_pred chhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCC
Q 003878 667 WVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQT 746 (789)
Q Consensus 667 ~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~ 746 (789)
| .+ ..+.. +..|.|+++|+.|+.|.+....++.+ +
T Consensus 140 ~-----------df---------s~l~P----------~P~~~lvi~g~~Ddvv~l~~~l~~~~---------------~ 174 (210)
T COG2945 140 Y-----------DF---------SFLAP----------CPSPGLVIQGDADDVVDLVAVLKWQE---------------S 174 (210)
T ss_pred h-----------hh---------hhccC----------CCCCceeEecChhhhhcHHHHHHhhc---------------C
Confidence 0 01 01111 24599999999999888777666643 4
Q ss_pred CcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHH
Q 003878 747 NPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780 (789)
Q Consensus 747 ~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 780 (789)
.+..+++.++++|.|... .....+.+.+|+.
T Consensus 175 ~~~~~i~i~~a~HFF~gK---l~~l~~~i~~~l~ 205 (210)
T COG2945 175 IKITVITIPGADHFFHGK---LIELRDTIADFLE 205 (210)
T ss_pred CCCceEEecCCCceeccc---HHHHHHHHHHHhh
Confidence 566788889999998653 3445566777773
No 82
>COG0400 Predicted esterase [General function prediction only]
Probab=99.33 E-value=5e-11 Score=118.36 Aligned_cols=185 Identities=18% Similarity=0.119 Sum_probs=125.2
Q ss_pred CCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCC--CCChh---HHhcccccCC--cchHHHHHHHHH
Q 003878 535 DGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGG--EYGEE---WHKGGALAKK--QNCFDDFISASE 607 (789)
Q Consensus 535 ~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g--~~g~~---~~~~~~~~~~--~~~~~D~~~~~~ 607 (789)
+...|+||+.||-.+. ...|.+ +..++. -...++. +||.- +.+.. |...+..+.+ ......+.+.++
T Consensus 15 ~p~~~~iilLHG~Ggd--e~~~~~-~~~~~~-P~~~~is--~rG~v~~~g~~~~f~~~~~~~~d~edl~~~~~~~~~~l~ 88 (207)
T COG0400 15 DPAAPLLILLHGLGGD--ELDLVP-LPELIL-PNATLVS--PRGPVAENGGPRFFRRYDEGSFDQEDLDLETEKLAEFLE 88 (207)
T ss_pred CCCCcEEEEEecCCCC--hhhhhh-hhhhcC-CCCeEEc--CCCCccccCcccceeecCCCccchhhHHHHHHHHHHHHH
Confidence 4567899999995432 334443 333333 2344444 34422 12222 3333222211 112345556666
Q ss_pred HHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcC
Q 003878 608 YLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYS 687 (789)
Q Consensus 608 ~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~s 687 (789)
.+.++.-++++|+++.|+|+|+.+++.++.++|++|+++|+..|..-....
T Consensus 89 ~~~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~~----------------------------- 139 (207)
T COG0400 89 ELAEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEPE----------------------------- 139 (207)
T ss_pred HHHHHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCCc-----------------------------
Confidence 677777789999999999999999999999999999999988885421000
Q ss_pred cccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhh
Q 003878 688 PLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQK 767 (789)
Q Consensus 688 P~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~ 767 (789)
+..+. ..+|+|++||..|++||..++.++.+.|++. |..++.+.++ .||....
T Consensus 140 ~~~~~------------~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~----------g~~v~~~~~~-~GH~i~~---- 192 (207)
T COG0400 140 LLPDL------------AGTPILLSHGTEDPVVPLALAEALAEYLTAS----------GADVEVRWHE-GGHEIPP---- 192 (207)
T ss_pred ccccc------------CCCeEEEeccCcCCccCHHHHHHHHHHHHHc----------CCCEEEEEec-CCCcCCH----
Confidence 00111 3579999999999999999999999999998 9999999998 9998853
Q ss_pred HHHHHHHHHHHHHHHh
Q 003878 768 MIDEAADRYGFMAKML 783 (789)
Q Consensus 768 ~~~~~~~~~~fl~~~l 783 (789)
++++.+..|+...+
T Consensus 193 --e~~~~~~~wl~~~~ 206 (207)
T COG0400 193 --EELEAARSWLANTL 206 (207)
T ss_pred --HHHHHHHHHHHhcc
Confidence 34456666887654
No 83
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.32 E-value=6.8e-11 Score=124.80 Aligned_cols=108 Identities=17% Similarity=0.099 Sum_probs=75.9
Q ss_pred CccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCC
Q 003878 537 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQ 616 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d 616 (789)
+.|.||++||+++.... +......++.+.||.|+.+|.||.|...... ......+++++.+.+..+++. .+
T Consensus 24 ~~~~vl~~hG~~g~~~~--~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~ 94 (288)
T TIGR01250 24 EKIKLLLLHGGPGMSHE--YLENLRELLKEEGREVIMYDQLGCGYSDQPD-----DSDELWTIDYFVDELEEVREK--LG 94 (288)
T ss_pred CCCeEEEEcCCCCccHH--HHHHHHHHHHhcCCEEEEEcCCCCCCCCCCC-----cccccccHHHHHHHHHHHHHH--cC
Confidence 35788999998776432 2223456666459999999999977532100 001124566666666666654 23
Q ss_pred CCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcc
Q 003878 617 SRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 653 (789)
Q Consensus 617 ~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~ 653 (789)
.+++.++|+|+||.++..++.++|++++++|+..++.
T Consensus 95 ~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 131 (288)
T TIGR01250 95 LDKFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLD 131 (288)
T ss_pred CCcEEEEEeehHHHHHHHHHHhCccccceeeEecccc
Confidence 4579999999999999999999999999999877654
No 84
>PLN02872 triacylglycerol lipase
Probab=99.31 E-value=3.1e-11 Score=132.89 Aligned_cols=146 Identities=19% Similarity=0.232 Sum_probs=96.8
Q ss_pred CCCCcEEEEEEecCCCceEEEEEEEecCCCC-CCCCccEEEEEcCCCCccCCCCCC---HHHHHHHHcCCeEEEEEeecC
Q 003878 503 RSEFHVHQVFVPSKDGSTKIPMFIVSKKNIK-LDGSHPCLLYGYGGFNISVTPSFS---VSRTILMRHLGAVFCIANIRG 578 (789)
Q Consensus 503 ~~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~-~~~~~P~ll~~hGg~~~~~~~~~~---~~~~~~l~~~G~~v~~~~~RG 578 (789)
..+|.+|+..+++.|| ..+.+.-+.+.... ...+.|.||+.||....+..+... ......|+++||.|.++|.||
T Consensus 39 ~~gy~~e~h~v~T~DG-y~L~l~ri~~~~~~~~~~~~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~GydV~l~n~RG 117 (395)
T PLN02872 39 PAGYSCTEHTIQTKDG-YLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGDAWFLNSPEQSLGFILADHGFDVWVGNVRG 117 (395)
T ss_pred HcCCCceEEEEECCCC-cEEEEEEcCCCCCCCCCCCCCeEEEeCcccccccceeecCcccchHHHHHhCCCCcccccccc
Confidence 4478889999999999 88888776433211 123468899999987665543221 122334555999999999999
Q ss_pred CCC-CChhHHhcccc-----cCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC---ceeEEEec
Q 003878 579 GGE-YGEEWHKGGAL-----AKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPD---LFGCALAH 649 (789)
Q Consensus 579 ~g~-~g~~~~~~~~~-----~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd---~f~a~v~~ 649 (789)
.+. +|......... .+......|+.++++++.+.. .+++.++|||+||.++..++ .+|+ .++++++.
T Consensus 118 ~~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~---~~~v~~VGhS~Gg~~~~~~~-~~p~~~~~v~~~~~l 193 (395)
T PLN02872 118 TRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSIT---NSKIFIVGHSQGTIMSLAAL-TQPNVVEMVEAAALL 193 (395)
T ss_pred cccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhcc---CCceEEEEECHHHHHHHHHh-hChHHHHHHHHHHHh
Confidence 753 33222111111 111233479999999998652 36899999999999998655 5687 46666666
Q ss_pred CCcc
Q 003878 650 VGVM 653 (789)
Q Consensus 650 ~p~~ 653 (789)
+|+.
T Consensus 194 ~P~~ 197 (395)
T PLN02872 194 CPIS 197 (395)
T ss_pred cchh
Confidence 6653
No 85
>PRK10673 acyl-CoA esterase; Provisional
Probab=99.31 E-value=6.3e-11 Score=123.62 Aligned_cols=206 Identities=15% Similarity=0.025 Sum_probs=118.2
Q ss_pred CCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCC
Q 003878 535 DGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGY 614 (789)
Q Consensus 535 ~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~ 614 (789)
....|.||++||.++... .|.. ....|. .+|.|+.+|.||.|+.... ...++++..+-+..+++.
T Consensus 13 ~~~~~~iv~lhG~~~~~~--~~~~-~~~~l~-~~~~vi~~D~~G~G~s~~~---------~~~~~~~~~~d~~~~l~~-- 77 (255)
T PRK10673 13 PHNNSPIVLVHGLFGSLD--NLGV-LARDLV-NDHDIIQVDMRNHGLSPRD---------PVMNYPAMAQDLLDTLDA-- 77 (255)
T ss_pred CCCCCCEEEECCCCCchh--HHHH-HHHHHh-hCCeEEEECCCCCCCCCCC---------CCCCHHHHHHHHHHHHHH--
Confidence 345689999999876643 3333 344555 7899999999998764321 112344443333333332
Q ss_pred CCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecC--Ccccccccc-----------cccCCc-----cchhhcCCCC-
Q 003878 615 TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHV--GVMDMLRYH-----------KFTIGH-----AWVSDFGCSE- 675 (789)
Q Consensus 615 ~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~--p~~d~~~~~-----------~~~~~~-----~~~~e~g~p~- 675 (789)
...+++.++|+|+||.++..++.++|++++++|+.. |........ ...... .+....-...
T Consensus 78 l~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (255)
T PRK10673 78 LQIEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSEAGATTRQQAAAIMRQHLNEEG 157 (255)
T ss_pred cCCCceEEEEECHHHHHHHHHHHhCHhhcceEEEEecCCCCccchhhHHHHHHHHHhhhcccccHHHHHHHHHHhcCCHH
Confidence 234579999999999999999999999999988753 221100000 000000 0000000000
Q ss_pred -----------------cHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhcc
Q 003878 676 -----------------EEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCT 738 (789)
Q Consensus 676 -----------------~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~ 738 (789)
.+.....+.....+..+..+ ..|+|+++|++|..|+......+.+.+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~P~l~i~G~~D~~~~~~~~~~~~~~~~~---- 223 (255)
T PRK10673 158 VIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAW----------PHPALFIRGGNSPYVTEAYRDDLLAQFPQ---- 223 (255)
T ss_pred HHHHHHhcCCcceeEeeHHHHHHhHHHHhCCcccCCC----------CCCeEEEECCCCCCCCHHHHHHHHHhCCC----
Confidence 00000011111111112222 57999999999999998776666554432
Q ss_pred CCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHH
Q 003878 739 SLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 781 (789)
Q Consensus 739 ~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 781 (789)
+.+.+++++||....... ......+..||.+
T Consensus 224 ----------~~~~~~~~~gH~~~~~~p--~~~~~~l~~fl~~ 254 (255)
T PRK10673 224 ----------ARAHVIAGAGHWVHAEKP--DAVLRAIRRYLND 254 (255)
T ss_pred ----------cEEEEeCCCCCeeeccCH--HHHHHHHHHHHhc
Confidence 467888999998654333 3455677778754
No 86
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=99.31 E-value=8e-11 Score=126.67 Aligned_cols=122 Identities=15% Similarity=0.128 Sum_probs=81.5
Q ss_pred EEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhccc
Q 003878 512 FVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGA 591 (789)
Q Consensus 512 ~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~ 591 (789)
++...|| .+|.+... + ..+.|.||++||+++..... .....+...+|.|+++|.||.|.....
T Consensus 8 ~~~~~~~-~~l~y~~~---g---~~~~~~lvllHG~~~~~~~~----~~~~~~~~~~~~vi~~D~~G~G~S~~~------ 70 (306)
T TIGR01249 8 YLNVSDN-HQLYYEQS---G---NPDGKPVVFLHGGPGSGTDP----GCRRFFDPETYRIVLFDQRGCGKSTPH------ 70 (306)
T ss_pred eEEcCCC-cEEEEEEC---c---CCCCCEEEEECCCCCCCCCH----HHHhccCccCCEEEEECCCCCCCCCCC------
Confidence 4555678 77765432 1 11235689999987654321 122334347999999999997643211
Q ss_pred ccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 592 LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 592 ~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
.......++|+.+.+..+++.- ..+++.++|+|+||.+++.++.++|++++++|+..++
T Consensus 71 ~~~~~~~~~~~~~dl~~l~~~l--~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~ 129 (306)
T TIGR01249 71 ACLEENTTWDLVADIEKLREKL--GIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIF 129 (306)
T ss_pred CCcccCCHHHHHHHHHHHHHHc--CCCCEEEEEECHHHHHHHHHHHHChHhhhhheeeccc
Confidence 1111244567777777776652 3458999999999999999999999999988877654
No 87
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.30 E-value=3.2e-09 Score=111.73 Aligned_cols=228 Identities=14% Similarity=0.097 Sum_probs=141.5
Q ss_pred EEeeeccccceeeeeeec---------ccccce-EEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCC
Q 003878 216 YLFSLVKSTIYSFWSVVS---------QFKFSS-IAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTK 285 (789)
Q Consensus 216 ~~~~s~~~g~~~l~~~~~---------~~~~~~-~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~ 285 (789)
++|+||.+|..|||++++ .++..- =.-+.|||+|+|+... .||+++-.+.
T Consensus 238 vYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvFq~~G--------------------dIylydP~td 297 (668)
T COG4946 238 VYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVFQNAG--------------------DIYLYDPETD 297 (668)
T ss_pred EEEEecccCccceEEeccCCchhhhcCCchhccccccCCCCcEEEEecCC--------------------cEEEeCCCcC
Confidence 499999999999999998 111111 1235599999998532 1455544433
Q ss_pred CCCcEEEE---e-cCCCC------eeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEee
Q 003878 286 QSEDILCW---K-DPEHP------KYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKL 355 (789)
Q Consensus 286 ~~~~~~~~---~-~~~~~------~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l 355 (789)
.-+..-|- . .++.+ .+....+. -+|.++++.+. ...++++...+. ..++
T Consensus 298 ~lekldI~lpl~rk~k~~k~~~pskyledfa~-~~Gd~ia~VSR------GkaFi~~~~~~~--------------~iqv 356 (668)
T COG4946 298 SLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAV-VNGDYIALVSR------GKAFIMRPWDGY--------------SIQV 356 (668)
T ss_pred cceeeecCCccccccccccccCHHHhhhhhcc-CCCcEEEEEec------CcEEEECCCCCe--------------eEEc
Confidence 32221110 0 11111 11111222 27888887762 346777665532 1222
Q ss_pred eccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEE
Q 003878 356 IDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIR 435 (789)
Q Consensus 356 ~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~ 435 (789)
-......|..++.+++.+++-++.+ -.|-.+|..+++ .+.+.+.- ..|+.+.++++++.++..... -+|+++
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dg---D~l~iyd~~~~e-~kr~e~~l--g~I~av~vs~dGK~~vvaNdr--~el~vi 428 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDG---DKLGIYDKDGGE-VKRIEKDL--GNIEAVKVSPDGKKVVVANDR--FELWVI 428 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCC---ceEEEEecCCce-EEEeeCCc--cceEEEEEcCCCcEEEEEcCc--eEEEEE
Confidence 2222345656666777777666553 368888988876 45444333 678999999866666656554 489999
Q ss_pred ECCCCceeeecccC-CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCCceEEEeee
Q 003878 436 DLKNGSLLHQLPIE-IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRE 495 (789)
Q Consensus 436 dl~tG~~~~~l~~~-~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~l~~ 495 (789)
|+++|+. +.+... .+-+..+.+++++..+++++-+----..+.+||+.+++ .-..+.
T Consensus 429 didngnv-~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K--iy~vTT 486 (668)
T COG4946 429 DIDNGNV-RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK--IYDVTT 486 (668)
T ss_pred EecCCCe-eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe--EEEecC
Confidence 9999987 666543 56677889999999999888654455678889998884 444443
No 88
>PRK03592 haloalkane dehalogenase; Provisional
Probab=99.29 E-value=2.7e-10 Score=121.93 Aligned_cols=113 Identities=14% Similarity=0.111 Sum_probs=77.1
Q ss_pred CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCc
Q 003878 517 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQ 596 (789)
Q Consensus 517 dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~ 596 (789)
+| .++.+... +..|.||++||.++... .|.. ....|.+++ .|+++|.||.|..... ...
T Consensus 15 ~g-~~i~y~~~--------G~g~~vvllHG~~~~~~--~w~~-~~~~L~~~~-~via~D~~G~G~S~~~--------~~~ 73 (295)
T PRK03592 15 LG-SRMAYIET--------GEGDPIVFLHGNPTSSY--LWRN-IIPHLAGLG-RCLAPDLIGMGASDKP--------DID 73 (295)
T ss_pred CC-EEEEEEEe--------CCCCEEEEECCCCCCHH--HHHH-HHHHHhhCC-EEEEEcCCCCCCCCCC--------CCC
Confidence 77 77654432 23478999999876543 3333 344555355 9999999998864321 111
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 597 NCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 597 ~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
.++++..+.+..+++. ...+++.++|+|+||.+++.++.++|++++++|+..++
T Consensus 74 ~~~~~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~ 127 (295)
T PRK03592 74 YTFADHARYLDAWFDA--LGLDDVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAI 127 (295)
T ss_pred CCHHHHHHHHHHHHHH--hCCCCeEEEEECHHHHHHHHHHHhChhheeEEEEECCC
Confidence 2445554444444444 23368999999999999999999999999999988763
No 89
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=99.29 E-value=5.3e-11 Score=127.30 Aligned_cols=109 Identities=13% Similarity=0.035 Sum_probs=74.8
Q ss_pred ccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCC
Q 003878 538 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 617 (789)
Q Consensus 538 ~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~ 617 (789)
.|.||++||..+.+. .|... ...|. ..|.|+++|.||.|.....- ..........+++|+.+.+..+++.- ..
T Consensus 29 ~~~vlllHG~~~~~~--~w~~~-~~~L~-~~~~vi~~DlpG~G~S~~~~-~~~~~~~~~~~~~~~a~~l~~~l~~l--~~ 101 (294)
T PLN02824 29 GPALVLVHGFGGNAD--HWRKN-TPVLA-KSHRVYAIDLLGYGYSDKPN-PRSAPPNSFYTFETWGEQLNDFCSDV--VG 101 (294)
T ss_pred CCeEEEECCCCCChh--HHHHH-HHHHH-hCCeEEEEcCCCCCCCCCCc-cccccccccCCHHHHHHHHHHHHHHh--cC
Confidence 478999999766543 44443 34455 34699999999988643210 00000012346677766666666542 23
Q ss_pred CcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcc
Q 003878 618 RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 653 (789)
Q Consensus 618 ~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~ 653 (789)
+++.++|||+||.+++.++.++|++++++|+..|..
T Consensus 102 ~~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~ 137 (294)
T PLN02824 102 DPAFVICNSVGGVVGLQAAVDAPELVRGVMLINISL 137 (294)
T ss_pred CCeEEEEeCHHHHHHHHHHHhChhheeEEEEECCCc
Confidence 689999999999999999999999999999987643
No 90
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.27 E-value=2.6e-10 Score=117.35 Aligned_cols=237 Identities=15% Similarity=0.124 Sum_probs=144.8
Q ss_pred EecCCCceEEE-EEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhccc
Q 003878 513 VPSKDGSTKIP-MFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGA 591 (789)
Q Consensus 513 ~~s~dg~~~i~-~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~ 591 (789)
+...|| --+- .|..-|.+ .+.|+||..||--|++.++ |...+...+.++||.++++|.||.++.-.. ..
T Consensus 54 v~~pdg-~~~~ldw~~~p~~----~~~P~vVl~HGL~G~s~s~-y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~----~p 123 (345)
T COG0429 54 LETPDG-GFIDLDWSEDPRA----AKKPLVVLFHGLEGSSNSP-YARGLMRALSRRGWLVVVFHFRGCSGEANT----SP 123 (345)
T ss_pred EEcCCC-CEEEEeeccCccc----cCCceEEEEeccCCCCcCH-HHHHHHHHHHhcCCeEEEEecccccCCccc----Cc
Confidence 334455 3443 34433433 4569999999988887777 555556666679999999999998753211 11
Q ss_pred ccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC---ceeEEEecCCcccccc-ccc-------
Q 003878 592 LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPD---LFGCALAHVGVMDMLR-YHK------- 660 (789)
Q Consensus 592 ~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd---~f~a~v~~~p~~d~~~-~~~------- 660 (789)
...-....+|+..++++|.+.+. +.++.++|.|+||.+.+..+.+.-+ +-+|++..+|+ |+.. ...
T Consensus 124 ~~yh~G~t~D~~~~l~~l~~~~~--~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~-Dl~~~~~~l~~~~s~ 200 (345)
T COG0429 124 RLYHSGETEDIRFFLDWLKARFP--PRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPF-DLEACAYRLDSGFSL 200 (345)
T ss_pred ceecccchhHHHHHHHHHHHhCC--CCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHH-HHHHHHHHhcCchhh
Confidence 11222335999999999998754 5799999999999555444444322 44555555553 2210 000
Q ss_pred ---------------------c--cCCcc---------chhhcCC----C--CcHHHHHHHHhcCcccCCCCCCCCCCCC
Q 003878 661 ---------------------F--TIGHA---------WVSDFGC----S--EEEEEFYWLIKYSPLHNVRRPWEQNPDK 702 (789)
Q Consensus 661 ---------------------~--~~~~~---------~~~e~g~----p--~~~~~~~~l~~~sP~~~v~~~~~~~~~~ 702 (789)
+ ..+.. -..||-+ | .-++..+++++-|++..+.++
T Consensus 201 ~ly~r~l~~~L~~~~~~kl~~l~~~~p~~~~~~ik~~~ti~eFD~~~Tap~~Gf~da~dYYr~aSs~~~L~~I------- 273 (345)
T COG0429 201 RLYSRYLLRNLKRNAARKLKELEPSLPGTVLAAIKRCRTIREFDDLLTAPLHGFADAEDYYRQASSLPLLPKI------- 273 (345)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcCcccCcHHHHHHHhhchHHhccceeeecccCCCcHHHHHHhcccccccccc-------
Confidence 0 00000 0011111 1 112344668899999999998
Q ss_pred CCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCC-CC-ch-hhHHHHHHHHHHHH
Q 003878 703 PFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGV-GL-PT-QKMIDEAADRYGFM 779 (789)
Q Consensus 703 ~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~-~~-~~-~~~~~~~~~~~~fl 779 (789)
..|+||+|+.+|+.+++..--+.-.. . ...++|.+.+.+||.+ -. .. +...=.-+.+.+||
T Consensus 274 ---r~PtLii~A~DDP~~~~~~iP~~~~~---~----------np~v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l 337 (345)
T COG0429 274 ---RKPTLIINAKDDPFMPPEVIPKLQEM---L----------NPNVLLQLTEHGGHVGFLGGKLLHPQMWLEQRILDWL 337 (345)
T ss_pred ---ccceEEEecCCCCCCChhhCCcchhc---C----------CCceEEEeecCCceEEeccCccccchhhHHHHHHHHH
Confidence 78999999999999987542222111 2 4568899999999953 22 11 11111235688999
Q ss_pred HHHhCC
Q 003878 780 AKMLGA 785 (789)
Q Consensus 780 ~~~l~~ 785 (789)
...+..
T Consensus 338 ~~~~~~ 343 (345)
T COG0429 338 DPFLEA 343 (345)
T ss_pred HHHHhh
Confidence 887653
No 91
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.27 E-value=6.3e-11 Score=121.69 Aligned_cols=95 Identities=15% Similarity=0.061 Sum_probs=66.1
Q ss_pred cEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCC
Q 003878 539 PCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSR 618 (789)
Q Consensus 539 P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~ 618 (789)
|.||++||..+.. ..|.. ....|. .+|.|+.+|+||.|.... ....+++++. +.+.+.. .+
T Consensus 5 ~~iv~~HG~~~~~--~~~~~-~~~~l~-~~~~vi~~d~~G~G~s~~---------~~~~~~~~~~---~~~~~~~---~~ 65 (245)
T TIGR01738 5 VHLVLIHGWGMNA--EVFRC-LDEELS-AHFTLHLVDLPGHGRSRG---------FGPLSLADAA---EAIAAQA---PD 65 (245)
T ss_pred ceEEEEcCCCCch--hhHHH-HHHhhc-cCeEEEEecCCcCccCCC---------CCCcCHHHHH---HHHHHhC---CC
Confidence 7899999964432 23332 345666 689999999999775321 1122344444 3444331 26
Q ss_pred cEEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 619 KLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 619 ~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
++.++|+|+||.+++.++.++|++++++|+..+.
T Consensus 66 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~~il~~~~ 99 (245)
T TIGR01738 66 PAIWLGWSLGGLVALHIAATHPDRVRALVTVASS 99 (245)
T ss_pred CeEEEEEcHHHHHHHHHHHHCHHhhheeeEecCC
Confidence 8999999999999999999999999999876543
No 92
>PLN02965 Probable pheophorbidase
Probab=99.26 E-value=3.2e-10 Score=118.56 Aligned_cols=212 Identities=12% Similarity=0.116 Sum_probs=120.7
Q ss_pred EEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCC-C
Q 003878 540 CLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS-R 618 (789)
Q Consensus 540 ~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~-~ 618 (789)
+||++||..... ..|... ...|.++||.|+++|.||.|..... .....+++++.+-+..+++. .+. .
T Consensus 5 ~vvllHG~~~~~--~~w~~~-~~~L~~~~~~via~Dl~G~G~S~~~-------~~~~~~~~~~a~dl~~~l~~--l~~~~ 72 (255)
T PLN02965 5 HFVFVHGASHGA--WCWYKL-ATLLDAAGFKSTCVDLTGAGISLTD-------SNTVSSSDQYNRPLFALLSD--LPPDH 72 (255)
T ss_pred EEEEECCCCCCc--CcHHHH-HHHHhhCCceEEEecCCcCCCCCCC-------ccccCCHHHHHHHHHHHHHh--cCCCC
Confidence 499999976543 344443 3455448999999999998854211 11134466666655555554 222 5
Q ss_pred cEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcc---ccc---ccc--cccCCccchh---------------------
Q 003878 619 KLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM---DML---RYH--KFTIGHAWVS--------------------- 669 (789)
Q Consensus 619 ~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~---d~~---~~~--~~~~~~~~~~--------------------- 669 (789)
++.++|||+||.++..++.++|++++++|...+.. ... ... .......|..
T Consensus 73 ~~~lvGhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (255)
T PLN02965 73 KVILVGHSIGGGSVTEALCKFTDKISMAIYVAAAMVKPGSIISPRLKNVMEGTEKIWDYTFGEGPDKPPTGIMMKPEFVR 152 (255)
T ss_pred CEEEEecCcchHHHHHHHHhCchheeEEEEEccccCCCCCCccHHHHhhhhccccceeeeeccCCCCCcchhhcCHHHHH
Confidence 89999999999999999999999999998876542 100 000 0000000000
Q ss_pred h--cCCCCcHHHHHHHHhc-Cc--ccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCC
Q 003878 670 D--FGCSEEEEEFYWLIKY-SP--LHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSP 744 (789)
Q Consensus 670 e--~g~p~~~~~~~~l~~~-sP--~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~ 744 (789)
. +.. ...+........ .+ .........-.........|+|+++|++|..+|+..+..+.+.+...
T Consensus 153 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vP~lvi~g~~D~~~~~~~~~~~~~~~~~a--------- 222 (255)
T PLN02965 153 HYYYNQ-SPLEDYTLSSKLLRPAPVRAFQDLDKLPPNPEAEKVPRVYIKTAKDNLFDPVRQDVMVENWPPA--------- 222 (255)
T ss_pred HHHhcC-CCHHHHHHHHHhcCCCCCcchhhhhhccchhhcCCCCEEEEEcCCCCCCCHHHHHHHHHhCCcc---------
Confidence 0 011 000111111110 01 10000000000000013679999999999999998887777665533
Q ss_pred CCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHH
Q 003878 745 QTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780 (789)
Q Consensus 745 ~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 780 (789)
++.+++++||.......+ +..+.+.+|+.
T Consensus 223 -----~~~~i~~~GH~~~~e~p~--~v~~~l~~~~~ 251 (255)
T PLN02965 223 -----QTYVLEDSDHSAFFSVPT--TLFQYLLQAVS 251 (255)
T ss_pred -----eEEEecCCCCchhhcCHH--HHHHHHHHHHH
Confidence 688889999997654443 44555666654
No 93
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=99.25 E-value=3e-10 Score=120.28 Aligned_cols=220 Identities=14% Similarity=0.054 Sum_probs=130.1
Q ss_pred CCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCC
Q 003878 516 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 595 (789)
Q Consensus 516 ~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~ 595 (789)
.+| .+|.++.. .+ +...|.||++||..+... .|.. ....|. ++|.|+++|+||.|..... ..
T Consensus 9 ~~~-~~~~~~~~--~~---~~~~~plvllHG~~~~~~--~w~~-~~~~L~-~~~~vi~~Dl~G~G~S~~~--------~~ 70 (276)
T TIGR02240 9 LDG-QSIRTAVR--PG---KEGLTPLLIFNGIGANLE--LVFP-FIEALD-PDLEVIAFDVPGVGGSSTP--------RH 70 (276)
T ss_pred cCC-cEEEEEEe--cC---CCCCCcEEEEeCCCcchH--HHHH-HHHHhc-cCceEEEECCCCCCCCCCC--------CC
Confidence 367 77766543 11 112367899999655433 3443 345566 6899999999998864321 11
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccc------c-ccccC-----
Q 003878 596 QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR------Y-HKFTI----- 663 (789)
Q Consensus 596 ~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~------~-~~~~~----- 663 (789)
..+++++.+.++.+++. .+.+++.++|+|+||.+++.++.++|++++++|+.++...... . .....
T Consensus 71 ~~~~~~~~~~~~~~i~~--l~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (276)
T TIGR02240 71 PYRFPGLAKLAARMLDY--LDYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAAGAVMVPGKPKVLMMMASPRRYI 148 (276)
T ss_pred cCcHHHHHHHHHHHHHH--hCcCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCccccCCCchhHHHHhcCchhhh
Confidence 23456666555555554 2446899999999999999999999999999999876543210 0 00000
Q ss_pred Cc-----cchhhcCCC--CcHHHH-----------------HHHHh--cCcccCCCCCCCCCCCCCCCCCeEEEEecCCC
Q 003878 664 GH-----AWVSDFGCS--EEEEEF-----------------YWLIK--YSPLHNVRRPWEQNPDKPFQYPSTLLLTADHD 717 (789)
Q Consensus 664 ~~-----~~~~e~g~p--~~~~~~-----------------~~l~~--~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D 717 (789)
.. .....++.. .+++.. ..+.. ......+.++ ..|+|+++|++|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i----------~~P~lii~G~~D 218 (276)
T TIGR02240 149 QPSHGIHIAPDIYGGAFRRDPELAMAHASKVRSGGKLGYYWQLFAGLGWTSIHWLHKI----------QQPTLVLAGDDD 218 (276)
T ss_pred ccccccchhhhhccceeeccchhhhhhhhhcccCCCchHHHHHHHHcCCchhhHhhcC----------CCCEEEEEeCCC
Confidence 00 000001100 011100 00000 0011112232 579999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHH
Q 003878 718 DRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKM 782 (789)
Q Consensus 718 ~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 782 (789)
..+|+.++.++.+.+... ++.++++ ||....... .+....+.+|+.+.
T Consensus 219 ~~v~~~~~~~l~~~~~~~--------------~~~~i~~-gH~~~~e~p--~~~~~~i~~fl~~~ 266 (276)
T TIGR02240 219 PIIPLINMRLLAWRIPNA--------------ELHIIDD-GHLFLITRA--EAVAPIIMKFLAEE 266 (276)
T ss_pred CcCCHHHHHHHHHhCCCC--------------EEEEEcC-CCchhhccH--HHHHHHHHHHHHHh
Confidence 999999888887665432 5556654 998655433 35667788888764
No 94
>PRK03204 haloalkane dehalogenase; Provisional
Probab=99.25 E-value=1.8e-10 Score=122.70 Aligned_cols=103 Identities=14% Similarity=0.026 Sum_probs=75.0
Q ss_pred CccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCC
Q 003878 537 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQ 616 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d 616 (789)
..|.||++||..... ..|.. ....|. ++|.|+++|.||.|..+.. ......++++.+.+..++++ .+
T Consensus 33 ~~~~iv~lHG~~~~~--~~~~~-~~~~l~-~~~~vi~~D~~G~G~S~~~-------~~~~~~~~~~~~~~~~~~~~--~~ 99 (286)
T PRK03204 33 TGPPILLCHGNPTWS--FLYRD-IIVALR-DRFRCVAPDYLGFGLSERP-------SGFGYQIDEHARVIGEFVDH--LG 99 (286)
T ss_pred CCCEEEEECCCCccH--HHHHH-HHHHHh-CCcEEEEECCCCCCCCCCC-------CccccCHHHHHHHHHHHHHH--hC
Confidence 347899999975322 22332 345566 6899999999998754321 11123567888888887776 24
Q ss_pred CCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 617 SRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 617 ~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
.+++.++|+|+||.++..++..+|++++++|+..+.
T Consensus 100 ~~~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~ 135 (286)
T PRK03204 100 LDRYLSMGQDWGGPISMAVAVERADRVRGVVLGNTW 135 (286)
T ss_pred CCCEEEEEECccHHHHHHHHHhChhheeEEEEECcc
Confidence 468999999999999999999999999999876553
No 95
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=99.25 E-value=1.4e-10 Score=119.09 Aligned_cols=103 Identities=15% Similarity=0.121 Sum_probs=73.1
Q ss_pred cEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHH-HHHHHHcCCCCC
Q 003878 539 PCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISA-SEYLISAGYTQS 617 (789)
Q Consensus 539 P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~-~~~L~~~~~~d~ 617 (789)
|+||++||..+... .|.. ....|. +||.|+.+|.||.|..... ......++++.... +..+.+. .+.
T Consensus 2 ~~vv~~hG~~~~~~--~~~~-~~~~L~-~~~~v~~~d~~g~G~s~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~ 69 (251)
T TIGR03695 2 PVLVFLHGFLGSGA--DWQA-LIELLG-PHFRCLAIDLPGHGSSQSP------DEIERYDFEEAAQDILATLLDQ--LGI 69 (251)
T ss_pred CEEEEEcCCCCchh--hHHH-HHHHhc-ccCeEEEEcCCCCCCCCCC------CccChhhHHHHHHHHHHHHHHH--cCC
Confidence 78999999765433 3333 345555 7999999999997754211 11123445555554 5555544 245
Q ss_pred CcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcc
Q 003878 618 RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 653 (789)
Q Consensus 618 ~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~ 653 (789)
+++.++|||+||.++..++.++|+.++++++..+..
T Consensus 70 ~~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~~ 105 (251)
T TIGR03695 70 EPFFLVGYSMGGRIALYYALQYPERVQGLILESGSP 105 (251)
T ss_pred CeEEEEEeccHHHHHHHHHHhCchheeeeEEecCCC
Confidence 789999999999999999999999999999877654
No 96
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=99.24 E-value=8.7e-10 Score=114.65 Aligned_cols=214 Identities=12% Similarity=0.002 Sum_probs=132.7
Q ss_pred EEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCC--CCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHH
Q 003878 510 QVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT--PSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWH 587 (789)
Q Consensus 510 ~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~--~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~ 587 (789)
.+.+++..| . +-++++.|.+ .++.|+||++||..+.... ..+. .....|+++||.|+.+|+||.|.......
T Consensus 2 ~~~l~~~~g-~-~~~~~~~p~~---~~~~~~VlllHG~g~~~~~~~~~~~-~la~~La~~Gy~Vl~~Dl~G~G~S~g~~~ 75 (266)
T TIGR03101 2 PFFLDAPHG-F-RFCLYHPPVA---VGPRGVVIYLPPFAEEMNKSRRMVA-LQARAFAAGGFGVLQIDLYGCGDSAGDFA 75 (266)
T ss_pred CEEecCCCC-c-EEEEEecCCC---CCCceEEEEECCCcccccchhHHHH-HHHHHHHHCCCEEEEECCCCCCCCCCccc
Confidence 356677777 3 4466665654 2457999999995432211 1122 12345555999999999999875432211
Q ss_pred hcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccc----c--
Q 003878 588 KGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK----F-- 661 (789)
Q Consensus 588 ~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~----~-- 661 (789)
. ..-..-.+|+.+++++|.+.+ ..+|+++|+|+||.+++.++.++|+.++++|+..|+++...+.. +
T Consensus 76 ~----~~~~~~~~Dv~~ai~~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~g~~~l~~~lrl~~ 148 (266)
T TIGR03101 76 A----ARWDVWKEDVAAAYRWLIEQG---HPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVSGKQQLQQFLRLRL 148 (266)
T ss_pred c----CCHHHHHHHHHHHHHHHHhcC---CCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccchHHHHHHHHHHHH
Confidence 1 011123588899999998764 36899999999999999999999999999999999887543321 0
Q ss_pred ----cCCcc------c---------hhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEec-CCCCCCC
Q 003878 662 ----TIGHA------W---------VSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTA-DHDDRVV 721 (789)
Q Consensus 662 ----~~~~~------~---------~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g-~~D~~V~ 721 (789)
..+.. . ..-.|-.-.++..+.|.+......+. ...++|++.. ..+..-.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~~~~~~~~~~~~~ 217 (266)
T TIGR03101 149 VARRLGGESAEASNSLRERLLAGEDVEIAGYELAPALASDLDQRQLAPAVP-----------KNCPVHWFEVRPEEGATL 217 (266)
T ss_pred HHHhccccccccchhHHhhccCCCeEEEeceecCHHHHHHHHhcccCCCCC-----------CCCceEEEEeccccCCCC
Confidence 00000 0 00112222233334444432221111 1345666655 3344455
Q ss_pred cHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCC
Q 003878 722 PLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKA 757 (789)
Q Consensus 722 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~ 757 (789)
.....++.+++++. |..++...+++.
T Consensus 218 ~~~~~~l~~~~~~~----------g~~v~~~~~~~~ 243 (266)
T TIGR03101 218 SPVFSRLGEQWVQS----------GVEVTVDLVPGP 243 (266)
T ss_pred CHHHHHHHHHHHHc----------CCeEeeeecCCc
Confidence 56778999999998 999999999877
No 97
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.22 E-value=2.7e-11 Score=122.55 Aligned_cols=186 Identities=15% Similarity=0.071 Sum_probs=113.6
Q ss_pred EEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcE
Q 003878 541 LLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKL 620 (789)
Q Consensus 541 ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i 620 (789)
||++||..+.. ..|.. ....|+ +||.|+++|.||.|.....- .....++++..+.+..+++. ...+++
T Consensus 1 vv~~hG~~~~~--~~~~~-~~~~l~-~~~~v~~~d~~G~G~s~~~~------~~~~~~~~~~~~~l~~~l~~--~~~~~~ 68 (228)
T PF12697_consen 1 VVFLHGFGGSS--ESWDP-LAEALA-RGYRVIAFDLPGHGRSDPPP------DYSPYSIEDYAEDLAELLDA--LGIKKV 68 (228)
T ss_dssp EEEE-STTTTG--GGGHH-HHHHHH-TTSEEEEEECTTSTTSSSHS------SGSGGSHHHHHHHHHHHHHH--TTTSSE
T ss_pred eEEECCCCCCH--HHHHH-HHHHHh-CCCEEEEEecCCcccccccc------ccCCcchhhhhhhhhhcccc--cccccc
Confidence 78999987654 34444 445666 89999999999977543211 12234556666665555554 222689
Q ss_pred EEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccc---------cccC------Cccc----hhhcCCCCcH----
Q 003878 621 CIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH---------KFTI------GHAW----VSDFGCSEEE---- 677 (789)
Q Consensus 621 ~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~---------~~~~------~~~~----~~e~g~p~~~---- 677 (789)
.++|+|+||.+++.++.++|++++++|+..|........ .... ...+ ...+-.+...
T Consensus 69 ~lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (228)
T PF12697_consen 69 ILVGHSMGGMIALRLAARYPDRVKGLVLLSPPPPLPDSPSRSFGPSFIRRLLAWRSRSLRRLASRFFYRWFDGDEPEDLI 148 (228)
T ss_dssp EEEEETHHHHHHHHHHHHSGGGEEEEEEESESSSHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred cccccccccccccccccccccccccceeecccccccccccccccchhhhhhhhccccccccccccccccccccccccccc
Confidence 999999999999999999999999999998877532110 0000 0000 0000011000
Q ss_pred -----HHHHHHH----hcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCc
Q 003878 678 -----EEFYWLI----KYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNP 748 (789)
Q Consensus 678 -----~~~~~l~----~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 748 (789)
...+.+. ...+....... ..|+++++|++|..++.....++.+.+. .
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~pvl~i~g~~D~~~~~~~~~~~~~~~~--------------~ 204 (228)
T PF12697_consen 149 RSSRRALAEYLRSNLWQADLSEALPRI----------KVPVLVIHGEDDPIVPPESAEELADKLP--------------N 204 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGS----------SSEEEEEEETTSSSSHHHHHHHHHHHST--------------T
T ss_pred ccccccccccccccccccccccccccc----------CCCeEEeecCCCCCCCHHHHHHHHHHCC--------------C
Confidence 0001111 11122233333 5799999999999998666555554432 3
Q ss_pred EEEEEeCCCCcCCC
Q 003878 749 IIGRIERKAGHGVG 762 (789)
Q Consensus 749 ~~l~~~~~~gH~~~ 762 (789)
+++.+++++||...
T Consensus 205 ~~~~~~~~~gH~~~ 218 (228)
T PF12697_consen 205 AELVVIPGAGHFLF 218 (228)
T ss_dssp EEEEEETTSSSTHH
T ss_pred CEEEEECCCCCccH
Confidence 58899999999853
No 98
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=99.22 E-value=1.4e-10 Score=117.28 Aligned_cols=162 Identities=17% Similarity=0.076 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccc---ccc---CCccch----h
Q 003878 600 DDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH---KFT---IGHAWV----S 669 (789)
Q Consensus 600 ~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~---~~~---~~~~~~----~ 669 (789)
+-|..|++||.++..+++++|+|+|.|.||.+++.++...| .++|+|+.+|..-+.... ... .+..+. .
T Consensus 4 Eyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~~~~~~~~~~~~~~lp~~~~~~~~~ 82 (213)
T PF08840_consen 4 EYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVVFQGIGFYRDSSKPLPYLPFDISKF 82 (213)
T ss_dssp HHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB--SSEEEETTE--EE----B-GGG-
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeEecchhcccCCCccCCcCCcChhhc
Confidence 55789999999999999999999999999999999999998 799999988743322111 000 000000 0
Q ss_pred hcCCCCcH---HHHHHH------HhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHH-HHHHHHHHHhhccC
Q 003878 670 DFGCSEEE---EEFYWL------IKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHS-LKLLATMQYVLCTS 739 (789)
Q Consensus 670 e~g~p~~~---~~~~~l------~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~-~~~~~~L~~~~~~~ 739 (789)
.+..+... ..+... .+.-| +.++ ..|+|+++|++|...|..+. ..+.++|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~a~Ip---vE~i----------~~piLli~g~dD~~WpS~~~a~~i~~rL~~~---- 145 (213)
T PF08840_consen 83 SWNEPGLLRSRYAFELADDKAVEEARIP---VEKI----------KGPILLISGEDDQIWPSSEMAEQIEERLKAA---- 145 (213)
T ss_dssp EE-TTS-EE-TT-B--TTTGGGCCCB-----GGG------------SEEEEEEETT-SSS-HHHHHHHHHHHHHCT----
T ss_pred eecCCcceehhhhhhccccccccccccc---HHHc----------CCCEEEEEeCCCCccchHHHHHHHHHHHHHh----
Confidence 00000000 000000 01112 2222 67999999999999887664 4566678876
Q ss_pred CCCCCCCC--cEEEEEeCCCCcCCCCchh--------------------------hHHHHHHHHHHHHHHHhCC
Q 003878 740 LENSPQTN--PIIGRIERKAGHGVGLPTQ--------------------------KMIDEAADRYGFMAKMLGA 785 (789)
Q Consensus 740 ~~~~~~~~--~~~l~~~~~~gH~~~~~~~--------------------------~~~~~~~~~~~fl~~~l~~ 785 (789)
+. +++++.|+++||.+..+.. ...+....+++||.++|+.
T Consensus 146 ------~~~~~~~~l~Y~~aGH~i~~Py~P~~~~~~~~~~~~~~~~GG~~~~~a~A~~dsW~~~l~Fl~~~L~~ 213 (213)
T PF08840_consen 146 ------GFPHNVEHLSYPGAGHLIEPPYFPHCRASYHKFIGTPLAWGGEPEAHAKAQEDSWKKILEFLRKHLGQ 213 (213)
T ss_dssp ------T-----EEEEETTB-S---STT-----EEEETTTTEEEE--B-HHHHHHHHHHHHHHHHHHHHHH---
T ss_pred ------CCCCcceEEEcCCCCceecCCCCCCcccccccccCCcccCCCChHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 54 4889999999998642200 2356678899999999973
No 99
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=99.22 E-value=4.5e-10 Score=125.96 Aligned_cols=125 Identities=12% Similarity=0.054 Sum_probs=82.7
Q ss_pred EecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHH---cCCeEEEEEeecCCCCCChhHHhc
Q 003878 513 VPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMR---HLGAVFCIANIRGGGEYGEEWHKG 589 (789)
Q Consensus 513 ~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~---~~G~~v~~~~~RG~g~~g~~~~~~ 589 (789)
+.+..| .++.+..-.|.+. ...|.||++||..+... .|.......+. ++||.|+++|.||.|.....
T Consensus 180 ~~~~~~-~~l~~~~~gp~~~---~~k~~VVLlHG~~~s~~--~W~~~~~~~L~~~~~~~yrVia~Dl~G~G~S~~p---- 249 (481)
T PLN03087 180 WLSSSN-ESLFVHVQQPKDN---KAKEDVLFIHGFISSSA--FWTETLFPNFSDAAKSTYRLFAVDLLGFGRSPKP---- 249 (481)
T ss_pred eEeeCC-eEEEEEEecCCCC---CCCCeEEEECCCCccHH--HHHHHHHHHHHHHhhCCCEEEEECCCCCCCCcCC----
Confidence 344456 6777766666542 23478999999865542 23221112222 37999999999997754321
Q ss_pred ccccCCcchHHHHHHHHH-HHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 590 GALAKKQNCFDDFISASE-YLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 590 ~~~~~~~~~~~D~~~~~~-~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
.....++++..+.+. .+++. ...+++.++|||+||+++..++.++|++++++|+..|.
T Consensus 250 ---~~~~ytl~~~a~~l~~~ll~~--lg~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~ 308 (481)
T PLN03087 250 ---ADSLYTLREHLEMIERSVLER--YKVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPP 308 (481)
T ss_pred ---CCCcCCHHHHHHHHHHHHHHH--cCCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCC
Confidence 112234666665553 45544 23468999999999999999999999999999988753
No 100
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.21 E-value=2.9e-10 Score=125.81 Aligned_cols=103 Identities=14% Similarity=0.103 Sum_probs=76.7
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCC
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 615 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~ 615 (789)
+..|.||++||..+.... |.. ....|. ++|.|+++|.||.|.... .....+++++.+.+..+++. .
T Consensus 129 ~~~~~vl~~HG~~~~~~~--~~~-~~~~l~-~~~~v~~~d~~g~G~s~~--------~~~~~~~~~~~~~~~~~~~~--~ 194 (371)
T PRK14875 129 GDGTPVVLIHGFGGDLNN--WLF-NHAALA-AGRPVIALDLPGHGASSK--------AVGAGSLDELAAAVLAFLDA--L 194 (371)
T ss_pred CCCCeEEEECCCCCccch--HHH-HHHHHh-cCCEEEEEcCCCCCCCCC--------CCCCCCHHHHHHHHHHHHHh--c
Confidence 345789999986554332 222 234566 679999999999886532 12234677777777777665 4
Q ss_pred CCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 616 QSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 616 d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
++.+++++|+|+||+++..++.++|++++++|+..|.
T Consensus 195 ~~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~ 231 (371)
T PRK14875 195 GIERAHLVGHSMGGAVALRLAARAPQRVASLTLIAPA 231 (371)
T ss_pred CCccEEEEeechHHHHHHHHHHhCchheeEEEEECcC
Confidence 6678999999999999999999999999999988765
No 101
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=99.21 E-value=4.1e-10 Score=123.93 Aligned_cols=209 Identities=12% Similarity=0.044 Sum_probs=120.4
Q ss_pred ccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCC
Q 003878 538 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 617 (789)
Q Consensus 538 ~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~ 617 (789)
.|.||++||..+... .|... ...|. .+|.|+.+|+||.|..... .....+++++.+.+..+++. ...
T Consensus 88 gp~lvllHG~~~~~~--~w~~~-~~~L~-~~~~via~Dl~G~G~S~~~-------~~~~~~~~~~a~~l~~~l~~--l~~ 154 (360)
T PLN02679 88 GPPVLLVHGFGASIP--HWRRN-IGVLA-KNYTVYAIDLLGFGASDKP-------PGFSYTMETWAELILDFLEE--VVQ 154 (360)
T ss_pred CCeEEEECCCCCCHH--HHHHH-HHHHh-cCCEEEEECCCCCCCCCCC-------CCccccHHHHHHHHHHHHHH--hcC
Confidence 378999999765432 34433 34566 6899999999998754211 01123445555544444443 233
Q ss_pred CcEEEEeeChHHHHHHHHHH-hCCCceeEEEecCCcccccc-----ccc--ccCCcc---------------c-------
Q 003878 618 RKLCIEGGSNGGLLVGACIN-QRPDLFGCALAHVGVMDMLR-----YHK--FTIGHA---------------W------- 667 (789)
Q Consensus 618 ~~i~i~G~S~GG~l~~~~~~-~~pd~f~a~v~~~p~~d~~~-----~~~--~~~~~~---------------~------- 667 (789)
+++.++|+|+||+++..++. .+|++++++|+..+...+.. ... ...+.. +
T Consensus 155 ~~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (360)
T PLN02679 155 KPTVLIGNSVGSLACVIAASESTRDLVRGLVLLNCAGGMNNKAVVDDWRIKLLLPLLWLIDFLLKQRGIASALFNRVKQR 234 (360)
T ss_pred CCeEEEEECHHHHHHHHHHHhcChhhcCEEEEECCccccccccccchHHHhhhcchHHHHHHHhhchhhHHHHHHHhcCH
Confidence 68999999999999988776 46999999998765321100 000 000000 0
Q ss_pred --h-----hhcCCC--CcHHHHHHH-------------HhcC-------cccCCCCCCCCCCCCCCCCCeEEEEecCCCC
Q 003878 668 --V-----SDFGCS--EEEEEFYWL-------------IKYS-------PLHNVRRPWEQNPDKPFQYPSTLLLTADHDD 718 (789)
Q Consensus 668 --~-----~e~g~p--~~~~~~~~l-------------~~~s-------P~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~ 718 (789)
. .-++++ ..++..+.+ .++. ....+.+ ...|+|+++|++|.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------i~~PtLii~G~~D~ 304 (360)
T PLN02679 235 DNLKNILLSVYGNKEAVDDELVEIIRGPADDEGALDAFVSIVTGPPGPNPIKLIPR----------ISLPILVLWGDQDP 304 (360)
T ss_pred HHHHHHHHHhccCcccCCHHHHHHHHhhccCCChHHHHHHHHhcCCCCCHHHHhhh----------cCCCEEEEEeCCCC
Confidence 0 001111 011111111 1100 0011222 25799999999999
Q ss_pred CCCcHHH-HHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHH
Q 003878 719 RVVPLHS-LKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 781 (789)
Q Consensus 719 ~V~~~~~-~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 781 (789)
.+|+..+ .++.+.+.+. -...++.+++++||....... .+..+.+.+||.+
T Consensus 305 ~~p~~~~~~~~~~~l~~~----------ip~~~l~~i~~aGH~~~~E~P--e~~~~~I~~FL~~ 356 (360)
T PLN02679 305 FTPLDGPVGKYFSSLPSQ----------LPNVTLYVLEGVGHCPHDDRP--DLVHEKLLPWLAQ 356 (360)
T ss_pred CcCchhhHHHHHHhhhcc----------CCceEEEEcCCCCCCccccCH--HHHHHHHHHHHHh
Confidence 9998743 3455555543 223688999999998765443 3566788889864
No 102
>PRK06489 hypothetical protein; Provisional
Probab=99.20 E-value=4.2e-10 Score=123.94 Aligned_cols=108 Identities=18% Similarity=0.146 Sum_probs=69.5
Q ss_pred ccEEEEEcCCCCccCCCCCCHHHHH--------HHHcCCeEEEEEeecCCCCCChhHHhccc-ccCCcchHHHHHHHH-H
Q 003878 538 HPCLLYGYGGFNISVTPSFSVSRTI--------LMRHLGAVFCIANIRGGGEYGEEWHKGGA-LAKKQNCFDDFISAS-E 607 (789)
Q Consensus 538 ~P~ll~~hGg~~~~~~~~~~~~~~~--------~l~~~G~~v~~~~~RG~g~~g~~~~~~~~-~~~~~~~~~D~~~~~-~ 607 (789)
.|.||++||..+....+. ...+.. ++. ++|.|+++|+||.|..... .... ......+++|+.+.+ +
T Consensus 69 gpplvllHG~~~~~~~~~-~~~~~~~l~~~~~~l~~-~~~~Via~Dl~GhG~S~~p--~~~~~~~~~~~~~~~~a~~~~~ 144 (360)
T PRK06489 69 DNAVLVLHGTGGSGKSFL-SPTFAGELFGPGQPLDA-SKYFIILPDGIGHGKSSKP--SDGLRAAFPRYDYDDMVEAQYR 144 (360)
T ss_pred CCeEEEeCCCCCchhhhc-cchhHHHhcCCCCcccc-cCCEEEEeCCCCCCCCCCC--CcCCCCCCCcccHHHHHHHHHH
Confidence 588999999876543321 111211 224 7899999999998753210 0000 001124567776544 3
Q ss_pred HHHHcCCCCCCcEE-EEeeChHHHHHHHHHHhCCCceeEEEecCC
Q 003878 608 YLISAGYTQSRKLC-IEGGSNGGLLVGACINQRPDLFGCALAHVG 651 (789)
Q Consensus 608 ~L~~~~~~d~~~i~-i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p 651 (789)
.+.+. ..-+++. ++|+|+||.+++.++.++|++++++|+.++
T Consensus 145 ~l~~~--lgi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LVLi~s 187 (360)
T PRK06489 145 LVTEG--LGVKHLRLILGTSMGGMHAWMWGEKYPDFMDALMPMAS 187 (360)
T ss_pred HHHHh--cCCCceeEEEEECHHHHHHHHHHHhCchhhheeeeecc
Confidence 34443 1224664 899999999999999999999999997755
No 103
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=99.20 E-value=1.3e-09 Score=121.49 Aligned_cols=107 Identities=13% Similarity=0.025 Sum_probs=68.6
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHH-HHHHHcCC
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISAS-EYLISAGY 614 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~-~~L~~~~~ 614 (789)
+..|.||++||..+.. ..|... ...|. ++|.|+++|+||.|...+.-.. ........+.+++.+ +++...
T Consensus 103 ~~~p~vvllHG~~~~~--~~~~~~-~~~L~-~~~~vi~~D~rG~G~S~~~~~~---~~~~~~~~~~~~~~i~~~~~~l-- 173 (402)
T PLN02894 103 EDAPTLVMVHGYGASQ--GFFFRN-FDALA-SRFRVIAIDQLGWGGSSRPDFT---CKSTEETEAWFIDSFEEWRKAK-- 173 (402)
T ss_pred CCCCEEEEECCCCcch--hHHHHH-HHHHH-hCCEEEEECCCCCCCCCCCCcc---cccHHHHHHHHHHHHHHHHHHc--
Confidence 3568999999975432 223333 34455 5799999999998764321000 000001112233333 333333
Q ss_pred CCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 615 TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 615 ~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
+.+++.++|||+||++++.++.++|++++++|+..|.
T Consensus 174 -~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~ 210 (402)
T PLN02894 174 -NLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPA 210 (402)
T ss_pred -CCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCc
Confidence 4468999999999999999999999999998887654
No 104
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.19 E-value=5.9e-10 Score=122.39 Aligned_cols=129 Identities=13% Similarity=0.073 Sum_probs=82.5
Q ss_pred CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCC---------CCCHHH---HHHHHcCCeEEEEEeecC--CCCC
Q 003878 517 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTP---------SFSVSR---TILMRHLGAVFCIANIRG--GGEY 582 (789)
Q Consensus 517 dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~---------~~~~~~---~~~l~~~G~~v~~~~~RG--~g~~ 582 (789)
+| .+|.+..+-+.+ .+..|.||++||-.++.... .|.... ..++. ++|.|+++|.|| +|..
T Consensus 14 ~~-~~~~y~~~g~~~---~~~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~-~~~~vi~~D~~G~~~g~s 88 (351)
T TIGR01392 14 SD-VRVAYETYGTLN---AERSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDT-DRYFVVCSNVLGGCYGST 88 (351)
T ss_pred CC-ceEEEEeccccC---CCCCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCC-CceEEEEecCCCCCCCCC
Confidence 45 666555543322 12347899999976644221 122211 13334 899999999999 4443
Q ss_pred Ch-hHHhcccc---cCCcchHHHHHHHHHHHHHcCCCCCCc-EEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 583 GE-EWHKGGAL---AKKQNCFDDFISASEYLISAGYTQSRK-LCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 583 g~-~~~~~~~~---~~~~~~~~D~~~~~~~L~~~~~~d~~~-i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
+. .+...+.. .....+++|+.+.+..+++.- .-++ +.++|+|+||.++..++.++|++++++|+..+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~ 161 (351)
T TIGR01392 89 GPSSINPGGRPYGSDFPLITIRDDVKAQKLLLDHL--GIEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATS 161 (351)
T ss_pred CCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHc--CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEccC
Confidence 32 22222111 112356788877777766652 3357 999999999999999999999999999887654
No 105
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.15 E-value=6.4e-10 Score=123.22 Aligned_cols=113 Identities=18% Similarity=0.130 Sum_probs=74.5
Q ss_pred CccEEEEEcCCCCccCCCC-----------CCHHH---HHHHHcCCeEEEEEeecCC--CCCChhHHhc--ccc---cCC
Q 003878 537 SHPCLLYGYGGFNISVTPS-----------FSVSR---TILMRHLGAVFCIANIRGG--GEYGEEWHKG--GAL---AKK 595 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~~~~-----------~~~~~---~~~l~~~G~~v~~~~~RG~--g~~g~~~~~~--~~~---~~~ 595 (789)
..|.||++||..+...... |...+ ..++. .+|.|+++|.+|+ +..+...... +.. ...
T Consensus 47 ~~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~-~~~~vi~~Dl~G~~~~s~~~~~~~~~~~~~~~~~~~ 125 (379)
T PRK00175 47 RSNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDT-DRYFVICSNVLGGCKGSTGPSSINPDTGKPYGSDFP 125 (379)
T ss_pred CCCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCc-cceEEEeccCCCCCCCCCCCCCCCCCCCCcccCCCC
Confidence 3689999999877654211 22211 12334 7999999999983 2222211000 000 011
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCc-EEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 596 QNCFDDFISASEYLISAGYTQSRK-LCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 596 ~~~~~D~~~~~~~L~~~~~~d~~~-i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
..+++|+.+.+..+++.- .-++ ..++|+|+||.+++.++.++|++++++|+..+.
T Consensus 126 ~~~~~~~~~~~~~~l~~l--~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~ 181 (379)
T PRK00175 126 VITIRDWVRAQARLLDAL--GITRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASS 181 (379)
T ss_pred cCCHHHHHHHHHHHHHHh--CCCCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCC
Confidence 356888888777777652 3356 589999999999999999999999999987653
No 106
>PRK07581 hypothetical protein; Validated
Probab=99.15 E-value=3.7e-10 Score=123.39 Aligned_cols=112 Identities=15% Similarity=0.107 Sum_probs=66.8
Q ss_pred CccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhccc---ccCCcchH-HHHHHHHHHHHH-
Q 003878 537 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGA---LAKKQNCF-DDFISASEYLIS- 611 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~---~~~~~~~~-~D~~~~~~~L~~- 611 (789)
+.|+||+.||..+....+.+.......+...+|.|+++|.||.|........... ......++ +|+.+....|.+
T Consensus 40 ~~~~vll~~~~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 119 (339)
T PRK07581 40 KDNAILYPTWYSGTHQDNEWLIGPGRALDPEKYFIIIPNMFGNGLSSSPSNTPAPFNAARFPHVTIYDNVRAQHRLLTEK 119 (339)
T ss_pred CCCEEEEeCCCCCCcccchhhccCCCccCcCceEEEEecCCCCCCCCCCCCCCCCCCCCCCCceeHHHHHHHHHHHHHHH
Confidence 4577777777654433322110000134347899999999998864322110000 00011123 444443444554
Q ss_pred cCCCCCCcE-EEEeeChHHHHHHHHHHhCCCceeEEEecCC
Q 003878 612 AGYTQSRKL-CIEGGSNGGLLVGACINQRPDLFGCALAHVG 651 (789)
Q Consensus 612 ~~~~d~~~i-~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p 651 (789)
.+. +++ .++|+|+||+++..++.++|++++++|+.++
T Consensus 120 lgi---~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvli~~ 157 (339)
T PRK07581 120 FGI---ERLALVVGWSMGAQQTYHWAVRYPDMVERAAPIAG 157 (339)
T ss_pred hCC---CceEEEEEeCHHHHHHHHHHHHCHHHHhhheeeec
Confidence 343 584 7899999999999999999999999887754
No 107
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=99.15 E-value=6.2e-11 Score=123.65 Aligned_cols=137 Identities=17% Similarity=0.218 Sum_probs=90.6
Q ss_pred CceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCC----eEEEEEeecCCCCCChhHHhc----
Q 003878 518 GSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLG----AVFCIANIRGGGEYGEEWHKG---- 589 (789)
Q Consensus 518 g~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G----~~v~~~~~RG~g~~g~~~~~~---- 589 (789)
| ..+.++++.|++....++.|+|++.||................+++ .| .++++++.-+.+.....|+..
T Consensus 5 g-~~~~~~VylP~~y~~~~~~PvlylldG~~~~~~~~~~~~~~~~~~~-~~~~~~~iiV~i~~~~~~~~~~~~~~~~~~~ 82 (251)
T PF00756_consen 5 G-RDRRVWVYLPPGYDPSKPYPVLYLLDGQSGWFRNGNAQEALDRLIA-EGKIPPMIIVVIPNGDNSRFYTSWYLPAGSS 82 (251)
T ss_dssp T-EEEEEEEEECTTGGTTTTEEEEEEESHTTHHHHHHHHHHHHHHHHH-HHTSEEEEEEEEESSSTSSTTSBTTSSBCTT
T ss_pred C-CeEEEEEEECCCCCCCCCCEEEEEccCCccccccchHHHHHHHHHH-hCCCCceEEEEEecccccccccccccccccc
Confidence 5 7889999999998778899999999995110000011111223444 44 455555554433233344422
Q ss_pred --ccccCCcchHHHHH--HHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccc
Q 003878 590 --GALAKKQNCFDDFI--SASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDML 656 (789)
Q Consensus 590 --~~~~~~~~~~~D~~--~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~ 656 (789)
.....+...+.+++ +.+.++.++--+++++.+|+|+|+||+.++.++.++||+|.++++.+|.++..
T Consensus 83 ~~~~~~~~~~~~~~~l~~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~~~~ 153 (251)
T PF00756_consen 83 RRADDSGGGDAYETFLTEELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGALDPS 153 (251)
T ss_dssp CBCTSTTTHHHHHHHHHTHHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEESETT
T ss_pred cccccCCCCcccceehhccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCcccccc
Confidence 11122233455554 35666666666677779999999999999999999999999999999988764
No 108
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=99.15 E-value=3.3e-09 Score=117.48 Aligned_cols=218 Identities=15% Similarity=0.103 Sum_probs=131.4
Q ss_pred EEEEEecC-CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCe----EEEEEeecCCCCCC
Q 003878 509 HQVFVPSK-DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGA----VFCIANIRGGGEYG 583 (789)
Q Consensus 509 ~~~~~~s~-dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~----~v~~~~~RG~g~~g 583 (789)
+.+.+.|. -| .+..+++|.|.+.. .+++|+|++.||.........+ .....+++ .|. +++.+|.-.+....
T Consensus 181 ~~~~~~S~~Lg-~~r~v~VY~P~~y~-~~~~PvlyllDG~~w~~~~~~~-~~ld~li~-~g~i~P~ivV~id~~~~~~R~ 256 (411)
T PRK10439 181 KEIIWKSERLG-NSRRVWIYTTGDAA-PEERPLAILLDGQFWAESMPVW-PALDSLTH-RGQLPPAVYLLIDAIDTTHRS 256 (411)
T ss_pred EEEEEEccccC-CceEEEEEECCCCC-CCCCCEEEEEECHHhhhcCCHH-HHHHHHHH-cCCCCceEEEEECCCCccccc
Confidence 44555553 46 77889999999865 5689999999997654322222 22344555 673 46677642211111
Q ss_pred hhHHhcccccCCcchHHHHH--HHHHHHHHc--CCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccc
Q 003878 584 EEWHKGGALAKKQNCFDDFI--SASEYLISA--GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH 659 (789)
Q Consensus 584 ~~~~~~~~~~~~~~~~~D~~--~~~~~L~~~--~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~ 659 (789)
.+ ......|.+++ +.+-++.++ -..|+++.+|+|.|+||+.++.++.++|++|.++++.+|-+-+..
T Consensus 257 ~e-------l~~~~~f~~~l~~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs~ww~~-- 327 (411)
T PRK10439 257 QE-------LPCNADFWLAVQQELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGSFWWPH-- 327 (411)
T ss_pred cc-------CCchHHHHHHHHHHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEEeccceecCC--
Confidence 00 01122343332 223343333 135889999999999999999999999999999999998542110
Q ss_pred cccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccC
Q 003878 660 KFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTS 739 (789)
Q Consensus 660 ~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~ 739 (789)
..+. ......+.+.+. .... ....++|.+|..|... .....++.+.|+++
T Consensus 328 ----------~~~~-~~~~l~~~l~~~----~~~~----------~~lr~~i~~G~~E~~~-~~~~~~l~~~L~~~---- 377 (411)
T PRK10439 328 ----------RGGQ-QEGVLLEQLKAG----EVSA----------RGLRIVLEAGRREPMI-MRANQALYAQLHPA---- 377 (411)
T ss_pred ----------ccCC-chhHHHHHHHhc----ccCC----------CCceEEEeCCCCCchH-HHHHHHHHHHHHHC----
Confidence 0000 000111112220 0111 1346889999988643 56778999999998
Q ss_pred CCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHH
Q 003878 740 LENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780 (789)
Q Consensus 740 ~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 780 (789)
|.++.+.++++ ||.... ....+.+.+.||.
T Consensus 378 ------G~~~~~~~~~G-GHd~~~----Wr~~L~~~L~~l~ 407 (411)
T PRK10439 378 ------GHSVFWRQVDG-GHDALC----WRGGLIQGLIDLW 407 (411)
T ss_pred ------CCcEEEEECCC-CcCHHH----HHHHHHHHHHHHh
Confidence 99999999976 796421 2234445555553
No 109
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=99.15 E-value=1.4e-09 Score=119.33 Aligned_cols=122 Identities=12% Similarity=0.078 Sum_probs=79.1
Q ss_pred EEEEEEecCCCCCCCCccEEEEEcCCCCccCC---CCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcch
Q 003878 522 IPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT---PSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNC 598 (789)
Q Consensus 522 i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~---~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~ 598 (789)
+.++.+.|... ...+.| ||++||-...... .... .....|.++||.|+++|+||.|.... ......
T Consensus 48 ~~l~~~~~~~~-~~~~~p-vl~v~~~~~~~~~~d~~~~~-~~~~~L~~~G~~V~~~D~~g~g~s~~--------~~~~~d 116 (350)
T TIGR01836 48 VVLYRYTPVKD-NTHKTP-LLIVYALVNRPYMLDLQEDR-SLVRGLLERGQDVYLIDWGYPDRADR--------YLTLDD 116 (350)
T ss_pred EEEEEecCCCC-cCCCCc-EEEeccccccceeccCCCCc-hHHHHHHHCCCeEEEEeCCCCCHHHh--------cCCHHH
Confidence 44444555431 122345 7788874221111 1112 23455555999999999998653211 111112
Q ss_pred H--HHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccc
Q 003878 599 F--DDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDML 656 (789)
Q Consensus 599 ~--~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~ 656 (789)
+ +|+.++++++.++. ..+++.++|||+||.+++.++..+|+.++++|+.+|.+++.
T Consensus 117 ~~~~~~~~~v~~l~~~~--~~~~i~lvGhS~GG~i~~~~~~~~~~~v~~lv~~~~p~~~~ 174 (350)
T TIGR01836 117 YINGYIDKCVDYICRTS--KLDQISLLGICQGGTFSLCYAALYPDKIKNLVTMVTPVDFE 174 (350)
T ss_pred HHHHHHHHHHHHHHHHh--CCCcccEEEECHHHHHHHHHHHhCchheeeEEEeccccccC
Confidence 2 45778899988763 34689999999999999999999999999999998887753
No 110
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.14 E-value=5.9e-08 Score=103.82 Aligned_cols=267 Identities=15% Similarity=0.156 Sum_probs=157.2
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCc-eecccccccccccccCccceeeeeecccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI-VEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYL 208 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 208 (789)
+..++.-..+||.|-|+| +|.....++|||....+ .+..++.-.. |
T Consensus 58 H~~~vtVAkySPsG~yiA-----SGD~sG~vRIWdtt~~~hiLKnef~v~a----------------------G------ 104 (603)
T KOG0318|consen 58 HAHQVTVAKYSPSGFYIA-----SGDVSGKVRIWDTTQKEHILKNEFQVLA----------------------G------ 104 (603)
T ss_pred ccceeEEEEeCCCceEEe-----ecCCcCcEEEEeccCcceeeeeeeeecc----------------------c------
Confidence 445666778999999999 78888899999987643 3322222221 1
Q ss_pred ccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCC--CCCC----cccc--------CCcc
Q 003878 209 RGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKD--MDAG----TETD--------SNLY 274 (789)
Q Consensus 209 ~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~--~~~~----~~~~--------~~~~ 274 (789)
+...+.|+.||++|+.+......-..- +|.| +.+. .-++
T Consensus 105 ---------------------------~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~Kp 157 (603)
T KOG0318|consen 105 ---------------------------PIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKP 157 (603)
T ss_pred ---------------------------ccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccC
Confidence 457899999999999875432110000 1111 1110 0011
Q ss_pred cEEEEEECCCCCCCcEEEEecC---------CCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccc
Q 003878 275 HEFYYHFLGTKQSEDILCWKDP---------EHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKK 345 (789)
Q Consensus 275 ~~i~~~~lg~~~~~~~~~~~~~---------~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~ 345 (789)
.+=+|.--+.+ ..-+-+|++| +|..++..+.+||||++++-...+ ..++++|-.+|+.
T Consensus 158 sRPfRi~T~sd-Dn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsD-----gki~iyDGktge~------- 224 (603)
T KOG0318|consen 158 SRPFRIATGSD-DNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSD-----GKIYIYDGKTGEK------- 224 (603)
T ss_pred CCceEEEeccC-CCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCC-----ccEEEEcCCCccE-------
Confidence 11122111111 1124456665 345566788999999988765443 4589999877531
Q ss_pred cCCCCccEeee---ccccceeEE-EecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCC-CCceeeeEEEecCCEE
Q 003878 346 RDGLLPFVKLI---DGFDAQYEV-IANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEA-ERDVLESATAVNLNQM 420 (789)
Q Consensus 346 ~~~~~~~~~l~---~~~~~~~~~-~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~-~~~~i~~v~~~~~~~l 420 (789)
+-.+. ..-+..|.. |+||+++|+-.+. +..+-.||+.+.+-.+++.-.. -+...-+..|.+ ++|
T Consensus 225 ------vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa----Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqk-d~l 293 (603)
T KOG0318|consen 225 ------VGELEDSDAHKGSIFALSWSPDSTQFLTVSA----DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQK-DHL 293 (603)
T ss_pred ------EEEecCCCCccccEEEEEECCCCceEEEecC----CceEEEEEeeccceEEEeecCCchhceEEEEEEeC-CeE
Confidence 11221 111223433 9999999875432 2456667777665223333222 123344677876 677
Q ss_pred EEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 421 IVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 421 v~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
+.... +| .|-.+++.+++.++.+..+.-.|..++.++|++.++ |-.--+.|-.|+..+|+
T Consensus 294 ItVSl-~G--~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~----SgsyDG~I~~W~~~~g~ 353 (603)
T KOG0318|consen 294 ITVSL-SG--TINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIY----SGSYDGHINSWDSGSGT 353 (603)
T ss_pred EEEEc-Cc--EEEEecccCCChhheecccccceeEEEEcCCCCEEE----eeccCceEEEEecCCcc
Confidence 65444 33 577788887776666666677788899999997655 33456788888888774
No 111
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.14 E-value=6.2e-09 Score=107.05 Aligned_cols=242 Identities=15% Similarity=0.046 Sum_probs=138.2
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
-.+-.+++||||++|| .|+...++++||+.|...+. +..+..
T Consensus 116 e~Vl~~~fsp~g~~l~-----tGsGD~TvR~WD~~TeTp~~-t~KgH~-------------------------------- 157 (480)
T KOG0271|consen 116 EAVLSVQFSPTGSRLV-----TGSGDTTVRLWDLDTETPLF-TCKGHK-------------------------------- 157 (480)
T ss_pred CcEEEEEecCCCceEE-----ecCCCceEEeeccCCCCcce-eecCCc--------------------------------
Confidence 4567889999999999 67778999999999985442 112110
Q ss_pred eeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEE
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL 291 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~ 291 (789)
-| +..++|||||+.|+-...+ ..|.+|+..+++..-.
T Consensus 158 ----------------~W-------VlcvawsPDgk~iASG~~d-------------------g~I~lwdpktg~~~g~- 194 (480)
T KOG0271|consen 158 ----------------NW-------VLCVAWSPDGKKIASGSKD-------------------GSIRLWDPKTGQQIGR- 194 (480)
T ss_pred ----------------cE-------EEEEEECCCcchhhccccC-------------------CeEEEecCCCCCcccc-
Confidence 01 3789999999999854433 3577887655543211
Q ss_pred EEecCCCCeeEEEEEE-----ecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEE-
Q 003878 292 CWKDPEHPKYIFSGHV-----TEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEV- 365 (789)
Q Consensus 292 ~~~~~~~~~~~~~~~~-----SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 365 (789)
..+.+..++.+++| .|.+++|+-.+. .+.+.++|+..+ .....+..........
T Consensus 195 --~l~gH~K~It~Lawep~hl~p~~r~las~sk-----Dg~vrIWd~~~~-------------~~~~~lsgHT~~VTCvr 254 (480)
T KOG0271|consen 195 --ALRGHKKWITALAWEPLHLVPPCRRLASSSK-----DGSVRIWDTKLG-------------TCVRTLSGHTASVTCVR 254 (480)
T ss_pred --cccCcccceeEEeecccccCCCccceecccC-----CCCEEEEEccCc-------------eEEEEeccCccceEEEE
Confidence 12234555666665 568887764442 345777887653 1222333222212222
Q ss_pred EecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEe-------------c----------------
Q 003878 366 IANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAV-------------N---------------- 416 (789)
Q Consensus 366 ~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~-------------~---------------- 416 (789)
|. |+-+.+.... +..|-+++...+.-.+++-.|. ..+..++++ +
T Consensus 255 wG--G~gliySgS~---DrtIkvw~a~dG~~~r~lkGHa--hwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~r 327 (480)
T KOG0271|consen 255 WG--GEGLIYSGSQ---DRTIKVWRALDGKLCRELKGHA--HWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALER 327 (480)
T ss_pred Ec--CCceEEecCC---CceEEEEEccchhHHHhhcccc--hheeeeeccchhhhhccccccccccCCChHHHHHHHHHH
Confidence 43 3334443333 2345555544432112222222 112222221 1
Q ss_pred -------CCEEEEEEEeCCeEEEEEEECCCC-ceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 417 -------LNQMIVSYLSDVKYVLQIRDLKNG-SLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 417 -------~~~lv~~~~~~g~~~L~~~dl~tG-~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
....+++.+++. .|++|+.... +.+.+.+.+...|..+++|||+..++ ..||.. .+.+||..+|+
T Consensus 328 Y~~~~~~~~erlVSgsDd~--tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IA--SaSFDk--SVkLW~g~tGk 400 (480)
T KOG0271|consen 328 YEAVLKDSGERLVSGSDDF--TLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIA--SASFDK--SVKLWDGRTGK 400 (480)
T ss_pred HHHhhccCcceeEEecCCc--eEEEecccccccchhhhhchhhheeeEEECCCccEEE--Eeeccc--ceeeeeCCCcc
Confidence 012467777776 7899987522 34445565666788899999998554 345544 77788888886
No 112
>PRK10349 carboxylesterase BioH; Provisional
Probab=99.14 E-value=1.1e-09 Score=114.54 Aligned_cols=94 Identities=13% Similarity=0.057 Sum_probs=66.9
Q ss_pred cEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCC
Q 003878 539 PCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSR 618 (789)
Q Consensus 539 P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~ 618 (789)
|.||++||..+.. ..|.. ....|. ..|.|+++|.||.|.... ....+++++.+ .+++.+ .+
T Consensus 14 ~~ivllHG~~~~~--~~w~~-~~~~L~-~~~~vi~~Dl~G~G~S~~---------~~~~~~~~~~~---~l~~~~---~~ 74 (256)
T PRK10349 14 VHLVLLHGWGLNA--EVWRC-IDEELS-SHFTLHLVDLPGFGRSRG---------FGALSLADMAE---AVLQQA---PD 74 (256)
T ss_pred CeEEEECCCCCCh--hHHHH-HHHHHh-cCCEEEEecCCCCCCCCC---------CCCCCHHHHHH---HHHhcC---CC
Confidence 5699999965443 24444 345566 679999999999875321 11234444433 444432 46
Q ss_pred cEEEEeeChHHHHHHHHHHhCCCceeEEEecCC
Q 003878 619 KLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 651 (789)
Q Consensus 619 ~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p 651 (789)
++.++|||+||.++..++.++|++++.+|+..+
T Consensus 75 ~~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~ 107 (256)
T PRK10349 75 KAIWLGWSLGGLVASQIALTHPERVQALVTVAS 107 (256)
T ss_pred CeEEEEECHHHHHHHHHHHhChHhhheEEEecC
Confidence 899999999999999999999999999987655
No 113
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.12 E-value=1.7e-07 Score=99.74 Aligned_cols=244 Identities=12% Similarity=0.026 Sum_probs=143.6
Q ss_pred EEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccccee
Q 003878 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFF 213 (789)
Q Consensus 134 ~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 213 (789)
+..+.+||||+.++.+.. ....|++||+.+++.+.. +....
T Consensus 33 ~~~l~~~~dg~~l~~~~~----~~~~v~~~d~~~~~~~~~-~~~~~---------------------------------- 73 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCAS----DSDTIQVIDLATGEVIGT-LPSGP---------------------------------- 73 (300)
T ss_pred CCceEECCCCCEEEEEEC----CCCeEEEEECCCCcEEEe-ccCCC----------------------------------
Confidence 346789999998754432 234799999999866531 11110
Q ss_pred eEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEE
Q 003878 214 FFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCW 293 (789)
Q Consensus 214 ~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~ 293 (789)
....++|+|||+.++++.. ....++++++.+.. .+..+
T Consensus 74 ----------------------~~~~~~~~~~g~~l~~~~~------------------~~~~l~~~d~~~~~--~~~~~ 111 (300)
T TIGR03866 74 ----------------------DPELFALHPNGKILYIANE------------------DDNLVTVIDIETRK--VLAEI 111 (300)
T ss_pred ----------------------CccEEEECCCCCEEEEEcC------------------CCCeEEEEECCCCe--EEeEe
Confidence 1356889999998876532 12358888887532 12222
Q ss_pred ecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEE
Q 003878 294 KDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVF 373 (789)
Q Consensus 294 ~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l 373 (789)
+... ....+.++|||+++++.... ...++.+|..++. .......+.......|+++|+.|
T Consensus 112 ~~~~---~~~~~~~~~dg~~l~~~~~~----~~~~~~~d~~~~~-------------~~~~~~~~~~~~~~~~s~dg~~l 171 (300)
T TIGR03866 112 PVGV---EPEGMAVSPDGKIVVNTSET----TNMAHFIDTKTYE-------------IVDNVLVDQRPRFAEFTADGKEL 171 (300)
T ss_pred eCCC---CcceEEECCCCCEEEEEecC----CCeEEEEeCCCCe-------------EEEEEEcCCCccEEEECCCCCEE
Confidence 2111 12468899999999876532 2346667876531 11111111122334589999988
Q ss_pred EEEECCCCCCceEEEEECCCCCCeEEeccCCC-----CceeeeEEEecCCE-EEEEEEeCCeEEEEEEECCCCceeeecc
Q 003878 374 TFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAE-----RDVLESATAVNLNQ-MIVSYLSDVKYVLQIRDLKNGSLLHQLP 447 (789)
Q Consensus 374 ~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~-----~~~i~~v~~~~~~~-lv~~~~~~g~~~L~~~dl~tG~~~~~l~ 447 (789)
++.+.. ...|..+|+++++....+..+.. .....++.+++++. +++....+ .+|.+||+++++....+.
T Consensus 172 ~~~~~~---~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~--~~i~v~d~~~~~~~~~~~ 246 (300)
T TIGR03866 172 WVSSEI---GGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA--NRVAVVDAKTYEVLDYLL 246 (300)
T ss_pred EEEcCC---CCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC--CeEEEEECCCCcEEEEEE
Confidence 765432 35789999987652222211110 11123566776544 44433333 368999998777644443
Q ss_pred cCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 448 IEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 448 ~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
.. ..+..++++|+++.++.+. ..-+.+..||+.+++
T Consensus 247 ~~-~~~~~~~~~~~g~~l~~~~---~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 247 VG-QRVWQLAFTPDEKYLLTTN---GVSNDVSVIDVAALK 282 (300)
T ss_pred eC-CCcceEEECCCCCEEEEEc---CCCCeEEEEECCCCc
Confidence 22 2355678899999776532 234579999999885
No 114
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=99.11 E-value=5.6e-09 Score=111.70 Aligned_cols=241 Identities=15% Similarity=0.075 Sum_probs=150.6
Q ss_pred cEEEEEEecCCCceEEEEEEEecCCCC---CCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCC
Q 003878 507 HVHQVFVPSKDGSTKIPMFIVSKKNIK---LDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYG 583 (789)
Q Consensus 507 ~~~~~~~~s~dg~~~i~~~l~~p~~~~---~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g 583 (789)
..++..++.+|| -.+..-++.+.+.. ..+..|++|++||-.|.+....-.. ....+.++||.+++.|.||.++--
T Consensus 92 ~y~Reii~~~DG-G~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S~~~YVr~-lv~~a~~~G~r~VVfN~RG~~g~~ 169 (409)
T KOG1838|consen 92 EYTREIIKTSDG-GTVTLDWVENPDSRCRTDDGTDPIVVILPGLTGGSHESYVRH-LVHEAQRKGYRVVVFNHRGLGGSK 169 (409)
T ss_pred cceeEEEEeCCC-CEEEEeeccCcccccCCCCCCCcEEEEecCCCCCChhHHHHH-HHHHHHhCCcEEEEECCCCCCCCc
Confidence 335555666788 78888777665531 1357799999999888776644333 334445599999999999954311
Q ss_pred hhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC---CceeEEEecCCcccc--ccc
Q 003878 584 EEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRP---DLFGCALAHVGVMDM--LRY 658 (789)
Q Consensus 584 ~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p---d~f~a~v~~~p~~d~--~~~ 658 (789)
- -.....-...-+|+.++++++.++ +-+ .++.++|.|+||.+....+.+.- .+.+|++..+|+--. .+.
T Consensus 170 L----tTpr~f~ag~t~Dl~~~v~~i~~~-~P~-a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pwd~~~~~~~ 243 (409)
T KOG1838|consen 170 L----TTPRLFTAGWTEDLREVVNHIKKR-YPQ-APLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPWDLLAASRS 243 (409)
T ss_pred c----CCCceeecCCHHHHHHHHHHHHHh-CCC-CceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccchhhhhhhH
Confidence 0 001111122348999999999987 333 37999999999999999888753 377888888886421 000
Q ss_pred c-------------------------c--ccCCcc------------ch-----hhcCCCCcHHHHHHHHhcCcccCCCC
Q 003878 659 H-------------------------K--FTIGHA------------WV-----SDFGCSEEEEEFYWLIKYSPLHNVRR 694 (789)
Q Consensus 659 ~-------------------------~--~~~~~~------------~~-----~e~g~p~~~~~~~~l~~~sP~~~v~~ 694 (789)
. . +..... +. ..||-+. .-+++++-|+...+++
T Consensus 244 ~~~~~~~~~y~~~l~~~l~~~~~~~r~~~~~~~vd~d~~~~~~SvreFD~~~t~~~~gf~~---~deYY~~aSs~~~v~~ 320 (409)
T KOG1838|consen 244 IETPLYRRFYNRALTLNLKRIVLRHRHTLFEDPVDFDVILKSRSVREFDEALTRPMFGFKS---VDEYYKKASSSNYVDK 320 (409)
T ss_pred HhcccchHHHHHHHHHhHHHHHhhhhhhhhhccchhhhhhhcCcHHHHHhhhhhhhcCCCc---HHHHHhhcchhhhccc
Confidence 0 0 000000 00 0123333 2245788899999999
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcC-CCCch--hhHHHH
Q 003878 695 PWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHG-VGLPT--QKMIDE 771 (789)
Q Consensus 695 ~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~-~~~~~--~~~~~~ 771 (789)
+ ..|+|++++.+|+.||.. +.-.-+..+ +.-+.+.+-..+||- +.... .. .-+
T Consensus 321 I----------~VP~L~ina~DDPv~p~~-~ip~~~~~~------------np~v~l~~T~~GGHlgfleg~~p~~-~~w 376 (409)
T KOG1838|consen 321 I----------KVPLLCINAADDPVVPEE-AIPIDDIKS------------NPNVLLVITSHGGHLGFLEGLWPSA-RTW 376 (409)
T ss_pred c----------cccEEEEecCCCCCCCcc-cCCHHHHhc------------CCcEEEEEeCCCceeeeeccCCCcc-chh
Confidence 8 899999999999999875 222222222 335677777889994 32221 21 233
Q ss_pred HHH-HHHHHHHH
Q 003878 772 AAD-RYGFMAKM 782 (789)
Q Consensus 772 ~~~-~~~fl~~~ 782 (789)
+.+ ..+|+...
T Consensus 377 ~~~~l~ef~~~~ 388 (409)
T KOG1838|consen 377 MDKLLVEFLGNA 388 (409)
T ss_pred HHHHHHHHHHHH
Confidence 444 66666554
No 115
>PLN02578 hydrolase
Probab=99.11 E-value=1.7e-09 Score=118.86 Aligned_cols=98 Identities=10% Similarity=-0.027 Sum_probs=65.6
Q ss_pred cEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcch-HHHHHHHHHHHHHcCCCCC
Q 003878 539 PCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNC-FDDFISASEYLISAGYTQS 617 (789)
Q Consensus 539 P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~-~~D~~~~~~~L~~~~~~d~ 617 (789)
|.||++||..+.. ..|.. ....|+ ++|.|+++|+||.|....... ...... .+|+.+.++.+. .
T Consensus 87 ~~vvliHG~~~~~--~~w~~-~~~~l~-~~~~v~~~D~~G~G~S~~~~~-----~~~~~~~a~~l~~~i~~~~------~ 151 (354)
T PLN02578 87 LPIVLIHGFGASA--FHWRY-NIPELA-KKYKVYALDLLGFGWSDKALI-----EYDAMVWRDQVADFVKEVV------K 151 (354)
T ss_pred CeEEEECCCCCCH--HHHHH-HHHHHh-cCCEEEEECCCCCCCCCCccc-----ccCHHHHHHHHHHHHHHhc------c
Confidence 5578999965542 22332 234566 689999999999886543210 111111 134444444432 3
Q ss_pred CcEEEEeeChHHHHHHHHHHhCCCceeEEEecCC
Q 003878 618 RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 651 (789)
Q Consensus 618 ~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p 651 (789)
+++.++|||+||+++..++.++|++++++|+..+
T Consensus 152 ~~~~lvG~S~Gg~ia~~~A~~~p~~v~~lvLv~~ 185 (354)
T PLN02578 152 EPAVLVGNSLGGFTALSTAVGYPELVAGVALLNS 185 (354)
T ss_pred CCeEEEEECHHHHHHHHHHHhChHhcceEEEECC
Confidence 5799999999999999999999999999987654
No 116
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=99.10 E-value=9.8e-09 Score=106.24 Aligned_cols=117 Identities=14% Similarity=0.103 Sum_probs=78.9
Q ss_pred cCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccC
Q 003878 515 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAK 594 (789)
Q Consensus 515 s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~ 594 (789)
.-+| .+++...- + .+..|++|++||-+....++.+.. ..|+.+||.|+++|.||.|.... ....
T Consensus 28 ~~~g-I~~h~~e~---g---~~~gP~illlHGfPe~wyswr~q~---~~la~~~~rviA~DlrGyG~Sd~------P~~~ 91 (322)
T KOG4178|consen 28 TYKG-IRLHYVEG---G---PGDGPIVLLLHGFPESWYSWRHQI---PGLASRGYRVIAPDLRGYGFSDA------PPHI 91 (322)
T ss_pred EEcc-EEEEEEee---c---CCCCCEEEEEccCCccchhhhhhh---hhhhhcceEEEecCCCCCCCCCC------CCCc
Confidence 3456 55544333 2 356799999999988766666543 44566999999999999775321 1111
Q ss_pred CcchHHHHHHHHHHHHHc-CCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecC
Q 003878 595 KQNCFDDFISASEYLISA-GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHV 650 (789)
Q Consensus 595 ~~~~~~D~~~~~~~L~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~ 650 (789)
-.-++.-+..-+..|++. | -+|+.+.||++|++++..++.++|++..+.|+..
T Consensus 92 ~~Yt~~~l~~di~~lld~Lg---~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~n 145 (322)
T KOG4178|consen 92 SEYTIDELVGDIVALLDHLG---LKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLN 145 (322)
T ss_pred ceeeHHHHHHHHHHHHHHhc---cceeEEEeccchhHHHHHHHHhChhhcceEEEec
Confidence 122333333333333332 3 3699999999999999999999999999998763
No 117
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.10 E-value=4.7e-08 Score=97.10 Aligned_cols=232 Identities=13% Similarity=0.139 Sum_probs=141.8
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
+...+..+.+|+||++.. +++-..++++||+++|+... .+.+. -.
T Consensus 62 HsH~v~dv~~s~dg~~al-----S~swD~~lrlWDl~~g~~t~-~f~GH------~~----------------------- 106 (315)
T KOG0279|consen 62 HSHFVSDVVLSSDGNFAL-----SASWDGTLRLWDLATGESTR-RFVGH------TK----------------------- 106 (315)
T ss_pred cceEecceEEccCCceEE-----eccccceEEEEEecCCcEEE-EEEec------CC-----------------------
Confidence 445688999999998754 34556699999999996543 22221 00
Q ss_pred cceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCc
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED 289 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~ 289 (789)
..-++++|||+++|+-. .+...|.+|+.-+.. .
T Consensus 107 --------------------------dVlsva~s~dn~qivSG-------------------SrDkTiklwnt~g~c--k 139 (315)
T KOG0279|consen 107 --------------------------DVLSVAFSTDNRQIVSG-------------------SRDKTIKLWNTLGVC--K 139 (315)
T ss_pred --------------------------ceEEEEecCCCceeecC-------------------CCcceeeeeeecccE--E
Confidence 35789999999999732 345567777754321 1
Q ss_pred EEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc-ceeEEEec
Q 003878 290 ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIAN 368 (789)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~ 368 (789)
..+.++. +..++.-+.|||...-..|.+. +. ...+.++|+.+-. .......... ..+..+||
T Consensus 140 ~t~~~~~-~~~WVscvrfsP~~~~p~Ivs~-s~--DktvKvWnl~~~~-------------l~~~~~gh~~~v~t~~vSp 202 (315)
T KOG0279|consen 140 YTIHEDS-HREWVSCVRFSPNESNPIIVSA-SW--DKTVKVWNLRNCQ-------------LRTTFIGHSGYVNTVTVSP 202 (315)
T ss_pred EEEecCC-CcCcEEEEEEcCCCCCcEEEEc-cC--CceEEEEccCCcc-------------hhhccccccccEEEEEECC
Confidence 2222222 2567778899999633333332 12 3457888988731 0111111111 12345899
Q ss_pred CCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeeccc
Q 003878 369 DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI 448 (789)
Q Consensus 369 dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~ 448 (789)
||..... ++..++++++|++.++....+ .+ ...+.++.++++...+...... .|.+||++++..+..+.+
T Consensus 203 DGslcas----Ggkdg~~~LwdL~~~k~lysl-~a--~~~v~sl~fspnrywL~~at~~---sIkIwdl~~~~~v~~l~~ 272 (315)
T KOG0279|consen 203 DGSLCAS----GGKDGEAMLWDLNEGKNLYSL-EA--FDIVNSLCFSPNRYWLCAATAT---SIKIWDLESKAVVEELKL 272 (315)
T ss_pred CCCEEec----CCCCceEEEEEccCCceeEec-cC--CCeEeeEEecCCceeEeeccCC---ceEEEeccchhhhhhccc
Confidence 9986652 566799999999988743322 22 3678899999943333333332 499999998776565554
Q ss_pred C-Ce--------eEEEeecccCCcEEEEEEc
Q 003878 449 E-IG--------SVNAISARREDSVVFISFT 470 (789)
Q Consensus 449 ~-~~--------~v~~~s~s~d~~~l~~~~s 470 (789)
. .+ ...+++++.||..++--++
T Consensus 273 d~~g~s~~~~~~~clslaws~dG~tLf~g~t 303 (315)
T KOG0279|consen 273 DGIGPSSKAGDPICLSLAWSADGQTLFAGYT 303 (315)
T ss_pred cccccccccCCcEEEEEEEcCCCcEEEeeec
Confidence 3 11 1224567778877775554
No 118
>KOG3101 consensus Esterase D [General function prediction only]
Probab=99.07 E-value=6.1e-10 Score=106.05 Aligned_cols=239 Identities=14% Similarity=0.086 Sum_probs=145.3
Q ss_pred CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEe--ecCCCCCCh----------
Q 003878 517 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIAN--IRGGGEYGE---------- 584 (789)
Q Consensus 517 dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~--~RG~g~~g~---------- 584 (789)
-+ +.|..-+|.|++...+++.|+|.|.-|-.....+-.-...+.+...+.|.+|+.|| .||-.--|+
T Consensus 24 l~-c~Mtf~vylPp~a~~~k~~P~lf~LSGLTCT~~Nfi~Ksg~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG~GA 102 (283)
T KOG3101|consen 24 LK-CSMTFGVYLPPDAPRGKRCPVLFYLSGLTCTHENFIEKSGFQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFGQGA 102 (283)
T ss_pred cc-cceEEEEecCCCcccCCcCceEEEecCCcccchhhHhhhhHHHhHhhcCeEEECCCCCCCccccCCCcccccccCCc
Confidence 35 78888999999876677799999999975443321112234566677999999998 466422222
Q ss_pred hHHhccccc-CCc--chHHHHHHHHHHHHHc--CCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccc
Q 003878 585 EWHKGGALA-KKQ--NCFDDFISASEYLISA--GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH 659 (789)
Q Consensus 585 ~~~~~~~~~-~~~--~~~~D~~~~~~~L~~~--~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~ 659 (789)
.|+.....+ |+. ..++-+..-+-.++.. --+|+.+++|.||||||.-++.+..++|.+|+.+.+.+|+++...-.
T Consensus 103 GFYvnAt~epw~~~yrMYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~NP~~cp 182 (283)
T KOG3101|consen 103 GFYVNATQEPWAKHYRMYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICNPINCP 182 (283)
T ss_pred eeEEecccchHhhhhhHHHHHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccceeccccccCcccCc
Confidence 222222211 111 1122222222222221 23699999999999999999999999999999999999999864421
Q ss_pred cccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHH--HHHHHHHHHHhhc
Q 003878 660 KFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH--SLKLLATMQYVLC 737 (789)
Q Consensus 660 ~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~--~~~~~~~L~~~~~ 737 (789)
= .. ..+....|+ +++.+ .+|++-+.+++.. -..--+||-+|.+|...+ +| +..+.++.+..
T Consensus 183 W-Gq-KAf~gYLG~--~ka~W---~~yDat~lik~y~-------~~~~~ilIdqG~~D~Fl~-~qLlPe~l~~a~~~~-- 245 (283)
T KOG3101|consen 183 W-GQ-KAFTGYLGD--NKAQW---EAYDATHLIKNYR-------GVGDDILIDQGAADNFLA-EQLLPENLLEACKAT-- 245 (283)
T ss_pred c-hH-HHhhcccCC--ChHHH---hhcchHHHHHhcC-------CCCccEEEecCccchhhh-hhcChHHHHHHhhcc--
Confidence 0 00 001111233 44444 5566655555430 012248999999998876 33 55565555532
Q ss_pred cCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhC
Q 003878 738 TSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 738 ~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 784 (789)
...++.++.-++-.|..--- ...+++-.++-.+.|+
T Consensus 246 -------~~~~v~~r~~~gyDHSYyfI----aTFv~dHi~hHA~~L~ 281 (283)
T KOG3101|consen 246 -------WQAPVVFRLQEGYDHSYYFI----ATFVADHIEHHAKNLN 281 (283)
T ss_pred -------ccccEEEEeecCCCcceeee----hhhhHHHHHHHHHHhc
Confidence 36899999999999975321 2334444455555554
No 119
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=99.07 E-value=5.7e-09 Score=100.14 Aligned_cols=199 Identities=17% Similarity=0.143 Sum_probs=133.9
Q ss_pred CCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCC
Q 003878 535 DGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGY 614 (789)
Q Consensus 535 ~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~ 614 (789)
.+..-++|++|| +.+.-+.-+....+..+++.|+.++.+|++|-|+....++-. +.....+|+..+++++...
T Consensus 30 tgs~e~vvlcHG-frS~Kn~~~~~~vA~~~e~~gis~fRfDF~GnGeS~gsf~~G----n~~~eadDL~sV~q~~s~~-- 102 (269)
T KOG4667|consen 30 TGSTEIVVLCHG-FRSHKNAIIMKNVAKALEKEGISAFRFDFSGNGESEGSFYYG----NYNTEADDLHSVIQYFSNS-- 102 (269)
T ss_pred cCCceEEEEeec-cccccchHHHHHHHHHHHhcCceEEEEEecCCCCcCCccccC----cccchHHHHHHHHHHhccC--
Confidence 356789999999 444444444555677888899999999999999865554422 2233349999999998763
Q ss_pred CCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCc---cchhhcCC---C---------CcHHH
Q 003878 615 TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGH---AWVSDFGC---S---------EEEEE 679 (789)
Q Consensus 615 ~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~---~~~~e~g~---p---------~~~~~ 679 (789)
...--+|.|||-||..++..+...++ ..-+|...|-.|.......+.++ .|..+-|. + -.++.
T Consensus 103 -nr~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRydl~~~I~eRlg~~~l~~ike~Gfid~~~rkG~y~~rvt~eS 180 (269)
T KOG4667|consen 103 -NRVVPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYDLKNGINERLGEDYLERIKEQGFIDVGPRKGKYGYRVTEES 180 (269)
T ss_pred -ceEEEEEEeecCccHHHHHHHHhhcC-chheEEcccccchhcchhhhhcccHHHHHHhCCceecCcccCCcCceecHHH
Confidence 22234799999999999999999887 66677777777765554322222 12222121 1 11111
Q ss_pred H-HHHHh-cCc-ccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCC
Q 003878 680 F-YWLIK-YSP-LHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERK 756 (789)
Q Consensus 680 ~-~~l~~-~sP-~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~ 756 (789)
. +.|.. .+| ...+++ .+|+|-+||..|..||.+.|.+|++.+... .|.+.++
T Consensus 181 lmdrLntd~h~aclkId~-----------~C~VLTvhGs~D~IVPve~AkefAk~i~nH--------------~L~iIEg 235 (269)
T KOG4667|consen 181 LMDRLNTDIHEACLKIDK-----------QCRVLTVHGSEDEIVPVEDAKEFAKIIPNH--------------KLEIIEG 235 (269)
T ss_pred HHHHHhchhhhhhcCcCc-----------cCceEEEeccCCceeechhHHHHHHhccCC--------------ceEEecC
Confidence 1 11110 011 112333 689999999999999999999998887643 7899999
Q ss_pred CCcCCCCchhh
Q 003878 757 AGHGVGLPTQK 767 (789)
Q Consensus 757 ~gH~~~~~~~~ 767 (789)
+.|.+.....+
T Consensus 236 ADHnyt~~q~~ 246 (269)
T KOG4667|consen 236 ADHNYTGHQSQ 246 (269)
T ss_pred CCcCccchhhh
Confidence 99999765443
No 120
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=99.07 E-value=4.8e-10 Score=106.43 Aligned_cols=181 Identities=13% Similarity=0.126 Sum_probs=127.9
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCC
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 615 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~ 615 (789)
...|+++++||||+...+..-......-+.++||.|+.++|--+.+ ...-..++.|+...++|+.+. +-
T Consensus 65 ~~~klfIfIHGGYW~~g~rk~clsiv~~a~~~gY~vasvgY~l~~q----------~htL~qt~~~~~~gv~filk~-~~ 133 (270)
T KOG4627|consen 65 NQAKLFIFIHGGYWQEGDRKMCLSIVGPAVRRGYRVASVGYNLCPQ----------VHTLEQTMTQFTHGVNFILKY-TE 133 (270)
T ss_pred CCccEEEEEecchhhcCchhcccchhhhhhhcCeEEEEeccCcCcc----------cccHHHHHHHHHHHHHHHHHh-cc
Confidence 4679999999999887765544333333445999999998754321 122245678999999998876 44
Q ss_pred CCCcEEEEeeChHHHHHHHHHHh-CCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcc-cCCC
Q 003878 616 QSRKLCIEGGSNGGLLVGACINQ-RPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPL-HNVR 693 (789)
Q Consensus 616 d~~~i~i~G~S~GG~l~~~~~~~-~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~-~~v~ 693 (789)
..++|.+.|||+|+.|++.+.++ +.-++.+++..+|+.++.....++.+ ...|.-++. ....||. ...+
T Consensus 134 n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~l~EL~~te~g----~dlgLt~~~-----ae~~Scdl~~~~ 204 (270)
T KOG4627|consen 134 NTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYDLRELSNTESG----NDLGLTERN-----AESVSCDLWEYT 204 (270)
T ss_pred cceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhhHHHHhCCccc----cccCcccch-----hhhcCccHHHhc
Confidence 56789999999999998876654 44488899999999998665543332 122222221 1233432 2233
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcC
Q 003878 694 RPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHG 760 (789)
Q Consensus 694 ~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~ 760 (789)
.. .-++|++.+..|.---++|.+.|++.++++ .+..+++.+|.
T Consensus 205 ~v----------~~~ilVv~~~~espklieQnrdf~~q~~~a--------------~~~~f~n~~hy 247 (270)
T KOG4627|consen 205 DV----------TVWILVVAAEHESPKLIEQNRDFADQLRKA--------------SFTLFKNYDHY 247 (270)
T ss_pred Cc----------eeeeeEeeecccCcHHHHhhhhHHHHhhhc--------------ceeecCCcchh
Confidence 32 458999999999988899999999999876 67888999996
No 121
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.05 E-value=1.4e-07 Score=100.58 Aligned_cols=312 Identities=11% Similarity=0.085 Sum_probs=149.7
Q ss_pred EeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccceee
Q 003878 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFF 214 (789)
Q Consensus 135 ~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 214 (789)
..-.|.+||++|+|..+..| ..+++++||+|+++++.+-.... . +.+.+..|+.+.++|.+.....
T Consensus 39 ~~~~ft~dG~kllF~s~~dg--~~nly~lDL~t~~i~QLTdg~g~----~--------~~g~~~s~~~~~~~Yv~~~~~l 104 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFDG--NRNLYLLDLATGEITQLTDGPGD----N--------TFGGFLSPDDRALYYVKNGRSL 104 (386)
T ss_dssp TS--B-TTS-EEEEEE-TTS--S-EEEEEETTT-EEEE---SS-B-------------TTT-EE-TTSSEEEEEETTTEE
T ss_pred cCCCcCCCCCEEEEEeccCC--CcceEEEEcccCEEEECccCCCC----C--------ccceEEecCCCeEEEEECCCeE
Confidence 35568999999999988776 57899999999988763311100 0 1135566777655555543222
Q ss_pred EEEeeeccccceeeeeeecccccceEEEEe--CCcEEEEEEccCCCCC--CCCC-CCccccCCcccEEEEEECCCCCCCc
Q 003878 215 FYLFSLVKSTIYSFWSVVSQFKFSSIAWTH--DSKGFFYSRYPAPKEG--KDMD-AGTETDSNLYHEFYYHFLGTKQSED 289 (789)
Q Consensus 215 ~~~~~s~~~g~~~l~~~~~~~~~~~~~wsp--Dg~~i~y~~~~~~~~~--~~~~-~~~~~~~~~~~~i~~~~lg~~~~~~ 289 (789)
.-+=+.. -+.-.||.++-.++ +...|+. |++.++..+....+.. .++. ....-...-..+|+..++.+++ .
T Consensus 105 ~~vdL~T-~e~~~vy~~p~~~~-g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~--~ 180 (386)
T PF14583_consen 105 RRVDLDT-LEERVVYEVPDDWK-GYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE--R 180 (386)
T ss_dssp EEEETTT---EEEEEE--TTEE-EEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----E
T ss_pred EEEECCc-CcEEEEEECCcccc-cccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc--e
Confidence 1111111 12235666655555 4567753 5777766654321100 0000 0000012345679999998764 4
Q ss_pred EEEEecCCCCeeEEEEEEecCCcEEEEEEEcC-CCC-ceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEe
Q 003878 290 ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEEN-CDP-VNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIA 367 (789)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~-~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s 367 (789)
..++++. .++.-+.+||..-.++..+.++ .+. ..+||+++.++.. ..++.+...+.......|+
T Consensus 181 ~~v~~~~---~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~-----------~~~v~~~~~~e~~gHEfw~ 246 (386)
T PF14583_consen 181 KVVFEDT---DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN-----------VKKVHRRMEGESVGHEFWV 246 (386)
T ss_dssp EEEEEES---S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS--------------EESS---TTEEEEEEEE-
T ss_pred eEEEecC---ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCc-----------ceeeecCCCCccccccccc
Confidence 5666653 3566788888555554444444 333 3589999987642 1112222233333567899
Q ss_pred cCCCEEEEEEC-CCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCC--------------eEEE
Q 003878 368 NDDTVFTFLTN-KDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDV--------------KYVL 432 (789)
Q Consensus 368 ~dG~~l~~~tn-~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g--------------~~~L 432 (789)
+||..|++..- .++..+-|+.+++++++ ...+.+.+. -..+..+.++.|++.--.+. .+-|
T Consensus 247 ~DG~~i~y~~~~~~~~~~~i~~~d~~t~~--~~~~~~~p~--~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i 322 (386)
T PF14583_consen 247 PDGSTIWYDSYTPGGQDFWIAGYDPDTGE--RRRLMEMPW--CSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWI 322 (386)
T ss_dssp TTSS-EEEEEEETTT--EEEEEE-TTT----EEEEEEE-S--EEEEEE-TTSSEEEEEE-------------------EE
T ss_pred CCCCEEEEEeecCCCCceEEEeeCCCCCC--ceEEEeCCc--eeeeEEcCCCCEEEecCCCCCccccccccceecCCcEE
Confidence 99999888654 44556789999999876 222222221 22344445455654432221 2367
Q ss_pred EEEECCCCceeeecccCC---------e--eEEEeecccCCcEEEEEEcCCCCCcEEEEEECC
Q 003878 433 QIRDLKNGSLLHQLPIEI---------G--SVNAISARREDSVVFISFTSFLIPGIVYQCNLK 484 (789)
Q Consensus 433 ~~~dl~tG~~~~~l~~~~---------~--~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~ 484 (789)
++++++.+.. ..|.... . .--.++++||++.|+|+ |++.-++.||..++.
T Consensus 323 ~~~~~~~~~~-~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~-Sd~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 323 YLFDVEAGRF-RKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFR-SDMEGPPAVYLVEIP 383 (386)
T ss_dssp EEEETTTTEE-EEEEE-------BTTBSSTT----EE-TTSSEEEEE-E-TTSS-EEEEEE--
T ss_pred EEeccccCce-eeeeeccCcceeecCCCccCCCCCccCCCCCEEEEE-CCCCCCccEEEEeCc
Confidence 8888876653 2222110 0 11246789999998876 566888999998764
No 122
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=99.05 E-value=5.6e-09 Score=110.67 Aligned_cols=196 Identities=16% Similarity=0.132 Sum_probs=124.6
Q ss_pred HHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHH-cCCCCCCcEEEEeeChHHHHHHHHHHh
Q 003878 560 RTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLIS-AGYTQSRKLCIEGGSNGGLLVGACINQ 638 (789)
Q Consensus 560 ~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~-~~~~d~~~i~i~G~S~GG~l~~~~~~~ 638 (789)
+..+|+ +||+|+++||-|-|. .|... .......-|.+.|++.+.. .|.....+++++|+|.||.-+++++..
T Consensus 19 l~~~L~-~GyaVv~pDY~Glg~---~y~~~---~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~l 91 (290)
T PF03583_consen 19 LAAWLA-RGYAVVAPDYEGLGT---PYLNG---RSEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAEL 91 (290)
T ss_pred HHHHHH-CCCEEEecCCCCCCC---cccCc---HhHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHHH
Confidence 466777 999999999988654 22111 1112334566666665554 354445799999999999999887754
Q ss_pred ----CCCc---eeEEEecCCcccccccccccCCccc---------------------hhhcCCCC---------------
Q 003878 639 ----RPDL---FGCALAHVGVMDMLRYHKFTIGHAW---------------------VSDFGCSE--------------- 675 (789)
Q Consensus 639 ----~pd~---f~a~v~~~p~~d~~~~~~~~~~~~~---------------------~~e~g~p~--------------- 675 (789)
.||+ +.++++..|..|+..+.....+..+ ..++.+|.
T Consensus 92 ~~~YApeL~~~l~Gaa~gg~~~dl~~~~~~~~~~~~~g~~~~~l~gl~~~yP~l~~~~~~~l~~~g~~~~~~~~~~c~~~ 171 (290)
T PF03583_consen 92 APSYAPELNRDLVGAAAGGPPADLAALLRALNGGPFAGLVPYALLGLAAAYPELDELLDSYLTPEGRALLDDARTRCLAD 171 (290)
T ss_pred hHHhCcccccceeEEeccCCccCHHHHHhccCCCccHhHHHHHHHHHHHhCccHHHHHHHHhhHHHHHHHHHHHhhhHHH
Confidence 3676 7899999898887654321111000 00000010
Q ss_pred --------------------------cHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHH
Q 003878 676 --------------------------EEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLL 729 (789)
Q Consensus 676 --------------------------~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~ 729 (789)
++...+.+...+. ... .......|++|.||.+|..||+....+++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l--~~~-------~~~~P~~Pv~i~~g~~D~vvP~~~~~~l~ 242 (290)
T PF03583_consen 172 IVAEYAFQDLFTGDTRYFKPGADLLADPAFRRALAENSL--GMG-------GDWTPTVPVLIYQGTADEVVPPADTDALV 242 (290)
T ss_pred HHHHhhhccccccchhccCChhhhhhhHHHHHHHHHhhc--ccc-------CCCCCCCCEEEEecCCCCCCChHHHHHHH
Confidence 0011111111111 000 11123579999999999999999999999
Q ss_pred HHHHHhhccCCCCCCCC-CcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCCC
Q 003878 730 ATMQYVLCTSLENSPQT-NPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGAS 786 (789)
Q Consensus 730 ~~L~~~~~~~~~~~~~~-~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 786 (789)
+++.+. | .+++++.++..+|.... .......++||...+...
T Consensus 243 ~~~c~~----------G~a~V~~~~~~~~~H~~~~-----~~~~~~a~~Wl~~rf~G~ 285 (290)
T PF03583_consen 243 AKWCAA----------GGADVEYVRYPGGGHLGAA-----FASAPDALAWLDDRFAGK 285 (290)
T ss_pred HHHHHc----------CCCCEEEEecCCCChhhhh-----hcCcHHHHHHHHHHHCCC
Confidence 999988 8 79999999999997542 223356789999888554
No 123
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.04 E-value=6.5e-09 Score=113.72 Aligned_cols=74 Identities=15% Similarity=0.033 Sum_probs=53.4
Q ss_pred CCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCc-EEEEeeChHHHHHHHHHHhCCCceeE
Q 003878 567 LGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRK-LCIEGGSNGGLLVGACINQRPDLFGC 645 (789)
Q Consensus 567 ~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~-i~i~G~S~GG~l~~~~~~~~pd~f~a 645 (789)
.+|.|+++|.||.|.... ....++|..+.+..+++.- +-++ +.++|+|+||++++.++.++|+++++
T Consensus 98 ~~~~Vi~~Dl~G~g~s~~----------~~~~~~~~a~dl~~ll~~l--~l~~~~~lvG~SmGG~vA~~~A~~~P~~V~~ 165 (343)
T PRK08775 98 ARFRLLAFDFIGADGSLD----------VPIDTADQADAIALLLDAL--GIARLHAFVGYSYGALVGLQFASRHPARVRT 165 (343)
T ss_pred cccEEEEEeCCCCCCCCC----------CCCCHHHHHHHHHHHHHHc--CCCcceEEEEECHHHHHHHHHHHHChHhhhe
Confidence 689999999998764210 1123455555555555431 2235 57999999999999999999999999
Q ss_pred EEecCCc
Q 003878 646 ALAHVGV 652 (789)
Q Consensus 646 ~v~~~p~ 652 (789)
+|+..+.
T Consensus 166 LvLi~s~ 172 (343)
T PRK08775 166 LVVVSGA 172 (343)
T ss_pred EEEECcc
Confidence 9988764
No 124
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=99.03 E-value=1.5e-08 Score=107.07 Aligned_cols=107 Identities=20% Similarity=0.181 Sum_probs=75.6
Q ss_pred CCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCC
Q 003878 535 DGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGY 614 (789)
Q Consensus 535 ~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~ 614 (789)
.+..|.||++||..+.. ..|.. ....|.++||.|+++|+||.|.... ......++++..+.+..++++-.
T Consensus 15 ~~~~p~vvliHG~~~~~--~~w~~-~~~~L~~~g~~vi~~dl~g~G~s~~-------~~~~~~~~~~~~~~l~~~i~~l~ 84 (273)
T PLN02211 15 NRQPPHFVLIHGISGGS--WCWYK-IRCLMENSGYKVTCIDLKSAGIDQS-------DADSVTTFDEYNKPLIDFLSSLP 84 (273)
T ss_pred cCCCCeEEEECCCCCCc--CcHHH-HHHHHHhCCCEEEEecccCCCCCCC-------CcccCCCHHHHHHHHHHHHHhcC
Confidence 45678999999976543 34443 3455655899999999999774210 01122566666665555554421
Q ss_pred CCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 615 TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 615 ~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
..+++.++|||+||+++..++.++|++++++|...+.
T Consensus 85 -~~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~ 121 (273)
T PLN02211 85 -ENEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAAT 121 (273)
T ss_pred -CCCCEEEEEECchHHHHHHHHHhChhheeEEEEeccc
Confidence 2368999999999999999999999999999987664
No 125
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=99.02 E-value=8.9e-10 Score=126.83 Aligned_cols=228 Identities=18% Similarity=0.130 Sum_probs=132.8
Q ss_pred cCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCC-eEEEEEeec-CCCCCChhHHhcccc
Q 003878 515 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLG-AVFCIANIR-GGGEYGEEWHKGGAL 592 (789)
Q Consensus 515 s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G-~~v~~~~~R-G~g~~g~~~~~~~~~ 592 (789)
+.|- +.+.++.|......++.|+||++|||.......... ....++.+.+ ++|+.+||| |..+|...-. ..
T Consensus 75 sEdc---l~l~i~~p~~~~~~~~~pv~v~ihGG~~~~g~~~~~-~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~---~~ 147 (493)
T cd00312 75 SEDC---LYLNVYTPKNTKPGNSLPVMVWIHGGGFMFGSGSLY-PGDGLAREGDNVIVVSINYRLGVLGFLSTGD---IE 147 (493)
T ss_pred CCcC---CeEEEEeCCCCCCCCCCCEEEEEcCCccccCCCCCC-ChHHHHhcCCCEEEEEecccccccccccCCC---CC
Confidence 4455 566777887644456789999999996544443332 1234454344 999999999 5545543211 12
Q ss_pred cCCcchHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHh--CCCceeEEEecCCcccccccccccC---C
Q 003878 593 AKKQNCFDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQ--RPDLFGCALAHVGVMDMLRYHKFTI---G 664 (789)
Q Consensus 593 ~~~~~~~~D~~~~~~~L~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~--~pd~f~a~v~~~p~~d~~~~~~~~~---~ 664 (789)
..+...+.|.++|++|+.++ --.||++|.|+|+|+||.++.+++.. .+.+|+++|+++|............ .
T Consensus 148 ~~~n~g~~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~~~~~~~~~~~~~~ 227 (493)
T cd00312 148 LPGNYGLKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSALSPWAIQENARGRA 227 (493)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCccCcccccccHHHHH
Confidence 23344578999999999876 23699999999999999999988876 2458999999988665322111110 0
Q ss_pred ccchhhcCCCC--cHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCC
Q 003878 665 HAWVSDFGCSE--EEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLEN 742 (789)
Q Consensus 665 ~~~~~e~g~p~--~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~ 742 (789)
.......|+.. ..+..+.|++.++...++.. ..... ......+...-.-|..+-+.++.++.+.=+
T Consensus 228 ~~~~~~lgc~~~~~~~~l~cLr~~~~~~l~~a~-~~~~~--~~~~~~~~f~PvvDg~~lp~~p~~~~~~g~--------- 295 (493)
T cd00312 228 KRLARLLGCNDTSSAELLDCLRSKSAEELLDAT-RKLLL--FSYSPFLPFGPVVDGDFIPDDPEELIKEGK--------- 295 (493)
T ss_pred HHHHHHcCCCCCCHHHHHHHHhcCCHHHHHHHH-Hhhcc--ccccCccceeeecCCCCCCcCHHHHHhcCC---------
Confidence 11223456652 23345667766543322211 00000 000011111222344455555555443222
Q ss_pred CCCCCcEEEEEeCCCCcCCC
Q 003878 743 SPQTNPIIGRIERKAGHGVG 762 (789)
Q Consensus 743 ~~~~~~~~l~~~~~~gH~~~ 762 (789)
..++|+.+-...++|..+.
T Consensus 296 -~~~vPvLiG~t~dEg~~f~ 314 (493)
T cd00312 296 -FAKVPLIIGVTKDEGGYFA 314 (493)
T ss_pred -CCCCCEEEEEeccchhhhH
Confidence 2278999988888887643
No 126
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.01 E-value=2.7e-08 Score=103.37 Aligned_cols=271 Identities=21% Similarity=0.204 Sum_probs=158.5
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccce
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIF 212 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 212 (789)
.+=.+++|++|||||-+... ...-||...-.+.-.+-.++.+ |+-+ ..--.|+||.
T Consensus 226 EVWfl~FS~nGkyLAsaSkD---~Taiiw~v~~d~~~kl~~tlvg------h~~~-----V~yi~wSPDd---------- 281 (519)
T KOG0293|consen 226 EVWFLQFSHNGKYLASASKD---STAIIWIVVYDVHFKLKKTLVG------HSQP-----VSYIMWSPDD---------- 281 (519)
T ss_pred cEEEEEEcCCCeeEeeccCC---ceEEEEEEecCcceeeeeeeec------ccCc-----eEEEEECCCC----------
Confidence 35567899999999944321 1223333333332111112211 1111 1112456777
Q ss_pred eeEEEeeeccccceeeeeeec-----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEE
Q 003878 213 FFFYLFSLVKSTIYSFWSVVS-----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHF 281 (789)
Q Consensus 213 ~~~~~~~s~~~g~~~l~~~~~-----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 281 (789)
++|-.+..+....+|.+.- .+...+-+|-|||.+++.... ...++.++
T Consensus 282 --ryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~-------------------dr~i~~wd 340 (519)
T KOG0293|consen 282 --RYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSP-------------------DRTIIMWD 340 (519)
T ss_pred --CeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCC-------------------CCcEEEec
Confidence 4666666677778887765 244578899999999774421 24577777
Q ss_pred CCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccc
Q 003878 282 LGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA 361 (789)
Q Consensus 282 lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~ 361 (789)
++... .-.|+....+ .+..++.|+||++++.... ..++.+++.++..+ + .+...-..
T Consensus 341 lDgn~---~~~W~gvr~~-~v~dlait~Dgk~vl~v~~-----d~~i~l~~~e~~~d-------------r-~lise~~~ 397 (519)
T KOG0293|consen 341 LDGNI---LGNWEGVRDP-KVHDLAITYDGKYVLLVTV-----DKKIRLYNREARVD-------------R-GLISEEQP 397 (519)
T ss_pred CCcch---hhcccccccc-eeEEEEEcCCCcEEEEEec-----ccceeeechhhhhh-------------h-ccccccCc
Confidence 76432 2234444333 3568899999999988763 35577888776310 1 11211111
Q ss_pred ee-EEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCc-eeeeEEEec--CCEEEEEEEeCCeEEEEEEEC
Q 003878 362 QY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERD-VLESATAVN--LNQMIVSYLSDVKYVLQIRDL 437 (789)
Q Consensus 362 ~~-~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~-~i~~v~~~~--~~~lv~~~~~~g~~~L~~~dl 437 (789)
.. -.+|.||+.+. .|.. ...+.++|++.....+....+.... .|.+ .++ ++.+++++++|+ +||+|+.
T Consensus 398 its~~iS~d~k~~L--vnL~--~qei~LWDl~e~~lv~kY~Ghkq~~fiIrS--CFgg~~~~fiaSGSED~--kvyIWhr 469 (519)
T KOG0293|consen 398 ITSFSISKDGKLAL--VNLQ--DQEIHLWDLEENKLVRKYFGHKQGHFIIRS--CFGGGNDKFIASGSEDS--KVYIWHR 469 (519)
T ss_pred eeEEEEcCCCcEEE--EEcc--cCeeEEeecchhhHHHHhhcccccceEEEe--ccCCCCcceEEecCCCc--eEEEEEc
Confidence 11 23678887544 4432 3578899998543112222222212 2222 233 357999999986 8999999
Q ss_pred CCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEE
Q 003878 438 KNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCN 482 (789)
Q Consensus 438 ~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~d 482 (789)
.+|+.+..|+.+...+..++++|....++.+. ..-+++..|-
T Consensus 470 ~sgkll~~LsGHs~~vNcVswNP~~p~m~ASa---sDDgtIRIWg 511 (519)
T KOG0293|consen 470 ISGKLLAVLSGHSKTVNCVSWNPADPEMFASA---SDDGTIRIWG 511 (519)
T ss_pred cCCceeEeecCCcceeeEEecCCCCHHHhhcc---CCCCeEEEec
Confidence 99998888887788888899998887766543 3334444443
No 127
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=99.01 E-value=1.1e-09 Score=118.82 Aligned_cols=220 Identities=19% Similarity=0.172 Sum_probs=135.9
Q ss_pred ecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCC---CccCCCCCCHHHHHHHHcCC-eEEEEEeecCCCCCCh-hHHh
Q 003878 514 PSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGF---NISVTPSFSVSRTILMRHLG-AVFCIANIRGGGEYGE-EWHK 588 (789)
Q Consensus 514 ~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~---~~~~~~~~~~~~~~~l~~~G-~~v~~~~~RG~g~~g~-~~~~ 588 (789)
-|.|. +.+-|+.|. .+..+.|+|||+|||. |+...+.|.+. .|+++| ++|+.+|||-|- +|- ++..
T Consensus 75 ~sEDC---L~LNIwaP~--~~a~~~PVmV~IHGG~y~~Gs~s~~~ydgs---~La~~g~vVvVSvNYRLG~-lGfL~~~~ 145 (491)
T COG2272 75 GSEDC---LYLNIWAPE--VPAEKLPVMVYIHGGGYIMGSGSEPLYDGS---ALAARGDVVVVSVNYRLGA-LGFLDLSS 145 (491)
T ss_pred ccccc---eeEEeeccC--CCCCCCcEEEEEeccccccCCCcccccChH---HHHhcCCEEEEEeCccccc-ceeeehhh
Confidence 35676 445566777 3456789999999993 55556667753 344477 999999999653 221 1111
Q ss_pred cc--cccCCcchHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHhCCC---ceeEEEecCCccccccccc
Q 003878 589 GG--ALAKKQNCFDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQRPD---LFGCALAHVGVMDMLRYHK 660 (789)
Q Consensus 589 ~~--~~~~~~~~~~D~~~~~~~L~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~pd---~f~a~v~~~p~~d~~~~~~ 660 (789)
-. ........+.|.+.+++|+.++ ---||++|.|+|.|+|++.++.++.. |. +|+-+|+.+|-.-......
T Consensus 146 ~~~~~~~~~n~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~-P~AkGLF~rAi~~Sg~~~~~~s~~ 224 (491)
T COG2272 146 LDTEDAFASNLGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAV-PSAKGLFHRAIALSGAASRVTSRE 224 (491)
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcC-ccchHHHHHHHHhCCCCCccCcHH
Confidence 11 1111125689999999999765 33599999999999999999998886 76 8888888888665222111
Q ss_pred --ccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCC--CCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhh
Q 003878 661 --FTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRP--WEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVL 736 (789)
Q Consensus 661 --~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~--~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~ 736 (789)
......+....|.+ .+..+.|++.++-..++.. .+....-...++|++ |+.+-+.++..+.+.-+..
T Consensus 225 ~A~~~a~~f~~~lG~~--~~~~~~L~~~~~~~L~~~~~~~~~~~~~~~~~~p~~------~d~~lp~~P~e~~~~g~~~- 295 (491)
T COG2272 225 EAREKAAAFARALGIP--EATLDKLRALSAEDLVKARLPLIGRTFGAVPYGPVL------GDSLLPRDPLEAIAQGRSH- 295 (491)
T ss_pred HHHHHHHHHHHHhCCC--HHHHHHHhcCCHHHHHhhhhhhccccCCCcCCCCcc------CcccccCChhhhhhccccc-
Confidence 01112234456777 3445556666654433321 000000001234443 4445566777777776655
Q ss_pred ccCCCCCCCCCcEEEEEeCCCCcCC
Q 003878 737 CTSLENSPQTNPIIGRIERKAGHGV 761 (789)
Q Consensus 737 ~~~~~~~~~~~~~~l~~~~~~gH~~ 761 (789)
++|+.+-+.-++|-.+
T Consensus 296 ---------~vpl~iGtn~dEg~~f 311 (491)
T COG2272 296 ---------GVPLMIGTNHDEGSLF 311 (491)
T ss_pred ---------CCcEEeeccCCcceEE
Confidence 8888887777777654
No 128
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=99.01 E-value=2.1e-08 Score=101.98 Aligned_cols=116 Identities=16% Similarity=0.158 Sum_probs=87.0
Q ss_pred EEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHH
Q 003878 522 IPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDD 601 (789)
Q Consensus 522 i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D 601 (789)
.|..+++|+. .+.+|++|+.||-. ....+.......+++.||+|+.++...-. ........++
T Consensus 4 ~~l~v~~P~~---~g~yPVv~f~~G~~---~~~s~Ys~ll~hvAShGyIVV~~d~~~~~-----------~~~~~~~~~~ 66 (259)
T PF12740_consen 4 KPLLVYYPSS---AGTYPVVLFLHGFL---LINSWYSQLLEHVASHGYIVVAPDLYSIG-----------GPDDTDEVAS 66 (259)
T ss_pred CCeEEEecCC---CCCcCEEEEeCCcC---CCHHHHHHHHHHHHhCceEEEEecccccC-----------CCCcchhHHH
Confidence 4678899987 48899999999954 23333444567777799999999954311 1222345677
Q ss_pred HHHHHHHHHHc---C-----CCCCCcEEEEeeChHHHHHHHHHHhC-----CCceeEEEecCCccc
Q 003878 602 FISASEYLISA---G-----YTQSRKLCIEGGSNGGLLVGACINQR-----PDLFGCALAHVGVMD 654 (789)
Q Consensus 602 ~~~~~~~L~~~---~-----~~d~~~i~i~G~S~GG~l~~~~~~~~-----pd~f~a~v~~~p~~d 654 (789)
+.+.++||.+. . -.|-+||+|+|||.||-++..++.++ +.+|+|+|+..|+--
T Consensus 67 ~~~vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVdG 132 (259)
T PF12740_consen 67 AAEVIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVDG 132 (259)
T ss_pred HHHHHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEeccccc
Confidence 88889998762 1 14778999999999999999988887 558999999999763
No 129
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=98.97 E-value=1.4e-08 Score=105.06 Aligned_cols=99 Identities=13% Similarity=0.035 Sum_probs=69.6
Q ss_pred ccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCC
Q 003878 538 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 617 (789)
Q Consensus 538 ~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~ 617 (789)
.|.||++||..+... .|... ...+ ++|.|+++|.||.|..... ....+++..+-+..+++.- ..
T Consensus 2 ~p~vvllHG~~~~~~--~w~~~-~~~l--~~~~vi~~D~~G~G~S~~~---------~~~~~~~~~~~l~~~l~~~--~~ 65 (242)
T PRK11126 2 LPWLVFLHGLLGSGQ--DWQPV-GEAL--PDYPRLYIDLPGHGGSAAI---------SVDGFADVSRLLSQTLQSY--NI 65 (242)
T ss_pred CCEEEEECCCCCChH--HHHHH-HHHc--CCCCEEEecCCCCCCCCCc---------cccCHHHHHHHHHHHHHHc--CC
Confidence 378999999876543 44433 3445 3799999999998764321 1125666555555555542 34
Q ss_pred CcEEEEeeChHHHHHHHHHHhCCC-ceeEEEecCCc
Q 003878 618 RKLCIEGGSNGGLLVGACINQRPD-LFGCALAHVGV 652 (789)
Q Consensus 618 ~~i~i~G~S~GG~l~~~~~~~~pd-~f~a~v~~~p~ 652 (789)
+++.++|||+||.+++.++.++|+ +++++++..+.
T Consensus 66 ~~~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~ 101 (242)
T PRK11126 66 LPYWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGN 101 (242)
T ss_pred CCeEEEEECHHHHHHHHHHHhCCcccccEEEEeCCC
Confidence 699999999999999999999865 48888876544
No 130
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.97 E-value=5.5e-07 Score=93.59 Aligned_cols=259 Identities=17% Similarity=0.126 Sum_probs=155.9
Q ss_pred cEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccc
Q 003878 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRG 210 (789)
Q Consensus 131 ~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 210 (789)
...+..+.++|||++|+.+.. ...|++||+.+++.... +... . + -.....+.|++
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~-----~g~i~i~~~~~~~~~~~-~~~~------~-~----~i~~~~~~~~~-------- 63 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSG-----DGTIKVWDLETGELLRT-LKGH------T-G----PVRDVAASADG-------- 63 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeec-----CcEEEEEEeeCCCcEEE-EecC------C-c----ceeEEEECCCC--------
Confidence 345788999999999986543 45899999988753221 1110 0 0 00122223333
Q ss_pred ceeeEEEeeeccccceeeeeeec----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEE
Q 003878 211 IFFFFYLFSLVKSTIYSFWSVVS----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYH 280 (789)
Q Consensus 211 ~~~~~~~~~s~~~g~~~l~~~~~----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 280 (789)
..++.+..+|...+|.+.. ......+.|+|+++.++... ....+.++
T Consensus 64 ----~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-------------------~~~~i~~~ 120 (289)
T cd00200 64 ----TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSS-------------------RDKTIKVW 120 (289)
T ss_pred ----CEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEec-------------------CCCeEEEE
Confidence 3566667788888888764 11245688998866555332 12358888
Q ss_pred ECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc-
Q 003878 281 FLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF- 359 (789)
Q Consensus 281 ~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~- 359 (789)
++.+.. ....+. .+...+..+.++|++++++.... ...++++|+.++. .........
T Consensus 121 ~~~~~~--~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-----~~~i~i~d~~~~~-------------~~~~~~~~~~ 178 (289)
T cd00200 121 DVETGK--CLTTLR--GHTDWVNSVAFSPDGTFVASSSQ-----DGTIKLWDLRTGK-------------CVATLTGHTG 178 (289)
T ss_pred ECCCcE--EEEEec--cCCCcEEEEEEcCcCCEEEEEcC-----CCcEEEEEccccc-------------cceeEecCcc
Confidence 886432 122222 22334567899999888776542 2458888987532 111111111
Q ss_pred cceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCC
Q 003878 360 DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKN 439 (789)
Q Consensus 360 ~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~t 439 (789)
......|+++++.+++.+. +..|..+|+..++....+..+. ..+..+.+.+++.+++....++ .|++|++.+
T Consensus 179 ~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~--~i~i~~~~~ 250 (289)
T cd00200 179 EVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKCLGTLRGHE--NGVNSVAFSPDGYLLASGSEDG--TIRVWDLRT 250 (289)
T ss_pred ccceEEECCCcCEEEEecC----CCcEEEEECCCCceecchhhcC--CceEEEEEcCCCcEEEEEcCCC--cEEEEEcCC
Confidence 1122348888888877554 4678889987655222221232 3577888888666776666455 788999987
Q ss_pred CceeeecccCCeeEEEeecccCCcEEEE
Q 003878 440 GSLLHQLPIEIGSVNAISARREDSVVFI 467 (789)
Q Consensus 440 G~~~~~l~~~~~~v~~~s~s~d~~~l~~ 467 (789)
++....+......+..+.++++++.++.
T Consensus 251 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 278 (289)
T cd00200 251 GECVQTLSGHTNSVTSLAWSPDGKRLAS 278 (289)
T ss_pred ceeEEEccccCCcEEEEEECCCCCEEEE
Confidence 7765666544556777888888775553
No 131
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.97 E-value=1e-07 Score=108.18 Aligned_cols=233 Identities=18% Similarity=0.138 Sum_probs=147.4
Q ss_pred CCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCC-ceecccccccccccccCccceeeeeeccccccccccccc
Q 003878 129 DGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQ-IVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLY 207 (789)
Q Consensus 129 ~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 207 (789)
++...+..+.|||||++|+ .|++..+|+|||++.+ ..+ ..+.+. . .
T Consensus 201 ~h~~~v~~~~fs~d~~~l~-----s~s~D~tiriwd~~~~~~~~-~~l~gH------~-~-------------------- 247 (456)
T KOG0266|consen 201 GHTRGVSDVAFSPDGSYLL-----SGSDDKTLRIWDLKDDGRNL-KTLKGH------S-T-------------------- 247 (456)
T ss_pred ccccceeeeEECCCCcEEE-----EecCCceEEEeeccCCCeEE-EEecCC------C-C--------------------
Confidence 4567789999999999887 5677889999999444 333 233332 0 0
Q ss_pred cccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCC
Q 003878 208 LRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQS 287 (789)
Q Consensus 208 ~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~ 287 (789)
...+++|+|+|+.|+-...+ ..+++|++.++..
T Consensus 248 ----------------------------~v~~~~f~p~g~~i~Sgs~D-------------------~tvriWd~~~~~~ 280 (456)
T KOG0266|consen 248 ----------------------------YVTSVAFSPDGNLLVSGSDD-------------------GTVRIWDVRTGEC 280 (456)
T ss_pred ----------------------------ceEEEEecCCCCEEEEecCC-------------------CcEEEEeccCCeE
Confidence 24789999999555544332 3589999987432
Q ss_pred CcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccc---eeE
Q 003878 288 EDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA---QYE 364 (789)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~---~~~ 364 (789)
...+.. +...+..+++++||++|+..+. ...|.++|+.++.. .....+...... ...
T Consensus 281 --~~~l~~--hs~~is~~~f~~d~~~l~s~s~-----d~~i~vwd~~~~~~-----------~~~~~~~~~~~~~~~~~~ 340 (456)
T KOG0266|consen 281 --VRKLKG--HSDGISGLAFSPDGNLLVSASY-----DGTIRVWDLETGSK-----------LCLKLLSGAENSAPVTSV 340 (456)
T ss_pred --EEeeec--cCCceEEEEECCCCCEEEEcCC-----CccEEEEECCCCce-----------eeeecccCCCCCCceeEE
Confidence 223333 3344668899999999987643 35588999988520 001111111111 234
Q ss_pred EEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCC-ceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCcee
Q 003878 365 VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAER-DVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLL 443 (789)
Q Consensus 365 ~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~-~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~ 443 (789)
.++|+|++++..+ .+..|..+++..+........+... .-+..+..+.++.++++...++ .|++|++.++..+
T Consensus 341 ~fsp~~~~ll~~~----~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~--~v~~~~~~s~~~~ 414 (456)
T KOG0266|consen 341 QFSPNGKYLLSAS----LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDG--SVYVWDSSSGGIL 414 (456)
T ss_pred EECCCCcEEEEec----CCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCc--eEEEEeCCccchh
Confidence 4889999887643 3457888888876534445555432 1233333344467777788776 7999999887766
Q ss_pred eecccC-CeeEEEeecccCCcEEEE
Q 003878 444 HQLPIE-IGSVNAISARREDSVVFI 467 (789)
Q Consensus 444 ~~l~~~-~~~v~~~s~s~d~~~l~~ 467 (789)
..+... ...+..+++.+..+.+..
T Consensus 415 ~~l~~h~~~~~~~~~~~~~~~~~~s 439 (456)
T KOG0266|consen 415 QRLEGHSKAAVSDLSSHPTENLIAS 439 (456)
T ss_pred hhhcCCCCCceeccccCCCcCeeee
Confidence 666655 555556667776665443
No 132
>COG0627 Predicted esterase [General function prediction only]
Probab=98.96 E-value=6.9e-09 Score=109.84 Aligned_cols=232 Identities=17% Similarity=0.137 Sum_probs=146.6
Q ss_pred CCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeec--------------CCC-CCChhHHhcccccCCcchH
Q 003878 535 DGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIR--------------GGG-EYGEEWHKGGALAKKQNCF 599 (789)
Q Consensus 535 ~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~R--------------G~g-~~g~~~~~~~~~~~~~~~~ 599 (789)
+.+.|++++.||--+......-........++.|.+++.+|.. |++ +|=.+|.+...... ...+
T Consensus 51 ~~~ipV~~~l~G~t~~~~~~~~~~g~~~~a~~~g~~~~~p~t~~~~~~~~~~vv~p~G~~~sfY~d~~~~~~~~~-~~q~ 129 (316)
T COG0627 51 GRDIPVLYLLSGLTCNEPNVYLLDGLRRQADESGWAVVTPDTSPRGAGVNISVVMPLGGGASFYSDWTQPPWASG-PYQW 129 (316)
T ss_pred CCCCCEEEEeCCCCCCCCceEeccchhhhhhhcCeEEecCCCCcccCCCCccccccCCCccceecccccCccccC-ccch
Confidence 4678888888886544311111112345566688888887432 322 22223433321111 2445
Q ss_pred HHHHHH-HHHHH-HcCCCCC--CcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccccc-------CCccch
Q 003878 600 DDFISA-SEYLI-SAGYTQS--RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFT-------IGHAWV 668 (789)
Q Consensus 600 ~D~~~~-~~~L~-~~~~~d~--~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~-------~~~~~~ 668 (789)
++++.. +-.++ +..-++. ++.+|.|+||||+-++.+|+.+||+|+.+.+.+|+++.......+ -+..+.
T Consensus 130 ~tfl~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~~~~~~~~~~~~~g~~~~~ 209 (316)
T COG0627 130 ETFLTQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSSPWGPTLAMGDPWGGKAFN 209 (316)
T ss_pred hHHHHhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceeccccccccccccccccccccccccCccHH
Confidence 666543 22223 3333454 389999999999999999999999999999999999987443222 111223
Q ss_pred hhcCCCCcHHHHHHHHhcCcccCCCCCCCC--C---CCCCCCCCeEEEEecCCCCCCC--cHHHHHHHHHHHHhhccCCC
Q 003878 669 SDFGCSEEEEEFYWLIKYSPLHNVRRPWEQ--N---PDKPFQYPSTLLLTADHDDRVV--PLHSLKLLATMQYVLCTSLE 741 (789)
Q Consensus 669 ~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~--~---~~~~~~~pp~Li~~g~~D~~V~--~~~~~~~~~~L~~~~~~~~~ 741 (789)
.-||...++. .+.++|..++++...+ . -... ..+++++-+|..|.... ...+.++.+++++.
T Consensus 210 ~~~G~~~~~~----w~~~D~~~~~~~l~~~~~~~~~~~~~-~~~~~~~d~g~ad~~~~~~~~~~~~~~~a~~~~------ 278 (316)
T COG0627 210 AMLGPDSDPA----WQENDPLSLIEKLVANANTRIWVYGG-SPPELLIDNGPADFFLAANNLSTRAFAEALRAA------ 278 (316)
T ss_pred HhcCCCcccc----ccccCchhHHHHhhhcccccceeccc-CCCccccccccchhhhhhcccCHHHHHHHHHhc------
Confidence 3466654432 3567777776641000 0 0000 25788999999998764 23478899999988
Q ss_pred CCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCCC
Q 003878 742 NSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGAS 786 (789)
Q Consensus 742 ~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 786 (789)
|.+..++..+++.|.... ....++..+.|+...|+..
T Consensus 279 ----g~~~~~~~~~~G~Hsw~~----w~~~l~~~~~~~a~~l~~~ 315 (316)
T COG0627 279 ----GIPNGVRDQPGGDHSWYF----WASQLADHLPWLAGALGLA 315 (316)
T ss_pred ----CCCceeeeCCCCCcCHHH----HHHHHHHHHHHHHHHhccC
Confidence 999999988899997632 3567788999999988764
No 133
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=98.93 E-value=3e-08 Score=97.37 Aligned_cols=182 Identities=15% Similarity=0.062 Sum_probs=106.5
Q ss_pred EEEEEcCCCCccCCCCCCHHHHHHHHcCCe--EEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCC
Q 003878 540 CLLYGYGGFNISVTPSFSVSRTILMRHLGA--VFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 617 (789)
Q Consensus 540 ~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~--~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~ 617 (789)
.|||+||- .++..-.-.....+++++.|. .+..++.. ....+.++.++.++++. .+
T Consensus 1 ~ilYlHGF-~Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~-------------------~~p~~a~~~l~~~i~~~--~~ 58 (187)
T PF05728_consen 1 MILYLHGF-NSSPQSFKAQALKQYFAEHGPDIQYPCPDLP-------------------PFPEEAIAQLEQLIEEL--KP 58 (187)
T ss_pred CeEEecCC-CCCCCCHHHHHHHHHHHHhCCCceEECCCCC-------------------cCHHHHHHHHHHHHHhC--CC
Confidence 37999994 332221111223455655553 34444432 22356677777777763 34
Q ss_pred CcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCC--CcHHHHHHHHhcCcccCCCCC
Q 003878 618 RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCS--EEEEEFYWLIKYSPLHNVRRP 695 (789)
Q Consensus 618 ~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p--~~~~~~~~l~~~sP~~~v~~~ 695 (789)
+.++++|.|+||+.+.+++.+++ .++ |+.+|.+.+...+...+|..-...++.. -++.....++++.... +.
T Consensus 59 ~~~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~p~~~l~~~iG~~~~~~~~e~~~~~~~~~~~l~~l~~~~-~~-- 132 (187)
T PF05728_consen 59 ENVVLIGSSLGGFYATYLAERYG--LPA-VLINPAVRPYELLQDYIGEQTNPYTGESYELTEEHIEELKALEVPY-PT-- 132 (187)
T ss_pred CCeEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCCHHHHHHHhhCccccCCCCccceechHhhhhcceEeccc-cC--
Confidence 45999999999999999988864 445 7778888876555433332111111211 1222233333322111 11
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHH
Q 003878 696 WEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADR 775 (789)
Q Consensus 696 ~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~ 775 (789)
..-+++++++..|..+++.++.+.++ .. ...+.+|++|.+.. ..+....+
T Consensus 133 ---------~~~~~lvll~~~DEvLd~~~a~~~~~---~~--------------~~~i~~ggdH~f~~----f~~~l~~i 182 (187)
T PF05728_consen 133 ---------NPERYLVLLQTGDEVLDYREAVAKYR---GC--------------AQIIEEGGDHSFQD----FEEYLPQI 182 (187)
T ss_pred ---------CCccEEEEEecCCcccCHHHHHHHhc---Cc--------------eEEEEeCCCCCCcc----HHHHHHHH
Confidence 23489999999999999976655442 21 23456899999975 23566778
Q ss_pred HHHH
Q 003878 776 YGFM 779 (789)
Q Consensus 776 ~~fl 779 (789)
.+|+
T Consensus 183 ~~f~ 186 (187)
T PF05728_consen 183 IAFL 186 (187)
T ss_pred HHhh
Confidence 8886
No 134
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=98.93 E-value=3.4e-08 Score=108.65 Aligned_cols=107 Identities=15% Similarity=0.006 Sum_probs=76.0
Q ss_pred CccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCC
Q 003878 537 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQ 616 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d 616 (789)
..|.||++||...... .|.. ....|. .+|.|+++|.||.|.....-. ......+++++...+..++++- .
T Consensus 126 ~~~~ivllHG~~~~~~--~w~~-~~~~L~-~~~~Via~DlpG~G~S~~p~~----~~~~~ys~~~~a~~l~~~i~~l--~ 195 (383)
T PLN03084 126 NNPPVLLIHGFPSQAY--SYRK-VLPVLS-KNYHAIAFDWLGFGFSDKPQP----GYGFNYTLDEYVSSLESLIDEL--K 195 (383)
T ss_pred CCCeEEEECCCCCCHH--HHHH-HHHHHh-cCCEEEEECCCCCCCCCCCcc----cccccCCHHHHHHHHHHHHHHh--C
Confidence 3588999999765432 3443 345666 689999999999875322100 0011345667766666666552 3
Q ss_pred CCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcc
Q 003878 617 SRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 653 (789)
Q Consensus 617 ~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~ 653 (789)
.+++.++|+|+||.++..++.++|++++++|+..|..
T Consensus 196 ~~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~ 232 (383)
T PLN03084 196 SDKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPL 232 (383)
T ss_pred CCCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCC
Confidence 3589999999999999999999999999999988764
No 135
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=98.93 E-value=7.6e-09 Score=100.41 Aligned_cols=188 Identities=13% Similarity=0.135 Sum_probs=127.2
Q ss_pred cEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCC--ChhHHhc---ccccCCcchHHHHHHHHHHHHHcC
Q 003878 539 PCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEY--GEEWHKG---GALAKKQNCFDDFISASEYLISAG 613 (789)
Q Consensus 539 P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~--g~~~~~~---~~~~~~~~~~~D~~~~~~~L~~~~ 613 (789)
-+||.+---||...... ...+.-++..||.|++||+=.|.-+ +.+|... .++...+..+.|+.+.++||..+|
T Consensus 40 ~~li~i~DvfG~~~~n~--r~~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~~~~~i~~v~k~lk~~g 117 (242)
T KOG3043|consen 40 KVLIVIQDVFGFQFPNT--REGADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPKIWKDITAVVKWLKNHG 117 (242)
T ss_pred eEEEEEEeeeccccHHH--HHHHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCcccchhHHHHHHHHHHHcC
Confidence 46666655455433211 1123445558999999997554211 1111111 123555677899999999999776
Q ss_pred CCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCC
Q 003878 614 YTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVR 693 (789)
Q Consensus 614 ~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~ 693 (789)
++.+|+++|+.+||-.+..+....| +|.|+++..|.. .+.+. +.
T Consensus 118 --~~kkIGv~GfCwGak~vv~~~~~~~-~f~a~v~~hps~---------------------~d~~D------------~~ 161 (242)
T KOG3043|consen 118 --DSKKIGVVGFCWGAKVVVTLSAKDP-EFDAGVSFHPSF---------------------VDSAD------------IA 161 (242)
T ss_pred --CcceeeEEEEeecceEEEEeeccch-hheeeeEecCCc---------------------CChhH------------Hh
Confidence 4679999999999999888888866 788888766621 11111 11
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCC-------chh
Q 003878 694 RPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGL-------PTQ 766 (789)
Q Consensus 694 ~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~-------~~~ 766 (789)
. ...|+|++.|+.|..+|+..-..+-++|+... ..-..+.+|++.+||+.. ++.
T Consensus 162 ~----------vk~Pilfl~ae~D~~~p~~~v~~~ee~lk~~~---------~~~~~v~~f~g~~HGf~~~r~~~~~Ped 222 (242)
T KOG3043|consen 162 N----------VKAPILFLFAELDEDVPPKDVKAWEEKLKENP---------AVGSQVKTFSGVGHGFVARRANISSPED 222 (242)
T ss_pred c----------CCCCEEEEeecccccCCHHHHHHHHHHHhcCc---------ccceeEEEcCCccchhhhhccCCCChhH
Confidence 1 25799999999999999999888888888751 112579999999999863 111
Q ss_pred --hHHHHHHHHHHHHHHHh
Q 003878 767 --KMIDEAADRYGFMAKML 783 (789)
Q Consensus 767 --~~~~~~~~~~~fl~~~l 783 (789)
...+.++++..||.+++
T Consensus 223 ~~~~eea~~~~~~Wf~~y~ 241 (242)
T KOG3043|consen 223 KKAAEEAYQRFISWFKHYL 241 (242)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 22345677899998876
No 136
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.90 E-value=3.4e-07 Score=89.65 Aligned_cols=242 Identities=12% Similarity=0.085 Sum_probs=146.4
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecc-cccccccccccCccceeeeeeccccccccccccccccc
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEAD-ALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
++..++++||++.||-+ | +..|+++|+.++..-|. +++....+ ..+..+-.+|
T Consensus 42 qVNrLeiTpdk~~LAaa----~--~qhvRlyD~~S~np~Pv~t~e~h~kN-----------VtaVgF~~dg--------- 95 (311)
T KOG0315|consen 42 QVNRLEITPDKKDLAAA----G--NQHVRLYDLNSNNPNPVATFEGHTKN-----------VTAVGFQCDG--------- 95 (311)
T ss_pred ceeeEEEcCCcchhhhc----c--CCeeEEEEccCCCCCceeEEeccCCc-----------eEEEEEeecC---------
Confidence 57788999999999943 3 57899999999965331 11111000 0011111333
Q ss_pred eeeEEEeeeccccceeeeeeec-----cc----ccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEEC
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVS-----QF----KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFL 282 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~-----~~----~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l 282 (789)
+..|.+.++|+-.||.+.. .+ .+..+...|.-..|+.. .....|++|++
T Consensus 96 ---rWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~-------------------dqsg~irvWDl 153 (311)
T KOG0315|consen 96 ---RWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISG-------------------DQSGNIRVWDL 153 (311)
T ss_pred ---eEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEee-------------------cCCCcEEEEEc
Confidence 5789999999999999865 11 23456666665555533 12335999999
Q ss_pred CCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec---cc
Q 003878 283 GTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID---GF 359 (789)
Q Consensus 283 g~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~---~~ 359 (789)
+...-...++- +....+.+++.-|||++|+...+. ...|++++-+.. . ..++.++.+ ..
T Consensus 154 ~~~~c~~~liP---e~~~~i~sl~v~~dgsml~a~nnk-----G~cyvW~l~~~~-~---------~s~l~P~~k~~ah~ 215 (311)
T KOG0315|consen 154 GENSCTHELIP---EDDTSIQSLTVMPDGSMLAAANNK-----GNCYVWRLLNHQ-T---------ASELEPVHKFQAHN 215 (311)
T ss_pred cCCccccccCC---CCCcceeeEEEcCCCcEEEEecCC-----ccEEEEEccCCC-c---------cccceEhhheeccc
Confidence 98765544542 233556789999999999865543 347888876632 1 112222221 11
Q ss_pred c-ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECC
Q 003878 360 D-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLK 438 (789)
Q Consensus 360 ~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~ 438 (789)
. .--..+|||+++|+-.+. +-.++.++.++.-..+..+... ...+-+.+++.++..++....+. ..++|++.
T Consensus 216 ~~il~C~lSPd~k~lat~ss----dktv~iwn~~~~~kle~~l~gh-~rWvWdc~FS~dg~YlvTassd~--~~rlW~~~ 288 (311)
T KOG0315|consen 216 GHILRCLLSPDVKYLATCSS----DKTVKIWNTDDFFKLELVLTGH-QRWVWDCAFSADGEYLVTASSDH--TARLWDLS 288 (311)
T ss_pred ceEEEEEECCCCcEEEeecC----CceEEEEecCCceeeEEEeecC-CceEEeeeeccCccEEEecCCCC--ceeecccc
Confidence 1 112458999998874432 3456666666541123333322 24566777777677777777775 56778888
Q ss_pred CCceeeecc
Q 003878 439 NGSLLHQLP 447 (789)
Q Consensus 439 tG~~~~~l~ 447 (789)
.|+.+++-.
T Consensus 289 ~~k~v~qy~ 297 (311)
T KOG0315|consen 289 AGKEVRQYQ 297 (311)
T ss_pred cCceeeecC
Confidence 887655443
No 137
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.90 E-value=6.8e-06 Score=88.40 Aligned_cols=150 Identities=9% Similarity=0.091 Sum_probs=89.6
Q ss_pred EEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCC
Q 003878 304 SGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPK 383 (789)
Q Consensus 304 ~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~ 383 (789)
+++.++||..+++... .+|-++.-.++ .....-++...-..++|+++.+++ ++.+
T Consensus 410 ~lav~~d~~~avv~~~------~~iv~l~~~~~---------------~~~~~~~y~~s~vAv~~~~~~vaV----GG~D 464 (603)
T KOG0318|consen 410 GLAVLSDGGTAVVACI------SDIVLLQDQTK---------------VSSIPIGYESSAVAVSPDGSEVAV----GGQD 464 (603)
T ss_pred eEEEcCCCCEEEEEec------CcEEEEecCCc---------------ceeeccccccceEEEcCCCCEEEE----eccc
Confidence 5667778777766553 33545442221 111112333334458899998876 3344
Q ss_pred ceEEEEECCCCC--CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCce-eeecccCCeeEEEeeccc
Q 003878 384 YKIIRVDLKEPN--DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSL-LHQLPIEIGSVNAISARR 460 (789)
Q Consensus 384 ~~L~~~dl~~~~--~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~-~~~l~~~~~~v~~~s~s~ 460 (789)
++|..+.+.+.+ .-..++++. ..+..++.+++...++.....+ .+.+||.++.+. ...-.++...|..++|+|
T Consensus 465 gkvhvysl~g~~l~ee~~~~~h~--a~iT~vaySpd~~yla~~Da~r--kvv~yd~~s~~~~~~~w~FHtakI~~~aWsP 540 (603)
T KOG0318|consen 465 GKVHVYSLSGDELKEEAKLLEHR--AAITDVAYSPDGAYLAAGDASR--KVVLYDVASREVKTNRWAFHTAKINCVAWSP 540 (603)
T ss_pred ceEEEEEecCCcccceeeeeccc--CCceEEEECCCCcEEEEeccCC--cEEEEEcccCceecceeeeeeeeEEEEEeCC
Confidence 566666666643 112333443 5688899999766666665554 788899986654 123344566778899999
Q ss_pred CCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 461 EDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 461 d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
++..+ ...|..+ .++.|+++.-
T Consensus 541 ~n~~v--ATGSlDt--~Viiysv~kP 562 (603)
T KOG0318|consen 541 NNKLV--ATGSLDT--NVIIYSVKKP 562 (603)
T ss_pred CceEE--Eeccccc--eEEEEEccCh
Confidence 88744 3445544 6777777654
No 138
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.87 E-value=2.5e-08 Score=107.25 Aligned_cols=212 Identities=15% Similarity=0.093 Sum_probs=125.6
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCC
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 615 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~ 615 (789)
...|.||++|| |+. ....|......+....|+.|.++|.-|.|-.+ +.. ....-...+....++.+...-..
T Consensus 56 ~~~~pvlllHG-F~~-~~~~w~~~~~~L~~~~~~~v~aiDl~G~g~~s--~~~----~~~~y~~~~~v~~i~~~~~~~~~ 127 (326)
T KOG1454|consen 56 KDKPPVLLLHG-FGA-SSFSWRRVVPLLSKAKGLRVLAIDLPGHGYSS--PLP----RGPLYTLRELVELIRRFVKEVFV 127 (326)
T ss_pred CCCCcEEEecc-ccC-CcccHhhhccccccccceEEEEEecCCCCcCC--CCC----CCCceehhHHHHHHHHHHHhhcC
Confidence 46788999999 444 34455543333444347999999999855311 111 11123445666666655554333
Q ss_pred CCCcEEEEeeChHHHHHHHHHHhCCCceeEEE---ecCCcccccccc-------------------c--ccCC-ccchhh
Q 003878 616 QSRKLCIEGGSNGGLLVGACINQRPDLFGCAL---AHVGVMDMLRYH-------------------K--FTIG-HAWVSD 670 (789)
Q Consensus 616 d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v---~~~p~~d~~~~~-------------------~--~~~~-~~~~~e 670 (789)
+++.++|+|+||+++..+|..+|+..+.+| ...|........ + .... ..|...
T Consensus 128 --~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 205 (326)
T KOG1454|consen 128 --EPVSLVGHSLGGIVALKAAAYYPETVDSLVLLDLLGPPVYSTPKGIKGLRRLLDKFLSALELLIPLSLTEPVRLVSEG 205 (326)
T ss_pred --cceEEEEeCcHHHHHHHHHHhCcccccceeeecccccccccCCcchhHHHHhhhhhccHhhhcCccccccchhheeHh
Confidence 349999999999999999999999999998 444433221110 0 0000 001000
Q ss_pred --------cCCC-CcHHHHHHH------------------Hh-----cCcccCCCCCCCCCCCCCCCCCeEEEEecCCCC
Q 003878 671 --------FGCS-EEEEEFYWL------------------IK-----YSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDD 718 (789)
Q Consensus 671 --------~g~p-~~~~~~~~l------------------~~-----~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~ 718 (789)
+.++ ...+....+ .. ..+...++++ ...|+||++|+.|.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---------~~~pvlii~G~~D~ 276 (326)
T KOG1454|consen 206 LLRCLKVVYTDPSRLLEKLLHLLSRPVKEHFHRDARLSLFLELLGFDENLLSLIKKI---------WKCPVLIIWGDKDQ 276 (326)
T ss_pred hhcceeeeccccccchhhhhhheecccccchhhhheeeEEEeccCccchHHHhhccc---------cCCceEEEEcCcCC
Confidence 0111 000110000 00 1111233343 24899999999999
Q ss_pred CCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHH
Q 003878 719 RVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKM 782 (789)
Q Consensus 719 ~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 782 (789)
.+|.+.+..+.+.+. .+++++.+++||....... .+..+.+..|+.+.
T Consensus 277 ~~p~~~~~~~~~~~p--------------n~~~~~I~~~gH~~h~e~P--e~~~~~i~~Fi~~~ 324 (326)
T KOG1454|consen 277 IVPLELAEELKKKLP--------------NAELVEIPGAGHLPHLERP--EEVAALLRSFIARL 324 (326)
T ss_pred ccCHHHHHHHHhhCC--------------CceEEEeCCCCcccccCCH--HHHHHHHHHHHHHh
Confidence 999997777766552 2489999999998876444 36677888888765
No 139
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=98.85 E-value=1e-07 Score=122.84 Aligned_cols=239 Identities=13% Similarity=0.068 Sum_probs=131.7
Q ss_pred EEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHH
Q 003878 522 IPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDD 601 (789)
Q Consensus 522 i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D 601 (789)
+..++.+...-. ....|.||++||..+... .|.. ....|. .+|.|+++|.||.|.....-...........++++
T Consensus 1356 ~~~~i~~~~~G~-~~~~~~vVllHG~~~s~~--~w~~-~~~~L~-~~~rVi~~Dl~G~G~S~~~~~~~~~~~~~~~si~~ 1430 (1655)
T PLN02980 1356 FSCLIKVHEVGQ-NAEGSVVLFLHGFLGTGE--DWIP-IMKAIS-GSARCISIDLPGHGGSKIQNHAKETQTEPTLSVEL 1430 (1655)
T ss_pred eEEEEEEEecCC-CCCCCeEEEECCCCCCHH--HHHH-HHHHHh-CCCEEEEEcCCCCCCCCCccccccccccccCCHHH
Confidence 455555443211 224589999999876643 3443 344555 67999999999987653210000000112234666
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccc--ccc-------------cCC-c
Q 003878 602 FISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY--HKF-------------TIG-H 665 (789)
Q Consensus 602 ~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~--~~~-------------~~~-~ 665 (789)
+.+.+..++++ ...+++.++|+|+||.+++.++.++|++++++|+..+...+... ... ..+ .
T Consensus 1431 ~a~~l~~ll~~--l~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~p~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 1508 (1655)
T PLN02980 1431 VADLLYKLIEH--ITPGKVTLVGYSMGARIALYMALRFSDKIEGAVIISGSPGLKDEVARKIRSAKDDSRARMLIDHGLE 1508 (1655)
T ss_pred HHHHHHHHHHH--hCCCCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCCCccCchHHHHHHhhhhhHHHHHHHhhhHH
Confidence 66666655554 24469999999999999999999999999999876543211100 000 000 0
Q ss_pred cchhhcCCC-------CcHHHHH----------------HHHhcCcc------cCCCCCCCCCCCCCCCCCeEEEEecCC
Q 003878 666 AWVSDFGCS-------EEEEEFY----------------WLIKYSPL------HNVRRPWEQNPDKPFQYPSTLLLTADH 716 (789)
Q Consensus 666 ~~~~e~g~p-------~~~~~~~----------------~l~~~sP~------~~v~~~~~~~~~~~~~~pp~Li~~g~~ 716 (789)
.+...|..+ ..+...+ .+..++.. ..+.++ ..|+|+++|++
T Consensus 1509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dl~~~L~~I----------~~PtLlI~Ge~ 1578 (1655)
T PLN02980 1509 IFLENWYSGELWKSLRNHPHFNKIVASRLLHKDVPSLAKLLSDLSIGRQPSLWEDLKQC----------DTPLLLVVGEK 1578 (1655)
T ss_pred HHHHHhccHHHhhhhccCHHHHHHHHHHHhcCCHHHHHHHHHHhhhcccchHHHHHhhC----------CCCEEEEEECC
Confidence 000001000 0111000 11111100 112222 67999999999
Q ss_pred CCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHH
Q 003878 717 DDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKM 782 (789)
Q Consensus 717 D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 782 (789)
|..++ ..+.++.+.+.+..+.. ......-+++.+++++||....... ......+.+||.+.
T Consensus 1579 D~~~~-~~a~~~~~~i~~a~~~~--~~~~~~~a~lvvI~~aGH~~~lE~P--e~f~~~I~~FL~~~ 1639 (1655)
T PLN02980 1579 DVKFK-QIAQKMYREIGKSKESG--NDKGKEIIEIVEIPNCGHAVHLENP--LPVIRALRKFLTRL 1639 (1655)
T ss_pred CCccH-HHHHHHHHHcccccccc--ccccccceEEEEECCCCCchHHHCH--HHHHHHHHHHHHhc
Confidence 98764 66677766664320000 0000112689999999998765433 35667788898764
No 140
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.84 E-value=2.5e-06 Score=90.67 Aligned_cols=164 Identities=12% Similarity=0.019 Sum_probs=94.6
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
.+++|+|||+.+++.... ...++.++..+...... + ..... ...+.|+|||++|++.
T Consensus 118 ~~~~~~~dg~~l~~~~~~------------------~~~~~~~d~~~~~~~~~-~-~~~~~---~~~~~~s~dg~~l~~~ 174 (300)
T TIGR03866 118 EGMAVSPDGKIVVNTSET------------------TNMAHFIDTKTYEIVDN-V-LVDQR---PRFAEFTADGKELWVS 174 (300)
T ss_pred ceEEECCCCCEEEEEecC------------------CCeEEEEeCCCCeEEEE-E-EcCCC---ccEEEECCCCCEEEEE
Confidence 678999999998876432 12344555544321111 1 11111 2357899999999876
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec--------cccceeEEEecCCCEEEEEECCCCCCceEEEE
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID--------GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRV 389 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~ 389 (789)
... ...++++|+++++. ...+.. .....-..+++||+.+++... ++.+|.++
T Consensus 175 ~~~----~~~v~i~d~~~~~~-------------~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~---~~~~i~v~ 234 (300)
T TIGR03866 175 SEI----GGTVSVIDVATRKV-------------IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG---PANRVAVV 234 (300)
T ss_pred cCC----CCEEEEEEcCccee-------------eeeeeecccccccccCCccceEECCCCCEEEEEcC---CCCeEEEE
Confidence 422 35689999987521 111100 000011237899998776443 23578999
Q ss_pred ECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEE-EeCCeEEEEEEECCCCceeeecccC
Q 003878 390 DLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSY-LSDVKYVLQIRDLKNGSLLHQLPIE 449 (789)
Q Consensus 390 dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~-~~~g~~~L~~~dl~tG~~~~~l~~~ 449 (789)
|+++++ ....+... ..+..+++++++..++.. ..++ .|.+||+++++.++.+..+
T Consensus 235 d~~~~~-~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~--~i~v~d~~~~~~~~~~~~~ 290 (300)
T TIGR03866 235 DAKTYE-VLDYLLVG--QRVWQLAFTPDEKYLLTTNGVSN--DVSVIDVAALKVIKSIKVG 290 (300)
T ss_pred ECCCCc-EEEEEEeC--CCcceEEECCCCCEEEEEcCCCC--eEEEEECCCCcEEEEEEcc
Confidence 998765 22222222 345678888765444433 3343 7999999988876666543
No 141
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=98.82 E-value=2e-07 Score=97.42 Aligned_cols=260 Identities=15% Similarity=0.132 Sum_probs=166.4
Q ss_pred cEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccc
Q 003878 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRG 210 (789)
Q Consensus 131 ~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 210 (789)
+-.+....+|+|++.|| .|+=..+.+||...++..+. .+.+. .++.-+++-.|.. ++
T Consensus 175 ~rPis~~~fS~ds~~la-----T~swsG~~kvW~~~~~~~~~-~l~gH-------~~~v~~~~fhP~~--~~-------- 231 (459)
T KOG0272|consen 175 TRPISGCSFSRDSKHLA-----TGSWSGLVKVWSVPQCNLLQ-TLRGH-------TSRVGAAVFHPVD--SD-------- 231 (459)
T ss_pred CCcceeeEeecCCCeEE-----EeecCCceeEeecCCcceeE-EEecc-------ccceeeEEEccCC--Cc--------
Confidence 34577888999999998 34444589999998885443 22221 1122222222221 11
Q ss_pred ceeeEEEeeeccccceeeeeeec-----cc-----ccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEE
Q 003878 211 IFFFFYLFSLVKSTIYSFWSVVS-----QF-----KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYH 280 (789)
Q Consensus 211 ~~~~~~~~~s~~~g~~~l~~~~~-----~~-----~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 280 (789)
.-+.++..+|+..||.+.- ++ ++..++|.|+|+.|.-..++. .-.+|
T Consensus 232 ----~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~-------------------tWRlW 288 (459)
T KOG0272|consen 232 ----LNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDS-------------------TWRLW 288 (459)
T ss_pred ----cceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeeccccc-------------------chhhc
Confidence 3477888999999999876 22 247799999999998766553 24567
Q ss_pred ECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc
Q 003878 281 FLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD 360 (789)
Q Consensus 281 ~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 360 (789)
++.++.+ ++..+ .+...+.+++|-+||.-++-...+ +--.++|+.+|. ...-+.....
T Consensus 289 D~~tk~E---lL~QE-GHs~~v~~iaf~~DGSL~~tGGlD-----~~~RvWDlRtgr-------------~im~L~gH~k 346 (459)
T KOG0272|consen 289 DLETKSE---LLLQE-GHSKGVFSIAFQPDGSLAATGGLD-----SLGRVWDLRTGR-------------CIMFLAGHIK 346 (459)
T ss_pred ccccchh---hHhhc-ccccccceeEecCCCceeeccCcc-----chhheeecccCc-------------EEEEeccccc
Confidence 8877532 33333 234556789999999877643322 223456888852 1222333333
Q ss_pred ceeE-EEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEec-CCEEEEEEEeCCeEEEEEEECC
Q 003878 361 AQYE-VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN-LNQMIVSYLSDVKYVLQIRDLK 438 (789)
Q Consensus 361 ~~~~-~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~-~~~lv~~~~~~g~~~L~~~dl~ 438 (789)
..+. .|+|+|-+++- ++.+...-++|+......-.+..|. ..+..|-+.+ .+.++++..-|. .+.+|...
T Consensus 347 ~I~~V~fsPNGy~lAT----gs~Dnt~kVWDLR~r~~ly~ipAH~--nlVS~Vk~~p~~g~fL~TasyD~--t~kiWs~~ 418 (459)
T KOG0272|consen 347 EILSVAFSPNGYHLAT----GSSDNTCKVWDLRMRSELYTIPAHS--NLVSQVKYSPQEGYFLVTASYDN--TVKIWSTR 418 (459)
T ss_pred ceeeEeECCCceEEee----cCCCCcEEEeeecccccceeccccc--chhhheEecccCCeEEEEcccCc--ceeeecCC
Confidence 3443 39999987762 2344567778887655333333344 4567787776 477888887776 57778887
Q ss_pred CCceeeecccCCeeEEEeecccCCcEEE
Q 003878 439 NGSLLHQLPIEIGSVNAISARREDSVVF 466 (789)
Q Consensus 439 tG~~~~~l~~~~~~v~~~s~s~d~~~l~ 466 (789)
++...+.|..+.+.|.++..++|+..+.
T Consensus 419 ~~~~~ksLaGHe~kV~s~Dis~d~~~i~ 446 (459)
T KOG0272|consen 419 TWSPLKSLAGHEGKVISLDISPDSQAIA 446 (459)
T ss_pred CcccchhhcCCccceEEEEeccCCceEE
Confidence 7887788887788888888899887544
No 142
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=98.80 E-value=1.1e-07 Score=104.92 Aligned_cols=114 Identities=12% Similarity=0.027 Sum_probs=74.5
Q ss_pred CCccEEEEEcCCCCccCC----------CCCCHHH---HHHHHcCCeEEEEEeecCCCC--------CChhHHhcccc--
Q 003878 536 GSHPCLLYGYGGFNISVT----------PSFSVSR---TILMRHLGAVFCIANIRGGGE--------YGEEWHKGGAL-- 592 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~----------~~~~~~~---~~~l~~~G~~v~~~~~RG~g~--------~g~~~~~~~~~-- 592 (789)
.+.++||+.|+-.+.+.. ++|-... ...++-.-|-|+++|+=|++. .|+.-...+.+
T Consensus 54 ~~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n~lG~~~~~~p~~g~tgp~s~~p~tg~~ 133 (389)
T PRK06765 54 AKSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTDTLCNVQVKDPNVITTGPASINPKTGKP 133 (389)
T ss_pred CCCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEecccCCCcCCCCCCCCCCCCCCCcCCCCc
Confidence 456899999996553311 1221110 123344568999999998752 22221111111
Q ss_pred ---cCCcchHHHHHHHHHHHHHcCCCCCCcEE-EEeeChHHHHHHHHHHhCCCceeEEEecCC
Q 003878 593 ---AKKQNCFDDFISASEYLISAGYTQSRKLC-IEGGSNGGLLVGACINQRPDLFGCALAHVG 651 (789)
Q Consensus 593 ---~~~~~~~~D~~~~~~~L~~~~~~d~~~i~-i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p 651 (789)
.....++.|+.+++..|++.- .-+++. ++|+|+||.+++..+.++|++++.+|+.+.
T Consensus 134 ~~~~fP~~t~~d~~~~~~~ll~~l--gi~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~ia~ 194 (389)
T PRK06765 134 YGMDFPVVTILDFVRVQKELIKSL--GIARLHAVMGPSMGGMQAQEWAVHYPHMVERMIGVIG 194 (389)
T ss_pred cCCCCCcCcHHHHHHHHHHHHHHc--CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEec
Confidence 223467899988888888652 235775 999999999999999999999999887743
No 143
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.79 E-value=4.3e-06 Score=88.67 Aligned_cols=142 Identities=9% Similarity=0.122 Sum_probs=95.0
Q ss_pred EEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeE-EEecCCCEEEEEECCCCC
Q 003878 304 SGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYE-VIANDDTVFTFLTNKDAP 382 (789)
Q Consensus 304 ~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dG~~l~~~tn~~~~ 382 (789)
-..++-|++.+++...++ ..+-++|..+++ ......+...... ..++||+.+++ +| .
T Consensus 364 Y~r~~~~~e~~vigt~dg----D~l~iyd~~~~e--------------~kr~e~~lg~I~av~vs~dGK~~vv-aN---d 421 (668)
T COG4946 364 YRRIQVDPEGDVIGTNDG----DKLGIYDKDGGE--------------VKRIEKDLGNIEAVKVSPDGKKVVV-AN---D 421 (668)
T ss_pred EEEEccCCcceEEeccCC----ceEEEEecCCce--------------EEEeeCCccceEEEEEcCCCcEEEE-Ec---C
Confidence 345666777777666543 236667777753 1222223332222 37899987764 33 3
Q ss_pred CceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCe--EEEEEEECCCCceeeecccCCeeEEEeeccc
Q 003878 383 KYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVK--YVLQIRDLKNGSLLHQLPIEIGSVNAISARR 460 (789)
Q Consensus 383 ~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~--~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~ 460 (789)
+++|+++|++++. ..++..++...|.++.|+++.+.++..-..|. ..|.++|.++|+. -.++.|.+.-.+.++++
T Consensus 422 r~el~vididngn--v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki-y~vTT~ta~DfsPaFD~ 498 (668)
T COG4946 422 RFELWVIDIDNGN--VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI-YDVTTPTAYDFSPAFDP 498 (668)
T ss_pred ceEEEEEEecCCC--eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE-EEecCCcccccCcccCC
Confidence 6899999999997 55666666788999999997666666666663 4789999997776 56666633323578899
Q ss_pred CCcEEEEEEc
Q 003878 461 EDSVVFISFT 470 (789)
Q Consensus 461 d~~~l~~~~s 470 (789)
|++.++|...
T Consensus 499 d~ryLYfLs~ 508 (668)
T COG4946 499 DGRYLYFLSA 508 (668)
T ss_pred CCcEEEEEec
Confidence 9998887544
No 144
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=98.78 E-value=3.6e-08 Score=109.94 Aligned_cols=143 Identities=19% Similarity=0.212 Sum_probs=108.0
Q ss_pred CcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCC--HHHHH---HHHcCCeEEEEEeecCCC
Q 003878 506 FHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFS--VSRTI---LMRHLGAVFCIANIRGGG 580 (789)
Q Consensus 506 ~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~--~~~~~---~l~~~G~~v~~~~~RG~g 580 (789)
+..+.+.++.+|| ++|..-||+|++. ++.|+++...=.+-......+. ..... +++.+||+|+..|.||.+
T Consensus 17 ~~~~~v~V~MRDG-vrL~~dIy~Pa~~---g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa~GYavV~qDvRG~~ 92 (563)
T COG2936 17 YIERDVMVPMRDG-VRLAADIYRPAGA---GPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAAQGYAVVNQDVRGRG 92 (563)
T ss_pred eeeeeeeEEecCC-eEEEEEEEccCCC---CCCceeEEeeccccccccccCcchhhcccccceeecCceEEEEecccccc
Confidence 5667789999999 9999999999974 8899999887322111111111 11111 344499999999999987
Q ss_pred CCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccc
Q 003878 581 EYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY 658 (789)
Q Consensus 581 ~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~ 658 (789)
+....|-.- .. ...+|-.++|+||.++.+.+ .+|+.+|.|++|+...++|+..|--.||++...+..|+.+.
T Consensus 93 ~SeG~~~~~----~~-~E~~Dg~D~I~Wia~QpWsN-G~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D~y~d 164 (563)
T COG2936 93 GSEGVFDPE----SS-REAEDGYDTIEWLAKQPWSN-GNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVDRYRD 164 (563)
T ss_pred cCCccccee----cc-ccccchhHHHHHHHhCCccC-CeeeeecccHHHHHHHHHHhcCCchheeecccccccccccc
Confidence 654443221 11 36689999999999999977 78999999999999999998888888999999999887543
No 145
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.76 E-value=1.5e-05 Score=85.77 Aligned_cols=113 Identities=12% Similarity=0.195 Sum_probs=69.8
Q ss_pred Eec-CCCEEEEEECCCCCCceEEEEECCCCC-----CeEEeccCCC-----CceeeeEEEecC-CEEEEEEEe-------
Q 003878 366 IAN-DDTVFTFLTNKDAPKYKIIRVDLKEPN-----DWFEVIPEAE-----RDVLESATAVNL-NQMIVSYLS------- 426 (789)
Q Consensus 366 ~s~-dG~~l~~~tn~~~~~~~L~~~dl~~~~-----~~~~l~~~~~-----~~~i~~v~~~~~-~~lv~~~~~------- 426 (789)
+++ ||+. +|.+++ +.|+.+|+.+.+ .|..+..... ..-.+.++++++ +++|+....
T Consensus 201 ~~~~dg~~-~~vs~e----G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk 275 (352)
T TIGR02658 201 YSNKSGRL-VWPTYT----GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHK 275 (352)
T ss_pred eEcCCCcE-EEEecC----CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCcccccc
Confidence 355 6654 555654 689999975532 2333221110 112344778864 566664421
Q ss_pred CCeEEEEEEECCCCceeeecccCCeeEEEeecccCCc-EEEEEEcCCCCCcEEEEEECCCCC
Q 003878 427 DVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDS-VVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 427 ~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~-~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
++-.+|+++|.++++.+..+..... +.++.+++|++ .++. .+. ....+..+|..+++
T Consensus 276 ~~~~~V~ViD~~t~kvi~~i~vG~~-~~~iavS~Dgkp~lyv-tn~--~s~~VsViD~~t~k 333 (352)
T TIGR02658 276 TASRFLFVVDAKTGKRLRKIELGHE-IDSINVSQDAKPLLYA-LST--GDKTLYIFDAETGK 333 (352)
T ss_pred CCCCEEEEEECCCCeEEEEEeCCCc-eeeEEECCCCCeEEEE-eCC--CCCcEEEEECcCCe
Confidence 2225899999999988777776543 44678999999 5554 332 35678999998885
No 146
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.75 E-value=1.7e-07 Score=97.33 Aligned_cols=129 Identities=16% Similarity=0.182 Sum_probs=79.0
Q ss_pred CcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChh
Q 003878 506 FHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEE 585 (789)
Q Consensus 506 ~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~ 585 (789)
+..+.+.+. ++ .++-..-+.+.. ...+-+|++|| ||..... |...+ .-|+ ....|.++|..|.|...+.
T Consensus 65 ~~~~~v~i~--~~-~~iw~~~~~~~~----~~~~plVliHG-yGAg~g~-f~~Nf-~~La-~~~~vyaiDllG~G~SSRP 133 (365)
T KOG4409|consen 65 YSKKYVRIP--NG-IEIWTITVSNES----ANKTPLVLIHG-YGAGLGL-FFRNF-DDLA-KIRNVYAIDLLGFGRSSRP 133 (365)
T ss_pred cceeeeecC--CC-ceeEEEeecccc----cCCCcEEEEec-cchhHHH-HHHhh-hhhh-hcCceEEecccCCCCCCCC
Confidence 444445444 44 444333333322 33455667777 3433222 22222 3344 4889999999997754332
Q ss_pred -HHhcccccCCcchHHHHHHHHH-HHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcc
Q 003878 586 -WHKGGALAKKQNCFDDFISASE-YLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 653 (789)
Q Consensus 586 -~~~~~~~~~~~~~~~D~~~~~~-~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~ 653 (789)
|. ......-.-+++.++ |-++.+. +++.++|||+||+|+..+|.++|++++-.|+..|.-
T Consensus 134 ~F~-----~d~~~~e~~fvesiE~WR~~~~L---~KmilvGHSfGGYLaa~YAlKyPerV~kLiLvsP~G 195 (365)
T KOG4409|consen 134 KFS-----IDPTTAEKEFVESIEQWRKKMGL---EKMILVGHSFGGYLAAKYALKYPERVEKLILVSPWG 195 (365)
T ss_pred CCC-----CCcccchHHHHHHHHHHHHHcCC---cceeEeeccchHHHHHHHHHhChHhhceEEEecccc
Confidence 11 112222335666666 4455555 489999999999999999999999999999887743
No 147
>PRK05855 short chain dehydrogenase; Validated
Probab=98.73 E-value=1.5e-07 Score=110.75 Aligned_cols=106 Identities=12% Similarity=0.131 Sum_probs=67.5
Q ss_pred ecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhccccc
Q 003878 514 PSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALA 593 (789)
Q Consensus 514 ~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~ 593 (789)
...|| .+|.+..+- +...|.||++||..+... .|.. +...|. +||.|+++|+||.|..... ..
T Consensus 8 ~~~~g-~~l~~~~~g------~~~~~~ivllHG~~~~~~--~w~~-~~~~L~-~~~~Vi~~D~~G~G~S~~~------~~ 70 (582)
T PRK05855 8 VSSDG-VRLAVYEWG------DPDRPTVVLVHGYPDNHE--VWDG-VAPLLA-DRFRVVAYDVRGAGRSSAP------KR 70 (582)
T ss_pred EeeCC-EEEEEEEcC------CCCCCeEEEEcCCCchHH--HHHH-HHHHhh-cceEEEEecCCCCCCCCCC------Cc
Confidence 34588 888765432 123689999999865532 3443 345565 8999999999998754321 11
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCC-cEEEEeeChHHHHHHHHHHh
Q 003878 594 KKQNCFDDFISASEYLISAGYTQSR-KLCIEGGSNGGLLVGACINQ 638 (789)
Q Consensus 594 ~~~~~~~D~~~~~~~L~~~~~~d~~-~i~i~G~S~GG~l~~~~~~~ 638 (789)
....+++++.+-+..+++. .... .+.++|||+||.++..++.+
T Consensus 71 ~~~~~~~~~a~dl~~~i~~--l~~~~~~~lvGhS~Gg~~a~~~a~~ 114 (582)
T PRK05855 71 TAAYTLARLADDFAAVIDA--VSPDRPVHLLAHDWGSIQGWEAVTR 114 (582)
T ss_pred ccccCHHHHHHHHHHHHHH--hCCCCcEEEEecChHHHHHHHHHhC
Confidence 1123455555555555543 1223 49999999999888777655
No 148
>PTZ00421 coronin; Provisional
Probab=98.73 E-value=2.4e-06 Score=97.08 Aligned_cols=214 Identities=14% Similarity=0.047 Sum_probs=120.4
Q ss_pred CcEEEEeEEeCC-CCcEEEEEEecCCceEEEEEEEEcCCCceecc---cccccccccccCccceeeeeeccccccccccc
Q 003878 130 GTAALIKVSVSE-DAKYLAYALSYSGSDWATIKLMRIEDQIVEAD---ALSWVCFCFSHSFGYFFHLTISLLNVPTYKLF 205 (789)
Q Consensus 130 ~~~~~~~~~~Sp-Dg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 205 (789)
+...+..+.||| |+++||- |++..+|++||+.++..... .+... ..| .
T Consensus 74 H~~~V~~v~fsP~d~~~LaS-----gS~DgtIkIWdi~~~~~~~~~~~~l~~L----~gH---------------~---- 125 (493)
T PTZ00421 74 QEGPIIDVAFNPFDPQKLFT-----ASEDGTIMGWGIPEEGLTQNISDPIVHL----QGH---------------T---- 125 (493)
T ss_pred CCCCEEEEEEcCCCCCEEEE-----EeCCCEEEEEecCCCccccccCcceEEe----cCC---------------C----
Confidence 445688999999 8888873 34456899999987632110 00000 000 0
Q ss_pred cccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCC
Q 003878 206 LYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTK 285 (789)
Q Consensus 206 ~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~ 285 (789)
-....++|+|++..++++.. ....|.+|++.+.
T Consensus 126 -----------------------------~~V~~l~f~P~~~~iLaSgs------------------~DgtVrIWDl~tg 158 (493)
T PTZ00421 126 -----------------------------KKVGIVSFHPSAMNVLASAG------------------ADMVVNVWDVERG 158 (493)
T ss_pred -----------------------------CcEEEEEeCcCCCCEEEEEe------------------CCCEEEEEECCCC
Confidence 02578999999765555422 2346889999765
Q ss_pred CCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc--cee
Q 003878 286 QSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD--AQY 363 (789)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~--~~~ 363 (789)
. ....+. .+...+.++.|+|||+.|+..+. ...|.++|+.++. ....+..... ...
T Consensus 159 ~--~~~~l~--~h~~~V~sla~spdG~lLatgs~-----Dg~IrIwD~rsg~-------------~v~tl~~H~~~~~~~ 216 (493)
T PTZ00421 159 K--AVEVIK--CHSDQITSLEWNLDGSLLCTTSK-----DKKLNIIDPRDGT-------------IVSSVEAHASAKSQR 216 (493)
T ss_pred e--EEEEEc--CCCCceEEEEEECCCCEEEEecC-----CCEEEEEECCCCc-------------EEEEEecCCCCcceE
Confidence 3 222333 23344678999999998876543 3458899988742 1222221111 112
Q ss_pred EEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEE-EeCCeEEEEEEECCCCce
Q 003878 364 EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSY-LSDVKYVLQIRDLKNGSL 442 (789)
Q Consensus 364 ~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~-~~~g~~~L~~~dl~tG~~ 442 (789)
..|.+++..++........+..|..+|+.................+....++++..+++.. ..++ .|++|++.+++.
T Consensus 217 ~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg--~Iriwdl~~~~~ 294 (493)
T PTZ00421 217 CLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEG--NIRCFELMNERL 294 (493)
T ss_pred EEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCC--eEEEEEeeCCce
Confidence 4577877766544322234568999998765411112111111222233445544444444 3354 788999886654
No 149
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=98.72 E-value=1.9e-05 Score=78.86 Aligned_cols=197 Identities=12% Similarity=0.049 Sum_probs=127.8
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
...++-|+||...+ + ......+++|++.+++.. ..|.... ..+.++++|+|.++|+-
T Consensus 66 v~dv~~s~dg~~al-S------------------~swD~~lrlWDl~~g~~t--~~f~GH~--~dVlsva~s~dn~qivS 122 (315)
T KOG0279|consen 66 VSDVVLSSDGNFAL-S------------------ASWDGTLRLWDLATGEST--RRFVGHT--KDVLSVAFSTDNRQIVS 122 (315)
T ss_pred ecceEEccCCceEE-e------------------ccccceEEEEEecCCcEE--EEEEecC--CceEEEEecCCCceeec
Confidence 47888999997665 3 234456999999987443 3444432 34678999999999975
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecc--ccc-eeEEEecCCCEEEEEECCCCCCceEEEEECCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG--FDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKE 393 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~--~~~-~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~ 393 (789)
.+. ...|-+++.-+. +...+..+ .+- ....|+|+....++++.. .+..|-++|+.+
T Consensus 123 GSr-----DkTiklwnt~g~--------------ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s--~DktvKvWnl~~ 181 (315)
T KOG0279|consen 123 GSR-----DKTIKLWNTLGV--------------CKYTIHEDSHREWVSCVRFSPNESNPIIVSAS--WDKTVKVWNLRN 181 (315)
T ss_pred CCC-----cceeeeeeeccc--------------EEEEEecCCCcCcEEEEEEcCCCCCcEEEEcc--CCceEEEEccCC
Confidence 442 344777776652 11122222 111 123489986566665543 345688899988
Q ss_pred CCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCC
Q 003878 394 PNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFL 473 (789)
Q Consensus 394 ~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~ 473 (789)
.+-....+.+. .++..+++++|+.+.++...+| ++++||++.|+.+..+.. ...|.++.++|+.-.+...
T Consensus 182 ~~l~~~~~gh~--~~v~t~~vSpDGslcasGgkdg--~~~LwdL~~~k~lysl~a-~~~v~sl~fspnrywL~~a----- 251 (315)
T KOG0279|consen 182 CQLRTTFIGHS--GYVNTVTVSPDGSLCASGGKDG--EAMLWDLNEGKNLYSLEA-FDIVNSLCFSPNRYWLCAA----- 251 (315)
T ss_pred cchhhcccccc--ccEEEEEECCCCCEEecCCCCc--eEEEEEccCCceeEeccC-CCeEeeEEecCCceeEeec-----
Confidence 76222333333 6788999999889999887776 889999998876554432 4457778888865444432
Q ss_pred CCcEEEEEECCCCC
Q 003878 474 IPGIVYQCNLKTET 487 (789)
Q Consensus 474 ~P~~ly~~dl~tg~ 487 (789)
+...|-.+|++++.
T Consensus 252 t~~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 252 TATSIKIWDLESKA 265 (315)
T ss_pred cCCceEEEeccchh
Confidence 33358889998875
No 150
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=98.69 E-value=2.2e-07 Score=101.90 Aligned_cols=127 Identities=16% Similarity=0.150 Sum_probs=66.2
Q ss_pred eEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCC------ChhHHhcc---
Q 003878 520 TKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEY------GEEWHKGG--- 590 (789)
Q Consensus 520 ~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~------g~~~~~~~--- 590 (789)
.++|+..-.| ....++.|+||+.||-.+... .|+..+..+.. +||+|++++.|-+... ...-....
T Consensus 84 ~~~pa~~~a~--~~~~~~~PvvIFSHGlgg~R~--~yS~~~~eLAS-~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~ 158 (379)
T PF03403_consen 84 IRIPAYWNAP--LSPPGKFPVVIFSHGLGGSRT--SYSAICGELAS-HGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYV 158 (379)
T ss_dssp -EESSEET----B--SS-EEEEEEE--TT--TT--TTHHHHHHHHH-TT-EEEEE---SS-SSEEEE-SSHHHHHHT---
T ss_pred cccccccCcc--cccCCCCCEEEEeCCCCcchh--hHHHHHHHHHh-CCeEEEEeccCCCceeEEEeccCCCcccccccc
Confidence 5555532222 223378999999999877643 45655555555 9999999999965321 11100000
Q ss_pred ----c------ccC-Ccch-----------HHHHHHHHHHHHH--c------------------CCCCCCcEEEEeeChH
Q 003878 591 ----A------LAK-KQNC-----------FDDFISASEYLIS--A------------------GYTQSRKLCIEGGSNG 628 (789)
Q Consensus 591 ----~------~~~-~~~~-----------~~D~~~~~~~L~~--~------------------~~~d~~~i~i~G~S~G 628 (789)
. ... .... ..|+..+++.|.+ . +-+|.++|+++|||+|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFG 238 (379)
T PF03403_consen 159 VEYLEEEWIPLRDFDPEEEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFG 238 (379)
T ss_dssp ------EEEE-----GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHH
T ss_pred ccccccceeccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCch
Confidence 0 000 0111 2466667776653 1 3357889999999999
Q ss_pred HHHHHHHHHhCCCceeEEEecCCc
Q 003878 629 GLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 629 G~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
|..++.++.+. .+|+|+|+.-|.
T Consensus 239 GATa~~~l~~d-~r~~~~I~LD~W 261 (379)
T PF03403_consen 239 GATALQALRQD-TRFKAGILLDPW 261 (379)
T ss_dssp HHHHHHHHHH--TT--EEEEES--
T ss_pred HHHHHHHHhhc-cCcceEEEeCCc
Confidence 99999988885 689999976663
No 151
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=98.66 E-value=6.2e-08 Score=98.78 Aligned_cols=78 Identities=21% Similarity=0.108 Sum_probs=62.8
Q ss_pred eEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEe
Q 003878 569 AVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALA 648 (789)
Q Consensus 569 ~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~ 648 (789)
|.|+++|.||.|...+. ..........+|+.+.++.+++.--. +++.++|+|+||.+++.++.++|++++++|+
T Consensus 1 f~vi~~d~rG~g~S~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl 74 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPH----WDPDFPDYTTDDLAADLEALREALGI--KKINLVGHSMGGMLALEYAAQYPERVKKLVL 74 (230)
T ss_dssp EEEEEEECTTSTTSSSC----CGSGSCTHCHHHHHHHHHHHHHHHTT--SSEEEEEETHHHHHHHHHHHHSGGGEEEEEE
T ss_pred CEEEEEeCCCCCCCCCC----ccCCcccccHHHHHHHHHHHHHHhCC--CCeEEEEECCChHHHHHHHHHCchhhcCcEE
Confidence 67999999998864321 11334456689999999999886333 4599999999999999999999999999999
Q ss_pred cCCc
Q 003878 649 HVGV 652 (789)
Q Consensus 649 ~~p~ 652 (789)
..++
T Consensus 75 ~~~~ 78 (230)
T PF00561_consen 75 ISPP 78 (230)
T ss_dssp ESES
T ss_pred Eeee
Confidence 9885
No 152
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=98.63 E-value=2.4e-05 Score=78.70 Aligned_cols=244 Identities=11% Similarity=0.091 Sum_probs=146.2
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCcee---cccccccccccccCccceeeeeecccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVE---ADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFL 206 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 206 (789)
+...|..+.||+|.++|+= ++....+-|||.-|...+ +..-.|
T Consensus 54 H~~Ki~~~~ws~Dsr~ivS-----aSqDGklIvWDs~TtnK~haipl~s~W----------------------------- 99 (343)
T KOG0286|consen 54 HLNKIYAMDWSTDSRRIVS-----ASQDGKLIVWDSFTTNKVHAIPLPSSW----------------------------- 99 (343)
T ss_pred cccceeeeEecCCcCeEEe-----eccCCeEEEEEcccccceeEEecCcee-----------------------------
Confidence 3345778899999999973 333447999999887433 222223
Q ss_pred ccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCC
Q 003878 207 YLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQ 286 (789)
Q Consensus 207 ~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~ 286 (789)
+..-++||.|+.++-...+ ....|| .+.+..
T Consensus 100 ------------------------------VMtCA~sPSg~~VAcGGLd-----------------N~Csiy--~ls~~d 130 (343)
T KOG0286|consen 100 ------------------------------VMTCAYSPSGNFVACGGLD-----------------NKCSIY--PLSTRD 130 (343)
T ss_pred ------------------------------EEEEEECCCCCeEEecCcC-----------------ceeEEE--eccccc
Confidence 3678999999988854322 122344 443332
Q ss_pred CC--cEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee-
Q 003878 287 SE--DILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY- 363 (789)
Q Consensus 287 ~~--~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~- 363 (789)
.+ ....-+.+.+..|+....+.+|+..|- .+ + ....-++|++++. .............
T Consensus 131 ~~g~~~v~r~l~gHtgylScC~f~dD~~ilT-~S--G---D~TCalWDie~g~-------------~~~~f~GH~gDV~s 191 (343)
T KOG0286|consen 131 AEGNVRVSRELAGHTGYLSCCRFLDDNHILT-GS--G---DMTCALWDIETGQ-------------QTQVFHGHTGDVMS 191 (343)
T ss_pred ccccceeeeeecCccceeEEEEEcCCCceEe-cC--C---CceEEEEEcccce-------------EEEEecCCcccEEE
Confidence 11 122223345667776777877776442 21 2 3557788999852 1112222111112
Q ss_pred EEEec-CCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCce
Q 003878 364 EVIAN-DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSL 442 (789)
Q Consensus 364 ~~~s~-dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~ 442 (789)
..++| +++.|+ + ++-+..-+++|+..+. ...-++.. +..|.++.++|++.-+++.++|+. .+++|+...+.
T Consensus 192 lsl~p~~~ntFv--S--g~cD~~aklWD~R~~~-c~qtF~gh-esDINsv~ffP~G~afatGSDD~t--cRlyDlRaD~~ 263 (343)
T KOG0286|consen 192 LSLSPSDGNTFV--S--GGCDKSAKLWDVRSGQ-CVQTFEGH-ESDINSVRFFPSGDAFATGSDDAT--CRLYDLRADQE 263 (343)
T ss_pred EecCCCCCCeEE--e--cccccceeeeeccCcc-eeEeeccc-ccccceEEEccCCCeeeecCCCce--eEEEeecCCcE
Confidence 22677 777655 2 2334567778988875 33334433 356889999998788888999984 45567765554
Q ss_pred eeecccC--CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 443 LHQLPIE--IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 443 ~~~l~~~--~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
+.....+ ...+.++.+|..|+.++..|..+ +...||.-.++
T Consensus 264 ~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~----~c~vWDtlk~e 306 (343)
T KOG0286|consen 264 LAVYSHDSIICGITSVAFSKSGRLLFAGYDDF----TCNVWDTLKGE 306 (343)
T ss_pred EeeeccCcccCCceeEEEcccccEEEeeecCC----ceeEeeccccc
Confidence 3333322 45567788888888776656655 67788865554
No 153
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.62 E-value=1.4e-05 Score=90.78 Aligned_cols=246 Identities=17% Similarity=0.112 Sum_probs=147.4
Q ss_pred cEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCce-ecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIV-EADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 131 ~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
...+..+.+||||++++.+.. ...+++|++.++.. +...+... ..
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~-----~~~i~~~~~~~~~~~~~~~l~~h------~~----------------------- 204 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASS-----DGLIRIWKLEGIKSNLLRELSGH------TR----------------------- 204 (456)
T ss_pred cCceEEEEEcCCCCeEEEccC-----CCcEEEeecccccchhhcccccc------cc-----------------------
Confidence 345667889999999886543 34788888866651 11122111 11
Q ss_pred cceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCc
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED 289 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~ 289 (789)
....++|||||+.|+=. ....++++|++-. ...-
T Consensus 205 --------------------------~v~~~~fs~d~~~l~s~-------------------s~D~tiriwd~~~-~~~~ 238 (456)
T KOG0266|consen 205 --------------------------GVSDVAFSPDGSYLLSG-------------------SDDKTLRIWDLKD-DGRN 238 (456)
T ss_pred --------------------------ceeeeEECCCCcEEEEe-------------------cCCceEEEeeccC-CCeE
Confidence 25889999999966533 2335689999832 2222
Q ss_pred EEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccce-eEEEec
Q 003878 290 ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ-YEVIAN 368 (789)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~ 368 (789)
..++. .+..++..+.|+|+|+.++..+. ...|.++|+.+++ +...+....+.. ...+++
T Consensus 239 ~~~l~--gH~~~v~~~~f~p~g~~i~Sgs~-----D~tvriWd~~~~~-------------~~~~l~~hs~~is~~~f~~ 298 (456)
T KOG0266|consen 239 LKTLK--GHSTYVTSVAFSPDGNLLVSGSD-----DGTVRIWDVRTGE-------------CVRKLKGHSDGISGLAFSP 298 (456)
T ss_pred EEEec--CCCCceEEEEecCCCCEEEEecC-----CCcEEEEeccCCe-------------EEEeeeccCCceEEEEECC
Confidence 33333 45566789999999965554443 3458889998742 223333322222 234788
Q ss_pred CCCEEEEEECCCCCCceEEEEECCCCCC--eEEeccCCCCc-eeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeee
Q 003878 369 DDTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERD-VLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQ 445 (789)
Q Consensus 369 dG~~l~~~tn~~~~~~~L~~~dl~~~~~--~~~l~~~~~~~-~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~ 445 (789)
||..|+.. ..++.|..+|+.++.. ...+.... .. .+..+.+++++..++....++ .+.+|++..+.....
T Consensus 299 d~~~l~s~----s~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~fsp~~~~ll~~~~d~--~~~~w~l~~~~~~~~ 371 (456)
T KOG0266|consen 299 DGNLLVSA----SYDGTIRVWDLETGSKLCLKLLSGAE-NSAPVTSVQFSPNGKYLLSASLDR--TLKLWDLRSGKSVGT 371 (456)
T ss_pred CCCEEEEc----CCCccEEEEECCCCceeeeecccCCC-CCCceeEEEECCCCcEEEEecCCC--eEEEEEccCCcceee
Confidence 88876643 2357899999988761 12333222 23 567788888655555565554 788999987766555
Q ss_pred cccCCe---eEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 446 LPIEIG---SVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 446 l~~~~~---~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
...... .+.....+..+..++. -.....++.+|+.++.
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~i~s----g~~d~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 372 YTGHSNLVRCIFSPTLSTGGKLIYS----GSEDGSVYVWDSSSGG 412 (456)
T ss_pred ecccCCcceeEecccccCCCCeEEE----EeCCceEEEEeCCccc
Confidence 544322 2323333455554442 2345688999988763
No 154
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.62 E-value=3.1e-06 Score=84.37 Aligned_cols=102 Identities=13% Similarity=0.089 Sum_probs=64.3
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
...++|+|+|+.|+++... .+.++.++++. .+ .+...+.. ....+.|||+|++|++
T Consensus 62 I~~~~WsP~g~~favi~g~-----------------~~~~v~lyd~~---~~--~i~~~~~~--~~n~i~wsP~G~~l~~ 117 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIYGS-----------------MPAKVTLYDVK---GK--KIFSFGTQ--PRNTISWSPDGRFLVL 117 (194)
T ss_pred eEEEEECcCCCEEEEEEcc-----------------CCcccEEEcCc---cc--EeEeecCC--CceEEEECCCCCEEEE
Confidence 5789999999999887532 22356677764 22 22222222 2346899999999998
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEEC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTN 378 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn 378 (789)
...... ..++.++|+.+.+ .+ ............|||||++|+..+.
T Consensus 118 ~g~~n~--~G~l~~wd~~~~~-------------~i-~~~~~~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 118 AGFGNL--NGDLEFWDVRKKK-------------KI-STFEHSDATDVEWSPDGRYLATATT 163 (194)
T ss_pred EEccCC--CcEEEEEECCCCE-------------Ee-eccccCcEEEEEEcCCCCEEEEEEe
Confidence 764332 3568889988631 11 1112223334569999999887654
No 155
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.62 E-value=1.6e-05 Score=87.22 Aligned_cols=285 Identities=15% Similarity=0.096 Sum_probs=138.9
Q ss_pred EEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccccee
Q 003878 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFF 213 (789)
Q Consensus 134 ~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 213 (789)
...+.+||||+++ |..+..| .|.++|+.+++.+...-.+.
T Consensus 39 h~~~~~s~Dgr~~-yv~~rdg----~vsviD~~~~~~v~~i~~G~----------------------------------- 78 (369)
T PF02239_consen 39 HAGLKFSPDGRYL-YVANRDG----TVSVIDLATGKVVATIKVGG----------------------------------- 78 (369)
T ss_dssp EEEEE-TT-SSEE-EEEETTS----EEEEEETTSSSEEEEEE-SS-----------------------------------
T ss_pred eeEEEecCCCCEE-EEEcCCC----eEEEEECCcccEEEEEecCC-----------------------------------
Confidence 3456799999986 4455444 69999999998765321111
Q ss_pred eEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEE
Q 003878 214 FFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCW 293 (789)
Q Consensus 214 ~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~ 293 (789)
...+++.|+||++++.+.. .+.++.+++..+-..-..+-.
T Consensus 79 ----------------------~~~~i~~s~DG~~~~v~n~------------------~~~~v~v~D~~tle~v~~I~~ 118 (369)
T PF02239_consen 79 ----------------------NPRGIAVSPDGKYVYVANY------------------EPGTVSVIDAETLEPVKTIPT 118 (369)
T ss_dssp ----------------------EEEEEEE--TTTEEEEEEE------------------ETTEEEEEETTT--EEEEEE-
T ss_pred ----------------------CcceEEEcCCCCEEEEEec------------------CCCceeEeccccccceeeccc
Confidence 2367999999999987743 234566666655322111111
Q ss_pred e-cCC--CCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec-cccceeEEEecC
Q 003878 294 K-DPE--HPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-GFDAQYEVIAND 369 (789)
Q Consensus 294 ~-~~~--~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~s~d 369 (789)
. .+. ......++.-||++...++...+ ..+||++|..+.. .. ...... +....-..|+|+
T Consensus 119 ~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd----~~~I~vVdy~d~~-----------~~-~~~~i~~g~~~~D~~~dpd 182 (369)
T PF02239_consen 119 GGMPVDGPESRVAAIVASPGRPEFVVNLKD----TGEIWVVDYSDPK-----------NL-KVTTIKVGRFPHDGGFDPD 182 (369)
T ss_dssp -EE-TTTS---EEEEEE-SSSSEEEEEETT----TTEEEEEETTTSS-----------CE-EEEEEE--TTEEEEEE-TT
T ss_pred ccccccccCCCceeEEecCCCCEEEEEEcc----CCeEEEEEecccc-----------cc-ceeeecccccccccccCcc
Confidence 1 000 11223456678888877666543 4679999987631 11 111111 111122458999
Q ss_pred CCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCC-C--ceeeeEEEecCCEEEEEEEeCCeE--------EEEEEECC
Q 003878 370 DTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAE-R--DVLESATAVNLNQMIVSYLSDVKY--------VLQIRDLK 438 (789)
Q Consensus 370 G~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~-~--~~i~~v~~~~~~~lv~~~~~~g~~--------~L~~~dl~ 438 (789)
|++++...+.. .+|..+|+++++ ...++.-.. . ..+..+ +.+....+......+.. .+.+++..
T Consensus 183 gry~~va~~~s---n~i~viD~~~~k-~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~ 257 (369)
T PF02239_consen 183 GRYFLVAANGS---NKIAVIDTKTGK-LVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDY 257 (369)
T ss_dssp SSEEEEEEGGG---TEEEEEETTTTE-EEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTT
T ss_pred cceeeeccccc---ceeEEEeeccce-EEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhh
Confidence 99988766542 388888988765 222222110 0 111111 12212222222222211 12234555
Q ss_pred CCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCCceEEEeeeccCCCCCCCCCcEEEEEEecCCC
Q 003878 439 NGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDG 518 (789)
Q Consensus 439 tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~dg 518 (789)
+.+.+++|+.+.+.+ .+..+|+++.+++....-..-..+..+|..+.+ ....+... + ....-++.| ++||
T Consensus 258 ~wkvv~~I~~~G~gl-Fi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~-~~~~i~~~--~-----~~~~~h~ef-~~dG 327 (369)
T PF02239_consen 258 AWKVVKTIPTQGGGL-FIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK-VVKTITPG--P-----GKRVVHMEF-NPDG 327 (369)
T ss_dssp BTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE-EEE-HHHH--H-----T--EEEEEE--TTS
T ss_pred cCeEEEEEECCCCcc-eeecCCCCccEEeeccCCCCCceEEEEECcCcc-eeEEEecc--C-----CCcEeccEE-CCCC
Confidence 556667777653333 567789999999873222336799999987763 11121110 0 112344555 4678
Q ss_pred ceEEEEEEEecC
Q 003878 519 STKIPMFIVSKK 530 (789)
Q Consensus 519 ~~~i~~~l~~p~ 530 (789)
.++-+++...+
T Consensus 328 -~~v~vS~~~~~ 338 (369)
T PF02239_consen 328 -KEVWVSVWDGN 338 (369)
T ss_dssp -SEEEEEEE--T
T ss_pred -CEEEEEEecCC
Confidence 77776665433
No 156
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.60 E-value=2.6e-05 Score=87.38 Aligned_cols=214 Identities=14% Similarity=0.130 Sum_probs=145.0
Q ss_pred eccccceeeeeeec----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCc
Q 003878 220 LVKSTIYSFWSVVS----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED 289 (789)
Q Consensus 220 s~~~g~~~l~~~~~----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~ 289 (789)
.=.+|.+.||.+|. +.+...++|.-.|.+|++.. .+--++.+|+..+.
T Consensus 283 gFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~------------------~klgQLlVweWqsE---- 340 (893)
T KOG0291|consen 283 GFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGC------------------SKLGQLLVWEWQSE---- 340 (893)
T ss_pred EecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcC------------------CccceEEEEEeecc----
Confidence 33678888888887 45667899999999999863 22335666666432
Q ss_pred EEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee-EEEec
Q 003878 290 ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIAN 368 (789)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~ 368 (789)
.-|++...|-..+..++.||||++|+-.+. ...|.++|...| .++........... ..|+.
T Consensus 341 sYVlKQQgH~~~i~~l~YSpDgq~iaTG~e-----DgKVKvWn~~Sg-------------fC~vTFteHts~Vt~v~f~~ 402 (893)
T KOG0291|consen 341 SYVLKQQGHSDRITSLAYSPDGQLIATGAE-----DGKVKVWNTQSG-------------FCFVTFTEHTSGVTAVQFTA 402 (893)
T ss_pred ceeeeccccccceeeEEECCCCcEEEeccC-----CCcEEEEeccCc-------------eEEEEeccCCCceEEEEEEe
Confidence 234444444445678899999999986654 355888887763 23333322221111 23777
Q ss_pred CCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeeccc
Q 003878 369 DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI 448 (789)
Q Consensus 369 dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~ 448 (789)
+|+.++ .+.. ++.+-.+|+......++.+.+.+ .....++..+.+-+++....+. -.|++|+.+||+.+..|..
T Consensus 403 ~g~~ll-ssSL---DGtVRAwDlkRYrNfRTft~P~p-~QfscvavD~sGelV~AG~~d~-F~IfvWS~qTGqllDiLsG 476 (893)
T KOG0291|consen 403 RGNVLL-SSSL---DGTVRAWDLKRYRNFRTFTSPEP-IQFSCVAVDPSGELVCAGAQDS-FEIFVWSVQTGQLLDILSG 476 (893)
T ss_pred cCCEEE-Eeec---CCeEEeeeecccceeeeecCCCc-eeeeEEEEcCCCCEEEeeccce-EEEEEEEeecCeeeehhcC
Confidence 776554 3333 36788999988766788776664 4556677776567777777765 4799999999998777877
Q ss_pred CCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEEC
Q 003878 449 EIGSVNAISARREDSVVFISFTSFLIPGIVYQCNL 483 (789)
Q Consensus 449 ~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl 483 (789)
+.+.|++++++++++.++ ..|+.. ++.+||.
T Consensus 477 HEgPVs~l~f~~~~~~La--S~SWDk--TVRiW~i 507 (893)
T KOG0291|consen 477 HEGPVSGLSFSPDGSLLA--SGSWDK--TVRIWDI 507 (893)
T ss_pred CCCcceeeEEccccCeEE--eccccc--eEEEEEe
Confidence 789999999999998443 346654 5666665
No 157
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.60 E-value=6.9e-07 Score=87.09 Aligned_cols=244 Identities=16% Similarity=0.084 Sum_probs=134.4
Q ss_pred EEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcc
Q 003878 511 VFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGG 590 (789)
Q Consensus 511 ~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~ 590 (789)
+.++.+|| ..+++..+ |.+ ++.+-.|..-|+++. ...|...+..+++.+||.|+..||||.|+.-..-....
T Consensus 8 ~~l~~~DG-~~l~~~~~-pA~----~~~~g~~~va~a~Gv--~~~fYRrfA~~a~~~Gf~Vlt~dyRG~g~S~p~~~~~~ 79 (281)
T COG4757 8 AHLPAPDG-YSLPGQRF-PAD----GKASGRLVVAGATGV--GQYFYRRFAAAAAKAGFEVLTFDYRGIGQSRPASLSGS 79 (281)
T ss_pred cccccCCC-ccCccccc-cCC----CCCCCcEEecccCCc--chhHhHHHHHHhhccCceEEEEecccccCCCccccccC
Confidence 56788999 99998876 443 455555566666664 34455556778888999999999999887543322111
Q ss_pred cccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCC--ccccccc---c----cc
Q 003878 591 ALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG--VMDMLRY---H----KF 661 (789)
Q Consensus 591 ~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p--~~d~~~~---~----~~ 661 (789)
.-....-...|+.++++++.+.- -.-.+..+|||+||.+.+.+. ++|..-.++|..++ +.-.... . ..
T Consensus 80 ~~~~~DwA~~D~~aal~~~~~~~--~~~P~y~vgHS~GGqa~gL~~-~~~k~~a~~vfG~gagwsg~m~~~~~l~~~~l~ 156 (281)
T COG4757 80 QWRYLDWARLDFPAALAALKKAL--PGHPLYFVGHSFGGQALGLLG-QHPKYAAFAVFGSGAGWSGWMGLRERLGAVLLW 156 (281)
T ss_pred ccchhhhhhcchHHHHHHHHhhC--CCCceEEeeccccceeecccc-cCcccceeeEeccccccccchhhhhcccceeec
Confidence 12223345679999999998742 223699999999998876654 45643333343322 1111000 0 00
Q ss_pred ----cCCccch-----hhcCCC-CcHH-HHHHHHhcC--c-ccCCCCCCCC--CCCCCCCCCeEEEEecCCCCCCCcHHH
Q 003878 662 ----TIGHAWV-----SDFGCS-EEEE-EFYWLIKYS--P-LHNVRRPWEQ--NPDKPFQYPSTLLLTADHDDRVVPLHS 725 (789)
Q Consensus 662 ----~~~~~~~-----~e~g~p-~~~~-~~~~l~~~s--P-~~~v~~~~~~--~~~~~~~~pp~Li~~g~~D~~V~~~~~ 725 (789)
.....|. .-.|.+ +.|- .+...+.+. | |...+....+ +-++ ...+|+..+...+|+-+|+...
T Consensus 157 ~lv~p~lt~w~g~~p~~l~G~G~d~p~~v~RdW~RwcR~p~y~fddp~~~~~~q~ya-aVrtPi~~~~~~DD~w~P~As~ 235 (281)
T COG4757 157 NLVGPPLTFWKGYMPKDLLGLGSDLPGTVMRDWARWCRHPRYYFDDPAMRNYRQVYA-AVRTPITFSRALDDPWAPPASR 235 (281)
T ss_pred cccccchhhccccCcHhhcCCCccCcchHHHHHHHHhcCccccccChhHhHHHHHHH-HhcCceeeeccCCCCcCCHHHH
Confidence 0000110 011222 1111 111111111 1 1111100000 0000 1267999999999999999988
Q ss_pred HHHHHHHHHhhccCCCCCCCCCcEEEEEeCCC----CcCCCCchhhHHHHHHHHHHHH
Q 003878 726 LKLLATMQYVLCTSLENSPQTNPIIGRIERKA----GHGVGLPTQKMIDEAADRYGFM 779 (789)
Q Consensus 726 ~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~----gH~~~~~~~~~~~~~~~~~~fl 779 (789)
.+|....++ .|++++.++.. ||.....+.- .....+++.|+
T Consensus 236 d~f~~~y~n------------Apl~~~~~~~~~~~lGH~gyfR~~~-Ealwk~~L~w~ 280 (281)
T COG4757 236 DAFASFYRN------------APLEMRDLPRAEGPLGHMGYFREPF-EALWKEMLGWF 280 (281)
T ss_pred HHHHHhhhc------------CcccceecCcccCcccchhhhccch-HHHHHHHHHhh
Confidence 888887764 47777776665 8864332210 13344555554
No 158
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=98.59 E-value=9.5e-08 Score=111.21 Aligned_cols=221 Identities=16% Similarity=0.185 Sum_probs=120.2
Q ss_pred cCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCC---CCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhccc
Q 003878 515 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTP---SFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGA 591 (789)
Q Consensus 515 s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~---~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~ 591 (789)
+.|- +.+-|+.|+......+.||+|++|||....... .+.. ..++.+++++|+.+|||-|- +| |.....
T Consensus 105 sEDC---L~LnI~~P~~~~~~~~lPV~v~ihGG~f~~G~~~~~~~~~--~~~~~~~~vivVt~nYRlg~-~G--fl~~~~ 176 (535)
T PF00135_consen 105 SEDC---LYLNIYTPSNASSNSKLPVMVWIHGGGFMFGSGSFPPYDG--ASLAASKDVIVVTINYRLGA-FG--FLSLGD 176 (535)
T ss_dssp ES------EEEEEEETSSSSTTSEEEEEEE--STTTSSCTTSGGGHT--HHHHHHHTSEEEEE----HH-HH--H-BSSS
T ss_pred CchH---HHHhhhhccccccccccceEEEeecccccCCCcccccccc--cccccCCCEEEEEecccccc-cc--cccccc
Confidence 4555 666778898865555899999999985433332 2222 34555699999999999542 11 111111
Q ss_pred cc--CCcchHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHhC--CCceeEEEecCCccc-cccccccc-
Q 003878 592 LA--KKQNCFDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQR--PDLFGCALAHVGVMD-MLRYHKFT- 662 (789)
Q Consensus 592 ~~--~~~~~~~D~~~~~~~L~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~--pd~f~a~v~~~p~~d-~~~~~~~~- 662 (789)
.. .+...+.|.+.|++|+.++ ---||++|.|+|+|+||..+...+... ..+|+.+|+++|..- ........
T Consensus 177 ~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs~~~~~~~~~~~~ 256 (535)
T PF00135_consen 177 LDAPSGNYGLLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGSALSPWATSENPE 256 (535)
T ss_dssp TTSHBSTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--TTSTTSSBSHHH
T ss_pred cccCchhhhhhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccccccccccccccccccccccccc
Confidence 11 2445689999999999876 224999999999999999998877762 249999999998322 21111111
Q ss_pred -CCccchhhcCCCCc--HHHHHHHHhcCcccCCCCC---CCCCCCCCCC-CCeEEEEecCCCCCCCcHHHHHHHHHHHHh
Q 003878 663 -IGHAWVSDFGCSEE--EEEFYWLIKYSPLHNVRRP---WEQNPDKPFQ-YPSTLLLTADHDDRVVPLHSLKLLATMQYV 735 (789)
Q Consensus 663 -~~~~~~~e~g~p~~--~~~~~~l~~~sP~~~v~~~---~~~~~~~~~~-~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~ 735 (789)
.........|++.. .+..+.|++.++-.-++.. +.. ..... ..|++ |..+-+..+..+.+.=+
T Consensus 257 ~~~~~la~~lgc~~~~~~~~l~cLR~~~~~~L~~a~~~~~~~--~~~~~~f~Pvv------Dg~~lp~~p~~~~~~g~-- 326 (535)
T PF00135_consen 257 QQAQKLAKALGCDDSDSSDILECLRSLPAEELLAAQNKLWPE--SGFFPPFGPVV------DGDFLPDSPSELLKSGR-- 326 (535)
T ss_dssp HHHHHHHHHTTSTTSSHHHHHHHHHHS-HHHHHHHHHCCSTT--SSSSSSSSBBE------BSSSSSS-HHHHHHTTT--
T ss_pred hhhhhhhhhhccccccccchhhhhhhhhccchhhhhhccccc--ccccccCCcee------cccccccCccccccccc--
Confidence 11122334577622 3456666665442211100 000 00000 23542 33344555555443311
Q ss_pred hccCCCCCCCCCcEEEEEeCCCCcCC
Q 003878 736 LCTSLENSPQTNPIIGRIERKAGHGV 761 (789)
Q Consensus 736 ~~~~~~~~~~~~~~~l~~~~~~gH~~ 761 (789)
...+|+.+-...++|..+
T Consensus 327 --------~~~vP~liG~t~~Eg~~~ 344 (535)
T PF00135_consen 327 --------FNKVPLLIGSTSDEGSLF 344 (535)
T ss_dssp --------STTSEEEEEEETBTTHHH
T ss_pred --------cceeeeecccccccchhh
Confidence 227899888888888864
No 159
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.58 E-value=5.8e-05 Score=84.66 Aligned_cols=241 Identities=12% Similarity=0.148 Sum_probs=152.3
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccce
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIF 212 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 212 (789)
.+..++++-.|.+||++.+. -.+|-||+..+...+-.+- + |+.
T Consensus 309 ~I~t~~~N~tGDWiA~g~~k----lgQLlVweWqsEsYVlKQQ-g------H~~-------------------------- 351 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSK----LGQLLVWEWQSESYVLKQQ-G------HSD-------------------------- 351 (893)
T ss_pred eeeEEEecccCCEEEEcCCc----cceEEEEEeeccceeeecc-c------ccc--------------------------
Confidence 45677788899999997654 4488888887765442221 1 110
Q ss_pred eeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEE
Q 003878 213 FFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILC 292 (789)
Q Consensus 213 ~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~ 292 (789)
+...++.||||+.|+-... ..+|.+|+...+-. ...
T Consensus 352 -----------------------~i~~l~YSpDgq~iaTG~e-------------------DgKVKvWn~~SgfC--~vT 387 (893)
T KOG0291|consen 352 -----------------------RITSLAYSPDGQLIATGAE-------------------DGKVKVWNTQSGFC--FVT 387 (893)
T ss_pred -----------------------ceeeEEECCCCcEEEeccC-------------------CCcEEEEeccCceE--EEE
Confidence 2578999999998875432 23578887654322 234
Q ss_pred EecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEE--EecCC
Q 003878 293 WKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEV--IANDD 370 (789)
Q Consensus 293 ~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~s~dG 370 (789)
|.++ ...+.++.|+.+|+.|+-.+-++ .|..+|+... ..++..+......... ..|.|
T Consensus 388 FteH--ts~Vt~v~f~~~g~~llssSLDG-----tVRAwDlkRY-------------rNfRTft~P~p~QfscvavD~sG 447 (893)
T KOG0291|consen 388 FTEH--TSGVTAVQFTARGNVLLSSSLDG-----TVRAWDLKRY-------------RNFRTFTSPEPIQFSCVAVDPSG 447 (893)
T ss_pred eccC--CCceEEEEEEecCCEEEEeecCC-----eEEeeeeccc-------------ceeeeecCCCceeeeEEEEcCCC
Confidence 4443 44467899999999887666443 3777787653 1233333222222222 34446
Q ss_pred CEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCC-ceeeecccC
Q 003878 371 TVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNG-SLLHQLPIE 449 (789)
Q Consensus 371 ~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG-~~~~~l~~~ 449 (789)
. +++.... ..+.|++|++++|+ ...++... +..+.++++++.+.++++.+.|- .|++||.=+. ...+++...
T Consensus 448 e-lV~AG~~--d~F~IfvWS~qTGq-llDiLsGH-EgPVs~l~f~~~~~~LaS~SWDk--TVRiW~if~s~~~vEtl~i~ 520 (893)
T KOG0291|consen 448 E-LVCAGAQ--DSFEIFVWSVQTGQ-LLDILSGH-EGPVSGLSFSPDGSLLASGSWDK--TVRIWDIFSSSGTVETLEIR 520 (893)
T ss_pred C-EEEeecc--ceEEEEEEEeecCe-eeehhcCC-CCcceeeEEccccCeEEeccccc--eEEEEEeeccCceeeeEeec
Confidence 5 4444433 46999999999997 45555544 36678877777677888888886 6777876321 233555543
Q ss_pred CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 450 IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 450 ~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
..+..++++|||+++.++.. -+.|-.||...+
T Consensus 521 -sdvl~vsfrPdG~elaVaTl----dgqItf~d~~~~ 552 (893)
T KOG0291|consen 521 -SDVLAVSFRPDGKELAVATL----DGQITFFDIKEA 552 (893)
T ss_pred -cceeEEEEcCCCCeEEEEEe----cceEEEEEhhhc
Confidence 33557899999999997643 346667776544
No 160
>PTZ00420 coronin; Provisional
Probab=98.58 E-value=1.7e-05 Score=90.81 Aligned_cols=161 Identities=12% Similarity=-0.029 Sum_probs=90.3
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
...++|+|++..++.+.. ....|.+|++.++.. ...+.. ...+.++.|+|||+.|+.
T Consensus 128 V~sVaf~P~g~~iLaSgS------------------~DgtIrIWDl~tg~~--~~~i~~---~~~V~SlswspdG~lLat 184 (568)
T PTZ00420 128 ISIIDWNPMNYYIMCSSG------------------FDSFVNIWDIENEKR--AFQINM---PKKLSSLKWNIKGNLLSG 184 (568)
T ss_pred EEEEEECCCCCeEEEEEe------------------CCCeEEEEECCCCcE--EEEEec---CCcEEEEEECCCCCEEEE
Confidence 578999999988876532 234688999976542 222222 233668999999998876
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccc--eeEE----EecCCCEEEEEECCCCCCceEEEEE
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA--QYEV----IANDDTVFTFLTNKDAPKYKIIRVD 390 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~----~s~dG~~l~~~tn~~~~~~~L~~~d 390 (789)
... ...|.++|+.++. ....+...... .... ++++++.|+.....+.....|.++|
T Consensus 185 ~s~-----D~~IrIwD~Rsg~-------------~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWD 246 (568)
T PTZ00420 185 TCV-----GKHMHIIDPRKQE-------------IASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWD 246 (568)
T ss_pred Eec-----CCEEEEEECCCCc-------------EEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEE
Confidence 543 2458899998742 11122111111 1111 3477777665444332234699999
Q ss_pred CCCCCCeEEeccCCC-CceeeeEEEec-CCEEEEEEEeCCeEEEEEEECCCCc
Q 003878 391 LKEPNDWFEVIPEAE-RDVLESATAVN-LNQMIVSYLSDVKYVLQIRDLKNGS 441 (789)
Q Consensus 391 l~~~~~~~~l~~~~~-~~~i~~v~~~~-~~~lv~~~~~~g~~~L~~~dl~tG~ 441 (789)
+.........+.... ...+. ..+.+ ++.+++++..|+ .|++|++..+.
T Consensus 247 lr~~~~pl~~~~ld~~~~~L~-p~~D~~tg~l~lsGkGD~--tIr~~e~~~~~ 296 (568)
T PTZ00420 247 LKNTTSALVTMSIDNASAPLI-PHYDESTGLIYLIGKGDG--NCRYYQHSLGS 296 (568)
T ss_pred CCCCCCceEEEEecCCccceE-EeeeCCCCCEEEEEECCC--eEEEEEccCCc
Confidence 885331222222111 11111 12223 356777777776 68888886554
No 161
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.57 E-value=1.1e-05 Score=86.57 Aligned_cols=286 Identities=14% Similarity=0.030 Sum_probs=169.1
Q ss_pred CCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceec---ccccccccccccCccceeeeeeccccccccccc
Q 003878 129 DGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA---DALSWVCFCFSHSFGYFFHLTISLLNVPTYKLF 205 (789)
Q Consensus 129 ~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 205 (789)
.|+-.|..+.+-|.|-+++ +|+-.|++++||...-...- ..|..+ =.|..+|....|.+..+
T Consensus 165 hgtk~Vsal~~Dp~GaR~~-----sGs~Dy~v~~wDf~gMdas~~~fr~l~P~----------E~h~i~sl~ys~Tg~~i 229 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFV-----SGSLDYTVKFWDFQGMDASMRSFRQLQPC----------ETHQINSLQYSVTGDQI 229 (641)
T ss_pred CCceEEEEeeecCCCceee-----eccccceEEEEecccccccchhhhccCcc----------cccccceeeecCCCCeE
Confidence 3566788999999999998 78889999999998652211 112221 12566777777888755
Q ss_pred cccccceeeEEEeeeccccceee-------eeeec-ccc-----cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCC
Q 003878 206 LYLRGIFFFFYLFSLVKSTIYSF-------WSVVS-QFK-----FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSN 272 (789)
Q Consensus 206 ~~~~~~~~~~~~~~s~~~g~~~l-------~~~~~-~~~-----~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~ 272 (789)
+-+.|- ..+-+-|++|..-+ |-.++ .++ ...-.|.|+.+..|.+...
T Consensus 230 Lvvsg~---aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~----------------- 289 (641)
T KOG0772|consen 230 LVVSGS---AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSY----------------- 289 (641)
T ss_pred EEEecC---cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecC-----------------
Confidence 555443 23444577765533 22222 222 1456899999999888543
Q ss_pred cccEEEEEECCCCCCCcEEEEecCCCCee--EEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCC
Q 003878 273 LYHEFYYHFLGTKQSEDILCWKDPEHPKY--IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLL 350 (789)
Q Consensus 273 ~~~~i~~~~lg~~~~~~~~~~~~~~~~~~--~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~ 350 (789)
...+++|++....++..++-..+..... ....+|++||++|+..+.+++ |-+|+..+.. .+ +..
T Consensus 290 -DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGS-----IQ~W~~~~~~-----v~---p~~ 355 (641)
T KOG0772|consen 290 -DGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGS-----IQIWDKGSRT-----VR---PVM 355 (641)
T ss_pred -CCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCc-----eeeeecCCcc-----cc---cce
Confidence 2346777765443333333333322221 346789999999887775543 4455543210 00 000
Q ss_pred ccE-eeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEecc--CCC-CceeeeEEEecCCEEEEEEEe
Q 003878 351 PFV-KLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIP--EAE-RDVLESATAVNLNQMIVSYLS 426 (789)
Q Consensus 351 ~~~-~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~--~~~-~~~i~~v~~~~~~~lv~~~~~ 426 (789)
... ....+.+..-..||.||++|+-. +.+..|-+|||...+ +.|.. .-+ ........+++++.|++....
T Consensus 356 ~vk~AH~~g~~Itsi~FS~dg~~LlSR----g~D~tLKvWDLrq~k--kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 356 KVKDAHLPGQDITSISFSYDGNYLLSR----GFDDTLKVWDLRQFK--KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred EeeeccCCCCceeEEEeccccchhhhc----cCCCceeeeeccccc--cchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence 011 11122222334589999987732 345679999998765 22211 110 012245667887888887654
Q ss_pred C----CeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEE
Q 003878 427 D----VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISF 469 (789)
Q Consensus 427 ~----g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ 469 (789)
- +...|+++|..+=+.+..|..+..+|....|.|.-++|++..
T Consensus 430 ~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gs 476 (641)
T KOG0772|consen 430 APNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGS 476 (641)
T ss_pred ccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeec
Confidence 3 234799999876666677777766666677888877777654
No 162
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=98.57 E-value=2e-06 Score=83.53 Aligned_cols=187 Identities=16% Similarity=0.137 Sum_probs=116.9
Q ss_pred cEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEee--c----CCCCCChhHHhcccccC-Ccch---HHHHHHHHHH
Q 003878 539 PCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANI--R----GGGEYGEEWHKGGALAK-KQNC---FDDFISASEY 608 (789)
Q Consensus 539 P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~--R----G~g~~g~~~~~~~~~~~-~~~~---~~D~~~~~~~ 608 (789)
-+||++||-..+... +.....+ +..+..-.++|+- | -+|..+..|.+...... .... +.-..+.+..
T Consensus 4 atIi~LHglGDsg~~--~~~~~~~-l~l~NiKwIcP~aP~rpvt~~~G~~~~aWfd~~~~~~~~~~d~~~~~~aa~~i~~ 80 (206)
T KOG2112|consen 4 ATIIFLHGLGDSGSG--WAQFLKQ-LPLPNIKWICPTAPSRPVTLNGGAFMNAWFDIMELSSDAPEDEEGLHRAADNIAN 80 (206)
T ss_pred EEEEEEecCCCCCcc--HHHHHHc-CCCCCeeEEcCCCCCCcccccCCCcccceecceeeCcccchhhhHHHHHHHHHHH
Confidence 479999996443222 2221112 3334455555531 1 24555666777543221 1112 2222333444
Q ss_pred HHHc---CCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHHh
Q 003878 609 LISA---GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIK 685 (789)
Q Consensus 609 L~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~ 685 (789)
|+++ ..++++||+|.|.|+||.+++.++..+|.-..+++...++..-.. . +.|
T Consensus 81 Li~~e~~~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~-----------~--~~~----------- 136 (206)
T KOG2112|consen 81 LIDNEPANGIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLPRAS-----------I--GLP----------- 136 (206)
T ss_pred HHHHHHHcCCCccceeEcccCchHHHHHHHHhccccccceeeccccccccch-----------h--hcc-----------
Confidence 4433 236889999999999999999999988765555555555432100 0 000
Q ss_pred cCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCch
Q 003878 686 YSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPT 765 (789)
Q Consensus 686 ~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~ 765 (789)
..... ..++|++..||+.|+.||..-..+..+.|+.. +..++++.|++.+|....
T Consensus 137 -----~~~~~--------~~~~~i~~~Hg~~d~~vp~~~g~~s~~~l~~~----------~~~~~f~~y~g~~h~~~~-- 191 (206)
T KOG2112|consen 137 -----GWLPG--------VNYTPILLCHGTADPLVPFRFGEKSAQFLKSL----------GVRVTFKPYPGLGHSTSP-- 191 (206)
T ss_pred -----CCccc--------cCcchhheecccCCceeehHHHHHHHHHHHHc----------CCceeeeecCCccccccH--
Confidence 00000 02589999999999999999999999999987 778999999999998643
Q ss_pred hhHHHHHHHHHHHHHH
Q 003878 766 QKMIDEAADRYGFMAK 781 (789)
Q Consensus 766 ~~~~~~~~~~~~fl~~ 781 (789)
+++.++..|+..
T Consensus 192 ----~e~~~~~~~~~~ 203 (206)
T KOG2112|consen 192 ----QELDDLKSWIKT 203 (206)
T ss_pred ----HHHHHHHHHHHH
Confidence 456677778765
No 163
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.56 E-value=8.6e-05 Score=83.52 Aligned_cols=263 Identities=18% Similarity=0.167 Sum_probs=156.4
Q ss_pred eEeCCEEEEEEEcCCCCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCce------EEEE
Q 003878 87 FKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSD------WATI 160 (789)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~------~~~i 160 (789)
.++|+++.|.-..+|.+...|++++..++ +.+-|. +. .....++.|++||+.+.|+....... ..+|
T Consensus 132 Spdg~~la~~~s~~G~e~~~l~v~Dl~tg--~~l~d~--i~---~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 132 SPDGKRLAYSLSDGGSEWYTLRVFDLETG--KFLPDG--IE---NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp TTTSSEEEEEEEETTSSEEEEEEEETTTT--EEEEEE--EE---EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred CCCCCEEEEEecCCCCceEEEEEEECCCC--cCcCCc--cc---ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 45899999999999999999999987655 333332 10 01122389999999999998655544 7899
Q ss_pred EEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceE
Q 003878 161 KLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSI 240 (789)
Q Consensus 161 ~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~ 240 (789)
+.+.+.|+......+-.. ++.. +...++
T Consensus 205 ~~~~~gt~~~~d~lvfe~---------------------~~~~-------------------------------~~~~~~ 232 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEE---------------------PDEP-------------------------------FWFVSV 232 (414)
T ss_dssp EEEETTS-GGG-EEEEC----------------------TTCT-------------------------------TSEEEE
T ss_pred EEEECCCChHhCeeEEee---------------------cCCC-------------------------------cEEEEE
Confidence 999998874332111110 1110 002467
Q ss_pred EEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCC---CCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 241 AWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTK---QSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 241 ~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~---~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
.+|+|++.|++..... .. ...+|+.++... ..+-.++........+. + ...|..+++.
T Consensus 233 ~~s~d~~~l~i~~~~~--------------~~-~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~--v--~~~~~~~yi~ 293 (414)
T PF02897_consen 233 SRSKDGRYLFISSSSG--------------TS-ESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY--V--DHHGDRLYIL 293 (414)
T ss_dssp EE-TTSSEEEEEEESS--------------SS-EEEEEEEECCCTTTSS-SEEEEEESSSS-EEE--E--EEETTEEEEE
T ss_pred EecCcccEEEEEEEcc--------------cc-CCeEEEEeccccCCCcCCcEEEeCCCCceEEE--E--EccCCEEEEe
Confidence 8899999999876542 12 367999999874 33344555443322222 2 2227777777
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccE-eeecccc-ceeEEEecCCCEEEEEECCCCCCceEEEEECC-CC
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFV-KLIDGFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLK-EP 394 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~-~l~~~~~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~-~~ 394 (789)
++.. .....|+.+++++.. ...+. .+....+ .....++..+++|++..+++ ...+|.++++. +.
T Consensus 294 Tn~~-a~~~~l~~~~l~~~~-----------~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~-~~~~l~v~~~~~~~ 360 (414)
T PF02897_consen 294 TNDD-APNGRLVAVDLADPS-----------PAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYREN-GSSRLRVYDLDDGK 360 (414)
T ss_dssp E-TT--TT-EEEEEETTSTS-----------GGGEEEEEE--SSSEEEEEEEEETTEEEEEEEET-TEEEEEEEETT-TE
T ss_pred eCCC-CCCcEEEEecccccc-----------cccceeEEcCCCCceeEEEEEEECCEEEEEEEEC-CccEEEEEECCCCc
Confidence 7643 346789999998732 11123 3333222 12334566788998888775 46899999998 43
Q ss_pred CCeEEeccCCCCceeeeEEEec-CCEEEEEEEeCC-eEEEEEEECCCCce
Q 003878 395 NDWFEVIPEAERDVLESATAVN-LNQMIVSYLSDV-KYVLQIRDLKNGSL 442 (789)
Q Consensus 395 ~~~~~l~~~~~~~~i~~v~~~~-~~~lv~~~~~~g-~~~L~~~dl~tG~~ 442 (789)
. ...+ +......+.++.... .+.+.+.++.-. ++.++.+|+++|+.
T Consensus 361 ~-~~~~-~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 361 E-SREI-PLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp E-EEEE-ESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred E-Eeee-cCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 3 2222 222234455554333 256776666554 55999999998875
No 164
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=98.55 E-value=3.5e-06 Score=81.83 Aligned_cols=158 Identities=13% Similarity=-0.046 Sum_probs=92.8
Q ss_pred EEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcE
Q 003878 541 LLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKL 620 (789)
Q Consensus 541 ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i 620 (789)
|+.+||- +.+....|.+-+..-+.+. +.|-.++. .. -|+.+.++.|.+.=-...+.+
T Consensus 1 v~IvhG~-~~s~~~HW~~wl~~~l~~~-~~V~~~~~------------------~~---P~~~~W~~~l~~~i~~~~~~~ 57 (171)
T PF06821_consen 1 VLIVHGY-GGSPPDHWQPWLERQLENS-VRVEQPDW------------------DN---PDLDEWVQALDQAIDAIDEPT 57 (171)
T ss_dssp EEEE--T-TSSTTTSTHHHHHHHHTTS-EEEEEC--------------------TS-----HHHHHHHHHHCCHC-TTTE
T ss_pred CEEeCCC-CCCCccHHHHHHHHhCCCC-eEEecccc------------------CC---CCHHHHHHHHHHHHhhcCCCe
Confidence 4566773 3444466776666666644 66666553 11 134445555554411123469
Q ss_pred EEEeeChHHHHHHHHH-HhCCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCC
Q 003878 621 CIEGGSNGGLLVGACI-NQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQN 699 (789)
Q Consensus 621 ~i~G~S~GG~l~~~~~-~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~ 699 (789)
+++|||.|...++..+ .+....++++++.+|+-....... ..+. ..+.+......
T Consensus 58 ilVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~~~~~~~-------~~~~------------~~f~~~p~~~l----- 113 (171)
T PF06821_consen 58 ILVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDPDDPEPF-------PPEL------------DGFTPLPRDPL----- 113 (171)
T ss_dssp EEEEETHHHHHHHHHHHHTCCSSEEEEEEES--SCGCHHCC-------TCGG------------CCCTTSHCCHH-----
T ss_pred EEEEeCHHHHHHHHHHhhcccccccEEEEEcCCCcccccch-------hhhc------------cccccCccccc-----
Confidence 9999999999999998 777889999999999743200000 0000 11111111111
Q ss_pred CCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchh
Q 003878 700 PDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQ 766 (789)
Q Consensus 700 ~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~ 766 (789)
.-|.+++.++||+.||+..+.+++++|.. ++...+++||.......
T Consensus 114 ------~~~~~viaS~nDp~vp~~~a~~~A~~l~a---------------~~~~~~~~GHf~~~~G~ 159 (171)
T PF06821_consen 114 ------PFPSIVIASDNDPYVPFERAQRLAQRLGA---------------ELIILGGGGHFNAASGF 159 (171)
T ss_dssp ------HCCEEEEEETTBSSS-HHHHHHHHHHHT----------------EEEEETS-TTSSGGGTH
T ss_pred ------CCCeEEEEcCCCCccCHHHHHHHHHHcCC---------------CeEECCCCCCcccccCC
Confidence 12448999999999999999999999864 58888999998765433
No 165
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.54 E-value=2.2e-06 Score=97.40 Aligned_cols=110 Identities=15% Similarity=0.073 Sum_probs=69.2
Q ss_pred ccEEEEEcCCCCccCCCCCC--HHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCC
Q 003878 538 HPCLLYGYGGFNISVTPSFS--VSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 615 (789)
Q Consensus 538 ~P~ll~~hGg~~~~~~~~~~--~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~ 615 (789)
.+-||++||......-.... ..+..+|.++||.|+++|.||.|.....+ .......+++.++++++.+. +
T Consensus 188 ~~PlLiVp~~i~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrgpg~s~~~~------~~ddY~~~~i~~al~~v~~~--~ 259 (532)
T TIGR01838 188 KTPLLIVPPWINKYYILDLRPQNSLVRWLVEQGHTVFVISWRNPDASQADK------TFDDYIRDGVIAALEVVEAI--T 259 (532)
T ss_pred CCcEEEECcccccceeeecccchHHHHHHHHCCcEEEEEECCCCCcccccC------ChhhhHHHHHHHHHHHHHHh--c
Confidence 34466777753322211111 12445555599999999999876432211 11122335677888888764 4
Q ss_pred CCCcEEEEeeChHHHHHHH----HHHhC-CCceeEEEecCCcccc
Q 003878 616 QSRKLCIEGGSNGGLLVGA----CINQR-PDLFGCALAHVGVMDM 655 (789)
Q Consensus 616 d~~~i~i~G~S~GG~l~~~----~~~~~-pd~f~a~v~~~p~~d~ 655 (789)
..+++.++|+|+||.+++. ++..+ |+++++++.....+|+
T Consensus 260 g~~kv~lvG~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~Df 304 (532)
T TIGR01838 260 GEKQVNCVGYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLLDF 304 (532)
T ss_pred CCCCeEEEEECcCcHHHHHHHHHHHHhCCCCccceEEEEecCcCC
Confidence 5679999999999998532 34444 7788888877665664
No 166
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.53 E-value=3.8e-05 Score=75.58 Aligned_cols=198 Identities=15% Similarity=0.094 Sum_probs=126.9
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
+..+..+||++.|+.. ....|+++++.+.....+..|+.+.+ .+.++.|--||+|++-
T Consensus 43 VNrLeiTpdk~~LAaa--------------------~~qhvRlyD~~S~np~Pv~t~e~h~k--NVtaVgF~~dgrWMyT 100 (311)
T KOG0315|consen 43 VNRLEITPDKKDLAAA--------------------GNQHVRLYDLNSNNPNPVATFEGHTK--NVTAVGFQCDGRWMYT 100 (311)
T ss_pred eeeEEEcCCcchhhhc--------------------cCCeeEEEEccCCCCCceeEEeccCC--ceEEEEEeecCeEEEe
Confidence 5678889999988744 33458999999887767778887643 3567889999999976
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecc-ccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG-FDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
.+.+ ..+.++|+.... ..+.... .........|+...|+. .+ .++.|.++|+....
T Consensus 101 gseD-----gt~kIWdlR~~~--------------~qR~~~~~spVn~vvlhpnQteLis-~d---qsg~irvWDl~~~~ 157 (311)
T KOG0315|consen 101 GSED-----GTVKIWDLRSLS--------------CQRNYQHNSPVNTVVLHPNQTELIS-GD---QSGNIRVWDLGENS 157 (311)
T ss_pred cCCC-----ceEEEEeccCcc--------------cchhccCCCCcceEEecCCcceEEe-ec---CCCcEEEEEccCCc
Confidence 5543 336677876521 1111111 00111234566556653 22 24679999997764
Q ss_pred CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeee------cccCCeeEEEeecccCCcEEEEEE
Q 003878 396 DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQ------LPIEIGSVNAISARREDSVVFISF 469 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~------l~~~~~~v~~~s~s~d~~~l~~~~ 469 (789)
--.+++|+. +..++++++.+++..++.....| ..|+|++-++....+ +....+.+..--.|||++.++-.
T Consensus 158 c~~~liPe~-~~~i~sl~v~~dgsml~a~nnkG--~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~- 233 (311)
T KOG0315|consen 158 CTHELIPED-DTSIQSLTVMPDGSMLAAANNKG--NCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATC- 233 (311)
T ss_pred cccccCCCC-CcceeeEEEcCCCcEEEEecCCc--cEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEee-
Confidence 346778877 47899999988777777676665 789999864432222 22235555555678999876632
Q ss_pred cCCCCCcEEEEEECCCC
Q 003878 470 TSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 470 ss~~~P~~ly~~dl~tg 486 (789)
++ -.+++.++.++-
T Consensus 234 ss---dktv~iwn~~~~ 247 (311)
T KOG0315|consen 234 SS---DKTVKIWNTDDF 247 (311)
T ss_pred cC---CceEEEEecCCc
Confidence 22 347778877655
No 167
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=98.51 E-value=7.8e-06 Score=92.09 Aligned_cols=196 Identities=15% Similarity=0.203 Sum_probs=132.8
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
+.+..|+||.+.|+-+. ....+++|.+.+.. -..+|.+...|.+ .+.|+|-|-|.+-
T Consensus 454 Vyg~sFsPd~rfLlScS-------------------ED~svRLWsl~t~s--~~V~y~GH~~PVw--dV~F~P~GyYFat 510 (707)
T KOG0263|consen 454 VYGCSFSPDRRFLLSCS-------------------EDSSVRLWSLDTWS--CLVIYKGHLAPVW--DVQFAPRGYYFAT 510 (707)
T ss_pred eeeeeecccccceeecc-------------------CCcceeeeecccce--eEEEecCCCccee--eEEecCCceEEEe
Confidence 46788999998887543 23458888888753 3567887766765 5779999988775
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc-cceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF-DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
.+.+. ...+|..|-.. |++-..... +.....|.|+..+++ |. ..+..+-.||+.+|.
T Consensus 511 as~D~---tArLWs~d~~~---------------PlRifaghlsDV~cv~FHPNs~Y~a--TG--SsD~tVRlWDv~~G~ 568 (707)
T KOG0263|consen 511 ASHDQ---TARLWSTDHNK---------------PLRIFAGHLSDVDCVSFHPNSNYVA--TG--SSDRTVRLWDVSTGN 568 (707)
T ss_pred cCCCc---eeeeeecccCC---------------chhhhcccccccceEEECCcccccc--cC--CCCceEEEEEcCCCc
Confidence 54332 45677666432 122122211 222234788776544 32 345678889998887
Q ss_pred CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCC
Q 003878 396 DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIP 475 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P 475 (789)
...++.. ....+..+.++++++.+++..+++ .|.+||+.+|+.+.++..+.+.+.+++++.||..++.. + .-
T Consensus 569 -~VRiF~G-H~~~V~al~~Sp~Gr~LaSg~ed~--~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasg--g--~D 640 (707)
T KOG0263|consen 569 -SVRIFTG-HKGPVTALAFSPCGRYLASGDEDG--LIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASG--G--AD 640 (707)
T ss_pred -EEEEecC-CCCceEEEEEcCCCceEeecccCC--cEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEec--C--CC
Confidence 3445543 347789999999888888888887 78999999888766665567888899999999976632 2 34
Q ss_pred cEEEEEECCC
Q 003878 476 GIVYQCNLKT 485 (789)
Q Consensus 476 ~~ly~~dl~t 485 (789)
.++.+||+..
T Consensus 641 nsV~lWD~~~ 650 (707)
T KOG0263|consen 641 NSVRLWDLTK 650 (707)
T ss_pred CeEEEEEchh
Confidence 5777778754
No 168
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=98.49 E-value=2.4e-06 Score=89.56 Aligned_cols=191 Identities=18% Similarity=0.050 Sum_probs=117.2
Q ss_pred cEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccc
Q 003878 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRG 210 (789)
Q Consensus 131 ~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 210 (789)
...|+.++|.|+|++|+ .++-..+.++||+.|+..+-. .++ ||.|
T Consensus 261 ~~RVs~VafHPsG~~L~-----TasfD~tWRlWD~~tk~ElL~-QEG------Hs~~----------------------- 305 (459)
T KOG0272|consen 261 LARVSRVAFHPSGKFLG-----TASFDSTWRLWDLETKSELLL-QEG------HSKG----------------------- 305 (459)
T ss_pred hhhheeeeecCCCceee-----ecccccchhhcccccchhhHh-hcc------cccc-----------------------
Confidence 35688899999999998 455567999999999976532 122 2222
Q ss_pred ceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcE
Q 003878 211 IFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDI 290 (789)
Q Consensus 211 ~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~ 290 (789)
..+++|.|||.-++-.. ...--++|++.++. .+
T Consensus 306 --------------------------v~~iaf~~DGSL~~tGG-------------------lD~~~RvWDlRtgr--~i 338 (459)
T KOG0272|consen 306 --------------------------VFSIAFQPDGSLAATGG-------------------LDSLGRVWDLRTGR--CI 338 (459)
T ss_pred --------------------------cceeEecCCCceeeccC-------------------ccchhheeecccCc--EE
Confidence 58899999997665322 22234577888763 35
Q ss_pred EEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccc-eeEEEecC
Q 003878 291 LCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA-QYEVIAND 369 (789)
Q Consensus 291 ~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~s~d 369 (789)
+++++ +...+.++.|||+|-.|+-.+.+ +.+.++|+.... .+..+....+. .-..++|+
T Consensus 339 m~L~g--H~k~I~~V~fsPNGy~lATgs~D-----nt~kVWDLR~r~-------------~ly~ipAH~nlVS~Vk~~p~ 398 (459)
T KOG0272|consen 339 MFLAG--HIKEILSVAFSPNGYHLATGSSD-----NTCKVWDLRMRS-------------ELYTIPAHSNLVSQVKYSPQ 398 (459)
T ss_pred EEecc--cccceeeEeECCCceEEeecCCC-----CcEEEeeecccc-------------cceecccccchhhheEeccc
Confidence 66665 44557799999999988765432 446667776521 01111111111 11236776
Q ss_pred CCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCC
Q 003878 370 DTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDV 428 (789)
Q Consensus 370 G~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g 428 (789)
+..+++....+ ..+-.+.-.+....+.|..|. ..+-++.+++++..+++...|.
T Consensus 399 ~g~fL~TasyD---~t~kiWs~~~~~~~ksLaGHe--~kV~s~Dis~d~~~i~t~s~DR 452 (459)
T KOG0272|consen 399 EGYFLVTASYD---NTVKIWSTRTWSPLKSLAGHE--GKVISLDISPDSQAIATSSFDR 452 (459)
T ss_pred CCeEEEEcccC---cceeeecCCCcccchhhcCCc--cceEEEEeccCCceEEEeccCc
Confidence 56555554433 334444444443345555554 4567888888777777776664
No 169
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.48 E-value=8.5e-05 Score=80.79 Aligned_cols=212 Identities=13% Similarity=0.066 Sum_probs=104.8
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCC--cEEEEecCCCCeeEEEEEEecCCcEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSE--DILCWKDPEHPKYIFSGHVTEDGQYLV 315 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~--~~~~~~~~~~~~~~~~~~~SpDG~~l~ 315 (789)
..++++|||+.||.+... ...|..+++.++... .+.......+ ...+.++|||++++
T Consensus 83 ~~i~~~~~g~~l~v~~~~------------------~~~v~v~~~~~~g~~~~~~~~~~~~~~---~~~~~~~p~g~~l~ 141 (330)
T PRK11028 83 THISTDHQGRFLFSASYN------------------ANCVSVSPLDKDGIPVAPIQIIEGLEG---CHSANIDPDNRTLW 141 (330)
T ss_pred eEEEECCCCCEEEEEEcC------------------CCeEEEEEECCCCCCCCceeeccCCCc---ccEeEeCCCCCEEE
Confidence 578999999999877432 234666666533211 1111111111 23567899999997
Q ss_pred EEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCC--
Q 003878 316 MCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKE-- 393 (789)
Q Consensus 316 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~-- 393 (789)
+.... ...|+++|+++.. .+... .........+.......++|||+++|+.... ...|..++++.
T Consensus 142 v~~~~----~~~v~v~d~~~~g-~l~~~-----~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~---~~~v~v~~~~~~~ 208 (330)
T PRK11028 142 VPCLK----EDRIRLFTLSDDG-HLVAQ-----EPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL---NSSVDVWQLKDPH 208 (330)
T ss_pred EeeCC----CCEEEEEEECCCC-ccccc-----CCCceecCCCCCCceEEECCCCCEEEEEecC---CCEEEEEEEeCCC
Confidence 65532 3568999987521 00000 0000111112223345689999988875432 35666666653
Q ss_pred CC--CeEEe--ccCCC--CceeeeEEEecCCEEEEEEEeCCeEEEEEEECCC-Cceee---ecccCCeeEEEeecccCCc
Q 003878 394 PN--DWFEV--IPEAE--RDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKN-GSLLH---QLPIEIGSVNAISARREDS 463 (789)
Q Consensus 394 ~~--~~~~l--~~~~~--~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~t-G~~~~---~l~~~~~~v~~~s~s~d~~ 463 (789)
++ ....+ +|... ......+.++++++.++...+ +...|.+|+++. +...+ .+... .....+.+++|++
T Consensus 209 ~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~-~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~ 286 (330)
T PRK11028 209 GEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR-TASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGK 286 (330)
T ss_pred CCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC-CCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCC
Confidence 32 11111 22210 111224667775544433332 224677777642 22111 11111 1123467889999
Q ss_pred EEEEEEcCCCCCcEEEEEECCCC
Q 003878 464 VVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 464 ~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
.++++.. ...--.+|.+|..++
T Consensus 287 ~l~va~~-~~~~v~v~~~~~~~g 308 (330)
T PRK11028 287 YLIAAGQ-KSHHISVYEIDGETG 308 (330)
T ss_pred EEEEEEc-cCCcEEEEEEcCCCC
Confidence 8887642 222234444454555
No 170
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=98.47 E-value=3.7e-06 Score=91.73 Aligned_cols=146 Identities=18% Similarity=0.210 Sum_probs=104.8
Q ss_pred CCCCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCC---HHHHHHHHcCCeEEEEEeecC
Q 003878 502 DRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFS---VSRTILMRHLGAVFCIANIRG 578 (789)
Q Consensus 502 ~~~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~---~~~~~~l~~~G~~v~~~~~RG 578 (789)
...++.+|...+++.|| .-+.+. -.|+.. +++|+|++.||-..++..+.-. ....-+|+.+||-|-.-|.||
T Consensus 42 ~~~gy~~E~h~V~T~Dg-YiL~lh-RIp~~~---~~rp~Vll~HGLl~sS~~Wv~n~p~~sLaf~LadaGYDVWLgN~RG 116 (403)
T KOG2624|consen 42 EKYGYPVEEHEVTTEDG-YILTLH-RIPRGK---KKRPVVLLQHGLLASSSSWVLNGPEQSLAFLLADAGYDVWLGNNRG 116 (403)
T ss_pred HHcCCceEEEEEEccCC-eEEEEe-eecCCC---CCCCcEEEeeccccccccceecCccccHHHHHHHcCCceeeecCcC
Confidence 34567889999999999 733333 334432 7899999999987766654332 223445666999999999999
Q ss_pred CCCCChhHHhcccc-c-------CCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC---ceeEEE
Q 003878 579 GGEYGEEWHKGGAL-A-------KKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPD---LFGCAL 647 (789)
Q Consensus 579 ~g~~g~~~~~~~~~-~-------~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd---~f~a~v 647 (789)
..|.++-..-... . +..-...|+-|.++++.+. +..+++..+|||.|+.....++.++|+ .++..+
T Consensus 117 -n~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA~IdyIL~~--T~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~~~~ 193 (403)
T KOG2624|consen 117 -NTYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPAMIDYILEK--TGQEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFI 193 (403)
T ss_pred -cccchhhcccCCcCCcceeecchhhhhhcCHHHHHHHHHHh--ccccceEEEEEEccchhheehhcccchhhhhhheee
Confidence 6666542222111 1 1122457999999999876 577899999999999999999999887 577888
Q ss_pred ecCCcccc
Q 003878 648 AHVGVMDM 655 (789)
Q Consensus 648 ~~~p~~d~ 655 (789)
+.+|++-+
T Consensus 194 aLAP~~~~ 201 (403)
T KOG2624|consen 194 ALAPAAFP 201 (403)
T ss_pred eecchhhh
Confidence 88887643
No 171
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=98.46 E-value=4.4e-05 Score=75.65 Aligned_cols=244 Identities=12% Similarity=0.064 Sum_probs=140.3
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
..+.++.|.-||.+|| .|+-..+..||+++....+.+ +. +..|+.
T Consensus 21 ~~v~Sv~wn~~g~~la-----sgs~dktv~v~n~e~~r~~~~---~~--~~gh~~------------------------- 65 (313)
T KOG1407|consen 21 QKVHSVAWNCDGTKLA-----SGSFDKTVSVWNLERDRFRKE---LV--YRGHTD------------------------- 65 (313)
T ss_pred hcceEEEEcccCceee-----ecccCCceEEEEecchhhhhh---hc--ccCCCc-------------------------
Confidence 4578899999999999 555566888999887743321 11 011211
Q ss_pred eeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEE
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL 291 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~ 291 (789)
....++|.|-..-++.+.. ....|.+|++.+......+
T Consensus 66 ------------------------svdql~w~~~~~d~~atas------------------~dk~ir~wd~r~~k~~~~i 103 (313)
T KOG1407|consen 66 ------------------------SVDQLCWDPKHPDLFATAS------------------GDKTIRIWDIRSGKCTARI 103 (313)
T ss_pred ------------------------chhhheeCCCCCcceEEec------------------CCceEEEEEeccCcEEEEe
Confidence 1467889887766666643 2345888888765432222
Q ss_pred EEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCC
Q 003878 292 CWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDT 371 (789)
Q Consensus 292 ~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~ 371 (789)
.... + .....|||||+++++... ..+|-.+|..+-. ........+...-..|. ...
T Consensus 104 ~~~~--e---ni~i~wsp~g~~~~~~~k-----dD~it~id~r~~~-------------~~~~~~~~~e~ne~~w~-~~n 159 (313)
T KOG1407|consen 104 ETKG--E---NINITWSPDGEYIAVGNK-----DDRITFIDARTYK-------------IVNEEQFKFEVNEISWN-NSN 159 (313)
T ss_pred eccC--c---ceEEEEcCCCCEEEEecC-----cccEEEEEecccc-------------eeehhcccceeeeeeec-CCC
Confidence 2221 1 135789999999988653 3457777876521 00000001111112355 445
Q ss_pred EEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCe
Q 003878 372 VFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIG 451 (789)
Q Consensus 372 ~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~ 451 (789)
.++|++|-. +..+|+.++ .-+....+-.|.. .---+.++++++-++.+..|. .+.+||++.--..+.++-..+
T Consensus 160 d~Fflt~Gl-G~v~ILsyp--sLkpv~si~AH~s--nCicI~f~p~GryfA~GsADA--lvSLWD~~ELiC~R~isRldw 232 (313)
T KOG1407|consen 160 DLFFLTNGL-GCVEILSYP--SLKPVQSIKAHPS--NCICIEFDPDGRYFATGSADA--LVSLWDVDELICERCISRLDW 232 (313)
T ss_pred CEEEEecCC-ceEEEEecc--ccccccccccCCc--ceEEEEECCCCceEeeccccc--eeeccChhHhhhheeeccccC
Confidence 677777743 345555554 2222344445542 223466777677777777776 567788863223344444456
Q ss_pred eEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 452 SVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 452 ~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
.|..++++.||+.|+ |...-..|=.-+++||.
T Consensus 233 pVRTlSFS~dg~~lA----SaSEDh~IDIA~vetGd 264 (313)
T KOG1407|consen 233 PVRTLSFSHDGRMLA----SASEDHFIDIAEVETGD 264 (313)
T ss_pred ceEEEEeccCcceee----ccCccceEEeEecccCC
Confidence 677889999998665 33344445555566774
No 172
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=3.2e-05 Score=85.53 Aligned_cols=250 Identities=14% Similarity=0.038 Sum_probs=149.1
Q ss_pred EEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCc
Q 003878 107 LYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSF 186 (789)
Q Consensus 107 ~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~ 186 (789)
+|+-+..+++...|.+.+ ...+.++.|+|+|++||.... ...+.|||.++.+.+.. +... |.
T Consensus 199 vylW~~~s~~v~~l~~~~------~~~vtSv~ws~~G~~LavG~~-----~g~v~iwD~~~~k~~~~-~~~~------h~ 260 (484)
T KOG0305|consen 199 VYLWSASSGSVTELCSFG------EELVTSVKWSPDGSHLAVGTS-----DGTVQIWDVKEQKKTRT-LRGS------HA 260 (484)
T ss_pred EEEEecCCCceEEeEecC------CCceEEEEECCCCCEEEEeec-----CCeEEEEehhhcccccc-ccCC------cC
Confidence 455544455555666654 234789999999999997654 45899999988765542 1110 11
Q ss_pred cceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCC
Q 003878 187 GYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAG 266 (789)
Q Consensus 187 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~ 266 (789)
+ +.+.++|. +..+. +
T Consensus 261 ~------------------------------------------------rvg~laW~--~~~ls-s-------------- 275 (484)
T KOG0305|consen 261 S------------------------------------------------RVGSLAWN--SSVLS-S-------------- 275 (484)
T ss_pred c------------------------------------------------eeEEEecc--CceEE-E--------------
Confidence 1 36889997 22332 2
Q ss_pred ccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCccccccc
Q 003878 267 TETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKR 346 (789)
Q Consensus 267 ~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~ 346 (789)
..+...|..+++...+..-. +.. .+...+.++.|++||++++-..+ .+.++++|..+.
T Consensus 276 ----Gsr~~~I~~~dvR~~~~~~~-~~~--~H~qeVCgLkws~d~~~lASGgn-----DN~~~Iwd~~~~---------- 333 (484)
T KOG0305|consen 276 ----GSRDGKILNHDVRISQHVVS-TLQ--GHRQEVCGLKWSPDGNQLASGGN-----DNVVFIWDGLSP---------- 333 (484)
T ss_pred ----ecCCCcEEEEEEecchhhhh-hhh--cccceeeeeEECCCCCeeccCCC-----ccceEeccCCCc----------
Confidence 22334566677665443211 122 23445788999999999974432 467888888441
Q ss_pred CCCCccEeeecccccee-EEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEE
Q 003878 347 DGLLPFVKLIDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYL 425 (789)
Q Consensus 347 ~~~~~~~~l~~~~~~~~-~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~ 425 (789)
.+...+.....+.. ..|+|..+-|+.. .-+..+..|..+|..++.....+-. ...|.++.|++...=+++.-
T Consensus 334 ---~p~~~~~~H~aAVKA~awcP~q~~lLAs-GGGs~D~~i~fwn~~~g~~i~~vdt---gsQVcsL~Wsk~~kEi~sth 406 (484)
T KOG0305|consen 334 ---EPKFTFTEHTAAVKALAWCPWQSGLLAT-GGGSADRCIKFWNTNTGARIDSVDT---GSQVCSLIWSKKYKELLSTH 406 (484)
T ss_pred ---cccEEEeccceeeeEeeeCCCccCceEE-cCCCcccEEEEEEcCCCcEeccccc---CCceeeEEEcCCCCEEEEec
Confidence 12223332222222 2388865544433 2334567899999988763333322 35689999998432233333
Q ss_pred eCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEE
Q 003878 426 SDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFIS 468 (789)
Q Consensus 426 ~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~ 468 (789)
-....+|.+|+..+-+.+..+..+..-|..++++||+..++..
T Consensus 407 G~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~ 449 (484)
T KOG0305|consen 407 GYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTG 449 (484)
T ss_pred CCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEe
Confidence 3334578888876545545666565667788999999876643
No 173
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=98.45 E-value=1.9e-06 Score=92.34 Aligned_cols=210 Identities=18% Similarity=0.206 Sum_probs=121.0
Q ss_pred EEEEEe-cCCCCCCCCccEEEEEcCCC-CccCCCCC---CHHHHHHHHcCCeEEEEEeecCCC--CCChhHHhcccccCC
Q 003878 523 PMFIVS-KKNIKLDGSHPCLLYGYGGF-NISVTPSF---SVSRTILMRHLGAVFCIANIRGGG--EYGEEWHKGGALAKK 595 (789)
Q Consensus 523 ~~~l~~-p~~~~~~~~~P~ll~~hGg~-~~~~~~~~---~~~~~~~l~~~G~~v~~~~~RG~g--~~g~~~~~~~~~~~~ 595 (789)
..|++. |.+.++ +.-|+|+|+|||. .....|.. -..+..++. ..++++.||.... +.| ..-
T Consensus 107 s~Wlvk~P~~~~p-k~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l~--~~SILvLDYsLt~~~~~~---------~~y 174 (374)
T PF10340_consen 107 SYWLVKAPNRFKP-KSDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLLP--EVSILVLDYSLTSSDEHG---------HKY 174 (374)
T ss_pred eEEEEeCCcccCC-CCCcEEEEEcCCeeEecCCHHHHHHHHHHHHHcC--CCeEEEEeccccccccCC---------CcC
Confidence 367776 655433 3459999999983 22222221 112334454 4588999987543 121 223
Q ss_pred cchHHHHHHHHHHHH-HcCCCCCCcEEEEeeChHHHHHHHHHHh--C---CCceeEEEecCCcccccccccccC------
Q 003878 596 QNCFDDFISASEYLI-SAGYTQSRKLCIEGGSNGGLLVGACINQ--R---PDLFGCALAHVGVMDMLRYHKFTI------ 663 (789)
Q Consensus 596 ~~~~~D~~~~~~~L~-~~~~~d~~~i~i~G~S~GG~l~~~~~~~--~---pd~f~a~v~~~p~~d~~~~~~~~~------ 663 (789)
+.-..++++..++|+ +.|. ++|.++|-||||.|++.++.. . .-.-+.+|+.+|.+++........
T Consensus 175 PtQL~qlv~~Y~~Lv~~~G~---~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~~~~~~~~~~~~~n 251 (374)
T PF10340_consen 175 PTQLRQLVATYDYLVESEGN---KNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLVPQDSQEGSSYHDN 251 (374)
T ss_pred chHHHHHHHHHHHHHhccCC---CeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCcCCCCCCCcccccc
Confidence 444678999999999 5554 589999999999999876532 1 113579999999999873211000
Q ss_pred ------CccchhhcCC----CCcHHHHHHHHhcCcccCCCC-----CCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHH
Q 003878 664 ------GHAWVSDFGC----SEEEEEFYWLIKYSPLHNVRR-----PWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKL 728 (789)
Q Consensus 664 ------~~~~~~e~g~----p~~~~~~~~l~~~sP~~~v~~-----~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~ 728 (789)
.......|+. ..+++. .....|+-++.. .|.+- .....++|+.|+++-. -.+..+|
T Consensus 252 ~~~D~l~~~~~~~~~~~y~~~~~~~~---~~~~~~~~n~~~n~d~~~W~~I----~~~~~vfVi~Ge~Evf--rddI~~~ 322 (374)
T PF10340_consen 252 EKRDMLSYKGLSMFGDAYIGNNDPEN---DLNSLPFVNIEYNFDAEDWKDI----LKKYSVFVIYGEDEVF--RDDILEW 322 (374)
T ss_pred ccccccchhhHHHHHHhhcccccccc---ccccCCccCcccCCChhHHHHh----ccCCcEEEEECCcccc--HHHHHHH
Confidence 0000011111 001111 011223333221 11110 0234799999997754 4588999
Q ss_pred HHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCC
Q 003878 729 LATMQYVLCTSLENSPQTNPIIGRIERKAGHGV 761 (789)
Q Consensus 729 ~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~ 761 (789)
++++....+ ..-+.+....+.+++.|..
T Consensus 323 ~~~~~~~~~-----~~~~~~~nv~~~~~G~Hi~ 350 (374)
T PF10340_consen 323 AKKLNDVKP-----NKFSNSNNVYIDEGGIHIG 350 (374)
T ss_pred HHHHhhcCc-----cccCCcceEEEecCCcccc
Confidence 999986511 1124467888899999975
No 174
>PLN00181 protein SPA1-RELATED; Provisional
Probab=98.45 E-value=8.5e-05 Score=90.71 Aligned_cols=196 Identities=16% Similarity=0.145 Sum_probs=112.3
Q ss_pred cceEEEEeC-CcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEec-CCcEE
Q 003878 237 FSSIAWTHD-SKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE-DGQYL 314 (789)
Q Consensus 237 ~~~~~wspD-g~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~Sp-DG~~l 314 (789)
...++|+|. ++.|+... ....|.+|++.+.. .+..+. .+...+.++.|+| ||..|
T Consensus 535 v~~l~~~~~~~~~las~~-------------------~Dg~v~lWd~~~~~--~~~~~~--~H~~~V~~l~~~p~~~~~L 591 (793)
T PLN00181 535 LSGICWNSYIKSQVASSN-------------------FEGVVQVWDVARSQ--LVTEMK--EHEKRVWSIDYSSADPTLL 591 (793)
T ss_pred eeeEEeccCCCCEEEEEe-------------------CCCeEEEEECCCCe--EEEEec--CCCCCEEEEEEcCCCCCEE
Confidence 467899885 45554332 23468889987642 222233 2344567899997 77777
Q ss_pred EEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEE-ecCCCEEEEEECCCCCCceEEEEECCC
Q 003878 315 VMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVI-ANDDTVFTFLTNKDAPKYKIIRVDLKE 393 (789)
Q Consensus 315 ~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-s~dG~~l~~~tn~~~~~~~L~~~dl~~ 393 (789)
+..+. ...|.++|+.++. ....+..........| +++|..|+..+ .++.|..+|+..
T Consensus 592 ~Sgs~-----Dg~v~iWd~~~~~-------------~~~~~~~~~~v~~v~~~~~~g~~latgs----~dg~I~iwD~~~ 649 (793)
T PLN00181 592 ASGSD-----DGSVKLWSINQGV-------------SIGTIKTKANICCVQFPSESGRSLAFGS----ADHKVYYYDLRN 649 (793)
T ss_pred EEEcC-----CCEEEEEECCCCc-------------EEEEEecCCCeEEEEEeCCCCCEEEEEe----CCCeEEEEECCC
Confidence 65543 3458889987642 1112211111111224 34677666432 346899999876
Q ss_pred CC-CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCC------ceeeecccCCeeEEEeecccCCcEEE
Q 003878 394 PN-DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNG------SLLHQLPIEIGSVNAISARREDSVVF 466 (789)
Q Consensus 394 ~~-~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG------~~~~~l~~~~~~v~~~s~s~d~~~l~ 466 (789)
+. ....+..+. ..+..+.+.+ +..+++...|+ .|.+||+..+ +.+..+..+...+..+++++++..++
T Consensus 650 ~~~~~~~~~~h~--~~V~~v~f~~-~~~lvs~s~D~--~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~la 724 (793)
T PLN00181 650 PKLPLCTMIGHS--KTVSYVRFVD-SSTLVSSSTDN--TLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIA 724 (793)
T ss_pred CCccceEecCCC--CCEEEEEEeC-CCEEEEEECCC--EEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEE
Confidence 54 133343343 4567787775 56666777776 6888998633 22334443344455677888877544
Q ss_pred EEEcCCCCCcEEEEEECCCC
Q 003878 467 ISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 467 ~~~ss~~~P~~ly~~dl~tg 486 (789)
.. + .-..++.|+....
T Consensus 725 sg--s--~D~~v~iw~~~~~ 740 (793)
T PLN00181 725 TG--S--ETNEVFVYHKAFP 740 (793)
T ss_pred EE--e--CCCEEEEEECCCC
Confidence 22 2 3457888887654
No 175
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.43 E-value=0.00018 Score=77.47 Aligned_cols=122 Identities=15% Similarity=0.194 Sum_probs=72.6
Q ss_pred Eec-CCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec-----cccc---eeEEEecCCCEEEEEE
Q 003878 307 VTE-DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-----GFDA---QYEVIANDDTVFTFLT 377 (789)
Q Consensus 307 ~Sp-DG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-----~~~~---~~~~~s~dG~~l~~~t 377 (789)
+++ ||++++++.. ..|+++|+.+..... ..++..... ++.. ....+++||+++|++.
T Consensus 201 ~~~~dg~~~~vs~e------G~V~~id~~~~~~~~--------~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~ 266 (352)
T TIGR02658 201 YSNKSGRLVWPTYT------GKIFQIDLSSGDAKF--------LPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLA 266 (352)
T ss_pred eEcCCCcEEEEecC------CeEEEEecCCCccee--------cceeeeccccccccccCCCcceeEEEcCCCCEEEEEe
Confidence 366 8888776542 559999976532110 111111110 1111 1134788999999966
Q ss_pred CCC------CCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCE-EEEEEEeCCeEEEEEEECCCCceeeec
Q 003878 378 NKD------APKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQ-MIVSYLSDVKYVLQIRDLKNGSLLHQL 446 (789)
Q Consensus 378 n~~------~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~-lv~~~~~~g~~~L~~~dl~tG~~~~~l 446 (789)
+.. .+..+|..+|+++.+....+ +-. ....++++++|++ +++..+.. ...|.++|..+++.++.+
T Consensus 267 ~~~~~~thk~~~~~V~ViD~~t~kvi~~i-~vG--~~~~~iavS~Dgkp~lyvtn~~-s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 267 DQRAKWTHKTASRFLFVVDAKTGKRLRKI-ELG--HEIDSINVSQDAKPLLYALSTG-DKTLYIFDAETGKELSSV 338 (352)
T ss_pred cCCccccccCCCCEEEEEECCCCeEEEEE-eCC--CceeeEEECCCCCeEEEEeCCC-CCcEEEEECcCCeEEeee
Confidence 432 23358999999988733333 222 3456888998766 55444432 346999999988876766
No 176
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.43 E-value=1.4e-05 Score=83.56 Aligned_cols=220 Identities=17% Similarity=0.108 Sum_probs=134.6
Q ss_pred EEEeeeccccceeeeeeec-------------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEE
Q 003878 215 FYLFSLVKSTIYSFWSVVS-------------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHF 281 (789)
Q Consensus 215 ~~~~~s~~~g~~~l~~~~~-------------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 281 (789)
++|.++..+.+.-+|.+.. ...+..+.||||.++++-...++ .+.+|+
T Consensus 237 kyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e-------------------~~~lwD 297 (519)
T KOG0293|consen 237 KYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE-------------------VLSLWD 297 (519)
T ss_pred eeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchH-------------------heeecc
Confidence 5788888888888888876 22246789999999998653322 278888
Q ss_pred CCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccc
Q 003878 282 LGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA 361 (789)
Q Consensus 282 lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~ 361 (789)
..++.. ...|+.. ......+.+|-|||..++..+.+ ..++.+|+++.. ...|.-... ..
T Consensus 298 v~tgd~--~~~y~~~-~~~S~~sc~W~pDg~~~V~Gs~d-----r~i~~wdlDgn~-----------~~~W~gvr~--~~ 356 (519)
T KOG0293|consen 298 VDTGDL--RHLYPSG-LGFSVSSCAWCPDGFRFVTGSPD-----RTIIMWDLDGNI-----------LGNWEGVRD--PK 356 (519)
T ss_pred CCcchh--hhhcccC-cCCCcceeEEccCCceeEecCCC-----CcEEEecCCcch-----------hhccccccc--ce
Confidence 877643 3444433 12335678999999998765533 458899988632 111221110 00
Q ss_pred ee-EEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCC
Q 003878 362 QY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNG 440 (789)
Q Consensus 362 ~~-~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG 440 (789)
.+ ..+++||++++.++. +.++..++.++... +.++.+. ..+.++.+++++++++.-..+. .+.+||++..
T Consensus 357 v~dlait~Dgk~vl~v~~----d~~i~l~~~e~~~d-r~lise~--~~its~~iS~d~k~~LvnL~~q--ei~LWDl~e~ 427 (519)
T KOG0293|consen 357 VHDLAITYDGKYVLLVTV----DKKIRLYNREARVD-RGLISEE--QPITSFSISKDGKLALVNLQDQ--EIHLWDLEEN 427 (519)
T ss_pred eEEEEEcCCCcEEEEEec----ccceeeechhhhhh-hcccccc--CceeEEEEcCCCcEEEEEcccC--eeEEeecchh
Confidence 11 236789999987763 24566667665431 2244433 6688999999777777666554 7899999844
Q ss_pred ceeeecccC---CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 441 SLLHQLPIE---IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 441 ~~~~~l~~~---~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
+.+++.... ...|.+ .+-...+.++. |-..-..+|.|+..+|+
T Consensus 428 ~lv~kY~Ghkq~~fiIrS-CFgg~~~~fia---SGSED~kvyIWhr~sgk 473 (519)
T KOG0293|consen 428 KLVRKYFGHKQGHFIIRS-CFGGGNDKFIA---SGSEDSKVYIWHRISGK 473 (519)
T ss_pred hHHHHhhcccccceEEEe-ccCCCCcceEE---ecCCCceEEEEEccCCc
Confidence 433333222 222321 22111122322 33567899999998886
No 177
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.42 E-value=0.00035 Score=75.04 Aligned_cols=239 Identities=12% Similarity=0.065 Sum_probs=123.8
Q ss_pred EEEeeeccccceeeeeeec------cccc------ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEEC
Q 003878 215 FYLFSLVKSTIYSFWSVVS------QFKF------SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFL 282 (789)
Q Consensus 215 ~~~~~s~~~g~~~l~~~~~------~~~~------~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l 282 (789)
+++|.||++|..|||.+++ |+.. .+..+||+++.|+|.... ..|+..+|
T Consensus 49 kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~-------------------~~l~~vdL 109 (386)
T PF14583_consen 49 KLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNG-------------------RSLRRVDL 109 (386)
T ss_dssp EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETT-------------------TEEEEEET
T ss_pred EEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECC-------------------CeEEEEEC
Confidence 9999999999999999999 4443 357899999999998532 35899999
Q ss_pred CCCCCCcEEEEecCCCCeeEEEEEE--ecCCcEEEEEEEcCCC-----------------CceEEEEEECCCCCCCcccc
Q 003878 283 GTKQSEDILCWKDPEHPKYIFSGHV--TEDGQYLVMCIEENCD-----------------PVNKVYYCDLSALPEGLEGF 343 (789)
Q Consensus 283 g~~~~~~~~~~~~~~~~~~~~~~~~--SpDG~~l~~~~~~~~~-----------------~~~~i~~~d~~~g~~~~~~~ 343 (789)
.|.. ...||+.++. +.....| ..|+..++.....+.+ ..+.|+.+|+.+|.
T Consensus 110 ~T~e--~~~vy~~p~~--~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~------ 179 (386)
T PF14583_consen 110 DTLE--ERVVYEVPDD--WKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE------ 179 (386)
T ss_dssp TT----EEEEEE--TT--EEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--------
T ss_pred CcCc--EEEEEECCcc--cccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc------
Confidence 8863 4578888754 3333444 4678887655433311 34689999999863
Q ss_pred cccCCCCccEeee-ccccceeEEEecCCCEEEEEECCC---CCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecC-C
Q 003878 344 KKRDGLLPFVKLI-DGFDAQYEVIANDDTVFTFLTNKD---APKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-N 418 (789)
Q Consensus 344 ~~~~~~~~~~~l~-~~~~~~~~~~s~dG~~l~~~tn~~---~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~-~ 418 (789)
...+. .........+||....++..+.++ .-..||+.++.++.. .+.+.++.+...+.-=.|.++ .
T Consensus 180 --------~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~-~~~v~~~~~~e~~gHEfw~~DG~ 250 (386)
T PF14583_consen 180 --------RKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN-VKKVHRRMEGESVGHEFWVPDGS 250 (386)
T ss_dssp --------EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS---TTEEEEEEEE-TTSS
T ss_pred --------eeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCc-ceeeecCCCCcccccccccCCCC
Confidence 22222 222234556788544444444442 224589999988765 566666554444433345664 4
Q ss_pred EEEE-EEEeCCe-EEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcC-C-----------CCCcEEEEEECC
Q 003878 419 QMIV-SYLSDVK-YVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTS-F-----------LIPGIVYQCNLK 484 (789)
Q Consensus 419 ~lv~-~~~~~g~-~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss-~-----------~~P~~ly~~dl~ 484 (789)
.+++ .+...+. ..|..+++++++.......| ..+ .+..++|++.++=--+. + ..-+-+|++++.
T Consensus 251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p-~~~-H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~ 328 (386)
T PF14583_consen 251 TIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP-WCS-HFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVE 328 (386)
T ss_dssp -EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEE-EEEE-TTSSEEEEEE-------------------EEEEEETT
T ss_pred EEEEEeecCCCCceEEEeeCCCCCCceEEEeCC-cee-eeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccc
Confidence 4544 4444443 36788899988762222233 222 34456676643221111 1 112377888888
Q ss_pred CCCceEEEeee
Q 003878 485 TETPEMKIFRE 495 (789)
Q Consensus 485 tg~~~~~~l~~ 495 (789)
++. ...+..
T Consensus 329 ~~~--~~~l~~ 337 (386)
T PF14583_consen 329 AGR--FRKLAR 337 (386)
T ss_dssp TTE--EEEEEE
T ss_pred cCc--eeeeee
Confidence 773 444443
No 178
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=98.41 E-value=1.2e-06 Score=92.47 Aligned_cols=113 Identities=11% Similarity=0.050 Sum_probs=78.8
Q ss_pred CCccEEEEEcCCCCccCCCCCCHH-HHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCC
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVS-RTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGY 614 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~-~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~ 614 (789)
...|++|++||..+.. ...|... ...++...++.|+++|+++++... +..+. ..-...-+++...+++|.+...
T Consensus 34 ~~~p~vilIHG~~~~~-~~~~~~~l~~~ll~~~~~nVi~vD~~~~~~~~--y~~a~--~~~~~v~~~la~~l~~L~~~~g 108 (275)
T cd00707 34 PSRPTRFIIHGWTSSG-EESWISDLRKAYLSRGDYNVIVVDWGRGANPN--YPQAV--NNTRVVGAELAKFLDFLVDNTG 108 (275)
T ss_pred CCCCcEEEEcCCCCCC-CCcHHHHHHHHHHhcCCCEEEEEECccccccC--hHHHH--HhHHHHHHHHHHHHHHHHHhcC
Confidence 4578999999965543 2233322 234666568999999999863321 11110 0111122567778888887755
Q ss_pred CCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcc
Q 003878 615 TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 653 (789)
Q Consensus 615 ~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~ 653 (789)
.+.++|.++|||+||.+++.++.+.|++++.++...|..
T Consensus 109 ~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa~ 147 (275)
T cd00707 109 LSLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPAG 147 (275)
T ss_pred CChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCCc
Confidence 678899999999999999999999999999999887654
No 179
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.41 E-value=2.9e-05 Score=90.57 Aligned_cols=267 Identities=14% Similarity=0.058 Sum_probs=135.1
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
+...+.-+.|||||++|| .|+|..-|-||+-+.. ...+++| -+....+++.-|.+
T Consensus 68 h~~sv~CVR~S~dG~~lA-----sGSDD~~v~iW~~~~~-----~~~~~fg-----------s~g~~~~vE~wk~~---- 122 (942)
T KOG0973|consen 68 HDGSVNCVRFSPDGSYLA-----SGSDDRLVMIWERAEI-----GSGTVFG-----------STGGAKNVESWKVV---- 122 (942)
T ss_pred ccCceeEEEECCCCCeEe-----eccCcceEEEeeeccc-----CCccccc-----------ccccccccceeeEE----
Confidence 456688899999999999 5777888888987741 1111100 00001111111100
Q ss_pred cceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCc
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED 289 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~ 289 (789)
..+... .-++..++||||+..++-...+ +.|.+|+.-+- +.
T Consensus 123 ------~~l~~H------------~~DV~Dv~Wsp~~~~lvS~s~D-------------------nsViiwn~~tF--~~ 163 (942)
T KOG0973|consen 123 ------SILRGH------------DSDVLDVNWSPDDSLLVSVSLD-------------------NSVIIWNAKTF--EL 163 (942)
T ss_pred ------EEEecC------------CCccceeccCCCccEEEEeccc-------------------ceEEEEccccc--ee
Confidence 111111 1146789999999888755333 34667766554 23
Q ss_pred EEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCc-ccccccCCCCccEeeeccccceeEEEec
Q 003878 290 ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGL-EGFKKRDGLLPFVKLIDGFDAQYEVIAN 368 (789)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~s~ 368 (789)
..++.. |...+-++.|.|-|+|++-.+.++ . |.++.+.+ .+. ..+ ..++.......-..-..|||
T Consensus 164 ~~vl~~--H~s~VKGvs~DP~Gky~ASqsdDr---t--ikvwrt~d--w~i~k~I-----t~pf~~~~~~T~f~RlSWSP 229 (942)
T KOG0973|consen 164 LKVLRG--HQSLVKGVSWDPIGKYFASQSDDR---T--LKVWRTSD--WGIEKSI-----TKPFEESPLTTFFLRLSWSP 229 (942)
T ss_pred eeeeec--ccccccceEECCccCeeeeecCCc---e--EEEEEccc--ceeeEee-----ccchhhCCCcceeeecccCC
Confidence 334443 334456899999999998776443 2 44444332 000 000 01111100000001123999
Q ss_pred CCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEec----C--C-----------EEEEEEEeCCeEE
Q 003878 369 DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN----L--N-----------QMIVSYLSDVKYV 431 (789)
Q Consensus 369 dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~----~--~-----------~lv~~~~~~g~~~ 431 (789)
||++|.....-+++...+-.++-.+=+.-..++.|.. .++=+.+.+ + + -+++.+..|+ .
T Consensus 230 DG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~--p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDr--S 305 (942)
T KOG0973|consen 230 DGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSA--PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDR--S 305 (942)
T ss_pred CcCeecchhhccCCcceeEEEecCCceeeeeeecCCC--ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCc--c
Confidence 9999886543344444444444322111124555542 222222111 0 1 1556666776 5
Q ss_pred EEEEECCCCceeeecc--cC--CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCC
Q 003878 432 LQIRDLKNGSLLHQLP--IE--IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKT 485 (789)
Q Consensus 432 L~~~dl~tG~~~~~l~--~~--~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~t 485 (789)
|-+|... .. +.+- .. .-.|..++|++||-.++.. ..-++++.+.++.
T Consensus 306 lSVW~T~--~~-RPl~vi~~lf~~SI~DmsWspdG~~Lfac----S~DGtV~~i~Fee 356 (942)
T KOG0973|consen 306 LSVWNTA--LP-RPLFVIHNLFNKSIVDMSWSPDGFSLFAC----SLDGTVALIHFEE 356 (942)
T ss_pred EEEEecC--CC-CchhhhhhhhcCceeeeeEcCCCCeEEEE----ecCCeEEEEEcch
Confidence 7777753 22 3332 11 3456678999998766532 1234666666543
No 180
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=98.41 E-value=6.1e-05 Score=76.56 Aligned_cols=262 Identities=17% Similarity=0.127 Sum_probs=136.5
Q ss_pred eccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccc
Q 003878 121 LDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVP 200 (789)
Q Consensus 121 ~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 200 (789)
+|.++|. ++.-.+..+.+|.|||+||-... ..+|++|++..=+.. .-..+ ..++|
T Consensus 77 l~~~~LK-gH~~~vt~~~FsSdGK~lat~~~-----Dr~Ir~w~~~DF~~~--eHr~~-----------------R~nve 131 (420)
T KOG2096|consen 77 LNVSVLK-GHKKEVTDVAFSSDGKKLATISG-----DRSIRLWDVRDFENK--EHRCI-----------------RQNVE 131 (420)
T ss_pred hhhhhhh-ccCCceeeeEEcCCCceeEEEeC-----CceEEEEecchhhhh--hhhHh-----------------hcccc
Confidence 4555553 44456889999999999995542 458999998762111 10111 22333
Q ss_pred ccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEE
Q 003878 201 TYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYH 280 (789)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 280 (789)
.++ ...++|+||-+.|++.-... ..++++
T Consensus 132 ~dh---------------------------------pT~V~FapDc~s~vv~~~~g------------------~~l~vy 160 (420)
T KOG2096|consen 132 YDH---------------------------------PTRVVFAPDCKSVVVSVKRG------------------NKLCVY 160 (420)
T ss_pred CCC---------------------------------ceEEEECCCcceEEEEEccC------------------CEEEEE
Confidence 332 36789999999998875432 334544
Q ss_pred ECCCC--CC-------CcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCc
Q 003878 281 FLGTK--QS-------EDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLP 351 (789)
Q Consensus 281 ~lg~~--~~-------~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 351 (789)
.+... .+ .|-+-|++. +...+.+...-..+++|+-.+. .++|.++++.+. .
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~f~~k-h~v~~i~iGiA~~~k~imsas~-----dt~i~lw~lkGq--------------~ 220 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLEFERK-HQVDIINIGIAGNAKYIMSASL-----DTKICLWDLKGQ--------------L 220 (420)
T ss_pred EeeecccCCCCcccccccccccchh-cccceEEEeecCCceEEEEecC-----CCcEEEEecCCc--------------e
Confidence 43211 10 111112221 1122234444555666654332 366899998852 1
Q ss_pred cEeeecc-ccceeEEEecCCCEEEEEECCCCCCceEEEEECC-CCC--CeEEeccCC-CCceeeeEEEecCCEEEEEEEe
Q 003878 352 FVKLIDG-FDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLK-EPN--DWFEVIPEA-ERDVLESATAVNLNQMIVSYLS 426 (789)
Q Consensus 352 ~~~l~~~-~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~-~~~--~~~~l~~~~-~~~~i~~v~~~~~~~lv~~~~~ 426 (789)
+..+-.. .......+||+|+.++...- .++.+++-.=.. .|+ ....++.-. ....+..++++++..-+++.+.
T Consensus 221 L~~idtnq~~n~~aavSP~GRFia~~gF--TpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSk 298 (420)
T KOG2096|consen 221 LQSIDTNQSSNYDAAVSPDGRFIAVSGF--TPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSK 298 (420)
T ss_pred eeeeccccccccceeeCCCCcEEEEecC--CCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEec
Confidence 1111111 11112458999987764322 133444433222 222 122222211 1134566778876677888888
Q ss_pred CCeEEEEEEECC----CCceeeecc---cC---Ce-eEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 427 DVKYVLQIRDLK----NGSLLHQLP---IE---IG-SVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 427 ~g~~~L~~~dl~----tG~~~~~l~---~~---~~-~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
||. .++||.+ -|+-.+.|. .| .+ .--.++.+|.++.+++++.| .+..|..++|+
T Consensus 299 DG~--wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs-----~l~~~~se~g~ 363 (420)
T KOG2096|consen 299 DGK--WRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGS-----DLKVFASEDGK 363 (420)
T ss_pred CCc--EEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCC-----ceEEEEcccCc
Confidence 984 4555543 122112221 11 11 11246788999999887755 56677776664
No 181
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=98.40 E-value=2.3e-06 Score=87.82 Aligned_cols=194 Identities=16% Similarity=0.090 Sum_probs=116.1
Q ss_pred eEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCC----eEEEEEeecCCCCCChhHHhcccccCC
Q 003878 520 TKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLG----AVFCIANIRGGGEYGEEWHKGGALAKK 595 (789)
Q Consensus 520 ~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G----~~v~~~~~RG~g~~g~~~~~~~~~~~~ 595 (789)
.+..+.++.|.+..+..++|+++..||-......+-. .....+++ .| .+++.+++----...+.++ .
T Consensus 80 ~~~~~vv~lppgy~~~~k~pvl~~~DG~~~~~~g~i~-~~~dsli~-~g~i~pai~vgid~~d~~~R~~~~~-------~ 150 (299)
T COG2382 80 SERRRVVYLPPGYNPLEKYPVLYLQDGQDWFRSGRIP-RILDSLIA-AGEIPPAILVGIDYIDVKKRREELH-------C 150 (299)
T ss_pred cceeEEEEeCCCCCccccccEEEEeccHHHHhcCChH-HHHHHHHH-cCCCCCceEEecCCCCHHHHHHHhc-------c
Confidence 3556778889988888999999999996443333221 22345555 45 4666666421111001111 1
Q ss_pred cchHHHHHH--HHHHHHHcC--CCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhc
Q 003878 596 QNCFDDFIS--ASEYLISAG--YTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDF 671 (789)
Q Consensus 596 ~~~~~D~~~--~~~~L~~~~--~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~ 671 (789)
...+.++++ .+=++.+.- .-++++-+++|.|+||+.+++++.++|++|..+++++|.++..-... . .++
T Consensus 151 n~~~~~~L~~eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~~~~~~~--~-----~~~ 223 (299)
T COG2382 151 NEAYWRFLAQELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFWWTPLDT--Q-----PQG 223 (299)
T ss_pred cHHHHHHHHHHhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeeccCCccccCcccc--c-----ccc
Confidence 112222211 122222221 23678899999999999999999999999999999999776421110 0 111
Q ss_pred CCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEE
Q 003878 672 GCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIG 751 (789)
Q Consensus 672 g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l 751 (789)
. .. ...+-++.+... ..-++...+..+...++. +.+++.|+.. +.+..+
T Consensus 224 ~------~~---~~l~~~~a~~~~----------~~~~l~~g~~~~~~~~pN--r~L~~~L~~~----------g~~~~y 272 (299)
T COG2382 224 E------VA---ESLKILHAIGTD----------ERIVLTTGGEEGDFLRPN--RALAAQLEKK----------GIPYYY 272 (299)
T ss_pred c------hh---hhhhhhhccCcc----------ceEEeecCCccccccchh--HHHHHHHHhc----------CCccee
Confidence 0 11 111122223322 335566666666666654 5788899887 999999
Q ss_pred EEeCCCCcCC
Q 003878 752 RIERKAGHGV 761 (789)
Q Consensus 752 ~~~~~~gH~~ 761 (789)
..|+| ||-.
T Consensus 273 re~~G-gHdw 281 (299)
T COG2382 273 REYPG-GHDW 281 (299)
T ss_pred eecCC-CCch
Confidence 99988 9965
No 182
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.39 E-value=0.00066 Score=70.46 Aligned_cols=149 Identities=13% Similarity=0.117 Sum_probs=91.2
Q ss_pred eeEEEEEEecCCcEEEEEEEcCCC--Cc--eEEEEEECCCCCCCcccccccCCCCccEeeeccccce-eEEEecCCCEEE
Q 003878 300 KYIFSGHVTEDGQYLVMCIEENCD--PV--NKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ-YEVIANDDTVFT 374 (789)
Q Consensus 300 ~~~~~~~~SpDG~~l~~~~~~~~~--~~--~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dG~~l~ 374 (789)
.....+.++|||+ |+++...... .. ..||.++.+ +. ...+..+.... --.|+|||+.||
T Consensus 86 ~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~--------------~~~~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 86 NRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GK--------------VTVVADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp EEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SE--------------EEEEEEEESSEEEEEEETTSSEEE
T ss_pred CCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-Ce--------------EEEEecCcccccceEECCcchhee
Confidence 4456789999999 6666543321 11 579999887 31 12222222211 234899999998
Q ss_pred EEECCCCCCceEEEEECCCCC----CeEEeccCCC-CceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC
Q 003878 375 FLTNKDAPKYKIIRVDLKEPN----DWFEVIPEAE-RDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE 449 (789)
Q Consensus 375 ~~tn~~~~~~~L~~~dl~~~~----~~~~l~~~~~-~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~ 449 (789)
+... ...+|++++++... ..+.+..... .....++++..++.|++.....+ +|++++.+ |+.+..+.+|
T Consensus 150 v~ds---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~--~I~~~~p~-G~~~~~i~~p 223 (246)
T PF08450_consen 150 VADS---FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGG--RIVVFDPD-GKLLREIELP 223 (246)
T ss_dssp EEET---TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTT--EEEEEETT-SCEEEEEE-S
T ss_pred eccc---ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCC--EEEEECCC-ccEEEEEcCC
Confidence 7543 35689999986432 1122322221 12467899988788888766554 89999998 8887888888
Q ss_pred CeeEEEeec-ccCCcEEEEEEc
Q 003878 450 IGSVNAISA-RREDSVVFISFT 470 (789)
Q Consensus 450 ~~~v~~~s~-s~d~~~l~~~~s 470 (789)
...++.+.+ -++.+.|+++..
T Consensus 224 ~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 224 VPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp SSSEEEEEEESTTSSEEEEEEB
T ss_pred CCCEEEEEEECCCCCEEEEEeC
Confidence 445666666 467788888653
No 183
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=98.39 E-value=4.2e-06 Score=86.95 Aligned_cols=216 Identities=17% Similarity=0.114 Sum_probs=83.5
Q ss_pred CccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecC-CCCCChhHHhcccccCCcchHHHHHHHHHHHHHcC--
Q 003878 537 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRG-GGEYGEEWHKGGALAKKQNCFDDFISASEYLISAG-- 613 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG-~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~-- 613 (789)
+.-+||++-|-........|-+.....|.+.||.++.+..+- .+++|..-. .++.+|+.++++||....
T Consensus 32 ~~~~llfIGGLtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~~SL--------~~D~~eI~~~v~ylr~~~~g 103 (303)
T PF08538_consen 32 APNALLFIGGLTDGLLTVPYLPDLAEALEETGWSLFQVQLSSSYSGWGTSSL--------DRDVEEIAQLVEYLRSEKGG 103 (303)
T ss_dssp SSSEEEEE--TT--TT-STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S--H--------HHHHHHHHHHHHHHHHHS--
T ss_pred CCcEEEEECCCCCCCCCCchHHHHHHHhccCCeEEEEEEecCccCCcCcchh--------hhHHHHHHHHHHHHHHhhcc
Confidence 345788887765545555566666777776899999999986 345553222 346799999999999873
Q ss_pred CCCCCcEEEEeeChHHHHHHHHHHhCC-----CceeEEEecCCcccccccccccC-------------------------
Q 003878 614 YTQSRKLCIEGGSNGGLLVGACINQRP-----DLFGCALAHVGVMDMLRYHKFTI------------------------- 663 (789)
Q Consensus 614 ~~d~~~i~i~G~S~GG~l~~~~~~~~p-----d~f~a~v~~~p~~d~~~~~~~~~------------------------- 663 (789)
....++|+++|||-|---++.++.... ..+.++|+++||.|-........
T Consensus 104 ~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDREa~~~~~~~~~~~~~~v~~A~~~i~~g~~~~~l 183 (303)
T PF08538_consen 104 HFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDREAILNFLGEREAYEELVALAKELIAEGKGDEIL 183 (303)
T ss_dssp ----S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TTSTTTSHHH---HHHHHHHHHHHHHCT-TT-GG
T ss_pred ccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChhHhhhcccchHHHHHHHHHHHHHHHcCCCCcee
Confidence 236789999999999999888887642 46999999999998543321100
Q ss_pred Cccchhh--cCCCCcHHHHHHHHhcCcc------------c----CCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHH-
Q 003878 664 GHAWVSD--FGCSEEEEEFYWLIKYSPL------------H----NVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH- 724 (789)
Q Consensus 664 ~~~~~~e--~g~p~~~~~~~~l~~~sP~------------~----~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~- 724 (789)
+..+... |+.|-.+ ++++--.+|- . ....+ ..|+|++.+.+|.-||.+-
T Consensus 184 p~~~~~~~~~~~PiTA--~Rf~SL~s~~gdDD~FSSDL~de~l~~tfG~v----------~~plLvl~Sg~DEyvP~~vd 251 (303)
T PF08538_consen 184 PREFTPLVFYDTPITA--YRFLSLASPGGDDDYFSSDLSDERLKKTFGKV----------SKPLLVLYSGKDEYVPPWVD 251 (303)
T ss_dssp ----GGTTT-SS---H--HHHHT-S-SSHHHHTHHHHHTT-HHHHTGGG------------S-EEEEEE--TT-------
T ss_pred eccccccccCCCcccH--HHHHhccCCCCcccccCCCCCHHHHHHHhccC----------CCceEEEecCCCceeccccc
Confidence 0000000 1222221 1111111111 0 11122 4599999999999999864
Q ss_pred HHHHHHHHHHhhccCCCCCCCCC-cEEEEEeCCCCcCCCCchhh--HHHHHHHHHHHH
Q 003878 725 SLKLLATMQYVLCTSLENSPQTN-PIIGRIERKAGHGVGLPTQK--MIDEAADRYGFM 779 (789)
Q Consensus 725 ~~~~~~~L~~~~~~~~~~~~~~~-~~~l~~~~~~gH~~~~~~~~--~~~~~~~~~~fl 779 (789)
-.++.++++.+. ..+. .-.-.+.||++|....+..+ +.....++..||
T Consensus 252 k~~Ll~rw~~a~-------~~~~~s~~S~iI~GA~H~~~~~~~~~~~~~l~~rV~~fl 302 (303)
T PF08538_consen 252 KEALLERWKAAT-------NPKIWSPLSGIIPGASHNVSGPSQAEAREWLVERVVKFL 302 (303)
T ss_dssp ----------------------------------------------------------
T ss_pred cccccccccccc-------ccccccccccccccccccccccccccccccccccccccC
Confidence 456777777651 1111 12355789999998754442 123455667766
No 184
>PTZ00420 coronin; Provisional
Probab=98.39 E-value=0.00045 Score=79.36 Aligned_cols=204 Identities=9% Similarity=-0.063 Sum_probs=109.8
Q ss_pred cceEEEEeC-CcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCC------CcEEEEecCCCCeeEEEEEEec
Q 003878 237 FSSIAWTHD-SKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQS------EDILCWKDPEHPKYIFSGHVTE 309 (789)
Q Consensus 237 ~~~~~wspD-g~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~------~~~~~~~~~~~~~~~~~~~~Sp 309 (789)
...++|+|+ +..|+-.. ....|.+|++.+... +.+..+.. +...+..+.|+|
T Consensus 77 V~~lafsP~~~~lLASgS-------------------~DgtIrIWDi~t~~~~~~~i~~p~~~L~g--H~~~V~sVaf~P 135 (568)
T PTZ00420 77 ILDLQFNPCFSEILASGS-------------------EDLTIRVWEIPHNDESVKEIKDPQCILKG--HKKKISIIDWNP 135 (568)
T ss_pred EEEEEEcCCCCCEEEEEe-------------------CCCeEEEEECCCCCccccccccceEEeec--CCCcEEEEEECC
Confidence 578999997 45554332 223588888865321 11112222 334467899999
Q ss_pred CCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEE
Q 003878 310 DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRV 389 (789)
Q Consensus 310 DG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~ 389 (789)
++..+++++.. ...|.++|+.++. ....+..........|+++|+.|+..+ .+..|..+
T Consensus 136 ~g~~iLaSgS~----DgtIrIWDl~tg~-------------~~~~i~~~~~V~SlswspdG~lLat~s----~D~~IrIw 194 (568)
T PTZ00420 136 MNYYIMCSSGF----DSFVNIWDIENEK-------------RAFQINMPKKLSSLKWNIKGNLLSGTC----VGKHMHII 194 (568)
T ss_pred CCCeEEEEEeC----CCeEEEEECCCCc-------------EEEEEecCCcEEEEEECCCCCEEEEEe----cCCEEEEE
Confidence 99988766532 3458889998742 111121111112234899999776433 23578999
Q ss_pred ECCCCCCeEEeccCCCCceeeeEE---EecCCEEEEEEEeCC--eEEEEEEECCC-CceeeecccC--CeeEEEeecccC
Q 003878 390 DLKEPNDWFEVIPEAERDVLESAT---AVNLNQMIVSYLSDV--KYVLQIRDLKN-GSLLHQLPIE--IGSVNAISARRE 461 (789)
Q Consensus 390 dl~~~~~~~~l~~~~~~~~i~~v~---~~~~~~lv~~~~~~g--~~~L~~~dl~t-G~~~~~l~~~--~~~v~~~s~s~d 461 (789)
|+.+++....+..+........+. +++++..+++...+. ..+|.+||+.+ ++.+..+..+ .+.+ ...++++
T Consensus 195 D~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L-~p~~D~~ 273 (568)
T PTZ00420 195 DPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPL-IPHYDES 273 (568)
T ss_pred ECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccce-EEeeeCC
Confidence 998876334443343211111121 224344444444332 24799999874 3433333332 2222 1234455
Q ss_pred CcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 462 DSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 462 ~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
...++++.. .-..++.|++.++
T Consensus 274 tg~l~lsGk---GD~tIr~~e~~~~ 295 (568)
T PTZ00420 274 TGLIYLIGK---GDGNCRYYQHSLG 295 (568)
T ss_pred CCCEEEEEE---CCCeEEEEEccCC
Confidence 555555442 3457888887666
No 185
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=98.38 E-value=8.2e-05 Score=73.81 Aligned_cols=231 Identities=12% Similarity=0.085 Sum_probs=134.9
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
++..+..+.|+|-..-+.++.+ +| .+|++||+.+++.+... ....
T Consensus 63 h~~svdql~w~~~~~d~~atas-~d---k~ir~wd~r~~k~~~~i-~~~~------------------------------ 107 (313)
T KOG1407|consen 63 HTDSVDQLCWDPKHPDLFATAS-GD---KTIRIWDIRSGKCTARI-ETKG------------------------------ 107 (313)
T ss_pred CCcchhhheeCCCCCcceEEec-CC---ceEEEEEeccCcEEEEe-eccC------------------------------
Confidence 3445667778876665554443 23 48999999999876532 2211
Q ss_pred cceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCc
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED 289 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~ 289 (789)
..-.+.|||||.++++...+. .|-..+..+-.
T Consensus 108 --------------------------eni~i~wsp~g~~~~~~~kdD-------------------~it~id~r~~~--- 139 (313)
T KOG1407|consen 108 --------------------------ENINITWSPDGEYIAVGNKDD-------------------RITFIDARTYK--- 139 (313)
T ss_pred --------------------------cceEEEEcCCCCEEEEecCcc-------------------cEEEEEecccc---
Confidence 135789999999999875432 23333332211
Q ss_pred EEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeE-EEec
Q 003878 290 ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYE-VIAN 368 (789)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~ 368 (789)
.+-+++. ........|+.++...+++...++ |-++.-... +|+..+......-+. .++|
T Consensus 140 -~~~~~~~-~~e~ne~~w~~~nd~Fflt~GlG~-----v~ILsypsL-------------kpv~si~AH~snCicI~f~p 199 (313)
T KOG1407|consen 140 -IVNEEQF-KFEVNEISWNNSNDLFFLTNGLGC-----VEILSYPSL-------------KPVQSIKAHPSNCICIEFDP 199 (313)
T ss_pred -eeehhcc-cceeeeeeecCCCCEEEEecCCce-----EEEEecccc-------------ccccccccCCcceEEEEECC
Confidence 1111111 222345678877776665543222 333333221 122233222221222 3899
Q ss_pred CCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeeccc
Q 003878 369 DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI 448 (789)
Q Consensus 369 dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~ 448 (789)
+|++|++ ++.+..+-++|++.-- ....++-- +..+..++++-+++++++.++|- -|-+-+.+||..+.+|+-
T Consensus 200 ~GryfA~----GsADAlvSLWD~~ELi-C~R~isRl-dwpVRTlSFS~dg~~lASaSEDh--~IDIA~vetGd~~~eI~~ 271 (313)
T KOG1407|consen 200 DGRYFAT----GSADALVSLWDVDELI-CERCISRL-DWPVRTLSFSHDGRMLASASEDH--FIDIAEVETGDRVWEIPC 271 (313)
T ss_pred CCceEee----ccccceeeccChhHhh-hheeeccc-cCceEEEEeccCcceeeccCccc--eEEeEecccCCeEEEeec
Confidence 9999885 2334556677876532 22333333 36688899988789999999886 455667778987677754
Q ss_pred CCeeEEEeecccCCcEEEEEEcCC
Q 003878 449 EIGSVNAISARREDSVVFISFTSF 472 (789)
Q Consensus 449 ~~~~v~~~s~s~d~~~l~~~~ss~ 472 (789)
. +....++|.|....|+|+.+..
T Consensus 272 ~-~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 272 E-GPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred c-CCceeEEecCCCceeeEEecCC
Confidence 3 2333578889888888877653
No 186
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=98.35 E-value=2.7e-05 Score=79.02 Aligned_cols=140 Identities=22% Similarity=0.233 Sum_probs=81.5
Q ss_pred EEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCe-EEEEEeecC---------CC
Q 003878 511 VFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGA-VFCIANIRG---------GG 580 (789)
Q Consensus 511 ~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~-~v~~~~~RG---------~g 580 (789)
..+.+.++-.+-.+++..|++..++.++|||-+.=|.- ..+.........+++.=. ..+...++. ..
T Consensus 12 ~~l~s~~~~~~yri~i~~P~~~~~~~~YpVlY~lDGn~---vf~~~~~~~~~~~~~~~~~~iv~iGye~~~~~~~~~r~~ 88 (264)
T COG2819 12 RDLKSANTGRKYRIFIATPKNYPKPGGYPVLYMLDGNA---VFNALTEIMLRILADLPPPVIVGIGYETILVFDPNRRAY 88 (264)
T ss_pred EeeeecCCCcEEEEEecCCCCCCCCCCCcEEEEecchh---hhchHHHHhhhhhhcCCCceEEEeccccccccccccccc
Confidence 33445443167788999999987777789876666642 122222222344442221 122222222 22
Q ss_pred CCChhH--H-hccc------ccCCcchHHH-HHHHHHHHHHcCC-CCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEec
Q 003878 581 EYGEEW--H-KGGA------LAKKQNCFDD-FISASEYLISAGY-TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAH 649 (789)
Q Consensus 581 ~~g~~~--~-~~~~------~~~~~~~~~D-~~~~~~~L~~~~~-~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~ 649 (789)
.|-+.- . .+.. ...+...|.+ +..-+.=++++.| +++++.+|+|||+||++++.++..+|+.|...++.
T Consensus 89 DyTp~~~~~~~~~~~~~~~~~gGg~~~f~~fL~~~lkP~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~ 168 (264)
T COG2819 89 DYTPPSANAIVASSRDGFYQFGGGGDAFREFLTEQLKPFIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLI 168 (264)
T ss_pred cCCCCCCCcccccccCCCCCCCCChHHHHHHHHHhhHHHHhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeee
Confidence 221110 0 0101 0111223433 3455666666654 79999999999999999999999999999999999
Q ss_pred CCcc
Q 003878 650 VGVM 653 (789)
Q Consensus 650 ~p~~ 653 (789)
+|-+
T Consensus 169 SPSl 172 (264)
T COG2819 169 SPSL 172 (264)
T ss_pred cchh
Confidence 9843
No 187
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.35 E-value=9.6e-05 Score=76.53 Aligned_cols=203 Identities=13% Similarity=0.067 Sum_probs=125.3
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
++..+-.++++|+.+++| .|++.-.-++|++.+|+..- .++.. ++
T Consensus 63 H~~svFavsl~P~~~l~a-----TGGgDD~AflW~~~~ge~~~-eltgH---------------------KD-------- 107 (399)
T KOG0296|consen 63 HTDSVFAVSLHPNNNLVA-----TGGGDDLAFLWDISTGEFAG-ELTGH---------------------KD-------- 107 (399)
T ss_pred cCCceEEEEeCCCCceEE-----ecCCCceEEEEEccCCccee-EecCC---------------------CC--------
Confidence 445677889999888777 56666788999999997432 33333 11
Q ss_pred cceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCc
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED 289 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~ 289 (789)
.+....||.||..|+-. ...-+|.+|+..++..+-
T Consensus 108 --------------------------SVt~~~FshdgtlLATG-------------------dmsG~v~v~~~stg~~~~ 142 (399)
T KOG0296|consen 108 --------------------------SVTCCSFSHDGTLLATG-------------------DMSGKVLVFKVSTGGEQW 142 (399)
T ss_pred --------------------------ceEEEEEccCceEEEec-------------------CCCccEEEEEcccCceEE
Confidence 25788999999877632 233468888888765443
Q ss_pred EEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccce--eEEEe
Q 003878 290 ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ--YEVIA 367 (789)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~s 367 (789)
. +..+-+ .+..+.|.|-+..|++.+.+ ..+|++.+..+. ..++..+.... -..+.
T Consensus 143 ~-~~~e~~---dieWl~WHp~a~illAG~~D-----GsvWmw~ip~~~--------------~~kv~~Gh~~~ct~G~f~ 199 (399)
T KOG0296|consen 143 K-LDQEVE---DIEWLKWHPRAHILLAGSTD-----GSVWMWQIPSQA--------------LCKVMSGHNSPCTCGEFI 199 (399)
T ss_pred E-eecccC---ceEEEEecccccEEEeecCC-----CcEEEEECCCcc--------------eeeEecCCCCCccccccc
Confidence 2 222212 24578999999888877654 348999887621 23344432211 23378
Q ss_pred cCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCce
Q 003878 368 NDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSL 442 (789)
Q Consensus 368 ~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~ 442 (789)
|||+++..... ++.|.++++++++....+. ..+...+.-+.......+++....++ ..++.+..+|+.
T Consensus 200 pdGKr~~tgy~----dgti~~Wn~ktg~p~~~~~-~~e~~~~~~~~~~~~~~~~~~g~~e~--~~~~~~~~sgKV 267 (399)
T KOG0296|consen 200 PDGKRILTGYD----DGTIIVWNPKTGQPLHKIT-QAEGLELPCISLNLAGSTLTKGNSEG--VACGVNNGSGKV 267 (399)
T ss_pred CCCceEEEEec----CceEEEEecCCCceeEEec-ccccCcCCccccccccceeEeccCCc--cEEEEccccceE
Confidence 99999875433 5789999999987333332 22222333444444456666666665 345555555554
No 188
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=0.0016 Score=66.61 Aligned_cols=245 Identities=13% Similarity=0.094 Sum_probs=147.6
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
..+.++.+|+||..|+-.. +.-+|+++|..+|..+. ++..- .
T Consensus 15 ~~i~sl~fs~~G~~litss-----~dDsl~LYd~~~g~~~~-ti~sk----------------------k---------- 56 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSS-----EDDSLRLYDSLSGKQVK-TINSK----------------------K---------- 56 (311)
T ss_pred CceeEEEecCCCCEEEEec-----CCCeEEEEEcCCCceee-Eeecc----------------------c----------
Confidence 3578899999999998532 23479999999997653 22211 0
Q ss_pred eeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEE
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL 291 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~ 291 (789)
+-...+.|......+.++... ....|++..+-+. +=+.
T Consensus 57 -----------------------yG~~~~~Fth~~~~~i~sStk-----------------~d~tIryLsl~dN--kylR 94 (311)
T KOG1446|consen 57 -----------------------YGVDLACFTHHSNTVIHSSTK-----------------EDDTIRYLSLHDN--KYLR 94 (311)
T ss_pred -----------------------ccccEEEEecCCceEEEccCC-----------------CCCceEEEEeecC--ceEE
Confidence 013567888888888887531 2345777776543 2233
Q ss_pred EEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCC
Q 003878 292 CWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDT 371 (789)
Q Consensus 292 ~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~ 371 (789)
.|.+ |...+.++..||-+...+-.+. ...|++||+...+ -+....+. ......++|.|-
T Consensus 95 YF~G--H~~~V~sL~~sP~~d~FlS~S~-----D~tvrLWDlR~~~-----------cqg~l~~~---~~pi~AfDp~GL 153 (311)
T KOG1446|consen 95 YFPG--HKKRVNSLSVSPKDDTFLSSSL-----DKTVRLWDLRVKK-----------CQGLLNLS---GRPIAAFDPEGL 153 (311)
T ss_pred EcCC--CCceEEEEEecCCCCeEEeccc-----CCeEEeeEecCCC-----------CceEEecC---CCcceeECCCCc
Confidence 4444 3445678899998866543332 3458899988522 11122221 112355888886
Q ss_pred EEEEEECCCCCCceEEEEECCCCC--CeEEeccC-CCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeeccc
Q 003878 372 VFTFLTNKDAPKYKIIRVDLKEPN--DWFEVIPE-AERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI 448 (789)
Q Consensus 372 ~l~~~tn~~~~~~~L~~~dl~~~~--~~~~l~~~-~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~ 448 (789)
.+++..+. ..|-++|+..-+ ..+..... ........+.++++++.++....++ .++++|.=+|..+..+..
T Consensus 154 ifA~~~~~----~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s--~~~~lDAf~G~~~~tfs~ 227 (311)
T KOG1446|consen 154 IFALANGS----ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS--FIYLLDAFDGTVKSTFSG 227 (311)
T ss_pred EEEEecCC----CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC--cEEEEEccCCcEeeeEee
Confidence 65543322 267777875421 22333222 3334567788888766666666554 688888767876555544
Q ss_pred C--CeeE-EEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 449 E--IGSV-NAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 449 ~--~~~v-~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
. .+.+ -...++||++.++-. ..-+++..|++++|.
T Consensus 228 ~~~~~~~~~~a~ftPds~Fvl~g----s~dg~i~vw~~~tg~ 265 (311)
T KOG1446|consen 228 YPNAGNLPLSATFTPDSKFVLSG----SDDGTIHVWNLETGK 265 (311)
T ss_pred ccCCCCcceeEEECCCCcEEEEe----cCCCcEEEEEcCCCc
Confidence 3 2211 234678999866533 345799999999985
No 189
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=98.33 E-value=1.3e-05 Score=81.08 Aligned_cols=349 Identities=14% Similarity=0.130 Sum_probs=187.5
Q ss_pred cCCCCcccCCCCHHHHHHHHHHHHHHHHHHcCC-----ccHHHHHHHHHhhhcCC-CCCCceE----eCCEEEEEEEcCC
Q 003878 32 VDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNC-----DVRDKLREKITKLFDSP-RYDAPFK----RGNKYFYFHNTGL 101 (789)
Q Consensus 32 ~D~y~wled~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~----~g~~~~~~~~~~~ 101 (789)
.||---|...+ | -.|+.-||-+.++|++.- .-.++-|..|.+.+..+ .+-+|.+ -|.-+=+..-.|.
T Consensus 100 TdpM~~lKQ~~-p--eRy~~lE~ll~R~YFDp~EaY~dssKEkrRa~IAQ~ls~EV~VVppSRLlaLlGQaLKWQqHQGL 176 (508)
T KOG0275|consen 100 TDPMIMLKQIQ-P--ERYIRLENLLNRSYFDPREAYGDSSKEKRRAVIAQALSGEVHVVPPSRLLALLGQALKWQQHQGL 176 (508)
T ss_pred cCceehhhccC-h--HHHHHHHHHhcccccChhhhcCcchHHHHHHHHHHHhcCceEEcChHHHHHHHHHHhhhHhhcCC
Confidence 46655555432 2 356666776666666543 22345555566555554 2333332 2433322222222
Q ss_pred CC---eeEEEEecCC--CCCceEEeccCCCCCC----CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceec
Q 003878 102 QP---QSVLYVQDSL--DAKAKVLLDPNTLSDD----GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA 172 (789)
Q Consensus 102 ~~---~~~~~~~~~~--~~~~~~l~d~~~~~~~----~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~ 172 (789)
-| +.-|++-... +.+++ .-|+.|+.. ....+....+||||+||+ +|+-..-|-|||-.+|+...
T Consensus 177 LPPGt~iDLFRGkAA~K~~~Ee--~~Pt~l~r~IKFg~KSh~EcA~FSPDgqyLv-----sgSvDGFiEVWny~~GKlrK 249 (508)
T KOG0275|consen 177 LPPGTTIDLFRGKAAMKDQEEE--RYPTQLARSIKFGQKSHVECARFSPDGQYLV-----SGSVDGFIEVWNYTTGKLRK 249 (508)
T ss_pred CCCCceeeeccchhhhhhhHhh--hchHHhhhheecccccchhheeeCCCCceEe-----eccccceeeeehhccchhhh
Confidence 22 2223432211 11111 112333321 122345678999999998 56666789999999997544
Q ss_pred ccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEE
Q 003878 173 DALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYS 252 (789)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~ 252 (789)
+--.....+ +++.|. ..--+.||-|+.-++-.
T Consensus 250 DLkYQAqd~-----------------------------------fMMmd~-------------aVlci~FSRDsEMlAsG 281 (508)
T KOG0275|consen 250 DLKYQAQDN-----------------------------------FMMMDD-------------AVLCISFSRDSEMLASG 281 (508)
T ss_pred hhhhhhhcc-----------------------------------eeeccc-------------ceEEEeecccHHHhhcc
Confidence 321111000 000000 12345566666555432
Q ss_pred EccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEE
Q 003878 253 RYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCD 332 (789)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d 332 (789)
. ..-+|.+|++.|++.-. -|+.. +...+..+.+|.|+..++-.+.+ ..+.+--
T Consensus 282 s-------------------qDGkIKvWri~tG~ClR--rFdrA-HtkGvt~l~FSrD~SqiLS~sfD-----~tvRiHG 334 (508)
T KOG0275|consen 282 S-------------------QDGKIKVWRIETGQCLR--RFDRA-HTKGVTCLSFSRDNSQILSASFD-----QTVRIHG 334 (508)
T ss_pred C-------------------cCCcEEEEEEecchHHH--Hhhhh-hccCeeEEEEccCcchhhccccc-----ceEEEec
Confidence 1 23357777777765422 23322 23446688999999999755432 3344444
Q ss_pred CCCCCCCcccccccCCCCccEeeecccc-ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeee
Q 003878 333 LSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLES 411 (789)
Q Consensus 333 ~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~ 411 (789)
+++|+ .++....... .....+++||.+++-.+ .++.+-+|+.++.+-..+.-|...+..+.+
T Consensus 335 lKSGK-------------~LKEfrGHsSyvn~a~ft~dG~~iisaS----sDgtvkvW~~KtteC~~Tfk~~~~d~~vns 397 (508)
T KOG0275|consen 335 LKSGK-------------CLKEFRGHSSYVNEATFTDDGHHIISAS----SDGTVKVWHGKTTECLSTFKPLGTDYPVNS 397 (508)
T ss_pred cccch-------------hHHHhcCccccccceEEcCCCCeEEEec----CCccEEEecCcchhhhhhccCCCCccccee
Confidence 55542 1222111110 11245889999877433 346688888887653333444444566777
Q ss_pred EEEecC--CEEEEEEEeCCeEEEEEEECCCCceeeecccC---CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 412 ATAVNL--NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE---IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 412 v~~~~~--~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~---~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
+.+.+. .++++--+.+ .++++++. |+.++..... .|..-....+|.|..++.... -..+|.++..+|
T Consensus 398 v~~~PKnpeh~iVCNrsn---tv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigE----D~vlYCF~~~sG 469 (508)
T KOG0275|consen 398 VILLPKNPEHFIVCNRSN---TVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGE----DGVLYCFSVLSG 469 (508)
T ss_pred EEEcCCCCceEEEEcCCC---eEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEcc----CcEEEEEEeecC
Confidence 777662 4566544433 79999997 8877777654 334434457888998886644 458899998888
Q ss_pred CceE
Q 003878 487 TPEM 490 (789)
Q Consensus 487 ~~~~ 490 (789)
+++.
T Consensus 470 ~LE~ 473 (508)
T KOG0275|consen 470 KLER 473 (508)
T ss_pred ceee
Confidence 7543
No 190
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=98.33 E-value=0.0015 Score=66.01 Aligned_cols=171 Identities=11% Similarity=0.038 Sum_probs=104.1
Q ss_pred ccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEec-CCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCcc
Q 003878 274 YHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE-DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPF 352 (789)
Q Consensus 274 ~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~ 352 (789)
..+.-+|++.+++ .+..|.+. ...+.+++++| |++..+-.. . ....+++|+..+ ...
T Consensus 165 D~TCalWDie~g~--~~~~f~GH--~gDV~slsl~p~~~ntFvSg~---c--D~~aklWD~R~~-------------~c~ 222 (343)
T KOG0286|consen 165 DMTCALWDIETGQ--QTQVFHGH--TGDVMSLSLSPSDGNTFVSGG---C--DKSAKLWDVRSG-------------QCV 222 (343)
T ss_pred CceEEEEEcccce--EEEEecCC--cccEEEEecCCCCCCeEEecc---c--ccceeeeeccCc-------------cee
Confidence 4457788998764 34556543 44567899999 888765433 3 233567788763 122
Q ss_pred Eeeec-cccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEE
Q 003878 353 VKLID-GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYV 431 (789)
Q Consensus 353 ~~l~~-~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~ 431 (789)
+.... +.+..-..|-|+|..|.- . ..+...-.+|+....+....-++.....+.+++++..++|++....+. .
T Consensus 223 qtF~ghesDINsv~ffP~G~afat--G--SDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~--~ 296 (343)
T KOG0286|consen 223 QTFEGHESDINSVRFFPSGDAFAT--G--SDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDF--T 296 (343)
T ss_pred EeecccccccceEEEccCCCeeee--c--CCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCC--c
Confidence 22221 122222336789987663 2 223444455666544222222333334567888887788888876665 6
Q ss_pred EEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCC
Q 003878 432 LQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLI 474 (789)
Q Consensus 432 L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~ 474 (789)
..+||.=.|+....|..+...|+.+..+|||- .+...|+..
T Consensus 297 c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~--av~TgSWDs 337 (343)
T KOG0286|consen 297 CNVWDTLKGERVGVLAGHENRVSCLGVSPDGM--AVATGSWDS 337 (343)
T ss_pred eeEeeccccceEEEeeccCCeeEEEEECCCCc--EEEecchhH
Confidence 78888654777677777777888899999985 455566654
No 191
>PRK07868 acyl-CoA synthetase; Validated
Probab=98.33 E-value=1.6e-05 Score=99.08 Aligned_cols=106 Identities=12% Similarity=0.099 Sum_probs=64.0
Q ss_pred CccEEEEEcCCCCccCCCCCCH--HHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHH----HHHHHHHH
Q 003878 537 SHPCLLYGYGGFNISVTPSFSV--SRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDF----ISASEYLI 610 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~~~~~~~--~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~----~~~~~~L~ 610 (789)
..|.||++||.......+...+ ....+|.++||.|+++|+. .... . .. . ...++.|. .++++.+.
T Consensus 66 ~~~plllvhg~~~~~~~~d~~~~~s~v~~L~~~g~~v~~~d~G-~~~~--~--~~---~-~~~~l~~~i~~l~~~l~~v~ 136 (994)
T PRK07868 66 VGPPVLMVHPMMMSADMWDVTRDDGAVGILHRAGLDPWVIDFG-SPDK--V--EG---G-MERNLADHVVALSEAIDTVK 136 (994)
T ss_pred CCCcEEEECCCCCCccceecCCcccHHHHHHHCCCEEEEEcCC-CCCh--h--Hc---C-ccCCHHHHHHHHHHHHHHHH
Confidence 4578999999766554444332 1245565589999999962 2111 0 00 0 12333333 33333333
Q ss_pred HcCCCCCCcEEEEeeChHHHHHHHHHHhC-CCceeEEEecCCccc
Q 003878 611 SAGYTQSRKLCIEGGSNGGLLVGACINQR-PDLFGCALAHVGVMD 654 (789)
Q Consensus 611 ~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-pd~f~a~v~~~p~~d 654 (789)
+.. .+++.++|+|+||.++..++..+ |++++.+|+.+..+|
T Consensus 137 ~~~---~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d 178 (994)
T PRK07868 137 DVT---GRDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVD 178 (994)
T ss_pred Hhh---CCceEEEEEChhHHHHHHHHHhcCCCccceEEEEecccc
Confidence 332 24799999999999998877644 568888877555444
No 192
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.32 E-value=0.0009 Score=73.24 Aligned_cols=218 Identities=13% Similarity=0.136 Sum_probs=112.9
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEE--EEe----cCC----CCeeEEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL--CWK----DPE----HPKYIFSGHV 307 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~--~~~----~~~----~~~~~~~~~~ 307 (789)
..++.+||++.|+...+.. ..+..+.+.....-... ++. .++ .......+.+
T Consensus 90 ~~i~~~~~g~~l~vany~~------------------g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~ 151 (345)
T PF10282_consen 90 CHIAVDPDGRFLYVANYGG------------------GSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVF 151 (345)
T ss_dssp EEEEECTTSSEEEEEETTT------------------TEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE
T ss_pred EEEEEecCCCEEEEEEccC------------------CeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEE
Confidence 4678899999998875532 23555666543211111 111 111 1122346789
Q ss_pred ecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEE
Q 003878 308 TEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKII 387 (789)
Q Consensus 308 SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~ 387 (789)
+|||+++++.. .+ ...|++++++.....+. ......+..+...+...++|||+.+|+..... ..|.
T Consensus 152 ~pdg~~v~v~d-lG---~D~v~~~~~~~~~~~l~-------~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s---~~v~ 217 (345)
T PF10282_consen 152 SPDGRFVYVPD-LG---ADRVYVYDIDDDTGKLT-------PVDSIKVPPGSGPRHLAFSPDGKYAYVVNELS---NTVS 217 (345)
T ss_dssp -TTSSEEEEEE-TT---TTEEEEEEE-TTS-TEE-------EEEEEECSTTSSEEEEEE-TTSSEEEEEETTT---TEEE
T ss_pred CCCCCEEEEEe-cC---CCEEEEEEEeCCCceEE-------EeeccccccCCCCcEEEEcCCcCEEEEecCCC---CcEE
Confidence 99999997653 22 35688888765310010 00011222344445667999999999876543 4555
Q ss_pred EEECC--CCC--CeE--EeccCCC--CceeeeEEEecCCE-EEEEEEeCCeEEEEEEEC--CCCceeeec---ccCCeeE
Q 003878 388 RVDLK--EPN--DWF--EVIPEAE--RDVLESATAVNLNQ-MIVSYLSDVKYVLQIRDL--KNGSLLHQL---PIEIGSV 453 (789)
Q Consensus 388 ~~dl~--~~~--~~~--~l~~~~~--~~~i~~v~~~~~~~-lv~~~~~~g~~~L~~~dl--~tG~~~~~l---~~~~~~v 453 (789)
.+++. ++. ..+ ..+|... .....++.++++++ ||++-+.. ..|.++++ ++|+. +.+ ......-
T Consensus 218 v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~--~sI~vf~~d~~~g~l-~~~~~~~~~G~~P 294 (345)
T PF10282_consen 218 VFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS--NSISVFDLDPATGTL-TLVQTVPTGGKFP 294 (345)
T ss_dssp EEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT--TEEEEEEECTTTTTE-EEEEEEEESSSSE
T ss_pred EEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccC--CEEEEEEEecCCCce-EEEEEEeCCCCCc
Confidence 55554 332 111 1222221 11356788887654 55544433 45666666 44543 332 2111124
Q ss_pred EEeecccCCcEEEEEEcCCCCCcEEEEEECCCCCceEEEe
Q 003878 454 NAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIF 493 (789)
Q Consensus 454 ~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~l 493 (789)
..+.++++++.++++-.. ..--.+|.+|.++|. ++..
T Consensus 295 r~~~~s~~g~~l~Va~~~-s~~v~vf~~d~~tG~--l~~~ 331 (345)
T PF10282_consen 295 RHFAFSPDGRYLYVANQD-SNTVSVFDIDPDTGK--LTPV 331 (345)
T ss_dssp EEEEE-TTSSEEEEEETT-TTEEEEEEEETTTTE--EEEE
T ss_pred cEEEEeCCCCEEEEEecC-CCeEEEEEEeCCCCc--EEEe
Confidence 567789999988876533 334566777878884 4443
No 193
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.31 E-value=0.00019 Score=76.43 Aligned_cols=225 Identities=8% Similarity=0.054 Sum_probs=140.4
Q ss_pred EEEeeeccccceeeeeeec------------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEEC
Q 003878 215 FYLFSLVKSTIYSFWSVVS------------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFL 282 (789)
Q Consensus 215 ~~~~~s~~~g~~~l~~~~~------------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l 282 (789)
.+|...+-+|+.+||+++. .+.....+++|+|...+++ +++..-+|.+++
T Consensus 226 plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~------------------s~rrky~ysyDl 287 (514)
T KOG2055|consen 226 PLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFT------------------SGRRKYLYSYDL 287 (514)
T ss_pred ceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEe------------------cccceEEEEeec
Confidence 5688999999999999988 4445678999999955555 234445888898
Q ss_pred CCCCCCcEE-EEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccc
Q 003878 283 GTKQSEDIL-CWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA 361 (789)
Q Consensus 283 g~~~~~~~~-~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~ 361 (789)
.+.....+- ++..+ ...+..+.+|||+++|++... ...|+++...++. ...-.++ .+ ..
T Consensus 288 e~ak~~k~~~~~g~e--~~~~e~FeVShd~~fia~~G~-----~G~I~lLhakT~e-----------li~s~Ki-eG-~v 347 (514)
T KOG2055|consen 288 ETAKVTKLKPPYGVE--EKSMERFEVSHDSNFIAIAGN-----NGHIHLLHAKTKE-----------LITSFKI-EG-VV 347 (514)
T ss_pred cccccccccCCCCcc--cchhheeEecCCCCeEEEccc-----CceEEeehhhhhh-----------hhheeee-cc-EE
Confidence 776543322 12221 234567889999999998764 4568888877642 0000011 11 11
Q ss_pred eeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCC--
Q 003878 362 QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKN-- 439 (789)
Q Consensus 362 ~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~t-- 439 (789)
.-..|+.||+.|+... ..+.|+.+|+.........+-++ ...-.++..+.++.+++.+++.|.-.|| |.++
T Consensus 348 ~~~~fsSdsk~l~~~~----~~GeV~v~nl~~~~~~~rf~D~G-~v~gts~~~S~ng~ylA~GS~~GiVNIY--d~~s~~ 420 (514)
T KOG2055|consen 348 SDFTFSSDSKELLASG----GTGEVYVWNLRQNSCLHRFVDDG-SVHGTSLCISLNGSYLATGSDSGIVNIY--DGNSCF 420 (514)
T ss_pred eeEEEecCCcEEEEEc----CCceEEEEecCCcceEEEEeecC-ccceeeeeecCCCceEEeccCcceEEEe--ccchhh
Confidence 1234788998888643 34689999998875223333222 2333456666666788888888854444 4331
Q ss_pred -Cceeeeccc---CCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 440 -GSLLHQLPI---EIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 440 -G~~~~~l~~---~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
+..++.+.. -...|+.+.+++|+..+++ .|-..+..+.+..+.+.
T Consensus 421 ~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAi--aS~~~knalrLVHvPS~ 469 (514)
T KOG2055|consen 421 ASTNPKPIKTVDNLTTAITSLQFNHDAQILAI--ASRVKKNALRLVHVPSC 469 (514)
T ss_pred ccCCCCchhhhhhhheeeeeeeeCcchhhhhh--hhhccccceEEEeccce
Confidence 111133321 1446778899999886665 35567788888877655
No 194
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.31 E-value=8.7e-05 Score=75.72 Aligned_cols=128 Identities=19% Similarity=0.273 Sum_probs=80.3
Q ss_pred EEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceec-----ccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 137 VSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA-----DALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 137 ~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
.++||+|+|||-.. ++.+.|.|.+|=+..+ +.+..+ .|. +
T Consensus 14 c~fSp~g~yiAs~~------~yrlviRd~~tlq~~qlf~cldki~yi---------------------------eW~--a 58 (447)
T KOG4497|consen 14 CSFSPCGNYIASLS------RYRLVIRDSETLQLHQLFLCLDKIVYI---------------------------EWK--A 58 (447)
T ss_pred eeECCCCCeeeeee------eeEEEEeccchhhHHHHHHHHHHhhhe---------------------------eee--c
Confidence 46999999999655 4689999988865432 111111 000 1
Q ss_pred eeeEEEeeeccccceeeeeeec----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEE
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVS----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHF 281 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 281 (789)
-+-.++-..-.++.-|+|.+.- +-...+..|||||+.|.-+. ...-+|-+|.
T Consensus 59 ds~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~ts------------------eF~lriTVWS 120 (447)
T KOG4497|consen 59 DSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTS------------------EFDLRITVWS 120 (447)
T ss_pred cceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeee------------------cceeEEEEEE
Confidence 1123344445677789998765 22236789999999998762 3345677788
Q ss_pred CCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCC
Q 003878 282 LGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENC 322 (789)
Q Consensus 282 lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 322 (789)
+-+... .....+.+. .-+.++.|||++.++.+.+.+
T Consensus 121 L~t~~~---~~~~~pK~~--~kg~~f~~dg~f~ai~sRrDC 156 (447)
T KOG4497|consen 121 LNTQKG---YLLPHPKTN--VKGYAFHPDGQFCAILSRRDC 156 (447)
T ss_pred ecccee---EEecccccC--ceeEEECCCCceeeeeecccH
Confidence 776432 222333222 246889999999999876543
No 195
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.31 E-value=0.00017 Score=74.65 Aligned_cols=198 Identities=16% Similarity=0.136 Sum_probs=123.3
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
...+.|+||++.|++... ...++++++.+... ...... +...+..+.|+|++++++.
T Consensus 12 i~~~~~~~~~~~l~~~~~-------------------~g~i~i~~~~~~~~--~~~~~~--~~~~i~~~~~~~~~~~l~~ 68 (289)
T cd00200 12 VTCVAFSPDGKLLATGSG-------------------DGTIKVWDLETGEL--LRTLKG--HTGPVRDVAASADGTYLAS 68 (289)
T ss_pred EEEEEEcCCCCEEEEeec-------------------CcEEEEEEeeCCCc--EEEEec--CCcceeEEEECCCCCEEEE
Confidence 578999999998887643 23577888765432 122222 2223457899999988877
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc-cceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF-DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
... ...++++++.++. ....+.... ......|+++++.++ .+. .++.|..+++.+++
T Consensus 69 ~~~-----~~~i~i~~~~~~~-------------~~~~~~~~~~~i~~~~~~~~~~~~~-~~~---~~~~i~~~~~~~~~ 126 (289)
T cd00200 69 GSS-----DKTIRLWDLETGE-------------CVRTLTGHTSYVSSVAFSPDGRILS-SSS---RDKTIKVWDVETGK 126 (289)
T ss_pred EcC-----CCeEEEEEcCccc-------------ceEEEeccCCcEEEEEEcCCCCEEE-Eec---CCCeEEEEECCCcE
Confidence 653 3558888987631 111221111 112234777755444 333 24678899987654
Q ss_pred CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCC
Q 003878 396 DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIP 475 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P 475 (789)
....+..+ ...+..+.+.+++.+++....++ .|++||+.+++....+..+...+..+.++++++.+++... .
T Consensus 127 ~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~ 198 (289)
T cd00200 127 CLTTLRGH--TDWVNSVAFSPDGTFVASSSQDG--TIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----D 198 (289)
T ss_pred EEEEeccC--CCcEEEEEEcCcCCEEEEEcCCC--cEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----C
Confidence 22233222 24577888888556666665455 6889999877665555544556777888898877766543 5
Q ss_pred cEEEEEECCCCC
Q 003878 476 GIVYQCNLKTET 487 (789)
Q Consensus 476 ~~ly~~dl~tg~ 487 (789)
+.+..||+.+++
T Consensus 199 ~~i~i~d~~~~~ 210 (289)
T cd00200 199 GTIKLWDLSTGK 210 (289)
T ss_pred CcEEEEECCCCc
Confidence 688999987764
No 196
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.30 E-value=0.0021 Score=67.25 Aligned_cols=173 Identities=12% Similarity=0.136 Sum_probs=97.2
Q ss_pred EEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCC
Q 003878 304 SGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPK 383 (789)
Q Consensus 304 ~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~ 383 (789)
...++|||++|+...- + ..+|++++++.|+ +. ......+..+.+.+.-.|.|+|+..|+++..+ ..
T Consensus 149 ~a~~tP~~~~l~v~DL-G---~Dri~~y~~~dg~--L~-------~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~-st 214 (346)
T COG2706 149 SANFTPDGRYLVVPDL-G---TDRIFLYDLDDGK--LT-------PADPAEVKPGAGPRHIVFHPNGKYAYLVNELN-ST 214 (346)
T ss_pred eeeeCCCCCEEEEeec-C---CceEEEEEcccCc--cc-------cccccccCCCCCcceEEEcCCCcEEEEEeccC-CE
Confidence 4678999999986542 2 4668888888653 10 01111223455556677999999988887764 23
Q ss_pred ceEEEEECCCCC--CeEEe--ccCCC--CceeeeEEEecCCEEEEEEEeCC-eEEEEEEECCCCceeeeccc-C-Cee-E
Q 003878 384 YKIIRVDLKEPN--DWFEV--IPEAE--RDVLESATAVNLNQMIVSYLSDV-KYVLQIRDLKNGSLLHQLPI-E-IGS-V 453 (789)
Q Consensus 384 ~~L~~~dl~~~~--~~~~l--~~~~~--~~~i~~v~~~~~~~lv~~~~~~g-~~~L~~~dl~tG~~~~~l~~-~-~~~-v 453 (789)
-.++.++-..++ ..+.+ +|.+- .....++.+++++++++...+.. .-.++.++..+|+. +.+.. + .+. -
T Consensus 215 V~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L-~~~~~~~teg~~P 293 (346)
T COG2706 215 VDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKL-ELVGITPTEGQFP 293 (346)
T ss_pred EEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEE-EEEEEeccCCcCC
Confidence 334444433343 12221 23221 13346688888666554444332 22445556665543 32221 1 222 2
Q ss_pred EEeecccCCcEEEEEEcCCCCCcEEEEEECCCCCceEEEee
Q 003878 454 NAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFR 494 (789)
Q Consensus 454 ~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~l~ 494 (789)
+.+.++++++.|+.+-+.-. --.+|+.|.+||. ++++.
T Consensus 294 R~F~i~~~g~~Liaa~q~sd-~i~vf~~d~~TG~--L~~~~ 331 (346)
T COG2706 294 RDFNINPSGRFLIAANQKSD-NITVFERDKETGR--LTLLG 331 (346)
T ss_pred ccceeCCCCCEEEEEccCCC-cEEEEEEcCCCce--EEecc
Confidence 45667788887776654433 3788999999994 55544
No 197
>PTZ00421 coronin; Provisional
Probab=98.25 E-value=0.00091 Score=76.25 Aligned_cols=205 Identities=10% Similarity=0.031 Sum_probs=114.7
Q ss_pred cceEEEEe-CCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCC-----CcEEEEecCCCCeeEEEEEEecC
Q 003878 237 FSSIAWTH-DSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQS-----EDILCWKDPEHPKYIFSGHVTED 310 (789)
Q Consensus 237 ~~~~~wsp-Dg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~-----~~~~~~~~~~~~~~~~~~~~SpD 310 (789)
+..++|+| |++.|+.... ...|.+|++.+... +.+..+.. +...+..+.|+|+
T Consensus 78 V~~v~fsP~d~~~LaSgS~-------------------DgtIkIWdi~~~~~~~~~~~~l~~L~g--H~~~V~~l~f~P~ 136 (493)
T PTZ00421 78 IIDVAFNPFDPQKLFTASE-------------------DGTIMGWGIPEEGLTQNISDPIVHLQG--HTKKVGIVSFHPS 136 (493)
T ss_pred EEEEEEcCCCCCEEEEEeC-------------------CCEEEEEecCCCccccccCcceEEecC--CCCcEEEEEeCcC
Confidence 57899999 8877765433 23588888865421 12223332 3344667899999
Q ss_pred CcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee-EEEecCCCEEEEEECCCCCCceEEEE
Q 003878 311 GQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRV 389 (789)
Q Consensus 311 G~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dG~~l~~~tn~~~~~~~L~~~ 389 (789)
+..+++++.. ...|.++|+.++. ....+....+... ..|+++|+.|+..+ .+..|..+
T Consensus 137 ~~~iLaSgs~----DgtVrIWDl~tg~-------------~~~~l~~h~~~V~sla~spdG~lLatgs----~Dg~IrIw 195 (493)
T PTZ00421 137 AMNVLASAGA----DMVVNVWDVERGK-------------AVEVIKCHSDQITSLEWNLDGSLLCTTS----KDKKLNII 195 (493)
T ss_pred CCCEEEEEeC----CCEEEEEECCCCe-------------EEEEEcCCCCceEEEEEECCCCEEEEec----CCCEEEEE
Confidence 7644444432 3558899998742 1222222222222 34899998766432 34678899
Q ss_pred ECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEE-e-CCeEEEEEEECCCCce-eeecccC-CeeEEEeecccCCcEE
Q 003878 390 DLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYL-S-DVKYVLQIRDLKNGSL-LHQLPIE-IGSVNAISARREDSVV 465 (789)
Q Consensus 390 dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~-~-~g~~~L~~~dl~tG~~-~~~l~~~-~~~v~~~s~s~d~~~l 465 (789)
|+.+++....+..+.. .....+.|.+++..+++.. . .....|.+||+.+... ...+... ...+..+.++++++.+
T Consensus 196 D~rsg~~v~tl~~H~~-~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L 274 (493)
T PTZ00421 196 DPRDGTIVSSVEAHAS-AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLL 274 (493)
T ss_pred ECCCCcEEEEEecCCC-CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEE
Confidence 9988763344444432 2233455665433333322 1 1224799999975432 2222222 2223344567888866
Q ss_pred EEEEcCCCCCcEEEEEECCCCC
Q 003878 466 FISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 466 ~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
++... .-..++.||+.+++
T Consensus 275 ~lggk---gDg~Iriwdl~~~~ 293 (493)
T PTZ00421 275 YIGSK---GEGNIRCFELMNER 293 (493)
T ss_pred EEEEe---CCCeEEEEEeeCCc
Confidence 65432 24578888888774
No 198
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.25 E-value=1.6e-05 Score=82.68 Aligned_cols=227 Identities=14% Similarity=0.074 Sum_probs=123.5
Q ss_pred eEEEEEEEe-cCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcch
Q 003878 520 TKIPMFIVS-KKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNC 598 (789)
Q Consensus 520 ~~i~~~l~~-p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~ 598 (789)
+++..-+++ ..+ -.+.|.++.+||-.|+..+ |....-.+-...|--+..+|.|-.|..... ........
T Consensus 36 ~~l~y~~~~~~~~---~~~~Pp~i~lHGl~GS~~N--w~sv~k~Ls~~l~~~v~~vd~RnHG~Sp~~-----~~h~~~~m 105 (315)
T KOG2382|consen 36 VRLAYDSVYSSEN---LERAPPAIILHGLLGSKEN--WRSVAKNLSRKLGRDVYAVDVRNHGSSPKI-----TVHNYEAM 105 (315)
T ss_pred cccceeeeecccc---cCCCCceEEecccccCCCC--HHHHHHHhcccccCceEEEecccCCCCccc-----cccCHHHH
Confidence 556655553 333 3678999999999887643 333223444456678999999987754321 11222233
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEeeChHH-HHHHHHHHhCCCceeEEEe-c-CCc-ccc--------cccc---ccc-
Q 003878 599 FDDFISASEYLISAGYTQSRKLCIEGGSNGG-LLVGACINQRPDLFGCALA-H-VGV-MDM--------LRYH---KFT- 662 (789)
Q Consensus 599 ~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG-~l~~~~~~~~pd~f~a~v~-~-~p~-~d~--------~~~~---~~~- 662 (789)
-+|+...++..... +--.++.+.|||||| -++++.....|++..-+|+ . .|- +.- ...+ ...
T Consensus 106 a~dv~~Fi~~v~~~--~~~~~~~l~GHsmGG~~~~m~~t~~~p~~~~rliv~D~sP~~~~~~~~e~~e~i~~m~~~d~~~ 183 (315)
T KOG2382|consen 106 AEDVKLFIDGVGGS--TRLDPVVLLGHSMGGVKVAMAETLKKPDLIERLIVEDISPGGVGRSYGEYRELIKAMIQLDLSI 183 (315)
T ss_pred HHHHHHHHHHcccc--cccCCceecccCcchHHHHHHHHHhcCcccceeEEEecCCccCCcccchHHHHHHHHHhccccc
Confidence 34444444444322 234589999999999 6666666677886544443 2 331 100 0000 000
Q ss_pred ---CCcc-----------------chh------------hc-CCC-CcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCe
Q 003878 663 ---IGHA-----------------WVS------------DF-GCS-EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPS 708 (789)
Q Consensus 663 ---~~~~-----------------~~~------------e~-g~p-~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp 708 (789)
.+.. |.. .| ++. ...+.+..+...++-..+... +...|
T Consensus 184 ~~~~~rke~~~~l~~~~~d~~~~~fi~~nl~~~~~~~s~~w~~nl~~i~~~~~~~~~~s~~~~l~~~--------~~~~p 255 (315)
T KOG2382|consen 184 GVSRGRKEALKSLIEVGFDNLVRQFILTNLKKSPSDGSFLWRVNLDSIASLLDEYEILSYWADLEDG--------PYTGP 255 (315)
T ss_pred cccccHHHHHHHHHHHhcchHHHHHHHHhcCcCCCCCceEEEeCHHHHHHHHHHHHhhccccccccc--------ccccc
Confidence 0000 000 01 111 111222222222222222111 23579
Q ss_pred EEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHH
Q 003878 709 TLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKM 782 (789)
Q Consensus 709 ~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 782 (789)
+|+++|.++..|+..+-..+.... ..++++..+++||+......+ +....+..|+...
T Consensus 256 vlfi~g~~S~fv~~~~~~~~~~~f--------------p~~e~~~ld~aGHwVh~E~P~--~~~~~i~~Fl~~~ 313 (315)
T KOG2382|consen 256 VLFIKGLQSKFVPDEHYPRMEKIF--------------PNVEVHELDEAGHWVHLEKPE--EFIESISEFLEEP 313 (315)
T ss_pred eeEEecCCCCCcChhHHHHHHHhc--------------cchheeecccCCceeecCCHH--HHHHHHHHHhccc
Confidence 999999999999977644433322 236899999999998766554 5666677777543
No 199
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=98.24 E-value=0.0012 Score=73.74 Aligned_cols=203 Identities=11% Similarity=0.129 Sum_probs=111.7
Q ss_pred eEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec----cccceeEEEecCCCEEEEE
Q 003878 301 YIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID----GFDAQYEVIANDDTVFTFL 376 (789)
Q Consensus 301 ~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~s~dG~~l~~~ 376 (789)
.+...+.||||++|++.+-. ...||.+..+. . .....+.. -.++..-.++-|+..+++.
T Consensus 384 nIs~~aiSPdg~~Ia~st~~----~~~iy~L~~~~-~------------vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~ 446 (691)
T KOG2048|consen 384 NISCAAISPDGNLIAISTVS----RTKIYRLQPDP-N------------VKVINVDDVPLALLDASAISFTIDKNKLFLV 446 (691)
T ss_pred ceeeeccCCCCCEEEEeecc----ceEEEEeccCc-c------------eeEEEeccchhhhccceeeEEEecCceEEEE
Confidence 35567899999999998743 34566665432 1 00111110 0111223367788777777
Q ss_pred ECCCCCCceEEEEECCCCC--CeEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECCCCceeeecc-cCCee
Q 003878 377 TNKDAPKYKIIRVDLKEPN--DWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLP-IEIGS 452 (789)
Q Consensus 377 tn~~~~~~~L~~~dl~~~~--~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~-~~~~~ 452 (789)
+. ..+.|..++++++. ....+.+......+..+..+++ ++++++.. ...|++|++++++. +.+. .....
T Consensus 447 s~---~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t---~g~I~v~nl~~~~~-~~l~~rln~~ 519 (691)
T KOG2048|consen 447 SK---NIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIST---RGQIFVYNLETLES-HLLKVRLNID 519 (691)
T ss_pred ec---ccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEec---cceEEEEEccccee-ecchhccCcc
Confidence 63 23678888887764 2333334333345777777774 55665553 34799999997665 4443 22344
Q ss_pred EEEeecc-cCCcEEEEEEcCCCCCcEEEEEECCCCCceEEEeeeccCCCCCCCCCcEEEEEEecCCCceEEEEEEEecCC
Q 003878 453 VNAISAR-REDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKN 531 (789)
Q Consensus 453 v~~~s~s-~d~~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~dg~~~i~~~l~~p~~ 531 (789)
++.+++. ++-+.+.+.+++ .++|.||+.... .+.+... +...+. ..+....+ .+++..+-|
T Consensus 520 vTa~~~~~~~~~~lvvats~----nQv~efdi~~~~--l~~ws~~-----nt~nlp---k~~~~l~~--~~~gisfd~-- 581 (691)
T KOG2048|consen 520 VTAAAFSPFVRNRLVVATSN----NQVFEFDIEARN--LTRWSKN-----NTRNLP---KEPKTLIP--GIPGISFDP-- 581 (691)
T ss_pred eeeeeccccccCcEEEEecC----CeEEEEecchhh--hhhhhhc-----cccccc---cChhhcCC--CCceEEeCC--
Confidence 5555666 345667766544 589999985442 2222111 111111 11222232 355555543
Q ss_pred CCCCCCccEEEEEcCCCCc
Q 003878 532 IKLDGSHPCLLYGYGGFNI 550 (789)
Q Consensus 532 ~~~~~~~P~ll~~hGg~~~ 550 (789)
++|..+.+|++...
T Consensus 582 -----~n~s~~~~~~a~w~ 595 (691)
T KOG2048|consen 582 -----KNSSRFIVYDAHWS 595 (691)
T ss_pred -----CCccEEEEEcCcEE
Confidence 46788888987654
No 200
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.24 E-value=5.5e-05 Score=87.65 Aligned_cols=172 Identities=12% Similarity=0.097 Sum_probs=99.9
Q ss_pred EEEeEEeCCCCcEEEEEEec---CCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 133 ALIKVSVSEDAKYLAYALSY---SGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~---~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
.+.++++||||+++||.... .++...+||+.+..+ ...+. ....
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~~~l-t~g~------------------------------- 397 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VAVQV-LEGH------------------------------- 397 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cceee-ecCC-------------------------------
Confidence 46789999999999999852 123467999999733 22221 1111
Q ss_pred cceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCc
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED 289 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~ 289 (789)
....+.|||||+.|+|.....+- ..........+++...+..+....
T Consensus 398 --------------------------~~t~PsWspDG~~lw~v~dg~~~-------~~v~~~~~~gql~~~~vd~ge~~~ 444 (591)
T PRK13616 398 --------------------------SLTRPSWSLDADAVWVVVDGNTV-------VRVIRDPATGQLARTPVDASAVAS 444 (591)
T ss_pred --------------------------CCCCceECCCCCceEEEecCcce-------EEEeccCCCceEEEEeccCchhhh
Confidence 24789999999999998643110 000001123467777775543221
Q ss_pred EEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEE---EECCCCCCCcccccccCCCCccEeeeccccc--eeE
Q 003878 290 ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYY---CDLSALPEGLEGFKKRDGLLPFVKLIDGFDA--QYE 364 (789)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~---~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--~~~ 364 (789)
.. +..+.++.|||||++|++... .+||+ ....+|...+ .....+...... ...
T Consensus 445 ----~~---~g~Issl~wSpDG~RiA~i~~------g~v~Va~Vvr~~~G~~~l---------~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 445 ----RV---PGPISELQLSRDGVRAAMIIG------GKVYLAVVEQTEDGQYAL---------TNPREVGPGLGDTAVSL 502 (591)
T ss_pred ----cc---CCCcCeEEECCCCCEEEEEEC------CEEEEEEEEeCCCCceee---------cccEEeecccCCccccc
Confidence 11 112567899999999999872 35777 4434432110 112223332221 223
Q ss_pred EEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 365 VIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 365 ~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
.|..++. |++.+.. .+..++.+++++..
T Consensus 503 ~W~~~~~-L~V~~~~--~~~~v~~v~vDG~~ 530 (591)
T PRK13616 503 DWRTGDS-LVVGRSD--PEHPVWYVNLDGSN 530 (591)
T ss_pred eEecCCE-EEEEecC--CCCceEEEecCCcc
Confidence 4887665 6666553 45679999998764
No 201
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=98.24 E-value=2.6e-05 Score=88.01 Aligned_cols=195 Identities=11% Similarity=0.043 Sum_probs=122.0
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccce
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIF 212 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 212 (789)
.|-+.++|||-++|+ +.+|..++++|.+.|...+..= .
T Consensus 453 PVyg~sFsPd~rfLl-----ScSED~svRLWsl~t~s~~V~y-~------------------------------------ 490 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLL-----SCSEDSSVRLWSLDTWSCLVIY-K------------------------------------ 490 (707)
T ss_pred ceeeeeeccccccee-----eccCCcceeeeecccceeEEEe-c------------------------------------
Confidence 467888999999997 6777889999999987543210 0
Q ss_pred eeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEE
Q 003878 213 FFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILC 292 (789)
Q Consensus 213 ~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~ 292 (789)
...+ .+..+.|+|-|-+|+-... ..+..+|.... .....+
T Consensus 491 ----------GH~~---------PVwdV~F~P~GyYFatas~-------------------D~tArLWs~d~--~~PlRi 530 (707)
T KOG0263|consen 491 ----------GHLA---------PVWDVQFAPRGYYFATASH-------------------DQTARLWSTDH--NKPLRI 530 (707)
T ss_pred ----------CCCc---------ceeeEEecCCceEEEecCC-------------------Cceeeeeeccc--CCchhh
Confidence 0111 2345668887644442211 11223333222 122334
Q ss_pred EecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee--EEEecCC
Q 003878 293 WKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY--EVIANDD 370 (789)
Q Consensus 293 ~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~s~dG 370 (789)
+..+-.+ +.-+.+.|++.|++-.+. ...+.+||+.+|. .++++.+..... ..+||+|
T Consensus 531 faghlsD--V~cv~FHPNs~Y~aTGSs-----D~tVRlWDv~~G~--------------~VRiF~GH~~~V~al~~Sp~G 589 (707)
T KOG0263|consen 531 FAGHLSD--VDCVSFHPNSNYVATGSS-----DRTVRLWDVSTGN--------------SVRIFTGHKGPVTALAFSPCG 589 (707)
T ss_pred hcccccc--cceEEECCcccccccCCC-----CceEEEEEcCCCc--------------EEEEecCCCCceEEEEEcCCC
Confidence 4443322 234789999999985533 3457888988752 234444322222 3489999
Q ss_pred CEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECC
Q 003878 371 TVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLK 438 (789)
Q Consensus 371 ~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~ 438 (789)
++|.- ++..+.|..||+.++.....+..|. ..+.+++++.++.++++...|. .|.+||+.
T Consensus 590 r~LaS----g~ed~~I~iWDl~~~~~v~~l~~Ht--~ti~SlsFS~dg~vLasgg~Dn--sV~lWD~~ 649 (707)
T KOG0263|consen 590 RYLAS----GDEDGLIKIWDLANGSLVKQLKGHT--GTIYSLSFSRDGNVLASGGADN--SVRLWDLT 649 (707)
T ss_pred ceEee----cccCCcEEEEEcCCCcchhhhhccc--CceeEEEEecCCCEEEecCCCC--eEEEEEch
Confidence 98772 3456889999999887455566663 6788999998777777666554 78889985
No 202
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.24 E-value=0.0004 Score=78.14 Aligned_cols=270 Identities=18% Similarity=0.168 Sum_probs=156.3
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
+...+.++.+|.|...++ +|+ ...|.+|+..|.+.+. +++.. | -.-...+|..
T Consensus 372 HR~dVRsl~vS~d~~~~~-----Sga-~~SikiWn~~t~kciR-Ti~~~---y----------~l~~~Fvpgd------- 424 (888)
T KOG0306|consen 372 HRSDVRSLCVSSDSILLA-----SGA-GESIKIWNRDTLKCIR-TITCG---Y----------ILASKFVPGD------- 424 (888)
T ss_pred chhheeEEEeecCceeee-----ecC-CCcEEEEEccCcceeE-Eeccc---c----------EEEEEecCCC-------
Confidence 346688999999987776 221 1368899999886543 22211 0 0011223333
Q ss_pred cceeeEEEeeeccccceeeeeeec----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEE
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVS----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYY 279 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (789)
++..++-++|-.|++.+.. .-...+++-+||+++++-...+. .|..
T Consensus 425 -----~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDk-------------------tVkf 480 (888)
T KOG0306|consen 425 -----RYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADK-------------------TVKF 480 (888)
T ss_pred -----ceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCc-------------------EEEE
Confidence 3556667888777777655 11135677889999998665443 2222
Q ss_pred EEC-------CCCCC----CcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCC
Q 003878 280 HFL-------GTKQS----EDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDG 348 (789)
Q Consensus 280 ~~l-------g~~~~----~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~ 348 (789)
|+. |+... +...+.+.++ .+..+.+||||++|++..-+. +-.||.+|.=.
T Consensus 481 Wdf~l~~~~~gt~~k~lsl~~~rtLel~d---dvL~v~~Spdgk~LaVsLLdn---TVkVyflDtlK------------- 541 (888)
T KOG0306|consen 481 WDFKLVVSVPGTQKKVLSLKHTRTLELED---DVLCVSVSPDGKLLAVSLLDN---TVKVYFLDTLK------------- 541 (888)
T ss_pred EeEEEEeccCcccceeeeeccceEEeccc---cEEEEEEcCCCcEEEEEeccC---eEEEEEeccee-------------
Confidence 221 11100 0111223333 256789999999999887543 35566655321
Q ss_pred CCccEeeeccccce-eEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeC
Q 003878 349 LLPFVKLIDGFDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSD 427 (789)
Q Consensus 349 ~~~~~~l~~~~~~~-~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~ 427 (789)
-...+...--+. --.+|||++.++ +...+ .+.+++-+|..... +-++.|. ..+..+.+.|..+++++...+
T Consensus 542 --FflsLYGHkLPV~smDIS~DSkliv-TgSAD-KnVKiWGLdFGDCH--KS~fAHd--DSvm~V~F~P~~~~FFt~gKD 613 (888)
T KOG0306|consen 542 --FFLSLYGHKLPVLSMDISPDSKLIV-TGSAD-KNVKIWGLDFGDCH--KSFFAHD--DSVMSVQFLPKTHLFFTCGKD 613 (888)
T ss_pred --eeeeecccccceeEEeccCCcCeEE-eccCC-CceEEeccccchhh--hhhhccc--CceeEEEEcccceeEEEecCc
Confidence 022222211111 123789887654 33332 45667666664433 5667776 456778888878899999888
Q ss_pred CeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEEC
Q 003878 428 VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNL 483 (789)
Q Consensus 428 g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl 483 (789)
+ .+..||-+.=+.++.+..+...+..++.+|+|+.++ +. ..-..+..|..
T Consensus 614 ~--kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vv-s~---shD~sIRlwE~ 663 (888)
T KOG0306|consen 614 G--KVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVV-SS---SHDKSIRLWER 663 (888)
T ss_pred c--eEEeechhhhhhheeeccchheeeeeEEcCCCCeEE-ec---cCCceeEeeec
Confidence 7 788898553334455555566777788889988544 32 23345666654
No 203
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=98.23 E-value=1.8e-05 Score=80.61 Aligned_cols=112 Identities=22% Similarity=0.236 Sum_probs=69.1
Q ss_pred CCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCC--------------CChhHHhcccc--cCC---
Q 003878 535 DGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGE--------------YGEEWHKGGAL--AKK--- 595 (789)
Q Consensus 535 ~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~--------------~g~~~~~~~~~--~~~--- 595 (789)
++++|++|+.||-.++ ...|+..+..+.. +||+|+++..|-.+. +-.+|..--.. +.+
T Consensus 115 ~~k~PvvvFSHGLggs--Rt~YSa~c~~LAS-hG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ir~v~~~ekef~ 191 (399)
T KOG3847|consen 115 NDKYPVVVFSHGLGGS--RTLYSAYCTSLAS-HGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIKIRLVEANEKEFH 191 (399)
T ss_pred CCCccEEEEecccccc--hhhHHHHhhhHhh-CceEEEEeecccCcceeEEEecccccCCcccccceEeeeeccCceeEE
Confidence 6899999999997654 3345555555554 999999999885432 22233322111 111
Q ss_pred -cch-----HHHHHHHHHHHHH---------------------cCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEe
Q 003878 596 -QNC-----FDDFISASEYLIS---------------------AGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALA 648 (789)
Q Consensus 596 -~~~-----~~D~~~~~~~L~~---------------------~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~ 648 (789)
+|. ...+..|++-|.+ ++-+|.++++|+|||.||..+.+....+ ..|+++|+
T Consensus 192 irNeqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~ss~~-t~FrcaI~ 270 (399)
T KOG3847|consen 192 IRNEQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASSSSH-TDFRCAIA 270 (399)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhhccc-cceeeeee
Confidence 111 1223333333221 1335778999999999999998888875 46898886
Q ss_pred cC
Q 003878 649 HV 650 (789)
Q Consensus 649 ~~ 650 (789)
.-
T Consensus 271 lD 272 (399)
T KOG3847|consen 271 LD 272 (399)
T ss_pred ee
Confidence 43
No 204
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=98.23 E-value=6.1e-06 Score=82.31 Aligned_cols=138 Identities=19% Similarity=0.172 Sum_probs=96.8
Q ss_pred CCCCCCcEEEEEEe-cC--CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeec
Q 003878 501 FDRSEFHVHQVFVP-SK--DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIR 577 (789)
Q Consensus 501 ~~~~~~~~~~~~~~-s~--dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~R 577 (789)
|....+.++.+.+. +. ..+-..|+.|+.|.. .|.+|+|++.||-.-. ..|....++.++..||+|++++.-
T Consensus 9 F~~G~~~~~~~~Vd~s~~~~~spPkpLlI~tP~~---~G~yPVilF~HG~~l~---ns~Ys~lL~HIASHGfIVVAPQl~ 82 (307)
T PF07224_consen 9 FETGKYKTKLFNVDTSSNSSPSPPKPLLIVTPSE---AGTYPVILFLHGFNLY---NSFYSQLLAHIASHGFIVVAPQLY 82 (307)
T ss_pred eecCCceeEEEeecCCCCCCCCCCCCeEEecCCc---CCCccEEEEeechhhh---hHHHHHHHHHHhhcCeEEEechhh
Confidence 45555666665552 11 111467889999986 5899999999995432 344455677888899999999975
Q ss_pred CCCCCChhHHhcccccCCcchHHHHHHHHHHHHHc--C------CCCCCcEEEEeeChHHHHHHHHHHhC-CC-ceeEEE
Q 003878 578 GGGEYGEEWHKGGALAKKQNCFDDFISASEYLISA--G------YTQSRKLCIEGGSNGGLLVGACINQR-PD-LFGCAL 647 (789)
Q Consensus 578 G~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~--~------~~d~~~i~i~G~S~GG~l~~~~~~~~-pd-~f~a~v 647 (789)
... .......+++..++++||-+. . -.+.+++++.|||-||-.+.++|..+ .+ .|.|.|
T Consensus 83 ~~~-----------~p~~~~Ei~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLI 151 (307)
T PF07224_consen 83 TLF-----------PPDGQDEIKSAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALI 151 (307)
T ss_pred ccc-----------CCCchHHHHHHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhhee
Confidence 321 134456678888999998754 1 23668999999999999999988865 22 377777
Q ss_pred ecCCcccc
Q 003878 648 AHVGVMDM 655 (789)
Q Consensus 648 ~~~p~~d~ 655 (789)
..-|+--+
T Consensus 152 GiDPV~G~ 159 (307)
T PF07224_consen 152 GIDPVAGT 159 (307)
T ss_pred cccccCCC
Confidence 77776543
No 205
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=98.22 E-value=2.4e-06 Score=81.39 Aligned_cols=205 Identities=13% Similarity=0.129 Sum_probs=122.5
Q ss_pred EEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCC---cchHHHHHHHHHHHHHcCCCC
Q 003878 540 CLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK---QNCFDDFISASEYLISAGYTQ 616 (789)
Q Consensus 540 ~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~---~~~~~D~~~~~~~L~~~~~~d 616 (789)
.||.+-|.-|+ ....|.+...++....-+.++..|.+|-|..- ..+.+ +.-.+|..+|++-+... +
T Consensus 44 ~iLlipGalGs-~~tDf~pql~~l~k~l~~TivawDPpGYG~Sr-------PP~Rkf~~~ff~~Da~~avdLM~aL---k 112 (277)
T KOG2984|consen 44 YILLIPGALGS-YKTDFPPQLLSLFKPLQVTIVAWDPPGYGTSR-------PPERKFEVQFFMKDAEYAVDLMEAL---K 112 (277)
T ss_pred eeEeccccccc-ccccCCHHHHhcCCCCceEEEEECCCCCCCCC-------CCcccchHHHHHHhHHHHHHHHHHh---C
Confidence 45555666554 34567777777766555899999999955321 11112 12247888888877765 4
Q ss_pred CCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCC--cccccccccc---cCCccchh--------hcCCCCcHHHH---
Q 003878 617 SRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG--VMDMLRYHKF---TIGHAWVS--------DFGCSEEEEEF--- 680 (789)
Q Consensus 617 ~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p--~~d~~~~~~~---~~~~~~~~--------e~g~p~~~~~~--- 680 (789)
-.++.|+|+|-||..++.+|+++++.+.-.|.... .++-...+.+ .....|.. -||--.-+..+
T Consensus 113 ~~~fsvlGWSdGgiTalivAak~~e~v~rmiiwga~ayvn~~~~ma~kgiRdv~kWs~r~R~P~e~~Yg~e~f~~~wa~w 192 (277)
T KOG2984|consen 113 LEPFSVLGWSDGGITALIVAAKGKEKVNRMIIWGAAAYVNHLGAMAFKGIRDVNKWSARGRQPYEDHYGPETFRTQWAAW 192 (277)
T ss_pred CCCeeEeeecCCCeEEEEeeccChhhhhhheeecccceecchhHHHHhchHHHhhhhhhhcchHHHhcCHHHHHHHHHHH
Confidence 57999999999999999999999986655554432 2222221111 11112321 23211111111
Q ss_pred -HHHHhcCcc-------cCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEE
Q 003878 681 -YWLIKYSPL-------HNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGR 752 (789)
Q Consensus 681 -~~l~~~sP~-------~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~ 752 (789)
+...++--+ .-+.+ ..+|+||+||..|+.|+-.+.- |...+.. -.++.
T Consensus 193 vD~v~qf~~~~dG~fCr~~lp~----------vkcPtli~hG~kDp~~~~~hv~-fi~~~~~-------------~a~~~ 248 (277)
T KOG2984|consen 193 VDVVDQFHSFCDGRFCRLVLPQ----------VKCPTLIMHGGKDPFCGDPHVC-FIPVLKS-------------LAKVE 248 (277)
T ss_pred HHHHHHHhhcCCCchHhhhccc----------ccCCeeEeeCCcCCCCCCCCcc-chhhhcc-------------cceEE
Confidence 111111100 11233 3789999999999999987743 3333332 24789
Q ss_pred EeCCCCcCCCCchhhHHHHHHHHHHHHHH
Q 003878 753 IERKAGHGVGLPTQKMIDEAADRYGFMAK 781 (789)
Q Consensus 753 ~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 781 (789)
++|.++|.+.-.-. .+....+.+||.+
T Consensus 249 ~~peGkHn~hLrya--~eFnklv~dFl~~ 275 (277)
T KOG2984|consen 249 IHPEGKHNFHLRYA--KEFNKLVLDFLKS 275 (277)
T ss_pred EccCCCcceeeech--HHHHHHHHHHHhc
Confidence 99999999875433 3667788899864
No 206
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=98.22 E-value=9.9e-05 Score=75.23 Aligned_cols=236 Identities=13% Similarity=0.008 Sum_probs=133.1
Q ss_pred EEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHh
Q 003878 509 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHK 588 (789)
Q Consensus 509 ~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~ 588 (789)
..+.+.+.+| ..+..--.|-.....+.+..+||-+||+||+..+-.| ....|.+.|..++.+|+.|.|--...
T Consensus 7 ~~~k~~~~~~-~~~~~~a~y~D~~~~gs~~gTVv~~hGsPGSH~DFkY---i~~~l~~~~iR~I~iN~PGf~~t~~~--- 79 (297)
T PF06342_consen 7 KLVKFQAENG-KIVTVQAVYEDSLPSGSPLGTVVAFHGSPGSHNDFKY---IRPPLDEAGIRFIGINYPGFGFTPGY--- 79 (297)
T ss_pred EEEEcccccC-ceEEEEEEEEecCCCCCCceeEEEecCCCCCccchhh---hhhHHHHcCeEEEEeCCCCCCCCCCC---
Confidence 3455666777 6777766665544334456699999999998665443 34667779999999999997742211
Q ss_pred cccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcc--c---------c--
Q 003878 589 GGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM--D---------M-- 655 (789)
Q Consensus 589 ~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~--d---------~-- 655 (789)
.....+-.+-..-++.|.++--++ +++.++|||.|+-.++.+++.+|- .++++..|+- - +
T Consensus 80 ----~~~~~~n~er~~~~~~ll~~l~i~-~~~i~~gHSrGcenal~la~~~~~--~g~~lin~~G~r~HkgIrp~~r~~~ 152 (297)
T PF06342_consen 80 ----PDQQYTNEERQNFVNALLDELGIK-GKLIFLGHSRGCENALQLAVTHPL--HGLVLINPPGLRPHKGIRPLSRMET 152 (297)
T ss_pred ----cccccChHHHHHHHHHHHHHcCCC-CceEEEEeccchHHHHHHHhcCcc--ceEEEecCCccccccCcCHHHHHHH
Confidence 111222234445555566553344 799999999999999999999873 3444444321 0 0
Q ss_pred ccc----ccccCCc----cchhhcCCC--CcHHHHHHHHhcCcc------cCCCCCCCCCCCCCCCCCeEEEEecCCCCC
Q 003878 656 LRY----HKFTIGH----AWVSDFGCS--EEEEEFYWLIKYSPL------HNVRRPWEQNPDKPFQYPSTLLLTADHDDR 719 (789)
Q Consensus 656 ~~~----~~~~~~~----~~~~e~g~p--~~~~~~~~l~~~sP~------~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~ 719 (789)
+.+ .+...+. ..+.-.|-- ...+....|+...-. .+++...+ ...|+|++.|.+|..
T Consensus 153 i~~l~~~lp~~~~~~i~~~~y~~iG~KV~~GeeA~na~r~m~~~df~~q~~~I~~ln~-------~~ikvli~ygg~DhL 225 (297)
T PF06342_consen 153 INYLYDLLPRFIINAIMYFYYRMIGFKVSDGEEAINAMRSMQNCDFEEQKEYIDKLNK-------KPIKVLIAYGGKDHL 225 (297)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhCeeecChHHHHHHHHHHHhcCHHHHHHHHHHhcc-------CCCcEEEEEcCcchh
Confidence 000 0000000 001112322 223444455533222 12222211 247999999999999
Q ss_pred CCcHHHHHHHHHHHHhhccCCC------------CC-CCCCcEEEEEeCCCCcCCCCch
Q 003878 720 VVPLHSLKLLATMQYVLCTSLE------------NS-PQTNPIIGRIERKAGHGVGLPT 765 (789)
Q Consensus 720 V~~~~~~~~~~~L~~~~~~~~~------------~~-~~~~~~~l~~~~~~gH~~~~~~ 765 (789)
|--+.+.++....+...--+++ ++ .++..-.-..+...||...+..
T Consensus 226 IEeeI~~E~a~~f~~l~Hf~~~~~~seee~~kI~~~f~~~~~~~sv~f~~dgHf~qK~~ 284 (297)
T PF06342_consen 226 IEEEISFEFAMKFKGLDHFNIEKEISEEEKPKILKSFASGQKGASVFFAKDGHFQQKFR 284 (297)
T ss_pred hHHHHHHHHHHHhCCccceeeecCCChhHHHHHHHHHhcCCceeEEEEecCChHHhHHH
Confidence 9877777776665432000000 00 1233444456678899875543
No 207
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=98.22 E-value=0.00042 Score=74.05 Aligned_cols=261 Identities=13% Similarity=0.129 Sum_probs=152.6
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
-.+..+.|+.||..||++ ++...+++|+..++... ++... .|- ..+..|-..|
T Consensus 236 kdVT~L~Wn~~G~~LatG-----~~~G~~riw~~~G~l~~--tl~~H-------kgP----I~slKWnk~G--------- 288 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATG-----SEDGEARIWNKDGNLIS--TLGQH-------KGP----IFSLKWNKKG--------- 288 (524)
T ss_pred CCcceEEecCCCCeEEEe-----ecCcEEEEEecCchhhh--hhhcc-------CCc----eEEEEEcCCC---------
Confidence 357889999999999964 44558999998765332 12211 110 0112222333
Q ss_pred eeeEEEeeeccccceeeeeeec-----cccc-----ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEE
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVS-----QFKF-----SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHF 281 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~-----~~~~-----~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 281 (789)
+++.+++.+|+.-||...- ++.+ -.+.|-.+ ..|+-. .....|++.+
T Consensus 289 ---~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts-------------------~td~~i~V~k 345 (524)
T KOG0273|consen 289 ---TYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATS-------------------STDGCIHVCK 345 (524)
T ss_pred ---CEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC-ceEeec-------------------CCCceEEEEE
Confidence 4577778888888887633 2221 12455432 233322 1223478888
Q ss_pred CCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccc
Q 003878 282 LGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA 361 (789)
Q Consensus 282 lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~ 361 (789)
++.+... ..+... ..-+..+.|.|.|+.|+-.+.+ ..+-++...... ....+......
T Consensus 346 v~~~~P~--~t~~GH--~g~V~alk~n~tg~LLaS~SdD-----~TlkiWs~~~~~-------------~~~~l~~Hske 403 (524)
T KOG0273|consen 346 VGEDRPV--KTFIGH--HGEVNALKWNPTGSLLASCSDD-----GTLKIWSMGQSN-------------SVHDLQAHSKE 403 (524)
T ss_pred ecCCCcc--eeeecc--cCceEEEEECCCCceEEEecCC-----CeeEeeecCCCc-------------chhhhhhhccc
Confidence 8765432 233332 3345678999999988765543 224445443311 01111111122
Q ss_pred eeE-EEecCCCE-------EEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEE
Q 003878 362 QYE-VIANDDTV-------FTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQ 433 (789)
Q Consensus 362 ~~~-~~s~dG~~-------l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~ 433 (789)
.|. .|+|+|.- +.+++ .+.+.-|.++|+..+.....+..+. ..+.+++++++++.+++.+.++ .|.
T Consensus 404 i~t~~wsp~g~v~~n~~~~~~l~s--as~dstV~lwdv~~gv~i~~f~kH~--~pVysvafS~~g~ylAsGs~dg--~V~ 477 (524)
T KOG0273|consen 404 IYTIKWSPTGPVTSNPNMNLMLAS--ASFDSTVKLWDVESGVPIHTLMKHQ--EPVYSVAFSPNGRYLASGSLDG--CVH 477 (524)
T ss_pred eeeEeecCCCCccCCCcCCceEEE--eecCCeEEEEEccCCceeEeeccCC--CceEEEEecCCCcEEEecCCCC--eeE
Confidence 232 37776531 01111 1235667888888876445555665 5678999998788888888887 688
Q ss_pred EEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcC
Q 003878 434 IRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTS 471 (789)
Q Consensus 434 ~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss 471 (789)
+|+.++|+..+... ..+.|..+.|+.+++.+...++.
T Consensus 478 iws~~~~~l~~s~~-~~~~Ifel~Wn~~G~kl~~~~sd 514 (524)
T KOG0273|consen 478 IWSTKTGKLVKSYQ-GTGGIFELCWNAAGDKLGACASD 514 (524)
T ss_pred eccccchheeEeec-CCCeEEEEEEcCCCCEEEEEecC
Confidence 88998888755554 34567788999999988877653
No 208
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=0.00028 Score=72.06 Aligned_cols=165 Identities=12% Similarity=0.025 Sum_probs=95.6
Q ss_pred CCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccc
Q 003878 129 DGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYL 208 (789)
Q Consensus 129 ~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 208 (789)
++.-.|.++++||=+.... +++...+|++||+.+.+-.- +-...
T Consensus 98 GH~~~V~sL~~sP~~d~Fl-----S~S~D~tvrLWDlR~~~cqg--~l~~~----------------------------- 141 (311)
T KOG1446|consen 98 GHKKRVNSLSVSPKDDTFL-----SSSLDKTVRLWDLRVKKCQG--LLNLS----------------------------- 141 (311)
T ss_pred CCCceEEEEEecCCCCeEE-----ecccCCeEEeeEecCCCCce--EEecC-----------------------------
Confidence 4455788899999887665 55666799999998653321 11110
Q ss_pred ccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCC
Q 003878 209 RGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSE 288 (789)
Q Consensus 209 ~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~ 288 (789)
.-.-.++.|.|-.++.... . ..|.++++..=...
T Consensus 142 ---------------------------~~pi~AfDp~GLifA~~~~------------------~-~~IkLyD~Rs~dkg 175 (311)
T KOG1446|consen 142 ---------------------------GRPIAAFDPEGLIFALANG------------------S-ELIKLYDLRSFDKG 175 (311)
T ss_pred ---------------------------CCcceeECCCCcEEEEecC------------------C-CeEEEEEecccCCC
Confidence 0245788887755554311 1 14666666432222
Q ss_pred cEEEE--ecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc-cceeEE
Q 003878 289 DILCW--KDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF-DAQYEV 365 (789)
Q Consensus 289 ~~~~~--~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~ 365 (789)
.-..+ ..+++.. ...+.+|||||+|++++.. +.++++|.=+|.- ...+....... ...-..
T Consensus 176 PF~tf~i~~~~~~e-w~~l~FS~dGK~iLlsT~~-----s~~~~lDAf~G~~----------~~tfs~~~~~~~~~~~a~ 239 (311)
T KOG1446|consen 176 PFTTFSITDNDEAE-WTDLEFSPDGKSILLSTNA-----SFIYLLDAFDGTV----------KSTFSGYPNAGNLPLSAT 239 (311)
T ss_pred CceeEccCCCCccc-eeeeEEcCCCCEEEEEeCC-----CcEEEEEccCCcE----------eeeEeeccCCCCcceeEE
Confidence 22222 2223333 3578999999999998753 5588998766520 00010000000 111245
Q ss_pred EecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 366 IANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 366 ~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
++|||+.+... +.+++|..++++++.
T Consensus 240 ftPds~Fvl~g----s~dg~i~vw~~~tg~ 265 (311)
T KOG1446|consen 240 FTPDSKFVLSG----SDDGTIHVWNLETGK 265 (311)
T ss_pred ECCCCcEEEEe----cCCCcEEEEEcCCCc
Confidence 89999876532 345789999998886
No 209
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.19 E-value=0.00077 Score=70.00 Aligned_cols=280 Identities=15% Similarity=0.124 Sum_probs=161.5
Q ss_pred cEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccc
Q 003878 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRG 210 (789)
Q Consensus 131 ~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 210 (789)
..++..+-+.|+--.++ ..++.++|++||..||+.+. .+.+. +. + .+.+ +-
T Consensus 108 r~~vt~v~~hp~~~~v~-----~as~d~tikv~D~~tg~~e~-~LrGH----t~--s-v~di----------------~~ 158 (406)
T KOG0295|consen 108 RSSVTRVIFHPSEALVV-----SASEDATIKVFDTETGELER-SLRGH----TD--S-VFDI----------------SF 158 (406)
T ss_pred ccceeeeeeccCceEEE-----EecCCceEEEEEccchhhhh-hhhcc----cc--c-eeEE----------------EE
Confidence 34566677778754444 23457899999999997642 22221 00 0 0000 00
Q ss_pred ceeeEEEeeeccccceeeeeeec-----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEE
Q 003878 211 IFFFFYLFSLVKSTIYSFWSVVS-----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYY 279 (789)
Q Consensus 211 ~~~~~~~~~s~~~g~~~l~~~~~-----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (789)
--+-++|.++..+-..+||...- ....+++.+-|-|..|+-. .+.+.|..
T Consensus 159 ~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~-------------------srD~tik~ 219 (406)
T KOG0295|consen 159 DASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSC-------------------SRDNTIKA 219 (406)
T ss_pred ecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeec-------------------ccccceeE
Confidence 00115666666666689998765 2224788899999777633 34456888
Q ss_pred EECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc
Q 003878 280 HFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF 359 (789)
Q Consensus 280 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~ 359 (789)
|++.++-. ++.-+.++.++..+..+-||..++-.+. ...|.++-++++..+.. ++ ....+..++.-..
T Consensus 220 We~~tg~c----v~t~~~h~ewvr~v~v~~DGti~As~s~-----dqtl~vW~~~t~~~k~~-lR--~hEh~vEci~wap 287 (406)
T KOG0295|consen 220 WECDTGYC----VKTFPGHSEWVRMVRVNQDGTIIASCSN-----DQTLRVWVVATKQCKAE-LR--EHEHPVECIAWAP 287 (406)
T ss_pred Eeccccee----EEeccCchHhEEEEEecCCeeEEEecCC-----CceEEEEEeccchhhhh-hh--ccccceEEEEecc
Confidence 88887643 3333445567778888999987764432 34566666665421100 00 0011111111000
Q ss_pred cceeEEE---ec--CCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEE
Q 003878 360 DAQYEVI---AN--DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQI 434 (789)
Q Consensus 360 ~~~~~~~---s~--dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~ 434 (789)
...++.+ .+ +|..+.....+ +..|-.+|+.++.-.-+|..+. ..+.+++++++++.+++..+|. .|.+
T Consensus 288 ~~~~~~i~~at~~~~~~~~l~s~Sr---DktIk~wdv~tg~cL~tL~ghd--nwVr~~af~p~Gkyi~ScaDDk--tlrv 360 (406)
T KOG0295|consen 288 ESSYPSISEATGSTNGGQVLGSGSR---DKTIKIWDVSTGMCLFTLVGHD--NWVRGVAFSPGGKYILSCADDK--TLRV 360 (406)
T ss_pred cccCcchhhccCCCCCccEEEeecc---cceEEEEeccCCeEEEEEeccc--ceeeeeEEcCCCeEEEEEecCC--cEEE
Confidence 1112211 11 22233333322 3567778998886455666665 5688999998788888888887 7899
Q ss_pred EECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEE
Q 003878 435 RDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVY 479 (789)
Q Consensus 435 ~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly 479 (789)
||+++++..+.+..+..-+..+.+..+.. ++...+..++..++
T Consensus 361 wdl~~~~cmk~~~ah~hfvt~lDfh~~~p--~VvTGsVdqt~Kvw 403 (406)
T KOG0295|consen 361 WDLKNLQCMKTLEAHEHFVTSLDFHKTAP--YVVTGSVDQTVKVW 403 (406)
T ss_pred EEeccceeeeccCCCcceeEEEecCCCCc--eEEeccccceeeee
Confidence 99998887777776666666666654444 44445555555443
No 210
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=98.18 E-value=0.00028 Score=70.34 Aligned_cols=246 Identities=17% Similarity=0.127 Sum_probs=139.9
Q ss_pred CCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccc
Q 003878 129 DGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYL 208 (789)
Q Consensus 129 ~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 208 (789)
+++.++-.+.++.|.++|. .|+...++++||+++|+.+...-.++
T Consensus 50 GHtGavW~~Did~~s~~li-----TGSAD~t~kLWDv~tGk~la~~k~~~------------------------------ 94 (327)
T KOG0643|consen 50 GHTGAVWCCDIDWDSKHLI-----TGSADQTAKLWDVETGKQLATWKTNS------------------------------ 94 (327)
T ss_pred CCCceEEEEEecCCcceee-----eccccceeEEEEcCCCcEEEEeecCC------------------------------
Confidence 4556677788999999998 67778999999999998876322222
Q ss_pred ccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCC--
Q 003878 209 RGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQ-- 286 (789)
Q Consensus 209 ~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~-- 286 (789)
....+.|+++|..++++.... .+....|.+.++..+.
T Consensus 95 ---------------------------~Vk~~~F~~~gn~~l~~tD~~--------------mg~~~~v~~fdi~~~~~~ 133 (327)
T KOG0643|consen 95 ---------------------------PVKRVDFSFGGNLILASTDKQ--------------MGYTCFVSVFDIRDDSSD 133 (327)
T ss_pred ---------------------------eeEEEeeccCCcEEEEEehhh--------------cCcceEEEEEEccCChhh
Confidence 246788999999999987543 3455567777776333
Q ss_pred --CCc-EEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec--cccc
Q 003878 287 --SED-ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID--GFDA 361 (789)
Q Consensus 287 --~~~-~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~--~~~~ 361 (789)
+++ .+...-+ ...+..+-|+|-|++|+..-.+ ..|-.+|+.+|.. ...-.. ....
T Consensus 134 ~~s~ep~~kI~t~--~skit~a~Wg~l~~~ii~Ghe~-----G~is~~da~~g~~-------------~v~s~~~h~~~I 193 (327)
T KOG0643|consen 134 IDSEEPYLKIPTP--DSKITSALWGPLGETIIAGHED-----GSISIYDARTGKE-------------LVDSDEEHSSKI 193 (327)
T ss_pred hcccCceEEecCC--ccceeeeeecccCCEEEEecCC-----CcEEEEEcccCce-------------eeechhhhcccc
Confidence 222 2322222 2345678899999999865433 3477788887520 111100 0111
Q ss_pred eeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEec-CCEEEEEEEeCCeEEEEEEECCCC
Q 003878 362 QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN-LNQMIVSYLSDVKYVLQIRDLKNG 440 (789)
Q Consensus 362 ~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~-~~~lv~~~~~~g~~~L~~~dl~tG 440 (789)
..-.+++|..+|+ ...++ ...+| +|..+-+-.++...+. .+...++++ .+++++..-.++. .+-.-..+.|
T Consensus 194 nd~q~s~d~T~Fi-T~s~D-ttakl--~D~~tl~v~Kty~te~---PvN~aaisP~~d~VilgGGqeA~-dVTTT~~r~G 265 (327)
T KOG0643|consen 194 NDLQFSRDRTYFI-TGSKD-TTAKL--VDVRTLEVLKTYTTER---PVNTAAISPLLDHVILGGGQEAM-DVTTTSTRAG 265 (327)
T ss_pred ccccccCCcceEE-ecccC-cccee--eeccceeeEEEeeecc---cccceecccccceEEecCCceee-eeeeeccccc
Confidence 1123677765443 33332 23333 4555443233333333 344445554 2677765554432 2222222224
Q ss_pred c------------eeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEE
Q 003878 441 S------------LLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCN 482 (789)
Q Consensus 441 ~------------~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~d 482 (789)
+ ...++..+-|.+.+++++|+|+ +|+|-..-+.+.++.
T Consensus 266 KFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGk----sYsSGGEDG~VR~h~ 315 (327)
T KOG0643|consen 266 KFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGK----SYSSGGEDGYVRLHH 315 (327)
T ss_pred chhhhHHHHHHHHHhccccccccCcceeEECCCCc----ccccCCCCceEEEEE
Confidence 2 1223343466778889999998 445555555555443
No 211
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.16 E-value=0.00087 Score=69.66 Aligned_cols=118 Identities=10% Similarity=0.116 Sum_probs=79.0
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
+.-+|....||.||.+|| .|+=...|.||+..+|...-.....+.
T Consensus 105 HKDSVt~~~FshdgtlLA-----TGdmsG~v~v~~~stg~~~~~~~~e~~------------------------------ 149 (399)
T KOG0296|consen 105 HKDSVTCCSFSHDGTLLA-----TGDMSGKVLVFKVSTGGEQWKLDQEVE------------------------------ 149 (399)
T ss_pred CCCceEEEEEccCceEEE-----ecCCCccEEEEEcccCceEEEeecccC------------------------------
Confidence 345688899999999999 566667899999999964321111110
Q ss_pred cceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCc
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED 289 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~ 289 (789)
...=+.|.|-+..|+....+ -.+|.|.++.+ ..
T Consensus 150 --------------------------dieWl~WHp~a~illAG~~D-------------------GsvWmw~ip~~--~~ 182 (399)
T KOG0296|consen 150 --------------------------DIEWLKWHPRAHILLAGSTD-------------------GSVWMWQIPSQ--AL 182 (399)
T ss_pred --------------------------ceEEEEecccccEEEeecCC-------------------CcEEEEECCCc--ce
Confidence 12456799988777765433 24899999874 23
Q ss_pred EEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCC
Q 003878 290 ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSAL 336 (789)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g 336 (789)
..++.++.-+ .....++||||+++-...+ ..|.+++++++
T Consensus 183 ~kv~~Gh~~~--ct~G~f~pdGKr~~tgy~d-----gti~~Wn~ktg 222 (399)
T KOG0296|consen 183 CKVMSGHNSP--CTCGEFIPDGKRILTGYDD-----GTIIVWNPKTG 222 (399)
T ss_pred eeEecCCCCC--cccccccCCCceEEEEecC-----ceEEEEecCCC
Confidence 4456554322 2346789999999866543 44788888775
No 212
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.15 E-value=0.0017 Score=71.06 Aligned_cols=170 Identities=15% Similarity=0.144 Sum_probs=85.0
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCC--cEEEEecCCCCeeEEEEEEecCCcEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSE--DILCWKDPEHPKYIFSGHVTEDGQYLV 315 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~--~~~~~~~~~~~~~~~~~~~SpDG~~l~ 315 (789)
..+.++|||+.++..-. ...+|+.+++.....+ .......+... --..+.++|||++++
T Consensus 147 H~v~~~pdg~~v~v~dl------------------G~D~v~~~~~~~~~~~l~~~~~~~~~~G~-GPRh~~f~pdg~~~Y 207 (345)
T PF10282_consen 147 HQVVFSPDGRFVYVPDL------------------GADRVYVYDIDDDTGKLTPVDSIKVPPGS-GPRHLAFSPDGKYAY 207 (345)
T ss_dssp EEEEE-TTSSEEEEEET------------------TTTEEEEEEE-TTS-TEEEEEEEECSTTS-SEEEEEE-TTSSEEE
T ss_pred eeEEECCCCCEEEEEec------------------CCCEEEEEEEeCCCceEEEeeccccccCC-CCcEEEEcCCcCEEE
Confidence 56899999999987632 2346888888655422 11112222211 123578999999988
Q ss_pred EEEEcCCCCceEEEEEECC--CCCCCcccccccCCCCccEeeecccc----ceeEEEecCCCEEEEEECCCCCCceEEEE
Q 003878 316 MCIEENCDPVNKVYYCDLS--ALPEGLEGFKKRDGLLPFVKLIDGFD----AQYEVIANDDTVFTFLTNKDAPKYKIIRV 389 (789)
Q Consensus 316 ~~~~~~~~~~~~i~~~d~~--~g~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~s~dG~~l~~~tn~~~~~~~L~~~ 389 (789)
+.... .+.|.++++. ++. +..+ .....+..++. ..--.++|||++||+ +|++. ..|..+
T Consensus 208 v~~e~----s~~v~v~~~~~~~g~--~~~~------~~~~~~~~~~~~~~~~~~i~ispdg~~lyv-snr~~--~sI~vf 272 (345)
T PF10282_consen 208 VVNEL----SNTVSVFDYDPSDGS--LTEI------QTISTLPEGFTGENAPAEIAISPDGRFLYV-SNRGS--NSISVF 272 (345)
T ss_dssp EEETT----TTEEEEEEEETTTTE--EEEE------EEEESCETTSCSSSSEEEEEE-TTSSEEEE-EECTT--TEEEEE
T ss_pred EecCC----CCcEEEEeecccCCc--eeEE------EEeeeccccccccCCceeEEEecCCCEEEE-EeccC--CEEEEE
Confidence 76532 3556666665 321 1000 00000111111 112248999998875 66654 445555
Q ss_pred EC--CCCC-CeEEeccCCCCceeeeEEEecCCE-EEEEEEeCCeEEEEEEECCCCce
Q 003878 390 DL--KEPN-DWFEVIPEAERDVLESATAVNLNQ-MIVSYLSDVKYVLQIRDLKNGSL 442 (789)
Q Consensus 390 dl--~~~~-~~~~l~~~~~~~~i~~v~~~~~~~-lv~~~~~~g~~~L~~~dl~tG~~ 442 (789)
++ +++. .....++-. ...-..+.+++++. |++.....+.-.++.+|.++|..
T Consensus 273 ~~d~~~g~l~~~~~~~~~-G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l 328 (345)
T PF10282_consen 273 DLDPATGTLTLVQTVPTG-GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKL 328 (345)
T ss_dssp EECTTTTTEEEEEEEEES-SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred EEecCCCceEEEEEEeCC-CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcE
Confidence 55 4444 111222222 23346788887654 55444444444566667777764
No 213
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.15 E-value=0.00022 Score=71.00 Aligned_cols=172 Identities=9% Similarity=0.049 Sum_probs=97.9
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCC--cccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSN--LYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYL 314 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l 314 (789)
...+.|+|+|+.|++......++ +... ....||+.+......+ ..+... ...+.+++|||+|+.+
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~---------~~ks~~~~~~l~~~~~~~~~~~---~i~l~~-~~~I~~~~WsP~g~~f 74 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDK---------SGKSYYGEFELFYLNEKNIPVE---SIELKK-EGPIHDVAWSPNGNEF 74 (194)
T ss_pred eEEEEecccCCEEEEEEEEeecc---------CcceEEeeEEEEEEecCCCccc---eeeccC-CCceEEEEECcCCCEE
Confidence 36799999999999876522111 0011 2234666544332221 222222 1226789999999999
Q ss_pred EEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCC
Q 003878 315 VMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEP 394 (789)
Q Consensus 315 ~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~ 394 (789)
++..... ...+.++|++..+ ...+ .........|+|+|+.|++..-. ..++.|..+|+.+.
T Consensus 75 avi~g~~---~~~v~lyd~~~~~--------------i~~~-~~~~~n~i~wsP~G~~l~~~g~~-n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 75 AVIYGSM---PAKVTLYDVKGKK--------------IFSF-GTQPRNTISWSPDGRFLVLAGFG-NLNGDLEFWDVRKK 135 (194)
T ss_pred EEEEccC---CcccEEEcCcccE--------------eEee-cCCCceEEEECCCCCEEEEEEcc-CCCcEEEEEECCCC
Confidence 8765322 2357777776311 1111 11111234599999988876543 23478999999854
Q ss_pred CCeEEeccCCCCceeeeEEEecCCEEEEEEEeC----CeEEEEEEECCCCceeee
Q 003878 395 NDWFEVIPEAERDVLESATAVNLNQMIVSYLSD----VKYVLQIRDLKNGSLLHQ 445 (789)
Q Consensus 395 ~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~----g~~~L~~~dl~tG~~~~~ 445 (789)
+ .+.... ......+.|+++++.+++.... ..+.+.+|+.. |+.+.+
T Consensus 136 ~---~i~~~~-~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 136 K---KISTFE-HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred E---Eeeccc-cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEe
Confidence 3 332222 2346788999976655555432 22356777776 665443
No 214
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.15 E-value=0.00049 Score=73.92 Aligned_cols=229 Identities=16% Similarity=0.177 Sum_probs=143.8
Q ss_pred EEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccccee
Q 003878 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFF 213 (789)
Q Consensus 134 ~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 213 (789)
+.++.+-.||+.|| .|++...++|+|..+..++. .+...
T Consensus 71 v~s~~fR~DG~Lla-----aGD~sG~V~vfD~k~r~iLR-~~~ah----------------------------------- 109 (487)
T KOG0310|consen 71 VYSVDFRSDGRLLA-----AGDESGHVKVFDMKSRVILR-QLYAH----------------------------------- 109 (487)
T ss_pred eeEEEeecCCeEEE-----ccCCcCcEEEeccccHHHHH-HHhhc-----------------------------------
Confidence 66788999999999 57777899999977754442 22211
Q ss_pred eEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEE
Q 003878 214 FFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCW 293 (789)
Q Consensus 214 ~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~ 293 (789)
+.......|+|++.+++.+..+. ..+.+|++.+.. ..+
T Consensus 110 --------------------~apv~~~~f~~~d~t~l~s~sDd------------------~v~k~~d~s~a~----v~~ 147 (487)
T KOG0310|consen 110 --------------------QAPVHVTKFSPQDNTMLVSGSDD------------------KVVKYWDLSTAY----VQA 147 (487)
T ss_pred --------------------cCceeEEEecccCCeEEEecCCC------------------ceEEEEEcCCcE----EEE
Confidence 00345678899999998875443 346778887653 244
Q ss_pred ecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEE
Q 003878 294 KDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVF 373 (789)
Q Consensus 294 ~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l 373 (789)
+...+..|+...+++|-...++++..- ...|.++|+.... .....+-.+...+...+-|.|..|
T Consensus 148 ~l~~htDYVR~g~~~~~~~hivvtGsY----Dg~vrl~DtR~~~------------~~v~elnhg~pVe~vl~lpsgs~i 211 (487)
T KOG0310|consen 148 ELSGHTDYVRCGDISPANDHIVVTGSY----DGKVRLWDTRSLT------------SRVVELNHGCPVESVLALPSGSLI 211 (487)
T ss_pred EecCCcceeEeeccccCCCeEEEecCC----CceEEEEEeccCC------------ceeEEecCCCceeeEEEcCCCCEE
Confidence 555667788889999999988876532 3457788876621 111222222222223355777766
Q ss_pred EEEECCCCCCceEEEEECCCCCCeEEeccCC-CCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCee
Q 003878 374 TFLTNKDAPKYKIIRVDLKEPNDWFEVIPEA-ERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGS 452 (789)
Q Consensus 374 ~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~-~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~ 452 (789)
+- ++...+-+||+.+|. +.+.... ....+..+.+..++.-+++..-|+ ++.++|..+=+.+.....| +.
T Consensus 212 as-----AgGn~vkVWDl~~G~--qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~--~VKVfd~t~~Kvv~s~~~~-~p 281 (487)
T KOG0310|consen 212 AS-----AGGNSVKVWDLTTGG--QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR--HVKVFDTTNYKVVHSWKYP-GP 281 (487)
T ss_pred EE-----cCCCeEEEEEecCCc--eehhhhhcccceEEEEEeecCCceEeeccccc--ceEEEEccceEEEEeeecc-cc
Confidence 52 334578889998665 3333222 234566777666556666666666 6788886544444444444 34
Q ss_pred EEEeecccCCcEEEEEEcC
Q 003878 453 VNAISARREDSVVFISFTS 471 (789)
Q Consensus 453 v~~~s~s~d~~~l~~~~ss 471 (789)
|-+++.+||+..+++..++
T Consensus 282 vLsiavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 282 VLSIAVSPDDQTVVIGMSN 300 (487)
T ss_pred eeeEEecCCCceEEEeccc
Confidence 5567888888888775543
No 215
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=0.00066 Score=73.96 Aligned_cols=198 Identities=11% Similarity=0.084 Sum_probs=112.5
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCc-EEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED-ILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~-~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
..+.|||-+.-|+|..-. ..+.|.++-+..+.+.+.-. .-++... -.-+.|-..|+||.+
T Consensus 350 r~FswsP~~~llAYwtpe--------------~~~~parvtL~evPs~~~iRt~nlfnVs-----DckLhWQk~gdyLcv 410 (698)
T KOG2314|consen 350 RDFSWSPTSNLLAYWTPE--------------TNNIPARVTLMEVPSKREIRTKNLFNVS-----DCKLHWQKSGDYLCV 410 (698)
T ss_pred cCcccCCCcceEEEEccc--------------ccCCcceEEEEecCccceeeeccceeee-----ccEEEeccCCcEEEE
Confidence 578999999999998422 13456667777766543211 0112211 135789999999999
Q ss_pred EEEcCCCC-------ceEEEEEECCCCCCCcccccccCCCCccEeeecccccee-EEEecCCCEEEEEECCC-CCCceEE
Q 003878 317 CIEENCDP-------VNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIANDDTVFTFLTNKD-APKYKII 387 (789)
Q Consensus 317 ~~~~~~~~-------~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dG~~l~~~tn~~-~~~~~L~ 387 (789)
...+.... +-+|+.++-.. .|+..+-- .+... -.|.|.|+.+.+++... ..+-+.|
T Consensus 411 kvdR~tK~~~~g~f~n~eIfrireKd--------------Ipve~vel-ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY 475 (698)
T KOG2314|consen 411 KVDRHTKSKVKGQFSNLEIFRIREKD--------------IPVEVVEL-KESVIAFAWEPHGDKFAVISGNTVKNTVSFY 475 (698)
T ss_pred EEEeeccccccceEeeEEEEEeeccC--------------CCceeeec-chheeeeeeccCCCeEEEEEccccccceeEE
Confidence 88765421 23455444322 22222110 11112 23999999999887643 3456667
Q ss_pred EEECCCCCCeEEeccCCCCceeeeEEEecCC-EEEEEEEeCCeEEEEEEECCCCceeeecccC-CeeEEEeecccCCcEE
Q 003878 388 RVDLKEPNDWFEVIPEAERDVLESATAVNLN-QMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAISARREDSVV 465 (789)
Q Consensus 388 ~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~-~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~-~~~v~~~s~s~d~~~l 465 (789)
.+...... ++ ++..-+...-..+.|++.+ .+++.........|..+|.+-... +.+..+ ....+.+.|+|.|+.+
T Consensus 476 ~~e~~~~~-~~-lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~-k~~~~~eh~~at~veWDPtGRYv 552 (698)
T KOG2314|consen 476 AVETNIKK-PS-LVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADL-KDTASPEHFAATEVEWDPTGRYV 552 (698)
T ss_pred EeecCCCc-hh-hhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhh-hhccCccccccccceECCCCCEE
Confidence 66643333 33 2222223445678888844 455666555556899999863222 344333 3334567789989866
Q ss_pred EEEEcCC
Q 003878 466 FISFTSF 472 (789)
Q Consensus 466 ~~~~ss~ 472 (789)
.-+.+++
T Consensus 553 vT~ss~w 559 (698)
T KOG2314|consen 553 VTSSSSW 559 (698)
T ss_pred EEeeehh
Confidence 5444443
No 216
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=98.13 E-value=4e-05 Score=81.02 Aligned_cols=112 Identities=21% Similarity=0.200 Sum_probs=71.7
Q ss_pred CCccEEEEEcCCCCccCCCCCC-----HHHHHHHH------cCCeEEEEEeecCCC--CCChh-HHhccc---ccCCcch
Q 003878 536 GSHPCLLYGYGGFNISVTPSFS-----VSRTILMR------HLGAVFCIANIRGGG--EYGEE-WHKGGA---LAKKQNC 598 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~-----~~~~~~l~------~~G~~v~~~~~RG~g--~~g~~-~~~~~~---~~~~~~~ 598 (789)
.+..+||++||-.|.+...... .-|..++- -.-|-|++.|.=||. ..|+. ....|+ .....-+
T Consensus 49 ~~~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~r~fvIc~NvlG~c~GStgP~s~~p~g~~yg~~FP~~t 128 (368)
T COG2021 49 EKDNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFFVICTNVLGGCKGSTGPSSINPGGKPYGSDFPVIT 128 (368)
T ss_pred cCCceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCccceEEEEecCCCCCCCCCCCCCcCCCCCccccCCCccc
Confidence 4567999999976643322210 11233332 233889999998764 23332 111111 1123356
Q ss_pred HHHHHHHHHHHHHc-CCCCCCcEE-EEeeChHHHHHHHHHHhCCCceeEEEecC
Q 003878 599 FDDFISASEYLISA-GYTQSRKLC-IEGGSNGGLLVGACINQRPDLFGCALAHV 650 (789)
Q Consensus 599 ~~D~~~~~~~L~~~-~~~d~~~i~-i~G~S~GG~l~~~~~~~~pd~f~a~v~~~ 650 (789)
+.|.+.+-+.|++. |+ ++|. |+|+||||+.++..+..+||+...+|..+
T Consensus 129 i~D~V~aq~~ll~~LGI---~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia 179 (368)
T COG2021 129 IRDMVRAQRLLLDALGI---KKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIA 179 (368)
T ss_pred HHHHHHHHHHHHHhcCc---ceEeeeeccChHHHHHHHHHHhChHHHhhhheec
Confidence 78999998888776 44 3565 99999999999999999999877666543
No 217
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=98.12 E-value=1.3e-05 Score=80.48 Aligned_cols=117 Identities=19% Similarity=0.211 Sum_probs=76.8
Q ss_pred EEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHh
Q 003878 509 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHK 588 (789)
Q Consensus 509 ~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~ 588 (789)
+.+.++..++ ++..++-.|. ....|++++.|||..+ ...|......+....-..++++|.||.|+.--+-..
T Consensus 51 edv~i~~~~~--t~n~Y~t~~~----~t~gpil~l~HG~G~S--~LSfA~~a~el~s~~~~r~~a~DlRgHGeTk~~~e~ 122 (343)
T KOG2564|consen 51 EDVSIDGSDL--TFNVYLTLPS----ATEGPILLLLHGGGSS--ALSFAIFASELKSKIRCRCLALDLRGHGETKVENED 122 (343)
T ss_pred cccccCCCcc--eEEEEEecCC----CCCccEEEEeecCccc--chhHHHHHHHHHhhcceeEEEeeccccCccccCChh
Confidence 3455554443 5666665554 2467999999997544 345555445555555677899999999874221111
Q ss_pred cccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC
Q 003878 589 GGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR 639 (789)
Q Consensus 589 ~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~ 639 (789)
.........|+.+.++++-.. ++.+|+++||||||.++...+...
T Consensus 123 ---dlS~eT~~KD~~~~i~~~fge---~~~~iilVGHSmGGaIav~~a~~k 167 (343)
T KOG2564|consen 123 ---DLSLETMSKDFGAVIKELFGE---LPPQIILVGHSMGGAIAVHTAASK 167 (343)
T ss_pred ---hcCHHHHHHHHHHHHHHHhcc---CCCceEEEeccccchhhhhhhhhh
Confidence 122233457888888888743 456799999999999998877653
No 218
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=98.12 E-value=1.1e-05 Score=85.27 Aligned_cols=130 Identities=13% Similarity=0.082 Sum_probs=89.0
Q ss_pred EEEEEEecCC-CceEEEEEEEecCCCC---CCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCC
Q 003878 508 VHQVFVPSKD-GSTKIPMFIVSKKNIK---LDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYG 583 (789)
Q Consensus 508 ~~~~~~~s~d-g~~~i~~~l~~p~~~~---~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g 583 (789)
...+++.... + .+++..+++|.... .-.+.|+|++.||.... ...|.. ....+++.||+|+.++..|+..-+
T Consensus 38 ~~~i~~~~~~r~-~~~~v~~~~p~~~~~~~~~~~~PlvvlshG~Gs~--~~~f~~-~A~~lAs~Gf~Va~~~hpgs~~~~ 113 (365)
T COG4188 38 FVTITLNDPQRD-RERPVDLRLPQGGTGTVALYLLPLVVLSHGSGSY--VTGFAW-LAEHLASYGFVVAAPDHPGSNAGG 113 (365)
T ss_pred EEEEeccCcccC-CccccceeccCCCccccccCcCCeEEecCCCCCC--ccchhh-hHHHHhhCceEEEeccCCCccccc
Confidence 4455555543 5 68999999998643 12488999999996443 233332 355667799999999999976544
Q ss_pred hhHHhcccccCCc----chHHHHHHHHHHHHHc-------CCCCCCcEEEEeeChHHHHHHHHHHhCCC
Q 003878 584 EEWHKGGALAKKQ----NCFDDFISASEYLISA-------GYTQSRKLCIEGGSNGGLLVGACINQRPD 641 (789)
Q Consensus 584 ~~~~~~~~~~~~~----~~~~D~~~~~~~L~~~-------~~~d~~~i~i~G~S~GG~l~~~~~~~~pd 641 (789)
..=+.++...... .--.|+-..+++|... +-.|+.+|++.|||+||+.++.++.-+.+
T Consensus 114 ~~~~~~~~~~~~p~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~~ 182 (365)
T COG4188 114 APAAYAGPGSYAPAEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAELD 182 (365)
T ss_pred CChhhcCCcccchhhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhcccccc
Confidence 4434443222111 1235777788887766 34688999999999999999988776554
No 219
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.11 E-value=0.0033 Score=65.77 Aligned_cols=172 Identities=15% Similarity=0.136 Sum_probs=89.9
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEE--EecCCCCeeEEEEEEecCCcEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILC--WKDPEHPKYIFSGHVTEDGQYLV 315 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~--~~~~~~~~~~~~~~~SpDG~~l~ 315 (789)
....++||++.|+.... ...+|+.+++..+.-+.... ......| .-+.|.|+|+++.
T Consensus 148 H~a~~tP~~~~l~v~DL------------------G~Dri~~y~~~dg~L~~~~~~~v~~G~GP---RHi~FHpn~k~aY 206 (346)
T COG2706 148 HSANFTPDGRYLVVPDL------------------GTDRIFLYDLDDGKLTPADPAEVKPGAGP---RHIVFHPNGKYAY 206 (346)
T ss_pred ceeeeCCCCCEEEEeec------------------CCceEEEEEcccCccccccccccCCCCCc---ceEEEcCCCcEEE
Confidence 45678999999987632 23457777776433222111 1222223 2468999999987
Q ss_pred EEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccce-e---EEEecCCCEEEEEECCCCCCceEEEEEC
Q 003878 316 MCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ-Y---EVIANDDTVFTFLTNKDAPKYKIIRVDL 391 (789)
Q Consensus 316 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~-~---~~~s~dG~~l~~~tn~~~~~~~L~~~dl 391 (789)
+...-.+ +-.+|-++-..++ ++. -+....+..++... + --+++||+.|| .+|+....-.++.+|.
T Consensus 207 ~v~EL~s--tV~v~~y~~~~g~--~~~------lQ~i~tlP~dF~g~~~~aaIhis~dGrFLY-asNRg~dsI~~f~V~~ 275 (346)
T COG2706 207 LVNELNS--TVDVLEYNPAVGK--FEE------LQTIDTLPEDFTGTNWAAAIHISPDGRFLY-ASNRGHDSIAVFSVDP 275 (346)
T ss_pred EEeccCC--EEEEEEEcCCCce--EEE------eeeeccCccccCCCCceeEEEECCCCCEEE-EecCCCCeEEEEEEcC
Confidence 7654321 3334444433222 110 01111111222211 1 12789998776 6888766556666676
Q ss_pred CCCC-CeEEeccCCCCceeeeEEEecCCEEEEEEEeCC-eEEEEEEECCCCce
Q 003878 392 KEPN-DWFEVIPEAERDVLESATAVNLNQMIVSYLSDV-KYVLQIRDLKNGSL 442 (789)
Q Consensus 392 ~~~~-~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g-~~~L~~~dl~tG~~ 442 (789)
.++. .....++.. ...-.++.+.+++.+++...+++ .-.++..|.++|+.
T Consensus 276 ~~g~L~~~~~~~te-g~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L 327 (346)
T COG2706 276 DGGKLELVGITPTE-GQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRL 327 (346)
T ss_pred CCCEEEEEEEeccC-CcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceE
Confidence 6664 111222221 23235677776555555555554 34677777777765
No 220
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.10 E-value=8.1e-05 Score=74.39 Aligned_cols=205 Identities=12% Similarity=0.045 Sum_probs=109.7
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCC-
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGY- 614 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~- 614 (789)
.+.-++.+.|-|.+.+.-..|. .-|. .-..++.+.+.|-+.. .+...++|+.+.++.|...-.
T Consensus 6 ~~~~L~cfP~AGGsa~~fr~W~----~~lp-~~iel~avqlPGR~~r-----------~~ep~~~di~~Lad~la~el~~ 69 (244)
T COG3208 6 ARLRLFCFPHAGGSASLFRSWS----RRLP-ADIELLAVQLPGRGDR-----------FGEPLLTDIESLADELANELLP 69 (244)
T ss_pred CCceEEEecCCCCCHHHHHHHH----hhCC-chhheeeecCCCcccc-----------cCCcccccHHHHHHHHHHHhcc
Confidence 3445666667665443322222 2333 2366888898885431 122334566666666665522
Q ss_pred CCC-CcEEEEeeChHHHHHHHHHHhC------CCceeEEEecCCcccccccccccCCccch---hhc-CCC----CcHHH
Q 003878 615 TQS-RKLCIEGGSNGGLLVGACINQR------PDLFGCALAHVGVMDMLRYHKFTIGHAWV---SDF-GCS----EEEEE 679 (789)
Q Consensus 615 ~d~-~~i~i~G~S~GG~l~~~~~~~~------pd~f~a~v~~~p~~d~~~~~~~~~~~~~~---~e~-g~p----~~~~~ 679 (789)
..+ ...++.||||||+++..++-+. |..+=..-+..|..+-........-..+. .++ |.| +|+|.
T Consensus 70 ~~~d~P~alfGHSmGa~lAfEvArrl~~~g~~p~~lfisg~~aP~~~~~~~i~~~~D~~~l~~l~~lgG~p~e~led~El 149 (244)
T COG3208 70 PLLDAPFALFGHSMGAMLAFEVARRLERAGLPPRALFISGCRAPHYDRGKQIHHLDDADFLADLVDLGGTPPELLEDPEL 149 (244)
T ss_pred ccCCCCeeecccchhHHHHHHHHHHHHHcCCCcceEEEecCCCCCCcccCCccCCCHHHHHHHHHHhCCCChHHhcCHHH
Confidence 222 4799999999999999887643 33233333445633321111100001111 122 444 44443
Q ss_pred HHHH--------HhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEE
Q 003878 680 FYWL--------IKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIG 751 (789)
Q Consensus 680 ~~~l--------~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l 751 (789)
.+.+ +...-|...... ...+|+.++.|++|..|...+...|.+.. +....+
T Consensus 150 ~~l~LPilRAD~~~~e~Y~~~~~~--------pl~~pi~~~~G~~D~~vs~~~~~~W~~~t-------------~~~f~l 208 (244)
T COG3208 150 MALFLPILRADFRALESYRYPPPA--------PLACPIHAFGGEKDHEVSRDELGAWREHT-------------KGDFTL 208 (244)
T ss_pred HHHHHHHHHHHHHHhcccccCCCC--------CcCcceEEeccCcchhccHHHHHHHHHhh-------------cCCceE
Confidence 2211 111222222222 23689999999999999876655554443 456789
Q ss_pred EEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhC
Q 003878 752 RIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 752 ~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 784 (789)
+++ ++||++..... ..+++++.+.++
T Consensus 209 ~~f-dGgHFfl~~~~------~~v~~~i~~~l~ 234 (244)
T COG3208 209 RVF-DGGHFFLNQQR------EEVLARLEQHLA 234 (244)
T ss_pred EEe-cCcceehhhhH------HHHHHHHHHHhh
Confidence 998 57899864332 345556655554
No 221
>PRK10115 protease 2; Provisional
Probab=98.07 E-value=0.0033 Score=74.96 Aligned_cols=256 Identities=8% Similarity=-0.052 Sum_probs=140.3
Q ss_pred eEeCCEEEEEEEcCCCCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCC-ceEEEEEEEEc
Q 003878 87 FKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSG-SDWATIKLMRI 165 (789)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g-~~~~~i~v~dl 165 (789)
.++|+++.|....++.++..|++++..+++ +|.+. +.. .. ..++|++||+.|.|+....+ ....++|..++
T Consensus 135 Spdg~~la~~~d~~G~E~~~l~v~d~~tg~--~l~~~--i~~---~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l 206 (686)
T PRK10115 135 TPDNTIMALAEDFLSRRQYGIRFRNLETGN--WYPEL--LDN---VE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI 206 (686)
T ss_pred CCCCCEEEEEecCCCcEEEEEEEEECCCCC--CCCcc--ccC---cc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence 457888999998888888899998865553 22111 111 11 45889999999999987433 24478999999
Q ss_pred CCCceecccc-cccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEe
Q 003878 166 EDQIVEADAL-SWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTH 244 (789)
Q Consensus 166 ~tg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wsp 244 (789)
.|+......+ +.. ++ .+.-..|.+
T Consensus 207 gt~~~~d~lv~~e~----------------------~~---------------------------------~~~~~~~~s 231 (686)
T PRK10115 207 GTPASQDELVYEEK----------------------DD---------------------------------TFYVSLHKT 231 (686)
T ss_pred CCChhHCeEEEeeC----------------------CC---------------------------------CEEEEEEEc
Confidence 9983211111 110 00 011123444
Q ss_pred -CCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCC
Q 003878 245 -DSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCD 323 (789)
Q Consensus 245 -Dg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~ 323 (789)
|++.+++..... ....+++........+...+...+.+..+ .+ ...+..+++.++.+ .
T Consensus 232 ~d~~~l~i~~~~~----------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~ly~~tn~~-~ 290 (686)
T PRK10115 232 TSKHYVVIHLASA----------------TTSEVLLLDAELADAEPFVFLPRRKDHEY--SL--DHYQHRFYLRSNRH-G 290 (686)
T ss_pred CCCCEEEEEEECC----------------ccccEEEEECcCCCCCceEEEECCCCCEE--EE--EeCCCEEEEEEcCC-C
Confidence 888887554322 22346666643322233344444333222 12 23456666666543 3
Q ss_pred CceEEEEEECCCCCCCcccccccCCCCccEeeeccc-cceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEecc
Q 003878 324 PVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF-DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIP 402 (789)
Q Consensus 324 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~ 402 (789)
.+..|..+++.+ + ..+..++... +.....+...+++|++..+.+ ...+|+.+++.++. ...+.-
T Consensus 291 ~~~~l~~~~~~~-~------------~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~-g~~~l~~~~~~~~~-~~~l~~ 355 (686)
T PRK10115 291 KNFGLYRTRVRD-E------------QQWEELIPPRENIMLEGFTLFTDWLVVEERQR-GLTSLRQINRKTRE-VIGIAF 355 (686)
T ss_pred CCceEEEecCCC-c------------ccCeEEECCCCCCEEEEEEEECCEEEEEEEeC-CEEEEEEEcCCCCc-eEEecC
Confidence 356787777763 1 1144444432 112222333467888887765 46789999986544 444431
Q ss_pred CCCCceeeeEEEe--cC-CEEEEEEEeC-CeEEEEEEECCCCce
Q 003878 403 EAERDVLESATAV--NL-NQMIVSYLSD-VKYVLQIRDLKNGSL 442 (789)
Q Consensus 403 ~~~~~~i~~v~~~--~~-~~lv~~~~~~-g~~~L~~~dl~tG~~ 442 (789)
..+ ..+..+..+ .+ +.+++....- ....++.+|+++++.
T Consensus 356 ~~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~ 398 (686)
T PRK10115 356 DDP-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGER 398 (686)
T ss_pred CCC-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcE
Confidence 211 222222232 21 4555555443 356999999987653
No 222
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.07 E-value=0.00015 Score=78.04 Aligned_cols=200 Identities=16% Similarity=0.095 Sum_probs=107.8
Q ss_pred CCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccc
Q 003878 128 DDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLY 207 (789)
Q Consensus 128 ~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 207 (789)
+++.+.+....|.|+.+....+.++.| ++++||+..-..-...|... + ..++
T Consensus 265 KGHia~lt~g~whP~~k~~FlT~s~Dg----tlRiWdv~~~k~q~qVik~k-----------------~---~~g~---- 316 (641)
T KOG0772|consen 265 KGHIAELTCGCWHPDNKEEFLTCSYDG----TLRIWDVNNTKSQLQVIKTK-----------------P---AGGK---- 316 (641)
T ss_pred CCceeeeeccccccCcccceEEecCCC----cEEEEecCCchhheeEEeec-----------------c---CCCc----
Confidence 455677888899999999888777666 79999987543111111111 0 0000
Q ss_pred cccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCC
Q 003878 208 LRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQS 287 (789)
Q Consensus 208 ~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~ 287 (789)
+....+-+|+|||+.|+-...+. .|..|+.+.-..
T Consensus 317 --------------------------Rv~~tsC~~nrdg~~iAagc~DG-------------------SIQ~W~~~~~~v 351 (641)
T KOG0772|consen 317 --------------------------RVPVTSCAWNRDGKLIAAGCLDG-------------------SIQIWDKGSRTV 351 (641)
T ss_pred --------------------------ccCceeeecCCCcchhhhcccCC-------------------ceeeeecCCccc
Confidence 11246789999999987544332 255556554333
Q ss_pred CcEEEEecCC-CCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEE
Q 003878 288 EDILCWKDPE-HPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVI 366 (789)
Q Consensus 288 ~~~~~~~~~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 366 (789)
.....+.... ....+.++.||+||++|+-... ...+.+||+..-+.- ...+.-+...+......|
T Consensus 352 ~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~-----D~tLKvWDLrq~kkp---------L~~~tgL~t~~~~tdc~F 417 (641)
T KOG0772|consen 352 RPVMKVKDAHLPGQDITSISFSYDGNYLLSRGF-----DDTLKVWDLRQFKKP---------LNVRTGLPTPFPGTDCCF 417 (641)
T ss_pred ccceEeeeccCCCCceeEEEeccccchhhhccC-----CCceeeeeccccccc---------hhhhcCCCccCCCCcccc
Confidence 3322222221 1224678999999999985433 344778888763200 011222222333334568
Q ss_pred ecCCCEEEEEECC--CCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEec
Q 003878 367 ANDDTVFTFLTNK--DAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN 416 (789)
Q Consensus 367 s~dG~~l~~~tn~--~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~ 416 (789)
|||.+.|+--+.. +...+.|+.+|..+-+....+.-. ...+-.+.|.+
T Consensus 418 SPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~--~aSvv~~~Whp 467 (641)
T KOG0772|consen 418 SPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS--TASVVRCLWHP 467 (641)
T ss_pred CCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC--CceEEEEeecc
Confidence 9986544322221 223356888876654422222111 24455566665
No 223
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=98.06 E-value=2.6e-05 Score=86.29 Aligned_cols=113 Identities=9% Similarity=-0.060 Sum_probs=75.9
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHH-HHHHc-CCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcC
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRT-ILMRH-LGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAG 613 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~-~~l~~-~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~ 613 (789)
...|++|++||..+......|..... .++.. ..+.|+++|.+|++.... ..+. .+-...-+++.+.+++|.+..
T Consensus 39 ~~~ptvIlIHG~~~s~~~~~w~~~l~~al~~~~~d~nVI~VDw~g~g~s~y--~~a~--~~t~~vg~~la~lI~~L~~~~ 114 (442)
T TIGR03230 39 HETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLSRAQQHY--PTSA--AYTKLVGKDVAKFVNWMQEEF 114 (442)
T ss_pred CCCCeEEEECCCCcCCcchhhHHHHHHHHHhccCCCEEEEEECCCcCCCCC--cccc--ccHHHHHHHHHHHHHHHHHhh
Confidence 45689999999655332233444332 34432 269999999998764321 1111 111112245666777777553
Q ss_pred CCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 614 YTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 614 ~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
..+.+++.++|||+||.+++.++.+.|++++.++...|.
T Consensus 115 gl~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPA 153 (442)
T TIGR03230 115 NYPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPA 153 (442)
T ss_pred CCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCC
Confidence 357889999999999999999999999999999987764
No 224
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=98.05 E-value=0.00045 Score=63.83 Aligned_cols=166 Identities=14% Similarity=0.094 Sum_probs=96.8
Q ss_pred ccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeec--CCCCCChhHHhcccccCCcchHHH-HHHHHHHHHHcCC
Q 003878 538 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIR--GGGEYGEEWHKGGALAKKQNCFDD-FISASEYLISAGY 614 (789)
Q Consensus 538 ~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~R--G~g~~g~~~~~~~~~~~~~~~~~D-~~~~~~~L~~~~~ 614 (789)
.-+||+.||......++.... ....|+.+|+.|+.+++. -.--+|+ -+......+.++ .+.++..|.+.
T Consensus 14 ~~tilLaHGAGasmdSt~m~~-~a~~la~~G~~vaRfefpYma~Rrtg~-----rkPp~~~~t~~~~~~~~~aql~~~-- 85 (213)
T COG3571 14 PVTILLAHGAGASMDSTSMTA-VAAALARRGWLVARFEFPYMAARRTGR-----RKPPPGSGTLNPEYIVAIAQLRAG-- 85 (213)
T ss_pred CEEEEEecCCCCCCCCHHHHH-HHHHHHhCceeEEEeecchhhhccccC-----CCCcCccccCCHHHHHHHHHHHhc--
Confidence 346788899766555544443 344555599999999853 1111110 011222233333 34455555554
Q ss_pred CCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEe-cCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCC
Q 003878 615 TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALA-HVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVR 693 (789)
Q Consensus 615 ~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~-~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~ 693 (789)
.+...+++.|.||||-++.+++..----+.+.+| .+||.- -|.|+... ..++.
T Consensus 86 l~~gpLi~GGkSmGGR~aSmvade~~A~i~~L~clgYPfhp----------------pGKPe~~R----------t~HL~ 139 (213)
T COG3571 86 LAEGPLIIGGKSMGGRVASMVADELQAPIDGLVCLGYPFHP----------------PGKPEQLR----------TEHLT 139 (213)
T ss_pred ccCCceeeccccccchHHHHHHHhhcCCcceEEEecCccCC----------------CCCcccch----------hhhcc
Confidence 3456899999999999988877542111333333 233221 13343221 14555
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCC
Q 003878 694 RPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVG 762 (789)
Q Consensus 694 ~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~ 762 (789)
.+ .+|+||++|+.|..=.-.+...+ .. ..+++++...++.|...
T Consensus 140 gl----------~tPtli~qGtrD~fGtr~~Va~y-----~l----------s~~iev~wl~~adHDLk 183 (213)
T COG3571 140 GL----------KTPTLITQGTRDEFGTRDEVAGY-----AL----------SDPIEVVWLEDADHDLK 183 (213)
T ss_pred CC----------CCCeEEeecccccccCHHHHHhh-----hc----------CCceEEEEeccCccccc
Confidence 55 78999999999988665554221 12 56889999999999754
No 225
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=98.04 E-value=0.00028 Score=74.65 Aligned_cols=124 Identities=13% Similarity=0.048 Sum_probs=77.6
Q ss_pred EEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChh--HHhccc-----cc
Q 003878 521 KIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEE--WHKGGA-----LA 593 (789)
Q Consensus 521 ~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~--~~~~~~-----~~ 593 (789)
+....++.|+.. .....|+.|+..|................++. .|+..++....=.|..-+. +..... ..
T Consensus 76 ~a~~~~~~P~~~-~~~~rp~~IhLagTGDh~f~rR~~l~a~pLl~-~gi~s~~le~Pyyg~RkP~~Q~~s~l~~VsDl~~ 153 (348)
T PF09752_consen 76 TARFQLLLPKRW-DSPYRPVCIHLAGTGDHGFWRRRRLMARPLLK-EGIASLILENPYYGQRKPKDQRRSSLRNVSDLFV 153 (348)
T ss_pred heEEEEEECCcc-ccCCCceEEEecCCCccchhhhhhhhhhHHHH-cCcceEEEecccccccChhHhhcccccchhHHHH
Confidence 445667788875 23568999999886443322222222346676 6998888763322211111 111000 01
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEec
Q 003878 594 KKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAH 649 (789)
Q Consensus 594 ~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~ 649 (789)
.+...+.+..+.+.||.++|+. ++++.|.||||.+|..+++..|.-..++-+.
T Consensus 154 ~g~~~i~E~~~Ll~Wl~~~G~~---~~g~~G~SmGG~~A~laa~~~p~pv~~vp~l 206 (348)
T PF09752_consen 154 MGRATILESRALLHWLEREGYG---PLGLTGISMGGHMAALAASNWPRPVALVPCL 206 (348)
T ss_pred HHhHHHHHHHHHHHHHHhcCCC---ceEEEEechhHhhHHhhhhcCCCceeEEEee
Confidence 1233456777889999999874 8999999999999999999999865544433
No 226
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=98.04 E-value=0.003 Score=63.38 Aligned_cols=159 Identities=16% Similarity=0.194 Sum_probs=86.1
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
..+++|||.|+.|+-..++. .+.++.-..+.=+-+.+.+++++. +-.++||++|.+|+-
T Consensus 64 VRsvAwsp~g~~La~aSFD~-------------------t~~Iw~k~~~efecv~~lEGHEnE--VK~Vaws~sG~~LAT 122 (312)
T KOG0645|consen 64 VRSVAWSPHGRYLASASFDA-------------------TVVIWKKEDGEFECVATLEGHENE--VKCVAWSASGNYLAT 122 (312)
T ss_pred eeeeeecCCCcEEEEeeccc-------------------eEEEeecCCCceeEEeeeeccccc--eeEEEEcCCCCEEEE
Confidence 57999999999998877764 222332222222224445665543 457899999999997
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND 396 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~ 396 (789)
.+.+ ..+|++.++.+. +.+.. ..+...+. +.....|.|..+ |++....+ ..-++|+-+. +..
T Consensus 123 CSRD-----KSVWiWe~dedd-Efec~------aVL~~Htq--DVK~V~WHPt~d-lL~S~SYD-nTIk~~~~~~--ddd 184 (312)
T KOG0645|consen 123 CSRD-----KSVWIWEIDEDD-EFECI------AVLQEHTQ--DVKHVIWHPTED-LLFSCSYD-NTIKVYRDED--DDD 184 (312)
T ss_pred eeCC-----CeEEEEEecCCC-cEEEE------eeeccccc--cccEEEEcCCcc-eeEEeccC-CeEEEEeecC--CCC
Confidence 7643 348888776421 11100 00111111 122345777443 45544433 2344554433 333
Q ss_pred eEEeccCCC-CceeeeEEEecCCEEEEEEEeCCeEEEEE
Q 003878 397 WFEVIPEAE-RDVLESATAVNLNQMIVSYLSDVKYVLQI 434 (789)
Q Consensus 397 ~~~l~~~~~-~~~i~~v~~~~~~~lv~~~~~~g~~~L~~ 434 (789)
|..+-.-.. ...+-.+++.+.+.-+++.++++.-.|+.
T Consensus 185 W~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 185 WECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred eeEEEEecCccceEEEEEecCCCceEEEecCCcceEeee
Confidence 554332221 23566677777555667788887556655
No 227
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.04 E-value=0.00051 Score=75.50 Aligned_cols=81 Identities=14% Similarity=0.024 Sum_probs=45.4
Q ss_pred EecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCC-EEEEEEEeCCeEEEEEEECCCCceee
Q 003878 366 IANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLN-QMIVSYLSDVKYVLQIRDLKNGSLLH 444 (789)
Q Consensus 366 ~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~-~lv~~~~~~g~~~L~~~dl~tG~~~~ 444 (789)
.+||++++++-+..+.....|.++|.++.+....+.+ .....+-.+.+++++ .++++.. +....|.++|.+|.+.+.
T Consensus 276 thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~-~~~~~~~h~ef~~dG~~v~vS~~-~~~~~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 276 THPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITP-GPGKRVVHMEFNPDGKEVWVSVW-DGNGAIVVYDAKTLKEKK 353 (369)
T ss_dssp --TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHH-HHT--EEEEEE-TTSSEEEEEEE---TTEEEEEETTTTEEEE
T ss_pred cCCCCccEEeeccCCCCCceEEEEECcCcceeEEEec-cCCCcEeccEECCCCCEEEEEEe-cCCCEEEEEECCCcEEEE
Confidence 5789998887644433467899999887642223322 222235677888864 4555444 433389999999888777
Q ss_pred eccc
Q 003878 445 QLPI 448 (789)
Q Consensus 445 ~l~~ 448 (789)
+++.
T Consensus 354 ~i~~ 357 (369)
T PF02239_consen 354 RIPV 357 (369)
T ss_dssp EEE-
T ss_pred EEEe
Confidence 7663
No 228
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.03 E-value=0.0023 Score=73.83 Aligned_cols=235 Identities=10% Similarity=0.059 Sum_probs=138.2
Q ss_pred cEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccc
Q 003878 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRG 210 (789)
Q Consensus 131 ~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 210 (789)
+..+..+.+.|||+.| ++....| .|++|+.-+-...|+.|... ++..+|+.
T Consensus 13 t~G~t~i~~d~~gefi-~tcgsdg----~ir~~~~~sd~e~P~ti~~~-----------------------g~~v~~ia- 63 (933)
T KOG1274|consen 13 TGGLTLICYDPDGEFI-CTCGSDG----DIRKWKTNSDEEEPETIDIS-----------------------GELVSSIA- 63 (933)
T ss_pred cCceEEEEEcCCCCEE-EEecCCC----ceEEeecCCcccCCchhhcc-----------------------CceeEEEe-
Confidence 3346678899999944 4554444 68888876654455444421 00011111
Q ss_pred ceeeEEEeeeccccceeeeeeec--------c--cccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEE
Q 003878 211 IFFFFYLFSLVKSTIYSFWSVVS--------Q--FKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYH 280 (789)
Q Consensus 211 ~~~~~~~~~s~~~g~~~l~~~~~--------~--~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 280 (789)
-+...+.++.++++.++|..+- + +.....+++.+|+.++....+ ..|.+.
T Consensus 64 -~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD-------------------~~vK~~ 123 (933)
T KOG1274|consen 64 -CYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDD-------------------TAVKLL 123 (933)
T ss_pred -ecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCc-------------------eeEEEE
Confidence 0122355667888889998876 2 223567899999999876433 236666
Q ss_pred ECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec--c
Q 003878 281 FLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID--G 358 (789)
Q Consensus 281 ~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~--~ 358 (789)
++.+.. .+.++...+.+ +..+.++|.|..|+..+-+ ..|+++++.++... ..+..+.. +
T Consensus 124 ~~~D~s--~~~~lrgh~ap--Vl~l~~~p~~~fLAvss~d-----G~v~iw~~~~~~~~----------~tl~~v~k~n~ 184 (933)
T KOG1274|consen 124 NLDDSS--QEKVLRGHDAP--VLQLSYDPKGNFLAVSSCD-----GKVQIWDLQDGILS----------KTLTGVDKDNE 184 (933)
T ss_pred eccccc--hheeecccCCc--eeeeeEcCCCCEEEEEecC-----ceEEEEEcccchhh----------hhcccCCcccc
Confidence 665433 33444444433 5678999999999987754 44889999875311 00111111 1
Q ss_pred cc----ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEE
Q 003878 359 FD----AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQI 434 (789)
Q Consensus 359 ~~----~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~ 434 (789)
+. ...+.|+|+|.+|++..-+ ..|..++.++.+....+.+......+..++|++++..++...-++ +|.+
T Consensus 185 ~~~s~i~~~~aW~Pk~g~la~~~~d----~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g--~I~v 258 (933)
T KOG1274|consen 185 FILSRICTRLAWHPKGGTLAVPPVD----NTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDG--QILV 258 (933)
T ss_pred ccccceeeeeeecCCCCeEEeeccC----CeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCC--cEEE
Confidence 11 1225699998888876543 346666666543222333333233477788998655555555555 7889
Q ss_pred EECCC
Q 003878 435 RDLKN 439 (789)
Q Consensus 435 ~dl~t 439 (789)
||.++
T Consensus 259 Wnv~t 263 (933)
T KOG1274|consen 259 WNVDT 263 (933)
T ss_pred Eeccc
Confidence 99874
No 229
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.03 E-value=0.00027 Score=79.85 Aligned_cols=84 Identities=17% Similarity=0.115 Sum_probs=59.4
Q ss_pred HHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHH----HHHHHHHHcCCCCCCcEEEEeeChHHHHHHH-
Q 003878 560 RTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFI----SASEYLISAGYTQSRKLCIEGGSNGGLLVGA- 634 (789)
Q Consensus 560 ~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~----~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~- 634 (789)
+..+|.++|+.|++++.|.-+... ...+++|.+ +|++.+.+. +...+|-++|+|+||.+++.
T Consensus 239 lVr~lv~qG~~VflIsW~nP~~~~-----------r~~~ldDYv~~i~~Ald~V~~~--tG~~~vnl~GyC~GGtl~a~~ 305 (560)
T TIGR01839 239 FVQYCLKNQLQVFIISWRNPDKAH-----------REWGLSTYVDALKEAVDAVRAI--TGSRDLNLLGACAGGLTCAAL 305 (560)
T ss_pred HHHHHHHcCCeEEEEeCCCCChhh-----------cCCCHHHHHHHHHHHHHHHHHh--cCCCCeeEEEECcchHHHHHH
Confidence 345555599999999998744321 223344444 455555443 55679999999999999886
Q ss_pred ---HHHhCCC-ceeEEEecCCccccc
Q 003878 635 ---CINQRPD-LFGCALAHVGVMDML 656 (789)
Q Consensus 635 ---~~~~~pd-~f~a~v~~~p~~d~~ 656 (789)
+++++++ +++.++..+..+|+.
T Consensus 306 ~a~~aA~~~~~~V~sltllatplDf~ 331 (560)
T TIGR01839 306 VGHLQALGQLRKVNSLTYLVSLLDST 331 (560)
T ss_pred HHHHHhcCCCCceeeEEeeecccccC
Confidence 6777786 799998887777753
No 230
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.01 E-value=0.00016 Score=76.95 Aligned_cols=199 Identities=14% Similarity=0.108 Sum_probs=120.5
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceec-ccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA-DALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
.+..+.+|||+++||++-. ..-|.+.-..|++.+. ..+++.
T Consensus 305 ~~e~FeVShd~~fia~~G~-----~G~I~lLhakT~eli~s~KieG~--------------------------------- 346 (514)
T KOG2055|consen 305 SMERFEVSHDSNFIAIAGN-----NGHIHLLHAKTKELITSFKIEGV--------------------------------- 346 (514)
T ss_pred hhheeEecCCCCeEEEccc-----CceEEeehhhhhhhhheeeeccE---------------------------------
Confidence 4678899999999997532 4579999999987543 223332
Q ss_pred eeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEE
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL 291 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~ 291 (789)
...++||.||+.|+.+.. ..+||.+++++.... -
T Consensus 347 -------------------------v~~~~fsSdsk~l~~~~~-------------------~GeV~v~nl~~~~~~--~ 380 (514)
T KOG2055|consen 347 -------------------------VSDFTFSSDSKELLASGG-------------------TGEVYVWNLRQNSCL--H 380 (514)
T ss_pred -------------------------EeeEEEecCCcEEEEEcC-------------------CceEEEEecCCcceE--E
Confidence 588999999999887632 227999999876332 2
Q ss_pred EEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccE---eeeccccceeEEEec
Q 003878 292 CWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFV---KLIDGFDAQYEVIAN 368 (789)
Q Consensus 292 ~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~s~ 368 (789)
.|... ...+..+++.|++|+|++..+..+- |=++|..+--.. ..++|.. .++.. ...-.|+|
T Consensus 381 rf~D~-G~v~gts~~~S~ng~ylA~GS~~Gi-----VNIYd~~s~~~s-------~~PkPik~~dNLtt~--Itsl~Fn~ 445 (514)
T KOG2055|consen 381 RFVDD-GSVHGTSLCISLNGSYLATGSDSGI-----VNIYDGNSCFAS-------TNPKPIKTVDNLTTA--ITSLQFNH 445 (514)
T ss_pred EEeec-CccceeeeeecCCCceEEeccCcce-----EEEeccchhhcc-------CCCCchhhhhhhhee--eeeeeeCc
Confidence 33332 2334457889999999988764332 334443321000 0122222 22221 12234899
Q ss_pred CCCEEEEEECCCCCCceEEEEECCCCC---CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEE
Q 003878 369 DDTVFTFLTNKDAPKYKIIRVDLKEPN---DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQI 434 (789)
Q Consensus 369 dG~~l~~~tn~~~~~~~L~~~dl~~~~---~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~ 434 (789)
|++.|++.++......+|+-+ .+.. +|-+. ..+-..+..+++++++..++.+.+.|+..||.
T Consensus 446 d~qiLAiaS~~~knalrLVHv--PS~TVFsNfP~~--n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 446 DAQILAIASRVKKNALRLVHV--PSCTVFSNFPTS--NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred chhhhhhhhhccccceEEEec--cceeeeccCCCC--CCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 999999988764434455544 3322 22111 12224467788888667777788888555543
No 231
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=98.00 E-value=0.0002 Score=70.60 Aligned_cols=198 Identities=14% Similarity=0.162 Sum_probs=127.8
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
.-+..+++|.|.++|. .|+-..-++|+|+..-+.-+..+.+. .|
T Consensus 101 hivk~~af~~ds~~ll-----tgg~ekllrvfdln~p~App~E~~gh-------tg------------------------ 144 (334)
T KOG0278|consen 101 HIVKAVAFSQDSNYLL-----TGGQEKLLRVFDLNRPKAPPKEISGH-------TG------------------------ 144 (334)
T ss_pred heeeeEEecccchhhh-----ccchHHHhhhhhccCCCCCchhhcCC-------CC------------------------
Confidence 4577889999999987 45556689999998776555444443 11
Q ss_pred eeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEE
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL 291 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~ 291 (789)
....+.|-...+.|+-+.. ...|++|+..++.....+
T Consensus 145 ------------------------~Ir~v~wc~eD~~iLSSad-------------------d~tVRLWD~rTgt~v~sL 181 (334)
T KOG0278|consen 145 ------------------------GIRTVLWCHEDKCILSSAD-------------------DKTVRLWDHRTGTEVQSL 181 (334)
T ss_pred ------------------------cceeEEEeccCceEEeecc-------------------CCceEEEEeccCcEEEEE
Confidence 1467788888888875432 235889999887655544
Q ss_pred EEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCC
Q 003878 292 CWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDT 371 (789)
Q Consensus 292 ~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~ 371 (789)
-+..+ +.++..|+||++|.+.-. +.|-.+|..+.. . ++...-.....-...+|+.
T Consensus 182 ~~~s~-----VtSlEvs~dG~ilTia~g------ssV~Fwdaksf~----~---------lKs~k~P~nV~SASL~P~k- 236 (334)
T KOG0278|consen 182 EFNSP-----VTSLEVSQDGRILTIAYG------SSVKFWDAKSFG----L---------LKSYKMPCNVESASLHPKK- 236 (334)
T ss_pred ecCCC-----CcceeeccCCCEEEEecC------ceeEEecccccc----c---------eeeccCccccccccccCCC-
Confidence 44332 347889999999976531 336677776521 0 1110001111223367765
Q ss_pred EEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEEC
Q 003878 372 VFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDL 437 (789)
Q Consensus 372 ~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl 437 (789)
.+++.. +..+.++++|..++++... .-......+-.+.+++++.+|++.++||.-+||....
T Consensus 237 ~~fVaG---ged~~~~kfDy~TgeEi~~-~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 237 EFFVAG---GEDFKVYKFDYNTGEEIGS-YNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred ceEEec---CcceEEEEEeccCCceeee-cccCCCCceEEEEECCCCceeeccCCCceEEEEEecC
Confidence 566543 4468999999999873322 1122345678899999889999999999666666554
No 232
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.00 E-value=0.00046 Score=70.62 Aligned_cols=93 Identities=13% Similarity=0.083 Sum_probs=56.7
Q ss_pred EEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECCCCcee
Q 003878 365 VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLL 443 (789)
Q Consensus 365 ~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~~~ 443 (789)
.|++|..++. +.|..-+ ..|+.+|+...+ ...++-+. ..|..+.|.++ -+|++.. |.++||.|.+. |-..
T Consensus 325 afs~Ds~y~a-Trnd~~P-nalW~Wdlq~l~-l~avLiQk--~piraf~WdP~~prL~vct---g~srLY~W~ps-g~~~ 395 (447)
T KOG4497|consen 325 AFSCDSTYAA-TRNDKYP-NALWLWDLQNLK-LHAVLIQK--HPIRAFEWDPGRPRLVVCT---GKSRLYFWAPS-GPRV 395 (447)
T ss_pred eecCCceEEe-eecCCCC-ceEEEEechhhh-hhhhhhhc--cceeEEEeCCCCceEEEEc---CCceEEEEcCC-CceE
Confidence 5888765544 4444445 479999998765 33333333 45778889884 3455543 44689999997 6433
Q ss_pred eecccCCeeEEEeecccCCcEEE
Q 003878 444 HQLPIEIGSVNAISARREDSVVF 466 (789)
Q Consensus 444 ~~l~~~~~~v~~~s~s~d~~~l~ 466 (789)
-.++.+...|..+.+.-+|+-++
T Consensus 396 V~vP~~GF~i~~l~W~~~g~~i~ 418 (447)
T KOG4497|consen 396 VGVPKKGFNIQKLQWLQPGEFIV 418 (447)
T ss_pred EecCCCCceeeeEEecCCCcEEE
Confidence 34444445566666666665443
No 233
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=97.99 E-value=0.0022 Score=69.74 Aligned_cols=167 Identities=12% Similarity=0.006 Sum_probs=81.4
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCC----cEEE-EecCCCCeeEEEEEEecCCc
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSE----DILC-WKDPEHPKYIFSGHVTEDGQ 312 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~----~~~~-~~~~~~~~~~~~~~~SpDG~ 312 (789)
..++++|||+.++.... ....|+++++.+...- ...+ ......+ ..+.++|||+
T Consensus 129 ~~~~~~p~g~~l~v~~~------------------~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p---~~~~~~pdg~ 187 (330)
T PRK11028 129 HSANIDPDNRTLWVPCL------------------KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGP---RHMVFHPNQQ 187 (330)
T ss_pred cEeEeCCCCCEEEEeeC------------------CCCEEEEEEECCCCcccccCCCceecCCCCCC---ceEEECCCCC
Confidence 56789999999987632 2346888888652210 0000 1111122 3578999999
Q ss_pred EEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeee---ccc-ccee---EEEecCCCEEEEEECCCCCCce
Q 003878 313 YLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI---DGF-DAQY---EVIANDDTVFTFLTNKDAPKYK 385 (789)
Q Consensus 313 ~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~---~~~-~~~~---~~~s~dG~~l~~~tn~~~~~~~ 385 (789)
+++..... .+.|.+++++.....+ .....+. ... ...+ ..++|||+++|+ +++.. ..
T Consensus 188 ~lyv~~~~----~~~v~v~~~~~~~~~~---------~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv-~~~~~--~~ 251 (330)
T PRK11028 188 YAYCVNEL----NSSVDVWQLKDPHGEI---------ECVQTLDMMPADFSDTRWAADIHITPDGRHLYA-CDRTA--SL 251 (330)
T ss_pred EEEEEecC----CCEEEEEEEeCCCCCE---------EEEEEEecCCCcCCCCccceeEEECCCCCEEEE-ecCCC--Ce
Confidence 99876432 3567777775311010 0011110 000 0111 237899998886 45533 35
Q ss_pred EEEEECCCCCCeEEeccCCC-CceeeeEEEecCC-EEEEEEEeCCeEEEEEEECCCCc
Q 003878 386 IIRVDLKEPNDWFEVIPEAE-RDVLESATAVNLN-QMIVSYLSDVKYVLQIRDLKNGS 441 (789)
Q Consensus 386 L~~~dl~~~~~~~~l~~~~~-~~~i~~v~~~~~~-~lv~~~~~~g~~~L~~~dl~tG~ 441 (789)
|..++++.......++.... ......+.+++++ +|+++...++.-.++.++.++|.
T Consensus 252 I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~ 309 (330)
T PRK11028 252 ISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGL 309 (330)
T ss_pred EEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCc
Confidence 66666543220111221110 0122356777654 55555544443344444444454
No 234
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.99 E-value=0.015 Score=61.65 Aligned_cols=117 Identities=13% Similarity=0.200 Sum_probs=70.5
Q ss_pred EEEecCCCEEEEEECCCCCCceEEEEECCCCC-----CeEEeccCC--CC---ceeeeEEEec-CCEEEEEEEeC-----
Q 003878 364 EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN-----DWFEVIPEA--ER---DVLESATAVN-LNQMIVSYLSD----- 427 (789)
Q Consensus 364 ~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~-----~~~~l~~~~--~~---~~i~~v~~~~-~~~lv~~~~~~----- 427 (789)
+.++.++.+++|.|-. +.|+.+++.+.+ .|..+.... +. .-.+-+++.+ .++||+.--..
T Consensus 189 ~~~~~~~~~~~F~Sy~----G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsH 264 (342)
T PF06433_consen 189 PAYSRDGGRLYFVSYE----GNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSH 264 (342)
T ss_dssp -EEETTTTEEEEEBTT----SEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-T
T ss_pred cceECCCCeEEEEecC----CEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCc
Confidence 3456677788887653 689999987754 122121110 00 0123355654 36888765432
Q ss_pred --CeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 428 --VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 428 --g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
+-.+||++|+++++.+.+++++. .+.+++.+.|.+-++|..+. .-..++.+|..+|+
T Consensus 265 KdpgteVWv~D~~t~krv~Ri~l~~-~~~Si~Vsqd~~P~L~~~~~--~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 265 KDPGTEVWVYDLKTHKRVARIPLEH-PIDSIAVSQDDKPLLYALSA--GDGTLDVYDAATGK 323 (342)
T ss_dssp TS-EEEEEEEETTTTEEEEEEEEEE-EESEEEEESSSS-EEEEEET--TTTEEEEEETTT--
T ss_pred cCCceEEEEEECCCCeEEEEEeCCC-ccceEEEccCCCcEEEEEcC--CCCeEEEEeCcCCc
Confidence 23599999999999888888752 23356666777666666543 34689999999996
No 235
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.00061 Score=75.58 Aligned_cols=199 Identities=8% Similarity=0.043 Sum_probs=121.3
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
+.++.|+++|+.|++..... .+.++++.+.... .-+... +...+..++|. ..++.
T Consensus 220 vtSv~ws~~G~~LavG~~~g-------------------~v~iwD~~~~k~~--~~~~~~-h~~rvg~laW~---~~~ls 274 (484)
T KOG0305|consen 220 VTSVKWSPDGSHLAVGTSDG-------------------TVQIWDVKEQKKT--RTLRGS-HASRVGSLAWN---SSVLS 274 (484)
T ss_pred eEEEEECCCCCEEEEeecCC-------------------eEEEEehhhcccc--ccccCC-cCceeEEEecc---CceEE
Confidence 58999999999999875432 4677776543221 111111 34556678887 23333
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee--EEEecCCCEEEEEECCCCCCceEEEEECCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY--EVIANDDTVFTFLTNKDAPKYKIIRVDLKEP 394 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~ 394 (789)
... + ...|...|+.....- ...+ .+-..+. -.|++|+..++ .++.+..++.+|....
T Consensus 275 sGs-r---~~~I~~~dvR~~~~~------------~~~~-~~H~qeVCgLkws~d~~~lA----SGgnDN~~~Iwd~~~~ 333 (484)
T KOG0305|consen 275 SGS-R---DGKILNHDVRISQHV------------VSTL-QGHRQEVCGLKWSPDGNQLA----SGGNDNVVFIWDGLSP 333 (484)
T ss_pred Eec-C---CCcEEEEEEecchhh------------hhhh-hcccceeeeeEECCCCCeec----cCCCccceEeccCCCc
Confidence 322 2 244666676553100 1101 1111112 23999999887 3445678999998555
Q ss_pred CCeEEeccCCCCceeeeEEEec-CCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCC
Q 003878 395 NDWFEVIPEAERDVLESATAVN-LNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFL 473 (789)
Q Consensus 395 ~~~~~l~~~~~~~~i~~v~~~~-~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~ 473 (789)
+....+..+. ..+..++|.+ ...|++++..-....|.+||..+|+.+..+.- ...|..+.|++..+++..+..-..
T Consensus 334 ~p~~~~~~H~--aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~ 410 (484)
T KOG0305|consen 334 EPKFTFTEHT--AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSE 410 (484)
T ss_pred cccEEEeccc--eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCC
Confidence 4345566665 5678888887 35677776555556899999998887555542 456788999999999887664433
Q ss_pred CCcEEEEEECCCC
Q 003878 474 IPGIVYQCNLKTE 486 (789)
Q Consensus 474 ~P~~ly~~dl~tg 486 (789)
. .+.+|+..+.
T Consensus 411 n--~i~lw~~ps~ 421 (484)
T KOG0305|consen 411 N--QITLWKYPSM 421 (484)
T ss_pred C--cEEEEecccc
Confidence 3 5555555444
No 236
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=97.93 E-value=0.00022 Score=70.71 Aligned_cols=214 Identities=15% Similarity=0.166 Sum_probs=111.4
Q ss_pred ecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhccccc
Q 003878 514 PSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALA 593 (789)
Q Consensus 514 ~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~ 593 (789)
.-.+| .+|.+|--.|+... ..++|+||..-| |+..+. .|.+ .+..|..+||.|+.+|.--.=+. .+ +.
T Consensus 8 ~~~~~-~~I~vwet~P~~~~-~~~~~tiliA~G-f~rrmd-h~ag-LA~YL~~NGFhViRyDsl~HvGl-----Ss--G~ 75 (294)
T PF02273_consen 8 RLEDG-RQIRVWETRPKNNE-PKRNNTILIAPG-FARRMD-HFAG-LAEYLSANGFHVIRYDSLNHVGL-----SS--GD 75 (294)
T ss_dssp EETTT-EEEEEEEE---TTS----S-EEEEE-T-T-GGGG-GGHH-HHHHHHTTT--EEEE---B---------------
T ss_pred EcCCC-CEEEEeccCCCCCC-cccCCeEEEecc-hhHHHH-HHHH-HHHHHhhCCeEEEeccccccccC-----CC--CC
Confidence 34689 99999999999743 467788888877 554433 4444 45556669999999974311000 00 11
Q ss_pred CCcc----hHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCc----
Q 003878 594 KKQN----CFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGH---- 665 (789)
Q Consensus 594 ~~~~----~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~---- 665 (789)
-.+- .-+|+..+++||...|. .+++++-.|.-|-++..+++. ++ ..-.|..+|++|+..+..-..+.
T Consensus 76 I~eftms~g~~sL~~V~dwl~~~g~---~~~GLIAaSLSaRIAy~Va~~-i~-lsfLitaVGVVnlr~TLe~al~~Dyl~ 150 (294)
T PF02273_consen 76 INEFTMSIGKASLLTVIDWLATRGI---RRIGLIAASLSARIAYEVAAD-IN-LSFLITAVGVVNLRDTLEKALGYDYLQ 150 (294)
T ss_dssp -----HHHHHHHHHHHHHHHHHTT------EEEEEETTHHHHHHHHTTT-S---SEEEEES--S-HHHHHHHHHSS-GGG
T ss_pred hhhcchHHhHHHHHHHHHHHHhcCC---CcchhhhhhhhHHHHHHHhhc-cC-cceEEEEeeeeeHHHHHHHHhccchhh
Confidence 1111 23788899999998875 579999999999999999996 65 66777788999987654211111
Q ss_pred cchhhc-------CCCCcHHHH--HHHH-hc----CcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHH
Q 003878 666 AWVSDF-------GCSEEEEEF--YWLI-KY----SPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLAT 731 (789)
Q Consensus 666 ~~~~e~-------g~p~~~~~~--~~l~-~~----sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~ 731 (789)
.+..+. |-.-+.+.| +.++ .+ |-...++.. ..|++.+++.+|.-|-..+..++...
T Consensus 151 ~~i~~lp~dldfeGh~l~~~vFv~dc~e~~w~~l~ST~~~~k~l----------~iP~iaF~A~~D~WV~q~eV~~~~~~ 220 (294)
T PF02273_consen 151 LPIEQLPEDLDFEGHNLGAEVFVTDCFEHGWDDLDSTINDMKRL----------SIPFIAFTANDDDWVKQSEVEELLDN 220 (294)
T ss_dssp S-GGG--SEEEETTEEEEHHHHHHHHHHTT-SSHHHHHHHHTT------------S-EEEEEETT-TTS-HHHHHHHHTT
T ss_pred cchhhCCCcccccccccchHHHHHHHHHcCCccchhHHHHHhhC----------CCCEEEEEeCCCccccHHHHHHHHHh
Confidence 111111 111111111 0011 11 122334443 67999999999999988877776655
Q ss_pred HHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchh
Q 003878 732 MQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQ 766 (789)
Q Consensus 732 L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~ 766 (789)
+. ...+.++..+|++|-.+...-
T Consensus 221 ~~------------s~~~klysl~Gs~HdL~enl~ 243 (294)
T PF02273_consen 221 IN------------SNKCKLYSLPGSSHDLGENLV 243 (294)
T ss_dssp -T------------T--EEEEEETT-SS-TTSSHH
T ss_pred cC------------CCceeEEEecCccchhhhChH
Confidence 54 345788999999998875433
No 237
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.93 E-value=0.0026 Score=67.62 Aligned_cols=198 Identities=17% Similarity=0.200 Sum_probs=118.6
Q ss_pred ccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEE
Q 003878 236 KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLV 315 (789)
Q Consensus 236 ~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~ 315 (789)
+...+.++||.+.++.... ...|++|..+......... ..+.+ +..+...|.|+|++
T Consensus 263 ki~~v~~~~~~~~v~~aSa-------------------d~~i~vws~~~~s~~~~~~--~h~~~--V~~ls~h~tgeYll 319 (506)
T KOG0289|consen 263 KITSVKFHKDLDTVITASA-------------------DEIIRVWSVPLSSEPTSSR--PHEEP--VTGLSLHPTGEYLL 319 (506)
T ss_pred EEEEEEeccchhheeecCC-------------------cceEEeeccccccCccccc--ccccc--ceeeeeccCCcEEE
Confidence 3567788888777664321 2347777777654332221 11222 34677889999998
Q ss_pred EEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecc-cccee--EEEecCCCEEEEEECCCCCCceEEEEECC
Q 003878 316 MCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG-FDAQY--EVIANDDTVFTFLTNKDAPKYKIIRVDLK 392 (789)
Q Consensus 316 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~-~~~~~--~~~s~dG~~l~~~tn~~~~~~~L~~~dl~ 392 (789)
-.++++. +-.-|..++. .+.....+ .+..+ ..+.|||-. |.+ +.+++.|-.+|++
T Consensus 320 sAs~d~~-----w~Fsd~~~g~-------------~lt~vs~~~s~v~~ts~~fHpDgLi--fgt--gt~d~~vkiwdlk 377 (506)
T KOG0289|consen 320 SASNDGT-----WAFSDISSGS-------------QLTVVSDETSDVEYTSAAFHPDGLI--FGT--GTPDGVVKIWDLK 377 (506)
T ss_pred EecCCce-----EEEEEccCCc-------------EEEEEeeccccceeEEeeEcCCceE--Eec--cCCCceEEEEEcC
Confidence 7664432 3334555531 12222221 22233 347888743 333 3467889999999
Q ss_pred CCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC-CeeEEEeecccCCcEEEEEEcC
Q 003878 393 EPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAISARREDSVVFISFTS 471 (789)
Q Consensus 393 ~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~-~~~v~~~s~s~d~~~l~~~~ss 471 (789)
++.... -+|. ....+..++++.+++.++...+++ .|.+||+..-+..+.+.++ ...+..++++..|..+.+.
T Consensus 378 s~~~~a-~Fpg-ht~~vk~i~FsENGY~Lat~add~--~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~--- 450 (506)
T KOG0289|consen 378 SQTNVA-KFPG-HTGPVKAISFSENGYWLATAADDG--SVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA--- 450 (506)
T ss_pred Cccccc-cCCC-CCCceeEEEeccCceEEEEEecCC--eEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee---
Confidence 876322 3343 246789999998788888888887 4999999744444556655 2345678888888877655
Q ss_pred CCCCcEEEEEECCCC
Q 003878 472 FLIPGIVYQCNLKTE 486 (789)
Q Consensus 472 ~~~P~~ly~~dl~tg 486 (789)
.+--.+|.++-.+.
T Consensus 451 -g~~l~Vy~~~k~~k 464 (506)
T KOG0289|consen 451 -GSDLQVYICKKKTK 464 (506)
T ss_pred -cceeEEEEEecccc
Confidence 22335666664444
No 238
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=97.91 E-value=0.001 Score=72.99 Aligned_cols=102 Identities=18% Similarity=0.217 Sum_probs=65.9
Q ss_pred CCccEEEE----EcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHH
Q 003878 536 GSHPCLLY----GYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLIS 611 (789)
Q Consensus 536 ~~~P~ll~----~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~ 611 (789)
.+.|.||. +|| +|+..-.. ..+....|. .|.-|..+-+.--.+- ..+++|+..+....++
T Consensus 67 ~krP~vViDPRAGHG-pGIGGFK~-dSevG~AL~-~GHPvYFV~F~p~P~p-------------gQTl~DV~~ae~~Fv~ 130 (581)
T PF11339_consen 67 TKRPFVVIDPRAGHG-PGIGGFKP-DSEVGVALR-AGHPVYFVGFFPEPEP-------------GQTLEDVMRAEAAFVE 130 (581)
T ss_pred CCCCeEEeCCCCCCC-CCccCCCc-ccHHHHHHH-cCCCeEEEEecCCCCC-------------CCcHHHHHHHHHHHHH
Confidence 45677665 465 44433333 335566676 7988887776543332 3467777665433322
Q ss_pred c---CCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEe-cCCcc
Q 003878 612 A---GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALA-HVGVM 653 (789)
Q Consensus 612 ~---~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~-~~p~~ 653 (789)
. -.-+..|..++|.+.||..++.+++.+||++.-+|+ .+|+.
T Consensus 131 ~V~~~hp~~~kp~liGnCQgGWa~~mlAA~~Pd~~gplvlaGaPls 176 (581)
T PF11339_consen 131 EVAERHPDAPKPNLIGNCQGGWAAMMLAALRPDLVGPLVLAGAPLS 176 (581)
T ss_pred HHHHhCCCCCCceEEeccHHHHHHHHHHhcCcCccCceeecCCCcc
Confidence 1 122334999999999999999999999999877654 45544
No 239
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=0.00036 Score=76.59 Aligned_cols=222 Identities=18% Similarity=0.179 Sum_probs=124.2
Q ss_pred CCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceeccc-ccccccccccCccceeeeeeccccccccccccc
Q 003878 129 DGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA-LSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLY 207 (789)
Q Consensus 129 ~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 207 (789)
+++..+.++++.|-|.+|| +|++..+++||.+.||..+... +..
T Consensus 398 GHtg~Vr~iSvdp~G~wla-----sGsdDGtvriWEi~TgRcvr~~~~d~------------------------------ 442 (733)
T KOG0650|consen 398 GHTGLVRSISVDPSGEWLA-----SGSDDGTVRIWEIATGRCVRTVQFDS------------------------------ 442 (733)
T ss_pred ccCCeEEEEEecCCcceee-----ecCCCCcEEEEEeecceEEEEEeecc------------------------------
Confidence 4556688999999999999 7888999999999999765311 111
Q ss_pred cccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCC---CCCCCC----C--------ccccCC
Q 003878 208 LRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKE---GKDMDA----G--------TETDSN 272 (789)
Q Consensus 208 ~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~---~~~~~~----~--------~~~~~~ 272 (789)
....++|.|.++.=+......... .+.+++ + ...++.
T Consensus 443 ----------------------------~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~ 494 (733)
T KOG0650|consen 443 ----------------------------EIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESE 494 (733)
T ss_pred ----------------------------eeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccC
Confidence 147888888775422221111100 011110 0 001122
Q ss_pred cccEEEEEECCCCCCC--cE-EEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCC
Q 003878 273 LYHEFYYHFLGTKQSE--DI-LCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGL 349 (789)
Q Consensus 273 ~~~~i~~~~lg~~~~~--~~-~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~ 349 (789)
.+.++..|.-+..... .+ ++.. ++..+..+.|..+|.||+.....+. +..|++-.+..... .
T Consensus 495 p~~~~~~W~~~~~~e~~~~v~~~I~---~~k~i~~vtWHrkGDYlatV~~~~~--~~~VliHQLSK~~s----------Q 559 (733)
T KOG0650|consen 495 PDAAVVTWSRASLDELEKGVCIVIK---HPKSIRQVTWHRKGDYLATVMPDSG--NKSVLIHQLSKRKS----------Q 559 (733)
T ss_pred CcccceeechhhhhhhccceEEEEe---cCCccceeeeecCCceEEEeccCCC--cceEEEEecccccc----------c
Confidence 2334555554422111 11 2222 2334568899999999998775544 56788888876321 1
Q ss_pred CccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEec-CCEEEEEEEeCC
Q 003878 350 LPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN-LNQMIVSYLSDV 428 (789)
Q Consensus 350 ~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~-~~~lv~~~~~~g 428 (789)
.|+.+. .+. .....|.|...+|++.|.+ .|..+|+....-.+.+.+.. ..|.++++.+ ++.|++...+.
T Consensus 560 ~PF~ks-kG~-vq~v~FHPs~p~lfVaTq~-----~vRiYdL~kqelvKkL~tg~--kwiS~msihp~GDnli~gs~d~- 629 (733)
T KOG0650|consen 560 SPFRKS-KGL-VQRVKFHPSKPYLFVATQR-----SVRIYDLSKQELVKKLLTGS--KWISSMSIHPNGDNLILGSYDK- 629 (733)
T ss_pred Cchhhc-CCc-eeEEEecCCCceEEEEecc-----ceEEEehhHHHHHHHHhcCC--eeeeeeeecCCCCeEEEecCCC-
Confidence 122111 111 1223366665666665533 46666776643234455554 4577888876 36677655544
Q ss_pred eEEEEEEECCCC
Q 003878 429 KYVLQIRDLKNG 440 (789)
Q Consensus 429 ~~~L~~~dl~tG 440 (789)
++..+|++-+
T Consensus 630 --k~~WfDldls 639 (733)
T KOG0650|consen 630 --KMCWFDLDLS 639 (733)
T ss_pred --eeEEEEcccC
Confidence 6788888633
No 240
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=97.89 E-value=5.3e-05 Score=77.91 Aligned_cols=137 Identities=15% Similarity=0.137 Sum_probs=97.9
Q ss_pred EEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHh
Q 003878 509 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHK 588 (789)
Q Consensus 509 ~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~ 588 (789)
++.++++.|| -+|...++-.+........-+|+.+-|.-|.-.-.-. ..-++ .||.|+-.|..|.++.-
T Consensus 215 ~R~kiks~dg-neiDtmF~d~r~n~~~ngq~LvIC~EGNAGFYEvG~m----~tP~~-lgYsvLGwNhPGFagST----- 283 (517)
T KOG1553|consen 215 QRLKIKSSDG-NEIDTMFLDGRPNQSGNGQDLVICFEGNAGFYEVGVM----NTPAQ-LGYSVLGWNHPGFAGST----- 283 (517)
T ss_pred eEEEEeecCC-cchhheeecCCCCCCCCCceEEEEecCCccceEeeee----cChHH-hCceeeccCCCCccccC-----
Confidence 6778899999 9998777765543333344677777775332111111 12234 89999999999865421
Q ss_pred cccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccc
Q 003878 589 GGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH 659 (789)
Q Consensus 589 ~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~ 659 (789)
-.....|+..-..+++++.|..---.++.|+++|+|-||+-++++|..+|| .+|+|+.+-|-|++-..
T Consensus 284 --G~P~p~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPd-VkavvLDAtFDDllpLA 351 (517)
T KOG1553|consen 284 --GLPYPVNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPD-VKAVVLDATFDDLLPLA 351 (517)
T ss_pred --CCCCcccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCC-ceEEEeecchhhhhhHH
Confidence 123445666667788899887744477899999999999999999999998 69999999988876543
No 241
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=97.88 E-value=0.00014 Score=77.03 Aligned_cols=239 Identities=13% Similarity=0.066 Sum_probs=126.1
Q ss_pred EecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEee--cCCCCCChhHHhcc
Q 003878 513 VPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANI--RGGGEYGEEWHKGG 590 (789)
Q Consensus 513 ~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~--RG~g~~g~~~~~~~ 590 (789)
+....+ ..+...+..|++....++.|+++..||.......... ....++..++.++..+. +|....-.......
T Consensus 25 ~~~~~~-~~~~~~l~~p~~~~~~~~~p~v~~~h~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 100 (299)
T COG1073 25 LANRTG-IALAAVLHLPPSGNEEKKLPAVVFLHGFGSSKEQSLG---YAVLLAEKGYRVLAGDASLFGESGGDPRGLADS 100 (299)
T ss_pred cccccC-ceeeeEEEecCCCCccccCceEEeccCccccccCcch---HHHHhhhceeEEeeeccccccccccccccccCc
Confidence 333444 5677888888875444689999999996554433222 23455557887776654 21111110000000
Q ss_pred cccCCcchHHHHHHHHHHH---------HHcCCCCCCcEEEEeeChHHHHHHHHHHhCC---CceeEEEecCCccccccc
Q 003878 591 ALAKKQNCFDDFISASEYL---------ISAGYTQSRKLCIEGGSNGGLLVGACINQRP---DLFGCALAHVGVMDMLRY 658 (789)
Q Consensus 591 ~~~~~~~~~~D~~~~~~~L---------~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p---d~f~a~v~~~p~~d~~~~ 658 (789)
. ....++....... .........+....|.+.||..+...+...+ +..+.++...++-.....
T Consensus 101 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~g~~~~~ 175 (299)
T COG1073 101 E-----GYAEDFSAAVLLLLSEGVLDKDYRLLGASLGPRILAGLSLGGPSAGALLAWGPTRLDASRIVVWGESLGGALAL 175 (299)
T ss_pred c-----ccccccchhheeeeccccccHHHHHHhhhcCcceEEEEEeeccchHHHhhcchhHHHhhcccceeeccCceeec
Confidence 0 0001111100000 0001112357888888888888777777665 222222222221111111
Q ss_pred cccc--------CCccch------h------hcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCC
Q 003878 659 HKFT--------IGHAWV------S------DFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDD 718 (789)
Q Consensus 659 ~~~~--------~~~~~~------~------e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~ 718 (789)
.... ...... . .+..+.. . ...+..++++..+..+ ...|+|++||.+|.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~d~~~~~~~i---------~~~P~l~~~G~~D~ 244 (299)
T COG1073 176 LLLGANPELARELIDYLITPGGFAPLPAPEAPLDTLPL-R-AVLLLLLDPFDDAEKI---------SPRPVLLVHGERDE 244 (299)
T ss_pred cccccchHHHHhhhhhhccCCCCCCCCccccccccccc-c-hhhhccCcchhhHhhc---------CCcceEEEecCCCc
Confidence 0000 000000 0 0000000 1 1224555666666665 12699999999999
Q ss_pred CCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCC-chhhHHHHHHHHHHHHHHHh
Q 003878 719 RVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGL-PTQKMIDEAADRYGFMAKML 783 (789)
Q Consensus 719 ~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~-~~~~~~~~~~~~~~fl~~~l 783 (789)
.||..++.+++.+.+. .+..+.++++++|.... ......+...++..||.+++
T Consensus 245 ~vp~~~~~~~~~~~~~------------~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~~~l 298 (299)
T COG1073 245 VVPLRDAEDLYEAARE------------RPKKLLFVPGGGHIDLYDNPPAVEQALDKLAEFLERHL 298 (299)
T ss_pred ccchhhhHHHHhhhcc------------CCceEEEecCCccccccCccHHHHHHHHHHHHHHHHhc
Confidence 9999999999988764 26678888999998764 22222467788899998875
No 242
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=97.84 E-value=0.0017 Score=65.95 Aligned_cols=195 Identities=14% Similarity=0.106 Sum_probs=118.0
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
.....|+|||..|+- .+..++|++|+.-.+- +...+.. .+...+..+.|++||+.|+-
T Consensus 50 I~~~~F~P~gs~~aS-------------------gG~Dr~I~LWnv~gdc-eN~~~lk--gHsgAVM~l~~~~d~s~i~S 107 (338)
T KOG0265|consen 50 IYTIKFHPDGSCFAS-------------------GGSDRAIVLWNVYGDC-ENFWVLK--GHSGAVMELHGMRDGSHILS 107 (338)
T ss_pred EEEEEECCCCCeEee-------------------cCCcceEEEEeccccc-cceeeec--cccceeEeeeeccCCCEEEE
Confidence 567889999988873 3456789999975443 2333333 34566789999999999975
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEec--CCCEEEEEECCCCCCceEEEEECCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIAN--DDTVFTFLTNKDAPKYKIIRVDLKEP 394 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~--dG~~l~~~tn~~~~~~~L~~~dl~~~ 394 (789)
... ...++.+|+++|.. ..+...... ......| -|..++. + ..++..+.++|+.+.
T Consensus 108 ~gt-----Dk~v~~wD~~tG~~-------------~rk~k~h~~-~vNs~~p~rrg~~lv~-S--gsdD~t~kl~D~R~k 165 (338)
T KOG0265|consen 108 CGT-----DKTVRGWDAETGKR-------------IRKHKGHTS-FVNSLDPSRRGPQLVC-S--GSDDGTLKLWDIRKK 165 (338)
T ss_pred ecC-----CceEEEEeccccee-------------eehhccccc-eeeecCccccCCeEEE-e--cCCCceEEEEeeccc
Confidence 543 35699999998631 111111111 1111223 2433332 2 234678888998765
Q ss_pred CCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCC
Q 003878 395 NDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLI 474 (789)
Q Consensus 395 ~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~ 474 (789)
+..+ .+ +. ...+.++.|.....-+++..-|+ .|.+||+..+.....+......|.+++.++++..+. |-..
T Consensus 166 ~~~~-t~-~~-kyqltAv~f~d~s~qv~sggIdn--~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~ll----snsM 236 (338)
T KOG0265|consen 166 EAIK-TF-EN-KYQLTAVGFKDTSDQVISGGIDN--DIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLL----SNSM 236 (338)
T ss_pred chhh-cc-cc-ceeEEEEEecccccceeeccccC--ceeeeccccCcceEEeecccCceeeEEeccCCCccc----cccc
Confidence 5222 22 22 24577888775433444444443 789999965555456665667788899899887544 2234
Q ss_pred CcEEEEEECC
Q 003878 475 PGIVYQCNLK 484 (789)
Q Consensus 475 P~~ly~~dl~ 484 (789)
-.++.++|..
T Consensus 237 d~tvrvwd~r 246 (338)
T KOG0265|consen 237 DNTVRVWDVR 246 (338)
T ss_pred cceEEEEEec
Confidence 4567777764
No 243
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=97.84 E-value=4.6e-05 Score=77.15 Aligned_cols=168 Identities=18% Similarity=0.105 Sum_probs=77.6
Q ss_pred CccEEEEEcCCCCccCCCCCCH---HHHHHHHcCCeEEEEEeec--C--CC----------------CCChhHHhccccc
Q 003878 537 SHPCLLYGYGGFNISVTPSFSV---SRTILMRHLGAVFCIANIR--G--GG----------------EYGEEWHKGGALA 593 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~~~~~~~---~~~~~l~~~G~~v~~~~~R--G--~g----------------~~g~~~~~~~~~~ 593 (789)
+.|-||.+||...+.. .|.. .+...|.+.++-++.+|-. - +. +-...|......
T Consensus 3 ~k~riLcLHG~~~na~--if~~q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~- 79 (212)
T PF03959_consen 3 RKPRILCLHGYGQNAE--IFRQQTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDD- 79 (212)
T ss_dssp ---EEEEE--TT--HH--HHHHHTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S--
T ss_pred CCceEEEeCCCCcCHH--HHHHHHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCC-
Confidence 4578999999644321 2221 2344555227777777632 1 11 112234433221
Q ss_pred CCcchHHHHHHHHHHHH----HcCCCCCCcEEEEeeChHHHHHHHHHHhC--------CCceeEEEecCCcccccccccc
Q 003878 594 KKQNCFDDFISASEYLI----SAGYTQSRKLCIEGGSNGGLLVGACINQR--------PDLFGCALAHVGVMDMLRYHKF 661 (789)
Q Consensus 594 ~~~~~~~D~~~~~~~L~----~~~~~d~~~i~i~G~S~GG~l~~~~~~~~--------pd~f~a~v~~~p~~d~~~~~~~ 661 (789)
.....++..++++|. ++|- =.+|+|+|.||.+++.++.+. .-.|+.+|+.+++.-....
T Consensus 80 --~~~~~~~~~sl~~l~~~i~~~GP----fdGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~~~~--- 150 (212)
T PF03959_consen 80 --DHEYEGLDESLDYLRDYIEENGP----FDGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPPDPD--- 150 (212)
T ss_dssp --SGGG---HHHHHHHHHHHHHH-------SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----EEE----
T ss_pred --cccccCHHHHHHHHHHHHHhcCC----eEEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCCchh---
Confidence 223444445544444 3332 479999999999998877531 1247888877775431110
Q ss_pred cCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCC
Q 003878 662 TIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLE 741 (789)
Q Consensus 662 ~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~ 741 (789)
+.+...... ...|+|.++|.+|..+++..+.++++....
T Consensus 151 ------------------------~~~~~~~~~----------i~iPtlHv~G~~D~~~~~~~s~~L~~~~~~------- 189 (212)
T PF03959_consen 151 ------------------------YQELYDEPK----------ISIPTLHVIGENDPVVPPERSEALAEMFDP------- 189 (212)
T ss_dssp ------------------------GTTTT--TT-------------EEEEEEETT-SSS-HHHHHHHHHHHHH-------
T ss_pred ------------------------hhhhhcccc----------CCCCeEEEEeCCCCCcchHHHHHHHHhccC-------
Confidence 111111111 257999999999999999999999888775
Q ss_pred CCCCCCcEEEEEeCCCCcCCCCc
Q 003878 742 NSPQTNPIIGRIERKAGHGVGLP 764 (789)
Q Consensus 742 ~~~~~~~~~l~~~~~~gH~~~~~ 764 (789)
. ..++.. ++||.+...
T Consensus 190 ----~--~~v~~h-~gGH~vP~~ 205 (212)
T PF03959_consen 190 ----D--ARVIEH-DGGHHVPRK 205 (212)
T ss_dssp ----H--EEEEEE-SSSSS----
T ss_pred ----C--cEEEEE-CCCCcCcCC
Confidence 1 355555 688987543
No 244
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.83 E-value=0.0098 Score=72.78 Aligned_cols=192 Identities=15% Similarity=0.103 Sum_probs=103.1
Q ss_pred cceEEEEe-CCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEE-ecCCcEE
Q 003878 237 FSSIAWTH-DSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHV-TEDGQYL 314 (789)
Q Consensus 237 ~~~~~wsp-Dg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~-SpDG~~l 314 (789)
..+++|+| |+..|+-... ...|.+|++.+... ...+... ..+..+.| +++|.+|
T Consensus 578 V~~l~~~p~~~~~L~Sgs~-------------------Dg~v~iWd~~~~~~--~~~~~~~---~~v~~v~~~~~~g~~l 633 (793)
T PLN00181 578 VWSIDYSSADPTLLASGSD-------------------DGSVKLWSINQGVS--IGTIKTK---ANICCVQFPSESGRSL 633 (793)
T ss_pred EEEEEEcCCCCCEEEEEcC-------------------CCEEEEEECCCCcE--EEEEecC---CCeEEEEEeCCCCCEE
Confidence 46889997 6666654422 23588999876432 2222221 12446677 4578888
Q ss_pred EEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccce-eEEEecCCCEEEEEECCCCCCceEEEEECCC
Q 003878 315 VMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKE 393 (789)
Q Consensus 315 ~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~ 393 (789)
+..+. ...|+++|+.+.. .+...+....... ...|. ++..|+..+ .+..|..+|+..
T Consensus 634 atgs~-----dg~I~iwD~~~~~------------~~~~~~~~h~~~V~~v~f~-~~~~lvs~s----~D~~ikiWd~~~ 691 (793)
T PLN00181 634 AFGSA-----DHKVYYYDLRNPK------------LPLCTMIGHSKTVSYVRFV-DSSTLVSSS----TDNTLKLWDLSM 691 (793)
T ss_pred EEEeC-----CCeEEEEECCCCC------------ccceEecCCCCCEEEEEEe-CCCEEEEEE----CCCEEEEEeCCC
Confidence 77653 3569999987631 1122222211111 22254 566655433 235688888764
Q ss_pred CC------CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeee--------c---cc--CCeeEE
Q 003878 394 PN------DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQ--------L---PI--EIGSVN 454 (789)
Q Consensus 394 ~~------~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~--------l---~~--~~~~v~ 454 (789)
+. ....+..+. ..+..+.+++++.++++...++ .|++|+...+..... + .. ....|.
T Consensus 692 ~~~~~~~~~l~~~~gh~--~~i~~v~~s~~~~~lasgs~D~--~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~ 767 (793)
T PLN00181 692 SISGINETPLHSFMGHT--NVKNFVGLSVSDGYIATGSETN--EVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFIS 767 (793)
T ss_pred CccccCCcceEEEcCCC--CCeeEEEEcCCCCEEEEEeCCC--EEEEEECCCCCceEEEecccCCcccccccCCCCcEEE
Confidence 21 123333333 3445667776667788888877 677788654322100 0 00 123467
Q ss_pred EeecccCCcEEEEEEcCCCCCcEEEEEE
Q 003878 455 AISARREDSVVFISFTSFLIPGIVYQCN 482 (789)
Q Consensus 455 ~~s~s~d~~~l~~~~ss~~~P~~ly~~d 482 (789)
.+.|++++..++.. + ..+.+..++
T Consensus 768 ~v~ws~~~~~lva~-~---~dG~I~i~~ 791 (793)
T PLN00181 768 SVCWRGQSSTLVAA-N---STGNIKILE 791 (793)
T ss_pred EEEEcCCCCeEEEe-c---CCCcEEEEe
Confidence 77888888765432 2 234455554
No 245
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=97.81 E-value=3.2e-05 Score=90.33 Aligned_cols=131 Identities=21% Similarity=0.199 Sum_probs=86.6
Q ss_pred cCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCC-CCCCH-HHHHHHHcCCeEEEEEeecCCCCCChhHHhcccc
Q 003878 515 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT-PSFSV-SRTILMRHLGAVFCIANIRGGGEYGEEWHKGGAL 592 (789)
Q Consensus 515 s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~-~~~~~-~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~ 592 (789)
+.|. +.+-++.|+.....+ .|++|++|||.-.... ..|.. .....+..+..+|+.++||-|- +| |...+..
T Consensus 93 sEDC---LylNV~tp~~~~~~~-~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRLG~-lG--F~st~d~ 165 (545)
T KOG1516|consen 93 SEDC---LYLNVYTPQGCSESK-LPVMVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRLGP-LG--FLSTGDS 165 (545)
T ss_pred cCCC---ceEEEeccCCCccCC-CCEEEEEeCCceeeccccchhhcCchhccccCCEEEEEeccccee-ce--eeecCCC
Confidence 4455 566777787643223 9999999998432222 22211 1134455578999999999652 22 2222222
Q ss_pred c-CCcchHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHhCC---CceeEEEecCCcc
Q 003878 593 A-KKQNCFDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQRP---DLFGCALAHVGVM 653 (789)
Q Consensus 593 ~-~~~~~~~D~~~~~~~L~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~p---d~f~a~v~~~p~~ 653 (789)
. .+.-.+.|.+.|++|+.++ ---||++|.++|+|+||.++..++.. | .+|+.+|.+++..
T Consensus 166 ~~~gN~gl~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~S-p~s~~LF~~aI~~SG~~ 232 (545)
T KOG1516|consen 166 AAPGNLGLFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLS-PHSRGLFHKAISMSGNA 232 (545)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcC-HhhHHHHHHHHhhcccc
Confidence 2 2334567999999999765 22699999999999999998877664 4 4899888887743
No 246
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=97.80 E-value=0.00099 Score=63.12 Aligned_cols=122 Identities=16% Similarity=0.095 Sum_probs=85.8
Q ss_pred ccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhc
Q 003878 592 LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDF 671 (789)
Q Consensus 592 ~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~ 671 (789)
.++....++|-++.++.-+..- ++.+++.+||.|..+++..+-+.-..++++++.+|+- .
T Consensus 36 ~~w~~P~~~dWi~~l~~~v~a~---~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVAppd-~---------------- 95 (181)
T COG3545 36 DDWEAPVLDDWIARLEKEVNAA---EGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPPD-V---------------- 95 (181)
T ss_pred CCCCCCCHHHHHHHHHHHHhcc---CCCeEEEEecccHHHHHHHHHhhhhccceEEEecCCC-c----------------
Confidence 4566677889888887766542 4559999999999999998887655677777777632 1
Q ss_pred CCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEE
Q 003878 672 GCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIG 751 (789)
Q Consensus 672 g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l 751 (789)
..|.. ....+..++|+...+.. =|.+++++.||+.|+++++..+.+++-.. |
T Consensus 96 ~~~~~--~~~~~~tf~~~p~~~lp-----------fps~vvaSrnDp~~~~~~a~~~a~~wgs~---------------l 147 (181)
T COG3545 96 SRPEI--RPKHLMTFDPIPREPLP-----------FPSVVVASRNDPYVSYEHAEDLANAWGSA---------------L 147 (181)
T ss_pred ccccc--chhhccccCCCccccCC-----------CceeEEEecCCCCCCHHHHHHHHHhccHh---------------h
Confidence 11100 01223456666554443 37889999999999999999998887654 5
Q ss_pred EEeCCCCcCC
Q 003878 752 RIERKAGHGV 761 (789)
Q Consensus 752 ~~~~~~gH~~ 761 (789)
+...++||..
T Consensus 148 v~~g~~GHiN 157 (181)
T COG3545 148 VDVGEGGHIN 157 (181)
T ss_pred eecccccccc
Confidence 6666777753
No 247
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.79 E-value=0.0045 Score=60.84 Aligned_cols=224 Identities=11% Similarity=0.066 Sum_probs=125.3
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
..+-.+..|-|..++| +++....+++||++||+.... +.+. .+
T Consensus 60 ~EVlD~~~s~Dnskf~-----s~GgDk~v~vwDV~TGkv~Rr-~rgH-------~a------------------------ 102 (307)
T KOG0316|consen 60 HEVLDAALSSDNSKFA-----SCGGDKAVQVWDVNTGKVDRR-FRGH-------LA------------------------ 102 (307)
T ss_pred ceeeeccccccccccc-----cCCCCceEEEEEcccCeeeee-cccc-------cc------------------------
Confidence 3466777888998887 444567899999999987652 2221 01
Q ss_pred eeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEE
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL 291 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~ 291 (789)
+...+.|..++ .++++ ......+..|+-.+...+.+.
T Consensus 103 ------------------------qVNtV~fNees-SVv~S------------------gsfD~s~r~wDCRS~s~ePiQ 139 (307)
T KOG0316|consen 103 ------------------------QVNTVRFNEES-SVVAS------------------GSFDSSVRLWDCRSRSFEPIQ 139 (307)
T ss_pred ------------------------eeeEEEecCcc-eEEEe------------------ccccceeEEEEcccCCCCccc
Confidence 24667776444 45444 233456888888877666666
Q ss_pred EEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecc-cc--ceeEEEec
Q 003878 292 CWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG-FD--AQYEVIAN 368 (789)
Q Consensus 292 ~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~-~~--~~~~~~s~ 368 (789)
++.+..+. +.++.. .+.-|+..+.+ ..+..+|+..|. ++.+ +. ..-..+++
T Consensus 140 ildea~D~--V~Si~v--~~heIvaGS~D-----GtvRtydiR~G~-----------------l~sDy~g~pit~vs~s~ 193 (307)
T KOG0316|consen 140 ILDEAKDG--VSSIDV--AEHEIVAGSVD-----GTVRTYDIRKGT-----------------LSSDYFGHPITSVSFSK 193 (307)
T ss_pred hhhhhcCc--eeEEEe--cccEEEeeccC-----CcEEEEEeecce-----------------eehhhcCCcceeEEecC
Confidence 66554322 334433 23334333322 335666766541 1111 11 11123789
Q ss_pred CCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeeccc
Q 003878 369 DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI 448 (789)
Q Consensus 369 dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~ 448 (789)
||+-..+.+ -+..|.++|-++++-.+.-..+....+-..-.+...+..+++.+++| .+|+||+.++..+..+..
T Consensus 194 d~nc~La~~----l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG--~Vy~wdLvd~~~~sk~~~ 267 (307)
T KOG0316|consen 194 DGNCSLASS----LDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDG--KVYFWDLVDETQISKLSV 267 (307)
T ss_pred CCCEEEEee----ccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCc--eEEEEEeccceeeeeecc
Confidence 988666433 23567778877775222222222111212233444467889999998 799999987665445544
Q ss_pred CCee-EEEeecccCCcEEEE
Q 003878 449 EIGS-VNAISARREDSVVFI 467 (789)
Q Consensus 449 ~~~~-v~~~s~s~d~~~l~~ 467 (789)
+... +..++..|.-..++.
T Consensus 268 ~~~v~v~dl~~hp~~~~f~~ 287 (307)
T KOG0316|consen 268 VSTVIVTDLSCHPTMDDFIT 287 (307)
T ss_pred CCceeEEeeecccCccceeE
Confidence 4332 445555554444443
No 248
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=97.78 E-value=0.0028 Score=64.52 Aligned_cols=260 Identities=14% Similarity=0.113 Sum_probs=135.8
Q ss_pred EEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCC-------cee-----cc-cccccccccccCccceeeee-ecc-cc
Q 003878 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQ-------IVE-----AD-ALSWVCFCFSHSFGYFFHLT-ISL-LN 198 (789)
Q Consensus 134 ~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg-------~~~-----~~-~~~~~~~~~~~~~~~~~~~~-~~~-~~ 198 (789)
....++||||..+| .|+-...|+|+|++.- ++. +. .+-.. .++|++ ++- ..
T Consensus 115 cR~aafs~DG~lvA-----TGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRT---------lYDH~devn~l~F 180 (430)
T KOG0640|consen 115 CRAAAFSPDGSLVA-----TGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRT---------LYDHVDEVNDLDF 180 (430)
T ss_pred eeeeeeCCCCcEEE-----ccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEee---------hhhccCcccceee
Confidence 44567999999999 6777889999999821 000 00 00000 122221 111 12
Q ss_pred ccccccccccccceeeEEEeeeccccceeeeeeec------------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCC
Q 003878 199 VPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVS------------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAG 266 (789)
Q Consensus 199 ~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~------------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~ 266 (789)
-|.. .||+++.++++-.|....- .....++.|.|.|..|+.....
T Consensus 181 HPre------------~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdH----------- 237 (430)
T KOG0640|consen 181 HPRE------------TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDH----------- 237 (430)
T ss_pred cchh------------heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCC-----------
Confidence 2444 6899999999999876543 2224678999999999876432
Q ss_pred ccccCCcccEEEEEECCCCCCCcEEEEecCC--CCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCccccc
Q 003878 267 TETDSNLYHEFYYHFLGTKQSEDILCWKDPE--HPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFK 344 (789)
Q Consensus 267 ~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~--~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~ 344 (789)
..++++++.|-+. .+-..|+ +...+..+..|+.|+.-+-.+.+ ..|.++|--.+
T Consensus 238 --------p~~rlYdv~T~Qc---fvsanPd~qht~ai~~V~Ys~t~~lYvTaSkD-----G~IklwDGVS~-------- 293 (430)
T KOG0640|consen 238 --------PTLRLYDVNTYQC---FVSANPDDQHTGAITQVRYSSTGSLYVTASKD-----GAIKLWDGVSN-------- 293 (430)
T ss_pred --------CceeEEeccceeE---eeecCcccccccceeEEEecCCccEEEEeccC-----CcEEeeccccH--------
Confidence 2366777776432 2222222 22335678889988755433332 34666663321
Q ss_pred ccCCCCccEeee---ccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCC--CceeeeEEEecCCE
Q 003878 345 KRDGLLPFVKLI---DGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAE--RDVLESATAVNLNQ 419 (789)
Q Consensus 345 ~~~~~~~~~~l~---~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~--~~~i~~v~~~~~~~ 419 (789)
.+....- ++...-...|+.+|++++ +. +.+.-+.+|.+.++...++.+..+. .+....-+++++..
T Consensus 294 -----rCv~t~~~AH~gsevcSa~Ftkn~kyiL--sS--G~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtE 364 (430)
T KOG0640|consen 294 -----RCVRTIGNAHGGSEVCSAVFTKNGKYIL--SS--GKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTE 364 (430)
T ss_pred -----HHHHHHHhhcCCceeeeEEEccCCeEEe--ec--CCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCcc
Confidence 1111111 111111245888888655 22 3345677777766542333332210 11111222333222
Q ss_pred EEEEEEeCCeEEEEEEECCCCceeeecccC-CeeEEEeecccCCc
Q 003878 420 MIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAISARREDS 463 (789)
Q Consensus 420 lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~-~~~v~~~s~s~d~~ 463 (789)
=|+..-+.....|..||..++..+..+.+. .+.+..+.-+|.+.
T Consensus 365 dyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p 409 (430)
T KOG0640|consen 365 DYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEP 409 (430)
T ss_pred ceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCC
Confidence 222233333457888988777654555544 44444444444443
No 249
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.77 E-value=0.003 Score=65.71 Aligned_cols=117 Identities=15% Similarity=0.165 Sum_probs=73.6
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
|+.-|.+++|.+||..|+-+. -| ...|.|||..+|..++..-.+..
T Consensus 194 gh~pVtsmqwn~dgt~l~tAS--~g--sssi~iWdpdtg~~~pL~~~glg------------------------------ 239 (445)
T KOG2139|consen 194 GHNPVTSMQWNEDGTILVTAS--FG--SSSIMIWDPDTGQKIPLIPKGLG------------------------------ 239 (445)
T ss_pred CCceeeEEEEcCCCCEEeecc--cC--cceEEEEcCCCCCcccccccCCC------------------------------
Confidence 445688999999999887432 23 46799999999987663311110
Q ss_pred cceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECC-CCCCC
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLG-TKQSE 288 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg-~~~~~ 288 (789)
.++-+.|||||..|+-.+.+.. ..++... +-..+
T Consensus 240 --------------------------g~slLkwSPdgd~lfaAt~dav-------------------frlw~e~q~wt~e 274 (445)
T KOG2139|consen 240 --------------------------GFSLLKWSPDGDVLFAATCDAV-------------------FRLWQENQSWTKE 274 (445)
T ss_pred --------------------------ceeeEEEcCCCCEEEEecccce-------------------eeeehhcccceec
Confidence 1467899999999997765531 2222111 11111
Q ss_pred cEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECC
Q 003878 289 DILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLS 334 (789)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~ 334 (789)
.- +. .+.++....|||+|++|+|.... ...||.+...
T Consensus 275 rw-~l----gsgrvqtacWspcGsfLLf~~sg----sp~lysl~f~ 311 (445)
T KOG2139|consen 275 RW-IL----GSGRVQTACWSPCGSFLLFACSG----SPRLYSLTFD 311 (445)
T ss_pred ce-ec----cCCceeeeeecCCCCEEEEEEcC----CceEEEEeec
Confidence 11 11 12345678899999999998754 3556666543
No 250
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=97.76 E-value=0.0063 Score=61.94 Aligned_cols=247 Identities=13% Similarity=0.084 Sum_probs=135.9
Q ss_pred CCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccc
Q 003878 126 LSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLF 205 (789)
Q Consensus 126 ~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 205 (789)
+-.++...|.-..++|||..+| +|+-...|.+|++-....---.+... |.
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~a-----SgG~Dr~I~LWnv~gdceN~~~lkgH------sg------------------- 91 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFA-----SGGSDRAIVLWNVYGDCENFWVLKGH------SG------------------- 91 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEe-----ecCCcceEEEEeccccccceeeeccc------cc-------------------
Confidence 3345556677889999999998 45556799999976542211122221 10
Q ss_pred cccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCC
Q 003878 206 LYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTK 285 (789)
Q Consensus 206 ~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~ 285 (789)
.+..+.|.+|+..|+-... ..+++.|+..++
T Consensus 92 ------------------------------AVM~l~~~~d~s~i~S~gt-------------------Dk~v~~wD~~tG 122 (338)
T KOG0265|consen 92 ------------------------------AVMELHGMRDGSHILSCGT-------------------DKTVRGWDAETG 122 (338)
T ss_pred ------------------------------eeEeeeeccCCCEEEEecC-------------------CceEEEEecccc
Confidence 2578899999999875533 235888888776
Q ss_pred CCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEE
Q 003878 286 QSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEV 365 (789)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 365 (789)
.. ++.-..+..++.++..+.-|-.|+.+.++ ...+.++|+.+.. +.......+...-..
T Consensus 123 ~~----~rk~k~h~~~vNs~~p~rrg~~lv~Sgsd----D~t~kl~D~R~k~-------------~~~t~~~kyqltAv~ 181 (338)
T KOG0265|consen 123 KR----IRKHKGHTSFVNSLDPSRRGPQLVCSGSD----DGTLKLWDIRKKE-------------AIKTFENKYQLTAVG 181 (338)
T ss_pred ee----eehhccccceeeecCccccCCeEEEecCC----CceEEEEeecccc-------------hhhccccceeEEEEE
Confidence 43 22223334445556666667777665543 3457778887521 011111111111112
Q ss_pred EecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCC---Cce
Q 003878 366 IANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKN---GSL 442 (789)
Q Consensus 366 ~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~t---G~~ 442 (789)
|...++.+.. ++-+..|-.+|+...+-.-.+-.+. ..|.+++.++++..+.+-.-+. .+.+||..- ++.
T Consensus 182 f~d~s~qv~s----ggIdn~ikvWd~r~~d~~~~lsGh~--DtIt~lsls~~gs~llsnsMd~--tvrvwd~rp~~p~~R 253 (338)
T KOG0265|consen 182 FKDTSDQVIS----GGIDNDIKVWDLRKNDGLYTLSGHA--DTITGLSLSRYGSFLLSNSMDN--TVRVWDVRPFAPSQR 253 (338)
T ss_pred ecccccceee----ccccCceeeeccccCcceEEeeccc--CceeeEEeccCCCccccccccc--eEEEEEecccCCCCc
Confidence 5444554441 2345678889986655222333333 5678888888555544433332 677887641 221
Q ss_pred eeecccCCeeE-------EEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 443 LHQLPIEIGSV-------NAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 443 ~~~l~~~~~~v-------~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
.+..-.+.+ -..+|+|++..+-+..+ -..+|.||..+.
T Consensus 254 --~v~if~g~~hnfeknlL~cswsp~~~~i~ags~----dr~vyvwd~~~r 298 (338)
T KOG0265|consen 254 --CVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSA----DRFVYVWDTTSR 298 (338)
T ss_pred --eEEEeecchhhhhhhcceeeccCCCCccccccc----cceEEEeecccc
Confidence 121111111 13467888776544332 246788886554
No 251
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=97.75 E-value=0.00061 Score=69.32 Aligned_cols=225 Identities=18% Similarity=0.213 Sum_probs=127.7
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccce
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIF 212 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 212 (789)
++-.+.+|-|...|| +|+....|+||.++||.-+. .+... |+.|
T Consensus 265 aVlci~FSRDsEMlA-----sGsqDGkIKvWri~tG~ClR-rFdrA-----HtkG------------------------- 308 (508)
T KOG0275|consen 265 AVLCISFSRDSEMLA-----SGSQDGKIKVWRIETGQCLR-RFDRA-----HTKG------------------------- 308 (508)
T ss_pred ceEEEeecccHHHhh-----ccCcCCcEEEEEEecchHHH-Hhhhh-----hccC-------------------------
Confidence 355678999999998 67777899999999997654 22222 2222
Q ss_pred eeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEE
Q 003878 213 FFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILC 292 (789)
Q Consensus 213 ~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~ 292 (789)
...+.||.|+.+|+-.. ..+.+++|-+-++. ++
T Consensus 309 ------------------------vt~l~FSrD~SqiLS~s-------------------fD~tvRiHGlKSGK----~L 341 (508)
T KOG0275|consen 309 ------------------------VTCLSFSRDNSQILSAS-------------------FDQTVRIHGLKSGK----CL 341 (508)
T ss_pred ------------------------eeEEEEccCcchhhccc-------------------ccceEEEeccccch----hH
Confidence 47889999999987443 33467778665442 12
Q ss_pred EecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCE
Q 003878 293 WKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTV 372 (789)
Q Consensus 293 ~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~ 372 (789)
-+-..+..|+..+.+++||.+++-.++++ .+.+++.++.++ +.. ++++-.+........-|....
T Consensus 342 KEfrGHsSyvn~a~ft~dG~~iisaSsDg-----tvkvW~~KtteC-~~T---------fk~~~~d~~vnsv~~~PKnpe 406 (508)
T KOG0275|consen 342 KEFRGHSSYVNEATFTDDGHHIISASSDG-----TVKVWHGKTTEC-LST---------FKPLGTDYPVNSVILLPKNPE 406 (508)
T ss_pred HHhcCccccccceEEcCCCCeEEEecCCc-----cEEEecCcchhh-hhh---------ccCCCCcccceeEEEcCCCCc
Confidence 12233566777889999999997665443 366777766421 111 111111111111112343333
Q ss_pred EEEEECCCCCCceEEEEECCCCCCeEEeccCC-C-CceeeeEEEec-CCEEEEEEEeCCeEEEEEEECCCCceeeecccC
Q 003878 373 FTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEA-E-RDVLESATAVN-LNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE 449 (789)
Q Consensus 373 l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~-~-~~~i~~v~~~~-~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~ 449 (789)
-+++.|+. ..||.+++.+.- .+...... + ...+ ...+++ ++++|... +|+ .+|-+...+|+..+.++..
T Consensus 407 h~iVCNrs---ntv~imn~qGQv-VrsfsSGkREgGdFi-~~~lSpkGewiYcig-ED~--vlYCF~~~sG~LE~tl~Vh 478 (508)
T KOG0275|consen 407 HFIVCNRS---NTVYIMNMQGQV-VRSFSSGKREGGDFI-NAILSPKGEWIYCIG-EDG--VLYCFSVLSGKLERTLPVH 478 (508)
T ss_pred eEEEEcCC---CeEEEEeccceE-EeeeccCCccCCceE-EEEecCCCcEEEEEc-cCc--EEEEEEeecCceeeeeecc
Confidence 34456653 468888886532 22222211 1 1233 333444 35566544 444 6888888888875666655
Q ss_pred CeeEEEeecccCCc
Q 003878 450 IGSVNAISARREDS 463 (789)
Q Consensus 450 ~~~v~~~s~s~d~~ 463 (789)
...+-++.-.|..+
T Consensus 479 EkdvIGl~HHPHqN 492 (508)
T KOG0275|consen 479 EKDVIGLTHHPHQN 492 (508)
T ss_pred cccccccccCcccc
Confidence 44444555444444
No 252
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=97.74 E-value=0.00056 Score=73.53 Aligned_cols=223 Identities=18% Similarity=0.167 Sum_probs=129.6
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCcee-ccccccc-ccccccCccceeeeeecccccccccccccccc
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVE-ADALSWV-CFCFSHSFGYFFHLTISLLNVPTYKLFLYLRG 210 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 210 (789)
.+.+..++|||+.|+ .|++..++-||||++-... ...++.. -.|| +|.+ .||.
T Consensus 467 yiRSckL~pdgrtLi-----vGGeastlsiWDLAapTprikaeltssapaCy--------ALa~----spDa-------- 521 (705)
T KOG0639|consen 467 YIRSCKLLPDGRTLI-----VGGEASTLSIWDLAAPTPRIKAELTSSAPACY--------ALAI----SPDA-------- 521 (705)
T ss_pred ceeeeEecCCCceEE-----eccccceeeeeeccCCCcchhhhcCCcchhhh--------hhhc----CCcc--------
Confidence 367888999999998 4677999999999986422 1122221 1232 2333 3666
Q ss_pred ceeeEEEeeeccccceeeeeeeccccc----------ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEE
Q 003878 211 IFFFFYLFSLVKSTIYSFWSVVSQFKF----------SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYH 280 (789)
Q Consensus 211 ~~~~~~~~~s~~~g~~~l~~~~~~~~~----------~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 280 (789)
+++|++=.+|...||.+..+..+ ..+..|+||..|+- .+..+.|+.|
T Consensus 522 ----kvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWT-------------------GGlDntvRcW 578 (705)
T KOG0639|consen 522 ----KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWT-------------------GGLDNTVRCW 578 (705)
T ss_pred ----ceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeec-------------------CCCccceeeh
Confidence 69999999999999998872222 45667777777652 2345668889
Q ss_pred ECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc
Q 003878 281 FLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD 360 (789)
Q Consensus 281 ~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 360 (789)
++.+...-.. + +-...++++...|.|.||++... ++.++++.... +.+ -.+.....
T Consensus 579 Dlregrqlqq--h---dF~SQIfSLg~cP~~dWlavGMe-----ns~vevlh~sk-p~k-------------yqlhlheS 634 (705)
T KOG0639|consen 579 DLREGRQLQQ--H---DFSSQIFSLGYCPTGDWLAVGME-----NSNVEVLHTSK-PEK-------------YQLHLHES 634 (705)
T ss_pred hhhhhhhhhh--h---hhhhhheecccCCCccceeeecc-----cCcEEEEecCC-ccc-------------eeeccccc
Confidence 8876532111 1 11233568889999999998764 35578877654 211 11111111
Q ss_pred ceeE-EEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEE
Q 003878 361 AQYE-VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQI 434 (789)
Q Consensus 361 ~~~~-~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~ 434 (789)
.... -|++-|++|+ .+.++ ..-..++++. +. .++...+...+....++.+++++++.+-+-...||-
T Consensus 635 cVLSlKFa~cGkwfv-StGkD-nlLnawrtPy--Ga---siFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 635 CVLSLKFAYCGKWFV-STGKD-NLLNAWRTPY--GA---SIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYE 702 (705)
T ss_pred EEEEEEecccCceee-ecCch-hhhhhccCcc--cc---ceeeccccCcceeeeeccCceEEEecCCCcceEEEE
Confidence 1111 2677787654 44332 1122333332 22 122222234455666666678888777664444543
No 253
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=97.74 E-value=0.00027 Score=75.72 Aligned_cols=225 Identities=12% Similarity=0.033 Sum_probs=127.2
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecc-cccccccccccCccceeeeeecccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEAD-ALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYL 208 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 208 (789)
+.-.|..+.||++|..+. +.+=...|++||++||..+.. ....
T Consensus 257 H~k~Vrd~~~s~~g~~fL-----S~sfD~~lKlwDtETG~~~~~f~~~~------------------------------- 300 (503)
T KOG0282|consen 257 HRKPVRDASFNNCGTSFL-----SASFDRFLKLWDTETGQVLSRFHLDK------------------------------- 300 (503)
T ss_pred chhhhhhhhccccCCeee-----eeecceeeeeeccccceEEEEEecCC-------------------------------
Confidence 334577889999999886 233356899999999977641 1111
Q ss_pred ccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCC
Q 003878 209 RGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSE 288 (789)
Q Consensus 209 ~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~ 288 (789)
...-+.+.||+..+|+.. ....+|..|++.++..
T Consensus 301 ---------------------------~~~cvkf~pd~~n~fl~G------------------~sd~ki~~wDiRs~kv- 334 (503)
T KOG0282|consen 301 ---------------------------VPTCVKFHPDNQNIFLVG------------------GSDKKIRQWDIRSGKV- 334 (503)
T ss_pred ---------------------------CceeeecCCCCCcEEEEe------------------cCCCcEEEEeccchHH-
Confidence 135677899997777662 2344688899877531
Q ss_pred cEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee--EEE
Q 003878 289 DILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY--EVI 366 (789)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~ 366 (789)
+-+-..+-..+..+.+-++|++.+.++.+. + +.+++-... .+...........- ...
T Consensus 335 ---vqeYd~hLg~i~~i~F~~~g~rFissSDdk---s--~riWe~~~~-------------v~ik~i~~~~~hsmP~~~~ 393 (503)
T KOG0282|consen 335 ---VQEYDRHLGAILDITFVDEGRRFISSSDDK---S--VRIWENRIP-------------VPIKNIADPEMHTMPCLTL 393 (503)
T ss_pred ---HHHHHhhhhheeeeEEccCCceEeeeccCc---c--EEEEEcCCC-------------ccchhhcchhhccCcceec
Confidence 111112233456788899999987665432 3 444444331 11111111000011 124
Q ss_pred ecCCCEEEEEECCCCCCceEEEEECCCCC--CeEEec-cCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCcee
Q 003878 367 ANDDTVFTFLTNKDAPKYKIIRVDLKEPN--DWFEVI-PEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLL 443 (789)
Q Consensus 367 s~dG~~l~~~tn~~~~~~~L~~~dl~~~~--~~~~l~-~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~ 443 (789)
.|+|..+.-.+.. ..|+...+...- .-+..+ .+.-...-..+.+++|+..++++..+| .++.||.++-+..
T Consensus 394 ~P~~~~~~aQs~d----N~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG--~v~~wdwkt~kl~ 467 (503)
T KOG0282|consen 394 HPNGKWFAAQSMD----NYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDG--KVNFWDWKTTKLV 467 (503)
T ss_pred CCCCCeehhhccC----ceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCc--cEEEeechhhhhh
Confidence 5677766544332 234444332210 001111 111122334577888888998888777 7899998876665
Q ss_pred eecccCCeeEEEeecccCCc
Q 003878 444 HQLPIEIGSVNAISARREDS 463 (789)
Q Consensus 444 ~~l~~~~~~v~~~s~s~d~~ 463 (789)
..+..+...+.++.|.|-..
T Consensus 468 ~~lkah~~~ci~v~wHP~e~ 487 (503)
T KOG0282|consen 468 SKLKAHDQPCIGVDWHPVEP 487 (503)
T ss_pred hccccCCcceEEEEecCCCc
Confidence 66666655555677766544
No 254
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.74 E-value=0.0027 Score=72.75 Aligned_cols=82 Identities=17% Similarity=0.261 Sum_probs=57.6
Q ss_pred Eeeeccccceeeeeeec--ccc-------cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCC
Q 003878 217 LFSLVKSTIYSFWSVVS--QFK-------FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQS 287 (789)
Q Consensus 217 ~~~s~~~g~~~l~~~~~--~~~-------~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~ 287 (789)
|.+|.-+.|-.||.+.. .|+ +..++|.|-.+..|.+ .....++++|.+-.
T Consensus 383 LLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiS------------------GSLD~KvRiWsI~d--- 441 (712)
T KOG0283|consen 383 LLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFIS------------------GSLDGKVRLWSISD--- 441 (712)
T ss_pred eEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEee------------------cccccceEEeecCc---
Confidence 77888999999999877 222 2678888855555544 23456788998853
Q ss_pred CcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcC
Q 003878 288 EDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEEN 321 (789)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 321 (789)
..+..|.+- ...+.++.++|||++.++.+..+
T Consensus 442 ~~Vv~W~Dl--~~lITAvcy~PdGk~avIGt~~G 473 (712)
T KOG0283|consen 442 KKVVDWNDL--RDLITAVCYSPDGKGAVIGTFNG 473 (712)
T ss_pred CeeEeehhh--hhhheeEEeccCCceEEEEEecc
Confidence 234445443 24567899999999999988754
No 255
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.72 E-value=0.0024 Score=74.16 Aligned_cols=165 Identities=13% Similarity=0.074 Sum_probs=100.1
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
..+++.||||+.++|......+ +..+...||+...+... ..++.... ...+.|||||++|++
T Consensus 352 vsspaiSpdG~~vA~v~~~~~~-----------~~d~~s~Lwv~~~gg~~---~~lt~g~~----~t~PsWspDG~~lw~ 413 (591)
T PRK13616 352 ITSAALSRSGRQVAAVVTLGRG-----------APDPASSLWVGPLGGVA---VQVLEGHS----LTRPSWSLDADAVWV 413 (591)
T ss_pred cccceECCCCCEEEEEEeecCC-----------CCCcceEEEEEeCCCcc---eeeecCCC----CCCceECCCCCceEE
Confidence 3688999999999999753211 11244578888875432 22333321 347899999999988
Q ss_pred EEEcC-------CCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEE-
Q 003878 317 CIEEN-------CDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIR- 388 (789)
Q Consensus 317 ~~~~~-------~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~- 388 (789)
..... .....++|+++++.+. . ..-..+ ...-..|||||.+++++.. ++|++
T Consensus 414 v~dg~~~~~v~~~~~~gql~~~~vd~ge-----------~---~~~~~g-~Issl~wSpDG~RiA~i~~-----g~v~Va 473 (591)
T PRK13616 414 VVDGNTVVRVIRDPATGQLARTPVDASA-----------V---ASRVPG-PISELQLSRDGVRAAMIIG-----GKVYLA 473 (591)
T ss_pred EecCcceEEEeccCCCceEEEEeccCch-----------h---hhccCC-CcCeEEECCCCCEEEEEEC-----CEEEEE
Confidence 75321 1124578888876642 0 101111 1223459999999999872 47777
Q ss_pred --EECCCCC----CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCce
Q 003878 389 --VDLKEPN----DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSL 442 (789)
Q Consensus 389 --~dl~~~~----~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~ 442 (789)
....++. ..+++.+.. .....++.|..++.|++.. .++...++.++++ |..
T Consensus 474 ~Vvr~~~G~~~l~~~~~l~~~l-~~~~~~l~W~~~~~L~V~~-~~~~~~v~~v~vD-G~~ 530 (591)
T PRK13616 474 VVEQTEDGQYALTNPREVGPGL-GDTAVSLDWRTGDSLVVGR-SDPEHPVWYVNLD-GSN 530 (591)
T ss_pred EEEeCCCCceeecccEEeeccc-CCccccceEecCCEEEEEe-cCCCCceEEEecC-Ccc
Confidence 4434443 123344433 2334678899877877654 4555678999998 654
No 256
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.70 E-value=0.0022 Score=73.97 Aligned_cols=168 Identities=14% Similarity=0.156 Sum_probs=100.5
Q ss_pred EEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCc
Q 003878 107 LYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSF 186 (789)
Q Consensus 107 ~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~ 186 (789)
+.+.+-..+++.-+|+.-++ .+..++++-+|+++|. |++.+.|++.++.+..... .+.+. .
T Consensus 78 v~~y~fps~~~~~iL~Rftl------p~r~~~v~g~g~~iaa-----gsdD~~vK~~~~~D~s~~~-~lrgh-------~ 138 (933)
T KOG1274|consen 78 VLRYKFPSGEEDTILARFTL------PIRDLAVSGSGKMIAA-----GSDDTAVKLLNLDDSSQEK-VLRGH-------D 138 (933)
T ss_pred EEEeeCCCCCccceeeeeec------cceEEEEecCCcEEEe-----ecCceeEEEEeccccchhe-eeccc-------C
Confidence 33333334555656665543 4678899999999994 6678889999987763221 11111 0
Q ss_pred cceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeec------------ccc------cceEEEEeCCcE
Q 003878 187 GYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVS------------QFK------FSSIAWTHDSKG 248 (789)
Q Consensus 187 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~------------~~~------~~~~~wspDg~~ 248 (789)
+-..+|+-+ |.+ .+|.+|+-+|+-++|.+.. ... ...++|+|+|.+
T Consensus 139 apVl~l~~~----p~~------------~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~ 202 (933)
T KOG1274|consen 139 APVLQLSYD----PKG------------NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGT 202 (933)
T ss_pred CceeeeeEc----CCC------------CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCe
Confidence 000111111 333 4789999999999999877 111 246899999888
Q ss_pred EEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEE
Q 003878 249 FFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKV 328 (789)
Q Consensus 249 i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i 328 (789)
+++...+. .|..++..+-.. ...+.......-+..++|||.|+|||...- .+.|
T Consensus 203 la~~~~d~-------------------~Vkvy~r~~we~--~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~-----~g~I 256 (933)
T KOG1274|consen 203 LAVPPVDN-------------------TVKVYSRKGWEL--QFKLRDKLSSSKFSDLQWSPNGKYIAASTL-----DGQI 256 (933)
T ss_pred EEeeccCC-------------------eEEEEccCCcee--heeecccccccceEEEEEcCCCcEEeeecc-----CCcE
Confidence 87764332 233433332211 111111112222567899999999997654 3568
Q ss_pred EEEECCC
Q 003878 329 YYCDLSA 335 (789)
Q Consensus 329 ~~~d~~~ 335 (789)
-+||+++
T Consensus 257 ~vWnv~t 263 (933)
T KOG1274|consen 257 LVWNVDT 263 (933)
T ss_pred EEEeccc
Confidence 8899886
No 257
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=97.68 E-value=0.0093 Score=61.06 Aligned_cols=247 Identities=14% Similarity=0.110 Sum_probs=131.2
Q ss_pred EeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccceee
Q 003878 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFF 214 (789)
Q Consensus 135 ~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 214 (789)
...++|+-|.+||.+.. . ..+.+||..|..+- ..+...+
T Consensus 27 ~~~~Fs~~G~~lAvGc~-n----G~vvI~D~~T~~ia-r~lsaH~----------------------------------- 65 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCA-N----GRVVIYDFDTFRIA-RMLSAHV----------------------------------- 65 (405)
T ss_pred ceEEeccCcceeeeecc-C----CcEEEEEccccchh-hhhhccc-----------------------------------
Confidence 45789999999998765 2 36888999887422 1222210
Q ss_pred EEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEe
Q 003878 215 FYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWK 294 (789)
Q Consensus 215 ~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~ 294 (789)
....+++||+||+.|+-+. +...+..|++-.+..-....|.
T Consensus 66 --------------------~pi~sl~WS~dgr~LltsS-------------------~D~si~lwDl~~gs~l~rirf~ 106 (405)
T KOG1273|consen 66 --------------------RPITSLCWSRDGRKLLTSS-------------------RDWSIKLWDLLKGSPLKRIRFD 106 (405)
T ss_pred --------------------cceeEEEecCCCCEeeeec-------------------CCceeEEEeccCCCceeEEEcc
Confidence 0248999999999998543 3446888888665443344444
Q ss_pred cCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc----ceeEEEecCC
Q 003878 295 DPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD----AQYEVIANDD 370 (789)
Q Consensus 295 ~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~s~dG 370 (789)
.| +..+.|.|-.+..++.+--.. .-+++++...... ..+.-.+.+ +....+.+.|
T Consensus 107 sp-----v~~~q~hp~k~n~~va~~~~~----sp~vi~~s~~~h~------------~Lp~d~d~dln~sas~~~fdr~g 165 (405)
T KOG1273|consen 107 SP-----VWGAQWHPRKRNKCVATIMEE----SPVVIDFSDPKHS------------VLPKDDDGDLNSSASHGVFDRRG 165 (405)
T ss_pred Cc-----cceeeeccccCCeEEEEEecC----CcEEEEecCCcee------------eccCCCccccccccccccccCCC
Confidence 32 345677775554444332221 1355666542110 000101111 1112366778
Q ss_pred CEEEEEECCCCCCceEEEEECCCCC--CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECC---C-Cceee
Q 003878 371 TVFTFLTNKDAPKYKIIRVDLKEPN--DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLK---N-GSLLH 444 (789)
Q Consensus 371 ~~l~~~tn~~~~~~~L~~~dl~~~~--~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~---t-G~~~~ 444 (789)
++++.-+ ..++|..++..+-+ .+-.++. -..|..+.++..+..+++-..|- .|+.+++. + |+. .
T Consensus 166 ~yIitGt----sKGkllv~~a~t~e~vas~rits---~~~IK~I~~s~~g~~liiNtsDR--vIR~ye~~di~~~~r~-~ 235 (405)
T KOG1273|consen 166 KYIITGT----SKGKLLVYDAETLECVASFRITS---VQAIKQIIVSRKGRFLIINTSDR--VIRTYEISDIDDEGRD-G 235 (405)
T ss_pred CEEEEec----CcceEEEEecchheeeeeeeech---heeeeEEEEeccCcEEEEecCCc--eEEEEehhhhcccCcc-C
Confidence 8887432 35788888887754 1222322 13456666664344444443332 45566543 1 111 1
Q ss_pred ecccC--------CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCCceEEEeeec
Q 003878 445 QLPIE--------IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRET 496 (789)
Q Consensus 445 ~l~~~--------~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~l~~~ 496 (789)
.++.. .-......++.+|..+. .+| .....+|.|.-..|.+ .++|...
T Consensus 236 e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~--a~s-~~aHaLYIWE~~~GsL-VKILhG~ 291 (405)
T KOG1273|consen 236 EVEPEHKLQDVVNKLQWKKCCFSGDGEYVC--AGS-ARAHALYIWEKSIGSL-VKILHGT 291 (405)
T ss_pred CcChhHHHHHHHhhhhhhheeecCCccEEE--ecc-ccceeEEEEecCCcce-eeeecCC
Confidence 11110 11122234555665433 233 7788999999888862 5555543
No 258
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.66 E-value=0.00099 Score=65.85 Aligned_cols=196 Identities=12% Similarity=0.038 Sum_probs=116.3
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
+...+|+.|.+.|+-.... .-++++++..+..... +-..++..+..+-|-...+.++-
T Consensus 103 vk~~af~~ds~~lltgg~e-------------------kllrvfdln~p~App~---E~~ghtg~Ir~v~wc~eD~~iLS 160 (334)
T KOG0278|consen 103 VKAVAFSQDSNYLLTGGQE-------------------KLLRVFDLNRPKAPPK---EISGHTGGIRTVLWCHEDKCILS 160 (334)
T ss_pred eeeEEecccchhhhccchH-------------------HHhhhhhccCCCCCch---hhcCCCCcceeEEEeccCceEEe
Confidence 4678999999888743221 1234445544332211 22233444555666655555543
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND 396 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~ 396 (789)
++. ...|.++|..++. ....+..........+++||+.|.+. ....|..+|.++-+
T Consensus 161 Sad-----d~tVRLWD~rTgt-------------~v~sL~~~s~VtSlEvs~dG~ilTia-----~gssV~Fwdaksf~- 216 (334)
T KOG0278|consen 161 SAD-----DKTVRLWDHRTGT-------------EVQSLEFNSPVTSLEVSQDGRILTIA-----YGSSVKFWDAKSFG- 216 (334)
T ss_pred ecc-----CCceEEEEeccCc-------------EEEEEecCCCCcceeeccCCCEEEEe-----cCceeEEecccccc-
Confidence 332 3458888988853 12223222211223378899876652 22457778877644
Q ss_pred eEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeec-ccCCeeEEEeecccCCcEEEEEEcCCCCC
Q 003878 397 WFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQL-PIEIGSVNAISARREDSVVFISFTSFLIP 475 (789)
Q Consensus 397 ~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l-~~~~~~v~~~s~s~d~~~l~~~~ss~~~P 475 (789)
.|-.-.-...+.+.++.+++.+++...++. .++.+|..||+.+... ..+.+.|..+.++|||.. |.|-.+-
T Consensus 217 --~lKs~k~P~nV~SASL~P~k~~fVaGged~--~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~----yAsGSED 288 (334)
T KOG0278|consen 217 --LLKSYKMPCNVESASLHPKKEFFVAGGEDF--KVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGEL----YASGSED 288 (334)
T ss_pred --ceeeccCccccccccccCCCceEEecCcce--EEEEEeccCCceeeecccCCCCceEEEEECCCCce----eeccCCC
Confidence 121112235577888888677888777776 7899999999875442 344777888999999973 2355677
Q ss_pred cEEEEEECCCC
Q 003878 476 GIVYQCNLKTE 486 (789)
Q Consensus 476 ~~ly~~dl~tg 486 (789)
++|.+|....+
T Consensus 289 GTirlWQt~~~ 299 (334)
T KOG0278|consen 289 GTIRLWQTTPG 299 (334)
T ss_pred ceEEEEEecCC
Confidence 78888876555
No 259
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=97.64 E-value=0.015 Score=60.44 Aligned_cols=226 Identities=15% Similarity=0.145 Sum_probs=130.8
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccce
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIF 212 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 212 (789)
-+..+.+-|-..++| .|+...+|.|||++||.... ++++. .--.||..
T Consensus 153 WVr~vavdP~n~wf~-----tgs~DrtikIwDlatg~Lkl-tltGh--------------------------i~~vr~va 200 (460)
T KOG0285|consen 153 WVRSVAVDPGNEWFA-----TGSADRTIKIWDLATGQLKL-TLTGH--------------------------IETVRGVA 200 (460)
T ss_pred eEEEEeeCCCceeEE-----ecCCCceeEEEEcccCeEEE-eecch--------------------------hheeeeee
Confidence 467788999988888 56677899999999996542 23321 00124444
Q ss_pred e---eEEEeeeccccceeeeeeec---------ccc-cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEE
Q 003878 213 F---FFYLFSLVKSTIYSFWSVVS---------QFK-FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYY 279 (789)
Q Consensus 213 ~---~~~~~~s~~~g~~~l~~~~~---------~~~-~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (789)
+ +.++|+..+++.-.-|.+.. .+. +..++..|.-+.|+ + ..+...+++
T Consensus 201 vS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~-t------------------~grDst~Rv 261 (460)
T KOG0285|consen 201 VSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLV-T------------------GGRDSTIRV 261 (460)
T ss_pred ecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEE-e------------------cCCcceEEE
Confidence 3 35699999999999998766 111 12344445444443 2 456677999
Q ss_pred EECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc
Q 003878 280 HFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF 359 (789)
Q Consensus 280 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~ 359 (789)
|++.+.. .+.++.+...+ +.++...|-.-+++-.+. ...|.++|+..|++ ...++..
T Consensus 262 WDiRtr~--~V~~l~GH~~~--V~~V~~~~~dpqvit~S~-----D~tvrlWDl~agkt-------------~~tlt~h- 318 (460)
T KOG0285|consen 262 WDIRTRA--SVHVLSGHTNP--VASVMCQPTDPQVITGSH-----DSTVRLWDLRAGKT-------------MITLTHH- 318 (460)
T ss_pred eeecccc--eEEEecCCCCc--ceeEEeecCCCceEEecC-----CceEEEeeeccCce-------------eEeeecc-
Confidence 9998864 34555544433 345555554444443332 35588999987642 2222221
Q ss_pred ccee-E-EEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEEC
Q 003878 360 DAQY-E-VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDL 437 (789)
Q Consensus 360 ~~~~-~-~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl 437 (789)
.... . ...| +...|.+. ....+-.+++..+.....+-.+ ...+..++... +.++++..++| .|+.||.
T Consensus 319 kksvral~lhP--~e~~fASa---s~dnik~w~~p~g~f~~nlsgh--~~iintl~~ns-D~v~~~G~dng--~~~fwdw 388 (460)
T KOG0285|consen 319 KKSVRALCLHP--KENLFASA---SPDNIKQWKLPEGEFLQNLSGH--NAIINTLSVNS-DGVLVSGGDNG--SIMFWDW 388 (460)
T ss_pred cceeeEEecCC--chhhhhcc---CCccceeccCCccchhhccccc--cceeeeeeecc-CceEEEcCCce--EEEEEec
Confidence 1111 1 1222 22222221 1223555566555423332222 25566777766 67888888887 7899999
Q ss_pred CCCce
Q 003878 438 KNGSL 442 (789)
Q Consensus 438 ~tG~~ 442 (789)
++|-.
T Consensus 389 ksg~n 393 (460)
T KOG0285|consen 389 KSGHN 393 (460)
T ss_pred CcCcc
Confidence 88854
No 260
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=97.64 E-value=0.0072 Score=60.57 Aligned_cols=212 Identities=13% Similarity=0.032 Sum_probs=123.5
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccce
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIF 212 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 212 (789)
.+..+.+|++|.++++..+..=+-...|.++|+..-..-...-+.. --+.-|++
T Consensus 95 ~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~----------------~kI~t~~s---------- 148 (327)
T KOG0643|consen 95 PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPY----------------LKIPTPDS---------- 148 (327)
T ss_pred eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCce----------------EEecCCcc----------
Confidence 5677889999999999998776667889999987432110000000 00111333
Q ss_pred eeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEE
Q 003878 213 FFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILC 292 (789)
Q Consensus 213 ~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~ 292 (789)
+.....|+|-++.|++.-.+ -.|-.+++.++. .++
T Consensus 149 -----------------------kit~a~Wg~l~~~ii~Ghe~-------------------G~is~~da~~g~---~~v 183 (327)
T KOG0643|consen 149 -----------------------KITSALWGPLGETIIAGHED-------------------GSISIYDARTGK---ELV 183 (327)
T ss_pred -----------------------ceeeeeecccCCEEEEecCC-------------------CcEEEEEcccCc---eee
Confidence 36889999999999876432 236677776542 233
Q ss_pred EecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCE
Q 003878 293 WKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTV 372 (789)
Q Consensus 293 ~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~ 372 (789)
-....+...+.++.+|+|..+.+-.+.+ +.-.++|..+.. ..+.-..+.......++|--++
T Consensus 184 ~s~~~h~~~Ind~q~s~d~T~FiT~s~D-----ttakl~D~~tl~-------------v~Kty~te~PvN~aaisP~~d~ 245 (327)
T KOG0643|consen 184 DSDEEHSSKINDLQFSRDRTYFITGSKD-----TTAKLVDVRTLE-------------VLKTYTTERPVNTAAISPLLDH 245 (327)
T ss_pred echhhhccccccccccCCcceEEecccC-----ccceeeecccee-------------eEEEeeecccccceecccccce
Confidence 2223344456788999999987654432 224566776631 1111111222223447776666
Q ss_pred EEEEECCCCCCceEEEEECCCCC------------CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEEC
Q 003878 373 FTFLTNKDAPKYKIIRVDLKEPN------------DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDL 437 (789)
Q Consensus 373 l~~~tn~~~~~~~L~~~dl~~~~------------~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl 437 (789)
++.-...++ ..+-......++ ++-.+-.| -..|.++++.|++..|.+..++|.-+|..++.
T Consensus 246 VilgGGqeA--~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH--FGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 246 VILGGGQEA--MDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH--FGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred EEecCCcee--eeeeeecccccchhhhHHHHHHHHHhcccccc--ccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 554322222 234444433332 11122222 25678899999889999999999877777664
No 261
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=97.62 E-value=0.001 Score=71.87 Aligned_cols=165 Identities=16% Similarity=0.128 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHcCCCC--CCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccc-ccc-----c---------c-
Q 003878 600 DDFISASEYLISAGYTQ--SRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDML-RYH-----K---------F- 661 (789)
Q Consensus 600 ~D~~~~~~~L~~~~~~d--~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~-~~~-----~---------~- 661 (789)
-|.+.|+.+|++.-..- .-++..+|+|+||+|+..++--+|.+|.++|-.++.+-.. ++. . +
T Consensus 164 iD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~p~l~~I~Gre~~~~~y~~~~~~~ 243 (403)
T PF11144_consen 164 IDIINALLDLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYALPPLRYIFGREIDFMKYICSGEFF 243 (403)
T ss_pred HHHHHHHHHHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCccccchhheeeeeecCccccccccccc
Confidence 48889999998873222 3389999999999999999999999999999876544321 110 0 0
Q ss_pred ---------cCCccchhhcCCC--CcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHH
Q 003878 662 ---------TIGHAWVSDFGCS--EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLA 730 (789)
Q Consensus 662 ---------~~~~~~~~e~g~p--~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~ 730 (789)
.....|....+.| -.++. ..++..--..++.-. +.. ...|-.+..|+..|+.+|+++-.+++.
T Consensus 244 ~~~~~~i~~~~Kt~Wt~n~~S~~~Fs~~~-~~IR~iLn~~HL~iq---s~~--n~~~~yvsYHs~~D~~~p~~~K~~l~~ 317 (403)
T PF11144_consen 244 NFKNIRIYCFDKTFWTRNKNSPYYFSKAR-YIIRSILNPDHLKIQ---SNY--NKKIIYVSYHSIKDDLAPAEDKEELYE 317 (403)
T ss_pred ccCCEEEEEEeccccccCCCCccccChHH-HHHHHhcChHHHHHH---Hhc--ccceEEEEEeccCCCCCCHHHHHHHHH
Confidence 0011243333444 12221 123332111211110 000 024667889999999999999999999
Q ss_pred HHHHhhccCCCCCCCCCcEEEEEe-----------CCCCcCCCCchhhHHHHHHHHHHHHHHHh
Q 003878 731 TMQYVLCTSLENSPQTNPIIGRIE-----------RKAGHGVGLPTQKMIDEAADRYGFMAKML 783 (789)
Q Consensus 731 ~L~~~~~~~~~~~~~~~~~~l~~~-----------~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 783 (789)
.|++. |-.++|+.. .+-.||++-+.. ......+.-+.+.+
T Consensus 318 ~l~~l----------gfda~l~lIkdes~iDGkfIKnl~HGmgis~k---~Lf~KeLp~~lek~ 368 (403)
T PF11144_consen 318 ILKNL----------GFDATLHLIKDESEIDGKFIKNLEHGMGISDK---ALFKKELPLMLEKL 368 (403)
T ss_pred HHHHc----------CCCeEEEEecChhhccchheeccccCCCCCHH---HHHHHHhHHHHHHh
Confidence 99998 888888876 346788765433 23344444444443
No 262
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=97.62 E-value=0.0016 Score=68.56 Aligned_cols=248 Identities=11% Similarity=0.013 Sum_probs=138.5
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCc---eec---ccccccccccccCccceeeeeeccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI---VEA---DALSWVCFCFSHSFGYFFHLTISLLNVPTYKLF 205 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 205 (789)
+.|..+.|.|+|++|..+.+ +| ..-+|+..+=. +++ ..+..+ .+++++
T Consensus 97 c~V~~v~WtPeGRRLltgs~-SG----EFtLWNg~~fnFEtilQaHDs~Vr~m------------------~ws~~g--- 150 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQ-SG----EFTLWNGTSFNFETILQAHDSPVRTM------------------KWSHNG--- 150 (464)
T ss_pred cceeeEEEcCCCceeEeecc-cc----cEEEecCceeeHHHHhhhhcccceeE------------------EEccCC---
Confidence 56788999999999986554 23 45556653321 111 111111 122233
Q ss_pred cccccceeeEEEeeeccccceeeeeeec----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCccc
Q 003878 206 LYLRGIFFFFYLFSLVKSTIYSFWSVVS----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYH 275 (789)
Q Consensus 206 ~~~~~~~~~~~~~~s~~~g~~~l~~~~~----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~ 275 (789)
..+.++|.+|....|+-.+ .-.+..+++||....|+-...+ .
T Consensus 151 ---------~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdD-------------------g 202 (464)
T KOG0284|consen 151 ---------TWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDD-------------------G 202 (464)
T ss_pred ---------CEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCC-------------------C
Confidence 4688999999999999888 1234678999966555543322 2
Q ss_pred EEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEee
Q 003878 276 EFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKL 355 (789)
Q Consensus 276 ~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l 355 (789)
.|.+|+..-...+.++ ..+. -.+-+++|.|.-..|+..+. .+-|-++|..++. ++..+
T Consensus 203 ~ikiWdf~~~kee~vL--~GHg--wdVksvdWHP~kgLiasgsk-----DnlVKlWDprSg~-------------cl~tl 260 (464)
T KOG0284|consen 203 TIKIWDFRMPKEERVL--RGHG--WDVKSVDWHPTKGLIASGSK-----DNLVKLWDPRSGS-------------CLATL 260 (464)
T ss_pred eEEEEeccCCchhhee--ccCC--CCcceeccCCccceeEEccC-----CceeEeecCCCcc-------------hhhhh
Confidence 4677776554444443 2221 12457899998776654332 3468889988752 11111
Q ss_pred ecccccee-EEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEec-CCEEEEEEEeCCeEEEE
Q 003878 356 IDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN-LNQMIVSYLSDVKYVLQ 433 (789)
Q Consensus 356 ~~~~~~~~-~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~-~~~lv~~~~~~g~~~L~ 433 (789)
...-.... ..|.++|..|.-.+ .+..+.++|+.+-++....-.+. ..+..+.|.+ ...|+.+.-.+| .|+
T Consensus 261 h~HKntVl~~~f~~n~N~Llt~s----kD~~~kv~DiR~mkEl~~~r~Hk--kdv~~~~WhP~~~~lftsgg~Dg--svv 332 (464)
T KOG0284|consen 261 HGHKNTVLAVKFNPNGNWLLTGS----KDQSCKVFDIRTMKELFTYRGHK--KDVTSLTWHPLNESLFTSGGSDG--SVV 332 (464)
T ss_pred hhccceEEEEEEcCCCCeeEEcc----CCceEEEEehhHhHHHHHhhcch--hhheeeccccccccceeeccCCC--ceE
Confidence 11111111 23889986655322 23457777876443233333343 3355677776 356777777776 455
Q ss_pred EEECCCCceeeecccC-CeeEEEeecccCCc
Q 003878 434 IRDLKNGSLLHQLPIE-IGSVNAISARREDS 463 (789)
Q Consensus 434 ~~dl~tG~~~~~l~~~-~~~v~~~s~s~d~~ 463 (789)
.|.+...+.+..+... .+.|.++++.|=|-
T Consensus 333 h~~v~~~~p~~~i~~AHd~~iwsl~~hPlGh 363 (464)
T KOG0284|consen 333 HWVVGLEEPLGEIPPAHDGEIWSLAYHPLGH 363 (464)
T ss_pred EEeccccccccCCCcccccceeeeeccccce
Confidence 5555422332333322 56677777777554
No 263
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=97.61 E-value=0.0048 Score=66.85 Aligned_cols=230 Identities=19% Similarity=0.179 Sum_probs=138.7
Q ss_pred EEEEEecCCCCCCCCccEEEEEcCCCC---ccCCCCCCHHHH-HHHHcCCeEEEEE-eec-------CCCC-C------C
Q 003878 523 PMFIVSKKNIKLDGSHPCLLYGYGGFN---ISVTPSFSVSRT-ILMRHLGAVFCIA-NIR-------GGGE-Y------G 583 (789)
Q Consensus 523 ~~~l~~p~~~~~~~~~P~ll~~hGg~~---~~~~~~~~~~~~-~~l~~~G~~v~~~-~~R-------G~g~-~------g 583 (789)
.+.|+.|++. ..+...+|++-||.. ....+.+....+ .+...-|-+|+.. ++. +-+. . +
T Consensus 51 ~l~I~vP~~~--~~~~~all~i~gG~~~~~~~~~~~~~~~~~~~~A~~t~siv~~l~qvPNQpl~f~~d~~~r~ED~iIA 128 (367)
T PF10142_consen 51 WLTIYVPKND--KNPDTALLFITGGSNRNWPGPPPDFDDELLQMIARATGSIVAILYQVPNQPLTFDNDPKPRTEDAIIA 128 (367)
T ss_pred EEEEEECCCC--CCCceEEEEEECCcccCCCCCCCcchHHHHHHHHHhcCCEEEEeCcCCCCCeEeCCCCccccHHHHHH
Confidence 4677888872 356678999999862 222223333333 3333345555544 222 2221 1 1
Q ss_pred hhHHhcccc---cCCc-----chHHHHHHHH-HHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecC-Ccc
Q 003878 584 EEWHKGGAL---AKKQ-----NCFDDFISAS-EYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHV-GVM 653 (789)
Q Consensus 584 ~~~~~~~~~---~~~~-----~~~~D~~~~~-~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~-p~~ 653 (789)
..|..-... .+-. .+.--.++++ +++.+....+.++.+|.|.|==|..+..++.- ..+.+|++..| +++
T Consensus 129 ytW~~fl~~~d~~w~l~~PMtka~vrAMD~vq~~~~~~~~~~i~~FvV~GaSKRGWTtWltaa~-D~RV~aivP~Vid~L 207 (367)
T PF10142_consen 129 YTWRKFLETGDPEWPLHLPMTKAAVRAMDAVQEFLKKKFGVNIEKFVVTGASKRGWTTWLTAAV-DPRVKAIVPIVIDVL 207 (367)
T ss_pred HHHHHHhccCCccchhhhhHHHHHHHHHHHHHHHHHhhcCCCccEEEEeCCchHhHHHHHhhcc-CcceeEEeeEEEccC
Confidence 234443221 1100 0111222233 33444445678899999999999999888774 56777777653 666
Q ss_pred ccccccc---ccCCccch---hhc---CCC---CcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCC
Q 003878 654 DMLRYHK---FTIGHAWV---SDF---GCS---EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVV 721 (789)
Q Consensus 654 d~~~~~~---~~~~~~~~---~e~---g~p---~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~ 721 (789)
|+...+. -..|..|- ..| |-. ..++..+.+.-.+|+.+.++. .-|-||+.|.+|+...
T Consensus 208 N~~~~l~h~y~~yG~~ws~a~~dY~~~gi~~~l~tp~f~~L~~ivDP~~Y~~rL----------~~PK~ii~atgDeFf~ 277 (367)
T PF10142_consen 208 NMKANLEHQYRSYGGNWSFAFQDYYNEGITQQLDTPEFDKLMQIVDPYSYRDRL----------TMPKYIINATGDEFFV 277 (367)
T ss_pred CcHHHHHHHHHHhCCCCccchhhhhHhCchhhcCCHHHHHHHHhcCHHHHHHhc----------CccEEEEecCCCceec
Confidence 6654321 01110111 111 211 445555556667999998876 6799999999999999
Q ss_pred cHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHh
Q 003878 722 PLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKML 783 (789)
Q Consensus 722 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 783 (789)
+..+.-++..|. | +..|++.|+++|+... .+....+.+|+...+
T Consensus 278 pD~~~~y~d~L~------------G-~K~lr~vPN~~H~~~~-----~~~~~~l~~f~~~~~ 321 (367)
T PF10142_consen 278 PDSSNFYYDKLP------------G-EKYLRYVPNAGHSLIG-----SDVVQSLRAFYNRIQ 321 (367)
T ss_pred cCchHHHHhhCC------------C-CeeEEeCCCCCcccch-----HHHHHHHHHHHHHHH
Confidence 999999999886 3 5579999999999865 245567888888764
No 264
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.59 E-value=0.027 Score=59.05 Aligned_cols=214 Identities=13% Similarity=0.096 Sum_probs=127.4
Q ss_pred cceEEEEe-CCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEE
Q 003878 237 FSSIAWTH-DSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLV 315 (789)
Q Consensus 237 ~~~~~wsp-Dg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~ 315 (789)
...++.+| ++.-++|.|.+. .-+++++..++.... ....+++..++.-..+|+||++|+
T Consensus 7 gH~~a~~p~~~~avafaRRPG------------------~~~~v~D~~~g~~~~--~~~a~~gRHFyGHg~fs~dG~~Ly 66 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPG------------------TFALVFDCRTGQLLQ--RLWAPPGRHFYGHGVFSPDGRLLY 66 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCC------------------cEEEEEEcCCCceee--EEcCCCCCEEecCEEEcCCCCEEE
Confidence 46788899 566677776553 126677776654332 233344455566778999999998
Q ss_pred EEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec-cccceeEEEecCCCEEEEEEC-----CC---------
Q 003878 316 MCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-GFDAQYEVIANDDTVFTFLTN-----KD--------- 380 (789)
Q Consensus 316 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~s~dG~~l~~~tn-----~~--------- 380 (789)
.+-++.......|-++|+..+- ........ +.+..-..+.|||+.|++..- .+
T Consensus 67 tTEnd~~~g~G~IgVyd~~~~~------------~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~ 134 (305)
T PF07433_consen 67 TTENDYETGRGVIGVYDAARGY------------RRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLD 134 (305)
T ss_pred EeccccCCCcEEEEEEECcCCc------------EEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence 7766655556778889987421 00111111 222222347899988876421 11
Q ss_pred CCCceEEEEECCCCCCeEE-eccC-CCCceeeeEEEecCCEEEEEEEeCCe-----EEEEEEECCCCceeeecccC----
Q 003878 381 APKYKIIRVDLKEPNDWFE-VIPE-AERDVLESATAVNLNQMIVSYLSDVK-----YVLQIRDLKNGSLLHQLPIE---- 449 (789)
Q Consensus 381 ~~~~~L~~~dl~~~~~~~~-l~~~-~~~~~i~~v~~~~~~~lv~~~~~~g~-----~~L~~~dl~tG~~~~~l~~~---- 449 (789)
.-...|..+|..+++-... .+|+ ....+|..+++..++.+++.....+. +-|.+++. |+..+.+..+
T Consensus 135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~ 212 (305)
T PF07433_consen 135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQW 212 (305)
T ss_pred hcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHH
Confidence 1134567777777752222 1332 22346788888886666666655542 34555554 3333445443
Q ss_pred ---CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 450 ---IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 450 ---~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
.+.+.+++++.++..++++ | -.-+.+..+|.++++
T Consensus 213 ~~l~~Y~gSIa~~~~g~~ia~t--s-PrGg~~~~~d~~tg~ 250 (305)
T PF07433_consen 213 RRLNGYIGSIAADRDGRLIAVT--S-PRGGRVAVWDAATGR 250 (305)
T ss_pred HhhCCceEEEEEeCCCCEEEEE--C-CCCCEEEEEECCCCC
Confidence 3556778888888877663 3 355788899999985
No 265
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=97.59 E-value=0.0018 Score=76.11 Aligned_cols=212 Identities=10% Similarity=0.009 Sum_probs=111.2
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
+...+..+.||||+++|| +++-..+|.+||..|.+.+. .+....
T Consensus 128 H~~DV~Dv~Wsp~~~~lv-----S~s~DnsViiwn~~tF~~~~-vl~~H~------------------------------ 171 (942)
T KOG0973|consen 128 HDSDVLDVNWSPDDSLLV-----SVSLDNSVIIWNAKTFELLK-VLRGHQ------------------------------ 171 (942)
T ss_pred CCCccceeccCCCccEEE-----EecccceEEEEccccceeee-eeeccc------------------------------
Confidence 334577899999999998 45556789999999985443 333320
Q ss_pred cceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCc
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED 289 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~ 289 (789)
..+-+++|-|=|++|+-...+ +.|.+|+...=+.+.
T Consensus 172 -------------------------s~VKGvs~DP~Gky~ASqsdD-------------------rtikvwrt~dw~i~k 207 (942)
T KOG0973|consen 172 -------------------------SLVKGVSWDPIGKYFASQSDD-------------------RTLKVWRTSDWGIEK 207 (942)
T ss_pred -------------------------ccccceEECCccCeeeeecCC-------------------ceEEEEEcccceeeE
Confidence 035789999999999876543 235555543211111
Q ss_pred EE--EEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccc-eeEEE
Q 003878 290 IL--CWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA-QYEVI 366 (789)
Q Consensus 290 ~~--~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 366 (789)
.. .|++.-...++..+.|||||++|+..-.-.. ..+-+-+++-.+=+ .-..++.+... +...|
T Consensus 208 ~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~-~~~~~~IieR~tWk-------------~~~~LvGH~~p~evvrF 273 (942)
T KOG0973|consen 208 SITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNG-GKSTIAIIERGTWK-------------VDKDLVGHSAPVEVVRF 273 (942)
T ss_pred eeccchhhCCCcceeeecccCCCcCeecchhhccC-CcceeEEEecCCce-------------eeeeeecCCCceEEEEe
Confidence 10 1222112345678999999999975432221 12333344332200 00011111000 00111
Q ss_pred ec--------CCC-----EEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEE
Q 003878 367 AN--------DDT-----VFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQ 433 (789)
Q Consensus 367 s~--------dG~-----~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~ 433 (789)
.| +|. ..|.....++.+..|-+|....+. .--++-+-....|-+++|++|+..++..+.|| .|.
T Consensus 274 nP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R-Pl~vi~~lf~~SI~DmsWspdG~~LfacS~DG--tV~ 350 (942)
T KOG0973|consen 274 NPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR-PLFVIHNLFNKSIVDMSWSPDGFSLFACSLDG--TVA 350 (942)
T ss_pred ChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC-chhhhhhhhcCceeeeeEcCCCCeEEEEecCC--eEE
Confidence 11 111 122111112334456666553332 11111222345688999999888888888887 566
Q ss_pred EEECC
Q 003878 434 IRDLK 438 (789)
Q Consensus 434 ~~dl~ 438 (789)
++.++
T Consensus 351 ~i~Fe 355 (942)
T KOG0973|consen 351 LIHFE 355 (942)
T ss_pred EEEcc
Confidence 66554
No 266
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=97.59 E-value=0.00074 Score=71.07 Aligned_cols=198 Identities=13% Similarity=0.077 Sum_probs=116.9
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
+..+.|+|+||+|+....-. ++-+|+.-+=.-| +|... ++.-+..+.||++|.|++-
T Consensus 99 V~~v~WtPeGRRLltgs~SG-------------------EFtLWNg~~fnFE--tilQa--HDs~Vr~m~ws~~g~wmiS 155 (464)
T KOG0284|consen 99 VNVVRWTPEGRRLLTGSQSG-------------------EFTLWNGTSFNFE--TILQA--HDSPVRTMKWSHNGTWMIS 155 (464)
T ss_pred eeeEEEcCCCceeEeecccc-------------------cEEEecCceeeHH--HHhhh--hcccceeEEEccCCCEEEE
Confidence 57899999999999764321 1334443111111 12222 3344667899999999864
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND 396 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~ 396 (789)
.... .-|-+++..-... +......++ ...-..+||+...|+-.+ +++.|..+|...++.
T Consensus 156 gD~g-----G~iKyWqpnmnnV-----------k~~~ahh~e-aIRdlafSpnDskF~t~S----dDg~ikiWdf~~~ke 214 (464)
T KOG0284|consen 156 GDKG-----GMIKYWQPNMNNV-----------KIIQAHHAE-AIRDLAFSPNDSKFLTCS----DDGTIKIWDFRMPKE 214 (464)
T ss_pred cCCC-----ceEEecccchhhh-----------HHhhHhhhh-hhheeccCCCCceeEEec----CCCeEEEEeccCCch
Confidence 3221 2244444332100 000000001 112234788655544322 346788888766652
Q ss_pred eEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCc
Q 003878 397 WFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPG 476 (789)
Q Consensus 397 ~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~ 476 (789)
-+.|..+. ..+.++.|.+.+.++++...+. -|.+||.++|+.+-.+.....+|..+.++++++.|+ +. ..-.
T Consensus 215 e~vL~GHg--wdVksvdWHP~kgLiasgskDn--lVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Ll-t~---skD~ 286 (464)
T KOG0284|consen 215 ERVLRGHG--WDVKSVDWHPTKGLIASGSKDN--LVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLL-TG---SKDQ 286 (464)
T ss_pred hheeccCC--CCcceeccCCccceeEEccCCc--eeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeE-Ec---cCCc
Confidence 23443333 5578899998778999988886 689999999987656655667788889999997554 32 2334
Q ss_pred EEEEEECCCC
Q 003878 477 IVYQCNLKTE 486 (789)
Q Consensus 477 ~ly~~dl~tg 486 (789)
.+..+|..+.
T Consensus 287 ~~kv~DiR~m 296 (464)
T KOG0284|consen 287 SCKVFDIRTM 296 (464)
T ss_pred eEEEEehhHh
Confidence 6777777644
No 267
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=97.56 E-value=0.036 Score=55.88 Aligned_cols=186 Identities=10% Similarity=0.065 Sum_probs=106.3
Q ss_pred cceEEEEeC-CcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCC-CcEEEEecCCCCeeEEEEEEecCCcEE
Q 003878 237 FSSIAWTHD-SKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQS-EDILCWKDPEHPKYIFSGHVTEDGQYL 314 (789)
Q Consensus 237 ~~~~~wspD-g~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~-~~~~~~~~~~~~~~~~~~~~SpDG~~l 314 (789)
..+++|+|- |. |+++. .....|+.+....+.. .-..+..+ .+...+.+++|||.|++|
T Consensus 17 ~W~~awhp~~g~-ilAsc------------------g~Dk~vriw~~~~~~s~~ck~vld~-~hkrsVRsvAwsp~g~~L 76 (312)
T KOG0645|consen 17 VWSVAWHPGKGV-ILASC------------------GTDKAVRIWSTSSGDSWTCKTVLDD-GHKRSVRSVAWSPHGRYL 76 (312)
T ss_pred EEEEEeccCCce-EEEee------------------cCCceEEEEecCCCCcEEEEEeccc-cchheeeeeeecCCCcEE
Confidence 457999997 54 55552 2334577777764211 11122222 234557899999999999
Q ss_pred EEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee--EEEecCCCEEEEEECCCCCCceEEEEECC
Q 003878 315 VMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY--EVIANDDTVFTFLTNKDAPKYKIIRVDLK 392 (789)
Q Consensus 315 ~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~s~dG~~l~~~tn~~~~~~~L~~~dl~ 392 (789)
+..+.+.. .-|| .-.++. -.. .....+...+. ..|+++|.+|+-.+.. -.++.+.++
T Consensus 77 a~aSFD~t---~~Iw--~k~~~e-----------fec-v~~lEGHEnEVK~Vaws~sG~~LATCSRD----KSVWiWe~d 135 (312)
T KOG0645|consen 77 ASASFDAT---VVIW--KKEDGE-----------FEC-VATLEGHENEVKCVAWSASGNYLATCSRD----KSVWIWEID 135 (312)
T ss_pred EEeeccce---EEEe--ecCCCc-----------eeE-EeeeeccccceeEEEEcCCCCEEEEeeCC----CeEEEEEec
Confidence 87765432 2233 222211 111 12222322222 4599999988854432 356666665
Q ss_pred CCCC---eEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCc--eeeecccCCeeEEEeecccCCcEEE
Q 003878 393 EPND---WFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGS--LLHQLPIEIGSVNAISARREDSVVF 466 (789)
Q Consensus 393 ~~~~---~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~--~~~~l~~~~~~v~~~s~s~d~~~l~ 466 (789)
..++ ...|-+|. +.+..+.|.|...|+++++-|..-++|.-+. ++. ....|.....++-.+.+++.|.++.
T Consensus 136 eddEfec~aVL~~Ht--qDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G~rl~ 211 (312)
T KOG0645|consen 136 EDDEFECIAVLQEHT--QDVKHVIWHPTEDLLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFDNIGSRLV 211 (312)
T ss_pred CCCcEEEEeeecccc--ccccEEEEcCCcceeEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEEEecCCCceEE
Confidence 4432 23444555 4567888888667999988886444444332 232 3345555566787888888887655
No 268
>PRK04940 hypothetical protein; Provisional
Probab=97.55 E-value=0.0016 Score=62.98 Aligned_cols=119 Identities=8% Similarity=-0.037 Sum_probs=73.8
Q ss_pred CcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCC
Q 003878 618 RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWE 697 (789)
Q Consensus 618 ~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~ 697 (789)
++++++|.|+||+.|.+++.++- .+ +|+..|.+.+...+..-.+. ..+|. --.++..+.++ ++.
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g--~~-aVLiNPAv~P~~~L~~~ig~--~~~y~-~~~~~h~~eL~-------~~~--- 123 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCG--IR-QVIFNPNLFPEENMEGKIDR--PEEYA-DIATKCVTNFR-------EKN--- 123 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHC--CC-EEEECCCCChHHHHHHHhCC--Ccchh-hhhHHHHHHhh-------hcC---
Confidence 46999999999999999999864 34 44566766654432211111 01111 11223333333 111
Q ss_pred CCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHH
Q 003878 698 QNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYG 777 (789)
Q Consensus 698 ~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~ 777 (789)
.-..+++..+.|....+.++.+.++. . ..+.+.+|+.|.|.. ..+....+.+
T Consensus 124 --------p~r~~vllq~gDEvLDyr~a~~~y~~---------------~-y~~~v~~GGdH~f~~----fe~~l~~I~~ 175 (180)
T PRK04940 124 --------RDRCLVILSRNDEVLDSQRTAEELHP---------------Y-YEIVWDEEQTHKFKN----ISPHLQRIKA 175 (180)
T ss_pred --------cccEEEEEeCCCcccCHHHHHHHhcc---------------C-ceEEEECCCCCCCCC----HHHHHHHHHH
Confidence 23468888999999998887665532 1 136788999999964 2356778888
Q ss_pred HHH
Q 003878 778 FMA 780 (789)
Q Consensus 778 fl~ 780 (789)
|+.
T Consensus 176 F~~ 178 (180)
T PRK04940 176 FKT 178 (180)
T ss_pred HHh
Confidence 884
No 269
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=97.52 E-value=0.00045 Score=81.44 Aligned_cols=100 Identities=13% Similarity=0.071 Sum_probs=64.6
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChh--HHh-----cc---c---------ccCCc
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEE--WHK-----GG---A---------LAKKQ 596 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~--~~~-----~~---~---------~~~~~ 596 (789)
...|+||++||-.+... .|.. ....|.++||.|+++|+||.|..... +.. .. . +++-.
T Consensus 447 ~g~P~VVllHG~~g~~~--~~~~-lA~~La~~Gy~VIaiDlpGHG~S~~~~~~~~~~a~~~~~~~y~Nl~~l~~aRDn~r 523 (792)
T TIGR03502 447 DGWPVVIYQHGITGAKE--NALA-FAGTLAAAGVATIAIDHPLHGARSFDANASGVNATNANVLAYMNLASLLVARDNLR 523 (792)
T ss_pred CCCcEEEEeCCCCCCHH--HHHH-HHHHHHhCCcEEEEeCCCCCCccccccccccccccccCccceeccccccccccCHH
Confidence 34689999999766533 2332 34455558999999999998865221 000 00 0 11223
Q ss_pred chHHHHHHHHHHHH------Hc----CCCCCCcEEEEeeChHHHHHHHHHHh
Q 003878 597 NCFDDFISASEYLI------SA----GYTQSRKLCIEGGSNGGLLVGACINQ 638 (789)
Q Consensus 597 ~~~~D~~~~~~~L~------~~----~~~d~~~i~i~G~S~GG~l~~~~~~~ 638 (789)
....|+......|. .. +..+..++.++|||+||.+...++..
T Consensus 524 Q~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~ 575 (792)
T TIGR03502 524 QSILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAY 575 (792)
T ss_pred HHHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHh
Confidence 34577777766665 11 12456799999999999999888875
No 270
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=97.52 E-value=0.00099 Score=69.77 Aligned_cols=121 Identities=18% Similarity=0.247 Sum_probs=84.6
Q ss_pred cEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCC----CCCCHHHHHHHHcCCeEEEEEeecCCCCC
Q 003878 507 HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT----PSFSVSRTILMRHLGAVFCIANIRGGGEY 582 (789)
Q Consensus 507 ~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~----~~~~~~~~~~l~~~G~~v~~~~~RG~g~~ 582 (789)
..+++.+.. |+ ..|....+.-++. ++..-||+.-|..+.-.. ......+..+..+.|..|+.+||||=|..
T Consensus 111 ~~kRv~Iq~-D~-~~IDt~~I~~~~a---~~~RWiL~s~GNg~~~E~~~~~~~~~~~~~~~ak~~~aNvl~fNYpGVg~S 185 (365)
T PF05677_consen 111 SVKRVPIQY-DG-VKIDTMAIHQPEA---KPQRWILVSNGNGECYENRAMLDYKDDWIQRFAKELGANVLVFNYPGVGSS 185 (365)
T ss_pred ceeeEEEee-CC-EEEEEEEeeCCCC---CCCcEEEEEcCChHHhhhhhhhccccHHHHHHHHHcCCcEEEECCCccccC
Confidence 456777765 89 9998887764432 455677777775332222 12334567777779999999999995531
Q ss_pred ChhHHhcccccCCcchHHHHHHHHHHHHHcC-CCCCCcEEEEeeChHHHHHHHHHHhC
Q 003878 583 GEEWHKGGALAKKQNCFDDFISASEYLISAG-YTQSRKLCIEGGSNGGLLVGACINQR 639 (789)
Q Consensus 583 g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~-~~d~~~i~i~G~S~GG~l~~~~~~~~ 639 (789)
.|.. ....-..|..++++||.++. .+.+++|++.|+|.||.+++.++.++
T Consensus 186 ------~G~~-s~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~ 236 (365)
T PF05677_consen 186 ------TGPP-SRKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKE 236 (365)
T ss_pred ------CCCC-CHHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhc
Confidence 1222 23445789999999999743 46899999999999999988866653
No 271
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.50 E-value=0.078 Score=66.31 Aligned_cols=167 Identities=8% Similarity=0.018 Sum_probs=89.5
Q ss_pred EEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCcc---Eeeeccc-cceeEEEecCCCEEEEEECC
Q 003878 304 SGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPF---VKLIDGF-DAQYEVIANDDTVFTFLTNK 379 (789)
Q Consensus 304 ~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~---~~l~~~~-~~~~~~~s~dG~~l~~~tn~ 379 (789)
+++++|++..|++.... +..|++++..++... .+..+...... ......+ ...-..++|||+.||+...
T Consensus 687 gVa~dp~~g~LyVad~~----~~~I~v~d~~~g~v~--~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs- 759 (1057)
T PLN02919 687 DVCFEPVNEKVYIAMAG----QHQIWEYNISDGVTR--VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS- 759 (1057)
T ss_pred EEEEecCCCeEEEEECC----CCeEEEEECCCCeEE--EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC-
Confidence 57899987777766432 466888888664210 00000000000 0000000 0111247899998887543
Q ss_pred CCCCceEEEEECCCCCCeEEeccCC------------C--------CceeeeEEEecCCEEEEEEEeCCeEEEEEEECCC
Q 003878 380 DAPKYKIIRVDLKEPNDWFEVIPEA------------E--------RDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKN 439 (789)
Q Consensus 380 ~~~~~~L~~~dl~~~~~~~~l~~~~------------~--------~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~t 439 (789)
.+.+|.++|++++. ...+.... . ...-.++++++++.+|++...++ +|.++|+++
T Consensus 760 --~n~~Irv~D~~tg~-~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~--rIrviD~~t 834 (1057)
T PLN02919 760 --ESSSIRALDLKTGG-SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNH--KIKKLDPAT 834 (1057)
T ss_pred --CCCeEEEEECCCCc-EEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCC--EEEEEECCC
Confidence 35789999988764 22111100 0 00113667777667777665554 899999986
Q ss_pred Cceeeeccc-C-------------CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 440 GSLLHQLPI-E-------------IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 440 G~~~~~l~~-~-------------~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
+.. ..+.. . .....++..+++++ ++++ + ....+|..+|+.+++
T Consensus 835 g~v-~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVa-D--t~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 835 KRV-TTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVA-D--TNNSLIRYLDLNKGE 891 (1057)
T ss_pred CeE-EEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEE-E--CCCCEEEEEECCCCc
Confidence 654 22211 0 01233566777876 5543 3 344589999998875
No 272
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=97.50 E-value=0.00031 Score=79.46 Aligned_cols=117 Identities=20% Similarity=0.123 Sum_probs=71.1
Q ss_pred ccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCC---hhHHhcccccCCcchHHHHHHHHHHHHHcC-
Q 003878 538 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYG---EEWHKGGALAKKQNCFDDFISASEYLISAG- 613 (789)
Q Consensus 538 ~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g---~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~- 613 (789)
.|++|++-|-...............+..+.|..+++...|--|+.- ..-.+..+...-..++.|+...++++..+-
T Consensus 29 gpifl~~ggE~~~~~~~~~~~~~~~lA~~~~a~~v~lEHRyYG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~~~~~ 108 (434)
T PF05577_consen 29 GPIFLYIGGEGPIEPFWINNGFMWELAKEFGALVVALEHRYYGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVKKKYN 108 (434)
T ss_dssp SEEEEEE--SS-HHHHHHH-HHHHHHHHHHTEEEEEE--TTSTTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCccchhhhcCChHHHHHHHcCCcEEEeehhhhcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHHHhhc
Confidence 7999999553211111111123456777899999999999755421 111111122233456899999999988653
Q ss_pred CCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccc
Q 003878 614 YTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMD 654 (789)
Q Consensus 614 ~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d 654 (789)
..+..+++++|+|+||.|++++-.++|++|.|+++.++++.
T Consensus 109 ~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv~ 149 (434)
T PF05577_consen 109 TAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSAPVQ 149 (434)
T ss_dssp TGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET--CC
T ss_pred CCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEeccceee
Confidence 33456999999999999999999999999999988766543
No 273
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=97.49 E-value=0.0052 Score=67.57 Aligned_cols=83 Identities=12% Similarity=0.024 Sum_probs=57.1
Q ss_pred HHHHHHcCCeEEEEEeecCCCCCChhHHhccc--ccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHH
Q 003878 560 RTILMRHLGAVFCIANIRGGGEYGEEWHKGGA--LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACIN 637 (789)
Q Consensus 560 ~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~--~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~ 637 (789)
....|.. |+-|.+.|.+ .+.. ...+.-.++|.+..+...++. +-++ +-++|.|+||.+++++++
T Consensus 122 ~V~~Ll~-g~dVYl~DW~----------~p~~vp~~~~~f~ldDYi~~l~~~i~~--~G~~-v~l~GvCqgG~~~laa~A 187 (406)
T TIGR01849 122 TVEALLP-DHDVYITDWV----------NARMVPLSAGKFDLEDYIDYLIEFIRF--LGPD-IHVIAVCQPAVPVLAAVA 187 (406)
T ss_pred HHHHHhC-CCcEEEEeCC----------CCCCCchhcCCCCHHHHHHHHHHHHHH--hCCC-CcEEEEchhhHHHHHHHH
Confidence 3455553 9999999954 3322 224556678887665555543 2344 999999999999876665
Q ss_pred hC-----CCceeEEEecCCccccc
Q 003878 638 QR-----PDLFGCALAHVGVMDML 656 (789)
Q Consensus 638 ~~-----pd~f~a~v~~~p~~d~~ 656 (789)
.. |+..+.++...+.+|..
T Consensus 188 l~a~~~~p~~~~sltlm~~PID~~ 211 (406)
T TIGR01849 188 LMAENEPPAQPRSMTLMGGPIDAR 211 (406)
T ss_pred HHHhcCCCCCcceEEEEecCccCC
Confidence 54 56788988888877764
No 274
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.47 E-value=0.11 Score=58.70 Aligned_cols=244 Identities=14% Similarity=0.120 Sum_probs=141.2
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccce
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIF 212 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 212 (789)
.+.++++|.+.+.||.+.. ...|-+|++..+=.....+++- +++
T Consensus 27 ~I~slA~s~kS~~lAvsRt-----~g~IEiwN~~~~w~~~~vi~g~---------------------~dr---------- 70 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRT-----DGNIEIWNLSNNWFLEPVIHGP---------------------EDR---------- 70 (691)
T ss_pred ceEEEEEeccCCceeeecc-----CCcEEEEccCCCceeeEEEecC---------------------CCC----------
Confidence 3677889999999996543 3479999998873332223221 111
Q ss_pred eeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEE
Q 003878 213 FFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILC 292 (789)
Q Consensus 213 ~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~ 292 (789)
...+++|+ +|.+||-+. ....|--|++.+.. ....
T Consensus 71 -----------------------sIE~L~W~-e~~RLFS~g-------------------~sg~i~EwDl~~lk--~~~~ 105 (691)
T KOG2048|consen 71 -----------------------SIESLAWA-EGGRLFSSG-------------------LSGSITEWDLHTLK--QKYN 105 (691)
T ss_pred -----------------------ceeeEEEc-cCCeEEeec-------------------CCceEEEEecccCc--eeEE
Confidence 25899999 555666432 22346667766542 2222
Q ss_pred EecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc-ccee-EEEecCC
Q 003878 293 WKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF-DAQY-EVIANDD 370 (789)
Q Consensus 293 ~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~-~~~~-~~~s~dG 370 (789)
.+. ....+.+.+..|.+..+++.+.++ -++.++...+. .........- .... ..|.++|
T Consensus 106 ~d~--~gg~IWsiai~p~~~~l~IgcddG-----vl~~~s~~p~~------------I~~~r~l~rq~sRvLslsw~~~~ 166 (691)
T KOG2048|consen 106 IDS--NGGAIWSIAINPENTILAIGCDDG-----VLYDFSIGPDK------------ITYKRSLMRQKSRVLSLSWNPTG 166 (691)
T ss_pred ecC--CCcceeEEEeCCccceEEeecCCc-----eEEEEecCCce------------EEEEeecccccceEEEEEecCCc
Confidence 222 233456788899999999876443 46666655421 0011111100 0011 2388888
Q ss_pred CEEEEEECCCCCCceEEEEECCCCCCeEEecc------CCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceee
Q 003878 371 TVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIP------EAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLH 444 (789)
Q Consensus 371 ~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~------~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~ 444 (789)
.+++. +..++.|..+|+..+.....+.. ..+...+-++.+-. +..++++...| .|..||.+.|...+
T Consensus 167 ~~i~~----Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~tI~sgDS~G--~V~FWd~~~gTLiq 239 (691)
T KOG2048|consen 167 TKIAG----GSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-DSTIASGDSAG--TVTFWDSIFGTLIQ 239 (691)
T ss_pred cEEEe----cccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee-cCcEEEecCCc--eEEEEcccCcchhh
Confidence 87773 34467899999988763221111 11222334444445 45555555554 79999998887655
Q ss_pred ecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 445 QLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 445 ~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
......+.|..++.+.+++.++.+ ..-+.+++|...+++
T Consensus 240 S~~~h~adVl~Lav~~~~d~vfsa----Gvd~~ii~~~~~~~~ 278 (691)
T KOG2048|consen 240 SHSCHDADVLALAVADNEDRVFSA----GVDPKIIQYSLTTNK 278 (691)
T ss_pred hhhhhhcceeEEEEcCCCCeEEEc----cCCCceEEEEecCCc
Confidence 554456677778777777876643 334566777776664
No 275
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=97.45 E-value=0.02 Score=61.74 Aligned_cols=199 Identities=14% Similarity=0.127 Sum_probs=115.4
Q ss_pred ccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEE
Q 003878 236 KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLV 315 (789)
Q Consensus 236 ~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~ 315 (789)
...+++|+.||..|++...+. .+..|+..... ...+.....| +.++.|+.+|.||+
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G-------------------~~riw~~~G~l---~~tl~~HkgP--I~slKWnk~G~yil 292 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDG-------------------EARIWNKDGNL---ISTLGQHKGP--IFSLKWNKKGTYIL 292 (524)
T ss_pred CcceEEecCCCCeEEEeecCc-------------------EEEEEecCchh---hhhhhccCCc--eEEEEEcCCCCEEE
Confidence 468999999999999875543 46666665432 2233322223 56899999999998
Q ss_pred EEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 316 MCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 316 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
-...+ ..+-++|..++... +.+ .+.. .......|-. .+.|+....+ ...+|++++.+.+.
T Consensus 293 S~~vD-----~ttilwd~~~g~~~----------q~f-~~~s-~~~lDVdW~~-~~~F~ts~td--~~i~V~kv~~~~P~ 352 (524)
T KOG0273|consen 293 SGGVD-----GTTILWDAHTGTVK----------QQF-EFHS-APALDVDWQS-NDEFATSSTD--GCIHVCKVGEDRPV 352 (524)
T ss_pred eccCC-----ccEEEEeccCceEE----------Eee-eecc-CCccceEEec-CceEeecCCC--ceEEEEEecCCCcc
Confidence 65433 34677888765311 001 1110 0001122433 3444432222 34677777777665
Q ss_pred CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCC--------cEEEE
Q 003878 396 DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARRED--------SVVFI 467 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~--------~~l~~ 467 (789)
.+++.|. ..+..+.|.+.+.|+++.++|+ .|.+|....+.....+....-.|..+.|+|.+ +..+.
T Consensus 353 --~t~~GH~--g~V~alk~n~tg~LLaS~SdD~--TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~ 426 (524)
T KOG0273|consen 353 --KTFIGHH--GEVNALKWNPTGSLLASCSDDG--TLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLA 426 (524)
T ss_pred --eeeeccc--CceEEEEECCCCceEEEecCCC--eeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEE
Confidence 5666654 5678888987788999999998 67777765444434554443333344455443 32332
Q ss_pred EEcCCCCCcEEEEEECCCCC
Q 003878 468 SFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 468 ~~ss~~~P~~ly~~dl~tg~ 487 (789)
+. + .-.++..||...+.
T Consensus 427 sa-s--~dstV~lwdv~~gv 443 (524)
T KOG0273|consen 427 SA-S--FDSTVKLWDVESGV 443 (524)
T ss_pred Ee-e--cCCeEEEEEccCCc
Confidence 22 2 23578888888875
No 276
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.44 E-value=0.025 Score=64.19 Aligned_cols=279 Identities=17% Similarity=0.218 Sum_probs=146.9
Q ss_pred cEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccc
Q 003878 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRG 210 (789)
Q Consensus 131 ~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 210 (789)
...+.-++++|.|-.|| .|+-...++|||++.+..+. .+.+. +| +.-+..+-|+-. |
T Consensus 105 e~Pvi~ma~~~~g~LlA-----tggaD~~v~VWdi~~~~~th-~fkG~-------gG----vVssl~F~~~~~-----~- 161 (775)
T KOG0319|consen 105 EAPVITMAFDPTGTLLA-----TGGADGRVKVWDIKNGYCTH-SFKGH-------GG----VVSSLLFHPHWN-----R- 161 (775)
T ss_pred CCCeEEEEEcCCCceEE-----eccccceEEEEEeeCCEEEE-EecCC-------Cc----eEEEEEeCCccc-----h-
Confidence 33455677899997666 45567799999999886543 22221 11 122223334432 1
Q ss_pred ceeeEEEeeeccccceeeeeeec-----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEE
Q 003878 211 IFFFFYLFSLVKSTIYSFWSVVS-----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYY 279 (789)
Q Consensus 211 ~~~~~~~~~s~~~g~~~l~~~~~-----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (789)
.+|+++.-+++-.+|.+.. .....++++++|+..+++...+. .+.+
T Consensus 162 ----~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDk-------------------vi~v 218 (775)
T KOG0319|consen 162 ----WLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDK-------------------VIIV 218 (775)
T ss_pred ----hheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCc-------------------EEEE
Confidence 5789999999999999884 22357899999999998765432 3444
Q ss_pred EECCCCCCCcEE-EEecCC-------------------------------------------CCeeEEEEEEecCCcEEE
Q 003878 280 HFLGTKQSEDIL-CWKDPE-------------------------------------------HPKYIFSGHVTEDGQYLV 315 (789)
Q Consensus 280 ~~lg~~~~~~~~-~~~~~~-------------------------------------------~~~~~~~~~~SpDG~~l~ 315 (789)
|++-+-....++ +|+.-+ .+..........+++.++
T Consensus 219 wd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~ 298 (775)
T KOG0319|consen 219 WDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLL 298 (775)
T ss_pred eehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEE
Confidence 444211100000 011000 000000111122222222
Q ss_pred EEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccce---eEEEecCCCEEEEEECCCCCCceEEEEECC
Q 003878 316 MCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ---YEVIANDDTVFTFLTNKDAPKYKIIRVDLK 392 (789)
Q Consensus 316 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~ 392 (789)
+++ ...++++|.+++. +.+...++..+ ..++.|+.+++++.||. +..+|| ++.
T Consensus 299 vta------eQnl~l~d~~~l~--------------i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs--~~lr~y--~~~ 354 (775)
T KOG0319|consen 299 VTA------EQNLFLYDEDELT--------------IVKQIVGYNDEILDMKFLGPEESHLAVATNS--PELRLY--TLP 354 (775)
T ss_pred EEc------cceEEEEEccccE--------------EehhhcCCchhheeeeecCCccceEEEEeCC--CceEEE--ecC
Confidence 222 2335555554421 11112233222 23578888999999986 456676 776
Q ss_pred CCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCce--eeecccCCeeEEEeecccCCcEEEEEEc
Q 003878 393 EPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSL--LHQLPIEIGSVNAISARREDSVVFISFT 470 (789)
Q Consensus 393 ~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~--~~~l~~~~~~v~~~s~s~d~~~l~~~~s 470 (789)
+.. .+ +++... ..+-++.....+.++++.+.|..-.||+++-+.++. ......+..++..++.+..+..++++.+
T Consensus 355 ~~~-c~-ii~GH~-e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS 431 (775)
T KOG0319|consen 355 TSY-CQ-IIPGHT-EAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVS 431 (775)
T ss_pred CCc-eE-EEeCch-hheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEec
Confidence 665 34 554433 345566643436688888888755555553221211 1122223555666666666666666554
Q ss_pred CCCCCcEEEEEECCC
Q 003878 471 SFLIPGIVYQCNLKT 485 (789)
Q Consensus 471 s~~~P~~ly~~dl~t 485 (789)
+ -.++-.|++..
T Consensus 432 ~---D~tlK~W~l~~ 443 (775)
T KOG0319|consen 432 Q---DCTLKLWDLPK 443 (775)
T ss_pred C---CceEEEecCCC
Confidence 3 34566666543
No 277
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.41 E-value=0.027 Score=60.15 Aligned_cols=192 Identities=15% Similarity=0.129 Sum_probs=110.6
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccce
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIF 212 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 212 (789)
.+..+++.|.|+|+..+.+ ...+-+.|+.+|..+.......+
T Consensus 305 ~V~~ls~h~tgeYllsAs~-----d~~w~Fsd~~~g~~lt~vs~~~s--------------------------------- 346 (506)
T KOG0289|consen 305 PVTGLSLHPTGEYLLSASN-----DGTWAFSDISSGSQLTVVSDETS--------------------------------- 346 (506)
T ss_pred cceeeeeccCCcEEEEecC-----CceEEEEEccCCcEEEEEeeccc---------------------------------
Confidence 3678889999999986544 45788889999965532211100
Q ss_pred eeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEE
Q 003878 213 FFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILC 292 (789)
Q Consensus 213 ~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~ 292 (789)
+....+.++.|||-- |... ..+..+.+|++-.+. .+.-
T Consensus 347 ---------------------~v~~ts~~fHpDgLi--fgtg-----------------t~d~~vkiwdlks~~--~~a~ 384 (506)
T KOG0289|consen 347 ---------------------DVEYTSAAFHPDGLI--FGTG-----------------TPDGVVKIWDLKSQT--NVAK 384 (506)
T ss_pred ---------------------cceeEEeeEcCCceE--Eecc-----------------CCCceEEEEEcCCcc--cccc
Confidence 003578999999843 3321 123468888886543 2233
Q ss_pred EecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCE
Q 003878 293 WKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTV 372 (789)
Q Consensus 293 ~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~ 372 (789)
|.. +..-+..++||.+|=||+..+.+ ..|.++|+...+ ..+-..+-......-..+...|++
T Consensus 385 Fpg--ht~~vk~i~FsENGY~Lat~add-----~~V~lwDLRKl~-----------n~kt~~l~~~~~v~s~~fD~SGt~ 446 (506)
T KOG0289|consen 385 FPG--HTGPVKAISFSENGYWLATAADD-----GSVKLWDLRKLK-----------NFKTIQLDEKKEVNSLSFDQSGTY 446 (506)
T ss_pred CCC--CCCceeEEEeccCceEEEEEecC-----CeEEEEEehhhc-----------ccceeeccccccceeEEEcCCCCe
Confidence 333 34446689999999999987753 238999997632 111111212211112236667888
Q ss_pred EEEEECCCCCCceEEEEECCCCCCeEEeccCCCCcee-eeEEEecCCEEEEEEEeC
Q 003878 373 FTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVL-ESATAVNLNQMIVSYLSD 427 (789)
Q Consensus 373 l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i-~~v~~~~~~~lv~~~~~~ 427 (789)
+.+. +..-+||.+.-.+.+ |+.+..-....-+ ..+.+.....+++...-+
T Consensus 447 L~~~----g~~l~Vy~~~k~~k~-W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd 497 (506)
T KOG0289|consen 447 LGIA----GSDLQVYICKKKTKS-WTEIKELADHSGLSTGVRFGEHAQYLASTSMD 497 (506)
T ss_pred EEee----cceeEEEEEeccccc-ceeeehhhhcccccceeeecccceEEeeccch
Confidence 7764 345788888866655 8776544332213 333333323444444433
No 278
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.41 E-value=0.12 Score=54.26 Aligned_cols=234 Identities=10% Similarity=-0.010 Sum_probs=115.7
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
+..-.+...+||||++|.-+-+.....+..|-|||++.+-.....+.. +.-
T Consensus 49 gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s------~GI----------------------- 99 (305)
T PF07433_consen 49 GRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPS------HGI----------------------- 99 (305)
T ss_pred CCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecC------CCc-----------------------
Confidence 444467788999999987665555556789999999944222111111 111
Q ss_pred cceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCcc-ccCCcccEEEEEECCCCCCC
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE-TDSNLYHEFYYHFLGTKQSE 288 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~lg~~~~~ 288 (789)
....+.|.|||++|++.-.. -.+-++.+.... -+.-.+. |.+.+..++.--
T Consensus 100 --------------------------GPHel~l~pDG~tLvVANGG-I~Thpd~GR~kLNl~tM~ps-L~~ld~~sG~ll 151 (305)
T PF07433_consen 100 --------------------------GPHELLLMPDGETLVVANGG-IETHPDSGRAKLNLDTMQPS-LVYLDARSGALL 151 (305)
T ss_pred --------------------------ChhhEEEcCCCCEEEEEcCC-CccCcccCceecChhhcCCc-eEEEecCCCcee
Confidence 13568899999999875321 111011100000 0111233 444444443322
Q ss_pred cEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCC--ceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEE
Q 003878 289 DILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDP--VNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVI 366 (789)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~--~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 366 (789)
++.......+...+.-+++++||.-++-....+... ..-|.+..-.. + +..+. . +........++..+. .+
T Consensus 152 ~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~-~--~~~~~-~--p~~~~~~l~~Y~gSI-a~ 224 (305)
T PF07433_consen 152 EQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG-A--LRLLP-A--PEEQWRRLNGYIGSI-AA 224 (305)
T ss_pred eeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC-c--ceecc-C--ChHHHHhhCCceEEE-EE
Confidence 222221122333466788999998776655544321 12233332221 0 00000 0 000001112232222 36
Q ss_pred ecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECC
Q 003878 367 ANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLK 438 (789)
Q Consensus 367 s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~ 438 (789)
+.+|+.+++.+-++ ..+..+|.+++. +...++-. ...+++..+ +.++++. |...+...+..
T Consensus 225 ~~~g~~ia~tsPrG---g~~~~~d~~tg~-~~~~~~l~---D~cGva~~~-~~f~~ss---G~G~~~~~~~~ 285 (305)
T PF07433_consen 225 DRDGRLIAVTSPRG---GRVAVWDAATGR-LLGSVPLP---DACGVAPTD-DGFLVSS---GQGQLIRLSPD 285 (305)
T ss_pred eCCCCEEEEECCCC---CEEEEEECCCCC-EeeccccC---ceeeeeecC-CceEEeC---CCccEEEccCc
Confidence 77888888877664 578888998886 44444333 356777776 4433322 23345554443
No 279
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=97.31 E-value=0.013 Score=60.28 Aligned_cols=180 Identities=14% Similarity=0.027 Sum_probs=95.2
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCC-c--EEEEecCCC-CeeEEEEEEecC-Cc
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSE-D--ILCWKDPEH-PKYIFSGHVTED-GQ 312 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~-~--~~~~~~~~~-~~~~~~~~~SpD-G~ 312 (789)
.++.|||||.+||- +..+.|.++++.-+... + ..++..... ...+.-+++||- .+
T Consensus 162 hsL~Fs~DGeqlfa--------------------GykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~ 221 (406)
T KOG2919|consen 162 HSLQFSPDGEQLFA--------------------GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSK 221 (406)
T ss_pred eeEEecCCCCeEee--------------------cccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCc
Confidence 68999999999983 34445666666322211 1 112221111 122345678884 44
Q ss_pred EEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec-cccceeEEEecCCCEEEEEECCCCCCceEEEEEC
Q 003878 313 YLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDL 391 (789)
Q Consensus 313 ~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl 391 (789)
.++..+... ...||-.+-. .|+..+.. +.....-.|.+||.+|+.-+.+ .-+|..+|+
T Consensus 222 ~~a~gsY~q---~~giy~~~~~---------------~pl~llggh~gGvThL~~~edGn~lfsGaRk---~dkIl~WDi 280 (406)
T KOG2919|consen 222 TLAVGSYGQ---RVGIYNDDGR---------------RPLQLLGGHGGGVTHLQWCEDGNKLFSGARK---DDKILCWDI 280 (406)
T ss_pred ceeeecccc---eeeeEecCCC---------------CceeeecccCCCeeeEEeccCcCeecccccC---CCeEEEEee
Confidence 666655432 2445543211 12222222 1122234589999998854333 357999998
Q ss_pred CCCCCeEEec---cCCC--CceeeeEEEecCCEEEEEEEeCCeEEEEEEECCC-CceeeecccCCeeEEEeecccCCc
Q 003878 392 KEPNDWFEVI---PEAE--RDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKN-GSLLHQLPIEIGSVNAISARREDS 463 (789)
Q Consensus 392 ~~~~~~~~l~---~~~~--~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~t-G~~~~~l~~~~~~v~~~s~s~d~~ 463 (789)
..-. .+|. .+.. .+.| -+.+.+.+.++++...+| .|.+||+++ |..+..+......+.++++.|-=.
T Consensus 281 R~~~--~pv~~L~rhv~~TNQRI-~FDld~~~~~LasG~tdG--~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mp 353 (406)
T KOG2919|consen 281 RYSR--DPVYALERHVGDTNQRI-LFDLDPKGEILASGDTDG--SVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMP 353 (406)
T ss_pred hhcc--chhhhhhhhccCccceE-EEecCCCCceeeccCCCc--cEEEEecCCCCCcccccccccccccceecCcccc
Confidence 7543 1222 1211 1222 234445567888887776 688899986 554222222255566777776544
No 280
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=97.31 E-value=0.025 Score=60.85 Aligned_cols=220 Identities=13% Similarity=0.119 Sum_probs=119.8
Q ss_pred EEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccccee
Q 003878 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFF 213 (789)
Q Consensus 134 ~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 213 (789)
+..+.-+|+|.+|+ .|....+||+|.+.||+.+-. +...
T Consensus 84 v~al~s~n~G~~l~-----ag~i~g~lYlWelssG~LL~v-~~aH----------------------------------- 122 (476)
T KOG0646|consen 84 VHALASSNLGYFLL-----AGTISGNLYLWELSSGILLNV-LSAH----------------------------------- 122 (476)
T ss_pred eeeeecCCCceEEE-----eecccCcEEEEEeccccHHHH-HHhh-----------------------------------
Confidence 56788999999998 455677999999999976531 1111
Q ss_pred eEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCC---C----C
Q 003878 214 FFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGT---K----Q 286 (789)
Q Consensus 214 ~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~---~----~ 286 (789)
|| ...-+.||.||+.|+-..++. .|..|.+-. + .
T Consensus 123 ------------YQ--------~ITcL~fs~dgs~iiTgskDg-------------------~V~vW~l~~lv~a~~~~~ 163 (476)
T KOG0646|consen 123 ------------YQ--------SITCLKFSDDGSHIITGSKDG-------------------AVLVWLLTDLVSADNDHS 163 (476)
T ss_pred ------------cc--------ceeEEEEeCCCcEEEecCCCc-------------------cEEEEEEEeecccccCCC
Confidence 00 124567787877776443321 233333211 0 1
Q ss_pred CCcEEEEecCCCCeeEEEEEEecCCcEE-EEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEE
Q 003878 287 SEDILCWKDPEHPKYIFSGHVTEDGQYL-VMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEV 365 (789)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~SpDG~~l-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 365 (789)
.+....|. +|...+.++..++.|-.- +++++. ...+.++|+..+. .+...+......-..
T Consensus 164 ~~p~~~f~--~HtlsITDl~ig~Gg~~~rl~TaS~----D~t~k~wdlS~g~-------------LLlti~fp~si~av~ 224 (476)
T KOG0646|consen 164 VKPLHIFS--DHTLSITDLQIGSGGTNARLYTASE----DRTIKLWDLSLGV-------------LLLTITFPSSIKAVA 224 (476)
T ss_pred ccceeeec--cCcceeEEEEecCCCccceEEEecC----CceEEEEEeccce-------------eeEEEecCCcceeEE
Confidence 12223333 233334555555554221 233321 3457778887752 122222222112233
Q ss_pred EecCCCEEEEEECCCCCCceEEEEECCCC----------------CCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCe
Q 003878 366 IANDDTVFTFLTNKDAPKYKIIRVDLKEP----------------NDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVK 429 (789)
Q Consensus 366 ~s~dG~~l~~~tn~~~~~~~L~~~dl~~~----------------~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~ 429 (789)
.+|-+..+|+-+. .+.|+..++.+- .....++.+.....|.-++++-|+.+++++..+|
T Consensus 225 lDpae~~~yiGt~----~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg- 299 (476)
T KOG0646|consen 225 LDPAERVVYIGTE----EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDG- 299 (476)
T ss_pred EcccccEEEecCC----cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCC-
Confidence 6776666665332 345555544210 1234455555434677778877788999999998
Q ss_pred EEEEEEECCCCceeeecccCCeeEEEeec
Q 003878 430 YVLQIRDLKNGSLLHQLPIEIGSVNAISA 458 (789)
Q Consensus 430 ~~L~~~dl~tG~~~~~l~~~~~~v~~~s~ 458 (789)
.+.+||..+.+.++.+..-.+.|+.+..
T Consensus 300 -~VcvWdi~S~Q~iRtl~~~kgpVtnL~i 327 (476)
T KOG0646|consen 300 -KVCVWDIYSKQCIRTLQTSKGPVTNLQI 327 (476)
T ss_pred -CEEEEecchHHHHHHHhhhccccceeEe
Confidence 7899999866666666532344544443
No 281
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.0015 Score=77.01 Aligned_cols=212 Identities=13% Similarity=0.062 Sum_probs=123.0
Q ss_pred ccceEEEEeCCcE---EEEEEccCCCCCCCCCCCccccCCcccEEEEEECCC--CCCCcEEEEecCCCCeeEEEEEEecC
Q 003878 236 KFSSIAWTHDSKG---FFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGT--KQSEDILCWKDPEHPKYIFSGHVTED 310 (789)
Q Consensus 236 ~~~~~~wspDg~~---i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~--~~~~~~~~~~~~~~~~~~~~~~~SpD 310 (789)
+|..++|++-|+. |+... ..+-.|-+++... ...+..++.....+...+.++.+.+.
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG------------------~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~ 127 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGG------------------LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPF 127 (1049)
T ss_pred cceeeeecccCCCccceeecc------------------ccCCceEEecchhhccCcchHHHhhhcccCCceeeeecccc
Confidence 5788999997776 34332 2223355555443 12222233333445566778999999
Q ss_pred CcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc--cceeEEEecCCCEEEEEECCCCCCceEEE
Q 003878 311 GQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF--DAQYEVIANDDTVFTFLTNKDAPKYKIIR 388 (789)
Q Consensus 311 G~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~s~dG~~l~~~tn~~~~~~~L~~ 388 (789)
+.-++.+. +.+.+|+++|+.... . +........ +.....|-..-++++-. ...+++...
T Consensus 128 q~nlLASG----a~~geI~iWDlnn~~-t-----------P~~~~~~~~~~eI~~lsWNrkvqhILAS---~s~sg~~~i 188 (1049)
T KOG0307|consen 128 QGNLLASG----ADDGEILIWDLNKPE-T-----------PFTPGSQAPPSEIKCLSWNRKVSHILAS---GSPSGRAVI 188 (1049)
T ss_pred CCceeecc----CCCCcEEEeccCCcC-C-----------CCCCCCCCCcccceEeccchhhhHHhhc---cCCCCCcee
Confidence 88444332 125789999998721 1 111100000 11111232222233321 235678899
Q ss_pred EECCCCCCeEEeccCCCCceeeeEEEecC--CEEEEEEEeCCeEEEEEEECCCC-ceeeecccCCeeEEEeecccCCcEE
Q 003878 389 VDLKEPNDWFEVIPEAERDVLESATAVNL--NQMIVSYLSDVKYVLQIRDLKNG-SLLHQLPIEIGSVNAISARREDSVV 465 (789)
Q Consensus 389 ~dl~~~~~~~~l~~~~~~~~i~~v~~~~~--~~lv~~~~~~g~~~L~~~dl~tG-~~~~~l~~~~~~v~~~s~s~d~~~l 465 (789)
+|++..+....+...........++|.++ .++++...++..+.|.+||+.-- ...+.++.+...+-+++|.+.+.++
T Consensus 189 WDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~l 268 (1049)
T KOG0307|consen 189 WDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRL 268 (1049)
T ss_pred ccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchh
Confidence 99987642222322222244678899985 46888888888889999997632 2334555555556678898877777
Q ss_pred EEEEcCCCCCcEEEEEECCCCC
Q 003878 466 FISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 466 ~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
+++ -..-.+++.+|.+|++
T Consensus 269 llS---sgkD~~ii~wN~~tgE 287 (1049)
T KOG0307|consen 269 LLS---SGKDNRIICWNPNTGE 287 (1049)
T ss_pred hhc---ccCCCCeeEecCCCce
Confidence 764 3556789999999985
No 282
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=97.27 E-value=0.001 Score=67.88 Aligned_cols=103 Identities=17% Similarity=0.039 Sum_probs=65.2
Q ss_pred ccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCC
Q 003878 538 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 617 (789)
Q Consensus 538 ~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~ 617 (789)
.|.++++||.++.................+ |.++.+|.||.|... . . ........+-++.+.+.-. .
T Consensus 21 ~~~i~~~hg~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~g~g~s~----~---~---~~~~~~~~~~~~~~~~~~~--~ 87 (282)
T COG0596 21 GPPLVLLHGFPGSSSVWRPVFKVLPALAAR-YRVIAPDLRGHGRSD----P---A---GYSLSAYADDLAALLDALG--L 87 (282)
T ss_pred CCeEEEeCCCCCchhhhHHHHHHhhccccc-eEEEEecccCCCCCC----c---c---cccHHHHHHHHHHHHHHhC--C
Confidence 559999999886654433311111111113 999999999877543 0 0 1111222333333333311 2
Q ss_pred CcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcc
Q 003878 618 RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 653 (789)
Q Consensus 618 ~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~ 653 (789)
.++.+.|+|+||.++..++.++|++++++|...+..
T Consensus 88 ~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~~~ 123 (282)
T COG0596 88 EKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAP 123 (282)
T ss_pred CceEEEEecccHHHHHHHHHhcchhhheeeEecCCC
Confidence 349999999999999999999999999998877543
No 283
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.26 E-value=0.061 Score=57.34 Aligned_cols=151 Identities=16% Similarity=0.165 Sum_probs=87.1
Q ss_pred EEEEecCCcEEEEEEE---c-CC--CCceEEEEEECCCCCCCcccccccCCCCccEeeecc-ccc-eeEEEecCCCEEEE
Q 003878 304 SGHVTEDGQYLVMCIE---E-NC--DPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG-FDA-QYEVIANDDTVFTF 375 (789)
Q Consensus 304 ~~~~SpDG~~l~~~~~---~-~~--~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~-~~~-~~~~~s~dG~~l~~ 375 (789)
.....|||+.-+-... . .. .....||.++..++ ..++..+ ... .--.|||||+.+|+
T Consensus 115 D~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~---------------~~~l~~~~~~~~NGla~SpDg~tly~ 179 (307)
T COG3386 115 DGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGG---------------VVRLLDDDLTIPNGLAFSPDGKTLYV 179 (307)
T ss_pred ceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCC---------------EEEeecCcEEecCceEECCCCCEEEE
Confidence 4567888876543332 0 11 12346888886432 1222222 111 11349999999997
Q ss_pred EECCCCCCceEEEEECCC--CC---C-eEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC
Q 003878 376 LTNKDAPKYKIIRVDLKE--PN---D-WFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE 449 (789)
Q Consensus 376 ~tn~~~~~~~L~~~dl~~--~~---~-~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~ 449 (789)
.-. ...+|++++++. +. . ....... +...-.++....++.+++....+| ..|.+++++ |+....+.+|
T Consensus 180 aDT---~~~~i~r~~~d~~~g~~~~~~~~~~~~~-~~G~PDG~~vDadG~lw~~a~~~g-~~v~~~~pd-G~l~~~i~lP 253 (307)
T COG3386 180 ADT---PANRIHRYDLDPATGPIGGRRGFVDFDE-EPGLPDGMAVDADGNLWVAAVWGG-GRVVRFNPD-GKLLGEIKLP 253 (307)
T ss_pred EeC---CCCeEEEEecCcccCccCCcceEEEccC-CCCCCCceEEeCCCCEEEecccCC-ceEEEECCC-CcEEEEEECC
Confidence 533 457899998762 11 1 1122222 234456777777566765544443 578999998 8887888887
Q ss_pred CeeEEEeec-ccCCcEEEEEEcCCCCC
Q 003878 450 IGSVNAISA-RREDSVVFISFTSFLIP 475 (789)
Q Consensus 450 ~~~v~~~s~-s~d~~~l~~~~ss~~~P 475 (789)
...++...+ .++.+.|+++......+
T Consensus 254 ~~~~t~~~FgG~~~~~L~iTs~~~~~~ 280 (307)
T COG3386 254 VKRPTNPAFGGPDLNTLYITSARSGMS 280 (307)
T ss_pred CCCCccceEeCCCcCEEEEEecCCCCC
Confidence 433333332 35678888877666554
No 284
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=97.22 E-value=0.0023 Score=62.10 Aligned_cols=148 Identities=11% Similarity=0.099 Sum_probs=88.7
Q ss_pred EEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCc
Q 003878 540 CLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRK 619 (789)
Q Consensus 540 ~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~ 619 (789)
++|++-|-.|. ..++......|+++|+.|+-+|-+- .-|. ....+.+-.|+...+++..++- ..++
T Consensus 4 ~~v~~SGDgGw---~~~d~~~a~~l~~~G~~VvGvdsl~-----Yfw~----~rtP~~~a~Dl~~~i~~y~~~w--~~~~ 69 (192)
T PF06057_consen 4 LAVFFSGDGGW---RDLDKQIAEALAKQGVPVVGVDSLR-----YFWS----ERTPEQTAADLARIIRHYRARW--GRKR 69 (192)
T ss_pred EEEEEeCCCCc---hhhhHHHHHHHHHCCCeEEEechHH-----HHhh----hCCHHHHHHHHHHHHHHHHHHh--CCce
Confidence 34455443332 2556666777888999999999542 1122 2233455688888888877762 3469
Q ss_pred EEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCC
Q 003878 620 LCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQN 699 (789)
Q Consensus 620 i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~ 699 (789)
+.++|.|+|+-++-.+.++-|.-.++-|..+-++.+.....|.... ...+|.+... .++.+...+.++
T Consensus 70 vvLiGYSFGADvlP~~~nrLp~~~r~~v~~v~Ll~p~~~~dFeihv--~~wlg~~~~~------~~~~~~pei~~l---- 137 (192)
T PF06057_consen 70 VVLIGYSFGADVLPFIYNRLPAALRARVAQVVLLSPSTTADFEIHV--SGWLGMGGDD------AAYPVIPEIAKL---- 137 (192)
T ss_pred EEEEeecCCchhHHHHHhhCCHHHHhheeEEEEeccCCcceEEEEh--hhhcCCCCCc------ccCCchHHHHhC----
Confidence 9999999999998898888887555555554444433332222111 1112333221 123344444454
Q ss_pred CCCCCCCCeEEEEecCCCC
Q 003878 700 PDKPFQYPSTLLLTADHDD 718 (789)
Q Consensus 700 ~~~~~~~pp~Li~~g~~D~ 718 (789)
...|++++.|.++.
T Consensus 138 -----~~~~v~CiyG~~E~ 151 (192)
T PF06057_consen 138 -----PPAPVQCIYGEDED 151 (192)
T ss_pred -----CCCeEEEEEcCCCC
Confidence 34699999998764
No 285
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.033 Score=61.43 Aligned_cols=188 Identities=11% Similarity=0.096 Sum_probs=112.7
Q ss_pred EEEeEEeCCC--CcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccc
Q 003878 133 ALIKVSVSED--AKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRG 210 (789)
Q Consensus 133 ~~~~~~~SpD--g~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 210 (789)
.++.+++||- .-.||+-+-..++--..++|+-..-+...+ .+ .+--|...|.-.+.|=..
T Consensus 167 ~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~-~~-----------------a~ksFFkadkvqm~WN~~ 228 (566)
T KOG2315|consen 167 GITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQ-PV-----------------ANKSFFKADKVQMKWNKL 228 (566)
T ss_pred ceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccc-hh-----------------hhccccccceeEEEeccC
Confidence 3566677775 445665554455556678887765221111 11 111233344445666666
Q ss_pred ceeeEEEeeeccccce-------eeeeeec-------ccc----cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCC
Q 003878 211 IFFFFYLFSLVKSTIY-------SFWSVVS-------QFK----FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSN 272 (789)
Q Consensus 211 ~~~~~~~~~s~~~g~~-------~l~~~~~-------~~~----~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~ 272 (789)
+-..=+|.++|-+.+. .||-+.. ++. +..+.|+|+|+.|+++-.-
T Consensus 229 gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGf----------------- 291 (566)
T KOG2315|consen 229 GTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGF----------------- 291 (566)
T ss_pred CceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEec-----------------
Confidence 6666778888866643 5666655 222 4678999999999887533
Q ss_pred cccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCcc
Q 003878 273 LYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPF 352 (789)
Q Consensus 273 ~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~ 352 (789)
-|.++-++++... .+++-++.+.. .+-|+|-|++|++..-... ..++-++|+.+.+ .+
T Consensus 292 MPAkvtifnlr~~-----~v~df~egpRN--~~~fnp~g~ii~lAGFGNL--~G~mEvwDv~n~K-------------~i 349 (566)
T KOG2315|consen 292 MPAKVTIFNLRGK-----PVFDFPEGPRN--TAFFNPHGNIILLAGFGNL--PGDMEVWDVPNRK-------------LI 349 (566)
T ss_pred ccceEEEEcCCCC-----EeEeCCCCCcc--ceEECCCCCEEEEeecCCC--CCceEEEeccchh-------------hc
Confidence 3455777777543 45555544432 4678999999999876554 3455667776621 01
Q ss_pred EeeeccccceeEEEecCCCEEEEEEC
Q 003878 353 VKLIDGFDAQYEVIANDDTVFTFLTN 378 (789)
Q Consensus 353 ~~l~~~~~~~~~~~s~dG~~l~~~tn 378 (789)
.. ....+..+..|+|||++|+..|.
T Consensus 350 ~~-~~a~~tt~~eW~PdGe~flTATT 374 (566)
T KOG2315|consen 350 AK-FKAANTTVFEWSPDGEYFLTATT 374 (566)
T ss_pred cc-cccCCceEEEEcCCCcEEEEEec
Confidence 11 11223356679999999886665
No 286
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.21 E-value=0.045 Score=56.33 Aligned_cols=227 Identities=16% Similarity=0.122 Sum_probs=123.7
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
.++..+++| |.++| +|+..-+|+|+|+.+...+...+... |-..+| ..++.
T Consensus 44 ~sitavAVs--~~~~a-----SGssDetI~IYDm~k~~qlg~ll~Ha--------gsitaL----~F~~~---------- 94 (362)
T KOG0294|consen 44 GSITALAVS--GPYVA-----SGSSDETIHIYDMRKRKQLGILLSHA--------GSITAL----KFYPP---------- 94 (362)
T ss_pred cceeEEEec--ceeEe-----ccCCCCcEEEEeccchhhhcceeccc--------cceEEE----EecCC----------
Confidence 445555554 77877 56667799999999886544222111 100000 00110
Q ss_pred eeeEEEeeeccccceeeeeeec----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEE
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVS----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHF 281 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 281 (789)
++..-|.++.++|..-+|.... .-++..++-.|-|| |+.+- ++...+..|+
T Consensus 95 ~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~K-LALsV------------------g~D~~lr~WN 155 (362)
T KOG0294|consen 95 LSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGK-LALSV------------------GGDQVLRTWN 155 (362)
T ss_pred cchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCc-eEEEE------------------cCCceeeeeh
Confidence 0012377888999999998766 22246677777775 44442 2334577777
Q ss_pred CCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccc
Q 003878 282 LGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA 361 (789)
Q Consensus 282 lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~ 361 (789)
|-.+...-++ ...... ..+.|+|.|.+.++...+ .-+||-.+.+.. +..+...-..
T Consensus 156 LV~Gr~a~v~--~L~~~a---t~v~w~~~Gd~F~v~~~~----~i~i~q~d~A~v---------------~~~i~~~~r~ 211 (362)
T KOG0294|consen 156 LVRGRVAFVL--NLKNKA---TLVSWSPQGDHFVVSGRN----KIDIYQLDNASV---------------FREIENPKRI 211 (362)
T ss_pred hhcCccceee--ccCCcc---eeeEEcCCCCEEEEEecc----EEEEEecccHhH---------------hhhhhccccc
Confidence 7554333222 222222 248999999988877643 244555544331 1111111000
Q ss_pred eeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEec--CCEEEEEEEeCCeEEEEEEECCC
Q 003878 362 QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN--LNQMIVSYLSDVKYVLQIRDLKN 439 (789)
Q Consensus 362 ~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~--~~~lv~~~~~~g~~~L~~~dl~t 439 (789)
....| -++..+++ +..+..+...|.+.......+..|. ..+.++.+.. ...++++.+.+| .|.+||++.
T Consensus 212 l~~~~-l~~~~L~v----G~d~~~i~~~D~ds~~~~~~~~AH~--~RVK~i~~~~~~~~~~lvTaSSDG--~I~vWd~~~ 282 (362)
T KOG0294|consen 212 LCATF-LDGSELLV----GGDNEWISLKDTDSDTPLTEFLAHE--NRVKDIASYTNPEHEYLVTASSDG--FIKVWDIDM 282 (362)
T ss_pred eeeee-cCCceEEE----ecCCceEEEeccCCCccceeeecch--hheeeeEEEecCCceEEEEeccCc--eEEEEEccc
Confidence 11112 24555553 2234557777766544345566665 4577777443 357888888888 677888764
No 287
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.21 E-value=0.16 Score=63.51 Aligned_cols=126 Identities=15% Similarity=0.108 Sum_probs=67.8
Q ss_pred EEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCC--CccEeee--cc------c-cceeEEEecCCCE
Q 003878 304 SGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGL--LPFVKLI--DG------F-DAQYEVIANDDTV 372 (789)
Q Consensus 304 ~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~--~~~~~l~--~~------~-~~~~~~~s~dG~~ 372 (789)
+++++|||++|++.... ++.|+++|++++.... +..++.. ......- ++ + ...-..++++|+
T Consensus 744 GIavspdG~~LYVADs~----n~~Irv~D~~tg~~~~--~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~- 816 (1057)
T PLN02919 744 GISLSPDLKELYIADSE----SSSIRALDLKTGGSRL--LAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ- 816 (1057)
T ss_pred EEEEeCCCCEEEEEECC----CCeEEEEECCCCcEEE--EEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-
Confidence 57899999998876432 4679999987642100 0000000 0000000 00 0 001123677776
Q ss_pred EEEEECCCCCCceEEEEECCCCCCeEEeccCCC------------CceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCC
Q 003878 373 FTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAE------------RDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNG 440 (789)
Q Consensus 373 l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~------------~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG 440 (789)
+|+. + ..+.+|.++|.+++. ...+..... -....++++++++++++.-..+ ..|+++|++++
T Consensus 817 LYVA-D--s~N~rIrviD~~tg~-v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N--n~Irvid~~~~ 890 (1057)
T PLN02919 817 IYVA-D--SYNHKIKKLDPATKR-VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN--SLIRYLDLNKG 890 (1057)
T ss_pred EEEE-E--CCCCEEEEEECCCCe-EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC--CEEEEEECCCC
Confidence 5543 3 246789999987764 333332110 0123467787767777765544 48999999876
Q ss_pred ce
Q 003878 441 SL 442 (789)
Q Consensus 441 ~~ 442 (789)
+.
T Consensus 891 ~~ 892 (1057)
T PLN02919 891 EA 892 (1057)
T ss_pred cc
Confidence 54
No 288
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.18 E-value=0.019 Score=57.20 Aligned_cols=199 Identities=11% Similarity=0.076 Sum_probs=110.7
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
..++||+....++++.... -.+.+++++. .+..+.+|++... -+.++.|++-.++.++.
T Consensus 64 fdV~Wse~~e~~~~~a~GD------------------GSLrl~d~~~-~s~Pi~~~kEH~~--EV~Svdwn~~~r~~~lt 122 (311)
T KOG0277|consen 64 FDVAWSENHENQVIAASGD------------------GSLRLFDLTM-PSKPIHKFKEHKR--EVYSVDWNTVRRRIFLT 122 (311)
T ss_pred eEeeecCCCcceEEEEecC------------------ceEEEeccCC-CCcchhHHHhhhh--heEEeccccccceeEEe
Confidence 6799999888777775322 2367777553 3455666766543 35688999988887776
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee-EEEecCCCEEEEEECCCCCCceEEEEECCCCCC
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND 396 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~ 396 (789)
+ ..+.+ |.+++..-. ..+..........| ..|+|.-.-++..+ .+++.+-.+|++.+..
T Consensus 123 s--SWD~T--iKLW~~~r~-------------~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~---Sgd~~l~lwdvr~~gk 182 (311)
T KOG0277|consen 123 S--SWDGT--IKLWDPNRP-------------NSVQTFNGHNSCIYQAAFSPHIPNLFASA---SGDGTLRLWDVRSPGK 182 (311)
T ss_pred e--ccCCc--eEeecCCCC-------------cceEeecCCccEEEEEecCCCCCCeEEEc---cCCceEEEEEecCCCc
Confidence 6 33223 444443321 11222222222234 34787543333222 2346677778776542
Q ss_pred eEEeccCCCCceeeeEEEec-CCEEEEEEEeCCeEEEEEEECCCCc-eeeecccCCeeEEEeecccCCcEEEEEEcCCCC
Q 003878 397 WFEVIPEAERDVLESATAVN-LNQMIVSYLSDVKYVLQIRDLKNGS-LLHQLPIEIGSVNAISARREDSVVFISFTSFLI 474 (789)
Q Consensus 397 ~~~l~~~~~~~~i~~v~~~~-~~~lv~~~~~~g~~~L~~~dl~tG~-~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~ 474 (789)
...+..+. .-+....|++ +..++++...|+ -|+.||+..=+ .+.+|..+...|..+.+||....++.+. |...
T Consensus 183 ~~~i~ah~--~Eil~cdw~ky~~~vl~Tg~vd~--~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSa-sYDm 257 (311)
T KOG0277|consen 183 FMSIEAHN--SEILCCDWSKYNHNVLATGGVDN--LVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASA-SYDM 257 (311)
T ss_pred eeEEEecc--ceeEeecccccCCcEEEecCCCc--eEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhc-cccc
Confidence 22232333 2345666776 467787777765 68899986322 2233433456778888888766555433 3333
Q ss_pred CcEEEEEECC
Q 003878 475 PGIVYQCNLK 484 (789)
Q Consensus 475 P~~ly~~dl~ 484 (789)
++..+|..
T Consensus 258 --T~riw~~~ 265 (311)
T KOG0277|consen 258 --TVRIWDPE 265 (311)
T ss_pred --eEEecccc
Confidence 34444444
No 289
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.17 E-value=0.048 Score=59.52 Aligned_cols=196 Identities=11% Similarity=0.030 Sum_probs=112.5
Q ss_pred cceEEEEeC--CcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCC-cEEEEecCCCCeeEEEEEEecCCcE
Q 003878 237 FSSIAWTHD--SKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSE-DILCWKDPEHPKYIFSGHVTEDGQY 313 (789)
Q Consensus 237 ~~~~~wspD--g~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~-~~~~~~~~~~~~~~~~~~~SpDG~~ 313 (789)
+..+.|||- +..|+|..-.. .+.+.++.++.++..... ...+++.. -..+.|-+.|++
T Consensus 176 i~dFsisP~~n~~~la~~tPEk--------------~~kpa~~~i~sIp~~s~l~tk~lfk~~-----~~qLkW~~~g~~ 236 (561)
T COG5354 176 ILDFSISPEGNHDELAYWTPEK--------------LNKPAMVRILSIPKNSVLVTKNLFKVS-----GVQLKWQVLGKY 236 (561)
T ss_pred eeeEEecCCCCCceEEEEcccc--------------CCCCcEEEEEEccCCCeeeeeeeEeec-----ccEEEEecCCce
Confidence 478899995 55677663211 456677777777632211 11223221 246889999999
Q ss_pred EEEEEEcCCC------CceEEEEEECCCCCCCcccccccCCCCccEeeecccccee-EEEecCCCEEEEEECCCCCCceE
Q 003878 314 LVMCIEENCD------PVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIANDDTVFTFLTNKDAPKYKI 386 (789)
Q Consensus 314 l~~~~~~~~~------~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dG~~l~~~tn~~~~~~~L 386 (789)
|++....+.. ..+.+|++++... ..+...... +... ..|+|+++.|.+++... -..+
T Consensus 237 ll~l~~t~~ksnKsyfgesnLyl~~~~e~------------~i~V~~~~~--~pVhdf~W~p~S~~F~vi~g~~--pa~~ 300 (561)
T COG5354 237 LLVLVMTHTKSNKSYFGESNLYLLRITER------------SIPVEKDLK--DPVHDFTWEPLSSRFAVISGYM--PASV 300 (561)
T ss_pred EEEEEEEeeecccceeccceEEEEeeccc------------ccceecccc--ccceeeeecccCCceeEEeccc--ccce
Confidence 9887654421 2367899988752 112221112 2222 24999999999887432 2456
Q ss_pred EEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeec-ccCCeeEEEeecccCCcEE
Q 003878 387 IRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQL-PIEIGSVNAISARREDSVV 465 (789)
Q Consensus 387 ~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l-~~~~~~v~~~s~s~d~~~l 465 (789)
...|+.+. .+-.+|+..... .-++... .++++..-.+-...+-+++.. |+- ..+ .+.....+...|+||+..+
T Consensus 301 s~~~lr~N--l~~~~Pe~~rNT-~~fsp~~-r~il~agF~nl~gni~i~~~~-~rf-~~~~~~~~~n~s~~~wspd~qF~ 374 (561)
T COG5354 301 SVFDLRGN--LRFYFPEQKRNT-IFFSPHE-RYILFAGFDNLQGNIEIFDPA-GRF-KVAGAFNGLNTSYCDWSPDGQFY 374 (561)
T ss_pred eecccccc--eEEecCCccccc-ccccCcc-cEEEEecCCccccceEEeccC-Cce-EEEEEeecCCceEeeccCCceEE
Confidence 66777653 455566654322 2233333 567776777767788889987 543 122 2221122234688999877
Q ss_pred EEEEcCCC
Q 003878 466 FISFTSFL 473 (789)
Q Consensus 466 ~~~~ss~~ 473 (789)
...+.|..
T Consensus 375 ~~~~ts~k 382 (561)
T COG5354 375 DTDTTSEK 382 (561)
T ss_pred EecCCCcc
Confidence 76665543
No 290
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.16 E-value=0.052 Score=56.52 Aligned_cols=35 Identities=14% Similarity=0.073 Sum_probs=26.6
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCC
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQ 168 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg 168 (789)
..+.++++||||+.+|+.. .+.+...|++....+.
T Consensus 24 ~~~~s~AvS~dg~~~A~v~--~~~~~~~L~~~~~~~~ 58 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVS--EGDGGRSLYVGPAGGP 58 (253)
T ss_pred ccccceEECCCCCeEEEEE--EcCCCCEEEEEcCCCc
Confidence 3467899999999999988 3334568888876554
No 291
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.028 Score=61.71 Aligned_cols=218 Identities=13% Similarity=0.035 Sum_probs=120.6
Q ss_pred EeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceec-ccccccccccccCccceeeeeecccc
Q 003878 120 LLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA-DALSWVCFCFSHSFGYFFHLTISLLN 198 (789)
Q Consensus 120 l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (789)
|+|..++..+ .+..++|||-+..|||=+-....--.++-++.+.+++.+. ..+-++
T Consensus 338 lld~Kslki~---gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnV-------------------- 394 (698)
T KOG2314|consen 338 LLDKKSLKIS---GIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNV-------------------- 394 (698)
T ss_pred eecccccCCc---cccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceee--------------------
Confidence 4444444332 3678899999999999876666556788899999987654 223333
Q ss_pred ccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEE
Q 003878 199 VPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFY 278 (789)
Q Consensus 199 ~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~ 278 (789)
. .-.+-|-..|++|++-...-++.. ....-.+-+|+
T Consensus 395 -s------------------------------------DckLhWQk~gdyLcvkvdR~tK~~-------~~g~f~n~eIf 430 (698)
T KOG2314|consen 395 -S------------------------------------DCKLHWQKSGDYLCVKVDRHTKSK-------VKGQFSNLEIF 430 (698)
T ss_pred -e------------------------------------ccEEEeccCCcEEEEEEEeecccc-------ccceEeeEEEE
Confidence 1 245789999999998655432210 00011223344
Q ss_pred EEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecc
Q 003878 279 YHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG 358 (789)
Q Consensus 279 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~ 358 (789)
+ +...+. .+.+.+..+ .+..++|-|.|...++.+.+....+-..|-+....+ + .. +....+.
T Consensus 431 r--ireKdI-pve~velke---~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~--~---------~~-lVk~~dk 492 (698)
T KOG2314|consen 431 R--IREKDI-PVEVVELKE---SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK--K---------PS-LVKELDK 492 (698)
T ss_pred E--eeccCC-Cceeeecch---heeeeeeccCCCeEEEEEccccccceeEEEeecCCC--c---------hh-hhhhhcc
Confidence 4 332221 122222222 245789999999988776554433334444443221 1 11 1111111
Q ss_pred ccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEE
Q 003878 359 FDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYL 425 (789)
Q Consensus 359 ~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~ 425 (789)
-......|+|.|+.+++.+- .+.++.|.-+|++-.+ .+ .+...++.....+.|.+.++.++..+
T Consensus 493 ~~~N~vfwsPkG~fvvva~l-~s~~g~l~F~D~~~a~-~k-~~~~~eh~~at~veWDPtGRYvvT~s 556 (698)
T KOG2314|consen 493 KFANTVFWSPKGRFVVVAAL-VSRRGDLEFYDTDYAD-LK-DTASPEHFAATEVEWDPTGRYVVTSS 556 (698)
T ss_pred cccceEEEcCCCcEEEEEEe-cccccceEEEecchhh-hh-hccCccccccccceECCCCCEEEEee
Confidence 11233469999987765543 3467889999876422 11 22222234456778888555555444
No 292
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.14 E-value=0.015 Score=65.85 Aligned_cols=153 Identities=13% Similarity=0.058 Sum_probs=89.0
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
.-.+..||||+.|+++--+ +++.++-+++- .--+.+|... --+.++.+|||++.++-
T Consensus 511 vL~v~~Spdgk~LaVsLLd-------------------nTVkVyflDtl-KFflsLYGHk---LPV~smDIS~DSklivT 567 (888)
T KOG0306|consen 511 VLCVSVSPDGKLLAVSLLD-------------------NTVKVYFLDTL-KFFLSLYGHK---LPVLSMDISPDSKLIVT 567 (888)
T ss_pred EEEEEEcCCCcEEEEEecc-------------------CeEEEEEecce-eeeeeecccc---cceeEEeccCCcCeEEe
Confidence 4678999999999987443 34444455442 1112233322 22457899999999886
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccc-eeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
.+.+. +-.+|=+|-.+ +-+.+...-+. ....|-| ..+++|.+.+ ...+-.||-+..+
T Consensus 568 gSADK---nVKiWGLdFGD---------------CHKS~fAHdDSvm~V~F~P-~~~~FFt~gK---D~kvKqWDg~kFe 625 (888)
T KOG0306|consen 568 GSADK---NVKIWGLDFGD---------------CHKSFFAHDDSVMSVQFLP-KTHLFFTCGK---DGKVKQWDGEKFE 625 (888)
T ss_pred ccCCC---ceEEeccccch---------------hhhhhhcccCceeEEEEcc-cceeEEEecC---cceEEeechhhhh
Confidence 65443 44565544432 11222332222 1233677 4677777655 4678889877655
Q ss_pred CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECC
Q 003878 396 DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLK 438 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~ 438 (789)
.++.+-.|. .-+...+.++++.++++.+.|- .|+.|...
T Consensus 626 ~iq~L~~H~--~ev~cLav~~~G~~vvs~shD~--sIRlwE~t 664 (888)
T KOG0306|consen 626 EIQKLDGHH--SEVWCLAVSPNGSFVVSSSHDK--SIRLWERT 664 (888)
T ss_pred hheeeccch--heeeeeEEcCCCCeEEeccCCc--eeEeeecc
Confidence 445554433 3355566777677888888775 46666543
No 293
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.12 E-value=0.072 Score=57.43 Aligned_cols=89 Identities=15% Similarity=0.153 Sum_probs=53.1
Q ss_pred CCCCceEEEEECCCCCC------eEEeccCC-C---CceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCc-eeeecc-
Q 003878 380 DAPKYKIIRVDLKEPND------WFEVIPEA-E---RDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGS-LLHQLP- 447 (789)
Q Consensus 380 ~~~~~~L~~~dl~~~~~------~~~l~~~~-~---~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~-~~~~l~- 447 (789)
++.++.|++|++...+. ...+.|.. + ...+.+++..++.-|+++.+.+|. |++|-..+|- .+..|.
T Consensus 344 GSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~--vrLW~i~~g~r~i~~l~~ 421 (479)
T KOG0299|consen 344 GSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGC--VRLWKIEDGLRAINLLYS 421 (479)
T ss_pred ccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCc--eEEEEecCCccccceeee
Confidence 34578888888765431 11122221 0 125678888886678998988885 4455555452 112221
Q ss_pred cC-CeeEEEeecccCCcEEEEEEc
Q 003878 448 IE-IGSVNAISARREDSVVFISFT 470 (789)
Q Consensus 448 ~~-~~~v~~~s~s~d~~~l~~~~s 470 (789)
++ .|-|.++.++.+++.++....
T Consensus 422 ls~~GfVNsl~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 422 LSLVGFVNSLAFSNSGKRIVAGIG 445 (479)
T ss_pred cccccEEEEEEEccCCCEEEEecc
Confidence 23 567788888899997776543
No 294
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=97.11 E-value=0.11 Score=55.30 Aligned_cols=61 Identities=26% Similarity=0.254 Sum_probs=38.9
Q ss_pred cCCCCeeEEEEecCCC-CC--ceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcC
Q 003878 99 TGLQPQSVLYVQDSLD-AK--AKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIE 166 (789)
Q Consensus 99 ~~~~~~~~~~~~~~~~-~~--~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~ 166 (789)
-|++.+-.||...... ++ ..|.+ ...|+ .++.++..+.+||+|..|| +|++..++.+|-..
T Consensus 32 ~G~D~~iriW~v~r~~~~~~~~~V~y-~s~Ls-~H~~aVN~vRf~p~gelLA-----Sg~D~g~v~lWk~~ 95 (434)
T KOG1009|consen 32 AGGDKDIRIWKVNRSEPGGGDMKVEY-LSSLS-RHTRAVNVVRFSPDGELLA-----SGGDGGEVFLWKQG 95 (434)
T ss_pred ccCccceeeeeeeecCCCCCceeEEE-eeccc-CCcceeEEEEEcCCcCeee-----ecCCCceEEEEEec
Confidence 3455556677754322 21 23332 22343 2456789999999999999 67777888888765
No 295
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=97.09 E-value=0.059 Score=55.41 Aligned_cols=51 Identities=18% Similarity=0.070 Sum_probs=37.1
Q ss_pred ceEEeccCCCCCC-----CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceec
Q 003878 117 AKVLLDPNTLSDD-----GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA 172 (789)
Q Consensus 117 ~~~l~d~~~~~~~-----~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~ 172 (789)
..|+.|..++... +...+.+++||+||++|.-+. ....|.+||+..|..+.
T Consensus 46 ~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS-----~D~si~lwDl~~gs~l~ 101 (405)
T KOG1273|consen 46 RVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSS-----RDWSIKLWDLLKGSPLK 101 (405)
T ss_pred cEEEEEccccchhhhhhccccceeEEEecCCCCEeeeec-----CCceeEEEeccCCCcee
Confidence 3566777666433 345688999999999998433 34579999999997543
No 296
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.05 E-value=0.045 Score=59.32 Aligned_cols=192 Identities=14% Similarity=0.009 Sum_probs=116.9
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
++..+....++|+++.++. .|+|...+++||+.++.+ +..+... .|
T Consensus 109 h~apv~~~~f~~~d~t~l~----s~sDd~v~k~~d~s~a~v-~~~l~~h---------------------tD-------- 154 (487)
T KOG0310|consen 109 HQAPVHVTKFSPQDNTMLV----SGSDDKVVKYWDLSTAYV-QAELSGH---------------------TD-------- 154 (487)
T ss_pred ccCceeEEEecccCCeEEE----ecCCCceEEEEEcCCcEE-EEEecCC---------------------cc--------
Confidence 5566788889999988874 466778999999999875 3233332 01
Q ss_pred cceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCc
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED 289 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~ 289 (789)
-....+|+|-...|+++ ..+...|.+|+..+... .
T Consensus 155 --------------------------YVR~g~~~~~~~hivvt------------------GsYDg~vrl~DtR~~~~-~ 189 (487)
T KOG0310|consen 155 --------------------------YVRCGDISPANDHIVVT------------------GSYDGKVRLWDTRSLTS-R 189 (487)
T ss_pred --------------------------eeEeeccccCCCeEEEe------------------cCCCceEEEEEeccCCc-e
Confidence 13677899998999987 55677899999887642 2
Q ss_pred EEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee--EEEe
Q 003878 290 ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY--EVIA 367 (789)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~s 367 (789)
+ .+. ++..-+.++-+-|.|..++-.. -+.+.+||+.+|... +... ....... -.+.
T Consensus 190 v--~el-nhg~pVe~vl~lpsgs~iasAg------Gn~vkVWDl~~G~ql------------l~~~-~~H~KtVTcL~l~ 247 (487)
T KOG0310|consen 190 V--VEL-NHGCPVESVLALPSGSLIASAG------GNSVKVWDLTTGGQL------------LTSM-FNHNKTVTCLRLA 247 (487)
T ss_pred e--EEe-cCCCceeeEEEcCCCCEEEEcC------CCeEEEEEecCCcee------------hhhh-hcccceEEEEEee
Confidence 2 222 2222345677788888876443 256889999875311 1000 1011111 1133
Q ss_pred cCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCe
Q 003878 368 NDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVK 429 (789)
Q Consensus 368 ~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~ 429 (789)
.++.+|+- .+=+.++-.+|+.+ ++.+..-.-...+-++++++++..++.+..||.
T Consensus 248 s~~~rLlS----~sLD~~VKVfd~t~---~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 248 SDSTRLLS----GSLDRHVKVFDTTN---YKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGL 302 (487)
T ss_pred cCCceEee----cccccceEEEEccc---eEEEEeeecccceeeEEecCCCceEEEecccce
Confidence 46666662 12234555556433 444433333355778888887787778888874
No 297
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.024 Score=60.41 Aligned_cols=68 Identities=15% Similarity=0.113 Sum_probs=44.0
Q ss_pred EEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEEC
Q 003878 365 VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDL 437 (789)
Q Consensus 365 ~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl 437 (789)
.+|.||+.+++-|+. +.|..++..+-+ ...++++.....+.++.++|+.+.....+.+....|..+..
T Consensus 288 ~VS~dGkf~AlGT~d----GsVai~~~~~lq-~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 288 AVSDDGKFLALGTMD----GSVAIYDAKSLQ-RLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEcCCCcEEEEeccC----CcEEEEEeceee-eeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 478999999887774 456667766554 34456666556788999998655555555444444444444
No 298
>COG3150 Predicted esterase [General function prediction only]
Probab=97.02 E-value=0.0099 Score=55.74 Aligned_cols=139 Identities=12% Similarity=-0.012 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEec---CCcccccccccccCCccch--hhcCC
Q 003878 599 FDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAH---VGVMDMLRYHKFTIGHAWV--SDFGC 673 (789)
Q Consensus 599 ~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~---~p~~d~~~~~~~~~~~~~~--~e~g~ 673 (789)
..+.++-++.++++. .|+ .++|.|.|.||+.+-+++.++ -+++++.. .|.-+|..+.. ..+.|+ .+|-.
T Consensus 42 p~~a~~ele~~i~~~-~~~-~p~ivGssLGGY~At~l~~~~--Girav~~NPav~P~e~l~gylg--~~en~ytg~~y~l 115 (191)
T COG3150 42 PQQALKELEKAVQEL-GDE-SPLIVGSSLGGYYATWLGFLC--GIRAVVFNPAVRPYELLTGYLG--RPENPYTGQEYVL 115 (191)
T ss_pred HHHHHHHHHHHHHHc-CCC-CceEEeecchHHHHHHHHHHh--CChhhhcCCCcCchhhhhhhcC--CCCCCCCcceEEe
Confidence 456666777777663 233 399999999999999999885 35555432 23223322221 001010 11100
Q ss_pred CCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCC-CCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEE
Q 003878 674 SEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADH-DDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGR 752 (789)
Q Consensus 674 p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~-D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~ 752 (789)
.+.....+.. .+++.. ..|..|++-... |....+.++..++... ...
T Consensus 116 --e~~hI~~l~~----~~~~~l---------~~p~~~~lL~qtgDEvLDyr~a~a~y~~~-----------------~~~ 163 (191)
T COG3150 116 --ESRHIATLCV----LQFREL---------NRPRCLVLLSQTGDEVLDYRQAVAYYHPC-----------------YEI 163 (191)
T ss_pred --ehhhHHHHHH----hhcccc---------CCCcEEEeecccccHHHHHHHHHHHhhhh-----------------hhe
Confidence 1112222222 223332 356677766666 8776655554443332 356
Q ss_pred EeCCCCcCCCCchhhHHHHHHHHHHHH
Q 003878 753 IERKAGHGVGLPTQKMIDEAADRYGFM 779 (789)
Q Consensus 753 ~~~~~gH~~~~~~~~~~~~~~~~~~fl 779 (789)
+..++.|+|.. ....+..+.+|+
T Consensus 164 V~dgg~H~F~~----f~~~l~~i~aF~ 186 (191)
T COG3150 164 VWDGGDHKFKG----FSRHLQRIKAFK 186 (191)
T ss_pred eecCCCccccc----hHHhHHHHHHHh
Confidence 66789999864 234566777776
No 299
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=97.02 E-value=0.021 Score=61.83 Aligned_cols=179 Identities=10% Similarity=0.019 Sum_probs=106.5
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
.+-..+|||++|++. ++...+-+|+|.++...- -.+.+-....-..++.|||.+-.+..
T Consensus 469 RSckL~pdgrtLivG-------------------GeastlsiWDLAapTpri--kaeltssapaCyALa~spDakvcFsc 527 (705)
T KOG0639|consen 469 RSCKLLPDGRTLIVG-------------------GEASTLSIWDLAAPTPRI--KAELTSSAPACYALAISPDAKVCFSC 527 (705)
T ss_pred eeeEecCCCceEEec-------------------cccceeeeeeccCCCcch--hhhcCCcchhhhhhhcCCccceeeee
Confidence 567789999999875 234568889997654221 01111100112357899999987766
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccc-eeEEEecCCCEEEEEECCCCCCceEEEEECCCCCC
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND 396 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~ 396 (789)
..++ .|.++|+.+. ..++.+....+. .--.+++||..|+ .++.+..|.-||+..+.
T Consensus 528 csdG-----nI~vwDLhnq-------------~~VrqfqGhtDGascIdis~dGtklW----TGGlDntvRcWDlregr- 584 (705)
T KOG0639|consen 528 CSDG-----NIAVWDLHNQ-------------TLVRQFQGHTDGASCIDISKDGTKLW----TGGLDNTVRCWDLREGR- 584 (705)
T ss_pred ccCC-----cEEEEEcccc-------------eeeecccCCCCCceeEEecCCCceee----cCCCccceeehhhhhhh-
Confidence 6543 3788898762 112222222221 2234788998877 35566778889987753
Q ss_pred eEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEE
Q 003878 397 WFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVV 465 (789)
Q Consensus 397 ~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l 465 (789)
.+..+.....|.++...+.+..++...+++ ++.+.... +....+|.+....|-++.+.+-|+.+
T Consensus 585 --qlqqhdF~SQIfSLg~cP~~dWlavGMens--~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwf 648 (705)
T KOG0639|consen 585 --QLQQHDFSSQIFSLGYCPTGDWLAVGMENS--NVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWF 648 (705)
T ss_pred --hhhhhhhhhhheecccCCCccceeeecccC--cEEEEecC-CccceeecccccEEEEEEecccCcee
Confidence 333444334455555555444444566665 56666654 55557788777777777788777743
No 300
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=97.00 E-value=0.11 Score=58.93 Aligned_cols=76 Identities=11% Similarity=0.117 Sum_probs=53.2
Q ss_pred ceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC---CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEEC
Q 003878 407 DVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE---IGSVNAISARREDSVVFISFTSFLIPGIVYQCNL 483 (789)
Q Consensus 407 ~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~---~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl 483 (789)
..+.++++.+..+++++.-.|- .|.++++++|+.++..... .|..--+..+|.+..++-+++. .++-.+|.
T Consensus 597 tTlYDm~Vdp~~k~v~t~cQDr--nirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsd----ktl~~~Df 670 (1080)
T KOG1408|consen 597 TTLYDMAVDPTSKLVVTVCQDR--NIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSD----KTLCFVDF 670 (1080)
T ss_pred ceEEEeeeCCCcceEEEEeccc--ceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecC----CceEEEEe
Confidence 4577888877545555555553 6899999999986665542 4665567788888877776654 36777888
Q ss_pred CCCCc
Q 003878 484 KTETP 488 (789)
Q Consensus 484 ~tg~~ 488 (789)
-+|++
T Consensus 671 ~sgEc 675 (1080)
T KOG1408|consen 671 VSGEC 675 (1080)
T ss_pred ccchh
Confidence 77764
No 301
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=96.98 E-value=0.42 Score=46.90 Aligned_cols=133 Identities=12% Similarity=0.136 Sum_probs=71.0
Q ss_pred cCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEE
Q 003878 309 EDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIR 388 (789)
Q Consensus 309 pDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~ 388 (789)
..|..|+++... ..-.||+-|-..| +++..+..........++=+|-.|+ + +..+..|..
T Consensus 149 ~s~~~il~s~ga---gdc~iy~tdc~~g-------------~~~~a~sghtghilalyswn~~m~~--s--gsqdktirf 208 (350)
T KOG0641|consen 149 ESGGAILASAGA---GDCKIYITDCGRG-------------QGFHALSGHTGHILALYSWNGAMFA--S--GSQDKTIRF 208 (350)
T ss_pred CcCceEEEecCC---CcceEEEeecCCC-------------CcceeecCCcccEEEEEEecCcEEE--c--cCCCceEEE
Confidence 345555555432 2577999887764 3344444333222222222333332 1 223345666
Q ss_pred EECCCCCCeEEeccC--C---CCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCc
Q 003878 389 VDLKEPNDWFEVIPE--A---ERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDS 463 (789)
Q Consensus 389 ~dl~~~~~~~~l~~~--~---~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~ 463 (789)
||+.-+.....+-.. . +...+.++.+.+.++|+++...+. .-.++|+..|..++........+..+.++|..-
T Consensus 209 wdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ds--sc~lydirg~r~iq~f~phsadir~vrfsp~a~ 286 (350)
T KOG0641|consen 209 WDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADS--SCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAH 286 (350)
T ss_pred EeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCC--ceEEEEeeCCceeeeeCCCccceeEEEeCCCce
Confidence 676543311221111 1 113456777777789998888776 445568876666555554466777777777554
No 302
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=96.95 E-value=0.016 Score=62.51 Aligned_cols=246 Identities=11% Similarity=0.023 Sum_probs=132.8
Q ss_pred CCcEEEEeEEeCC-CCcEEEEEEecCCceEEEEEEEEcCC-CceecccccccccccccCccceeeeeecccccccccccc
Q 003878 129 DGTAALIKVSVSE-DAKYLAYALSYSGSDWATIKLMRIED-QIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFL 206 (789)
Q Consensus 129 ~~~~~~~~~~~Sp-Dg~~la~~~~~~g~~~~~i~v~dl~t-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 206 (789)
+++-.+..+.|.| .|..|+ +++-...|+||++-+ +..+. +..+. +.
T Consensus 212 gH~kgvsai~~fp~~~hLlL-----S~gmD~~vklW~vy~~~~~lr-tf~gH------~k-------------------- 259 (503)
T KOG0282|consen 212 GHTKGVSAIQWFPKKGHLLL-----SGGMDGLVKLWNVYDDRRCLR-TFKGH------RK-------------------- 259 (503)
T ss_pred CCccccchhhhccceeeEEE-----ecCCCceEEEEEEecCcceeh-hhhcc------hh--------------------
Confidence 3455678888999 666555 444566899999877 44432 22111 00
Q ss_pred ccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCC
Q 003878 207 YLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQ 286 (789)
Q Consensus 207 ~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~ 286 (789)
.+..+.|+++|+.|+-..++ ..|.+|+..|++
T Consensus 260 -----------------------------~Vrd~~~s~~g~~fLS~sfD-------------------~~lKlwDtETG~ 291 (503)
T KOG0282|consen 260 -----------------------------PVRDASFNNCGTSFLSASFD-------------------RFLKLWDTETGQ 291 (503)
T ss_pred -----------------------------hhhhhhccccCCeeeeeecc-------------------eeeeeeccccce
Confidence 25789999999999866554 357788888775
Q ss_pred CCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccce-eEE
Q 003878 287 SEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ-YEV 365 (789)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 365 (789)
.. .-+.... . ..-+.+-||+..+++.... ...|..+|+.+++- +.......... -..
T Consensus 292 ~~--~~f~~~~-~--~~cvkf~pd~~n~fl~G~s----d~ki~~wDiRs~kv-------------vqeYd~hLg~i~~i~ 349 (503)
T KOG0282|consen 292 VL--SRFHLDK-V--PTCVKFHPDNQNIFLVGGS----DKKIRQWDIRSGKV-------------VQEYDRHLGAILDIT 349 (503)
T ss_pred EE--EEEecCC-C--ceeeecCCCCCcEEEEecC----CCcEEEEeccchHH-------------HHHHHhhhhheeeeE
Confidence 32 2233322 2 2346788999777766432 46788999987530 11100011111 122
Q ss_pred EecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCC---ce
Q 003878 366 IANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNG---SL 442 (789)
Q Consensus 366 ~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG---~~ 442 (789)
|-++|++++-.++. ...+|+-+.. +-..+.+. .........+...+++..++..+-+. .|+++....- ..
T Consensus 350 F~~~g~rFissSDd--ks~riWe~~~--~v~ik~i~-~~~~hsmP~~~~~P~~~~~~aQs~dN--~i~ifs~~~~~r~nk 422 (503)
T KOG0282|consen 350 FVDEGRRFISSSDD--KSVRIWENRI--PVPIKNIA-DPEMHTMPCLTLHPNGKWFAAQSMDN--YIAIFSTVPPFRLNK 422 (503)
T ss_pred EccCCceEeeeccC--ccEEEEEcCC--Cccchhhc-chhhccCcceecCCCCCeehhhccCc--eEEEEecccccccCH
Confidence 55778887655443 2445544433 32112222 11123445566665433333333332 4555443210 01
Q ss_pred eeecccC--CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 443 LHQLPIE--IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 443 ~~~l~~~--~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
.+..... .|....+.+|||+..|. |-..-+.++.||..|-+
T Consensus 423 kK~feGh~vaGys~~v~fSpDG~~l~----SGdsdG~v~~wdwkt~k 465 (503)
T KOG0282|consen 423 KKRFEGHSVAGYSCQVDFSPDGRTLC----SGDSDGKVNFWDWKTTK 465 (503)
T ss_pred hhhhcceeccCceeeEEEcCCCCeEE----eecCCccEEEeechhhh
Confidence 1122222 33333678999999665 33556889999987654
No 303
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.95 E-value=0.39 Score=47.72 Aligned_cols=239 Identities=14% Similarity=0.083 Sum_probs=132.3
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
-++..+.+.-||+|..- -|+ ..++++|+...|..+. +..+. |
T Consensus 18 gaV~avryN~dGnY~lt----cGs-drtvrLWNp~rg~lik-tYsgh-----------------------G--------- 59 (307)
T KOG0316|consen 18 GAVRAVRYNVDGNYCLT----CGS-DRTVRLWNPLRGALIK-TYSGH-----------------------G--------- 59 (307)
T ss_pred cceEEEEEccCCCEEEE----cCC-CceEEeecccccceee-eecCC-----------------------C---------
Confidence 45778899999999862 455 4599999999886553 22221 0
Q ss_pred eeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEE
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL 291 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~ 291 (789)
...-..+-+-|+..|+- .+....+++|++.|+....
T Consensus 60 -----------------------~EVlD~~~s~Dnskf~s-------------------~GgDk~v~vwDV~TGkv~R-- 95 (307)
T KOG0316|consen 60 -----------------------HEVLDAALSSDNSKFAS-------------------CGGDKAVQVWDVNTGKVDR-- 95 (307)
T ss_pred -----------------------ceeeecccccccccccc-------------------CCCCceEEEEEcccCeeee--
Confidence 02344555667777763 2345578999998875322
Q ss_pred EEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCC
Q 003878 292 CWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDT 371 (789)
Q Consensus 292 ~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~ 371 (789)
-|.. +...+..+.+..+..-++-.+ ..+.+.++|-.... ..|.+ +..+.......+.-.+.
T Consensus 96 r~rg--H~aqVNtV~fNeesSVv~Sgs-----fD~s~r~wDCRS~s-----------~ePiQ-ildea~D~V~Si~v~~h 156 (307)
T KOG0316|consen 96 RFRG--HLAQVNTVRFNEESSVVASGS-----FDSSVRLWDCRSRS-----------FEPIQ-ILDEAKDGVSSIDVAEH 156 (307)
T ss_pred eccc--ccceeeEEEecCcceEEEecc-----ccceeEEEEcccCC-----------CCccc-hhhhhcCceeEEEeccc
Confidence 2332 233455677766655444322 24557788876531 12232 22222212222222333
Q ss_pred EEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC--
Q 003878 372 VFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-- 449 (789)
Q Consensus 372 ~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~-- 449 (789)
.|+ .. ..++.+-++|+..+. +...--...+..+.+++++...+...-++ .|+++|.++|+.+..-...
T Consensus 157 eIv-aG---S~DGtvRtydiR~G~----l~sDy~g~pit~vs~s~d~nc~La~~l~s--tlrLlDk~tGklL~sYkGhkn 226 (307)
T KOG0316|consen 157 EIV-AG---SVDGTVRTYDIRKGT----LSSDYFGHPITSVSFSKDGNCSLASSLDS--TLRLLDKETGKLLKSYKGHKN 226 (307)
T ss_pred EEE-ee---ccCCcEEEEEeecce----eehhhcCCcceeEEecCCCCEEEEeeccc--eeeecccchhHHHHHhccccc
Confidence 333 22 234667777776654 22222245678889998766655555554 7889999999864433322
Q ss_pred -CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 450 -IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 450 -~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
.+.+. -.++ .+....+ |-.+-+.+|.||+...
T Consensus 227 ~eykld-c~l~-qsdthV~---sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 227 MEYKLD-CCLN-QSDTHVF---SGSEDGKVYFWDLVDE 259 (307)
T ss_pred ceeeee-eeec-ccceeEE---eccCCceEEEEEeccc
Confidence 11111 1111 2233333 3356778999998766
No 304
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.95 E-value=0.052 Score=57.62 Aligned_cols=129 Identities=19% Similarity=0.249 Sum_probs=70.2
Q ss_pred EEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec-----cccc---eeEEEecCCCEE
Q 003878 302 IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-----GFDA---QYEVIANDDTVF 373 (789)
Q Consensus 302 ~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-----~~~~---~~~~~s~dG~~l 373 (789)
+....++.++.+++|.+.+ ..||-+++.+..... ..+|..+.. ++.. ....+.+..++|
T Consensus 186 f~~~~~~~~~~~~~F~Sy~-----G~v~~~dlsg~~~~~--------~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rl 252 (342)
T PF06433_consen 186 FEHPAYSRDGGRLYFVSYE-----GNVYSADLSGDSAKF--------GKPWSLLTDAEKADGWRPGGWQLIAYHAASGRL 252 (342)
T ss_dssp -S--EEETTTTEEEEEBTT-----SEEEEEEETTSSEEE--------EEEEESS-HHHHHTTEEE-SSS-EEEETTTTEE
T ss_pred ccccceECCCCeEEEEecC-----CEEEEEeccCCcccc--------cCcccccCccccccCcCCcceeeeeeccccCeE
Confidence 3356677777777776643 458999987632110 011211111 1110 112355667788
Q ss_pred EEEECCC------CCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCE-EEEEEEeCCeEEEEEEECCCCceeeec
Q 003878 374 TFLTNKD------APKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQ-MIVSYLSDVKYVLQIRDLKNGSLLHQL 446 (789)
Q Consensus 374 ~~~tn~~------~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~-lv~~~~~~g~~~L~~~dl~tG~~~~~l 446 (789)
|++.+.+ .+...|+.+|+++++...++ +-. ..+.++.++.++. +++.... +...|+++|..+|+.++.+
T Consensus 253 yvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri-~l~--~~~~Si~Vsqd~~P~L~~~~~-~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 253 YVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARI-PLE--HPIDSIAVSQDDKPLLYALSA-GDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp EEEEEE--TT-TTS-EEEEEEEETTTTEEEEEE-EEE--EEESEEEEESSSS-EEEEEET-TTTEEEEEETTT--EEEEE
T ss_pred EEEecCCCCCCccCCceEEEEEECCCCeEEEEE-eCC--CccceEEEccCCCcEEEEEcC-CCCeEEEEeCcCCcEEeeh
Confidence 8887642 24568999999998733333 211 3456788887544 4443333 2347999999999886666
Q ss_pred c
Q 003878 447 P 447 (789)
Q Consensus 447 ~ 447 (789)
.
T Consensus 329 ~ 329 (342)
T PF06433_consen 329 E 329 (342)
T ss_dssp -
T ss_pred h
Confidence 4
No 305
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=96.93 E-value=0.0065 Score=68.18 Aligned_cols=110 Identities=14% Similarity=0.157 Sum_probs=72.9
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
+.+.+..+.+||+|+.||-+....-.+...|++|+.++=.... .|...
T Consensus 524 HGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~-~L~~H------------------------------- 571 (764)
T KOG1063|consen 524 HGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQ-ELEGH------------------------------- 571 (764)
T ss_pred CceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhh-eeccc-------------------------------
Confidence 4578999999999999998887777889999999976643332 22222
Q ss_pred cceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCc
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED 289 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~ 289 (789)
++....++|||||+.|+-...+ +.+-+|....... +
T Consensus 572 ------------------------sLTVT~l~FSpdg~~LLsvsRD-------------------Rt~sl~~~~~~~~-~ 607 (764)
T KOG1063|consen 572 ------------------------SLTVTRLAFSPDGRYLLSVSRD-------------------RTVSLYEVQEDIK-D 607 (764)
T ss_pred ------------------------ceEEEEEEECCCCcEEEEeecC-------------------ceEEeeeeecccc-h
Confidence 2246899999999999866443 3344444432211 1
Q ss_pred EEEEe-cCCCCeeEEEEEEecCCcEEE
Q 003878 290 ILCWK-DPEHPKYIFSGHVTEDGQYLV 315 (789)
Q Consensus 290 ~~~~~-~~~~~~~~~~~~~SpDG~~l~ 315 (789)
..-|. ...|..-+.+..|+||+++++
T Consensus 608 e~~fa~~k~HtRIIWdcsW~pde~~Fa 634 (764)
T KOG1063|consen 608 EFRFACLKAHTRIIWDCSWSPDEKYFA 634 (764)
T ss_pred hhhhccccccceEEEEcccCcccceeE
Confidence 11111 233445566889999999944
No 306
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=96.93 E-value=0.01 Score=66.00 Aligned_cols=170 Identities=17% Similarity=0.129 Sum_probs=101.3
Q ss_pred CccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeE--EEEEeecC-CCCCChhHHhcccccCCcchHHHHHHHHHHHH--H
Q 003878 537 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAV--FCIANIRG-GGEYGEEWHKGGALAKKQNCFDDFISASEYLI--S 611 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~--v~~~~~RG-~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~--~ 611 (789)
-.|+++..||.+-....-.|.-.|.+.|.-.|-+ +..+|++- .|+ .+-....+-.+.+.++.+ -
T Consensus 175 ~spl~i~aps~p~ap~tSd~~~~wqs~lsl~gevvev~tfdl~n~igG-----------~nI~h~ae~~vSf~r~kvlei 243 (784)
T KOG3253|consen 175 ASPLAIKAPSTPLAPKTSDRMWSWQSRLSLKGEVVEVPTFDLNNPIGG-----------ANIKHAAEYSVSFDRYKVLEI 243 (784)
T ss_pred CCceEEeccCCCCCCccchHHHhHHHHHhhhceeeeeccccccCCCCC-----------cchHHHHHHHHHHhhhhhhhh
Confidence 4689999999883333333444455666545533 33444442 111 011112233344444322 2
Q ss_pred cCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccC
Q 003878 612 AGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHN 691 (789)
Q Consensus 612 ~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~ 691 (789)
.+..-...|.++|+|+|..+++++....-|.+-.++...++-+- . ..+. -|..++. |.
T Consensus 244 ~gefpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~--~---vdgp-----rgirDE~-----Ll------- 301 (784)
T KOG3253|consen 244 TGEFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLD--T---VDGP-----RGIRDEA-----LL------- 301 (784)
T ss_pred hccCCCCceEEEecccCceeeEEeccccCCceEEEEEEeccccc--C---CCcc-----cCCcchh-----hH-------
Confidence 24445578999999999999888887776666544444332210 0 0010 0222211 11
Q ss_pred CCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCc
Q 003878 692 VRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLP 764 (789)
Q Consensus 692 v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~ 764 (789)
.. ..|+||+.|.+|.+|++..-+++.+++++. +++++..+++|.+.-+
T Consensus 302 --dm----------k~PVLFV~Gsnd~mcspn~ME~vreKMqA~-------------~elhVI~~adhsmaip 349 (784)
T KOG3253|consen 302 --DM----------KQPVLFVIGSNDHMCSPNSMEEVREKMQAE-------------VELHVIGGADHSMAIP 349 (784)
T ss_pred --hc----------CCceEEEecCCcccCCHHHHHHHHHHhhcc-------------ceEEEecCCCccccCC
Confidence 11 569999999999999999999999999864 5789999999987543
No 307
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=96.89 E-value=0.26 Score=56.35 Aligned_cols=126 Identities=14% Similarity=0.116 Sum_probs=82.0
Q ss_pred EEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCC
Q 003878 302 IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDA 381 (789)
Q Consensus 302 ~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~ 381 (789)
+..++.|||++++++.....++.+-.+.+.|++++. . ....+.+. .....|.+|++.|++++..+.
T Consensus 131 Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~-----------~--~~d~i~~~-~~~~~Wa~d~~~lfYt~~d~~ 196 (682)
T COG1770 131 LGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGE-----------E--LPDEITNT-SGSFAWAADGKTLFYTRLDEN 196 (682)
T ss_pred eeeeeeCCCCceEEEEEecccccEEEEEEEeccccc-----------c--cchhhccc-ccceEEecCCCeEEEEEEcCC
Confidence 456789999999999887766667778888998863 0 11111111 123459999999999887653
Q ss_pred -CCceEEEEECCCCCCe-EEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECCCCc
Q 003878 382 -PKYKIIRVDLKEPNDW-FEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGS 441 (789)
Q Consensus 382 -~~~~L~~~dl~~~~~~-~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~ 441 (789)
--.+|++..+.++..- +.|..+.+....-++.-+.+ +.+++.......+++++++.+..+
T Consensus 197 ~rp~kv~~h~~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~ 259 (682)
T COG1770 197 HRPDKVWRHRLGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPE 259 (682)
T ss_pred CCcceEEEEecCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCC
Confidence 3468888888874322 33445554444444444432 556666656667899999987543
No 308
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=96.85 E-value=0.046 Score=58.75 Aligned_cols=161 Identities=13% Similarity=0.048 Sum_probs=99.7
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
+..++|.|-...+|-+.. ....+.+|++.+...+...... .+..-+..++|+|=+.+|+.
T Consensus 230 VeDV~~h~~h~~lF~sv~------------------dd~~L~iwD~R~~~~~~~~~~~--ah~~~vn~~~fnp~~~~ilA 289 (422)
T KOG0264|consen 230 VEDVAWHPLHEDLFGSVG------------------DDGKLMIWDTRSNTSKPSHSVK--AHSAEVNCVAFNPFNEFILA 289 (422)
T ss_pred eehhhccccchhhheeec------------------CCCeEEEEEcCCCCCCCccccc--ccCCceeEEEeCCCCCceEE
Confidence 467899998877775533 3356889998863222222222 23334567899999999887
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeE-EEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYE-VIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
+.+. ...|.++|+.... .++-.+....+..+. .|||+.+.++-.+. .+.+|.++|+..-.
T Consensus 290 T~S~----D~tV~LwDlRnL~------------~~lh~~e~H~dev~~V~WSPh~etvLASSg---~D~rl~vWDls~ig 350 (422)
T KOG0264|consen 290 TGSA----DKTVALWDLRNLN------------KPLHTFEGHEDEVFQVEWSPHNETVLASSG---TDRRLNVWDLSRIG 350 (422)
T ss_pred eccC----CCcEEEeechhcc------------cCceeccCCCcceEEEEeCCCCCceeEecc---cCCcEEEEeccccc
Confidence 6642 4669999998742 223333333333343 39998887765543 45789999986421
Q ss_pred -----------CeEEeccCCCC-ceeeeEEEecC-CEEEEEEEeCCeEEEEEEECC
Q 003878 396 -----------DWFEVIPEAER-DVLESATAVNL-NQMIVSYLSDVKYVLQIRDLK 438 (789)
Q Consensus 396 -----------~~~~l~~~~~~-~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~ 438 (789)
....++.|..+ ..+.+++|.+. -+++++..+++ .|.+|...
T Consensus 351 ~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN--~LqIW~~s 404 (422)
T KOG0264|consen 351 EEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDN--ILQIWQMA 404 (422)
T ss_pred cccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCc--eEEEeecc
Confidence 12334444432 45778889884 47888888886 45555543
No 309
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=96.84 E-value=0.15 Score=56.54 Aligned_cols=196 Identities=12% Similarity=0.093 Sum_probs=109.7
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCc----EEEEecCCCCeeEEEEEEecCCc
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED----ILCWKDPEHPKYIFSGHVTEDGQ 312 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~----~~~~~~~~~~~~~~~~~~SpDG~ 312 (789)
+..++.||-+.--++..+.... .+-+..+.++......... ...|.. + -....|.+-|.
T Consensus 168 i~~f~lSpgp~~~~vAvyvPe~------------kGaPa~vri~~~~~~~~~~~~a~ksFFka-d----kvqm~WN~~gt 230 (566)
T KOG2315|consen 168 ITMLSLSPGPEPPFVAVYVPEK------------KGAPASVRIYKYPEEGQHQPVANKSFFKA-D----KVQMKWNKLGT 230 (566)
T ss_pred eeeEEecCCCCCceEEEEccCC------------CCCCcEEEEeccccccccchhhhcccccc-c----eeEEEeccCCc
Confidence 4778888875443333332211 3456667777765222111 111211 1 13567999998
Q ss_pred EEEEEEEcCCC-------CceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCce
Q 003878 313 YLVMCIEENCD-------PVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYK 385 (789)
Q Consensus 313 ~l~~~~~~~~~-------~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~ 385 (789)
-|++.+...-+ ..+.+|+++..+ . ....++..........|+++|+.|.++..-- + .+
T Consensus 231 ~LLvLastdVDktn~SYYGEq~Lyll~t~g-~------------s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfM-P-Ak 295 (566)
T KOG2315|consen 231 ALLVLASTDVDKTNASYYGEQTLYLLATQG-E------------SVSVPLLKEGPVHDVTWSPSGREFAVVYGFM-P-AK 295 (566)
T ss_pred eEEEEEEEeecCCCccccccceEEEEEecC-c------------eEEEecCCCCCceEEEECCCCCEEEEEEecc-c-ce
Confidence 87765543321 246799998874 1 2234444322222244999999998876432 2 45
Q ss_pred EEEEECCCCCCeEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcE
Q 003878 386 IIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSV 464 (789)
Q Consensus 386 L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~ 464 (789)
+-..|++.. ..--+++.+. ..+.+++. +.+++.+-.|-...+-+||..+-+.+..+..... +.+.|+|||..
T Consensus 296 vtifnlr~~--~v~df~egpR---N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~ 368 (566)
T KOG2315|consen 296 VTIFNLRGK--PVFDFPEGPR---NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEY 368 (566)
T ss_pred EEEEcCCCC--EeEeCCCCCc---cceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcE
Confidence 666777653 2223444432 24455654 4566666666677999999975333222222222 24679999998
Q ss_pred EEEEEcC
Q 003878 465 VFISFTS 471 (789)
Q Consensus 465 l~~~~ss 471 (789)
++...++
T Consensus 369 flTATTa 375 (566)
T KOG2315|consen 369 FLTATTA 375 (566)
T ss_pred EEEEecc
Confidence 7766555
No 310
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.77 E-value=0.17 Score=57.95 Aligned_cols=211 Identities=12% Similarity=0.112 Sum_probs=101.7
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
....++|||+++|.+.++.. ....+...+.++ .....++.-.. .....+||++..+.
T Consensus 238 d~v~~spdGk~afvTsyNsE---------------~G~tl~em~a~e--~d~~vvfni~~------iea~vkdGK~~~V~ 294 (635)
T PRK02888 238 DNVDTDYDGKYAFSTCYNSE---------------EGVTLAEMMAAE--RDWVVVFNIAR------IEEAVKAGKFKTIG 294 (635)
T ss_pred ccceECCCCCEEEEeccCcc---------------cCcceeeecccc--CceEEEEchHH------HHHhhhCCCEEEEC
Confidence 56788999999999876431 111222222221 11222332211 12457899988762
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeee-ccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCC
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI-DGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND 396 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~ 396 (789)
.+.|-++|..+...+ .......+ .+-...-..+||||+++|+ +|... ..+-++|+++.+.
T Consensus 295 -------gn~V~VID~~t~~~~---------~~~v~~yIPVGKsPHGV~vSPDGkylyV-anklS--~tVSVIDv~k~k~ 355 (635)
T PRK02888 295 -------GSKVPVVDGRKAANA---------GSALTRYVPVPKNPHGVNTSPDGKYFIA-NGKLS--PTVTVIDVRKLDD 355 (635)
T ss_pred -------CCEEEEEECCccccC---------CcceEEEEECCCCccceEECCCCCEEEE-eCCCC--CcEEEEEChhhhh
Confidence 256888998761000 01112211 1111112348999999885 44433 4567777765321
Q ss_pred -------eE-EeccCCC--CceeeeEEEecCCEEEEEEEeCCeEEEEEEECCC------Cc----eeeecccC--CeeEE
Q 003878 397 -------WF-EVIPEAE--RDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKN------GS----LLHQLPIE--IGSVN 454 (789)
Q Consensus 397 -------~~-~l~~~~~--~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~t------G~----~~~~l~~~--~~~v~ 454 (789)
.+ .++.+-+ ...+ ..++.+++..|.+..-+ ++|..|++++ |+ .+.++... .+.+.
T Consensus 356 ~~~~~~~~~~~vvaevevGlGPL-HTaFDg~G~aytslf~d--sqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~ 432 (635)
T PRK02888 356 LFDGKIKPRDAVVAEPELGLGPL-HTAFDGRGNAYTTLFLD--SQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNH 432 (635)
T ss_pred hhhccCCccceEEEeeccCCCcc-eEEECCCCCEEEeEeec--ceeEEEehHHHHHHhccccCCcceecccCCCccceee
Confidence 11 1111110 0111 23455544566555444 4899999874 22 22233322 33332
Q ss_pred E---eecccCCcEEEE---------EEcCCCCCcEEEEEECCCCCceEEEeee
Q 003878 455 A---ISARREDSVVFI---------SFTSFLIPGIVYQCNLKTETPEMKIFRE 495 (789)
Q Consensus 455 ~---~s~s~d~~~l~~---------~~ss~~~P~~ly~~dl~tg~~~~~~l~~ 495 (789)
. -+..+|++.++. .--++..|..-.++|.... +++++..
T Consensus 433 ~~~g~t~~~dgk~l~~~nk~skdrfl~vgpl~pen~qlidIsgd--kM~lv~d 483 (635)
T PRK02888 433 ASMGETKEADGKWLVSLNKFSKDRFLPVGPLHPENDQLIDISGD--KMKLVHD 483 (635)
T ss_pred ecCCCcCCCCCCEEEEccccccccccCCCCCCCCcceeEEccCC--eeEEEec
Confidence 1 123566765542 1124445666666666544 3555543
No 311
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.76 E-value=0.00072 Score=63.09 Aligned_cols=125 Identities=15% Similarity=0.163 Sum_probs=80.1
Q ss_pred HHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHH
Q 003878 605 ASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLI 684 (789)
Q Consensus 605 ~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~ 684 (789)
--+|++++- =|.+..+.|.|+||+.++....++|++|..+|+.+++.|...+.. .--|.+.+
T Consensus 90 yerYv~eEa--lpgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdardffg------------~yyddDv~---- 151 (227)
T COG4947 90 YERYVIEEA--LPGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDARDFFG------------GYYDDDVY---- 151 (227)
T ss_pred HHHHHHHhh--cCCCccccccchhhhhhhhhheeChhHhhhheeecceeeHHHhcc------------ccccCcee----
Confidence 344666653 356789999999999999999999999999999999999764432 10000010
Q ss_pred hcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCc
Q 003878 685 KYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGH 759 (789)
Q Consensus 685 ~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH 759 (789)
-.||.+.+..+.+.-..+-...--+.+++|..|+..+ +..++.+.|.+. .+|..+.+..+-.|
T Consensus 152 ynsP~dylpg~~dp~~l~rlr~~~~vfc~G~e~~~L~--~~~~L~~~l~dK----------qipaw~~~WggvaH 214 (227)
T COG4947 152 YNSPSDYLPGLADPFRLERLRRIDMVFCIGDEDPFLD--NNQHLSRLLSDK----------QIPAWMHVWGGVAH 214 (227)
T ss_pred ecChhhhccCCcChHHHHHHhhccEEEEecCcccccc--chHHHHHHhccc----------cccHHHHHhccccc
Confidence 0234333332200000000012368899999998877 556888888876 77888877755444
No 312
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=96.75 E-value=0.66 Score=47.44 Aligned_cols=147 Identities=12% Similarity=0.079 Sum_probs=82.8
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCC-CcEEEEec-CCCCeeEEEEEEec--CCcE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQS-EDILCWKD-PEHPKYIFSGHVTE--DGQY 313 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~-~~~~~~~~-~~~~~~~~~~~~Sp--DG~~ 313 (789)
.-+.|-|+++.++-... +.|.++.+..... ...+...+ ......+.+..||| ||..
T Consensus 127 ~cvew~Pns~klasm~d--------------------n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnq 186 (370)
T KOG1007|consen 127 NCVEWEPNSDKLASMDD--------------------NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQ 186 (370)
T ss_pred eeEEEcCCCCeeEEecc--------------------CceEEEEcccCcchheeecccccccccceecccccCCCCccce
Confidence 56889999999986532 3477888875543 22222222 12233456889998 9999
Q ss_pred EEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc--ceeEEEecCCCEEEEEECCCCCCceEEEEEC
Q 003878 314 LVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD--AQYEVIANDDTVFTFLTNKDAPKYKIIRVDL 391 (789)
Q Consensus 314 l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl 391 (789)
++... .+.++.+|+.+-... ..+...-. .+...+.|+.+++++... ..+.|..+|.
T Consensus 187 v~tt~------d~tl~~~D~RT~~~~-------------~sI~dAHgq~vrdlDfNpnkq~~lvt~g---DdgyvriWD~ 244 (370)
T KOG1007|consen 187 VATTS------DSTLQFWDLRTMKKN-------------NSIEDAHGQRVRDLDFNPNKQHILVTCG---DDGYVRIWDT 244 (370)
T ss_pred EEEeC------CCcEEEEEccchhhh-------------cchhhhhcceeeeccCCCCceEEEEEcC---CCccEEEEec
Confidence 87654 244888898763210 01100000 011125677676665443 3466888887
Q ss_pred CCCC-CeEEeccCCCCceeeeEEEec-CCEEEEEEEeCC
Q 003878 392 KEPN-DWFEVIPEAERDVLESATAVN-LNQMIVSYLSDV 428 (789)
Q Consensus 392 ~~~~-~~~~l~~~~~~~~i~~v~~~~-~~~lv~~~~~~g 428 (789)
...+ ..+++-++. ..+-.+.+.+ .+.|+++...|.
T Consensus 245 R~tk~pv~el~~Hs--HWvW~VRfn~~hdqLiLs~~SDs 281 (370)
T KOG1007|consen 245 RKTKFPVQELPGHS--HWVWAVRFNPEHDQLILSGGSDS 281 (370)
T ss_pred cCCCccccccCCCc--eEEEEEEecCccceEEEecCCCc
Confidence 7654 234444444 3445555554 267887777664
No 313
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=96.75 E-value=0.66 Score=45.58 Aligned_cols=99 Identities=15% Similarity=0.129 Sum_probs=64.8
Q ss_pred CCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC-------Ce
Q 003878 379 KDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-------IG 451 (789)
Q Consensus 379 ~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~-------~~ 451 (789)
.++++.+||..|-..++.+..+-.+. ...+.-.+|. +.++++.+.+. .|+.||+.-...++.+... ..
T Consensus 158 ~gagdc~iy~tdc~~g~~~~a~sght-ghilalyswn--~~m~~sgsqdk--tirfwdlrv~~~v~~l~~~~~~~gless 232 (350)
T KOG0641|consen 158 AGAGDCKIYITDCGRGQGFHALSGHT-GHILALYSWN--GAMFASGSQDK--TIRFWDLRVNSCVNTLDNDFHDGGLESS 232 (350)
T ss_pred cCCCcceEEEeecCCCCcceeecCCc-ccEEEEEEec--CcEEEccCCCc--eEEEEeeeccceeeeccCcccCCCcccc
Confidence 45678999999988876555565555 3555556675 58888888775 6888998755444555321 23
Q ss_pred eEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 452 SVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 452 ~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
.|..+..+|.++.++ + --.-..-.+||...+
T Consensus 233 avaav~vdpsgrll~-s---g~~dssc~lydirg~ 263 (350)
T KOG0641|consen 233 AVAAVAVDPSGRLLA-S---GHADSSCMLYDIRGG 263 (350)
T ss_pred eeEEEEECCCcceee-e---ccCCCceEEEEeeCC
Confidence 466677888777443 2 223445677888777
No 314
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.74 E-value=0.15 Score=52.26 Aligned_cols=240 Identities=13% Similarity=0.120 Sum_probs=125.1
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCC-CceecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIED-QIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~t-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
+|+.+++||..+.++.+ |+=..++++|+++. |...+....... |
T Consensus 29 sIS~l~FSP~~~~~~~A----~SWD~tVR~wevq~~g~~~~ka~~~~~-------~------------------------ 73 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAA----GSWDGTVRIWEVQNSGQLVPKAQQSHD-------G------------------------ 73 (347)
T ss_pred chheeEeccccCceEEe----cccCCceEEEEEecCCcccchhhhccC-------C------------------------
Confidence 47889999955555544 33345899999986 454443322220 1
Q ss_pred eeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEE
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL 291 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~ 291 (789)
..-.++||.||..+|....+ .++.+|+|.+++...+
T Consensus 74 ------------------------PvL~v~WsddgskVf~g~~D-------------------k~~k~wDL~S~Q~~~v- 109 (347)
T KOG0647|consen 74 ------------------------PVLDVCWSDDGSKVFSGGCD-------------------KQAKLWDLASGQVSQV- 109 (347)
T ss_pred ------------------------CeEEEEEccCCceEEeeccC-------------------CceEEEEccCCCeeee-
Confidence 34678999999877755433 3578889988754332
Q ss_pred EEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCC
Q 003878 292 CWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDT 371 (789)
Q Consensus 292 ~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~ 371 (789)
.-.+.+ +..++|-+...+-.+.+. .. ...|..+|.... .+...+. -.+..|.. +- -.
T Consensus 110 --~~Hd~p--vkt~~wv~~~~~~cl~TG-SW--DKTlKfWD~R~~-------------~pv~t~~-LPeRvYa~-Dv-~~ 166 (347)
T KOG0647|consen 110 --AAHDAP--VKTCHWVPGMNYQCLVTG-SW--DKTLKFWDTRSS-------------NPVATLQ-LPERVYAA-DV-LY 166 (347)
T ss_pred --eecccc--eeEEEEecCCCcceeEec-cc--ccceeecccCCC-------------Ceeeeee-ccceeeeh-hc-cC
Confidence 222222 345677666654333321 12 345777887652 1111111 01112221 11 12
Q ss_pred EEEEEECCCCCCceEEEEECCCCC-CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecc---
Q 003878 372 VFTFLTNKDAPKYKIIRVDLKEPN-DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLP--- 447 (789)
Q Consensus 372 ~l~~~tn~~~~~~~L~~~dl~~~~-~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~--- 447 (789)
-++++... +-.|.+++|+++. ..+..-.+. ...+..++.+.++..++..+-.|.-.|..+|. +......+
T Consensus 167 pm~vVata---~r~i~vynL~n~~te~k~~~SpL-k~Q~R~va~f~d~~~~alGsiEGrv~iq~id~--~~~~~nFtFkC 240 (347)
T KOG0647|consen 167 PMAVVATA---ERHIAVYNLENPPTEFKRIESPL-KWQTRCVACFQDKDGFALGSIEGRVAIQYIDD--PNPKDNFTFKC 240 (347)
T ss_pred ceeEEEec---CCcEEEEEcCCCcchhhhhcCcc-cceeeEEEEEecCCceEeeeecceEEEEecCC--CCccCceeEEE
Confidence 23333322 2468888997653 233332222 34567888887655667777777555554443 32111111
Q ss_pred -------cC-CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECC
Q 003878 448 -------IE-IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 484 (789)
Q Consensus 448 -------~~-~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~ 484 (789)
.+ .+.|.++++.|-...+. +.. .-++.--||-.
T Consensus 241 HR~~~~~~~~VYaVNsi~FhP~hgtlv-TaG---sDGtf~FWDkd 281 (347)
T KOG0647|consen 241 HRSTNSVNDDVYAVNSIAFHPVHGTLV-TAG---SDGTFSFWDKD 281 (347)
T ss_pred eccCCCCCCceEEecceEeecccceEE-Eec---CCceEEEecch
Confidence 11 44566666766555443 222 23455555543
No 315
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=96.70 E-value=0.078 Score=61.09 Aligned_cols=202 Identities=15% Similarity=0.096 Sum_probs=108.6
Q ss_pred eEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceec---------ccccccccccccCccc
Q 003878 118 KVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA---------DALSWVCFCFSHSFGY 188 (789)
Q Consensus 118 ~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~---------~~~~~~~~~~~~~~~~ 188 (789)
+-+||++.+.+++ ..+.++.+|+-|+....+.+ ..+|-++++++|.... ..+.++
T Consensus 436 ~~~L~~~~~~~~~-~~~~av~vs~CGNF~~IG~S-----~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gl---------- 499 (910)
T KOG1539|consen 436 RHVLDPKRFKKDD-INATAVCVSFCGNFVFIGYS-----KGTIDRFNMQSGIHRKSFGDSPAHKGEVTGL---------- 499 (910)
T ss_pred cEEecCccccccC-cceEEEEEeccCceEEEecc-----CCeEEEEEcccCeeecccccCccccCceeEE----------
Confidence 3457777776644 23567899999998876554 3478999999993321 011111
Q ss_pred eeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCcc
Q 003878 189 FFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 268 (789)
Q Consensus 189 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~ 268 (789)
..=+--+++.+++.+|+-..|...-..--.++....--..+.|.+...- .
T Consensus 500 --------------------a~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l----------~ 549 (910)
T KOG1539|consen 500 --------------------AVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDL----------L 549 (910)
T ss_pred --------------------EecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhh----------h
Confidence 0001124567778888888886422000011111111234445443210 0
Q ss_pred ccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCC
Q 003878 269 TDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDG 348 (789)
Q Consensus 269 ~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~ 348 (789)
.-......|.+.+..|...- ..|. .+...+.+..+|||||||+..+.+ +.|.++|+.++.
T Consensus 550 a~~~ddf~I~vvD~~t~kvv--R~f~--gh~nritd~~FS~DgrWlisasmD-----~tIr~wDlpt~~----------- 609 (910)
T KOG1539|consen 550 AIALDDFSIRVVDVVTRKVV--REFW--GHGNRITDMTFSPDGRWLISASMD-----STIRTWDLPTGT----------- 609 (910)
T ss_pred hhhcCceeEEEEEchhhhhh--HHhh--ccccceeeeEeCCCCcEEEEeecC-----CcEEEEeccCcc-----------
Confidence 00123345777776653211 1122 223346788999999999987653 458899998752
Q ss_pred CCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEE
Q 003878 349 LLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVD 390 (789)
Q Consensus 349 ~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~d 390 (789)
....+.-+.....-.+||+|+.|+..+-. ...||.|.
T Consensus 610 --lID~~~vd~~~~sls~SPngD~LAT~Hvd---~~gIylWs 646 (910)
T KOG1539|consen 610 --LIDGLLVDSPCTSLSFSPNGDFLATVHVD---QNGIYLWS 646 (910)
T ss_pred --eeeeEecCCcceeeEECCCCCEEEEEEec---CceEEEEE
Confidence 11111111111223489999988755432 23577765
No 316
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=96.67 E-value=0.34 Score=50.04 Aligned_cols=235 Identities=11% Similarity=0.097 Sum_probs=120.6
Q ss_pred EeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceee--------eeecccccccccccc
Q 003878 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFH--------LTISLLNVPTYKLFL 206 (789)
Q Consensus 135 ~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~p~~~~~~ 206 (789)
..+.++||-+-+++.+. +|+ .|+++-+...+. |.+++++=..+| +.+-.+.+.++
T Consensus 136 T~V~FapDc~s~vv~~~-~g~---~l~vyk~~K~~d---------G~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~---- 198 (420)
T KOG2096|consen 136 TRVVFAPDCKSVVVSVK-RGN---KLCVYKLVKKTD---------GSGSHHFVHIDNLEFERKHQVDIINIGIAGN---- 198 (420)
T ss_pred eEEEECCCcceEEEEEc-cCC---EEEEEEeeeccc---------CCCCcccccccccccchhcccceEEEeecCC----
Confidence 35779999999999887 554 566665432211 000111100010 11112333333
Q ss_pred ccccceeeEEEeeeccccceeeeeeec---------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEE
Q 003878 207 YLRGIFFFFYLFSLVKSTIYSFWSVVS---------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEF 277 (789)
Q Consensus 207 ~~~~~~~~~~~~~s~~~g~~~l~~~~~---------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i 277 (789)
.+++++...+.+.-||..-. |.+....+-||||+.|+...+.. .+
T Consensus 199 -------~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFTp-------------------DV 252 (420)
T KOG2096|consen 199 -------AKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTP-------------------DV 252 (420)
T ss_pred -------ceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCCCCcEEEEecCCC-------------------Cc
Confidence 25566667777778887655 56667789999999999876532 12
Q ss_pred EEEEC--CCCC--CCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCC-CCCcccccccCCCCcc
Q 003878 278 YYHFL--GTKQ--SEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSAL-PEGLEGFKKRDGLLPF 352 (789)
Q Consensus 278 ~~~~l--g~~~--~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~ 352 (789)
.+|.+ +.+. .+...+|+...+...+.+++||++.++++-.+.++ .-+||=.|+.=. .+....++. . +
T Consensus 253 kVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG---~wriwdtdVrY~~~qDpk~Lk~---g-~- 324 (420)
T KOG2096|consen 253 KVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG---KWRIWDTDVRYEAGQDPKILKE---G-S- 324 (420)
T ss_pred eEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCC---cEEEeeccceEecCCCchHhhc---C-C-
Confidence 33321 2111 12234566655555667889999999987665443 234443333210 000001110 0 0
Q ss_pred Eeeec-cccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEe
Q 003878 353 VKLID-GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLS 426 (789)
Q Consensus 353 ~~l~~-~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~ 426 (789)
.++.. +....--..+|.|+.|++... ..|-.+..+.++...++ ..-....|..++++.+++.+++..+
T Consensus 325 ~pl~aag~~p~RL~lsP~g~~lA~s~g-----s~l~~~~se~g~~~~~~-e~~h~~~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 325 APLHAAGSEPVRLELSPSGDSLAVSFG-----SDLKVFASEDGKDYPEL-EDIHSTTISSISYSSDGKYIATCGD 393 (420)
T ss_pred cchhhcCCCceEEEeCCCCcEEEeecC-----CceEEEEcccCccchhH-HHhhcCceeeEEecCCCcEEeeecc
Confidence 11111 111111237899998886432 33555555555421111 1111245788899886666655443
No 317
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=96.65 E-value=0.011 Score=65.42 Aligned_cols=102 Identities=12% Similarity=0.093 Sum_probs=57.3
Q ss_pred CCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCC
Q 003878 271 SNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLL 350 (789)
Q Consensus 271 ~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~ 350 (789)
..++..|.+|++.+....-.++ .+...+++++|||||+.++-...+ ..|+++....+++ .+.++ +.
T Consensus 696 asyd~Ti~lWDl~~~~~~~~l~----gHtdqIf~~AWSpdGr~~AtVcKD-----g~~rVy~Prs~e~---pv~Eg--~g 761 (1012)
T KOG1445|consen 696 ASYDSTIELWDLANAKLYSRLV----GHTDQIFGIAWSPDGRRIATVCKD-----GTLRVYEPRSREQ---PVYEG--KG 761 (1012)
T ss_pred hhccceeeeeehhhhhhhheec----cCcCceeEEEECCCCcceeeeecC-----ceEEEeCCCCCCC---ccccC--CC
Confidence 4466789999998754332222 234457799999999999877643 4477777665431 11110 00
Q ss_pred ccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEEC
Q 003878 351 PFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDL 391 (789)
Q Consensus 351 ~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl 391 (789)
+ +....+. ..|.-||+.+++..-.....-+|.+++.
T Consensus 762 p----vgtRgAR-i~wacdgr~viv~Gfdk~SeRQv~~Y~A 797 (1012)
T KOG1445|consen 762 P----VGTRGAR-ILWACDGRIVIVVGFDKSSERQVQMYDA 797 (1012)
T ss_pred C----ccCccee-EEEEecCcEEEEecccccchhhhhhhhh
Confidence 0 1111222 2366688877766544333344555554
No 318
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=0.016 Score=68.89 Aligned_cols=204 Identities=13% Similarity=0.035 Sum_probs=117.5
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
+.++.|.+...-+.-+. ....+|++|++...... ..+.....+..+..++|...-++|+.
T Consensus 119 V~gLDfN~~q~nlLASG------------------a~~geI~iWDlnn~~tP--~~~~~~~~~~eI~~lsWNrkvqhILA 178 (1049)
T KOG0307|consen 119 VLGLDFNPFQGNLLASG------------------ADDGEILIWDLNKPETP--FTPGSQAPPSEIKCLSWNRKVSHILA 178 (1049)
T ss_pred eeeeeccccCCceeecc------------------CCCCcEEEeccCCcCCC--CCCCCCCCcccceEeccchhhhHHhh
Confidence 45677777766444331 22345899998653211 11111111223456788877777765
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc---ceeEEEecCCCEEEEEECCCCCCceEEEEECCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD---AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKE 393 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~ 393 (789)
+... +...-++|+... .+...+..... .....|.|++-.-+++...+...-.|.++|+.-
T Consensus 179 S~s~----sg~~~iWDlr~~-------------~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ 241 (1049)
T KOG0307|consen 179 SGSP----SGRAVIWDLRKK-------------KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF 241 (1049)
T ss_pred ccCC----CCCceeccccCC-------------CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccc
Confidence 5432 234667888762 22333333221 122348898755444444333456788888765
Q ss_pred CCC-eEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcC
Q 003878 394 PND-WFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTS 471 (789)
Q Consensus 394 ~~~-~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss 471 (789)
... .+++.-|. .-+-+++|.+. .+++++.-.|+ ++..|+.++|+.+..+.....-+..+.|.|.... .++..+
T Consensus 242 assP~k~~~~H~--~GilslsWc~~D~~lllSsgkD~--~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~-~~A~as 316 (1049)
T KOG0307|consen 242 ASSPLKILEGHQ--RGILSLSWCPQDPRLLLSSGKDN--RIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPS-VMAAAS 316 (1049)
T ss_pred cCCchhhhcccc--cceeeeccCCCCchhhhcccCCC--CeeEecCCCceEeeecCCCCcceeeeeecCCCcc-hhhhhe
Confidence 432 23343343 44668899874 58888888886 8999999999887776653222446777776553 345567
Q ss_pred CCCCcEEEEEE
Q 003878 472 FLIPGIVYQCN 482 (789)
Q Consensus 472 ~~~P~~ly~~d 482 (789)
+...-.||-+-
T Consensus 317 fdgkI~I~sl~ 327 (1049)
T KOG0307|consen 317 FDGKISIYSLQ 327 (1049)
T ss_pred eccceeeeeee
Confidence 76666666554
No 319
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=96.60 E-value=0.2 Score=57.09 Aligned_cols=139 Identities=11% Similarity=0.068 Sum_probs=84.5
Q ss_pred CeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEE-EecCCCEEEEEE
Q 003878 299 PKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEV-IANDDTVFTFLT 377 (789)
Q Consensus 299 ~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~dG~~l~~~t 377 (789)
+..+..++++|+.+.++-.+.+. +-.||.++ .+ ...-.+.......+.+ |++..+.+. .+
T Consensus 463 dKdIN~Vaia~ndkLiAT~SqDk---taKiW~le--~~-------------~l~~vLsGH~RGvw~V~Fs~~dq~la-T~ 523 (775)
T KOG0319|consen 463 DKDINCVAIAPNDKLIATGSQDK---TAKIWDLE--QL-------------RLLGVLSGHTRGVWCVSFSKNDQLLA-TC 523 (775)
T ss_pred cccccceEecCCCceEEeccccc---ceeeeccc--Cc-------------eEEEEeeCCccceEEEEeccccceeE-ec
Confidence 44466899999999888666543 35566554 31 1111222222223433 788766544 22
Q ss_pred CCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEee
Q 003878 378 NKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAIS 457 (789)
Q Consensus 378 n~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s 457 (789)
. ++..|-.|.+++..-.+++-.|. ..+.-+++..++.-+++.-.+| -|.+|+.++++....+..+...+-+++
T Consensus 524 S---gD~TvKIW~is~fSClkT~eGH~--~aVlra~F~~~~~qliS~~adG--liKlWnikt~eC~~tlD~H~DrvWaL~ 596 (775)
T KOG0319|consen 524 S---GDKTVKIWSISTFSCLKTFEGHT--SAVLRASFIRNGKQLISAGADG--LIKLWNIKTNECEMTLDAHNDRVWALS 596 (775)
T ss_pred c---CCceEEEEEeccceeeeeecCcc--ceeEeeeeeeCCcEEEeccCCC--cEEEEeccchhhhhhhhhccceeEEEe
Confidence 2 23556666666665344443343 3444555555467777777777 688899998887777877766676788
Q ss_pred cccCCc
Q 003878 458 ARREDS 463 (789)
Q Consensus 458 ~s~d~~ 463 (789)
.++.++
T Consensus 597 ~~~~~~ 602 (775)
T KOG0319|consen 597 VSPLLD 602 (775)
T ss_pred ecCccc
Confidence 777777
No 320
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=96.59 E-value=0.0056 Score=66.09 Aligned_cols=113 Identities=12% Similarity=0.052 Sum_probs=63.1
Q ss_pred CCCccEEEEEcCCCCccCCCCCCH-HHHHHHHc--CCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHH
Q 003878 535 DGSHPCLLYGYGGFNISVTPSFSV-SRTILMRH--LGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLIS 611 (789)
Q Consensus 535 ~~~~P~ll~~hGg~~~~~~~~~~~-~~~~~l~~--~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~ 611 (789)
+...|+++++||--+......+.. ....++.. ..+.|+++|+..+... .+..+. . +-...-.-+...+..|.+
T Consensus 68 n~~~pt~iiiHGw~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a~~--~Y~~a~-~-n~~~vg~~la~~l~~L~~ 143 (331)
T PF00151_consen 68 NPSKPTVIIIHGWTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGASN--NYPQAV-A-NTRLVGRQLAKFLSFLIN 143 (331)
T ss_dssp -TTSEEEEEE--TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHHSS---HHHHH-H-HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEcCcCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhccc--cccchh-h-hHHHHHHHHHHHHHHHHh
Confidence 457899999999666552334333 33456665 5899999998643321 111110 0 000111233445667775
Q ss_pred cCCCCCCcEEEEeeChHHHHHHHHHHhCCC--ceeEEEecCC
Q 003878 612 AGYTQSRKLCIEGGSNGGLLVGACINQRPD--LFGCALAHVG 651 (789)
Q Consensus 612 ~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd--~f~a~v~~~p 651 (789)
...+++++|-++|||.|+.+++.+..+-.. .+..+...-|
T Consensus 144 ~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDP 185 (331)
T PF00151_consen 144 NFGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDP 185 (331)
T ss_dssp HH---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-
T ss_pred hcCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCc
Confidence 555789999999999999999999887655 5555555444
No 321
>KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms]
Probab=96.58 E-value=0.003 Score=68.60 Aligned_cols=112 Identities=24% Similarity=0.243 Sum_probs=72.5
Q ss_pred EEEEEcCCCCccCCCC---CCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHc---C
Q 003878 540 CLLYGYGGFNISVTPS---FSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISA---G 613 (789)
Q Consensus 540 ~ll~~hGg~~~~~~~~---~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~---~ 613 (789)
++|++|||.-.+..+. |+... +.+....+|+.+|||-|. ||--+.-......+.-.+-|..=|++|+.++ -
T Consensus 137 VlVWiyGGGF~sGt~SLdvYdGk~--la~~envIvVs~NYRvG~-FGFL~l~~~~eaPGNmGl~DQqLAl~WV~~Ni~aF 213 (601)
T KOG4389|consen 137 VLVWIYGGGFYSGTPSLDVYDGKF--LAAVENVIVVSMNYRVGA-FGFLYLPGHPEAPGNMGLLDQQLALQWVQENIAAF 213 (601)
T ss_pred EEEEEEcCccccCCcceeeeccce--eeeeccEEEEEeeeeecc-ceEEecCCCCCCCCccchHHHHHHHHHHHHhHHHh
Confidence 9999999854444444 44432 223345889999999643 3321111111223333467788888998876 2
Q ss_pred CCCCCcEEEEeeChHHHHHHHHHHhCCC---ceeEEEecCCcccc
Q 003878 614 YTQSRKLCIEGGSNGGLLVGACINQRPD---LFGCALAHVGVMDM 655 (789)
Q Consensus 614 ~~d~~~i~i~G~S~GG~l~~~~~~~~pd---~f~a~v~~~p~~d~ 655 (789)
--||+||.+.|.|+|+..+.+-+.- |. +|+-+|+++|-++-
T Consensus 214 GGnp~~vTLFGESAGaASv~aHLls-P~S~glF~raIlQSGS~~~ 257 (601)
T KOG4389|consen 214 GGNPSRVTLFGESAGAASVVAHLLS-PGSRGLFHRAILQSGSLNN 257 (601)
T ss_pred CCCcceEEEeccccchhhhhheecC-CCchhhHHHHHhhcCCCCC
Confidence 3599999999999998776654433 43 89999999886653
No 322
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=96.57 E-value=0.35 Score=51.37 Aligned_cols=126 Identities=17% Similarity=0.221 Sum_probs=83.3
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
++..+-.+.|.|=...++- +|+|..+|.||.+-.+-......+.+. +..- .
T Consensus 80 Ht~~vLDi~w~PfnD~vIA----SgSeD~~v~vW~IPe~~l~~~ltepvv-~L~g----------------H-------- 130 (472)
T KOG0303|consen 80 HTAPVLDIDWCPFNDCVIA----SGSEDTKVMVWQIPENGLTRDLTEPVV-ELYG----------------H-------- 130 (472)
T ss_pred ccccccccccCccCCceee----cCCCCceEEEEECCCcccccCcccceE-EEee----------------c--------
Confidence 4566777889996655442 789999999999876632211111110 0000 0
Q ss_pred cceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCc
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED 289 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~ 289 (789)
+-+.+.++|.|-..-++.+ ++..+.|.+|++||+..
T Consensus 131 ------------------------~rrVg~V~wHPtA~NVLls------------------ag~Dn~v~iWnv~tgea-- 166 (472)
T KOG0303|consen 131 ------------------------QRRVGLVQWHPTAPNVLLS------------------AGSDNTVSIWNVGTGEA-- 166 (472)
T ss_pred ------------------------ceeEEEEeecccchhhHhh------------------ccCCceEEEEeccCCce--
Confidence 1146889999988777765 44567899999999743
Q ss_pred EEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCC
Q 003878 290 ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSAL 336 (789)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g 336 (789)
.+.. +++..+.+..|+.||.+++-++. ...|.++|..++
T Consensus 167 li~l---~hpd~i~S~sfn~dGs~l~Ttck-----DKkvRv~dpr~~ 205 (472)
T KOG0303|consen 167 LITL---DHPDMVYSMSFNRDGSLLCTTCK-----DKKVRVIDPRRG 205 (472)
T ss_pred eeec---CCCCeEEEEEeccCCceeeeecc-----cceeEEEcCCCC
Confidence 2222 25667889999999999986653 355888988775
No 323
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=96.57 E-value=0.0089 Score=49.92 Aligned_cols=57 Identities=16% Similarity=0.057 Sum_probs=42.2
Q ss_pred eEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCC
Q 003878 520 TKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYG 583 (789)
Q Consensus 520 ~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g 583 (789)
.+|....+.|++ .+..+|+++||-...+. .|.. ....|+++||.|+..|.||.|...
T Consensus 2 ~~L~~~~w~p~~----~~k~~v~i~HG~~eh~~--ry~~-~a~~L~~~G~~V~~~D~rGhG~S~ 58 (79)
T PF12146_consen 2 TKLFYRRWKPEN----PPKAVVVIVHGFGEHSG--RYAH-LAEFLAEQGYAVFAYDHRGHGRSE 58 (79)
T ss_pred cEEEEEEecCCC----CCCEEEEEeCCcHHHHH--HHHH-HHHHHHhCCCEEEEECCCcCCCCC
Confidence 677777777775 26789999999644332 3443 456677799999999999988654
No 324
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=96.54 E-value=0.2 Score=54.95 Aligned_cols=201 Identities=15% Similarity=0.113 Sum_probs=112.7
Q ss_pred EEEeEEeCCC--CcEEEEEEecCCceEEEEEEEEcCCCceec-ccccccccccccCccceeeeeeccccccccccccccc
Q 003878 133 ALIKVSVSED--AKYLAYALSYSGSDWATIKLMRIEDQIVEA-DALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 133 ~~~~~~~SpD--g~~la~~~~~~g~~~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
.+..+++||- ++-|||-.-..++...+++++.+..+..+. ..+-.+.+| + |.|=-
T Consensus 175 gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~-------------q---------LkW~~ 232 (561)
T COG5354 175 GILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGV-------------Q---------LKWQV 232 (561)
T ss_pred ceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeeccc-------------E---------EEEec
Confidence 4677889995 566788766666667889999988765543 222222222 2 33434
Q ss_pred cceeeEEEee----eccccc--eeeeeeec---------ccc--cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCC
Q 003878 210 GIFFFFYLFS----LVKSTI--YSFWSVVS---------QFK--FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSN 272 (789)
Q Consensus 210 ~~~~~~~~~~----s~~~g~--~~l~~~~~---------~~~--~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~ 272 (789)
.+.|.-++-. |+.+-- .+||.+.. .++ +..++|.|++++|+++....
T Consensus 233 ~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~---------------- 296 (561)
T COG5354 233 LGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYM---------------- 296 (561)
T ss_pred CCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEeccc----------------
Confidence 4444444332 333333 46666655 111 36799999999999986432
Q ss_pred cccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCcc
Q 003878 273 LYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPF 352 (789)
Q Consensus 273 ~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~ 352 (789)
+..+-.+++.+. +++-.|+.... ...+||.++|+++..-+.. ...+-+++..+. ...
T Consensus 297 -pa~~s~~~lr~N-----l~~~~Pe~~rN--T~~fsp~~r~il~agF~nl--~gni~i~~~~~r-------------f~~ 353 (561)
T COG5354 297 -PASVSVFDLRGN-----LRFYFPEQKRN--TIFFSPHERYILFAGFDNL--QGNIEIFDPAGR-------------FKV 353 (561)
T ss_pred -ccceeecccccc-----eEEecCCcccc--cccccCcccEEEEecCCcc--ccceEEeccCCc-------------eEE
Confidence 233555555432 33333322221 3567999999998765544 334555666542 111
Q ss_pred EeeeccccceeEEEecCCCEEEEEECC--CCCCceEEEEECCCC
Q 003878 353 VKLIDGFDAQYEVIANDDTVFTFLTNK--DAPKYKIIRVDLKEP 394 (789)
Q Consensus 353 ~~l~~~~~~~~~~~s~dG~~l~~~tn~--~~~~~~L~~~dl~~~ 394 (789)
...+.+....++.|+|||+.++.-+.. ...+..+-++++.+.
T Consensus 354 ~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 354 AGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred EEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 112334455677899999866644332 122344555555443
No 325
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=96.54 E-value=0.21 Score=52.74 Aligned_cols=169 Identities=15% Similarity=0.097 Sum_probs=94.4
Q ss_pred eeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCC-CCCccccc-----------ccCCCCccEeeecccccee-EEE
Q 003878 300 KYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSAL-PEGLEGFK-----------KRDGLLPFVKLIDGFDAQY-EVI 366 (789)
Q Consensus 300 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~-~~~ 366 (789)
..+.+++..+||.+++-.+.+ +.|-+++.++- .+..+... ......|+..+....+..- ..|
T Consensus 194 ~~V~sVsv~~sgtr~~SgS~D-----~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w 268 (423)
T KOG0313|consen 194 RSVDSVSVDSSGTRFCSGSWD-----TMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW 268 (423)
T ss_pred cceeEEEecCCCCeEEeeccc-----ceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEE
Confidence 345678888999887655443 23444442211 11111110 0011123333333333222 236
Q ss_pred ecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCc--e-e
Q 003878 367 ANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGS--L-L 443 (789)
Q Consensus 367 s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~--~-~ 443 (789)
++ ...+|-.+ -+..|.++|+.++.....++.. ..+..++..+..+|++....+. +|++||+.+|. . .
T Consensus 269 ~d-~~v~yS~S----wDHTIk~WDletg~~~~~~~~~---ksl~~i~~~~~~~Ll~~gssdr--~irl~DPR~~~gs~v~ 338 (423)
T KOG0313|consen 269 SD-ATVIYSVS----WDHTIKVWDLETGGLKSTLTTN---KSLNCISYSPLSKLLASGSSDR--HIRLWDPRTGDGSVVS 338 (423)
T ss_pred cC-CCceEeec----ccceEEEEEeecccceeeeecC---cceeEeecccccceeeecCCCC--ceeecCCCCCCCceeE
Confidence 54 44555332 2467999999987634444433 3466777776567887777664 78999997653 2 2
Q ss_pred eecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 444 HQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 444 ~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
..+..+..-|+++.++|.....+++.+ .-+++-+||+.+-
T Consensus 339 ~s~~gH~nwVssvkwsp~~~~~~~S~S---~D~t~klWDvRS~ 378 (423)
T KOG0313|consen 339 QSLIGHKNWVSSVKWSPTNEFQLVSGS---YDNTVKLWDVRST 378 (423)
T ss_pred EeeecchhhhhheecCCCCceEEEEEe---cCCeEEEEEeccC
Confidence 233334556778889988877766543 4457778887654
No 326
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=96.54 E-value=0.46 Score=51.32 Aligned_cols=203 Identities=13% Similarity=0.070 Sum_probs=116.5
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCC-----cEEEEecCCCCeeEEEEEEecCCc
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSE-----DILCWKDPEHPKYIFSGHVTEDGQ 312 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~-----~~~~~~~~~~~~~~~~~~~SpDG~ 312 (789)
.++.|++.-..-..+. ....++.+|++.....+ ...+|... ...+..++|.+-.+
T Consensus 181 ~glsWn~~~~g~Lls~------------------~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h--~~~VeDV~~h~~h~ 240 (422)
T KOG0264|consen 181 YGLSWNRQQEGTLLSG------------------SDDHTICLWDINAESKEDKVVDPKTIFSGH--EDVVEDVAWHPLHE 240 (422)
T ss_pred cccccccccceeEeec------------------cCCCcEEEEeccccccCCccccceEEeecC--Ccceehhhccccch
Confidence 5678888766655553 23456888888654432 23455543 33356788999888
Q ss_pred EEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc-cceeEEEecCCCEEEEEECCCCCCceEEEEEC
Q 003878 313 YLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF-DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDL 391 (789)
Q Consensus 313 ~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl 391 (789)
.|+.++.+ ...+.++|+.+++. .+........ ......|.|.+..++.+. +.+..|.++|+
T Consensus 241 ~lF~sv~d----d~~L~iwD~R~~~~-----------~~~~~~~ah~~~vn~~~fnp~~~~ilAT~---S~D~tV~LwDl 302 (422)
T KOG0264|consen 241 DLFGSVGD----DGKLMIWDTRSNTS-----------KPSHSVKAHSAEVNCVAFNPFNEFILATG---SADKTVALWDL 302 (422)
T ss_pred hhheeecC----CCeEEEEEcCCCCC-----------CCcccccccCCceeEEEeCCCCCceEEec---cCCCcEEEeec
Confidence 88877654 35688899885211 1111111111 112234777665554332 23578999999
Q ss_pred CCCCCeEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECCC-Ccee----------eecccC---CeeEEEe
Q 003878 392 KEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKN-GSLL----------HQLPIE---IGSVNAI 456 (789)
Q Consensus 392 ~~~~~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~t-G~~~----------~~l~~~---~~~v~~~ 456 (789)
.+-.. ....-+.....+..+.|+++ +.++++...++ +|.+||+.. |+.. +.|-.+ ...|..+
T Consensus 303 RnL~~-~lh~~e~H~dev~~V~WSPh~etvLASSg~D~--rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~Df 379 (422)
T KOG0264|consen 303 RNLNK-PLHTFEGHEDEVFQVEWSPHNETVLASSGTDR--RLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDF 379 (422)
T ss_pred hhccc-CceeccCCCcceEEEEeCCCCCceeEecccCC--cEEEEeccccccccChhhhccCCcceeEEecCcccccccc
Confidence 87541 11122233355778999984 56777777776 788888752 2210 111111 3346667
Q ss_pred ecccCCcEEEEEEcCCCCCcEEEEEECC
Q 003878 457 SARREDSVVFISFTSFLIPGIVYQCNLK 484 (789)
Q Consensus 457 s~s~d~~~l~~~~ss~~~P~~ly~~dl~ 484 (789)
+|.|....++.+.+.. ..+..|.+.
T Consensus 380 sWnp~ePW~I~SvaeD---N~LqIW~~s 404 (422)
T KOG0264|consen 380 SWNPNEPWTIASVAED---NILQIWQMA 404 (422)
T ss_pred cCCCCCCeEEEEecCC---ceEEEeecc
Confidence 7888888777765443 556666553
No 327
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=96.53 E-value=0.053 Score=55.95 Aligned_cols=62 Identities=10% Similarity=-0.127 Sum_probs=50.3
Q ss_pred CCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHH
Q 003878 706 YPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGF 778 (789)
Q Consensus 706 ~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~f 778 (789)
.+|-|.+.+.+|..|++.+.+++++..++. |.++....+.+++|........ .+....+.+|
T Consensus 178 ~~p~lylYS~~D~l~~~~~ve~~~~~~~~~----------G~~V~~~~f~~S~HV~H~r~~p-~~Y~~~v~~f 239 (240)
T PF05705_consen 178 RCPRLYLYSKADPLIPWRDVEEHAEEARRK----------GWDVRAEKFEDSPHVAHLRKHP-DRYWRAVDEF 239 (240)
T ss_pred CCCeEEecCCCCcCcCHHHHHHHHHHHHHc----------CCeEEEecCCCCchhhhcccCH-HHHHHHHHhh
Confidence 579999999999999999999999999987 9999999999999986544332 3444555554
No 328
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=96.53 E-value=0.0099 Score=67.39 Aligned_cols=130 Identities=15% Similarity=0.116 Sum_probs=77.8
Q ss_pred eEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCH----------------HHHHHHHcCCeEEEEEee-cCCCCC
Q 003878 520 TKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSV----------------SRTILMRHLGAVFCIANI-RGGGEY 582 (789)
Q Consensus 520 ~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~----------------~~~~~l~~~G~~v~~~~~-RG~g~~ 582 (789)
..+-.|++..++. ....|+||+++||||.+...++.. .-..|.. . ..++.+|. +|.| +
T Consensus 61 ~~lFyw~~~s~~~--~~~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~-~-~~~l~iDqP~G~G-~ 135 (462)
T PTZ00472 61 KHYFYWAFGPRNG--NPEAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNN-E-AYVIYVDQPAGVG-F 135 (462)
T ss_pred ceEEEEEEEcCCC--CCCCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCccccc-c-cCeEEEeCCCCcC-c
Confidence 5677777766542 357899999999998875432110 1123433 3 34566664 5644 3
Q ss_pred ChhHHhccc-ccCCcchHHHHHHHHHHHHHc-CCCCCCcEEEEeeChHHHHHHHHHHhC---C-------CceeEEEecC
Q 003878 583 GEEWHKGGA-LAKKQNCFDDFISASEYLISA-GYTQSRKLCIEGGSNGGLLVGACINQR---P-------DLFGCALAHV 650 (789)
Q Consensus 583 g~~~~~~~~-~~~~~~~~~D~~~~~~~L~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~~---p-------d~f~a~v~~~ 650 (789)
... .... ........+|+..+++...++ ......++.|.|+|+||..+-.++.+- . =-+++++...
T Consensus 136 S~~--~~~~~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~IGN 213 (462)
T PTZ00472 136 SYA--DKADYDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLAVGN 213 (462)
T ss_pred ccC--CCCCCCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEEEEec
Confidence 221 1111 111123457777777755543 333457999999999998876655431 1 1478999999
Q ss_pred Cccccc
Q 003878 651 GVMDML 656 (789)
Q Consensus 651 p~~d~~ 656 (789)
|++|..
T Consensus 214 g~~dp~ 219 (462)
T PTZ00472 214 GLTDPY 219 (462)
T ss_pred cccChh
Confidence 988764
No 329
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=96.52 E-value=0.12 Score=54.40 Aligned_cols=119 Identities=10% Similarity=-0.009 Sum_probs=71.0
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
+..+.|||..+.++.+..- ...|.+|++..++.+..+.+...+ ..+.-++|+.+-..|+.
T Consensus 260 VEDLqWSptE~~vfaScS~------------------DgsIrIWDiRs~~~~~~~~~kAh~--sDVNVISWnr~~~lLas 319 (440)
T KOG0302|consen 260 VEDLQWSPTEDGVFASCSC------------------DGSIRIWDIRSGPKKAAVSTKAHN--SDVNVISWNRREPLLAS 319 (440)
T ss_pred hhhhccCCccCceEEeeec------------------CceEEEEEecCCCccceeEeeccC--CceeeEEccCCcceeee
Confidence 5789999999999987532 235888999887766655554433 34556788877774443
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeE-EEecCCCEEEEEECCCCCCceEEEEECCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYE-VIANDDTVFTFLTNKDAPKYKIIRVDLKE 393 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dG~~l~~~tn~~~~~~~L~~~dl~~ 393 (789)
.. + ...+.++|+..-+. .+|+............ .|+|.....+..+ +.+.+|..+|+.-
T Consensus 320 G~---D--dGt~~iwDLR~~~~----------~~pVA~fk~Hk~pItsieW~p~e~s~iaas---g~D~QitiWDlsv 379 (440)
T KOG0302|consen 320 GG---D--DGTLSIWDLRQFKS----------GQPVATFKYHKAPITSIEWHPHEDSVIAAS---GEDNQITIWDLSV 379 (440)
T ss_pred cC---C--CceEEEEEhhhccC----------CCcceeEEeccCCeeEEEeccccCceEEec---cCCCcEEEEEeec
Confidence 32 2 34577888876321 2222222112222233 3888665555443 3346788888753
No 330
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=96.51 E-value=0.024 Score=55.94 Aligned_cols=128 Identities=18% Similarity=0.141 Sum_probs=80.2
Q ss_pred hHHH-HHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC--------ceeEEEecCCcccccccccccCCccch
Q 003878 598 CFDD-FISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPD--------LFGCALAHVGVMDMLRYHKFTIGHAWV 668 (789)
Q Consensus 598 ~~~D-~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd--------~f~a~v~~~p~~d~~~~~~~~~~~~~~ 668 (789)
.++- +....+|++++|--| +|.|+|.|+.|++.+++.... -|+-+|...|+.-.
T Consensus 87 ~~eesl~yl~~~i~enGPFD----GllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SGf~~~------------- 149 (230)
T KOG2551|consen 87 GFEESLEYLEDYIKENGPFD----GLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISGFKFP------------- 149 (230)
T ss_pred ChHHHHHHHHHHHHHhCCCc----cccccchhHHHHHHhhcccccCCcccCCCCeEEEEEEecCCCC-------------
Confidence 3444 444566778887655 899999999999998882210 24555555553321
Q ss_pred hhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCc
Q 003878 669 SDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNP 748 (789)
Q Consensus 669 ~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 748 (789)
+.+.+. ..+ ...+ .+|.|.+.|+.|..||...+..+++.....
T Consensus 150 ---~~~~~~------~~~-----~~~i----------~~PSLHi~G~~D~iv~~~~s~~L~~~~~~a------------- 192 (230)
T KOG2551|consen 150 ---SKKLDE------SAY-----KRPL----------STPSLHIFGETDTIVPSERSEQLAESFKDA------------- 192 (230)
T ss_pred ---cchhhh------hhh-----ccCC----------CCCeeEEecccceeecchHHHHHHHhcCCC-------------
Confidence 001010 111 1122 689999999999999999999999877642
Q ss_pred EEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCC
Q 003878 749 IIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 785 (789)
Q Consensus 749 ~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 785 (789)
.+... .+||...... .....+.+|+...+-.
T Consensus 193 -~vl~H-pggH~VP~~~----~~~~~i~~fi~~~~~~ 223 (230)
T KOG2551|consen 193 -TVLEH-PGGHIVPNKA----KYKEKIADFIQSFLQE 223 (230)
T ss_pred -eEEec-CCCccCCCch----HHHHHHHHHHHHHHHh
Confidence 33444 5889886543 3444566777665543
No 331
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.51 E-value=0.045 Score=58.36 Aligned_cols=181 Identities=10% Similarity=0.073 Sum_probs=100.3
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
..+++++||+.++.... .-.+++++..... ++.++..+...+.++++||||+.|+..
T Consensus 148 k~vaf~~~gs~latgg~-------------------dg~lRv~~~Ps~~----t~l~e~~~~~eV~DL~FS~dgk~lasi 204 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGT-------------------DGTLRVWEWPSML----TILEEIAHHAEVKDLDFSPDGKFLASI 204 (398)
T ss_pred eEEEEcCCCCEeeeccc-------------------cceEEEEecCcch----hhhhhHhhcCccccceeCCCCcEEEEe
Confidence 46888888888875432 2246666654321 233334444456789999999999877
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccce----eEEEecC--CCEEEEEECCCCCCceEEEEEC
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ----YEVIAND--DTVFTFLTNKDAPKYKIIRVDL 391 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~s~d--G~~l~~~tn~~~~~~~L~~~dl 391 (789)
..+ ...++++.+|. ++...++ ++.. -..|+.| +..+++.++.. +...|..+++
T Consensus 205 g~d------~~~VW~~~~g~-------------~~a~~t~-~~k~~~~~~cRF~~d~~~~~l~laa~~~-~~~~v~~~~~ 263 (398)
T KOG0771|consen 205 GAD------SARVWSVNTGA-------------ALARKTP-FSKDEMFSSCRFSVDNAQETLRLAASQF-PGGGVRLCDI 263 (398)
T ss_pred cCC------ceEEEEeccCc-------------hhhhcCC-cccchhhhhceecccCCCceEEEEEecC-CCCceeEEEe
Confidence 533 24566776641 1222221 1111 1224443 35566666543 3334444444
Q ss_pred C--CCC---CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecc-cCCeeEEEeecccCCcEE
Q 003878 392 K--EPN---DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLP-IEIGSVNAISARREDSVV 465 (789)
Q Consensus 392 ~--~~~---~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~-~~~~~v~~~s~s~d~~~l 465 (789)
. .+. .++..+. ....+.+++++.++.+++....+| .|-+++..+=+...-++ .+.+.|..+.++||.+.+
T Consensus 264 ~~w~~~~~l~~~~~~~--~~~siSsl~VS~dGkf~AlGT~dG--sVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~ 339 (398)
T KOG0771|consen 264 SLWSGSNFLRLRKKIK--RFKSISSLAVSDDGKFLALGTMDG--SVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYL 339 (398)
T ss_pred eeeccccccchhhhhh--ccCcceeEEEcCCCcEEEEeccCC--cEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcc
Confidence 2 221 1222222 124688999998788887777776 45556654333222222 235678889999988765
Q ss_pred E
Q 003878 466 F 466 (789)
Q Consensus 466 ~ 466 (789)
.
T Consensus 340 ~ 340 (398)
T KOG0771|consen 340 A 340 (398)
T ss_pred c
Confidence 4
No 332
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=96.45 E-value=0.14 Score=60.77 Aligned_cols=56 Identities=13% Similarity=0.246 Sum_probs=38.3
Q ss_pred EEEEecCCCCCceEE-eccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCC-ceEEEEEEEEcCCC
Q 003878 106 VLYVQDSLDAKAKVL-LDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSG-SDWATIKLMRIEDQ 168 (789)
Q Consensus 106 ~~~~~~~~~~~~~~l-~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g-~~~~~i~v~dl~tg 168 (789)
.|.+.+..+...+++ +..+ ..+-++.|||||++|||.++..+ .....||+.||.+.
T Consensus 330 ~L~~~D~dG~n~~~ve~~~~-------~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~ 387 (912)
T TIGR02171 330 NLAYIDYTKGASRAVEIEDT-------ISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNAS 387 (912)
T ss_pred eEEEEecCCCCceEEEecCC-------CceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhcc
Confidence 366666544455554 4333 23678999999999999666555 22567999999876
No 333
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.43 E-value=1.4 Score=45.49 Aligned_cols=195 Identities=11% Similarity=0.048 Sum_probs=107.1
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEe-cCCcEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVT-EDGQYLVM 316 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~S-pDG~~l~~ 316 (789)
.+++|.++...||++-. ...+|++++..+.. ..++..+. ..++.+. +||+. ++
T Consensus 3 Egp~~d~~~g~l~~~D~------------------~~~~i~~~~~~~~~---~~~~~~~~----~~G~~~~~~~g~l-~v 56 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDI------------------PGGRIYRVDPDTGE---VEVIDLPG----PNGMAFDRPDGRL-YV 56 (246)
T ss_dssp EEEEEETTTTEEEEEET------------------TTTEEEEEETTTTE---EEEEESSS----EEEEEEECTTSEE-EE
T ss_pred cceEEECCCCEEEEEEc------------------CCCEEEEEECCCCe---EEEEecCC----CceEEEEccCCEE-EE
Confidence 57999997788988843 23469998887642 23344443 2356666 66554 44
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc-c---ceeEEEecCCCEEEEEECCCC---CC--ceEE
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF-D---AQYEVIANDDTVFTFLTNKDA---PK--YKII 387 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~-~---~~~~~~s~dG~~l~~~tn~~~---~~--~~L~ 387 (789)
... ..+.++|.++++. ..+.....+. . .....++++|+ ||+...... .. ++|+
T Consensus 57 ~~~------~~~~~~d~~~g~~-----------~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~ 118 (246)
T PF08450_consen 57 ADS------GGIAVVDPDTGKV-----------TVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVY 118 (246)
T ss_dssp EET------TCEEEEETTTTEE-----------EEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEE
T ss_pred EEc------CceEEEecCCCcE-----------EEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceE
Confidence 432 2245558776421 1111111110 0 11234788887 776654321 12 6899
Q ss_pred EEECCCCCCeEEeccCCCCceeeeEEEecCC-EEEEEEEeCCeEEEEEEECCC-Cc-e--eeec-ccC--CeeEEEeecc
Q 003878 388 RVDLKEPNDWFEVIPEAERDVLESATAVNLN-QMIVSYLSDVKYVLQIRDLKN-GS-L--LHQL-PIE--IGSVNAISAR 459 (789)
Q Consensus 388 ~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~-~lv~~~~~~g~~~L~~~dl~t-G~-~--~~~l-~~~--~~~v~~~s~s 459 (789)
+++.+ ++ .+.+...- ....++++++++ .||+.....+ +|+.++++. +. . .+.+ .++ .+...++..+
T Consensus 119 ~~~~~-~~-~~~~~~~~--~~pNGi~~s~dg~~lyv~ds~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD 192 (246)
T PF08450_consen 119 RIDPD-GK-VTVVADGL--GFPNGIAFSPDGKTLYVADSFNG--RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVD 192 (246)
T ss_dssp EEETT-SE-EEEEEEEE--SSEEEEEEETTSSEEEEEETTTT--EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEB
T ss_pred EECCC-Ce-EEEEecCc--ccccceEECCcchheeecccccc--eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEc
Confidence 99988 43 34443322 345689999865 4665444443 688888752 22 1 1222 223 3346678888
Q ss_pred cCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 460 REDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 460 ~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
.+++ |+++.- ....|+++|.+ |+
T Consensus 193 ~~G~-l~va~~---~~~~I~~~~p~-G~ 215 (246)
T PF08450_consen 193 SDGN-LWVADW---GGGRIVVFDPD-GK 215 (246)
T ss_dssp TTS--EEEEEE---TTTEEEEEETT-SC
T ss_pred CCCC-EEEEEc---CCCEEEEECCC-cc
Confidence 8776 555432 56799999987 64
No 334
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=96.37 E-value=0.093 Score=55.87 Aligned_cols=131 Identities=11% Similarity=0.006 Sum_probs=76.1
Q ss_pred ccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccE
Q 003878 274 YHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFV 353 (789)
Q Consensus 274 ~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~ 353 (789)
..+|+.|++.+... +..-+.+ ..+.++..|+||..|+..+. .+.+-++|+.+.... .++.
T Consensus 321 DkkvRfwD~Rs~~~----~~sv~~g-g~vtSl~ls~~g~~lLsssR-----Ddtl~viDlRt~eI~----------~~~s 380 (459)
T KOG0288|consen 321 DKKVRFWDIRSADK----TRSVPLG-GRVTSLDLSMDGLELLSSSR-----DDTLKVIDLRTKEIR----------QTFS 380 (459)
T ss_pred ccceEEEeccCCce----eeEeecC-cceeeEeeccCCeEEeeecC-----CCceeeeecccccEE----------EEee
Confidence 34588888765432 2222322 34678999999999986642 234677888763210 0000
Q ss_pred e--eeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCC-CCceeeeEEEecCCEEEEEEEeCCe
Q 003878 354 K--LIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEA-ERDVLESATAVNLNQMIVSYLSDVK 429 (789)
Q Consensus 354 ~--l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~-~~~~i~~v~~~~~~~lv~~~~~~g~ 429 (789)
. ...+.+..-..|||+|++++ .++.++.|+.|++.+++ .+.++... .+..|..++|.+.+.-+++...+..
T Consensus 381 A~g~k~asDwtrvvfSpd~~Yva----AGS~dgsv~iW~v~tgK-lE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~ 454 (459)
T KOG0288|consen 381 AEGFKCASDWTRVVFSPDGSYVA----AGSADGSVYIWSVFTGK-LEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKA 454 (459)
T ss_pred ccccccccccceeEECCCCceee----eccCCCcEEEEEccCce-EEEEeccCCCCcceEEEEEcCCCchhhcccCCcc
Confidence 0 00111222356899999776 34567899999999887 44444332 2235788888875444444444443
No 335
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=96.37 E-value=0.082 Score=54.18 Aligned_cols=210 Identities=10% Similarity=0.123 Sum_probs=109.4
Q ss_pred eEEeccCCCCCC-------CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCcccee
Q 003878 118 KVLLDPNTLSDD-------GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFF 190 (789)
Q Consensus 118 ~~l~d~~~~~~~-------~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~ 190 (789)
.-|+|..+-+.. +...+.++++.|.|.+|+. |.+..+++++|+.|-+...-..... +|..
T Consensus 196 vKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllv-----gTdHp~~rlYdv~T~QcfvsanPd~----qht~---- 262 (430)
T KOG0640|consen 196 VKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLV-----GTDHPTLRLYDVNTYQCFVSANPDD----QHTG---- 262 (430)
T ss_pred EEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEE-----ecCCCceeEEeccceeEeeecCccc----cccc----
Confidence 456776543321 2345789999999999995 5567899999999875332111111 1111
Q ss_pred eeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCcccc
Q 003878 191 HLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETD 270 (789)
Q Consensus 191 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~ 270 (789)
....+.+|+.|+ ||.+...
T Consensus 263 ---------------------------------------------ai~~V~Ys~t~~-lYvTaSk--------------- 281 (430)
T KOG0640|consen 263 ---------------------------------------------AITQVRYSSTGS-LYVTASK--------------- 281 (430)
T ss_pred ---------------------------------------------ceeEEEecCCcc-EEEEecc---------------
Confidence 146778888874 5555321
Q ss_pred CCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCC
Q 003878 271 SNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLL 350 (789)
Q Consensus 271 ~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~ 350 (789)
.-.|.+|+--+.. =+..++...+...+.+..|+.+|+||+-+.. .+-+++|.+.++.
T Consensus 282 ---DG~IklwDGVS~r--Cv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~-----DS~vkLWEi~t~R------------- 338 (430)
T KOG0640|consen 282 ---DGAIKLWDGVSNR--CVRTIGNAHGGSEVCSAVFTKNGKYILSSGK-----DSTVKLWEISTGR------------- 338 (430)
T ss_pred ---CCcEEeeccccHH--HHHHHHhhcCCceeeeEEEccCCeEEeecCC-----cceeeeeeecCCc-------------
Confidence 1235555421110 0111222222344678899999999975432 4668888888741
Q ss_pred ccEeeecc----ccc--eeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEE
Q 003878 351 PFVKLIDG----FDA--QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSY 424 (789)
Q Consensus 351 ~~~~l~~~----~~~--~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~ 424 (789)
+++.-+.. ... ....|.+..+++++- .+ ....|+.||..+.. -..+.+-+......-+.-++.+-.++..
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~p--DE-as~slcsWdaRtad-r~~l~slgHn~a~R~i~HSP~~p~FmTc 414 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFP--DE-ASNSLCSWDARTAD-RVALLSLGHNGAVRWIVHSPVEPAFMTC 414 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEcc--cc-ccCceeeccccchh-hhhhcccCCCCCceEEEeCCCCCceeee
Confidence 12222110 000 112344444443332 22 23568888876654 2334443333334444444434455555
Q ss_pred EeCC
Q 003878 425 LSDV 428 (789)
Q Consensus 425 ~~~g 428 (789)
++|-
T Consensus 415 sdD~ 418 (430)
T KOG0640|consen 415 SDDF 418 (430)
T ss_pred cccc
Confidence 5554
No 336
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=96.34 E-value=0.017 Score=61.78 Aligned_cols=132 Identities=21% Similarity=0.243 Sum_probs=84.8
Q ss_pred EEEEEEEecCCCCCCCCccEEEEEcCCCCc----cCCCCCCHHHHHHHHcCCeEEEEEeecCCCC---CChhHHhccc--
Q 003878 521 KIPMFIVSKKNIKLDGSHPCLLYGYGGFNI----SVTPSFSVSRTILMRHLGAVFCIANIRGGGE---YGEEWHKGGA-- 591 (789)
Q Consensus 521 ~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~----~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~---~g~~~~~~~~-- 591 (789)
+-+..+..-...-..+..|+++|. |.-|. ....+| +..+..+.+-.++.+..|=-|+ ||.+-+....
T Consensus 64 tF~qRylin~~fw~~g~gPIffYt-GNEGdie~Fa~ntGF---m~D~Ap~~~AllVFaEHRyYGeS~PFG~~s~k~~~hl 139 (492)
T KOG2183|consen 64 TFDQRYLINDDFWKKGEGPIFFYT-GNEGDIEWFANNTGF---MWDLAPELKALLVFAEHRYYGESLPFGSQSYKDARHL 139 (492)
T ss_pred ceeeEEEEecccccCCCCceEEEe-CCcccHHHHHhccch---HHhhhHhhCceEEEeehhccccCCCCcchhccChhhh
Confidence 344444444443333447888776 22111 111222 2344556788889999886554 5655222211
Q ss_pred -ccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEE-ecCCccccc
Q 003878 592 -LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCAL-AHVGVMDML 656 (789)
Q Consensus 592 -~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v-~~~p~~d~~ 656 (789)
...-+.+..|+...+.+|..........|+++|+|+||+|+++.=.++|++..+++ +.+|++-+.
T Consensus 140 gyLtseQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWfRlKYPHiv~GAlAaSAPvl~f~ 206 (492)
T KOG2183|consen 140 GYLTSEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWFRLKYPHIVLGALAASAPVLYFE 206 (492)
T ss_pred ccccHHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHHHhcChhhhhhhhhccCceEeec
Confidence 12234568999999999998866777899999999999999999999999776654 456766543
No 337
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=96.31 E-value=0.26 Score=52.12 Aligned_cols=151 Identities=16% Similarity=0.080 Sum_probs=91.6
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
+.++.|++ ...+|+ ..-.+.|..|++.++...+.+.. ...+..+..+|..+.|+-
T Consensus 263 Vs~V~w~d--~~v~yS------------------~SwDHTIk~WDletg~~~~~~~~-----~ksl~~i~~~~~~~Ll~~ 317 (423)
T KOG0313|consen 263 VSSVVWSD--ATVIYS------------------VSWDHTIKVWDLETGGLKSTLTT-----NKSLNCISYSPLSKLLAS 317 (423)
T ss_pred eeeEEEcC--CCceEe------------------ecccceEEEEEeecccceeeeec-----CcceeEeecccccceeee
Confidence 57899985 445555 23457899999998766544332 223567888998887765
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc-ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
.+. ...+.++|..++. + ..+...+...-. ..-.-|+|-....++... -+..+.++|+.+..
T Consensus 318 gss-----dr~irl~DPR~~~-g---------s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S---~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 318 GSS-----DRHIRLWDPRTGD-G---------SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGS---YDNTVKLWDVRSTK 379 (423)
T ss_pred cCC-----CCceeecCCCCCC-C---------ceeEEeeecchhhhhheecCCCCceEEEEEe---cCCeEEEEEeccCC
Confidence 543 3457888887742 1 122223333211 111238886555544333 24678889988765
Q ss_pred -CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEE
Q 003878 396 -DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIR 435 (789)
Q Consensus 396 -~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~ 435 (789)
.+-.+..++ ..+..+.|.+ +.+++++..|. .|+++
T Consensus 380 ~plydI~~h~--DKvl~vdW~~-~~~IvSGGaD~--~l~i~ 415 (423)
T KOG0313|consen 380 APLYDIAGHN--DKVLSVDWNE-GGLIVSGGADN--KLRIF 415 (423)
T ss_pred CcceeeccCC--ceEEEEeccC-CceEEeccCcc--eEEEe
Confidence 455666664 5677889987 66777776665 44443
No 338
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=96.30 E-value=2 Score=47.14 Aligned_cols=282 Identities=13% Similarity=0.084 Sum_probs=149.0
Q ss_pred CCceEEeccCCCCCCC-----c--EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceec-ccccc-cccccccC
Q 003878 115 AKAKVLLDPNTLSDDG-----T--AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA-DALSW-VCFCFSHS 185 (789)
Q Consensus 115 ~~~~~l~d~~~~~~~~-----~--~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~-~~~~~-~~~~~~~~ 185 (789)
|....|.|...++... + -.+.++.|+.... |. +.+.+|.....|+..|=.++++-. ...++ ...|
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lv-vas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~C---- 84 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LV-VASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFC---- 84 (673)
T ss_pred CCceEEeecccccCccccccCCCCCcceeeeccccce-EE-EeecCCceeEEEecccCCCCccceeeccccchHHH----
Confidence 4456777777665331 1 1245566666543 33 334456555666666666554211 11111 0111
Q ss_pred ccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCC
Q 003878 186 FGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDA 265 (789)
Q Consensus 186 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~ 265 (789)
+.-+.++.++.+..-+++-+||.+..++-...+. -|. .++.|+.++..++ .
T Consensus 85 ----------------------v~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lk-dh~-stvt~v~YN~~De----y- 135 (673)
T KOG4378|consen 85 ----------------------VACASQSLYEISGGQSGCVKIWDLRAKLIHRFLK-DHQ-STVTYVDYNNTDE----Y- 135 (673)
T ss_pred ----------------------HhhhhcceeeeccCcCceeeehhhHHHHHhhhcc-CCc-ceeEEEEecCCcc----e-
Confidence 2234455566677788999999875421111111 122 3555555544221 0
Q ss_pred CccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccc
Q 003878 266 GTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKK 345 (789)
Q Consensus 266 ~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~ 345 (789)
.......-.|-+|.+.+++.. ..|..+.+ ..+.-+.+||..++++..+.+. ..|.+||+.+.. .
T Consensus 136 --iAsvs~gGdiiih~~~t~~~t--t~f~~~sg-qsvRll~ys~skr~lL~~asd~----G~VtlwDv~g~s----p--- 199 (673)
T KOG4378|consen 136 --IASVSDGGDIIIHGTKTKQKT--TTFTIDSG-QSVRLLRYSPSKRFLLSIASDK----GAVTLWDVQGMS----P--- 199 (673)
T ss_pred --eEEeccCCcEEEEecccCccc--cceecCCC-CeEEEeecccccceeeEeeccC----CeEEEEeccCCC----c---
Confidence 000112234788888777654 23443322 2234578999999998777543 457888887621 0
Q ss_pred cCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEE
Q 003878 346 RDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYL 425 (789)
Q Consensus 346 ~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~ 425 (789)
...+...-.. ...-..++|....|++... -+.+|+.+|.........|+.. ..+..+++.+++..++...
T Consensus 200 ---~~~~~~~HsA-P~~gicfspsne~l~vsVG---~Dkki~~yD~~s~~s~~~l~y~---~Plstvaf~~~G~~L~aG~ 269 (673)
T KOG4378|consen 200 ---IFHASEAHSA-PCRGICFSPSNEALLVSVG---YDKKINIYDIRSQASTDRLTYS---HPLSTVAFSECGTYLCAGN 269 (673)
T ss_pred ---ccchhhhccC-CcCcceecCCccceEEEec---ccceEEEeecccccccceeeec---CCcceeeecCCceEEEeec
Confidence 1111111000 0011237886666665443 3478999998765433444433 4578899998788888888
Q ss_pred eCCeEEEEEEECCCCce-eeecccCCeeEEEeecc
Q 003878 426 SDVKYVLQIRDLKNGSL-LHQLPIEIGSVNAISAR 459 (789)
Q Consensus 426 ~~g~~~L~~~dl~tG~~-~~~l~~~~~~v~~~s~s 459 (789)
.+| +|+.||+..-+. +..+......|..++|.
T Consensus 270 s~G--~~i~YD~R~~k~Pv~v~sah~~sVt~vafq 302 (673)
T KOG4378|consen 270 SKG--ELIAYDMRSTKAPVAVRSAHDASVTRVAFQ 302 (673)
T ss_pred CCc--eEEEEecccCCCCceEeeecccceeEEEee
Confidence 777 899999973332 22222233445555543
No 339
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=96.30 E-value=0.47 Score=51.93 Aligned_cols=69 Identities=13% Similarity=0.071 Sum_probs=44.1
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
.+-+++||||..|++...++ .||++.+...... ......-. ..++..+.||+|++++.-
T Consensus 450 ls~v~ysp~G~~lAvgs~d~-------------------~iyiy~Vs~~g~~-y~r~~k~~-gs~ithLDwS~Ds~~~~~ 508 (626)
T KOG2106|consen 450 LSVVRYSPDGAFLAVGSHDN-------------------HIYIYRVSANGRK-YSRVGKCS-GSPITHLDWSSDSQFLVS 508 (626)
T ss_pred eEEEEEcCCCCEEEEecCCC-------------------eEEEEEECCCCcE-EEEeeeec-CceeEEeeecCCCceEEe
Confidence 36789999999999875442 4777776554332 12222212 245678999999999975
Q ss_pred EEEcCCCCceEEEEE
Q 003878 317 CIEENCDPVNKVYYC 331 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~ 331 (789)
.+. ..+|..+
T Consensus 509 ~S~-----d~eiLyW 518 (626)
T KOG2106|consen 509 NSG-----DYEILYW 518 (626)
T ss_pred ccC-----ceEEEEE
Confidence 442 3556666
No 340
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.29 E-value=0.21 Score=52.50 Aligned_cols=224 Identities=11% Similarity=0.002 Sum_probs=124.0
Q ss_pred EEEeeeccccceeeeeeec---------ccc-cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCC
Q 003878 215 FYLFSLVKSTIYSFWSVVS---------QFK-FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGT 284 (789)
Q Consensus 215 ~~~~~s~~~g~~~l~~~~~---------~~~-~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~ 284 (789)
.+.+++.++++.++|...- .++ ..+++++.-|+.|+-...+ . .+.+|+.++
T Consensus 121 ~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsD-----------------l--~~~LWd~~~ 181 (406)
T KOG0295|consen 121 ALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSD-----------------L--SAKLWDFDT 181 (406)
T ss_pred eEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCc-----------------c--chhheeHHH
Confidence 5677888999999998765 111 3567787778777644322 1 156666655
Q ss_pred CCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeE
Q 003878 285 KQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYE 364 (789)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 364 (789)
-...-... .++ ..-+..+.+=|-|.+|+-.+. .+.|..++.++|- .........+ =+-
T Consensus 182 ~~~c~ks~-~gh--~h~vS~V~f~P~gd~ilS~sr-----D~tik~We~~tg~-------------cv~t~~~h~e-wvr 239 (406)
T KOG0295|consen 182 FFRCIKSL-IGH--EHGVSSVFFLPLGDHILSCSR-----DNTIKAWECDTGY-------------CVKTFPGHSE-WVR 239 (406)
T ss_pred HHHHHHHh-cCc--ccceeeEEEEecCCeeeeccc-----ccceeEEecccce-------------eEEeccCchH-hEE
Confidence 32111111 112 233557888899988875543 3457888888852 1112221111 011
Q ss_pred EEecCCCEEEEEECCCCCCceEEEEECCCCC------------CeEEeccCCCCceeeeEEEec-CCEEEEEEEeCCeEE
Q 003878 365 VIANDDTVFTFLTNKDAPKYKIIRVDLKEPN------------DWFEVIPEAERDVLESATAVN-LNQMIVSYLSDVKYV 431 (789)
Q Consensus 365 ~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~------------~~~~l~~~~~~~~i~~v~~~~-~~~lv~~~~~~g~~~ 431 (789)
.+.+.++..++.+.. ....|-.+-+++.+ +.....|...-..+.....+. +..++++.++|+ .
T Consensus 240 ~v~v~~DGti~As~s--~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk--t 315 (406)
T KOG0295|consen 240 MVRVNQDGTIIASCS--NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK--T 315 (406)
T ss_pred EEEecCCeeEEEecC--CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccc--e
Confidence 233333333333332 23456666665542 001111111101111111111 135777777776 7
Q ss_pred EEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 432 LQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 432 L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
|..||..+|..+-+|.....-|.+++++|.|+.++ |...-.++..||+..+.
T Consensus 316 Ik~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~----ScaDDktlrvwdl~~~~ 367 (406)
T KOG0295|consen 316 IKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYIL----SCADDKTLRVWDLKNLQ 367 (406)
T ss_pred EEEEeccCCeEEEEEecccceeeeeEEcCCCeEEE----EEecCCcEEEEEeccce
Confidence 89999999987666665566688899999888665 33456788889988775
No 341
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.29 E-value=0.24 Score=55.71 Aligned_cols=263 Identities=15% Similarity=0.138 Sum_probs=138.0
Q ss_pred EEEeeeccccceeeeeeeccccc----------------ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEE
Q 003878 215 FYLFSLVKSTIYSFWSVVSQFKF----------------SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFY 278 (789)
Q Consensus 215 ~~~~~s~~~g~~~l~~~~~~~~~----------------~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~ 278 (789)
++||++.++|+..+|.++-.... ..++...+|+.|+-.. ....|.
T Consensus 38 ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~S-------------------sDtTVK 98 (735)
T KOG0308|consen 38 RYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISAS-------------------SDTTVK 98 (735)
T ss_pred ceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEec-------------------CCceEE
Confidence 57999999999999988651110 1222233455554332 233577
Q ss_pred EEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeee-c
Q 003878 279 YHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI-D 357 (789)
Q Consensus 279 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~-~ 357 (789)
+|+...+..-..-+.. .|..|+-.++.-...+.++.+. +- ..+|+++|+.+++..+.. .....+...+. .
T Consensus 99 ~W~~~~~~~~c~stir--~H~DYVkcla~~ak~~~lvaSg--GL--D~~IflWDin~~~~~l~~---s~n~~t~~sl~sG 169 (735)
T KOG0308|consen 99 VWNAHKDNTFCMSTIR--THKDYVKCLAYIAKNNELVASG--GL--DRKIFLWDINTGTATLVA---SFNNVTVNSLGSG 169 (735)
T ss_pred EeecccCcchhHhhhh--cccchheeeeecccCceeEEec--CC--CccEEEEEccCcchhhhh---hccccccccCCCC
Confidence 7766544311111111 2344554455423333444332 22 467999999886421000 00011111222 1
Q ss_pred cccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEEC
Q 003878 358 GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDL 437 (789)
Q Consensus 358 ~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl 437 (789)
..+..|.....+...+++ + ++....|..+|..+.+....|..|. ..+..+.+.+++.-+++.+.|| .|.+||+
T Consensus 170 ~k~siYSLA~N~t~t~iv-s--Ggtek~lr~wDprt~~kimkLrGHT--dNVr~ll~~dDGt~~ls~sSDg--tIrlWdL 242 (735)
T KOG0308|consen 170 PKDSIYSLAMNQTGTIIV-S--GGTEKDLRLWDPRTCKKIMKLRGHT--DNVRVLLVNDDGTRLLSASSDG--TIRLWDL 242 (735)
T ss_pred CccceeeeecCCcceEEE-e--cCcccceEEeccccccceeeeeccc--cceEEEEEcCCCCeEeecCCCc--eEEeeec
Confidence 122234332222222332 2 2345678888988877566676666 4577777877777888888887 7899999
Q ss_pred CCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCCceEEEeeeccCCCCCCCCCc--EEEEEEec
Q 003878 438 KNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFH--VHQVFVPS 515 (789)
Q Consensus 438 ~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~l~~~~~~~~~~~~~~--~~~~~~~s 515 (789)
..-+.+..+..+...+-++..+++-..++. -..-+.+|+-|+.+.. +.+++..+.-| ...-.+. .+.+|+.+
T Consensus 243 gqQrCl~T~~vH~e~VWaL~~~~sf~~vYs----G~rd~~i~~Tdl~n~~-~~tlick~daP-v~~l~~~~~~~~~WvtT 316 (735)
T KOG0308|consen 243 GQQRCLATYIVHKEGVWALQSSPSFTHVYS----GGRDGNIYRTDLRNPA-KSTLICKEDAP-VLKLHLHEHDNSVWVTT 316 (735)
T ss_pred cccceeeeEEeccCceEEEeeCCCcceEEe----cCCCCcEEecccCCch-hheEeecCCCc-hhhhhhccccCCceeee
Confidence 533333344445333556666666565552 2455688888888743 35555543332 1111111 23457777
Q ss_pred CCC
Q 003878 516 KDG 518 (789)
Q Consensus 516 ~dg 518 (789)
.|+
T Consensus 317 tds 319 (735)
T KOG0308|consen 317 TDS 319 (735)
T ss_pred ccc
Confidence 776
No 342
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=96.28 E-value=0.054 Score=58.63 Aligned_cols=89 Identities=12% Similarity=0.098 Sum_probs=58.8
Q ss_pred HHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC
Q 003878 560 RTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR 639 (789)
Q Consensus 560 ~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~ 639 (789)
...++.++|.-|.+++.|+=.. +.+ .........+++..|++.+.+. +-.++|-+.|++.||.+...+++.+
T Consensus 131 ~V~~l~~~g~~vfvIsw~nPd~-~~~-----~~~~edYi~e~l~~aid~v~~i--tg~~~InliGyCvGGtl~~~ala~~ 202 (445)
T COG3243 131 LVRWLLEQGLDVFVISWRNPDA-SLA-----AKNLEDYILEGLSEAIDTVKDI--TGQKDINLIGYCVGGTLLAAALALM 202 (445)
T ss_pred HHHHHHHcCCceEEEeccCchH-hhh-----hccHHHHHHHHHHHHHHHHHHH--hCccccceeeEecchHHHHHHHHhh
Confidence 3456666999999999875321 111 1111112224455677777665 3447899999999999999988888
Q ss_pred CCc-eeEEEecCCccccc
Q 003878 640 PDL-FGCALAHVGVMDML 656 (789)
Q Consensus 640 pd~-f~a~v~~~p~~d~~ 656 (789)
+.. ++.+....-.+|+.
T Consensus 203 ~~k~I~S~T~lts~~DF~ 220 (445)
T COG3243 203 AAKRIKSLTLLTSPVDFS 220 (445)
T ss_pred hhcccccceeeecchhhc
Confidence 876 77777665555543
No 343
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=96.26 E-value=0.062 Score=55.62 Aligned_cols=149 Identities=17% Similarity=0.090 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC------CCceeEEEecCCcccccccccccCCccchhhcCCC
Q 003878 601 DFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR------PDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCS 674 (789)
Q Consensus 601 D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~------pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p 674 (789)
=+..++.+|.++.-+ +++-++||||||+.+..++..+ |.+=+-+....||-....... .....-...-| |
T Consensus 88 wl~~vl~~L~~~Y~~--~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~~~~~-~~~~~~~~~~g-p 163 (255)
T PF06028_consen 88 WLKKVLKYLKKKYHF--KKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGILGMND-DQNQNDLNKNG-P 163 (255)
T ss_dssp HHHHHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTTCCSC--TTTT-CSTT--B
T ss_pred HHHHHHHHHHHhcCC--CEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCccccccc-cchhhhhcccC-C
Confidence 355677888877433 5999999999999999988874 444555555555544332221 10000012224 4
Q ss_pred -CcHHHHHHHHhc-CcccCCCCCCCCCCCCCCCCCeEEEEecC------CCCCCCcHHHHHHHHHHHHhhccCCCCCCCC
Q 003878 675 -EEEEEFYWLIKY-SPLHNVRRPWEQNPDKPFQYPSTLLLTAD------HDDRVVPLHSLKLLATMQYVLCTSLENSPQT 746 (789)
Q Consensus 675 -~~~~~~~~l~~~-sP~~~v~~~~~~~~~~~~~~pp~Li~~g~------~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~ 746 (789)
...+.|+.|.+. . .+..+ ...+|-+.|. .|.+||...++.+.-.++.. .
T Consensus 164 ~~~~~~y~~l~~~~~--~~~p~-----------~i~VLnI~G~~~~g~~sDG~V~~~Ss~sl~~L~~~~----------~ 220 (255)
T PF06028_consen 164 KSMTPMYQDLLKNRR--KNFPK-----------NIQVLNIYGDLEDGSNSDGIVPNASSLSLRYLLKNR----------A 220 (255)
T ss_dssp SS--HHHHHHHHTHG--GGSTT-----------T-EEEEEEEESBTTCSBTSSSBHHHHCTHHHHCTTT----------S
T ss_pred cccCHHHHHHHHHHH--hhCCC-----------CeEEEEEecccCCCCCCCeEEeHHHHHHHHHHhhcc----------c
Confidence 233445555543 2 22222 4589999998 89999988877776666654 4
Q ss_pred CcEEEEEeCC--CCcCCCCchhhHHHHHHHHHHHH
Q 003878 747 NPIIGRIERK--AGHGVGLPTQKMIDEAADRYGFM 779 (789)
Q Consensus 747 ~~~~l~~~~~--~gH~~~~~~~~~~~~~~~~~~fl 779 (789)
....-.++.| +.|...-... +....+..||
T Consensus 221 ~~Y~e~~v~G~~a~HS~LheN~---~V~~~I~~FL 252 (255)
T PF06028_consen 221 KSYQEKTVTGKDAQHSQLHENP---QVDKLIIQFL 252 (255)
T ss_dssp SEEEEEEEESGGGSCCGGGCCH---HHHHHHHHHH
T ss_pred CceEEEEEECCCCccccCCCCH---HHHHHHHHHh
Confidence 4555555544 6787543323 3334556665
No 344
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=96.22 E-value=0.026 Score=59.24 Aligned_cols=111 Identities=13% Similarity=0.047 Sum_probs=70.6
Q ss_pred ccEEEEEcCCCCccCCCCCCHHHHHHHHc---CCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHH----HHHHH
Q 003878 538 HPCLLYGYGGFNISVTPSFSVSRTILMRH---LGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISA----SEYLI 610 (789)
Q Consensus 538 ~P~ll~~hGg~~~~~~~~~~~~~~~~l~~---~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~----~~~L~ 610 (789)
.++++++-|.||. ..|...++..|.+ ..+.++.....|....... .........-+.+|.++- ++.++
T Consensus 2 ~~li~~IPGNPGl---v~fY~~Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~--~~~~~~~~~~sL~~QI~hk~~~i~~~~ 76 (266)
T PF10230_consen 2 RPLIVFIPGNPGL---VEFYEEFLSALYEKLNPQFEILGISHAGHSTSPSN--SKFSPNGRLFSLQDQIEHKIDFIKELI 76 (266)
T ss_pred cEEEEEECCCCCh---HHHHHHHHHHHHHhCCCCCeeEEecCCCCcCCccc--ccccCCCCccCHHHHHHHHHHHHHHHh
Confidence 4789999887775 3444444444432 4788998888886543322 000012334455555553 33333
Q ss_pred HcCCCCCCcEEEEeeChHHHHHHHHHHhCC---CceeEEEecCCcc
Q 003878 611 SAGYTQSRKLCIEGGSNGGLLVGACINQRP---DLFGCALAHVGVM 653 (789)
Q Consensus 611 ~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p---d~f~a~v~~~p~~ 653 (789)
........++.++|||.|+++++.++.+.| ..+..++...|.+
T Consensus 77 ~~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi 122 (266)
T PF10230_consen 77 PQKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTI 122 (266)
T ss_pred hhhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCcc
Confidence 322114468999999999999999999999 5677777777754
No 345
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=96.20 E-value=0.039 Score=60.50 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=27.2
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCcee
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVE 171 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~ 171 (789)
.+..+.+||||++||.+.. . ..|+|+|-.+.+.+
T Consensus 292 ~in~f~FS~DG~~LA~VSq-D----GfLRvF~fdt~eLl 325 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQ-D----GFLRIFDFDTQELL 325 (636)
T ss_pred cccceeEcCCCceEEEEec-C----ceEEEeeccHHHHH
Confidence 4678899999999997654 3 47999999887554
No 346
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=96.19 E-value=0.77 Score=52.97 Aligned_cols=176 Identities=15% Similarity=0.080 Sum_probs=99.9
Q ss_pred CcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCc
Q 003878 272 NLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLP 351 (789)
Q Consensus 272 ~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 351 (789)
.++.+|++|++.++. .+.+..... ..+..+.. ++..++..+.++ .|-++++.++ ..
T Consensus 308 s~D~tVkVW~v~n~~--~l~l~~~h~--~~V~~v~~--~~~~lvsgs~d~-----~v~VW~~~~~-------------~c 363 (537)
T KOG0274|consen 308 SRDNTVKVWDVTNGA--CLNLLRGHT--GPVNCVQL--DEPLLVSGSYDG-----TVKVWDPRTG-------------KC 363 (537)
T ss_pred cCCceEEEEeccCcc--eEEEecccc--ccEEEEEe--cCCEEEEEecCc-----eEEEEEhhhc-------------ee
Confidence 356779999987543 344444322 23334444 477777666542 4777787763 22
Q ss_pred cEeeeccccceeEEEecCC-CEEEEEECCCCCCceEEEEECCCC-CCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCe
Q 003878 352 FVKLIDGFDAQYEVIANDD-TVFTFLTNKDAPKYKIIRVDLKEP-NDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVK 429 (789)
Q Consensus 352 ~~~l~~~~~~~~~~~s~dG-~~l~~~tn~~~~~~~L~~~dl~~~-~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~ 429 (789)
+..+.......+.. ..++ .+++ . +.-+..|..+|+.++ +-...+ .+. ...+..+... +.++++...++
T Consensus 364 l~sl~gH~~~V~sl-~~~~~~~~~-S---gs~D~~IkvWdl~~~~~c~~tl-~~h-~~~v~~l~~~--~~~Lvs~~aD~- 433 (537)
T KOG0274|consen 364 LKSLSGHTGRVYSL-IVDSENRLL-S---GSLDTTIKVWDLRTKRKCIHTL-QGH-TSLVSSLLLR--DNFLVSSSADG- 433 (537)
T ss_pred eeeecCCcceEEEE-EecCcceEE-e---eeeccceEeecCCchhhhhhhh-cCC-cccccccccc--cceeEeccccc-
Confidence 33343333323332 2344 4444 2 223467999999887 412222 221 2333444433 46666776666
Q ss_pred EEEEEEECCCCceeeecccC-CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCCc
Q 003878 430 YVLQIRDLKNGSLLHQLPIE-IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETP 488 (789)
Q Consensus 430 ~~L~~~dl~tG~~~~~l~~~-~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~ 488 (789)
.|.+||..+++.++.+..+ .+.+..+... +..++.. ...+.+..+|+.+++.
T Consensus 434 -~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~~il~s---~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 434 -TIKLWDAEEGECLRTLEGRHVGGVSALALG---KEEILCS---SDDGSVKLWDLRSGTL 486 (537)
T ss_pred -cEEEeecccCceeeeeccCCcccEEEeecC---cceEEEE---ecCCeeEEEecccCch
Confidence 7999999988887777763 4666666543 2333332 3467888889988863
No 347
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=96.13 E-value=0.27 Score=58.40 Aligned_cols=86 Identities=12% Similarity=0.065 Sum_probs=52.6
Q ss_pred cceEEEEeCCcEEEE-EEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEE
Q 003878 237 FSSIAWTHDSKGFFY-SRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLV 315 (789)
Q Consensus 237 ~~~~~wspDg~~i~y-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~ 315 (789)
..+++|||||+.|+| +.... ..+...||+++|.+.....+.+--+ ...+..-.+.+.|..++
T Consensus 352 i~sP~~SPDG~~vAY~ts~e~--------------~~g~s~vYv~~L~t~~~~~vkl~ve---~aaiprwrv~e~gdt~i 414 (912)
T TIGR02171 352 VYHPDISPDGKKVAFCTGIEG--------------LPGKSSVYVRNLNASGSGLVKLPVE---NAAIPRWRVLENGDTVI 414 (912)
T ss_pred eecCcCCCCCCEEEEEEeecC--------------CCCCceEEEEehhccCCCceEeecc---cccccceEecCCCCeEE
Confidence 467999999999999 53321 1244569999999876654333111 11233345678888877
Q ss_pred EEEEcCCCC-------ceEEEEEECCCCCCC
Q 003878 316 MCIEENCDP-------VNKVYYCDLSALPEG 339 (789)
Q Consensus 316 ~~~~~~~~~-------~~~i~~~d~~~g~~~ 339 (789)
+...+.... ...-|.+..+.|+.+
T Consensus 415 vyv~~a~nn~d~~~~~~~stw~v~f~~gkfg 445 (912)
T TIGR02171 415 VYVSDASNNKDDATFAAYSTWQVPFANGKFG 445 (912)
T ss_pred EEEcCCCCCcchhhhhhcceEEEEecCCCCC
Confidence 665443211 123577777777543
No 348
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=96.09 E-value=0.15 Score=55.90 Aligned_cols=185 Identities=10% Similarity=0.125 Sum_probs=100.4
Q ss_pred Eeeeccccceeeeeeec---------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCC
Q 003878 217 LFSLVKSTIYSFWSVVS---------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQS 287 (789)
Q Consensus 217 ~~~s~~~g~~~l~~~~~---------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~ 287 (789)
+.++..+|.+.|-.-.. .-...+-.|+|||..|+-.. ..-.|..|....-..
T Consensus 78 ~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~G-------------------EDG~iKiWSrsGMLR 138 (737)
T KOG1524|consen 78 LLICSNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAG-------------------EDGVIKIWSRSGMLR 138 (737)
T ss_pred EEEEcCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeec-------------------CCceEEEEeccchHH
Confidence 44555566665543222 11124568999998887542 222355554322111
Q ss_pred CcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee-EEE
Q 003878 288 EDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVI 366 (789)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~ 366 (789)
. +++ +. ...+..++|.|+...++|... .++++-++.... +...|+.. + +... ..|
T Consensus 139 S-tl~-Q~---~~~v~c~~W~p~S~~vl~c~g------~h~~IKpL~~n~----------k~i~WkAH-D--GiiL~~~W 194 (737)
T KOG1524|consen 139 S-TVV-QN---EESIRCARWAPNSNSIVFCQG------GHISIKPLAANS----------KIIRWRAH-D--GLVLSLSW 194 (737)
T ss_pred H-HHh-hc---CceeEEEEECCCCCceEEecC------CeEEEeeccccc----------ceeEEecc-C--cEEEEeec
Confidence 1 111 11 112457899999999999863 347777776421 11122211 1 1112 237
Q ss_pred ecCCCEEEEEECCCCCCceEEEEECCCCCCeEEecc-CCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeee
Q 003878 367 ANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIP-EAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQ 445 (789)
Q Consensus 367 s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~-~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~ 445 (789)
++..+.++ .++.+++.-.+|.-+. .|+. ..++..|.+++|.+ +.+++..+-+. ++
T Consensus 195 ~~~s~lI~----sgGED~kfKvWD~~G~----~Lf~S~~~ey~ITSva~np-d~~~~v~S~nt---~R------------ 250 (737)
T KOG1524|consen 195 STQSNIIA----SGGEDFRFKIWDAQGA----NLFTSAAEEYAITSVAFNP-EKDYLLWSYNT---AR------------ 250 (737)
T ss_pred Ccccccee----ecCCceeEEeecccCc----ccccCChhccceeeeeecc-ccceeeeeeee---ee------------
Confidence 77555433 2345677777886543 2332 22346799999999 57776555432 22
Q ss_pred cccC-CeeEEEeecccCCcEEEEE
Q 003878 446 LPIE-IGSVNAISARREDSVVFIS 468 (789)
Q Consensus 446 l~~~-~~~v~~~s~s~d~~~l~~~ 468 (789)
+..| .|++..++||+||.++...
T Consensus 251 ~~~p~~GSifnlsWS~DGTQ~a~g 274 (737)
T KOG1524|consen 251 FSSPRVGSIFNLSWSADGTQATCG 274 (737)
T ss_pred ecCCCccceEEEEEcCCCceeecc
Confidence 3333 5677788888888777654
No 349
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=96.09 E-value=0.54 Score=49.55 Aligned_cols=114 Identities=12% Similarity=0.074 Sum_probs=68.0
Q ss_pred ccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEE
Q 003878 236 KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLV 315 (789)
Q Consensus 236 ~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~ 315 (789)
.+.++.|.+||..+.-... ....|.+|+..+++... ++... ...+.-+.|||||.+++
T Consensus 197 pVtsmqwn~dgt~l~tAS~------------------gsssi~iWdpdtg~~~p-L~~~g---lgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 197 PVTSMQWNEDGTILVTASF------------------GSSSIMIWDPDTGQKIP-LIPKG---LGGFSLLKWSPDGDVLF 254 (445)
T ss_pred eeeEEEEcCCCCEEeeccc------------------CcceEEEEcCCCCCccc-ccccC---CCceeeEEEcCCCCEEE
Confidence 3589999999988875433 33458889988876543 33222 22244578999999998
Q ss_pred EEEEcCCCCceEEE-EEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECC
Q 003878 316 MCIEENCDPVNKVY-YCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLK 392 (789)
Q Consensus 316 ~~~~~~~~~~~~i~-~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~ 392 (789)
..+-+. ...+| .-..-+ ..++.. ..+ ......|+|+|+.|.|..... ..||.+...
T Consensus 255 aAt~da---vfrlw~e~q~wt-------------~erw~l-gsg-rvqtacWspcGsfLLf~~sgs---p~lysl~f~ 311 (445)
T KOG2139|consen 255 AATCDA---VFRLWQENQSWT-------------KERWIL-GSG-RVQTACWSPCGSFLLFACSGS---PRLYSLTFD 311 (445)
T ss_pred Eecccc---eeeeehhcccce-------------ecceec-cCC-ceeeeeecCCCCEEEEEEcCC---ceEEEEeec
Confidence 766433 23344 111111 011211 112 223356999999999877542 467776554
No 350
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.05 E-value=0.42 Score=51.04 Aligned_cols=15 Identities=20% Similarity=0.552 Sum_probs=14.0
Q ss_pred ceEEEEeCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYS 252 (789)
Q Consensus 238 ~~~~wspDg~~i~y~ 252 (789)
.+++|||||+.+|++
T Consensus 166 NGla~SpDg~tly~a 180 (307)
T COG3386 166 NGLAFSPDGKTLYVA 180 (307)
T ss_pred CceEECCCCCEEEEE
Confidence 789999999999987
No 351
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=96.05 E-value=0.04 Score=56.18 Aligned_cols=47 Identities=19% Similarity=0.355 Sum_probs=32.6
Q ss_pred HHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHhCC---CceeEEEe
Q 003878 602 FISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQRP---DLFGCALA 648 (789)
Q Consensus 602 ~~~~~~~L~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~p---d~f~a~v~ 648 (789)
+..+++.+.+. ....+.+|.++||||||+++-.++...+ +.++.+|.
T Consensus 66 ~~~~i~~i~~~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iit 118 (225)
T PF07819_consen 66 LAEAIKYILELYKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIIT 118 (225)
T ss_pred HHHHHHHHHHhhhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEE
Confidence 34456665544 2467889999999999999888776643 34555554
No 352
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=96.02 E-value=0.15 Score=54.28 Aligned_cols=94 Identities=12% Similarity=0.076 Sum_probs=60.2
Q ss_pred EecCCCEEEEEECCCCCCceEEEEECCCCCCeEEec-cCCC--CceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCce
Q 003878 366 IANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVI-PEAE--RDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSL 442 (789)
Q Consensus 366 ~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~-~~~~--~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~ 442 (789)
.+++|..+...+ .+..|-++|+.+.+ .+..+ .+.- ......+.+++++..++.++.+| .|++|+..+|+.
T Consensus 349 ls~~g~~lLsss----RDdtl~viDlRt~e-I~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dg--sv~iW~v~tgKl 421 (459)
T KOG0288|consen 349 LSMDGLELLSSS----RDDTLKVIDLRTKE-IRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADG--SVYIWSVFTGKL 421 (459)
T ss_pred eccCCeEEeeec----CCCceeeeeccccc-EEEEeeccccccccccceeEECCCCceeeeccCCC--cEEEEEccCceE
Confidence 677887766442 23457777887765 22222 2211 11234567788778888888887 799999998987
Q ss_pred eeecccC--CeeEEEeecccCCcEEE
Q 003878 443 LHQLPIE--IGSVNAISARREDSVVF 466 (789)
Q Consensus 443 ~~~l~~~--~~~v~~~s~s~d~~~l~ 466 (789)
...+..+ ...|..++|++.|..++
T Consensus 422 E~~l~~s~s~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 422 EKVLSLSTSNAAITSLSWNPSGSGLL 447 (459)
T ss_pred EEEeccCCCCcceEEEEEcCCCchhh
Confidence 6666655 22477788887776544
No 353
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.02 E-value=0.089 Score=54.68 Aligned_cols=142 Identities=13% Similarity=0.093 Sum_probs=72.9
Q ss_pred CCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEE
Q 003878 310 DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRV 389 (789)
Q Consensus 310 DG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~ 389 (789)
|.++|+-.+. ...|.+++..++. +.+...+.....+... ..++|++.. ..+..|-.+
T Consensus 329 d~kyIVsASg-----DRTikvW~~st~e--------------fvRtl~gHkRGIAClQ-Yr~rlvVSG---SSDntIRlw 385 (499)
T KOG0281|consen 329 DDKYIVSASG-----DRTIKVWSTSTCE--------------FVRTLNGHKRGIACLQ-YRDRLVVSG---SSDNTIRLW 385 (499)
T ss_pred ccceEEEecC-----CceEEEEecccee--------------eehhhhcccccceehh-ccCeEEEec---CCCceEEEE
Confidence 6677654432 2447788887753 2222222221222211 233455432 334678889
Q ss_pred ECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeeccc---------CCeeEEEeeccc
Q 003878 390 DLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI---------EIGSVNAISARR 460 (789)
Q Consensus 390 dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~---------~~~~v~~~s~s~ 460 (789)
|+..|.-.+.|-.+. ..+.-+.+. +.-++++--+| .|.+||+.++...+.... ..|.|..+.+
T Consensus 386 di~~G~cLRvLeGHE--eLvRciRFd--~krIVSGaYDG--kikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF-- 457 (499)
T KOG0281|consen 386 DIECGACLRVLEGHE--ELVRCIRFD--NKRIVSGAYDG--KIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF-- 457 (499)
T ss_pred eccccHHHHHHhchH--Hhhhheeec--Cceeeeccccc--eEEEEecccccCCcccccchHHHhhhhccceeEEEee--
Confidence 998886333332222 445556654 34455565666 789999987754332211 1334434443
Q ss_pred CCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 461 EDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 461 d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
|.-+++ +-+.-.++..||...+
T Consensus 458 D~fqIv----sssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 458 DEFQII----SSSHDDTILIWDFLNG 479 (499)
T ss_pred cceEEE----eccCCCeEEEEEcCCC
Confidence 332222 2245567888887666
No 354
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.98 E-value=0.55 Score=49.58 Aligned_cols=120 Identities=18% Similarity=0.166 Sum_probs=76.0
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
..+..+++++.+.||||-.+.. ..+|+|||+.+-+.+. .|.-. .|
T Consensus 130 ~gl~AlS~n~~n~ylAyp~s~t---~GdV~l~d~~nl~~v~-~I~aH-------~~------------------------ 174 (391)
T KOG2110|consen 130 KGLCALSPNNANCYLAYPGSTT---SGDVVLFDTINLQPVN-TINAH-------KG------------------------ 174 (391)
T ss_pred cceEeeccCCCCceEEecCCCC---CceEEEEEcccceeee-EEEec-------CC------------------------
Confidence 4567788888999999975543 4689999988764332 22211 11
Q ss_pred eeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEE
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL 291 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~ 291 (789)
....++++|||..|+-. +....-|+++.+..++ ...
T Consensus 175 ------------------------~lAalafs~~G~llATA------------------SeKGTVIRVf~v~~G~--kl~ 210 (391)
T KOG2110|consen 175 ------------------------PLAALAFSPDGTLLATA------------------SEKGTVIRVFSVPEGQ--KLY 210 (391)
T ss_pred ------------------------ceeEEEECCCCCEEEEe------------------ccCceEEEEEEcCCcc--Eee
Confidence 25788999999999854 2333446666664432 222
Q ss_pred EEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCC
Q 003878 292 CWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSA 335 (789)
Q Consensus 292 ~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~ 335 (789)
-|...-.+..+.+++||||+++|..+++. ..|+++-+++
T Consensus 211 eFRRG~~~~~IySL~Fs~ds~~L~~sS~T-----eTVHiFKL~~ 249 (391)
T KOG2110|consen 211 EFRRGTYPVSIYSLSFSPDSQFLAASSNT-----ETVHIFKLEK 249 (391)
T ss_pred eeeCCceeeEEEEEEECCCCCeEEEecCC-----CeEEEEEecc
Confidence 23333334557789999999999876642 3366665554
No 355
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.96 E-value=1.4 Score=51.62 Aligned_cols=215 Identities=13% Similarity=0.158 Sum_probs=113.7
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
+...+.++.+.|++-..+ +|++.+.|+||+.++.+.+- ++.+. +-|+
T Consensus 50 HdGpVRgv~FH~~qplFV-----SGGDDykIkVWnYk~rrclf-tL~GH--------------------------lDYV- 96 (1202)
T KOG0292|consen 50 HDGPVRGVDFHPTQPLFV-----SGGDDYKIKVWNYKTRRCLF-TLLGH--------------------------LDYV- 96 (1202)
T ss_pred cCCccceeeecCCCCeEE-----ecCCccEEEEEecccceehh-hhccc--------------------------ccee-
Confidence 334578999999998765 68889999999999886553 22221 1122
Q ss_pred cceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCc
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED 289 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~ 289 (789)
....|.|.=-+|+-. ...++|++|+..+...
T Consensus 97 ----------------------------Rt~~FHheyPWIlSA-------------------SDDQTIrIWNwqsr~~-- 127 (1202)
T KOG0292|consen 97 ----------------------------RTVFFHHEYPWILSA-------------------SDDQTIRIWNWQSRKC-- 127 (1202)
T ss_pred ----------------------------EEeeccCCCceEEEc-------------------cCCCeEEEEeccCCce--
Confidence 233344333344422 1234577777765432
Q ss_pred EEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccc-------cc--------cCCCCccEe
Q 003878 290 ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGF-------KK--------RDGLLPFVK 354 (789)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-------~~--------~~~~~~~~~ 354 (789)
+.+..+ +..|+.-.+|.|....++-.+- ...|.++|+.+...+.... .- ++.....+.
T Consensus 128 iavltG--HnHYVMcAqFhptEDlIVSaSL-----DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~ 200 (1202)
T KOG0292|consen 128 IAVLTG--HNHYVMCAQFHPTEDLIVSASL-----DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKH 200 (1202)
T ss_pred EEEEec--CceEEEeeccCCccceEEEecc-----cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeee
Confidence 333333 4457777888887776654432 3457888876532110000 00 000001111
Q ss_pred eecccc--ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEE
Q 003878 355 LIDGFD--AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVL 432 (789)
Q Consensus 355 l~~~~~--~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L 432 (789)
+..+.+ ..+..|.|. .=+|++..+....+|++++-. +.|+.=+--+.-..+.++-+.+...++++..+|. .|
T Consensus 201 VLEGHDRGVNwaAfhpT--lpliVSG~DDRqVKlWrmnet--KaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDk--si 274 (1202)
T KOG0292|consen 201 VLEGHDRGVNWAAFHPT--LPLIVSGADDRQVKLWRMNET--KAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDK--SI 274 (1202)
T ss_pred eecccccccceEEecCC--cceEEecCCcceeeEEEeccc--cceeehhhhcccCCcceEEecCccceeEecCCCc--cE
Confidence 122222 123334332 112333333234566666532 2365333333235677888877556888888886 67
Q ss_pred EEEECCC
Q 003878 433 QIRDLKN 439 (789)
Q Consensus 433 ~~~dl~t 439 (789)
++||.+.
T Consensus 275 rVwDm~k 281 (1202)
T KOG0292|consen 275 RVWDMTK 281 (1202)
T ss_pred EEEeccc
Confidence 8888863
No 356
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=95.96 E-value=0.046 Score=57.48 Aligned_cols=124 Identities=15% Similarity=0.142 Sum_probs=79.4
Q ss_pred CCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeee
Q 003878 115 AKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTI 194 (789)
Q Consensus 115 ~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (789)
+.|+ +|...+.. ++.+|..++|||..+-+.++.+-.| .|+|||+.++...+-..... |.+ ++
T Consensus 244 g~W~--vd~~Pf~g-H~~SVEDLqWSptE~~vfaScS~Dg----sIrIWDiRs~~~~~~~~~kA------h~s-----DV 305 (440)
T KOG0302|consen 244 GSWK--VDQRPFTG-HTKSVEDLQWSPTEDGVFASCSCDG----SIRIWDIRSGPKKAAVSTKA------HNS-----DV 305 (440)
T ss_pred Ccee--ecCccccc-cccchhhhccCCccCceEEeeecCc----eEEEEEecCCCccceeEeec------cCC-----ce
Confidence 5554 36655543 6678889999999999988777666 69999999984332111111 000 23
Q ss_pred ccccccccccccccccceeeEEEeeeccccceeeeeeec-------------ccccceEEEEeCCcEEEEEEccCCCCCC
Q 003878 195 SLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVS-------------QFKFSSIAWTHDSKGFFYSRYPAPKEGK 261 (789)
Q Consensus 195 ~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~-------------~~~~~~~~wspDg~~i~y~~~~~~~~~~ 261 (789)
|.+.+-.. . .+|.+.+.+|+..||.+-. .....++.|+|....++-.
T Consensus 306 NVISWnr~--------~---~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaa--------- 365 (440)
T KOG0302|consen 306 NVISWNRR--------E---PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAA--------- 365 (440)
T ss_pred eeEEccCC--------c---ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEe---------
Confidence 33332222 1 3788999999999998755 2224788999866665544
Q ss_pred CCCCCccccCCcccEEEEEECCCC
Q 003878 262 DMDAGTETDSNLYHEFYYHFLGTK 285 (789)
Q Consensus 262 ~~~~~~~~~~~~~~~i~~~~lg~~ 285 (789)
++...+|-+|+|...
T Consensus 366 ---------sg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 366 ---------SGEDNQITIWDLSVE 380 (440)
T ss_pred ---------ccCCCcEEEEEeecc
Confidence 334456778887653
No 357
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=95.90 E-value=0.25 Score=53.78 Aligned_cols=117 Identities=16% Similarity=0.193 Sum_probs=85.4
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccce
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIF 212 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 212 (789)
.+.-+.+||--+.|.-..+..| .+.+||+.+....--..+. |++
T Consensus 166 svRll~ys~skr~lL~~asd~G----~VtlwDv~g~sp~~~~~~~------HsA-------------------------- 209 (673)
T KOG4378|consen 166 SVRLLRYSPSKRFLLSIASDKG----AVTLWDVQGMSPIFHASEA------HSA-------------------------- 209 (673)
T ss_pred eEEEeecccccceeeEeeccCC----eEEEEeccCCCcccchhhh------ccC--------------------------
Confidence 3556788999888887666555 7899999876443211110 110
Q ss_pred eeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEE
Q 003878 213 FFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILC 292 (789)
Q Consensus 213 ~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~ 292 (789)
...+++|||-...|+++ .+...+|+.++++.....+.++
T Consensus 210 -----------------------P~~gicfspsne~l~vs------------------VG~Dkki~~yD~~s~~s~~~l~ 248 (673)
T KOG4378|consen 210 -----------------------PCRGICFSPSNEALLVS------------------VGYDKKINIYDIRSQASTDRLT 248 (673)
T ss_pred -----------------------CcCcceecCCccceEEE------------------ecccceEEEeecccccccceee
Confidence 23689999988888876 4566789999999888888888
Q ss_pred EecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCC
Q 003878 293 WKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSAL 336 (789)
Q Consensus 293 ~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g 336 (789)
|+.| +..++++++|-+|++... ..+|+.+|+...
T Consensus 249 y~~P-----lstvaf~~~G~~L~aG~s-----~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 249 YSHP-----LSTVAFSECGTYLCAGNS-----KGELIAYDMRST 282 (673)
T ss_pred ecCC-----cceeeecCCceEEEeecC-----CceEEEEecccC
Confidence 8765 347899999999988764 356999999874
No 358
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=95.88 E-value=0.014 Score=65.19 Aligned_cols=87 Identities=20% Similarity=0.207 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHH
Q 003878 555 SFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGA 634 (789)
Q Consensus 555 ~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~ 634 (789)
.|... ...|.+.||.+ ..|.+|. |.+|+... .....++++.+.++.+.+.. ...++.++||||||+++..
T Consensus 109 ~~~~l-i~~L~~~GY~~-~~dL~g~---gYDwR~~~---~~~~~~~~Lk~lIe~~~~~~--g~~kV~LVGHSMGGlva~~ 178 (440)
T PLN02733 109 YFHDM-IEQLIKWGYKE-GKTLFGF---GYDFRQSN---RLPETMDGLKKKLETVYKAS--GGKKVNIISHSMGGLLVKC 178 (440)
T ss_pred HHHHH-HHHHHHcCCcc-CCCcccC---CCCccccc---cHHHHHHHHHHHHHHHHHHc--CCCCEEEEEECHhHHHHHH
Confidence 44443 45566699876 5688874 45565431 11234677777777776542 2358999999999999999
Q ss_pred HHHhCCCc----eeEEEecCC
Q 003878 635 CINQRPDL----FGCALAHVG 651 (789)
Q Consensus 635 ~~~~~pd~----f~a~v~~~p 651 (789)
.+.++|+. ++..|+.++
T Consensus 179 fl~~~p~~~~k~I~~~I~la~ 199 (440)
T PLN02733 179 FMSLHSDVFEKYVNSWIAIAA 199 (440)
T ss_pred HHHHCCHhHHhHhccEEEECC
Confidence 99888874 455555544
No 359
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=95.83 E-value=0.77 Score=47.82 Aligned_cols=73 Identities=16% Similarity=0.210 Sum_probs=48.4
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCC-CCeeEEEEEEecCCcEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPE-HPKYIFSGHVTEDGQYLV 315 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~-~~~~~~~~~~SpDG~~l~ 315 (789)
...+.+.|+.-.++.+.. ..+.|++|++.+.. =+.|+.+-+ +...+.++.||+||.+|+
T Consensus 138 INeik~~p~~~qlvls~S------------------kD~svRlwnI~~~~--Cv~VfGG~egHrdeVLSvD~~~~gd~i~ 197 (385)
T KOG1034|consen 138 INEIKFHPDRPQLVLSAS------------------KDHSVRLWNIQTDV--CVAVFGGVEGHRDEVLSVDFSLDGDRIA 197 (385)
T ss_pred chhhhcCCCCCcEEEEec------------------CCceEEEEeccCCe--EEEEecccccccCcEEEEEEcCCCCeee
Confidence 467788898888887732 34569999997653 255665543 344578999999999887
Q ss_pred EEEEcCCCCceEEEEEE
Q 003878 316 MCIEENCDPVNKVYYCD 332 (789)
Q Consensus 316 ~~~~~~~~~~~~i~~~d 332 (789)
-...+. +-.+|.++
T Consensus 198 ScGmDh---slk~W~l~ 211 (385)
T KOG1034|consen 198 SCGMDH---SLKLWRLN 211 (385)
T ss_pred ccCCcc---eEEEEecC
Confidence 544332 33445444
No 360
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.80 E-value=2.7 Score=43.22 Aligned_cols=214 Identities=14% Similarity=0.064 Sum_probs=108.8
Q ss_pred ceEEEEeCC-cEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 238 SSIAWTHDS-KGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 238 ~~~~wspDg-~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
.+++++|-. +.++|.|.+.. -.++++..+.+. .+++.. .....++....+||||++|+.
T Consensus 71 Hgi~~~p~~~ravafARrPGt------------------f~~vfD~~~~~~-pv~~~s-~~~RHfyGHGvfs~dG~~LYA 130 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGT------------------FAMVFDPNGAQE-PVTLVS-QEGRHFYGHGVFSPDGRLLYA 130 (366)
T ss_pred CCeecCCCCcceEEEEecCCc------------------eEEEECCCCCcC-cEEEec-ccCceeecccccCCCCcEEEe
Confidence 456666643 55777765431 145556554433 233332 333455556789999999987
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeee-ccccceeEEEecCCCEEEEEEC--C------------CC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI-DGFDAQYEVIANDDTVFTFLTN--K------------DA 381 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~s~dG~~l~~~tn--~------------~~ 381 (789)
+-++-+....-|=++|...+- +..-... -+.......|.+||+.+++... + +.
T Consensus 131 TEndfd~~rGViGvYd~r~~f------------qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNlds 198 (366)
T COG3490 131 TENDFDPNRGVIGVYDAREGF------------QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDS 198 (366)
T ss_pred ecCCCCCCCceEEEEeccccc------------ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhh
Confidence 765544334556667765421 0000110 1122222358899998876532 0 11
Q ss_pred CCceEEEEECCCCCCe-EEeccCC-CCceeeeEEEecCCEEEEEEEeCCe----EEEEEEECCCCceeeecccCCe----
Q 003878 382 PKYKIIRVDLKEPNDW-FEVIPEA-ERDVLESATAVNLNQMIVSYLSDVK----YVLQIRDLKNGSLLHQLPIEIG---- 451 (789)
Q Consensus 382 ~~~~L~~~dl~~~~~~-~~l~~~~-~~~~i~~v~~~~~~~lv~~~~~~g~----~~L~~~dl~tG~~~~~l~~~~~---- 451 (789)
-.-.|..+|..+++-+ +..+|.. ..-++..+...+++.+++...-.|. +-|.-.-.. |+..+.+..|..
T Consensus 199 MePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~-g~~l~~~~~pee~~~~ 277 (366)
T COG3490 199 MEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRK-GEPLEFLDLPEEQTAA 277 (366)
T ss_pred cCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccC-CCcCcccCCCHHHHHH
Confidence 1235666665555411 2233422 1234566777666777766544432 223322223 555455555411
Q ss_pred ---eEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 452 ---SVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 452 ---~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
.+.+++...+...+.+ +|+ .-+....||.+||.
T Consensus 278 ~anYigsiA~n~~~glV~l--TSP-~GN~~vi~da~tG~ 313 (366)
T COG3490 278 FANYIGSIAANRRDGLVAL--TSP-RGNRAVIWDAATGA 313 (366)
T ss_pred HHhhhhheeecccCCeEEE--ecC-CCCeEEEEEcCCCc
Confidence 2334444444443333 343 33577889999994
No 361
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.79 E-value=1 Score=46.39 Aligned_cols=201 Identities=13% Similarity=0.122 Sum_probs=97.7
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
.++++|.||+++|+.+.. .+..|+..++.... -...-+.. .....++++.-+|++++
T Consensus 24 ~SGLTy~pd~~tLfaV~d------------------~~~~i~els~~G~v-lr~i~l~g---~~D~EgI~y~g~~~~vl- 80 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQD------------------EPGEIYELSLDGKV-LRRIPLDG---FGDYEGITYLGNGRYVL- 80 (248)
T ss_dssp EEEEEEETTTTEEEEEET------------------TTTEEEEEETT--E-EEEEE-SS----SSEEEEEE-STTEEEE-
T ss_pred ccccEEcCCCCeEEEEEC------------------CCCEEEEEcCCCCE-EEEEeCCC---CCCceeEEEECCCEEEE-
Confidence 489999999999987743 23456666653221 11111222 12245788887886665
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc------cceeEEEecCCCEEEEEECCCCCCceEEEEE
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF------DAQYEVIANDDTVFTFLTNKDAPKYKIIRVD 390 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~d 390 (789)
.. ++ ...++++++........ ......+.-+. +.+--.|.+.+++|++...+. + ..|+.++
T Consensus 81 ~~-Er---~~~L~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~-P-~~l~~~~ 147 (248)
T PF06977_consen 81 SE-ER---DQRLYIFTIDDDTTSLD-------RADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERK-P-KRLYEVN 147 (248)
T ss_dssp EE-TT---TTEEEEEEE----TT---------EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESS-S-EEEEEEE
T ss_pred EE-cC---CCcEEEEEEeccccccc-------hhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCC-C-hhhEEEc
Confidence 33 22 35688877744211100 00011111111 112235889889999876553 3 5688888
Q ss_pred C--CCCC-CeEE---ec-cCCCCceeeeEEEec-CCEEEEEEEeCCeEEEEEEECCCCceeeecccCC---------eeE
Q 003878 391 L--KEPN-DWFE---VI-PEAERDVLESATAVN-LNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEI---------GSV 453 (789)
Q Consensus 391 l--~~~~-~~~~---l~-~~~~~~~i~~v~~~~-~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~---------~~v 453 (789)
. .... .... +. ....-..++++++.+ .+++++.+.+.. .|..+|.+ |+.+..+.+.. ...
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~--~l~~~d~~-G~~~~~~~L~~g~~gl~~~~~Qp 224 (248)
T PF06977_consen 148 GFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESR--LLLELDRQ-GRVVSSLSLDRGFHGLSKDIPQP 224 (248)
T ss_dssp STT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTT--EEEEE-TT---EEEEEE-STTGGG-SS---SE
T ss_pred cccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCC--eEEEECCC-CCEEEEEEeCCcccCcccccCCc
Confidence 6 2211 0000 00 011113356777776 367887655543 77888865 77655444432 245
Q ss_pred EEeecccCCcEEEEEEcCCCCCcEEEEE
Q 003878 454 NAISARREDSVVFISFTSFLIPGIVYQC 481 (789)
Q Consensus 454 ~~~s~s~d~~~l~~~~ss~~~P~~ly~~ 481 (789)
.+++++++|+ ++++ ..|...|++
T Consensus 225 EGIa~d~~G~-LYIv----sEpNlfy~f 247 (248)
T PF06977_consen 225 EGIAFDPDGN-LYIV----SEPNLFYRF 247 (248)
T ss_dssp EEEEE-TT---EEEE----ETTTEEEEE
T ss_pred cEEEECCCCC-EEEE----cCCceEEEe
Confidence 6788888875 5554 258888775
No 362
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.76 E-value=0.6 Score=49.32 Aligned_cols=155 Identities=10% Similarity=0.134 Sum_probs=92.1
Q ss_pred EEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecC--CCEEEEEECC
Q 003878 302 IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIAND--DTVFTFLTNK 379 (789)
Q Consensus 302 ~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~d--G~~l~~~tn~ 379 (789)
+.++.. +.++|++... ..||++|+.+-+ .++ -......-......+|++ +.++++-...
T Consensus 90 IL~Vrm--Nr~RLvV~Le------e~IyIydI~~Mk----lLh-------TI~t~~~n~~gl~AlS~n~~n~ylAyp~s~ 150 (391)
T KOG2110|consen 90 ILAVRM--NRKRLVVCLE------ESIYIYDIKDMK----LLH-------TIETTPPNPKGLCALSPNNANCYLAYPGST 150 (391)
T ss_pred eEEEEE--ccceEEEEEc------ccEEEEecccce----eeh-------hhhccCCCccceEeeccCCCCceEEecCCC
Confidence 445554 4566666652 349999998721 100 000110011123345554 3466654333
Q ss_pred CCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC--CeeEEEee
Q 003878 380 DAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE--IGSVNAIS 457 (789)
Q Consensus 380 ~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~--~~~v~~~s 457 (789)
..+.|+++|+.+-.....+-.|. ..+..+++++++.+++..++.| .-|+++...+|+...++--+ ...+.+++
T Consensus 151 --t~GdV~l~d~~nl~~v~~I~aH~--~~lAalafs~~G~llATASeKG-TVIRVf~v~~G~kl~eFRRG~~~~~IySL~ 225 (391)
T KOG2110|consen 151 --TSGDVVLFDTINLQPVNTINAHK--GPLAALAFSPDGTLLATASEKG-TVIRVFSVPEGQKLYEFRRGTYPVSIYSLS 225 (391)
T ss_pred --CCceEEEEEcccceeeeEEEecC--CceeEEEECCCCCEEEEeccCc-eEEEEEEcCCccEeeeeeCCceeeEEEEEE
Confidence 46889999987755233333444 6788899998889999999998 46888888888765544322 33566788
Q ss_pred cccCCcEEEEEEcCCCCCcEEEEEE
Q 003878 458 ARREDSVVFISFTSFLIPGIVYQCN 482 (789)
Q Consensus 458 ~s~d~~~l~~~~ss~~~P~~ly~~d 482 (789)
+++|+..+.. +|-+.--.++.++
T Consensus 226 Fs~ds~~L~~--sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 226 FSPDSQFLAA--SSNTETVHIFKLE 248 (391)
T ss_pred ECCCCCeEEE--ecCCCeEEEEEec
Confidence 9999985544 3434434444444
No 363
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=95.75 E-value=0.017 Score=40.84 Aligned_cols=29 Identities=17% Similarity=0.100 Sum_probs=21.1
Q ss_pred EEeEEeCCCCcEEEEEEecCCceEEEEEE
Q 003878 134 LIKVSVSEDAKYLAYALSYSGSDWATIKL 162 (789)
Q Consensus 134 ~~~~~~SpDg~~la~~~~~~g~~~~~i~v 162 (789)
-..+.|||||++|+|+.+..+....+||+
T Consensus 11 ~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 11 DGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp EEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred ccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 36788999999999999987333566764
No 364
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.74 E-value=0.38 Score=55.27 Aligned_cols=151 Identities=9% Similarity=0.121 Sum_probs=79.3
Q ss_pred EEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCC
Q 003878 304 SGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPK 383 (789)
Q Consensus 304 ~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~ 383 (789)
.++++|||+++++++.+... ...+..++..+. ...-.+. .. ....+.++|+..++ + .
T Consensus 239 ~v~~spdGk~afvTsyNsE~-G~tl~em~a~e~--------------d~~vvfn-i~-~iea~vkdGK~~~V--~----g 295 (635)
T PRK02888 239 NVDTDYDGKYAFSTCYNSEE-GVTLAEMMAAER--------------DWVVVFN-IA-RIEEAVKAGKFKTI--G----G 295 (635)
T ss_pred cceECCCCCEEEEeccCccc-CcceeeeccccC--------------ceEEEEc-hH-HHHHhhhCCCEEEE--C----C
Confidence 57899999999998753321 234555554331 0111111 11 01124568887775 1 2
Q ss_pred ceEEEEECCC----CCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCce------------eeecc
Q 003878 384 YKIIRVDLKE----PNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSL------------LHQLP 447 (789)
Q Consensus 384 ~~L~~~dl~~----~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~------------~~~l~ 447 (789)
.+|.++|..+ +......+|-. ..-.++.+++|++.++... ...+.+.++|+++-+. ..++.
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVG--KsPHGV~vSPDGkylyVan-klS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVP--KNPHGVNTSPDGKYFIANG-KLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECC--CCccceEECCCCCEEEEeC-CCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 5788899877 22233334433 2235677888544333222 2335788889875331 12233
Q ss_pred cCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCC
Q 003878 448 IEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKT 485 (789)
Q Consensus 448 ~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~t 485 (789)
...+-+ ...++.++. .|.|.-.-+.+..||+++
T Consensus 373 vGlGPL-HTaFDg~G~----aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 373 LGLGPL-HTAFDGRGN----AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cCCCcc-eEEECCCCC----EEEeEeecceeEEEehHH
Confidence 322222 234555554 233455566888999865
No 365
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=95.71 E-value=0.5 Score=49.01 Aligned_cols=111 Identities=10% Similarity=0.082 Sum_probs=65.1
Q ss_pred EEecCCCEEEEEECCCCCCceEEEEECCCCC---CeEEeccCCC---CceeeeEEEecC-CEEEEEEEeCCeEEEEEEEC
Q 003878 365 VIANDDTVFTFLTNKDAPKYKIIRVDLKEPN---DWFEVIPEAE---RDVLESATAVNL-NQMIVSYLSDVKYVLQIRDL 437 (789)
Q Consensus 365 ~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~---~~~~l~~~~~---~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl 437 (789)
.|+|||..|+. +.+..|..+|+..+. .....+...+ ...+.-+++++- ..+++...-.. ++-++.-
T Consensus 165 ~Fs~DGeqlfa-----GykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q--~~giy~~ 237 (406)
T KOG2919|consen 165 QFSPDGEQLFA-----GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQ--RVGIYND 237 (406)
T ss_pred EecCCCCeEee-----cccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccc--eeeeEec
Confidence 48999999883 345567777875443 1112222211 234555666663 33444333332 3333343
Q ss_pred CCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCC
Q 003878 438 KNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKT 485 (789)
Q Consensus 438 ~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~t 485 (789)
..+..+..+-...+.|..+.+-+||++++ ++...-..|..||+..
T Consensus 238 ~~~~pl~llggh~gGvThL~~~edGn~lf---sGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 238 DGRRPLQLLGGHGGGVTHLQWCEDGNKLF---SGARKDDKILCWDIRY 282 (406)
T ss_pred CCCCceeeecccCCCeeeEEeccCcCeec---ccccCCCeEEEEeehh
Confidence 33444444443477888899999999765 5667788999999853
No 366
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=95.67 E-value=0.044 Score=63.02 Aligned_cols=69 Identities=16% Similarity=0.200 Sum_probs=51.6
Q ss_pred ccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEE
Q 003878 236 KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLV 315 (789)
Q Consensus 236 ~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~ 315 (789)
+...++||||||+|+....+ ..|+.|++.++.--|.+..+.+ ..++.+||.|.+|+
T Consensus 578 ritd~~FS~DgrWlisasmD-------------------~tIr~wDlpt~~lID~~~vd~~-----~~sls~SPngD~LA 633 (910)
T KOG1539|consen 578 RITDMTFSPDGRWLISASMD-------------------STIRTWDLPTGTLIDGLLVDSP-----CTSLSFSPNGDFLA 633 (910)
T ss_pred ceeeeEeCCCCcEEEEeecC-------------------CcEEEEeccCcceeeeEecCCc-----ceeeEECCCCCEEE
Confidence 45889999999999977544 3599999998876666665543 24689999999998
Q ss_pred EEEEcCCCCceEEEEEE
Q 003878 316 MCIEENCDPVNKVYYCD 332 (789)
Q Consensus 316 ~~~~~~~~~~~~i~~~d 332 (789)
-...+ .+.||++.
T Consensus 634 T~Hvd----~~gIylWs 646 (910)
T KOG1539|consen 634 TVHVD----QNGIYLWS 646 (910)
T ss_pred EEEec----CceEEEEE
Confidence 66543 35688774
No 367
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.63 E-value=0.5 Score=53.32 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=29.5
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccc
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSW 177 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~ 177 (789)
.+..+++-|||..|..+. | ..++++|...|..++ ++.+
T Consensus 14 ci~d~afkPDGsqL~lAA---g---~rlliyD~ndG~llq-tLKg 51 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA---G---SRLLVYDTSDGTLLQ-PLKG 51 (1081)
T ss_pred chheeEECCCCceEEEec---C---CEEEEEeCCCccccc-cccc
Confidence 577899999999998764 2 379999999997664 3444
No 368
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.019 Score=64.71 Aligned_cols=77 Identities=22% Similarity=0.292 Sum_probs=55.3
Q ss_pred EEEEEEcCCCCeeEEEEec-CCCCCceEEeccCCCCCCCc-EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCce
Q 003878 93 YFYFHNTGLQPQSVLYVQD-SLDAKAKVLLDPNTLSDDGT-AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIV 170 (789)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~d~~~~~~~~~-~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~ 170 (789)
..|-|+..... ..++.-. .+....+|+||.|++++++. +..+--+.|||.++|||.....|++.+++ |.++++...
T Consensus 98 vl~~rr~~~~e-~~~~ld~~~~~dd~tV~Ld~~~~aed~~Y~~~gls~~spD~~~ia~~~~~~~~e~~~~-v~~~~~~~~ 175 (712)
T KOG2237|consen 98 VLYCRRLLEKE-EEVFLDPNALGDDGTVLLDTNQIAEDFKYFAYGLSESSPDHKYIAYTKDTEGKELFTV-VIDVKFSGP 175 (712)
T ss_pred hHHHHhhhhcc-cceecCCccCCCCceEEechhhhhhcCCceEEeecccCCCceEEEEEEcCCCCcccee-eeeeccCCc
Confidence 33444443222 2355443 23345679999999999855 55555569999999999999999999999 899888755
Q ss_pred e
Q 003878 171 E 171 (789)
Q Consensus 171 ~ 171 (789)
.
T Consensus 176 ~ 176 (712)
T KOG2237|consen 176 V 176 (712)
T ss_pred e
Confidence 4
No 369
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.60 E-value=2.2 Score=47.38 Aligned_cols=169 Identities=12% Similarity=-0.023 Sum_probs=92.5
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
..+++++||++.+|+.... .....+...+-.+...... ++... .| ...+++|+|++++.
T Consensus 118 P~~~~~~~~~~~vYV~n~~----------------~~~~~vsvid~~t~~~~~~-~~vG~-~P---~~~a~~p~g~~vyv 176 (381)
T COG3391 118 PVGLAVDPDGKYVYVANAG----------------NGNNTVSVIDAATNKVTAT-IPVGN-TP---TGVAVDPDGNKVYV 176 (381)
T ss_pred CceEEECCCCCEEEEEecc----------------cCCceEEEEeCCCCeEEEE-EecCC-Cc---ceEEECCCCCeEEE
Confidence 3689999999999987431 0244566665554322212 22221 23 46889999999887
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND 396 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~ 396 (789)
... ..+.|.++|..+.. ... +........+.......++++|..+|+.-... ....+.++|..++.-
T Consensus 177 ~~~----~~~~v~vi~~~~~~--v~~------~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~-~~~~v~~id~~~~~v 243 (381)
T COG3391 177 TNS----DDNTVSVIDTSGNS--VVR------GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS-GSNNVLKIDTATGNV 243 (381)
T ss_pred Eec----CCCeEEEEeCCCcc--eec------cccccccccCCCCceEEECCCCCEEEEEeccC-CCceEEEEeCCCceE
Confidence 652 25779999976531 000 00000011111112345889999888765432 346899999887651
Q ss_pred eEEeccCCCCceeeeEEEecCC-EEEEEEEeCCeEEEEEEECCCCce
Q 003878 397 WFEVIPEAERDVLESATAVNLN-QMIVSYLSDVKYVLQIRDLKNGSL 442 (789)
Q Consensus 397 ~~~l~~~~~~~~i~~v~~~~~~-~lv~~~~~~g~~~L~~~dl~tG~~ 442 (789)
.....+.... .-.++...+++ .+++.... ...+.++|..+...
T Consensus 244 ~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~--~~~V~vid~~~~~v 287 (381)
T COG3391 244 TATDLPVGSG-APRGVAVDPAGKAAYVANSQ--GGTVSVIDGATDRV 287 (381)
T ss_pred EEeccccccC-CCCceeECCCCCEEEEEecC--CCeEEEEeCCCCce
Confidence 1111222221 23455566643 44443333 35788888775554
No 370
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.58 E-value=1.5 Score=45.68 Aligned_cols=168 Identities=12% Similarity=-0.014 Sum_probs=91.1
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
..++++|+||+.+++.... ....+|+....+.... .+... ..+..+.|+++|...++
T Consensus 26 ~~s~AvS~dg~~~A~v~~~----------------~~~~~L~~~~~~~~~~---~~~~g----~~l~~PS~d~~g~~W~v 82 (253)
T PF10647_consen 26 VTSPAVSPDGSRVAAVSEG----------------DGGRSLYVGPAGGPVR---PVLTG----GSLTRPSWDPDGWVWTV 82 (253)
T ss_pred ccceEECCCCCeEEEEEEc----------------CCCCEEEEEcCCCcce---eeccC----CccccccccCCCCEEEE
Confidence 5789999999999998721 2334677776654322 22221 13567899999654444
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeee-ccc--cceeEEEecCCCEEEEEECCCCCCceEEEEECCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI-DGF--DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKE 393 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~-~~~--~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~ 393 (789)
.. .. ....+.. +..++. .. ...+. ... ...-..+||||.+++++...++ ..+|++.-+..
T Consensus 83 ~~--~~-~~~~~~~-~~~~g~-----------~~-~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~-~~~v~va~V~r 145 (253)
T PF10647_consen 83 DD--GS-GGVRVVR-DSASGT-----------GE-PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGG-GGRVYVAGVVR 145 (253)
T ss_pred Ec--CC-CceEEEE-ecCCCc-----------ce-eEEecccccCCceEEEEECCCCcEEEEEEecCC-CCeEEEEEEEe
Confidence 33 21 1222222 322221 01 11111 111 1112348999999998886543 46787775432
Q ss_pred ---C--C---CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeec
Q 003878 394 ---P--N---DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQL 446 (789)
Q Consensus 394 ---~--~---~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l 446 (789)
+ . ....+.+.. ...+.++.|..++.|++.....+......+..+ |.....+
T Consensus 146 ~~~g~~~~l~~~~~~~~~~-~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~d-G~~~~~l 204 (253)
T PF10647_consen 146 DGDGVPRRLTGPRRVAPPL-LSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVD-GGPSTPL 204 (253)
T ss_pred CCCCCcceeccceEecccc-cCcceeeeecCCCEEEEEeCCCCCceeEEEEcc-CCccccc
Confidence 2 1 122333221 245678999987888887777665433346665 4332444
No 371
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=95.53 E-value=0.068 Score=52.47 Aligned_cols=107 Identities=13% Similarity=0.165 Sum_probs=73.4
Q ss_pred cEEEEEcCCCCccCC-CCCCHHHHHHHHcCCeEEEEEeecCCC-CCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCC
Q 003878 539 PCLLYGYGGFNISVT-PSFSVSRTILMRHLGAVFCIANIRGGG-EYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQ 616 (789)
Q Consensus 539 P~ll~~hGg~~~~~~-~~~~~~~~~~l~~~G~~v~~~~~RG~g-~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d 616 (789)
-.|||+ ||-+.... -.|-......|.+.+|..+++..|.+- +||.- .-..+.+|+..++++++-.++.
T Consensus 37 ~~vvfi-GGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~--------slk~D~edl~~l~~Hi~~~~fS- 106 (299)
T KOG4840|consen 37 VKVVFI-GGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNGYGTF--------SLKDDVEDLKCLLEHIQLCGFS- 106 (299)
T ss_pred EEEEEE-cccCCCccccccHHHHHHHHhhccceeeeeeccccccccccc--------cccccHHHHHHHHHHhhccCcc-
Confidence 344444 55444332 233334556677799999999988653 24421 1234568999999988877654
Q ss_pred CCcEEEEeeChHHHHHHHHHHh--CCCceeEEEecCCccccc
Q 003878 617 SRKLCIEGGSNGGLLVGACINQ--RPDLFGCALAHVGVMDML 656 (789)
Q Consensus 617 ~~~i~i~G~S~GG~l~~~~~~~--~pd~f~a~v~~~p~~d~~ 656 (789)
..|+++|||-|--=++..+++ .|....|+|+++|+.|-.
T Consensus 107 -t~vVL~GhSTGcQdi~yYlTnt~~~r~iraaIlqApVSDrE 147 (299)
T KOG4840|consen 107 -TDVVLVGHSTGCQDIMYYLTNTTKDRKIRAAILQAPVSDRE 147 (299)
T ss_pred -cceEEEecCccchHHHHHHHhccchHHHHHHHHhCccchhh
Confidence 389999999998777777644 256789999999999965
No 372
>KOG4328 consensus WD40 protein [Function unknown]
Probab=95.49 E-value=2.6 Score=45.92 Aligned_cols=249 Identities=18% Similarity=0.180 Sum_probs=131.5
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
..|+.+.+||-..--.|+.++.| +|+++|++++.... +-
T Consensus 235 ~~Vs~l~F~P~n~s~i~ssSyDG----tiR~~D~~~~i~e~--v~----------------------------------- 273 (498)
T KOG4328|consen 235 GPVSGLKFSPANTSQIYSSSYDG----TIRLQDFEGNISEE--VL----------------------------------- 273 (498)
T ss_pred ccccceEecCCChhheeeeccCc----eeeeeeecchhhHH--Hh-----------------------------------
Confidence 35788899998888889998888 79999999873211 00
Q ss_pred eeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEE
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL 291 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~ 291 (789)
++| +.++| +.+..++.+...+++...- . .+-.+++.++.++-..
T Consensus 274 -------s~~---~d~~~-------fs~~d~~~e~~~vl~~~~~-----------------G--~f~~iD~R~~~s~~~~ 317 (498)
T KOG4328|consen 274 -------SLD---TDNIW-------FSSLDFSAESRSVLFGDNV-----------------G--NFNVIDLRTDGSEYEN 317 (498)
T ss_pred -------hcC---cccee-------eeeccccCCCccEEEeecc-----------------c--ceEEEEeecCCccchh
Confidence 000 11112 4566677777777665321 1 2344555555443111
Q ss_pred EEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccc-eeEEEecCC
Q 003878 292 CWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA-QYEVIANDD 370 (789)
Q Consensus 292 ~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~s~dG 370 (789)
+ .-+..-+.++++.|-..+++++++.. ....+||+.....+ ..|+......... .-++|||.|
T Consensus 318 ~---~lh~kKI~sv~~NP~~p~~laT~s~D----~T~kIWD~R~l~~K---------~sp~lst~~HrrsV~sAyFSPs~ 381 (498)
T KOG4328|consen 318 L---RLHKKKITSVALNPVCPWFLATASLD----QTAKIWDLRQLRGK---------ASPFLSTLPHRRSVNSAYFSPSG 381 (498)
T ss_pred h---hhhhcccceeecCCCCchheeecccC----cceeeeehhhhcCC---------CCcceecccccceeeeeEEcCCC
Confidence 1 11223467889999999988877532 33566787653100 1122222222221 224599988
Q ss_pred CEEEEEECCCCCCceEEEEECC---CCCCeEEeccCCCC--c--eeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCcee
Q 003878 371 TVFTFLTNKDAPKYKIIRVDLK---EPNDWFEVIPEAER--D--VLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLL 443 (789)
Q Consensus 371 ~~l~~~tn~~~~~~~L~~~dl~---~~~~~~~l~~~~~~--~--~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~ 443 (789)
..|+ .|.. +..|-++|.. ........++|... . ......|.++..++++.+-- ..|-++|...|+.+
T Consensus 382 gtl~-TT~~---D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~--r~IDv~~~~~~q~v 455 (498)
T KOG4328|consen 382 GTLL-TTCQ---DNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYP--RPIDVFDGNGGQMV 455 (498)
T ss_pred CceE-eecc---CCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccC--cceeEEcCCCCEEe
Confidence 8843 3333 2456666653 11112334455421 1 12234677755555555432 35888888755534
Q ss_pred eecccC-CeeEEEe-ecccCCcEEEEEEcCCCCCcEEEEEE
Q 003878 444 HQLPIE-IGSVNAI-SARREDSVVFISFTSFLIPGIVYQCN 482 (789)
Q Consensus 444 ~~l~~~-~~~v~~~-s~s~d~~~l~~~~ss~~~P~~ly~~d 482 (789)
-++..| ..+|..+ .+.|-...++ ++.+.-+.+|++-
T Consensus 456 ~el~~P~~~tI~~vn~~HP~~~~~~---aG~~s~Gki~vft 493 (498)
T KOG4328|consen 456 CELHDPESSTIPSVNEFHPMRDTLA---AGGNSSGKIYVFT 493 (498)
T ss_pred eeccCccccccccceeeccccccee---ccCCccceEEEEe
Confidence 455545 2233222 3445444232 2445556666654
No 373
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=95.44 E-value=0.68 Score=48.24 Aligned_cols=126 Identities=10% Similarity=0.033 Sum_probs=71.5
Q ss_pred ecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCc---cCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcc
Q 003878 514 PSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNI---SVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGG 590 (789)
Q Consensus 514 ~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~---~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~ 590 (789)
+++-| .|.+.+.-. ++++.|+||..|--.-. ....-|.....+.+. ..+.++-+|..|..+-....-
T Consensus 5 ~t~~G--~v~V~v~G~----~~~~kp~ilT~HDvGlNh~scF~~ff~~~~m~~i~-~~f~i~Hi~aPGqe~ga~~~p--- 74 (283)
T PF03096_consen 5 ETPYG--SVHVTVQGD----PKGNKPAILTYHDVGLNHKSCFQGFFNFEDMQEIL-QNFCIYHIDAPGQEEGAATLP--- 74 (283)
T ss_dssp EETTE--EEEEEEESS------TTS-EEEEE--TT--HHHHCHHHHCSHHHHHHH-TTSEEEEEE-TTTSTT--------
T ss_pred ccCce--EEEEEEEec----CCCCCceEEEeccccccchHHHHHHhcchhHHHHh-hceEEEEEeCCCCCCCccccc---
Confidence 33445 566655522 23478999999984211 122333334456666 789999999998765222211
Q ss_pred cccCCcchHHHHHHHHHHHHHc-CCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcc
Q 003878 591 ALAKKQNCFDDFISASEYLISA-GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 653 (789)
Q Consensus 591 ~~~~~~~~~~D~~~~~~~L~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~ 653 (789)
....-.+++++.+.+..+.+. +. +.+..+|--+|+++-...|..+|++.-+.|+..|..
T Consensus 75 -~~y~yPsmd~LAe~l~~Vl~~f~l---k~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~ 134 (283)
T PF03096_consen 75 -EGYQYPSMDQLAEMLPEVLDHFGL---KSVIGFGVGAGANILARFALKHPERVLGLILVNPTC 134 (283)
T ss_dssp -TT-----HHHHHCTHHHHHHHHT------EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---
T ss_pred -ccccccCHHHHHHHHHHHHHhCCc---cEEEEEeeccchhhhhhccccCccceeEEEEEecCC
Confidence 122334566665555555544 32 479999999999999999999999999999887644
No 374
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=95.43 E-value=3.6 Score=44.89 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=27.2
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCcee
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVE 171 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~ 171 (789)
+...+.++.+|||++++ |..+..| +|--|++.+|...
T Consensus 141 H~~s~~~vals~d~~~~-fsask~g----~i~kw~v~tgk~~ 177 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDKRV-FSASKDG----TILKWDVLTGKKD 177 (479)
T ss_pred ccCcceEEEeeccccce-eecCCCc----ceeeeehhcCccc
Confidence 34567889999999987 4444333 8989999999643
No 375
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.40 E-value=5.6 Score=44.08 Aligned_cols=204 Identities=11% Similarity=0.038 Sum_probs=115.6
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
.+++.+++++.+|....+ ...+...+..+.......... . .-..++++|||+++++.
T Consensus 77 ~~i~v~~~~~~vyv~~~~------------------~~~v~vid~~~~~~~~~~~vG--~---~P~~~~~~~~~~~vYV~ 133 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGD------------------SNTVSVIDTATNTVLGSIPVG--L---GPVGLAVDPDGKYVYVA 133 (381)
T ss_pred cceeeCCCCCeEEEecCC------------------CCeEEEEcCcccceeeEeeec--c---CCceEEECCCCCEEEEE
Confidence 567788899988876432 233555554332211111111 1 12367899999999877
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCe
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDW 397 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~ 397 (789)
-... ..+.+.++|..+.. .......+.......++|+|..+|+.. .....|..+|.++...+
T Consensus 134 n~~~--~~~~vsvid~~t~~-------------~~~~~~vG~~P~~~a~~p~g~~vyv~~---~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 134 NAGN--GNNTVSVIDAATNK-------------VTATIPVGNTPTGVAVDPDGNKVYVTN---SDDNTVSVIDTSGNSVV 195 (381)
T ss_pred eccc--CCceEEEEeCCCCe-------------EEEEEecCCCcceEEECCCCCeEEEEe---cCCCeEEEEeCCCccee
Confidence 6432 25778999987742 111222222222345889999888654 34578999997665411
Q ss_pred E-E---eccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECCCCceeee-cccCCeeEEEeecccCCcEEEEEEcC
Q 003878 398 F-E---VIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQ-LPIEIGSVNAISARREDSVVFISFTS 471 (789)
Q Consensus 398 ~-~---l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~~~~~-l~~~~~~v~~~s~s~d~~~l~~~~ss 471 (789)
+ . .++.. ..-..+.+.++ .++++....+....+..+|..++..... +......-..+..+|+++.+++....
T Consensus 196 ~~~~~~~~~~~--~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~ 273 (381)
T COG3391 196 RGSVGSLVGVG--TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ 273 (381)
T ss_pred ccccccccccC--CCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC
Confidence 1 0 11111 11134556554 4466655554335788899887765322 22222122345678999987765443
Q ss_pred CCCCcEEEEEECCCCC
Q 003878 472 FLIPGIVYQCNLKTET 487 (789)
Q Consensus 472 ~~~P~~ly~~dl~tg~ 487 (789)
...++..|..+..
T Consensus 274 ---~~~V~vid~~~~~ 286 (381)
T COG3391 274 ---GGTVSVIDGATDR 286 (381)
T ss_pred ---CCeEEEEeCCCCc
Confidence 7899999987763
No 376
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=95.35 E-value=0.079 Score=60.22 Aligned_cols=131 Identities=18% Similarity=0.174 Sum_probs=88.7
Q ss_pred eEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCH-HHHHHHHcCCeEEEEEeecCCCCC----ChhHHh--cccc
Q 003878 520 TKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSV-SRTILMRHLGAVFCIANIRGGGEY----GEEWHK--GGAL 592 (789)
Q Consensus 520 ~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~-~~~~~l~~~G~~v~~~~~RG~g~~----g~~~~~--~~~~ 592 (789)
..|...+.+|.+. ++ ..+..+-||+.......-.. ....-+. +||+++.-|- |.... ...|.. ....
T Consensus 15 ~~i~fev~LP~~W--Ng--R~~~~GgGG~~G~i~~~~~~~~~~~~~~-~G~A~~~TD~-Gh~~~~~~~~~~~~~n~~~~~ 88 (474)
T PF07519_consen 15 PNIRFEVWLPDNW--NG--RFLQVGGGGFAGGINYADGKASMATALA-RGYATASTDS-GHQGSAGSDDASFGNNPEALL 88 (474)
T ss_pred ceEEEEEECChhh--cc--CeEEECCCeeeCcccccccccccchhhh-cCeEEEEecC-CCCCCcccccccccCCHHHHH
Confidence 4788888889865 23 46667767765444333210 0233455 9999999883 22111 112221 1112
Q ss_pred cCCcchHHHHHHHHHHHHHcCC-CCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccc
Q 003878 593 AKKQNCFDDFISASEYLISAGY-TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDML 656 (789)
Q Consensus 593 ~~~~~~~~D~~~~~~~L~~~~~-~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~ 656 (789)
++......+...+.+.|++.-| ..|++-...|.|.||-..+.+|-++|+.|.++|+.+|..++.
T Consensus 89 dfa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~AQryP~dfDGIlAgaPA~~~~ 153 (474)
T PF07519_consen 89 DFAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGLMAAQRYPEDFDGILAGAPAINWT 153 (474)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHHHHHHhChhhcCeEEeCCchHHHH
Confidence 3444556777778888888855 477999999999999999999999999999999999976653
No 377
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=95.34 E-value=0.79 Score=46.61 Aligned_cols=102 Identities=11% Similarity=-0.020 Sum_probs=63.8
Q ss_pred EEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCH-HHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHH
Q 003878 524 MFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSV-SRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDF 602 (789)
Q Consensus 524 ~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~-~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~ 602 (789)
.|+..|+. .-.||++-||......|.-.. ..+..|.++||+|++.-|.-+-.. +.. .......+
T Consensus 8 ~wvl~P~~------P~gvihFiGGaf~ga~P~itYr~lLe~La~~Gy~ViAtPy~~tfDH---~~~------A~~~~~~f 72 (250)
T PF07082_consen 8 SWVLIPPR------PKGVIHFIGGAFVGAAPQITYRYLLERLADRGYAVIATPYVVTFDH---QAI------AREVWERF 72 (250)
T ss_pred cEEEeCCC------CCEEEEEcCcceeccCcHHHHHHHHHHHHhCCcEEEEEecCCCCcH---HHH------HHHHHHHH
Confidence 36666652 236777778754444444322 235555569999999888643221 111 12335567
Q ss_pred HHHHHHHHHcCCCCCC--cEEEEeeChHHHHHHHHHHhCC
Q 003878 603 ISASEYLISAGYTQSR--KLCIEGGSNGGLLVGACINQRP 640 (789)
Q Consensus 603 ~~~~~~L~~~~~~d~~--~i~i~G~S~GG~l~~~~~~~~p 640 (789)
..|++.|.+++..++. .+.-+|||+|..+-+.+....+
T Consensus 73 ~~~~~~L~~~~~~~~~~lP~~~vGHSlGcklhlLi~s~~~ 112 (250)
T PF07082_consen 73 ERCLRALQKRGGLDPAYLPVYGVGHSLGCKLHLLIGSLFD 112 (250)
T ss_pred HHHHHHHHHhcCCCcccCCeeeeecccchHHHHHHhhhcc
Confidence 7788888877644444 5778999999988877766543
No 378
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=95.27 E-value=0.11 Score=57.45 Aligned_cols=117 Identities=16% Similarity=0.089 Sum_probs=80.6
Q ss_pred CCccEEEEEcCCCCccCCC-CC-CHHHHHHHHcCCeEEEEEeecCCCCC---ChhHHhcccccCCcchHHHHHHHHHHHH
Q 003878 536 GSHPCLLYGYGGFNISVTP-SF-SVSRTILMRHLGAVFCIANIRGGGEY---GEEWHKGGALAKKQNCFDDFISASEYLI 610 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~-~~-~~~~~~~l~~~G~~v~~~~~RG~g~~---g~~~~~~~~~~~~~~~~~D~~~~~~~L~ 610 (789)
...|++|++-|-.-....+ .. ...+..|..+.|..|+....|=-|.. +..-....+...-.....|+...++.+-
T Consensus 84 ~~gPiFLmIGGEgp~~~~wv~~~~~~~~~~AkkfgA~v~~lEHRFYG~S~P~~~~st~nlk~LSs~QALaDla~fI~~~n 163 (514)
T KOG2182|consen 84 PGGPIFLMIGGEGPESDKWVGNENLTWLQWAKKFGATVFQLEHRFYGQSSPIGDLSTSNLKYLSSLQALADLAEFIKAMN 163 (514)
T ss_pred CCCceEEEEcCCCCCCCCccccCcchHHHHHHHhCCeeEEeeeeccccCCCCCCCcccchhhhhHHHHHHHHHHHHHHHH
Confidence 4568999997743222222 11 23467888899999999999954421 1111111112222345788888888887
Q ss_pred Hc-CCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 611 SA-GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 611 ~~-~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
.+ +.-++.+.+..|+|+-|.|++++=..+||+..++|+.++.
T Consensus 164 ~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSap 206 (514)
T KOG2182|consen 164 AKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAP 206 (514)
T ss_pred hhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeecccccc
Confidence 66 4667779999999999999999999999998888876543
No 379
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.26 E-value=0.49 Score=54.41 Aligned_cols=149 Identities=12% Similarity=0.111 Sum_probs=97.4
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceec------ccccccccccccCccceeeeeeccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA------DALSWVCFCFSHSFGYFFHLTISLLNVPTYK 203 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 203 (789)
+.-++..+.|++-.-.++. +|+....|++||+....... +.+..+.+ .|..
T Consensus 132 H~Rs~~~ldfh~tep~ili----SGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~f------------------sp~~- 188 (839)
T KOG0269|consen 132 HERSANKLDFHSTEPNILI----SGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKF------------------SPGY- 188 (839)
T ss_pred hccceeeeeeccCCccEEE----ecCCCceEEEEeeecccccccccccchhhhceee------------------ccCC-
Confidence 3446778888888777775 46666799999998874332 22223311 1111
Q ss_pred cccccccceeeEEEeeeccccceeeeeeec------ccc-----cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCC
Q 003878 204 LFLYLRGIFFFFYLFSLVKSTIYSFWSVVS------QFK-----FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSN 272 (789)
Q Consensus 204 ~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~------~~~-----~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~ 272 (789)
-...++.+++|+-|+|.+-. ++. +.-..|+|++.+|+- .+
T Consensus 189 ----------~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lAT-------------------GG 239 (839)
T KOG0269|consen 189 ----------GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLAT-------------------GG 239 (839)
T ss_pred ----------CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeee-------------------cC
Confidence 12355678999999999866 222 245689998877763 34
Q ss_pred cccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCC
Q 003878 273 LYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSA 335 (789)
Q Consensus 273 ~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~ 335 (789)
|..++.+|+.++.......+.+... + +..+.|-|+.++.+.+++... ...|+++|+.-
T Consensus 240 RDK~vkiWd~t~~~~~~~~tInTia-p--v~rVkWRP~~~~hLAtcsmv~--dtsV~VWDvrR 297 (839)
T KOG0269|consen 240 RDKMVKIWDMTDSRAKPKHTINTIA-P--VGRVKWRPARSYHLATCSMVV--DTSVHVWDVRR 297 (839)
T ss_pred CCccEEEEeccCCCccceeEEeecc-e--eeeeeeccCccchhhhhhccc--cceEEEEeecc
Confidence 6677999999876655444433211 2 456899999998776665444 46799999865
No 380
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.26 E-value=3.3 Score=42.67 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=34.2
Q ss_pred CCceEEeccCCC-------CCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCC
Q 003878 115 AKAKVLLDPNTL-------SDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQ 168 (789)
Q Consensus 115 ~~~~~l~d~~~~-------~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg 168 (789)
|..-.++|++.- +..+..-.+.-.+||||.+|.-+-+.-...+..|-|+|...+
T Consensus 90 Gtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 90 GTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 445567777763 223334456677999999874443322344678999998755
No 381
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=95.26 E-value=0.036 Score=48.98 Aligned_cols=59 Identities=19% Similarity=0.076 Sum_probs=45.3
Q ss_pred CCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHH
Q 003878 706 YPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780 (789)
Q Consensus 706 ~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 780 (789)
.+|+|++.++.|+..|+..+.++.++|... .+++.++.||+.....+. -..+.+.+||.
T Consensus 34 ~~piL~l~~~~Dp~TP~~~a~~~~~~l~~s--------------~lvt~~g~gHg~~~~~s~--C~~~~v~~yl~ 92 (103)
T PF08386_consen 34 APPILVLGGTHDPVTPYEGARAMAARLPGS--------------RLVTVDGAGHGVYAGGSP--CVDKAVDDYLL 92 (103)
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHCCCc--------------eEEEEeccCcceecCCCh--HHHHHHHHHHH
Confidence 489999999999999999999999888643 678888999997643332 22345667775
No 382
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=95.24 E-value=1.2 Score=49.68 Aligned_cols=194 Identities=14% Similarity=0.109 Sum_probs=105.2
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
..+.-||||+++.-+ ..+..+|.++++..- .+-|+..-+..-+.-.-+|.|=..++|.
T Consensus 55 t~ik~s~DGqY~lAt------------------G~YKP~ikvydlanL----SLKFERhlDae~V~feiLsDD~SK~v~L 112 (703)
T KOG2321|consen 55 TRIKVSPDGQYLLAT------------------GTYKPQIKVYDLANL----SLKFERHLDAEVVDFEILSDDYSKSVFL 112 (703)
T ss_pred ceeEecCCCcEEEEe------------------cccCCceEEEEcccc----eeeeeecccccceeEEEeccchhhheEe
Confidence 678899999999866 345566887777532 1233332211111112345566666665
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeee--ccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI--DGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
..++. -+ +....| .-....+ .+++..|..++- .||+. +....||+++|+.|.
T Consensus 113 ~~DR~---Ie---fHak~G-------------~hy~~RIP~~GRDm~y~~~sc---Dly~~----gsg~evYRlNLEqGr 166 (703)
T KOG2321|consen 113 QNDRT---IE---FHAKYG-------------RHYRTRIPKFGRDMKYHKPSC---DLYLV----GSGSEVYRLNLEQGR 166 (703)
T ss_pred ecCce---ee---ehhhcC-------------eeeeeecCcCCccccccCCCc---cEEEe----ecCcceEEEEccccc
Confidence 54432 11 111111 0011111 133333433332 35543 234679999999886
Q ss_pred CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC------Ce-----eEEEeecccCCcE
Q 003878 396 DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE------IG-----SVNAISARREDSV 464 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~------~~-----~v~~~s~s~d~~~ 464 (789)
-+.++-... .-+..+.+.+-+.|++.+..+| .+-.||..+...+..|..+ .+ +|++++++.++=.
T Consensus 167 fL~P~~~~~--~~lN~v~in~~hgLla~Gt~~g--~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~ 242 (703)
T KOG2321|consen 167 FLNPFETDS--GELNVVSINEEHGLLACGTEDG--VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLH 242 (703)
T ss_pred ccccccccc--ccceeeeecCccceEEecccCc--eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCcee
Confidence 223332222 2345566666578888888777 6788888755443444321 12 3666777766655
Q ss_pred EEEEEcCCCCCcEEEEEECCCCC
Q 003878 465 VFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 465 l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
+.+. +.-+.+|.||+.+.+
T Consensus 243 ~aVG----ts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 243 VAVG----TSTGSVLIYDLRASK 261 (703)
T ss_pred EEee----ccCCcEEEEEcccCC
Confidence 5554 345789999998763
No 383
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.17 E-value=4.6 Score=41.70 Aligned_cols=210 Identities=10% Similarity=0.031 Sum_probs=99.9
Q ss_pred EEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccccee
Q 003878 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFF 213 (789)
Q Consensus 134 ~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 213 (789)
++++++.||.+.|+.+.+..+ .|+..+++ |+++. .+.-. | ++
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~~----~i~els~~-G~vlr-~i~l~-g-----~~-------------------------- 65 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEPG----EIYELSLD-GKVLR-RIPLD-G-----FG-------------------------- 65 (248)
T ss_dssp EEEEEEETTTTEEEEEETTTT----EEEEEETT---EEE-EEE-S-S------S--------------------------
T ss_pred ccccEEcCCCCeEEEEECCCC----EEEEEcCC-CCEEE-EEeCC-C-----CC--------------------------
Confidence 789999999998876666544 68888975 55553 22211 0 01
Q ss_pred eEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCC----c
Q 003878 214 FFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSE----D 289 (789)
Q Consensus 214 ~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~----~ 289 (789)
+..++++.-+++ ++.+ ..+..+++.+.++..... +
T Consensus 66 ----------------------D~EgI~y~g~~~-~vl~------------------~Er~~~L~~~~~~~~~~~~~~~~ 104 (248)
T PF06977_consen 66 ----------------------DYEGITYLGNGR-YVLS------------------EERDQRLYIFTIDDDTTSLDRAD 104 (248)
T ss_dssp ----------------------SEEEEEE-STTE-EEEE------------------ETTTTEEEEEEE----TT--EEE
T ss_pred ----------------------CceeEEEECCCE-EEEE------------------EcCCCcEEEEEEeccccccchhh
Confidence 356888876653 3333 224456777777432211 1
Q ss_pred EE--EEecC-CCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEe-eeccccceeEE
Q 003878 290 IL--CWKDP-EHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVK-LIDGFDAQYEV 365 (789)
Q Consensus 290 ~~--~~~~~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~ 365 (789)
.. -...+ .+..-+.+++|+|.++.|++...+. -..||-++............ ...+.. ...-.+..-..
T Consensus 105 ~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~---P~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~d~S~l~ 177 (248)
T PF06977_consen 105 VQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERK---PKRLYEVNGFPGGFDLFVSD----DQDLDDDKLFVRDLSGLS 177 (248)
T ss_dssp EEEEE---S---SS--EEEEEETTTTEEEEEEESS---SEEEEEEESTT-SS--EEEE-----HHHH-HT--SS---EEE
T ss_pred ceEEecccccCCCcceEEEEEcCCCCEEEEEeCCC---ChhhEEEccccCccceeecc----ccccccccceeccccceE
Confidence 11 11111 1123367899999999988775432 35678777622110000000 000000 00011112223
Q ss_pred EecCCCEEEEEECCCCCCceEEEEECCCCC-CeEEeccCC-----CCceeeeEEEecCCEEEEEEEeCCeEEEEEE
Q 003878 366 IANDDTVFTFLTNKDAPKYKIIRVDLKEPN-DWFEVIPEA-----ERDVLESATAVNLNQMIVSYLSDVKYVLQIR 435 (789)
Q Consensus 366 ~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~-~~~~l~~~~-----~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~ 435 (789)
+.|...+||+++... ..|+.+|.++.- ....|.... .-..-+++++.+++.||++...| ..|++
T Consensus 178 ~~p~t~~lliLS~es---~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpN---lfy~f 247 (248)
T PF06977_consen 178 YDPRTGHLLILSDES---RLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPN---LFYRF 247 (248)
T ss_dssp EETTTTEEEEEETTT---TEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTT---EEEEE
T ss_pred EcCCCCeEEEEECCC---CeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCc---eEEEe
Confidence 677788999998764 578888855431 122232211 01235789998877777766433 45554
No 384
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=95.15 E-value=0.066 Score=54.07 Aligned_cols=89 Identities=15% Similarity=0.086 Sum_probs=45.0
Q ss_pred EEEEcCCCCccCCCCCCHHHHHHHHcCCeE---EEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCC
Q 003878 541 LLYGYGGFNISVTPSFSVSRTILMRHLGAV---FCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 617 (789)
Q Consensus 541 ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~---v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~ 617 (789)
||++||-.+. ....|......|. ++||. +...+|-...... ...... ........+.+.++.+.+. +-.
T Consensus 4 VVlVHG~~~~-~~~~w~~~~~~l~-~~GY~~~~vya~tyg~~~~~~--~~~~~~--~~~~~~~~l~~fI~~Vl~~--TGa 75 (219)
T PF01674_consen 4 VVLVHGTGGN-AYSNWSTLAPYLK-AAGYCDSEVYALTYGSGNGSP--SVQNAH--MSCESAKQLRAFIDAVLAY--TGA 75 (219)
T ss_dssp EEEE--TTTT-TCGGCCHHHHHHH-HTT--CCCEEEE--S-CCHHT--HHHHHH--B-HHHHHHHHHHHHHHHHH--HT-
T ss_pred EEEECCCCcc-hhhCHHHHHHHHH-HcCCCcceeEeccCCCCCCCC--cccccc--cchhhHHHHHHHHHHHHHh--hCC
Confidence 6788996542 3345555444444 59999 7888884332211 111100 1112234555555555543 556
Q ss_pred CcEEEEeeChHHHHHHHHHHh
Q 003878 618 RKLCIEGGSNGGLLVGACINQ 638 (789)
Q Consensus 618 ~~i~i~G~S~GG~l~~~~~~~ 638 (789)
+|-|+|||+||.++-.++..
T Consensus 76 -kVDIVgHS~G~~iaR~yi~~ 95 (219)
T PF01674_consen 76 -KVDIVGHSMGGTIARYYIKG 95 (219)
T ss_dssp --EEEEEETCHHHHHHHHHHH
T ss_pred -EEEEEEcCCcCHHHHHHHHH
Confidence 99999999999998887753
No 385
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=95.11 E-value=0.22 Score=52.35 Aligned_cols=158 Identities=11% Similarity=0.131 Sum_probs=92.4
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccce
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIF 212 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 212 (789)
.+..+.++|--.-|+-+ +.....|.++|+.++.++...+..+
T Consensus 189 ti~svkfNpvETsILas----~~sDrsIvLyD~R~~~Pl~KVi~~m---------------------------------- 230 (433)
T KOG0268|consen 189 SISSVKFNPVETSILAS----CASDRSIVLYDLRQASPLKKVILTM---------------------------------- 230 (433)
T ss_pred ceeEEecCCCcchheee----eccCCceEEEecccCCccceeeeec----------------------------------
Confidence 35566677765554432 2234579999999998776554444
Q ss_pred eeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEE
Q 003878 213 FFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILC 292 (789)
Q Consensus 213 ~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~ 292 (789)
+...++|+| ..+.|+. .+..+.+|.+++.-- .+.+-+
T Consensus 231 -----------------------RTN~IswnP--eafnF~~-----------------a~ED~nlY~~DmR~l-~~p~~v 267 (433)
T KOG0268|consen 231 -----------------------RTNTICWNP--EAFNFVA-----------------ANEDHNLYTYDMRNL-SRPLNV 267 (433)
T ss_pred -----------------------cccceecCc--cccceee-----------------ccccccceehhhhhh-cccchh
Confidence 458899999 3444443 234566888887532 223334
Q ss_pred EecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee-EEEecCCC
Q 003878 293 WKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIANDDT 371 (789)
Q Consensus 293 ~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dG~ 371 (789)
+. ++...+.++.+||-|+-++-.+.+. .|.++.+..+... . .-.+..-.... ..||.|.+
T Consensus 268 ~~--dhvsAV~dVdfsptG~EfvsgsyDk-----sIRIf~~~~~~SR---------d---iYhtkRMq~V~~Vk~S~Dsk 328 (433)
T KOG0268|consen 268 HK--DHVSAVMDVDFSPTGQEFVSGSYDK-----SIRIFPVNHGHSR---------D---IYHTKRMQHVFCVKYSMDSK 328 (433)
T ss_pred hc--ccceeEEEeccCCCcchhccccccc-----eEEEeecCCCcch---------h---hhhHhhhheeeEEEEecccc
Confidence 43 3345577899999999988766543 3666666554211 0 00011111122 23898887
Q ss_pred EEEEEECCCCCCceEEEEECC
Q 003878 372 VFTFLTNKDAPKYKIIRVDLK 392 (789)
Q Consensus 372 ~l~~~tn~~~~~~~L~~~dl~ 392 (789)
+++ +..+..|.+|++....
T Consensus 329 yi~--SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 329 YII--SGSDDGNVRLWKAKAS 347 (433)
T ss_pred EEE--ecCCCcceeeeecchh
Confidence 554 3333457788876643
No 386
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=95.09 E-value=1.5 Score=50.11 Aligned_cols=110 Identities=12% Similarity=0.162 Sum_probs=64.7
Q ss_pred EEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc---cee--EEEecCCCEEEEE
Q 003878 302 IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD---AQY--EVIANDDTVFTFL 376 (789)
Q Consensus 302 ~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~---~~~--~~~s~dG~~l~~~ 376 (789)
+...+..|..++++....++ .|.+++++.|+. .+.+++.. ... ....|.| +|+.
T Consensus 599 lYDm~Vdp~~k~v~t~cQDr-----nirif~i~sgKq--------------~k~FKgs~~~eG~lIKv~lDPSg--iY~a 657 (1080)
T KOG1408|consen 599 LYDMAVDPTSKLVVTVCQDR-----NIRIFDIESGKQ--------------VKSFKGSRDHEGDLIKVILDPSG--IYLA 657 (1080)
T ss_pred EEEeeeCCCcceEEEEeccc-----ceEEEeccccce--------------eeeecccccCCCceEEEEECCCc--cEEE
Confidence 34677889999998877543 377889888641 22232211 111 1244544 4544
Q ss_pred ECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECC
Q 003878 377 TNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLK 438 (789)
Q Consensus 377 tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~ 438 (789)
+.- .+-.|..+|.-+++-....+.|. ..+.++-+.+|=+-+++...|| =|++|.+.
T Consensus 658 tSc--sdktl~~~Df~sgEcvA~m~GHs--E~VTG~kF~nDCkHlISvsgDg--CIFvW~lp 713 (1080)
T KOG1408|consen 658 TSC--SDKTLCFVDFVSGECVAQMTGHS--EAVTGVKFLNDCKHLISVSGDG--CIFVWKLP 713 (1080)
T ss_pred Eee--cCCceEEEEeccchhhhhhcCcc--hheeeeeecccchhheeecCCc--eEEEEECc
Confidence 432 34568899988877334455555 4577888887533344555555 46666654
No 387
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.02 E-value=0.74 Score=53.42 Aligned_cols=191 Identities=16% Similarity=0.181 Sum_probs=101.1
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
..|-.++||-++=.|- .+=..++++|++.+.+-+. ||+|. +| ||-=.|+ |-.
T Consensus 370 ~DILDlSWSKn~fLLS------SSMDKTVRLWh~~~~~CL~--------~F~Hn-df---VTcVaFn-PvD--------- 421 (712)
T KOG0283|consen 370 ADILDLSWSKNNFLLS------SSMDKTVRLWHPGRKECLK--------VFSHN-DF---VTCVAFN-PVD--------- 421 (712)
T ss_pred hhheecccccCCeeEe------ccccccEEeecCCCcceee--------EEecC-Ce---eEEEEec-ccC---------
Confidence 3466777887764443 2224689999999886543 12221 10 1111111 111
Q ss_pred eeeEEEeee-ccccceeeeeeec-------ccc--cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEE
Q 003878 212 FFFFYLFSL-VKSTIYSFWSVVS-------QFK--FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHF 281 (789)
Q Consensus 212 ~~~~~~~~s-~~~g~~~l~~~~~-------~~~--~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 281 (789)
.-+|+| .-+|--+||.+.. .++ +.+++++|||++.++..+... . .++..
T Consensus 422 ---DryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~-----------------C-~fY~t 480 (712)
T KOG0283|consen 422 ---DRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGY-----------------C-RFYDT 480 (712)
T ss_pred ---CCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccE-----------------E-EEEEc
Confidence 124544 5899999999987 222 489999999999998876531 1 11111
Q ss_pred CCCCCCCcEEEEec--CC-CCeeEEEEEEecCC-cEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec
Q 003878 282 LGTKQSEDILCWKD--PE-HPKYIFSGHVTEDG-QYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID 357 (789)
Q Consensus 282 lg~~~~~~~~~~~~--~~-~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~ 357 (789)
.+-....+..|-.. .. ....+.++++.|.. ..|+++++ .++|.++|+.+.. +....+
T Consensus 481 ~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSn-----DSrIRI~d~~~~~--------------lv~KfK 541 (712)
T KOG0283|consen 481 EGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSN-----DSRIRIYDGRDKD--------------LVHKFK 541 (712)
T ss_pred cCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecC-----CCceEEEeccchh--------------hhhhhc
Confidence 11111111111100 00 01135566665432 25666654 4678999985421 111112
Q ss_pred ccc----ceeEEEecCCCEEEEEECCCCCCceEEEEECCCC
Q 003878 358 GFD----AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEP 394 (789)
Q Consensus 358 ~~~----~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~ 394 (789)
++. ..-+.++.||++|+..+. +..||.|+.+..
T Consensus 542 G~~n~~SQ~~Asfs~Dgk~IVs~se----Ds~VYiW~~~~~ 578 (712)
T KOG0283|consen 542 GFRNTSSQISASFSSDGKHIVSASE----DSWVYIWKNDSF 578 (712)
T ss_pred ccccCCcceeeeEccCCCEEEEeec----CceEEEEeCCCC
Confidence 211 122457889999887652 357999987654
No 388
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.00 E-value=0.29 Score=50.96 Aligned_cols=174 Identities=15% Similarity=0.181 Sum_probs=91.5
Q ss_pred ccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccE
Q 003878 274 YHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFV 353 (789)
Q Consensus 274 ~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~ 353 (789)
..+|.+|+..++..-.+++.. -..+..+.++ ..+++-.+.+ ..+-++|+.. |.. ....
T Consensus 256 DsTvrvWDv~tge~l~tlihH----ceaVLhlrf~--ng~mvtcSkD-----rsiaVWdm~s-ps~----------it~r 313 (499)
T KOG0281|consen 256 DSTVRVWDVNTGEPLNTLIHH----CEAVLHLRFS--NGYMVTCSKD-----RSIAVWDMAS-PTD----------ITLR 313 (499)
T ss_pred CceEEEEeccCCchhhHHhhh----cceeEEEEEe--CCEEEEecCC-----ceeEEEeccC-chH----------HHHH
Confidence 346888888876543333322 1224455554 2344433322 3356667665 211 1111
Q ss_pred eeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEec-CCEEEEEEEeCCeEEE
Q 003878 354 KLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN-LNQMIVSYLSDVKYVL 432 (789)
Q Consensus 354 ~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~-~~~lv~~~~~~g~~~L 432 (789)
.+..+..+....+.=|.+ |+++.. ++-.|-+++..+.+-.+++-.+. .+++... .++++++++.+. .|
T Consensus 314 rVLvGHrAaVNvVdfd~k--yIVsAS--gDRTikvW~~st~efvRtl~gHk-----RGIAClQYr~rlvVSGSSDn--tI 382 (499)
T KOG0281|consen 314 RVLVGHRAAVNVVDFDDK--YIVSAS--GDRTIKVWSTSTCEFVRTLNGHK-----RGIACLQYRDRLVVSGSSDN--TI 382 (499)
T ss_pred HHHhhhhhheeeeccccc--eEEEec--CCceEEEEeccceeeehhhhccc-----ccceehhccCeEEEecCCCc--eE
Confidence 111222223333333445 444433 34568888988887444444443 2333332 379999988875 79
Q ss_pred EEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 433 QIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 433 ~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
++||+..|+.++.|..+..-|.-+. .|.+++. |-.--+.+-.||+.++
T Consensus 383 Rlwdi~~G~cLRvLeGHEeLvRciR--Fd~krIV----SGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 383 RLWDIECGACLRVLEGHEELVRCIR--FDNKRIV----SGAYDGKIKVWDLQAA 430 (499)
T ss_pred EEEeccccHHHHHHhchHHhhhhee--ecCceee----eccccceEEEEecccc
Confidence 9999999988777765533333222 2444433 2234456667776554
No 389
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=94.92 E-value=1 Score=51.88 Aligned_cols=159 Identities=9% Similarity=-0.016 Sum_probs=94.0
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
...+.|++-.-.|+.+. .....|..|++..+.+.. +.+. +...+.++.|||--...++
T Consensus 136 ~~~ldfh~tep~iliSG------------------SQDg~vK~~DlR~~~S~~-t~~~---nSESiRDV~fsp~~~~~F~ 193 (839)
T KOG0269|consen 136 ANKLDFHSTEPNILISG------------------SQDGTVKCWDLRSKKSKS-TFRS---NSESIRDVKFSPGYGNKFA 193 (839)
T ss_pred eeeeeeccCCccEEEec------------------CCCceEEEEeeecccccc-cccc---cchhhhceeeccCCCceEE
Confidence 36678888777777762 334568888887665432 2222 2334668899997777777
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEE-EecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEV-IANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
...++ .-|-++|+.. + .++..+++...+..+.. |.|++..|+ | ++.+..+..|+..++.
T Consensus 194 s~~ds----G~lqlWDlRq-p-----------~r~~~k~~AH~GpV~c~nwhPnr~~lA--T--GGRDK~vkiWd~t~~~ 253 (839)
T KOG0269|consen 194 SIHDS----GYLQLWDLRQ-P-----------DRCEKKLTAHNGPVLCLNWHPNREWLA--T--GGRDKMVKIWDMTDSR 253 (839)
T ss_pred EecCC----ceEEEeeccC-c-----------hhHHHHhhcccCceEEEeecCCCceee--e--cCCCccEEEEeccCCC
Confidence 76553 3477788875 2 33344555554444433 999776555 2 2334668888887654
Q ss_pred CeEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECC
Q 003878 396 DWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLK 438 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~ 438 (789)
..++..-.....+.-+.|-|. .+.+++..--+...|++||+.
T Consensus 254 -~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr 296 (839)
T KOG0269|consen 254 -AKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVR 296 (839)
T ss_pred -ccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeec
Confidence 111111111245666778774 234444444445689999986
No 390
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=94.87 E-value=0.063 Score=59.58 Aligned_cols=90 Identities=18% Similarity=0.160 Sum_probs=68.1
Q ss_pred CCccEEEEEcCCC-CccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHc--
Q 003878 536 GSHPCLLYGYGGF-NISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISA-- 612 (789)
Q Consensus 536 ~~~P~ll~~hGg~-~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~-- 612 (789)
...-+|+++|||. -.......-+...+|..+.|.-++.+||.-..| ...+...+.+..|.-|++.+
T Consensus 394 ~S~sli~HcHGGGfVAqsSkSHE~YLr~Wa~aL~cPiiSVdYSLAPE-----------aPFPRaleEv~fAYcW~inn~a 462 (880)
T KOG4388|consen 394 RSRSLIVHCHGGGFVAQSSKSHEPYLRSWAQALGCPIISVDYSLAPE-----------APFPRALEEVFFAYCWAINNCA 462 (880)
T ss_pred CCceEEEEecCCceeeeccccccHHHHHHHHHhCCCeEEeeeccCCC-----------CCCCcHHHHHHHHHHHHhcCHH
Confidence 3456899999984 344556666667788888999999999876543 44566778888888999876
Q ss_pred --CCCCCCcEEEEeeChHHHHHHHHHH
Q 003878 613 --GYTQSRKLCIEGGSNGGLLVGACIN 637 (789)
Q Consensus 613 --~~~d~~~i~i~G~S~GG~l~~~~~~ 637 (789)
|+ ..+||++.|.|+||.|...++.
T Consensus 463 llG~-TgEriv~aGDSAGgNL~~~VaL 488 (880)
T KOG4388|consen 463 LLGS-TGERIVLAGDSAGGNLCFTVAL 488 (880)
T ss_pred HhCc-ccceEEEeccCCCcceeehhHH
Confidence 44 4689999999999987655443
No 391
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=94.81 E-value=5.9 Score=41.15 Aligned_cols=32 Identities=13% Similarity=0.244 Sum_probs=24.5
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCc
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI 169 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~ 169 (789)
.|+++.+||.+..|+.+. =. ..++++|+.+..
T Consensus 15 ~IS~v~f~~~~~~LLvss-WD----gslrlYdv~~~~ 46 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSS-WD----GSLRLYDVPANS 46 (323)
T ss_pred ceeeEEEcCcCCcEEEEe-cc----CcEEEEeccchh
Confidence 478899999999888655 23 368999988763
No 392
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=94.75 E-value=1.3 Score=49.87 Aligned_cols=165 Identities=13% Similarity=0.065 Sum_probs=92.0
Q ss_pred EEEEEEec-CCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEE-EecCC-CEEEEEEC
Q 003878 302 IFSGHVTE-DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEV-IANDD-TVFTFLTN 378 (789)
Q Consensus 302 ~~~~~~Sp-DG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~dG-~~l~~~tn 378 (789)
+..++|.| |-++|++...++ .-.||.+...+++.- +..|...++.+.+..+.. |.|=- +-|+.
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg---~i~lWr~~a~gl~e~--------~~tPe~~lt~h~eKI~slRfHPLAadvLa~--- 695 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDG---QINLWRLTANGLPEN--------EMTPEKILTIHGEKITSLRFHPLAADVLAV--- 695 (1012)
T ss_pred eeecccCCCChHHeeecccCc---eEEEEEeccCCCCcc--------cCCcceeeecccceEEEEEecchhhhHhhh---
Confidence 45778888 788888876433 466777776654311 112222233333322221 33311 11111
Q ss_pred CCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCce-eeecccCCee-EEEe
Q 003878 379 KDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSL-LHQLPIEIGS-VNAI 456 (789)
Q Consensus 379 ~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~-~~~l~~~~~~-v~~~ 456 (789)
...+..|-+||+.+.+....+..|. ..|.+++|+++++.+++.-.|| .|++++..+++. +++=..+.++ -..+
T Consensus 696 -asyd~Ti~lWDl~~~~~~~~l~gHt--dqIf~~AWSpdGr~~AtVcKDg--~~rVy~Prs~e~pv~Eg~gpvgtRgARi 770 (1012)
T KOG1445|consen 696 -ASYDSTIELWDLANAKLYSRLVGHT--DQIFGIAWSPDGRRIATVCKDG--TLRVYEPRSREQPVYEGKGPVGTRGARI 770 (1012)
T ss_pred -hhccceeeeeehhhhhhhheeccCc--CceeEEEECCCCcceeeeecCc--eEEEeCCCCCCCccccCCCCccCcceeE
Confidence 1235678889998876444566666 4588999999889998888887 788888876653 1111222111 1123
Q ss_pred ecccCCcEEEEEEcCCCCCcEEEEEECCC
Q 003878 457 SARREDSVVFISFTSFLIPGIVYQCNLKT 485 (789)
Q Consensus 457 s~s~d~~~l~~~~ss~~~P~~ly~~dl~t 485 (789)
.|.-|+..++++--.-..-..+..||..+
T Consensus 771 ~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 771 LWACDGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred EEEecCcEEEEecccccchhhhhhhhhhh
Confidence 44456776665433333344666666543
No 393
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.73 E-value=0.24 Score=48.33 Aligned_cols=110 Identities=12% Similarity=0.054 Sum_probs=64.1
Q ss_pred EEEEecCCCCCCCCccEEEEEcCCCCccCC-CCC-------------CHHHHHHHHcCCeEEEEEeecCCCCCChhHHhc
Q 003878 524 MFIVSKKNIKLDGSHPCLLYGYGGFNISVT-PSF-------------SVSRTILMRHLGAVFCIANIRGGGEYGEEWHKG 589 (789)
Q Consensus 524 ~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~-~~~-------------~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~ 589 (789)
.+|+..++. ...+..++|++||+.-.... +.- -+.+.+..+ .||-|++.|.-- -+.+++.
T Consensus 88 SFiF~s~~~-lt~~~kLlVLIHGSGvVrAGQWARrLIIN~~Ld~GTQiPyi~rAv~-~Gygviv~N~N~----~~kfye~ 161 (297)
T KOG3967|consen 88 SFIFMSEDA-LTNPQKLLVLIHGSGVVRAGQWARRLIINEDLDSGTQIPYIKRAVA-EGYGVIVLNPNR----ERKFYEK 161 (297)
T ss_pred ceEEEChhH-hcCccceEEEEecCceEecchHhhhhhhccccccCCcChHHHHHHH-cCCcEEEeCCch----hhhhhhc
Confidence 345555543 23566799999996432221 110 122334444 788888887531 1223332
Q ss_pred cccc--CCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC
Q 003878 590 GALA--KKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPD 641 (789)
Q Consensus 590 ~~~~--~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd 641 (789)
-... .-....+-+..+..+++.. ..+..+++.-||+||++++-++-+.|+
T Consensus 162 k~np~kyirt~veh~~yvw~~~v~p--a~~~sv~vvahsyGG~~t~~l~~~f~~ 213 (297)
T KOG3967|consen 162 KRNPQKYIRTPVEHAKYVWKNIVLP--AKAESVFVVAHSYGGSLTLDLVERFPD 213 (297)
T ss_pred ccCcchhccchHHHHHHHHHHHhcc--cCcceEEEEEeccCChhHHHHHHhcCC
Confidence 1110 1113345555555555543 467889999999999999999999987
No 394
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=94.71 E-value=0.16 Score=56.88 Aligned_cols=141 Identities=16% Similarity=0.093 Sum_probs=78.8
Q ss_pred EEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCC---------C--------HHHHHHHHcCCeEEEE
Q 003878 511 VFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSF---------S--------VSRTILMRHLGAVFCI 573 (789)
Q Consensus 511 ~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~---------~--------~~~~~~l~~~G~~v~~ 573 (789)
+.+....+ ..+-.|++..++ .....|++|++-||||.+...+. . ..-.+|.. -..++.
T Consensus 16 l~~~~~~~-~~lfyw~~~s~~--~~~~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~~--~an~l~ 90 (415)
T PF00450_consen 16 LPVNDNEN-AHLFYWFFESRN--DPEDDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWNK--FANLLF 90 (415)
T ss_dssp EEECTTTT-EEEEEEEEE-SS--GGCSS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GGG--TSEEEE
T ss_pred EecCCCCC-cEEEEEEEEeCC--CCCCccEEEEecCCceeccccccccccCceEEeeccccccccccccccc--ccceEE
Confidence 44444466 788888776665 24678999999999987653111 0 01123332 356788
Q ss_pred EeecCCCCCChhHHhcccccCCcchHHHHHHHHHH-HHHcCCCCCCcEEEEeeChHHHHHHHHH----HhC------CCc
Q 003878 574 ANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEY-LISAGYTQSRKLCIEGGSNGGLLVGACI----NQR------PDL 642 (789)
Q Consensus 574 ~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~-L~~~~~~d~~~i~i~G~S~GG~l~~~~~----~~~------pd~ 642 (789)
+|..-|.+|...-........-....+|+..+++. +...+....+.+.|.|-|+||..+-.++ .+. +=.
T Consensus 91 iD~PvGtGfS~~~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~in 170 (415)
T PF00450_consen 91 IDQPVGTGFSYGNDPSDYVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKIN 170 (415)
T ss_dssp E--STTSTT-EESSGGGGS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSE
T ss_pred EeecCceEEeeccccccccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccccccccc
Confidence 88776666654422221111222334566555554 3344445667899999999997654433 333 224
Q ss_pred eeEEEecCCccccc
Q 003878 643 FGCALAHVGVMDML 656 (789)
Q Consensus 643 f~a~v~~~p~~d~~ 656 (789)
++++++..|++|..
T Consensus 171 LkGi~IGng~~dp~ 184 (415)
T PF00450_consen 171 LKGIAIGNGWIDPR 184 (415)
T ss_dssp EEEEEEESE-SBHH
T ss_pred cccceecCcccccc
Confidence 89999999988874
No 395
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=94.61 E-value=1.1 Score=46.26 Aligned_cols=130 Identities=8% Similarity=0.030 Sum_probs=81.6
Q ss_pred EEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCc---cCCCCC-CHHHHHHHHcCCeEEEEEeecCCCCCC
Q 003878 508 VHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNI---SVTPSF-SVSRTILMRHLGAVFCIANIRGGGEYG 583 (789)
Q Consensus 508 ~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~---~~~~~~-~~~~~~~l~~~G~~v~~~~~RG~g~~g 583 (789)
+++..+.+.-| .|++.++-- ++++.|++|..|.-.-. .....| .+....++. + +.+.-++..|.-+--
T Consensus 22 ~~e~~V~T~~G--~v~V~V~Gd----~~~~kpaiiTyhDlglN~~scFq~ff~~p~m~ei~~-~-fcv~HV~~PGqe~gA 93 (326)
T KOG2931|consen 22 CQEHDVETAHG--VVHVTVYGD----PKGNKPAIITYHDLGLNHKSCFQGFFNFPDMAEILE-H-FCVYHVDAPGQEDGA 93 (326)
T ss_pred ceeeeeccccc--cEEEEEecC----CCCCCceEEEecccccchHhHhHHhhcCHhHHHHHh-h-eEEEecCCCccccCC
Confidence 34444555557 466665532 23467889999984222 122333 344556665 5 888888888743211
Q ss_pred hhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCC
Q 003878 584 EEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 651 (789)
Q Consensus 584 ~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p 651 (789)
+.+ .....-.+.+|+.+-+-.+.+. ..-+-|..+|--+|+++-...|..+|++.-+.|+..+
T Consensus 94 p~~----p~~y~yPsmd~LAd~l~~VL~~--f~lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~ 155 (326)
T KOG2931|consen 94 PSF----PEGYPYPSMDDLADMLPEVLDH--FGLKSVIGMGVGAGAYILARFALNHPERVLGLVLINC 155 (326)
T ss_pred ccC----CCCCCCCCHHHHHHHHHHHHHh--cCcceEEEecccccHHHHHHHHhcChhheeEEEEEec
Confidence 111 1122234567766666665554 2235799999999999999999999999999998765
No 396
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=94.58 E-value=1.5 Score=46.36 Aligned_cols=139 Identities=12% Similarity=0.076 Sum_probs=79.1
Q ss_pred EEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCC
Q 003878 302 IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDA 381 (789)
Q Consensus 302 ~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~ 381 (789)
+..+.++|-...|+.++.. ...|+++|+..+ .|+.+++-.....--.|.|.+ ..++..|+
T Consensus 190 i~svkfNpvETsILas~~s----DrsIvLyD~R~~-------------~Pl~KVi~~mRTN~IswnPea-fnF~~a~E-- 249 (433)
T KOG0268|consen 190 ISSVKFNPVETSILASCAS----DRSIVLYDLRQA-------------SPLKKVILTMRTNTICWNPEA-FNFVAANE-- 249 (433)
T ss_pred eeEEecCCCcchheeeecc----CCceEEEecccC-------------CccceeeeeccccceecCccc-cceeeccc--
Confidence 4567788877777665522 345899998873 334444432222223488832 33333333
Q ss_pred CCceEEEEECCCCCCeEEeccCCC-CceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC--CeeEEEeec
Q 003878 382 PKYKIIRVDLKEPNDWFEVIPEAE-RDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE--IGSVNAISA 458 (789)
Q Consensus 382 ~~~~L~~~dl~~~~~~~~l~~~~~-~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~--~~~v~~~s~ 458 (789)
+..||..|+..-+ +++--+.+ ...+.++.+++-+.=+++++-|- .|+++....|.. +.+--. .-.|..+.+
T Consensus 250 -D~nlY~~DmR~l~--~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk--sIRIf~~~~~~S-RdiYhtkRMq~V~~Vk~ 323 (433)
T KOG0268|consen 250 -DHNLYTYDMRNLS--RPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK--SIRIFPVNHGHS-RDIYHTKRMQHVFCVKY 323 (433)
T ss_pred -cccceehhhhhhc--ccchhhcccceeEEEeccCCCcchhccccccc--eEEEeecCCCcc-hhhhhHhhhheeeEEEE
Confidence 4789999986644 22222222 23456777777556566666554 577777765554 444322 334556778
Q ss_pred ccCCcEEE
Q 003878 459 RREDSVVF 466 (789)
Q Consensus 459 s~d~~~l~ 466 (789)
|-|++.++
T Consensus 324 S~Dskyi~ 331 (433)
T KOG0268|consen 324 SMDSKYII 331 (433)
T ss_pred eccccEEE
Confidence 88887443
No 397
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=94.54 E-value=4.7 Score=42.69 Aligned_cols=179 Identities=15% Similarity=0.107 Sum_probs=104.7
Q ss_pred ccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccE
Q 003878 274 YHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFV 353 (789)
Q Consensus 274 ~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~ 353 (789)
...+.+|++.+++-+ ...+.+-....++++|+---||+-... ...|-.+|++..+ ..+
T Consensus 172 DrtikIwDlatg~Lk----ltltGhi~~vr~vavS~rHpYlFs~ge-----dk~VKCwDLe~nk-------------vIR 229 (460)
T KOG0285|consen 172 DRTIKIWDLATGQLK----LTLTGHIETVRGVAVSKRHPYLFSAGE-----DKQVKCWDLEYNK-------------VIR 229 (460)
T ss_pred CceeEEEEcccCeEE----EeecchhheeeeeeecccCceEEEecC-----CCeeEEEechhhh-------------hHH
Confidence 346889999987533 223333444678899998888865442 2457888988632 011
Q ss_pred eeeccccceeEE-EecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEE
Q 003878 354 KLIDGFDAQYEV-IANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVL 432 (789)
Q Consensus 354 ~l~~~~~~~~~~-~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L 432 (789)
.--......+.. .-|.- .+++...+ +..+-++|+.+......+..+. ..+..+...+-+--+++.+.|+ .|
T Consensus 230 ~YhGHlS~V~~L~lhPTl-dvl~t~gr---Dst~RvWDiRtr~~V~~l~GH~--~~V~~V~~~~~dpqvit~S~D~--tv 301 (460)
T KOG0285|consen 230 HYHGHLSGVYCLDLHPTL-DVLVTGGR---DSTIRVWDIRTRASVHVLSGHT--NPVASVMCQPTDPQVITGSHDS--TV 301 (460)
T ss_pred HhccccceeEEEeccccc-eeEEecCC---cceEEEeeecccceEEEecCCC--CcceeEEeecCCCceEEecCCc--eE
Confidence 111111112222 22322 23333333 4567778888765444454444 4566666665345566677775 79
Q ss_pred EEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 433 QIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 433 ~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
.+||+..|+....++...-++..+...|....++ | ..|..+-.+++..|+
T Consensus 302 rlWDl~agkt~~tlt~hkksvral~lhP~e~~fA----S-as~dnik~w~~p~g~ 351 (460)
T KOG0285|consen 302 RLWDLRAGKTMITLTHHKKSVRALCLHPKENLFA----S-ASPDNIKQWKLPEGE 351 (460)
T ss_pred EEeeeccCceeEeeecccceeeEEecCCchhhhh----c-cCCccceeccCCccc
Confidence 9999998987667776667777777777654222 1 345666677776664
No 398
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=94.52 E-value=9 Score=44.33 Aligned_cols=174 Identities=13% Similarity=0.079 Sum_probs=92.9
Q ss_pred cEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEe
Q 003878 275 HEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVK 354 (789)
Q Consensus 275 ~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 354 (789)
.++++|+..++...- ++... ...+ ...+-++-.+ ... .....|.++++.++. ...
T Consensus 271 ~t~rvWd~~sg~C~~--~l~gh--~stv--~~~~~~~~~~-~sg----s~D~tVkVW~v~n~~--------------~l~ 325 (537)
T KOG0274|consen 271 KTERVWDCSTGECTH--SLQGH--TSSV--RCLTIDPFLL-VSG----SRDNTVKVWDVTNGA--------------CLN 325 (537)
T ss_pred CcEEeEecCCCcEEE--EecCC--CceE--EEEEccCceE-eec----cCCceEEEEeccCcc--------------eEE
Confidence 458888887765432 22222 1111 1223333333 221 124678899988742 222
Q ss_pred eeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEE
Q 003878 355 LIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQI 434 (789)
Q Consensus 355 l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~ 434 (789)
+..+.......+.-++..++..+- ++.|.++++..++-.+.+..|. ..+.++.+.. ...+++..-|+ .|.+
T Consensus 326 l~~~h~~~V~~v~~~~~~lvsgs~----d~~v~VW~~~~~~cl~sl~gH~--~~V~sl~~~~-~~~~~Sgs~D~--~Ikv 396 (537)
T KOG0274|consen 326 LLRGHTGPVNCVQLDEPLLVSGSY----DGTVKVWDPRTGKCLKSLSGHT--GRVYSLIVDS-ENRLLSGSLDT--TIKV 396 (537)
T ss_pred EeccccccEEEEEecCCEEEEEec----CceEEEEEhhhceeeeeecCCc--ceEEEEEecC-cceEEeeeecc--ceEe
Confidence 333221122223345666654332 3478888888776455555554 4566775543 26667777764 7999
Q ss_pred EECCCC-ceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCCc
Q 003878 435 RDLKNG-SLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETP 488 (789)
Q Consensus 435 ~dl~tG-~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~ 488 (789)
||+.++ +....+..+...+..+.. .++. ++ |-.-.+++..||..++++
T Consensus 397 Wdl~~~~~c~~tl~~h~~~v~~l~~--~~~~-Lv---s~~aD~~Ik~WD~~~~~~ 445 (537)
T KOG0274|consen 397 WDLRTKRKCIHTLQGHTSLVSSLLL--RDNF-LV---SSSADGTIKLWDAEEGEC 445 (537)
T ss_pred ecCCchhhhhhhhcCCccccccccc--ccce-eE---eccccccEEEeecccCce
Confidence 999876 444445444444433322 2332 22 223445889999988873
No 399
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=94.45 E-value=5.6 Score=41.01 Aligned_cols=57 Identities=21% Similarity=0.282 Sum_probs=36.0
Q ss_pred EEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCc
Q 003878 107 LYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI 169 (789)
Q Consensus 107 ~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~ 169 (789)
|=.|...|+-..++=-+ ...+|..-+...++||||+..|||+.+ + .+|+++|+.+.+
T Consensus 20 iEiRsa~Ddf~si~~kc-qVpkD~~PQWRkl~WSpD~tlLa~a~S-~----G~i~vfdl~g~~ 76 (282)
T PF15492_consen 20 IEIRSAKDDFSSIIGKC-QVPKDPNPQWRKLAWSPDCTLLAYAES-T----GTIRVFDLMGSE 76 (282)
T ss_pred EEEEeccCCchheeEEE-ecCCCCCchheEEEECCCCcEEEEEcC-C----CeEEEEecccce
Confidence 55566555332222111 223343345678899999999999876 3 379999998653
No 400
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=94.41 E-value=0.17 Score=51.94 Aligned_cols=112 Identities=15% Similarity=0.110 Sum_probs=64.1
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCe--EEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcC
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGA--VFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAG 613 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~--~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~ 613 (789)
.+..++||+||- ......... ...++....|+ .++.+.....|..- .|..+ ......+-.++...++.|.+.
T Consensus 16 ~~~~vlvfVHGy-n~~f~~a~~-r~aql~~~~~~~~~~i~FsWPS~g~~~-~Y~~d--~~~a~~s~~~l~~~L~~L~~~- 89 (233)
T PF05990_consen 16 PDKEVLVFVHGY-NNSFEDALR-RAAQLAHDLGFPGVVILFSWPSDGSLL-GYFYD--RESARFSGPALARFLRDLARA- 89 (233)
T ss_pred CCCeEEEEEeCC-CCCHHHHHH-HHHHHHHHhCCCceEEEEEcCCCCChh-hhhhh--hhhHHHHHHHHHHHHHHHHhc-
Confidence 466899999994 433222111 11233333333 78888888765421 12221 112223345566666666665
Q ss_pred CCCCCcEEEEeeChHHHHHHHHHHhC----C-----CceeEEEecCCccc
Q 003878 614 YTQSRKLCIEGGSNGGLLVGACINQR----P-----DLFGCALAHVGVMD 654 (789)
Q Consensus 614 ~~d~~~i~i~G~S~GG~l~~~~~~~~----p-----d~f~a~v~~~p~~d 654 (789)
....+|-|++||||+.+++.++.+- + ..|..+|+.+|-+|
T Consensus 90 -~~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid 138 (233)
T PF05990_consen 90 -PGIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDID 138 (233)
T ss_pred -cCCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCC
Confidence 3457999999999999988876542 1 24556666666444
No 401
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=94.40 E-value=1.4 Score=44.17 Aligned_cols=78 Identities=15% Similarity=0.169 Sum_probs=50.2
Q ss_pred eeeEEEec-CCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 409 LESATAVN-LNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 409 i~~v~~~~-~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
|.++.+.+ .+.+++.. |...+|.+|+++|+..+.+..+...+..+.......+++ |-..-+++..||.+|++
T Consensus 117 INam~ldP~enSi~~Ag---GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qil----sG~EDGtvRvWd~kt~k 189 (325)
T KOG0649|consen 117 INAMWLDPSENSILFAG---GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQIL----SGAEDGTVRVWDTKTQK 189 (325)
T ss_pred cceeEeccCCCcEEEec---CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCccee----ecCCCccEEEEeccccc
Confidence 34555554 25666655 445899999999998677766655565554433333444 34567899999999987
Q ss_pred ceEEEee
Q 003878 488 PEMKIFR 494 (789)
Q Consensus 488 ~~~~~l~ 494 (789)
..+.+.
T Consensus 190 -~v~~ie 195 (325)
T KOG0649|consen 190 -HVSMIE 195 (325)
T ss_pred -eeEEec
Confidence 344443
No 402
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=94.37 E-value=1.8 Score=44.89 Aligned_cols=148 Identities=12% Similarity=0.036 Sum_probs=83.6
Q ss_pred EecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee-EEEecCCC
Q 003878 293 WKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIANDDT 371 (789)
Q Consensus 293 ~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dG~ 371 (789)
|..+.+...+..++. +|.|++-.++ ...|+++|+.... ....+....+... ..|.++-.
T Consensus 37 F~~~aH~~sitavAV--s~~~~aSGss-----DetI~IYDm~k~~-------------qlg~ll~HagsitaL~F~~~~S 96 (362)
T KOG0294|consen 37 FAFSAHAGSITALAV--SGPYVASGSS-----DETIHIYDMRKRK-------------QLGILLSHAGSITALKFYPPLS 96 (362)
T ss_pred ccccccccceeEEEe--cceeEeccCC-----CCcEEEEeccchh-------------hhcceeccccceEEEEecCCcc
Confidence 333333333444444 6888875443 3558999987632 1122222211111 11333221
Q ss_pred --EEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC
Q 003878 372 --VFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE 449 (789)
Q Consensus 372 --~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~ 449 (789)
+|+ ..+.+++|+.++...-.....+-++. ..+.++++.|.++|.++...|+ .|..||+-.|+.-..+.+.
T Consensus 97 ~shLl----S~sdDG~i~iw~~~~W~~~~slK~H~--~~Vt~lsiHPS~KLALsVg~D~--~lr~WNLV~Gr~a~v~~L~ 168 (362)
T KOG0294|consen 97 KSHLL----SGSDDGHIIIWRVGSWELLKSLKAHK--GQVTDLSIHPSGKLALSVGGDQ--VLRTWNLVRGRVAFVLNLK 168 (362)
T ss_pred hhhee----eecCCCcEEEEEcCCeEEeeeecccc--cccceeEecCCCceEEEEcCCc--eeeeehhhcCccceeeccC
Confidence 333 13457889999976422122333454 3378899988788998887776 7889999878753444443
Q ss_pred CeeEEEeecccCCcEEEEEE
Q 003878 450 IGSVNAISARREDSVVFISF 469 (789)
Q Consensus 450 ~~~v~~~s~s~d~~~l~~~~ 469 (789)
.. .+.+.|++.|+++++..
T Consensus 169 ~~-at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 169 NK-ATLVSWSPQGDHFVVSG 187 (362)
T ss_pred Cc-ceeeEEcCCCCEEEEEe
Confidence 21 23477889998777643
No 403
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=94.32 E-value=2.7 Score=43.78 Aligned_cols=204 Identities=16% Similarity=0.127 Sum_probs=109.5
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEEC-CCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFL-GTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l-g~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
..-+|++|+..|+.+.... ++.++.. +.+.=+ ......+++..+..+.|+|.+..|+-
T Consensus 14 tchAwn~drt~iAv~~~~~-------------------evhiy~~~~~~~w~--~~htls~Hd~~vtgvdWap~snrIvt 72 (361)
T KOG1523|consen 14 TCHAWNSDRTQIAVSPNNH-------------------EVHIYSMLGADLWE--PAHTLSEHDKIVTGVDWAPKSNRIVT 72 (361)
T ss_pred eeeeecCCCceEEeccCCc-------------------eEEEEEecCCCCce--eceehhhhCcceeEEeecCCCCceeE
Confidence 5679999999999875432 2333332 222112 12222344555667999999999987
Q ss_pred EEEcCCCCceEEEEEEC-CCCCCCcccccccCCCCccEeeec-cccceeEEEecCCCEEEEEECCCCCCceEEEEECCCC
Q 003878 317 CIEENCDPVNKVYYCDL-SALPEGLEGFKKRDGLLPFVKLID-GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEP 394 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~-~~g~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~ 394 (789)
.+.+++ -|++.. ++++ .++...+.. ...+....|+|.+..|++-+. .-.|-++=.++.
T Consensus 73 cs~drn-----ayVw~~~~~~~-----------WkptlvLlRiNrAAt~V~WsP~enkFAVgSg----ar~isVcy~E~E 132 (361)
T KOG1523|consen 73 CSHDRN-----AYVWTQPSGGT-----------WKPTLVLLRINRAATCVKWSPKENKFAVGSG----ARLISVCYYEQE 132 (361)
T ss_pred ccCCCC-----ccccccCCCCe-----------eccceeEEEeccceeeEeecCcCceEEeccC----ccEEEEEEEecc
Confidence 665432 355544 3321 122111211 223334559999888876332 123333444443
Q ss_pred CCeE--EeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEE---EECCCCce----eeeccc--------C-CeeEEEe
Q 003878 395 NDWF--EVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQI---RDLKNGSL----LHQLPI--------E-IGSVNAI 456 (789)
Q Consensus 395 ~~~~--~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~---~dl~tG~~----~~~l~~--------~-~~~v~~~ 456 (789)
++|= ..+...-...+..++|.+++-+++..+-|+.-+++- -+++.... -..+++ . .+-+..+
T Consensus 133 NdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v 212 (361)
T KOG1523|consen 133 NDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGV 212 (361)
T ss_pred cceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeee
Confidence 3341 111111124577899998777888888887665543 33331100 011222 1 2446678
Q ss_pred ecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 457 SARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 457 s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
.+++.|+.|.+.. .+..+...|....
T Consensus 213 ~fs~sG~~lawv~----Hds~v~~~da~~p 238 (361)
T KOG1523|consen 213 LFSPSGNRLAWVG----HDSTVSFVDAAGP 238 (361)
T ss_pred EeCCCCCEeeEec----CCCceEEeecCCC
Confidence 8899999888763 4456666665433
No 404
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=94.31 E-value=0.18 Score=51.31 Aligned_cols=84 Identities=15% Similarity=0.087 Sum_probs=52.1
Q ss_pred cEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHH-HHHHHHcCCCCC
Q 003878 539 PCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISA-SEYLISAGYTQS 617 (789)
Q Consensus 539 P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~-~~~L~~~~~~d~ 617 (789)
+.|+++|++.|. ...|. .+...+...++.|..+..+|-+. ......+++++.+. ++.+.+. .|
T Consensus 1 ~~lf~~p~~gG~--~~~y~-~la~~l~~~~~~v~~i~~~~~~~----------~~~~~~si~~la~~y~~~I~~~---~~ 64 (229)
T PF00975_consen 1 RPLFCFPPAGGS--ASSYR-PLARALPDDVIGVYGIEYPGRGD----------DEPPPDSIEELASRYAEAIRAR---QP 64 (229)
T ss_dssp -EEEEESSTTCS--GGGGH-HHHHHHTTTEEEEEEECSTTSCT----------TSHEESSHHHHHHHHHHHHHHH---TS
T ss_pred CeEEEEcCCccC--HHHHH-HHHHhCCCCeEEEEEEecCCCCC----------CCCCCCCHHHHHHHHHHHhhhh---CC
Confidence 357788887763 23444 35666662358888888877541 12223455555443 3333333 23
Q ss_pred C-cEEEEeeChHHHHHHHHHHh
Q 003878 618 R-KLCIEGGSNGGLLVGACINQ 638 (789)
Q Consensus 618 ~-~i~i~G~S~GG~l~~~~~~~ 638 (789)
+ .+.++|+|+||.+|..+|.+
T Consensus 65 ~gp~~L~G~S~Gg~lA~E~A~~ 86 (229)
T PF00975_consen 65 EGPYVLAGWSFGGILAFEMARQ 86 (229)
T ss_dssp SSSEEEEEETHHHHHHHHHHHH
T ss_pred CCCeeehccCccHHHHHHHHHH
Confidence 3 89999999999999988765
No 405
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=94.29 E-value=1.5 Score=47.78 Aligned_cols=174 Identities=14% Similarity=0.143 Sum_probs=99.0
Q ss_pred EEEEEECCCCCCCc-EEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEe
Q 003878 276 EFYYHFLGTKQSED-ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVK 354 (789)
Q Consensus 276 ~i~~~~lg~~~~~~-~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 354 (789)
.|.+|.+....... ..+. |.-+..++-+|+|.+|+.... ...||+|.+.+|. .+..
T Consensus 62 ~l~vw~i~k~~~~~q~~v~-----Pg~v~al~s~n~G~~l~ag~i-----~g~lYlWelssG~-------------LL~v 118 (476)
T KOG0646|consen 62 LLHVWEILKKDQVVQYIVL-----PGPVHALASSNLGYFLLAGTI-----SGNLYLWELSSGI-------------LLNV 118 (476)
T ss_pred cccccccCchhhhhhhccc-----ccceeeeecCCCceEEEeecc-----cCcEEEEEecccc-------------HHHH
Confidence 57777776543222 1111 222446788999999987643 3459999999863 1222
Q ss_pred eeccccceeE-EEecCCCEEEEEECCCCCCceEEEEECCC---CC---C--eEEeccCCCCceeeeEEEecC--CEEEEE
Q 003878 355 LIDGFDAQYE-VIANDDTVFTFLTNKDAPKYKIIRVDLKE---PN---D--WFEVIPEAERDVLESATAVNL--NQMIVS 423 (789)
Q Consensus 355 l~~~~~~~~~-~~s~dG~~l~~~tn~~~~~~~L~~~dl~~---~~---~--~~~l~~~~~~~~i~~v~~~~~--~~lv~~ 423 (789)
+...+..... .++.||.+|+-- +.++.|..|.+.. .. . ..-.+.+ ..-.+.++.+..+ +..+++
T Consensus 119 ~~aHYQ~ITcL~fs~dgs~iiTg----skDg~V~vW~l~~lv~a~~~~~~~p~~~f~~-HtlsITDl~ig~Gg~~~rl~T 193 (476)
T KOG0646|consen 119 LSAHYQSITCLKFSDDGSHIITG----SKDGAVLVWLLTDLVSADNDHSVKPLHIFSD-HTLSITDLQIGSGGTNARLYT 193 (476)
T ss_pred HHhhccceeEEEEeCCCcEEEec----CCCccEEEEEEEeecccccCCCccceeeecc-CcceeEEEEecCCCccceEEE
Confidence 2334433322 378888876632 2345566665421 11 0 1111111 1245667766653 345566
Q ss_pred EEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECC
Q 003878 424 YLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 484 (789)
Q Consensus 424 ~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~ 484 (789)
.+.|. .+.+||+..|..+..+.+| ..+.++..+|.+..+++. +.-+.++..++.
T Consensus 194 aS~D~--t~k~wdlS~g~LLlti~fp-~si~av~lDpae~~~yiG----t~~G~I~~~~~~ 247 (476)
T KOG0646|consen 194 ASEDR--TIKLWDLSLGVLLLTITFP-SSIKAVALDPAERVVYIG----TEEGKIFQNLLF 247 (476)
T ss_pred ecCCc--eEEEEEeccceeeEEEecC-CcceeEEEcccccEEEec----CCcceEEeeehh
Confidence 66664 6888999888876677766 345567788887776654 334566666653
No 406
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.05 E-value=7.7 Score=39.34 Aligned_cols=224 Identities=11% Similarity=0.054 Sum_probs=123.5
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccce
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIF 212 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 212 (789)
.+-.++||+...-++++..-.| .+++||+.-. ..|.. +|.+|..
T Consensus 62 ~LfdV~Wse~~e~~~~~a~GDG----SLrl~d~~~~-s~Pi~------~~kEH~~------------------------- 105 (311)
T KOG0277|consen 62 GLFDVAWSENHENQVIAASGDG----SLRLFDLTMP-SKPIH------KFKEHKR------------------------- 105 (311)
T ss_pred ceeEeeecCCCcceEEEEecCc----eEEEeccCCC-Ccchh------HHHhhhh-------------------------
Confidence 3567889999999998887555 6999994322 21211 1222211
Q ss_pred eeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEE
Q 003878 213 FFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILC 292 (789)
Q Consensus 213 ~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~ 292 (789)
.+.++.|.+-.+.++.+.. -...|.+|+..-+++ +..
T Consensus 106 -----------------------EV~Svdwn~~~r~~~ltsS------------------WD~TiKLW~~~r~~S--v~T 142 (311)
T KOG0277|consen 106 -----------------------EVYSVDWNTVRRRIFLTSS------------------WDGTIKLWDPNRPNS--VQT 142 (311)
T ss_pred -----------------------heEEeccccccceeEEeec------------------cCCceEeecCCCCcc--eEe
Confidence 3578889887777777642 123466665443332 344
Q ss_pred EecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCE
Q 003878 293 WKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTV 372 (789)
Q Consensus 293 ~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~ 372 (789)
|.+. ...+....|||--.-++.+++. ...+.++|+... ++...-......+--..|++....
T Consensus 143 f~gh--~~~Iy~a~~sp~~~nlfas~Sg----d~~l~lwdvr~~------------gk~~~i~ah~~Eil~cdw~ky~~~ 204 (311)
T KOG0277|consen 143 FNGH--NSCIYQAAFSPHIPNLFASASG----DGTLRLWDVRSP------------GKFMSIEAHNSEILCCDWSKYNHN 204 (311)
T ss_pred ecCC--ccEEEEEecCCCCCCeEEEccC----CceEEEEEecCC------------CceeEEEeccceeEeecccccCCc
Confidence 5543 3456688999977767665542 234556666541 111211111122222348876666
Q ss_pred EEEEECCCCCCceEEEEECCCCC-CeEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECCCCc-eeeecccC
Q 003878 373 FTFLTNKDAPKYKIIRVDLKEPN-DWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGS-LLHQLPIE 449 (789)
Q Consensus 373 l~~~tn~~~~~~~L~~~dl~~~~-~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~-~~~~l~~~ 449 (789)
++++.. .+.-|..+|+..-. ...+|..+. -.+..+.+++. ..++++.+-|- .+++||+..+. .++....+
T Consensus 205 vl~Tg~---vd~~vr~wDir~~r~pl~eL~gh~--~AVRkvk~Sph~~~lLaSasYDm--T~riw~~~~~ds~~e~~~~H 277 (311)
T KOG0277|consen 205 VLATGG---VDNLVRGWDIRNLRTPLFELNGHG--LAVRKVKFSPHHASLLASASYDM--TVRIWDPERQDSAIETVDHH 277 (311)
T ss_pred EEEecC---CCceEEEEehhhccccceeecCCc--eEEEEEecCcchhhHhhhccccc--eEEecccccchhhhhhhhcc
Confidence 665443 34678888886643 233443333 55778888873 34777777665 45667765332 22344434
Q ss_pred CeeEEEeeccc
Q 003878 450 IGSVNAISARR 460 (789)
Q Consensus 450 ~~~v~~~s~s~ 460 (789)
..-+.++.++.
T Consensus 278 tEFv~g~Dws~ 288 (311)
T KOG0277|consen 278 TEFVCGLDWSL 288 (311)
T ss_pred ceEEecccccc
Confidence 33344555553
No 407
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=94.01 E-value=1.4 Score=47.03 Aligned_cols=150 Identities=10% Similarity=0.022 Sum_probs=84.0
Q ss_pred cEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccc
Q 003878 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRG 210 (789)
Q Consensus 131 ~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 210 (789)
.-.++-+.|.|-..-+..+. |. .++|.+||+.||+.+- ++.. |+
T Consensus 131 ~rrVg~V~wHPtA~NVLlsa---g~-Dn~v~iWnv~tgeali-~l~h----------------------pd--------- 174 (472)
T KOG0303|consen 131 QRRVGLVQWHPTAPNVLLSA---GS-DNTVSIWNVGTGEALI-TLDH----------------------PD--------- 174 (472)
T ss_pred ceeEEEEeecccchhhHhhc---cC-CceEEEEeccCCceee-ecCC----------------------CC---------
Confidence 34577778888766655432 22 5799999999997653 2221 11
Q ss_pred ceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcE
Q 003878 211 IFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDI 290 (789)
Q Consensus 211 ~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~ 290 (789)
...++.|+-||..|+-+..+ .+|++++..++.
T Consensus 175 -------------------------~i~S~sfn~dGs~l~TtckD-------------------KkvRv~dpr~~~---- 206 (472)
T KOG0303|consen 175 -------------------------MVYSMSFNRDGSLLCTTCKD-------------------KKVRVIDPRRGT---- 206 (472)
T ss_pred -------------------------eEEEEEeccCCceeeeeccc-------------------ceeEEEcCCCCc----
Confidence 24788999999998866543 357777766542
Q ss_pred EEEecCCCCee-EEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecC
Q 003878 291 LCWKDPEHPKY-IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIAND 369 (789)
Q Consensus 291 ~~~~~~~~~~~-~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~d 369 (789)
++.+...+... -..+-|-.+|+ ++-+...+. ....+-++|.+... ++..+..+-...+.-.++|.+|
T Consensus 207 ~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~-seRq~aLwdp~nl~----------eP~~~~elDtSnGvl~PFyD~d 274 (472)
T KOG0303|consen 207 VVSEGVAHEGAKPARAIFLASGK-IFTTGFSRM-SERQIALWDPNNLE----------EPIALQELDTSNGVLLPFYDPD 274 (472)
T ss_pred EeeecccccCCCcceeEEeccCc-eeeeccccc-cccceeccCccccc----------CcceeEEeccCCceEEeeecCC
Confidence 34333222111 12355677888 433322221 23445566655421 1333444433334456778887
Q ss_pred CCEEEEE
Q 003878 370 DTVFTFL 376 (789)
Q Consensus 370 G~~l~~~ 376 (789)
.+.+|+.
T Consensus 275 t~ivYl~ 281 (472)
T KOG0303|consen 275 TSIVYLC 281 (472)
T ss_pred CCEEEEE
Confidence 6666654
No 408
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=93.88 E-value=0.14 Score=52.05 Aligned_cols=74 Identities=19% Similarity=0.214 Sum_probs=46.3
Q ss_pred eecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC----CceeEEEec
Q 003878 575 NIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRP----DLFGCALAH 649 (789)
Q Consensus 575 ~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p----d~f~a~v~~ 649 (789)
=+||.......|.+........ ...-...|++||.+.--..++.|.+.|||-||.+|..++...+ +++..+.+.
T Consensus 42 aFRGTd~t~~~W~ed~~~~~~~-~~~~q~~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~f 119 (224)
T PF11187_consen 42 AFRGTDDTLVDWKEDFNMSFQD-ETPQQKSALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSF 119 (224)
T ss_pred EEECCCCchhhHHHHHHhhcCC-CCHHHHHHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEe
Confidence 4677755566787765443321 1223356666665442223456999999999999998888744 355566544
No 409
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.87 E-value=6.8 Score=44.45 Aligned_cols=137 Identities=9% Similarity=-0.049 Sum_probs=73.6
Q ss_pred EEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEee
Q 003878 276 EFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKL 355 (789)
Q Consensus 276 ~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l 355 (789)
.|.+|+....=. -..+|++. ..|+..+++.|...--+.++.- ...|-++.+... .+.-.+
T Consensus 120 ~iKlW~we~~wa-~~qtfeGH--~HyVMqv~fnPkD~ntFaS~sL----DrTVKVWslgs~-------------~~nfTl 179 (794)
T KOG0276|consen 120 TIKLWDWENEWA-CEQTFEGH--EHYVMQVAFNPKDPNTFASASL----DRTVKVWSLGSP-------------HPNFTL 179 (794)
T ss_pred EEEEeeccCcee-eeeEEcCc--ceEEEEEEecCCCccceeeeec----cccEEEEEcCCC-------------CCceee
Confidence 456666543322 23466654 5678899999855444433321 233666666542 112222
Q ss_pred ecc-ccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEE
Q 003878 356 IDG-FDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQI 434 (789)
Q Consensus 356 ~~~-~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~ 434 (789)
... .+..+..+-+-|+.=|+++.. ++.-|..+|..+..-.++|-.|. ..+..+.+.+.--++++.++||. +++
T Consensus 180 ~gHekGVN~Vdyy~~gdkpylIsga--DD~tiKvWDyQtk~CV~TLeGHt--~Nvs~v~fhp~lpiiisgsEDGT--vri 253 (794)
T KOG0276|consen 180 EGHEKGVNCVDYYTGGDKPYLISGA--DDLTIKVWDYQTKSCVQTLEGHT--NNVSFVFFHPELPIIISGSEDGT--VRI 253 (794)
T ss_pred eccccCcceEEeccCCCcceEEecC--CCceEEEeecchHHHHHHhhccc--ccceEEEecCCCcEEEEecCCcc--EEE
Confidence 221 111222233445555555543 45678888987765334443343 56677777764568899999984 555
Q ss_pred EECC
Q 003878 435 RDLK 438 (789)
Q Consensus 435 ~dl~ 438 (789)
|.-.
T Consensus 254 Whs~ 257 (794)
T KOG0276|consen 254 WNSK 257 (794)
T ss_pred ecCc
Confidence 5443
No 410
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.72 E-value=8.2 Score=45.68 Aligned_cols=218 Identities=9% Similarity=0.056 Sum_probs=121.0
Q ss_pred Eeeeccccceeeeeeec----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCC
Q 003878 217 LFSLVKSTIYSFWSVVS----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQ 286 (789)
Q Consensus 217 ~~~s~~~g~~~l~~~~~----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~ 286 (789)
..+|-.+|..|+|...| .-.+.++.|.|+.- ||++ .+..++|.+|+..+
T Consensus 24 ILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qp-lFVS------------------GGDDykIkVWnYk~-- 82 (1202)
T KOG0292|consen 24 ILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQP-LFVS------------------GGDDYKIKVWNYKT-- 82 (1202)
T ss_pred EEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCC-eEEe------------------cCCccEEEEEeccc--
Confidence 45667999999999888 22246788988764 4455 33456788888754
Q ss_pred CCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee---
Q 003878 287 SEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY--- 363 (789)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 363 (789)
...+|....+-.|+..+.|.+.=-||+-.+. ...|.+++..+++ .+..++. .. .|
T Consensus 83 --rrclftL~GHlDYVRt~~FHheyPWIlSASD-----DQTIrIWNwqsr~-------------~iavltG-Hn-HYVMc 140 (1202)
T KOG0292|consen 83 --RRCLFTLLGHLDYVRTVFFHHEYPWILSASD-----DQTIRIWNWQSRK-------------CIAVLTG-HN-HYVMC 140 (1202)
T ss_pred --ceehhhhccccceeEEeeccCCCceEEEccC-----CCeEEEEeccCCc-------------eEEEEec-Cc-eEEEe
Confidence 3566766667778888888888888764432 3457777776632 2222332 22 22
Q ss_pred EEEecCCCEEEEEECCCCCCceEEEEECCCCC----------------C-eEEeccCC----------CCceeeeEEEec
Q 003878 364 EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN----------------D-WFEVIPEA----------ERDVLESATAVN 416 (789)
Q Consensus 364 ~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~----------------~-~~~l~~~~----------~~~~i~~v~~~~ 416 (789)
+.|.|.. .+++....+ ..|-+||+.+-. . -..|++.. .+.-+.-+++.+
T Consensus 141 AqFhptE-DlIVSaSLD---QTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp 216 (1202)
T KOG0292|consen 141 AQFHPTE-DLIVSASLD---QTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP 216 (1202)
T ss_pred eccCCcc-ceEEEeccc---ceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC
Confidence 2255533 344444333 346666654310 0 01122211 112222234444
Q ss_pred CCEEEEEEEeCCeEEEEEEECCCCcee--eecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 417 LNQMIVSYLSDVKYVLQIRDLKNGSLL--HQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 417 ~~~lv~~~~~~g~~~L~~~dl~tG~~~--~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
.--+++++.+|-.-.+|+++-. +.. ...-.+...|+++-+.|..+. +++ -..-.++..||+...+
T Consensus 217 TlpliVSG~DDRqVKlWrmnet--KaWEvDtcrgH~nnVssvlfhp~q~l-IlS---nsEDksirVwDm~kRt 283 (1202)
T KOG0292|consen 217 TLPLIVSGADDRQVKLWRMNET--KAWEVDTCRGHYNNVSSVLFHPHQDL-ILS---NSEDKSIRVWDMTKRT 283 (1202)
T ss_pred CcceEEecCCcceeeEEEeccc--cceeehhhhcccCCcceEEecCccce-eEe---cCCCccEEEEeccccc
Confidence 3358888888875566666542 221 111223445666666665553 333 2455678888887664
No 411
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=93.65 E-value=22 Score=43.17 Aligned_cols=69 Identities=16% Similarity=0.127 Sum_probs=40.1
Q ss_pred CEEEEEEEeCC-eEEEEEEECCCCceeeecccCCeeEEE-eecccCCcEEEEEEcCC-CCCcEEEEEECCCC
Q 003878 418 NQMIVSYLSDV-KYVLQIRDLKNGSLLHQLPIEIGSVNA-ISARREDSVVFISFTSF-LIPGIVYQCNLKTE 486 (789)
Q Consensus 418 ~~lv~~~~~~g-~~~L~~~dl~tG~~~~~l~~~~~~v~~-~s~s~d~~~l~~~~ss~-~~P~~ly~~dl~tg 486 (789)
..+++....++ ..++..+....+.....++.+...+.. +..+.+++.++|....- -.-..+|.+++.+.
T Consensus 353 ~~~~~~~~~~~~~~hi~~~~~~~~~~~~~lt~g~w~v~~i~~~~~~~~~i~f~~~~~~~~~~~ly~i~~~~~ 424 (755)
T KOG2100|consen 353 SYLKVDSVSDGGYNHIAYLKLSNGSEPRMLTSGNWEVTSILGYDKDSNRIYFDAYEEDPSERHLYSISLGSG 424 (755)
T ss_pred ceeEEEeeccCCEEEEEEEEcCCCCccccccccceEEEEeccccCCCceEEEEecCCCCCceEEEEEEcccc
Confidence 44555555555 677877777655444566666555532 33455677777765432 23345666666555
No 412
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=93.63 E-value=19 Score=42.75 Aligned_cols=122 Identities=12% Similarity=0.007 Sum_probs=64.8
Q ss_pred eeEEEEEEecCCcEEEEEEEcCC---CCceEEEEEECCCCCCCcccccccCCCCccEeeecc--ccceeEEEecCCCEEE
Q 003878 300 KYIFSGHVTEDGQYLVMCIEENC---DPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG--FDAQYEVIANDDTVFT 374 (789)
Q Consensus 300 ~~~~~~~~SpDG~~l~~~~~~~~---~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~s~dG~~l~ 374 (789)
..+..+.+.+||+.+++...... .....+++++.+.+... ... ...+ .........-++..++
T Consensus 216 ~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----------~~~-~~~~~~~~~~~~~~~~~~~~~~ 283 (620)
T COG1506 216 GSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVD-----------GDL-SSGDDTRGAWAVEGGLDGDGLL 283 (620)
T ss_pred ceeeeeeeCCCCCeeEEeccCCccCccccceEEEEeccccccc-----------eee-ccCCcccCcHHhccccCCCcEE
Confidence 34567889999998887765443 22345666663332100 000 0000 0000011123566777
Q ss_pred EEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCC-eEEEEEEEC
Q 003878 375 FLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDV-KYVLQIRDL 437 (789)
Q Consensus 375 ~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g-~~~L~~~dl 437 (789)
+.+....+...++..+..+.. ..+.. .+...+.++.+.. +.+++..+... .+++++++.
T Consensus 284 ~~~~~~~g~~~l~~~~~~~~~--~~~~~-~~~~~v~~f~~~~-~~~~~~~s~~~~p~~i~~~~~ 343 (620)
T COG1506 284 FIATDGGGSSPLFRVDDLGGG--VEGLS-GDDGGVPGFDVDG-RKLALAYSSPTEPPEIYLYDR 343 (620)
T ss_pred EEEecCCCceEEEEEeccCCc--eeeec-CCCceEEEEeeCC-CEEEEEecCCCCccceEEEcC
Confidence 777664455666666544433 22222 2235677777744 67777776655 668999886
No 413
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.58 E-value=16 Score=41.56 Aligned_cols=158 Identities=15% Similarity=0.173 Sum_probs=86.5
Q ss_pred cEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEe
Q 003878 275 HEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVK 354 (789)
Q Consensus 275 ~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 354 (789)
.+|++++.+|. +.+..|+. |+.|+..++..|.--+++-++ + ...|-++|-+.. .. ...
T Consensus 77 ~~IrVfnynt~--ekV~~FeA--H~DyIR~iavHPt~P~vLtsS-D----Dm~iKlW~we~~------------wa-~~q 134 (794)
T KOG0276|consen 77 MQIRVFNYNTG--EKVKTFEA--HSDYIRSIAVHPTLPYVLTSS-D----DMTIKLWDWENE------------WA-CEQ 134 (794)
T ss_pred ceEEEEecccc--eeeEEeec--cccceeeeeecCCCCeEEecC-C----ccEEEEeeccCc------------ee-eee
Confidence 46888888875 34566664 577888999999888876433 2 244666666552 11 112
Q ss_pred eecccccee---EEEec-CCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEec-CCE-EEEEEEeCC
Q 003878 355 LIDGFDAQY---EVIAN-DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN-LNQ-MIVSYLSDV 428 (789)
Q Consensus 355 l~~~~~~~~---~~~s~-dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~-~~~-lv~~~~~~g 428 (789)
...+.. .| ..+-| |...|+- ... +..|-++.+.++..-.++-.|... +.-+...+ +++ .+++..+|-
T Consensus 135 tfeGH~-HyVMqv~fnPkD~ntFaS-~sL---DrTVKVWslgs~~~nfTl~gHekG--VN~Vdyy~~gdkpylIsgaDD~ 207 (794)
T KOG0276|consen 135 TFEGHE-HYVMQVAFNPKDPNTFAS-ASL---DRTVKVWSLGSPHPNFTLEGHEKG--VNCVDYYTGGDKPYLISGADDL 207 (794)
T ss_pred EEcCcc-eEEEEEEecCCCccceee-eec---cccEEEEEcCCCCCceeeeccccC--cceEEeccCCCcceEEecCCCc
Confidence 222211 12 12455 3344432 112 245666777665423455555533 34444443 233 445555553
Q ss_pred eEEEEEEECCCCceeeecccCCeeEEEeecccCCc
Q 003878 429 KYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDS 463 (789)
Q Consensus 429 ~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~ 463 (789)
.+.+||.++...++.|..+...|+.+.+.|.-.
T Consensus 208 --tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lp 240 (794)
T KOG0276|consen 208 --TIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELP 240 (794)
T ss_pred --eEEEeecchHHHHHHhhcccccceEEEecCCCc
Confidence 689999997776677765544455555544433
No 414
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=93.52 E-value=10 Score=39.13 Aligned_cols=166 Identities=14% Similarity=0.097 Sum_probs=82.4
Q ss_pred EEECCCCCC---CcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccC-CCCccEe
Q 003878 279 YHFLGTKQS---EDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRD-GLLPFVK 354 (789)
Q Consensus 279 ~~~lg~~~~---~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~-~~~~~~~ 354 (789)
+|++.++.. +.++|..+. -+..++|+.+|..++.+... ...+.++|+...+-. .-+.++. +..++.+
T Consensus 177 iWdie~~~~~~vkTQLIAHDK----EV~DIaf~~~s~~~FASvga----DGSvRmFDLR~leHS-TIIYE~p~~~~pLlR 247 (364)
T KOG0290|consen 177 IWDIETGVSGTVKTQLIAHDK----EVYDIAFLKGSRDVFASVGA----DGSVRMFDLRSLEHS-TIIYEDPSPSTPLLR 247 (364)
T ss_pred EEEEeeccccceeeEEEecCc----ceeEEEeccCccceEEEecC----CCcEEEEEecccccc-eEEecCCCCCCccee
Confidence 445554432 445665433 35678999999988877643 234777787653210 0011100 0111111
Q ss_pred eeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCC-eEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEEE
Q 003878 355 LIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND-WFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVL 432 (789)
Q Consensus 355 l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~-~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L 432 (789)
+. |.+ +...++..-.....+|..+|+.-+.. ..+|--|. ..+.+++|.+. ..-+.+..+| .+.
T Consensus 248 Ls---------wnk--qDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~--a~VNgIaWaPhS~~hictaGDD--~qa 312 (364)
T KOG0290|consen 248 LS---------WNK--QDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQ--ASVNGIAWAPHSSSHICTAGDD--CQA 312 (364)
T ss_pred ec---------cCc--CCchHHhhhhcCCceEEEEEecCCCcceehhhcCc--ccccceEecCCCCceeeecCCc--ceE
Confidence 11 222 11222221122346788888877652 22332333 56789999984 3344455555 378
Q ss_pred EEEECCCCceeeecccC------CeeEEEeeccc-CCcEEEEEE
Q 003878 433 QIRDLKNGSLLHQLPIE------IGSVNAISARR-EDSVVFISF 469 (789)
Q Consensus 433 ~~~dl~tG~~~~~l~~~------~~~v~~~s~s~-d~~~l~~~~ 469 (789)
.+||+..- ....+..| .+.|..+.|++ ..+.+.+.+
T Consensus 313 liWDl~q~-~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 313 LIWDLQQM-PRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICF 355 (364)
T ss_pred EEEecccc-cccCCCCchhhhhccceeeeeeecccCCCEEEEEe
Confidence 88998631 11122222 34566666653 234455444
No 415
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=93.50 E-value=0.18 Score=35.45 Aligned_cols=29 Identities=21% Similarity=0.197 Sum_probs=20.6
Q ss_pred EEEEEEecCCcEEEEEEEcCCCCceEEEE
Q 003878 302 IFSGHVTEDGQYLVMCIEENCDPVNKVYY 330 (789)
Q Consensus 302 ~~~~~~SpDG~~l~~~~~~~~~~~~~i~~ 330 (789)
...+.|||||++|+|.+........+||+
T Consensus 11 ~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 11 DGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp EEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred ccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 35789999999999999876223566774
No 416
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=93.46 E-value=26 Score=43.53 Aligned_cols=115 Identities=9% Similarity=0.093 Sum_probs=67.0
Q ss_pred EEEEEecCCcEEEEEEEcCCCC-ceEEEEEECCCCCCCcccccccCCCCccEee---eccccceeEEEecCCCEEEEEEC
Q 003878 303 FSGHVTEDGQYLVMCIEENCDP-VNKVYYCDLSALPEGLEGFKKRDGLLPFVKL---IDGFDAQYEVIANDDTVFTFLTN 378 (789)
Q Consensus 303 ~~~~~SpDG~~l~~~~~~~~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~s~dG~~l~~~tn 378 (789)
..++|-.||+|++++....... ...+.+++-++ . +... +.+.. ....|.|.|..|+-...
T Consensus 213 ~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG-~--------------L~stSE~v~gLe-~~l~WrPsG~lIA~~q~ 276 (928)
T PF04762_consen 213 VRISWRGDGEYFAVSSVEPETGSRRVIRVYSREG-E--------------LQSTSEPVDGLE-GALSWRPSGNLIASSQR 276 (928)
T ss_pred eEEEECCCCcEEEEEEEEcCCCceeEEEEECCCc-e--------------EEeccccCCCcc-CCccCCCCCCEEEEEEE
Confidence 4689999999999988643322 45566676553 1 1111 11221 12348999987776554
Q ss_pred CCCCCceEEEEECCCCC--CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECC
Q 003878 379 KDAPKYKIIRVDLKEPN--DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLK 438 (789)
Q Consensus 379 ~~~~~~~L~~~dl~~~~--~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~ 438 (789)
...+..|..+.-++-. .+..-. ......+..+.|+.+..+++....+. |.+|...
T Consensus 277 -~~~~~~VvFfErNGLrhgeF~l~~-~~~~~~v~~l~Wn~ds~iLAv~~~~~---vqLWt~~ 333 (928)
T PF04762_consen 277 -LPDRHDVVFFERNGLRHGEFTLRF-DPEEEKVIELAWNSDSEILAVWLEDR---VQLWTRS 333 (928)
T ss_pred -cCCCcEEEEEecCCcEeeeEecCC-CCCCceeeEEEECCCCCEEEEEecCC---ceEEEee
Confidence 3445677777654421 122111 12245678999998766776666553 6666543
No 417
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=93.43 E-value=11 Score=39.03 Aligned_cols=205 Identities=13% Similarity=0.070 Sum_probs=105.0
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCc-EEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQ-YLV 315 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~-~l~ 315 (789)
..++.|-|=..++|.+ +...+.+.+|+..|-+.. ..|.-++ .+.+-++||=.- ..+
T Consensus 104 iss~~WyP~DtGmFts------------------sSFDhtlKVWDtnTlQ~a--~~F~me~---~VYshamSp~a~sHcL 160 (397)
T KOG4283|consen 104 ISSAIWYPIDTGMFTS------------------SSFDHTLKVWDTNTLQEA--VDFKMEG---KVYSHAMSPMAMSHCL 160 (397)
T ss_pred eeeeEEeeecCceeec------------------ccccceEEEeecccceee--EEeecCc---eeehhhcChhhhcceE
Confidence 4778898877777754 456677899998876543 3343322 244567777433 444
Q ss_pred EEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEE-EecCCCEEEEEECCCCCCceEEEEECCCC
Q 003878 316 MCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEV-IANDDTVFTFLTNKDAPKYKIIRVDLKEP 394 (789)
Q Consensus 316 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~dG~~l~~~tn~~~~~~~L~~~dl~~~ 394 (789)
+.+..+ ...|.+.|++.|... -.+....+....+ |+|..++++.... .++.+-.+|+...
T Consensus 161 iA~gtr---~~~VrLCDi~SGs~s-------------H~LsGHr~~vlaV~Wsp~~e~vLatgs---aDg~irlWDiRra 221 (397)
T KOG4283|consen 161 IAAGTR---DVQVRLCDIASGSFS-------------HTLSGHRDGVLAVEWSPSSEWVLATGS---ADGAIRLWDIRRA 221 (397)
T ss_pred EEEecC---CCcEEEEeccCCcce-------------eeeccccCceEEEEeccCceeEEEecC---CCceEEEEEeecc
Confidence 444322 356889999886311 1233333433333 9997665554332 2355666665432
Q ss_pred C-CeEEeccCC------------CCceeeeEEEecCC-EEEEEEEeCCeEEEEEEECCCCceeeeccc-C-------Cee
Q 003878 395 N-DWFEVIPEA------------ERDVLESATAVNLN-QMIVSYLSDVKYVLQIRDLKNGSLLHQLPI-E-------IGS 452 (789)
Q Consensus 395 ~-~~~~l~~~~------------~~~~i~~v~~~~~~-~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~-~-------~~~ 452 (789)
. .+..+--+. ....+.+++|+.++ ++..... .+++.+|+...|+. ...+. + .-.
T Consensus 222 sgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt---d~r~r~wn~~~G~n-tl~~~g~~~~n~~~~~~ 297 (397)
T KOG4283|consen 222 SGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT---DDRIRVWNMESGRN-TLREFGPIIHNQTTSFA 297 (397)
T ss_pred cceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC---ccceEEeecccCcc-cccccccccccccccce
Confidence 1 011111110 01345667777632 2332222 24788898877764 11111 1 001
Q ss_pred EEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCCceEEEee
Q 003878 453 VNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFR 494 (789)
Q Consensus 453 v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~l~ 494 (789)
+. +. +-+.+.+.+.- .. +.+++|++-.++ ..+.|.
T Consensus 298 ~~-~~-~~~s~vfv~~p---~~-~~lall~~~sgs-~ir~l~ 332 (397)
T KOG4283|consen 298 VH-IQ-SMDSDVFVLFP---ND-GSLALLNLLEGS-FVRRLS 332 (397)
T ss_pred EE-Ee-ecccceEEEEe---cC-CeEEEEEccCce-EEEeee
Confidence 11 12 33444333221 12 788888887775 344444
No 418
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=93.30 E-value=3.9 Score=46.05 Aligned_cols=149 Identities=13% Similarity=0.103 Sum_probs=88.7
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
..++.|.-+|++|+.+... .....|++|.|.....+ ..|.... ..+..+.|.|.--++++
T Consensus 524 i~~vtWHrkGDYlatV~~~----------------~~~~~VliHQLSK~~sQ--~PF~ksk--G~vq~v~FHPs~p~lfV 583 (733)
T KOG0650|consen 524 IRQVTWHRKGDYLATVMPD----------------SGNKSVLIHQLSKRKSQ--SPFRKSK--GLVQRVKFHPSKPYLFV 583 (733)
T ss_pred cceeeeecCCceEEEeccC----------------CCcceEEEEeccccccc--CchhhcC--CceeEEEecCCCceEEE
Confidence 4789999999999977532 34456899988644332 2332222 23456789999999988
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc-cceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF-DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
.+ ...|.++|+.... ...++..+. ....-.+.|.|+.|++.++. .+++-+|++-..
T Consensus 584 aT------q~~vRiYdL~kqe-------------lvKkL~tg~kwiS~msihp~GDnli~gs~d----~k~~WfDldlss 640 (733)
T KOG0650|consen 584 AT------QRSVRIYDLSKQE-------------LVKKLLTGSKWISSMSIHPNGDNLILGSYD----KKMCWFDLDLSS 640 (733)
T ss_pred Ee------ccceEEEehhHHH-------------HHHHHhcCCeeeeeeeecCCCCeEEEecCC----CeeEEEEcccCc
Confidence 76 3457788886521 122222221 11223367889998876554 578888876542
Q ss_pred -CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeE
Q 003878 396 -DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKY 430 (789)
Q Consensus 396 -~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~ 430 (789)
.++.+--+. ..+.++++.+.=-|+.+.+++|.-
T Consensus 641 kPyk~lr~H~--~avr~Va~H~ryPLfas~sdDgtv 674 (733)
T KOG0650|consen 641 KPYKTLRLHE--KAVRSVAFHKRYPLFASGSDDGTV 674 (733)
T ss_pred chhHHhhhhh--hhhhhhhhccccceeeeecCCCcE
Confidence 244443333 345666666522366666666643
No 419
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=92.88 E-value=6.1 Score=41.00 Aligned_cols=107 Identities=13% Similarity=0.021 Sum_probs=67.5
Q ss_pred EEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCC--EEEEEEEeCCeEEEEEEECCCCc
Q 003878 364 EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLN--QMIVSYLSDVKYVLQIRDLKNGS 441 (789)
Q Consensus 364 ~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~--~lv~~~~~~g~~~L~~~dl~tG~ 441 (789)
..|+.||..++.- +-+..+-.+||.+++ ...+-.|. ..+..+.|.++. .+++..+.|- .|..||...-.
T Consensus 78 v~WsddgskVf~g----~~Dk~~k~wDL~S~Q-~~~v~~Hd--~pvkt~~wv~~~~~~cl~TGSWDK--TlKfWD~R~~~ 148 (347)
T KOG0647|consen 78 VCWSDDGSKVFSG----GCDKQAKLWDLASGQ-VSQVAAHD--APVKTCHWVPGMNYQCLVTGSWDK--TLKFWDTRSSN 148 (347)
T ss_pred EEEccCCceEEee----ccCCceEEEEccCCC-eeeeeecc--cceeEEEEecCCCcceeEeccccc--ceeecccCCCC
Confidence 3499999776642 234678889999986 55565565 567888888742 3677777775 79999998666
Q ss_pred eeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 442 LLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 442 ~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
.+..+.+|.... .+.. --..+.+.. --..|..|++..+
T Consensus 149 pv~t~~LPeRvY-a~Dv--~~pm~vVat----a~r~i~vynL~n~ 186 (347)
T KOG0647|consen 149 PVATLQLPERVY-AADV--LYPMAVVAT----AERHIAVYNLENP 186 (347)
T ss_pred eeeeeeccceee-ehhc--cCceeEEEe----cCCcEEEEEcCCC
Confidence 667777774422 2221 122223322 2245667777655
No 420
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=92.87 E-value=2.1 Score=48.57 Aligned_cols=156 Identities=16% Similarity=0.123 Sum_probs=83.5
Q ss_pred eEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeE-EEecCCCEEEEEECC
Q 003878 301 YIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYE-VIANDDTVFTFLTNK 379 (789)
Q Consensus 301 ~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dG~~l~~~tn~ 379 (789)
.+..+++-|||..|++.+ .++++++|..+|. .+.++...-+..+. .|++||++|+ .
T Consensus 14 ci~d~afkPDGsqL~lAA------g~rlliyD~ndG~-------------llqtLKgHKDtVycVAys~dGkrFA----S 70 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA------GSRLLVYDTSDGT-------------LLQPLKGHKDTVYCVAYAKDGKRFA----S 70 (1081)
T ss_pred chheeEECCCCceEEEec------CCEEEEEeCCCcc-------------cccccccccceEEEEEEccCCceec----c
Confidence 345789999999999876 3679999998752 13334333333443 3888888765 2
Q ss_pred CCCCceEEEEECC-------------------------------CCCCe----EEeccCCCCceeeeEEEecCCEEEEEE
Q 003878 380 DAPKYKIIRVDLK-------------------------------EPNDW----FEVIPEAERDVLESATAVNLNQMIVSY 424 (789)
Q Consensus 380 ~~~~~~L~~~dl~-------------------------------~~~~~----~~l~~~~~~~~i~~v~~~~~~~lv~~~ 424 (789)
++.+--++.|+.+ ...-| +.+..+.....+.+.+|+.|+..++.+
T Consensus 71 G~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG 150 (1081)
T KOG1538|consen 71 GSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALG 150 (1081)
T ss_pred CCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEe
Confidence 2222233333211 00001 112222222345677899878888888
Q ss_pred EeCCeEEEEEEECCCCceeeecccC---CeeEEEeecccCC---cEEEEEEcCCCCCcEEEEEE
Q 003878 425 LSDVKYVLQIRDLKNGSLLHQLPIE---IGSVNAISARRED---SVVFISFTSFLIPGIVYQCN 482 (789)
Q Consensus 425 ~~~g~~~L~~~dl~tG~~~~~l~~~---~~~v~~~s~s~d~---~~l~~~~ss~~~P~~ly~~d 482 (789)
.-+|. |.+-+. +|+....|.-| ...|.++.++|.+ ..=.+..-.|.+.-..|.++
T Consensus 151 ~~nGT--IsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls 211 (1081)
T KOG1538|consen 151 MFNGT--ISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS 211 (1081)
T ss_pred ccCce--EEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec
Confidence 88874 433344 46654555543 3334455555432 22223334555544444443
No 421
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.76 E-value=11 Score=37.99 Aligned_cols=64 Identities=16% Similarity=0.047 Sum_probs=38.1
Q ss_pred ceeeeEEEecC----CEEEEEEEeCCeEEEEEEECCCCceeeecccC-CeeEEEeecccCCcEEEEEEc
Q 003878 407 DVLESATAVNL----NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAISARREDSVVFISFT 470 (789)
Q Consensus 407 ~~i~~v~~~~~----~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~-~~~v~~~s~s~d~~~l~~~~s 470 (789)
..+.+++|.|. ...+++.++++.--|+..+.+.+.....+-.+ ...+-.+++|..|+.|.++..
T Consensus 208 dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~G 276 (299)
T KOG1332|consen 208 DWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGG 276 (299)
T ss_pred hhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecC
Confidence 45677887763 35678888888555555554323222222112 233556788888988877654
No 422
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.45 E-value=7.7 Score=38.95 Aligned_cols=100 Identities=11% Similarity=0.172 Sum_probs=58.1
Q ss_pred EEecCCCEEEEEECCCCCCceEEEEE--CCCCC--CeEEeccCC-----CCceeeeEEEecCCEEEEEEEeCCeEEEEEE
Q 003878 365 VIANDDTVFTFLTNKDAPKYKIIRVD--LKEPN--DWFEVIPEA-----ERDVLESATAVNLNQMIVSYLSDVKYVLQIR 435 (789)
Q Consensus 365 ~~s~dG~~l~~~tn~~~~~~~L~~~d--l~~~~--~~~~l~~~~-----~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~ 435 (789)
.|+.|-+.+|++-. -++.|-.+| ..++. +.+.++.-. +...-.++.+..++.|++..-..+ +++.+
T Consensus 164 ~Wd~d~K~fY~iDs---ln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~--~V~~~ 238 (310)
T KOG4499|consen 164 AWDSDAKKFYYIDS---LNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGG--TVQKV 238 (310)
T ss_pred cccccCcEEEEEcc---CceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCc--EEEEE
Confidence 38878888888643 357774444 65553 112221110 011113455554467777666554 79999
Q ss_pred ECCCCceeeecccCCeeEEEeecc-cCCcEEEEEE
Q 003878 436 DLKNGSLLHQLPIEIGSVNAISAR-REDSVVFISF 469 (789)
Q Consensus 436 dl~tG~~~~~l~~~~~~v~~~s~s-~d~~~l~~~~ 469 (789)
|+.+|+.+.++.+|.-.+++..+- ++-+.++++.
T Consensus 239 dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 239 DPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred CCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence 999999888888885556555442 2234455443
No 423
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.29 E-value=3.5 Score=41.29 Aligned_cols=16 Identities=38% Similarity=0.962 Sum_probs=14.2
Q ss_pred ceEEEEeCCcEEEEEE
Q 003878 238 SSIAWTHDSKGFFYSR 253 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~ 253 (789)
.+++|+-|.|.+||+-
T Consensus 161 Ngl~Wd~d~K~fY~iD 176 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYID 176 (310)
T ss_pred ccccccccCcEEEEEc
Confidence 6799999999999983
No 424
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.14 E-value=0.66 Score=53.05 Aligned_cols=42 Identities=21% Similarity=0.319 Sum_probs=31.8
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSW 177 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~ 177 (789)
+...|.++.++++...|| .|....+|++|||+.++++. ++.+
T Consensus 69 hespIeSl~f~~~E~Lla-----agsasgtiK~wDleeAk~vr-tLtg 110 (825)
T KOG0267|consen 69 HESPIESLTFDTSERLLA-----AGSASGTIKVWDLEEAKIVR-TLTG 110 (825)
T ss_pred cCCcceeeecCcchhhhc-----ccccCCceeeeehhhhhhhh-hhhc
Confidence 345678899999998888 45556699999999987664 4443
No 425
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=92.14 E-value=12 Score=40.72 Aligned_cols=74 Identities=12% Similarity=0.123 Sum_probs=44.2
Q ss_pred ccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEE
Q 003878 236 KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLV 315 (789)
Q Consensus 236 ~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~ 315 (789)
++..+.|.|-.-.+..+ ..+..++.+.+..... +.-.-|.. ...+..+.|.|-....+
T Consensus 288 ~Vq~l~wh~~~p~~LLs------------------Gs~D~~V~l~D~R~~~-~s~~~wk~---~g~VEkv~w~~~se~~f 345 (463)
T KOG0270|consen 288 KVQTLEWHPYEPSVLLS------------------GSYDGTVALKDCRDPS-NSGKEWKF---DGEVEKVAWDPHSENSF 345 (463)
T ss_pred ceeEEEecCCCceEEEe------------------ccccceEEeeeccCcc-ccCceEEe---ccceEEEEecCCCceeE
Confidence 46899999977776665 2344456666665321 11111221 11245678888887777
Q ss_pred EEEEcCCCCceEEEEEECCC
Q 003878 316 MCIEENCDPVNKVYYCDLSA 335 (789)
Q Consensus 316 ~~~~~~~~~~~~i~~~d~~~ 335 (789)
+.+.+ ...||.+|+..
T Consensus 346 ~~~td----dG~v~~~D~R~ 361 (463)
T KOG0270|consen 346 FVSTD----DGTVYYFDIRN 361 (463)
T ss_pred EEecC----CceEEeeecCC
Confidence 76643 34588888876
No 426
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=92.13 E-value=0.18 Score=51.13 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=18.1
Q ss_pred CcEEEEeeChHHHHHHHHHHh
Q 003878 618 RKLCIEGGSNGGLLVGACINQ 638 (789)
Q Consensus 618 ~~i~i~G~S~GG~l~~~~~~~ 638 (789)
.+|.++|||+||+++-.++..
T Consensus 78 ~~IsfIgHSLGGli~r~al~~ 98 (217)
T PF05057_consen 78 RKISFIGHSLGGLIARYALGL 98 (217)
T ss_pred ccceEEEecccHHHHHHHHHH
Confidence 589999999999998777663
No 427
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=92.12 E-value=3.4 Score=45.88 Aligned_cols=97 Identities=15% Similarity=0.123 Sum_probs=60.4
Q ss_pred EEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCcee
Q 003878 364 EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLL 443 (789)
Q Consensus 364 ~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~ 443 (789)
..|.|+...++|.. ..+++.-+++.....-.--.|+ ..+-.++|+....++++..+|- +..+||-. |..+
T Consensus 151 ~~W~p~S~~vl~c~-----g~h~~IKpL~~n~k~i~WkAHD--GiiL~~~W~~~s~lI~sgGED~--kfKvWD~~-G~~L 220 (737)
T KOG1524|consen 151 ARWAPNSNSIVFCQ-----GGHISIKPLAANSKIIRWRAHD--GLVLSLSWSTQSNIIASGGEDF--RFKIWDAQ-GANL 220 (737)
T ss_pred EEECCCCCceEEec-----CCeEEEeecccccceeEEeccC--cEEEEeecCccccceeecCCce--eEEeeccc-Cccc
Confidence 34889887776632 2467766665443111112343 5677888987667888877775 67788876 6543
Q ss_pred eecccCCeeEEEeecccCCcEEEEEEc
Q 003878 444 HQLPIEIGSVNAISARREDSVVFISFT 470 (789)
Q Consensus 444 ~~l~~~~~~v~~~s~s~d~~~l~~~~s 470 (789)
..-..+...+.+++|.||...++-++.
T Consensus 221 f~S~~~ey~ITSva~npd~~~~v~S~n 247 (737)
T KOG1524|consen 221 FTSAAEEYAITSVAFNPEKDYLLWSYN 247 (737)
T ss_pred ccCChhccceeeeeeccccceeeeeee
Confidence 322334677888999998555554443
No 428
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=91.87 E-value=15 Score=37.99 Aligned_cols=119 Identities=17% Similarity=0.130 Sum_probs=75.3
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCcee-cccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVE-ADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
.+.-+.|-|++++||-.. ...|.+|+++.+..+ +......
T Consensus 125 ~i~cvew~Pns~klasm~------dn~i~l~~l~ess~~vaev~ss~--------------------------------- 165 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMD------DNNIVLWSLDESSKIVAEVLSSE--------------------------------- 165 (370)
T ss_pred ceeeEEEcCCCCeeEEec------cCceEEEEcccCcchheeecccc---------------------------------
Confidence 466788999999999654 357999999887542 2111110
Q ss_pred eeeEEEeeeccccceeeeeeecccccceEEEEe--CCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCc
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTH--DSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED 289 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wsp--Dg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~ 289 (789)
..+ ++.++.+-+||| ||..++.+.. ..++.+++.|....
T Consensus 166 ----------s~e--------~~~~ftsg~WspHHdgnqv~tt~d--------------------~tl~~~D~RT~~~~- 206 (370)
T KOG1007|consen 166 ----------SAE--------MRHSFTSGAWSPHHDGNQVATTSD--------------------STLQFWDLRTMKKN- 206 (370)
T ss_pred ----------ccc--------ccceecccccCCCCccceEEEeCC--------------------CcEEEEEccchhhh-
Confidence 000 011367889998 8888886522 24778888764321
Q ss_pred EEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCC
Q 003878 290 ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSA 335 (789)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~ 335 (789)
...+. .+...+.++.+.|+-++++.+..+ ...|.++|...
T Consensus 207 -~sI~d-AHgq~vrdlDfNpnkq~~lvt~gD----dgyvriWD~R~ 246 (370)
T KOG1007|consen 207 -NSIED-AHGQRVRDLDFNPNKQHILVTCGD----DGYVRIWDTRK 246 (370)
T ss_pred -cchhh-hhcceeeeccCCCCceEEEEEcCC----CccEEEEeccC
Confidence 11122 223445678899999999887744 34577888765
No 429
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=91.82 E-value=6.7 Score=41.85 Aligned_cols=125 Identities=16% Similarity=0.225 Sum_probs=74.0
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCc--eecccccccccccccCccceeeeeeccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI--VEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLY 207 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 207 (789)
++.-+..+++|.+|++|| +|++....+||.++--. .++..|.-. + +||-+
T Consensus 55 H~GCiNAlqFS~N~~~L~-----SGGDD~~~~~W~~de~~~~k~~KPI~~~-~--~~H~S-------------------- 106 (609)
T KOG4227|consen 55 HTGCINALQFSHNDRFLA-----SGGDDMHGRVWNVDELMVRKTPKPIGVM-E--HPHRS-------------------- 106 (609)
T ss_pred hccccceeeeccCCeEEe-----ecCCcceeeeechHHHHhhcCCCCceec-c--Ccccc--------------------
Confidence 445678899999999998 67788899999876431 111111111 0 11101
Q ss_pred cccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCC
Q 003878 208 LRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQS 287 (789)
Q Consensus 208 ~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~ 287 (789)
....++|.- +.+++|+ ..+..+|.+|++.+++.
T Consensus 107 ----------------------------NIF~L~F~~-~N~~~~S------------------G~~~~~VI~HDiEt~qs 139 (609)
T KOG4227|consen 107 ----------------------------NIFSLEFDL-ENRFLYS------------------GERWGTVIKHDIETKQS 139 (609)
T ss_pred ----------------------------ceEEEEEcc-CCeeEec------------------CCCcceeEeeeccccee
Confidence 124556643 4556665 33445788999988654
Q ss_pred CcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCC
Q 003878 288 EDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSAL 336 (789)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g 336 (789)
+-|+...++...+..+..+|-...++..+. ...|.++|....
T Consensus 140 --i~V~~~~~~~~~VY~m~~~P~DN~~~~~t~-----~~~V~~~D~Rd~ 181 (609)
T KOG4227|consen 140 --IYVANENNNRGDVYHMDQHPTDNTLIVVTR-----AKLVSFIDNRDR 181 (609)
T ss_pred --eeeecccCcccceeecccCCCCceEEEEec-----CceEEEEeccCC
Confidence 445555554444556777887666555442 244677777653
No 430
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.60 E-value=18 Score=37.72 Aligned_cols=109 Identities=17% Similarity=0.213 Sum_probs=56.4
Q ss_pred EEEecCCCEEEEEECCCCCCceEEEEECCCCC-CeE-EeccCCC----CceeeeEEEec-CCEEEEEEEeCCeEEEEEEE
Q 003878 364 EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN-DWF-EVIPEAE----RDVLESATAVN-LNQMIVSYLSDVKYVLQIRD 436 (789)
Q Consensus 364 ~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~-~~~-~l~~~~~----~~~i~~v~~~~-~~~lv~~~~~~g~~~L~~~d 436 (789)
-.|++.++.|++.-.++ | ..|+.++..... ... ...+... -..++++.+.+ .+++++.+.+.. .|..+|
T Consensus 186 lA~d~~~~~l~~aKEr~-P-~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr--~l~Evd 261 (316)
T COG3204 186 LAWDPVDHRLFVAKERN-P-IGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESR--RLLEVD 261 (316)
T ss_pred eecCCCCceEEEEEccC-C-cEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCc--eEEEEe
Confidence 35889888999887775 3 578888743211 000 1111111 01244555553 267777666554 566677
Q ss_pred CCCCceeeecccC---------CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEE
Q 003878 437 LKNGSLLHQLPIE---------IGSVNAISARREDSVVFISFTSFLIPGIVYQCN 482 (789)
Q Consensus 437 l~tG~~~~~l~~~---------~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~d 482 (789)
++ |+.+..+.+. .-...+++.+.++. +++. ..|+-.|++.
T Consensus 262 ~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~-lYIv----SEPnlfy~F~ 310 (316)
T COG3204 262 LS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN-LYIV----SEPNLFYRFT 310 (316)
T ss_pred cC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCC-EEEE----ecCCcceecc
Confidence 75 6543444332 11233555665555 4433 3466666653
No 431
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=91.57 E-value=0.38 Score=54.02 Aligned_cols=140 Identities=14% Similarity=0.081 Sum_probs=76.8
Q ss_pred EEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCC---------------------HHHHHHHHcCCe
Q 003878 511 VFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFS---------------------VSRTILMRHLGA 569 (789)
Q Consensus 511 ~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~---------------------~~~~~~l~~~G~ 569 (789)
+.+....+ ..+-.|++...+ .....|+||++-||||.+...++. ..-..|.. =.
T Consensus 42 ~~v~~~~~-~~lfy~f~es~~--~~~~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~~--~a 116 (433)
T PLN03016 42 IGIGEDEN-VQFFYYFIKSEN--NPKEDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWTK--MA 116 (433)
T ss_pred EEecCCCC-eEEEEEEEecCC--CcccCCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeCCCchhh--cC
Confidence 33333345 566666665443 245789999999999876521110 00122332 24
Q ss_pred EEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHH-HHHHcCCCCCCcEEEEeeChHHHHHHHHHH----hC-----
Q 003878 570 VFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASE-YLISAGYTQSRKLCIEGGSNGGLLVGACIN----QR----- 639 (789)
Q Consensus 570 ~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~-~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~----~~----- 639 (789)
.++.+|..-|.+|...-.... ........+|+..++. |+.....-..+.+.|.|.|+||..+-.++. ..
T Consensus 117 nllfiDqPvGtGfSy~~~~~~-~~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~ 195 (433)
T PLN03016 117 NIIFLDQPVGSGFSYSKTPID-KTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCE 195 (433)
T ss_pred cEEEecCCCCCCccCCCCCCC-ccCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccC
Confidence 567777665555542111110 0111122356665544 344444334578999999999975544432 21
Q ss_pred -CCceeEEEecCCccccc
Q 003878 640 -PDLFGCALAHVGVMDML 656 (789)
Q Consensus 640 -pd~f~a~v~~~p~~d~~ 656 (789)
+=-+++++...|++|+.
T Consensus 196 ~~inLkGi~iGNg~t~~~ 213 (433)
T PLN03016 196 PPINLQGYMLGNPVTYMD 213 (433)
T ss_pred CcccceeeEecCCCcCch
Confidence 11578999999988764
No 432
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=91.22 E-value=11 Score=43.46 Aligned_cols=69 Identities=10% Similarity=0.030 Sum_probs=43.4
Q ss_pred ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcE
Q 003878 234 QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQY 313 (789)
Q Consensus 234 ~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~ 313 (789)
.+....++-||+|+-|+-..+-. ......|++|..++=.....+ +.|...+..+.|||||++
T Consensus 525 GyEv~~l~~s~~gnliASaCKS~--------------~~ehAvI~lw~t~~W~~~~~L----~~HsLTVT~l~FSpdg~~ 586 (764)
T KOG1063|consen 525 GYEVYALAISPTGNLIASACKSS--------------LKEHAVIRLWNTANWLQVQEL----EGHSLTVTRLAFSPDGRY 586 (764)
T ss_pred ceeEEEEEecCCCCEEeehhhhC--------------CccceEEEEEeccchhhhhee----cccceEEEEEEECCCCcE
Confidence 44456788899988777543322 223445888876653322222 234555678999999999
Q ss_pred EEEEEEc
Q 003878 314 LVMCIEE 320 (789)
Q Consensus 314 l~~~~~~ 320 (789)
|+-.+.+
T Consensus 587 LLsvsRD 593 (764)
T KOG1063|consen 587 LLSVSRD 593 (764)
T ss_pred EEEeecC
Confidence 9876644
No 433
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=91.19 E-value=48 Score=41.28 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=23.4
Q ss_pred eEEeCCCCcEEEEEEecCC-ceEEEEEEEEcC
Q 003878 136 KVSVSEDAKYLAYALSYSG-SDWATIKLMRIE 166 (789)
Q Consensus 136 ~~~~SpDg~~la~~~~~~g-~~~~~i~v~dl~ 166 (789)
.++|-.||+++|.+.-... +....|+||+-+
T Consensus 214 ~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re 245 (928)
T PF04762_consen 214 RISWRGDGEYFAVSSVEPETGSRRVIRVYSRE 245 (928)
T ss_pred EEEECCCCcEEEEEEEEcCCCceeEEEEECCC
Confidence 5678999999998764222 247899999976
No 434
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=90.95 E-value=17 Score=36.64 Aligned_cols=112 Identities=16% Similarity=0.088 Sum_probs=60.9
Q ss_pred ecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEE
Q 003878 308 TEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKII 387 (789)
Q Consensus 308 SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~ 387 (789)
.++++++++... ...|+.+|..+|+ ..|..-..+.. .... ..++..+|+.+. +.+|+
T Consensus 33 ~~~~~~v~~~~~-----~~~l~~~d~~tG~------------~~W~~~~~~~~-~~~~-~~~~~~v~v~~~----~~~l~ 89 (238)
T PF13360_consen 33 VPDGGRVYVASG-----DGNLYALDAKTGK------------VLWRFDLPGPI-SGAP-VVDGGRVYVGTS----DGSLY 89 (238)
T ss_dssp EEETTEEEEEET-----TSEEEEEETTTSE------------EEEEEECSSCG-GSGE-EEETTEEEEEET----TSEEE
T ss_pred EEeCCEEEEEcC-----CCEEEEEECCCCC------------EEEEeeccccc-ccee-eecccccccccc----eeeeE
Confidence 446667766531 4668999988763 11322222111 1111 234677877762 23899
Q ss_pred EEECCCCC-CeE-EeccCCCC--ceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeec
Q 003878 388 RVDLKEPN-DWF-EVIPEAER--DVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQL 446 (789)
Q Consensus 388 ~~dl~~~~-~~~-~l~~~~~~--~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l 446 (789)
.+|+.+++ .|+ ........ .....+.+.. +.+++... ++ .|+.+|+++|+.+-..
T Consensus 90 ~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~g--~l~~~d~~tG~~~w~~ 148 (238)
T PF13360_consen 90 ALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG-DRLYVGTS-SG--KLVALDPKTGKLLWKY 148 (238)
T ss_dssp EEETTTSCEEEEEEE-SSCTCSTB--SEEEEET-TEEEEEET-CS--EEEEEETTTTEEEEEE
T ss_pred ecccCCcceeeeeccccccccccccccCceEec-CEEEEEec-cC--cEEEEecCCCcEEEEe
Confidence 99988887 465 33332111 1122334443 56665443 33 7999999999864433
No 435
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=90.73 E-value=4.5 Score=45.07 Aligned_cols=103 Identities=12% Similarity=-0.005 Sum_probs=52.4
Q ss_pred cEEEEEEcCCCCCcEEEEEECCCCCceEEEeeec-----cCCCCCCCCCcEEEEEEecCCCceEEEEEEEecCCCC--CC
Q 003878 463 SVVFISFTSFLIPGIVYQCNLKTETPEMKIFRET-----IIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIK--LD 535 (789)
Q Consensus 463 ~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~--~~ 535 (789)
+-+.|.+.|..+-..+.+||+.-.. +.. .++ ..++.. ...........+..| ...|+--..|.+.. ..
T Consensus 431 ~~v~YRfGSVGqDTqlcLWDlteD~--L~~-~~p~~~~R~~~n~~-~pats~~a~s~a~gg-~~~pg~~~~P~~~~r~~s 505 (636)
T KOG2394|consen 431 NSVTYRFGSVGQDTQLCLWDLTEDV--LVP-HPPLYRLRRHPNNS-SPATSPGAQSSAHGG-EIGPGNTSVPGPCTRSAS 505 (636)
T ss_pred cceEEEeecccccceEEEEecchhh--ccc-CCchhhhhcCCCCC-CCccCcccchhcccC-cccCCCccCCCCcccCCC
Confidence 3477888899999999999986542 111 110 011100 011111111123445 45555444555433 34
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeec
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIR 577 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~R 577 (789)
.+.|++=..+|++.....+.-. .. -||+.+..+-|
T Consensus 506 lp~s~i~~~ag~~~~~~~~~~~------~s-~~fs~lt~~~r 540 (636)
T KOG2394|consen 506 LPSSAISNRAGTPSVAGDGATA------SS-SGFSFLTSACR 540 (636)
T ss_pred CccccccccCCCCCcccccccc------cc-ccceeechhHh
Confidence 5667777777776554443211 11 56777776655
No 436
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=90.67 E-value=15 Score=39.34 Aligned_cols=135 Identities=8% Similarity=0.044 Sum_probs=80.9
Q ss_pred EEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCC-CCCChhH-
Q 003878 509 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGG-GEYGEEW- 586 (789)
Q Consensus 509 ~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~-g~~g~~~- 586 (789)
+.+++.. ++ .+..+ |+.|... ..+.=+||.+||-......+..-.....-|.+.|+..+.+....- +..-...
T Consensus 63 e~~~L~~-~~-~~fla-L~~~~~~--~~~~G~vIilp~~g~~~d~p~~i~~LR~~L~~~GW~Tlsit~P~~~~~~~p~~~ 137 (310)
T PF12048_consen 63 EVQWLQA-GE-ERFLA-LWRPANS--AKPQGAVIILPDWGEHPDWPGLIAPLRRELPDHGWATLSITLPDPAPPASPNRA 137 (310)
T ss_pred hcEEeec-CC-EEEEE-EEecccC--CCCceEEEEecCCCCCCCcHhHHHHHHHHhhhcCceEEEecCCCcccccCCccC
Confidence 3445554 45 56644 4455542 345668999999766666666555555666679999999876640 0000000
Q ss_pred ------Hhccc---------------------ccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC
Q 003878 587 ------HKGGA---------------------LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR 639 (789)
Q Consensus 587 ------~~~~~---------------------~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~ 639 (789)
..++. .......+.-+.+++.++.+++. .+|+++|+..|+.++..++...
T Consensus 138 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ari~Aa~~~~~~~~~---~~ivlIg~G~gA~~~~~~la~~ 214 (310)
T PF12048_consen 138 TEAEEVPSAGDQQLSQPSDEPSPASAQEAEAREAYEERLFARIEAAIAFAQQQGG---KNIVLIGHGTGAGWAARYLAEK 214 (310)
T ss_pred CCCCCCCCCCCCCcCCCCCCCccccccHhHHhHHHHHHHHHHHHHHHHHHHhcCC---ceEEEEEeChhHHHHHHHHhcC
Confidence 00000 00112234455566777777654 3599999999999999999887
Q ss_pred CC-ceeEEEecCC
Q 003878 640 PD-LFGCALAHVG 651 (789)
Q Consensus 640 pd-~f~a~v~~~p 651 (789)
+. ...+.|+..+
T Consensus 215 ~~~~~daLV~I~a 227 (310)
T PF12048_consen 215 PPPMPDALVLINA 227 (310)
T ss_pred CCcccCeEEEEeC
Confidence 64 3567776655
No 437
>PLN02209 serine carboxypeptidase
Probab=90.53 E-value=0.74 Score=51.75 Aligned_cols=140 Identities=9% Similarity=0.087 Sum_probs=76.5
Q ss_pred EEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHH---------------------HHHHHHcCCe
Q 003878 511 VFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVS---------------------RTILMRHLGA 569 (789)
Q Consensus 511 ~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~---------------------~~~~l~~~G~ 569 (789)
+.+....| ..+-.|++.... .....|+++++-||||.+...+...+ ...|.. =.
T Consensus 44 ~~v~~~~~-~~lf~~f~es~~--~~~~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~--~a 118 (437)
T PLN02209 44 IGIGEEEN-VQFFYYFIKSDK--NPQEDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTK--TA 118 (437)
T ss_pred EEecCCCC-eEEEEEEEecCC--CCCCCCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhh--cC
Confidence 44443446 566666665443 23568999999999988654221100 012222 23
Q ss_pred EEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHH-HcCCCCCCcEEEEeeChHHHHHHHHHH----hC-----
Q 003878 570 VFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLI-SAGYTQSRKLCIEGGSNGGLLVGACIN----QR----- 639 (789)
Q Consensus 570 ~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~-~~~~~d~~~i~i~G~S~GG~l~~~~~~----~~----- 639 (789)
.++.+|..-|.+|...-..... .....+.+|+..+++... ....-..+.+.|.|.|+||..+-.++. ..
T Consensus 119 nllfiDqPvGtGfSy~~~~~~~-~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~~ 197 (437)
T PLN02209 119 NIIFLDQPVGSGFSYSKTPIER-TSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICCN 197 (437)
T ss_pred cEEEecCCCCCCccCCCCCCCc-cCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhcccccC
Confidence 5666776655555421111111 111123466666555433 333344568999999999965444332 21
Q ss_pred C-CceeEEEecCCccccc
Q 003878 640 P-DLFGCALAHVGVMDML 656 (789)
Q Consensus 640 p-d~f~a~v~~~p~~d~~ 656 (789)
+ =-+++++...|++|..
T Consensus 198 ~~inl~Gi~igng~td~~ 215 (437)
T PLN02209 198 PPINLQGYVLGNPITHIE 215 (437)
T ss_pred CceeeeeEEecCcccChh
Confidence 1 1478999999988863
No 438
>KOG4328 consensus WD40 protein [Function unknown]
Probab=90.31 E-value=32 Score=37.83 Aligned_cols=204 Identities=11% Similarity=0.097 Sum_probs=99.8
Q ss_pred ccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEE
Q 003878 236 KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLV 315 (789)
Q Consensus 236 ~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~ 315 (789)
.++.+.|+|-+..=+|+. .+.-.|.+.++.....+.++ ...+...++.+..++.+.+.++
T Consensus 236 ~Vs~l~F~P~n~s~i~ss------------------SyDGtiR~~D~~~~i~e~v~--s~~~d~~~fs~~d~~~e~~~vl 295 (498)
T KOG4328|consen 236 PVSGLKFSPANTSQIYSS------------------SYDGTIRLQDFEGNISEEVL--SLDTDNIWFSSLDFSAESRSVL 295 (498)
T ss_pred cccceEecCCChhheeee------------------ccCceeeeeeecchhhHHHh--hcCccceeeeeccccCCCccEE
Confidence 357788888665544442 22335778888766554332 2223345567888999988888
Q ss_pred EEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCC-
Q 003878 316 MCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEP- 394 (789)
Q Consensus 316 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~- 394 (789)
+..+-+ ..-++|+.++....+ ++. +-.. ......+.|-..++...... +..+..||+..-
T Consensus 296 ~~~~~G-----~f~~iD~R~~~s~~~---------~~~-lh~k-KI~sv~~NP~~p~~laT~s~---D~T~kIWD~R~l~ 356 (498)
T KOG4328|consen 296 FGDNVG-----NFNVIDLRTDGSEYE---------NLR-LHKK-KITSVALNPVCPWFLATASL---DQTAKIWDLRQLR 356 (498)
T ss_pred Eeeccc-----ceEEEEeecCCccch---------hhh-hhhc-ccceeecCCCCchheeeccc---Ccceeeeehhhhc
Confidence 875432 345667766432211 111 1110 11111234433343333222 234556776542
Q ss_pred -C-C-eEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECC----CCceeeecccC--Ce-eEEE--eecccCC
Q 003878 395 -N-D-WFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLK----NGSLLHQLPIE--IG-SVNA--ISARRED 462 (789)
Q Consensus 395 -~-~-~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~----tG~~~~~l~~~--~~-~v~~--~s~s~d~ 462 (789)
+ . .--.+++. ..+.++.+++.+.-++....+. .|++||-. --.....|..+ .+ .++- ..|.|+-
T Consensus 357 ~K~sp~lst~~Hr--rsV~sAyFSPs~gtl~TT~~D~--~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~ 432 (498)
T KOG4328|consen 357 GKASPFLSTLPHR--RSVNSAYFSPSGGTLLTTCQDN--EIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDY 432 (498)
T ss_pred CCCCcceeccccc--ceeeeeEEcCCCCceEeeccCC--ceEEeecccccccCCccceeeccCcccccccchhheeCCCc
Confidence 2 1 11223444 5677777887433344444443 68888752 11111222222 11 1111 2467766
Q ss_pred cEEEEEEcCCCCCcEEEEEECCCC
Q 003878 463 SVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 463 ~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
+.+++. ..|..|=.+|...+
T Consensus 433 ~li~vg----~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 433 NLIVVG----RYPRPIDVFDGNGG 452 (498)
T ss_pred cEEEEe----ccCcceeEEcCCCC
Confidence 544432 44556777776555
No 439
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.05 E-value=31 Score=42.64 Aligned_cols=120 Identities=13% Similarity=0.173 Sum_probs=61.8
Q ss_pred EEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCC
Q 003878 304 SGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPK 383 (789)
Q Consensus 304 ~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~ 383 (789)
++.|--||++++++..........+.++|-++. + .. ......+.. ..-.|-|.|..+....... ..
T Consensus 200 ~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~---L---ns------~se~~~~l~-~~LsWkPsgs~iA~iq~~~-sd 265 (1265)
T KOG1920|consen 200 SISWRGDGEYFAVSFVESETGTRKIRVYDREGA---L---NS------TSEPVEGLQ-HSLSWKPSGSLIAAIQCKT-SD 265 (1265)
T ss_pred eEEEccCCcEEEEEEEeccCCceeEEEecccch---h---hc------ccCcccccc-cceeecCCCCeEeeeeecC-CC
Confidence 588999999999866544322356777776631 0 00 000001111 1123778777666544332 23
Q ss_pred ceEEEEECCCCC--CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCe-EEEEEEECC
Q 003878 384 YKIIRVDLKEPN--DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVK-YVLQIRDLK 438 (789)
Q Consensus 384 ~~L~~~dl~~~~--~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~-~~L~~~dl~ 438 (789)
.+|..+.-++-. .+..-.|.++ ..++.+.|..+..+++....+.. ..|++|...
T Consensus 266 ~~IvffErNGL~hg~f~l~~p~de-~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 266 SDIVFFERNGLRHGEFVLPFPLDE-KEVEELAWNSNSDILAVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred CcEEEEecCCccccccccCCcccc-cchheeeecCCCCceeeeecccccceEEEEEec
Confidence 467776654422 1222223332 22778888875555555444433 347776653
No 440
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=89.97 E-value=10 Score=43.32 Aligned_cols=112 Identities=15% Similarity=0.066 Sum_probs=59.0
Q ss_pred EEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEee
Q 003878 276 EFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKL 355 (789)
Q Consensus 276 ~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l 355 (789)
.|.+|+-.+...--.+. . |...+..+..++||.+++-.+++ ..|.++|+... .+....
T Consensus 194 ~lr~wDprt~~kimkLr-G---HTdNVr~ll~~dDGt~~ls~sSD-----gtIrlWdLgqQ-------------rCl~T~ 251 (735)
T KOG0308|consen 194 DLRLWDPRTCKKIMKLR-G---HTDNVRVLLVNDDGTRLLSASSD-----GTIRLWDLGQQ-------------RCLATY 251 (735)
T ss_pred ceEEeccccccceeeee-c---cccceEEEEEcCCCCeEeecCCC-----ceEEeeecccc-------------ceeeeE
Confidence 46777766643221122 2 22335567889999999866543 34788888652 112222
Q ss_pred eccccceeEEE-ecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEe
Q 003878 356 IDGFDAQYEVI-ANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAV 415 (789)
Q Consensus 356 ~~~~~~~~~~~-s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~ 415 (789)
...-+..|... +++=+++|. ++....|++.|+.++...+.+..+. ..+..+...
T Consensus 252 ~vH~e~VWaL~~~~sf~~vYs----G~rd~~i~~Tdl~n~~~~tlick~d--aPv~~l~~~ 306 (735)
T KOG0308|consen 252 IVHKEGVWALQSSPSFTHVYS----GGRDGNIYRTDLRNPAKSTLICKED--APVLKLHLH 306 (735)
T ss_pred EeccCceEEEeeCCCcceEEe----cCCCCcEEecccCCchhheEeecCC--Cchhhhhhc
Confidence 22222233322 233355553 3345779999998865334444333 444444444
No 441
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=89.77 E-value=10 Score=39.77 Aligned_cols=126 Identities=16% Similarity=0.135 Sum_probs=66.7
Q ss_pred EEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc--cee---EEEecCCCEEEEE
Q 003878 302 IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD--AQY---EVIANDDTVFTFL 376 (789)
Q Consensus 302 ~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~--~~~---~~~s~dG~~l~~~ 376 (789)
+.+++|.|++-.|+..+.+..-.-...|+-+++..|.. ..+ ....|+-.++.++. ..+ ..|+|+|..|.+.
T Consensus 149 v~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap--~pW--gsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv 224 (361)
T KOG1523|consen 149 VTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAP--TPW--GSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWV 224 (361)
T ss_pred eeeeeccCCcceecccccCcceeEEEEeeeccccCCCC--CCC--ccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEe
Confidence 56788999888887665443222234566666664421 111 11234444443331 111 3489999999987
Q ss_pred ECCCCCCceEEEEECCCCCC-eEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECC
Q 003878 377 TNKDAPKYKIIRVDLKEPND-WFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLK 438 (789)
Q Consensus 377 tn~~~~~~~L~~~dl~~~~~-~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~ 438 (789)
... ..+...|..++.. ...+ ... ...+.++.|..+..++. .-.+-.+.++..+-+
T Consensus 225 ~Hd----s~v~~~da~~p~~~v~~~-~~~-~lP~ls~~~ise~~vv~-ag~~c~P~lf~~~~~ 280 (361)
T KOG1523|consen 225 GHD----STVSFVDAAGPSERVQSV-ATA-QLPLLSVSWISENSVVA-AGYDCGPVLFVTDEE 280 (361)
T ss_pred cCC----CceEEeecCCCchhccch-hhc-cCCceeeEeecCCceee-cCCCCCceEEEeccc
Confidence 654 3477777766541 1111 111 23455666666344443 334434667776654
No 442
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=89.52 E-value=2.2 Score=47.83 Aligned_cols=144 Identities=13% Similarity=0.069 Sum_probs=83.5
Q ss_pred EEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHc--------------CCeEEEEEee
Q 003878 511 VFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRH--------------LGAVFCIANI 576 (789)
Q Consensus 511 ~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~--------------~G~~v~~~~~ 576 (789)
+.+....| ..+-.|++-... .....|+||++-||||-+...++..+...+.-+ +=..++..|-
T Consensus 49 v~v~~~~~-~~LFYwf~eS~~--~P~~dPlvLWLnGGPGCSSl~G~~~E~GPf~v~~~G~tL~~N~ySWnk~aNiLfLd~ 125 (454)
T KOG1282|consen 49 VTVNESEG-RQLFYWFFESEN--NPETDPLVLWLNGGPGCSSLGGLFEENGPFRVKYNGKTLYLNPYSWNKEANILFLDQ 125 (454)
T ss_pred EECCCCCC-ceEEEEEEEccC--CCCCCCEEEEeCCCCCccchhhhhhhcCCeEEcCCCCcceeCCccccccccEEEEec
Confidence 44444467 777777765543 235679999999999876443322221111100 1123555565
Q ss_pred cCCCCCChhHHhcccccCCcchHHHHHH-HHHHHHHcCCCCCCcEEEEeeChHHHH----HHHHHHhCC------CceeE
Q 003878 577 RGGGEYGEEWHKGGALAKKQNCFDDFIS-ASEYLISAGYTQSRKLCIEGGSNGGLL----VGACINQRP------DLFGC 645 (789)
Q Consensus 577 RG~g~~g~~~~~~~~~~~~~~~~~D~~~-~~~~L~~~~~~d~~~i~i~G~S~GG~l----~~~~~~~~p------d~f~a 645 (789)
.=|.+|...-...........+.+|+.. ..+|+.+...-..+.+.|.|-|++|.. |..+...+. =-+++
T Consensus 126 PvGvGFSYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~iNLkG 205 (454)
T KOG1282|consen 126 PVGVGFSYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNINLKG 205 (454)
T ss_pred CCcCCccccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCcccceE
Confidence 5555554321111112233344566654 456777766666789999999999944 444444321 25899
Q ss_pred EEecCCcccccc
Q 003878 646 ALAHVGVMDMLR 657 (789)
Q Consensus 646 ~v~~~p~~d~~~ 657 (789)
++...|++|...
T Consensus 206 ~~IGNg~td~~~ 217 (454)
T KOG1282|consen 206 YAIGNGLTDPEI 217 (454)
T ss_pred EEecCcccCccc
Confidence 999999998753
No 443
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=89.47 E-value=29 Score=36.06 Aligned_cols=110 Identities=7% Similarity=0.055 Sum_probs=56.5
Q ss_pred cccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCC-ccccc-ccCCCC
Q 003878 273 LYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEG-LEGFK-KRDGLL 350 (789)
Q Consensus 273 ~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~-~~~~~~ 350 (789)
+..+|.+-++.++.-...+ .+ +...+.++.|||...|++.+.+. ...+.++|+... .+ +..+. +..+..
T Consensus 166 r~~~VrLCDi~SGs~sH~L--sG--Hr~~vlaV~Wsp~~e~vLatgsa----Dg~irlWDiRra-sgcf~~lD~hn~k~~ 236 (397)
T KOG4283|consen 166 RDVQVRLCDIASGSFSHTL--SG--HRDGVLAVEWSPSSEWVLATGSA----DGAIRLWDIRRA-SGCFRVLDQHNTKRP 236 (397)
T ss_pred CCCcEEEEeccCCcceeee--cc--ccCceEEEEeccCceeEEEecCC----CceEEEEEeecc-cceeEEeecccCccC
Confidence 4556888888766433222 22 23346789999999999887643 344666665431 01 00000 000011
Q ss_pred ccEe-eecccccee-EEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 351 PFVK-LIDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 351 ~~~~-l~~~~~~~~-~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
|..+ .+....... ..|+.||++++..+ .+.++-.++..+|.
T Consensus 237 p~~~~n~ah~gkvngla~tSd~~~l~~~g----td~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 237 PILKTNTAHYGKVNGLAWTSDARYLASCG----TDDRIRVWNMESGR 279 (397)
T ss_pred ccccccccccceeeeeeecccchhhhhcc----CccceEEeecccCc
Confidence 1111 111122111 34777888776433 34567777777664
No 444
>PRK13613 lipoprotein LpqB; Provisional
Probab=89.24 E-value=35 Score=40.13 Aligned_cols=86 Identities=13% Similarity=0.146 Sum_probs=46.8
Q ss_pred eEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc-cceeEEEecCCCEEEEEECC
Q 003878 301 YIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF-DAQYEVIANDDTVFTFLTNK 379 (789)
Q Consensus 301 ~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~s~dG~~l~~~tn~ 379 (789)
.+..+..|+||-++++...... ...|++.-+.....+...+ .....+.... +..-..|..+ ..|+++...
T Consensus 456 ~I~~lrvSrDG~RvAvv~~~~g--~~~v~va~V~R~~~G~~~l------~~~~~l~~~l~~v~~~~W~~~-~sL~Vlg~~ 526 (599)
T PRK13613 456 RVVAVRVARDGVRVALIVEKDG--RRSLQIGRIVRDAKAVVSV------EEFRSLAPELEDVTDMSWAGD-SQLVVLGRE 526 (599)
T ss_pred EeEEEEECCCccEEEEEEecCC--CcEEEEEEEEeCCCCcEEe------eccEEeccCCCccceeEEcCC-CEEEEEecc
Confidence 4678999999999999876433 3456665443321110000 0111221111 1122347664 557765543
Q ss_pred CCCCceEEEEECCCCC
Q 003878 380 DAPKYKIIRVDLKEPN 395 (789)
Q Consensus 380 ~~~~~~L~~~dl~~~~ 395 (789)
...+..++.+++++..
T Consensus 527 ~~~~~~v~~v~vdG~~ 542 (599)
T PRK13613 527 EGGVQQARYVQVDGST 542 (599)
T ss_pred CCCCcceEEEecCCcC
Confidence 3446779999998764
No 445
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=89.08 E-value=48 Score=38.08 Aligned_cols=112 Identities=15% Similarity=0.263 Sum_probs=58.8
Q ss_pred EEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecc-ccce-e--EEEecCCCEEEEEECC
Q 003878 304 SGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG-FDAQ-Y--EVIANDDTVFTFLTNK 379 (789)
Q Consensus 304 ~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~-~~~~-~--~~~s~dG~~l~~~tn~ 379 (789)
.+.....|.+|+....+ +.||.+++.+.... +. ....+ .... + ...+|||..++-.+
T Consensus 276 nL~lDssGt~L~AsCtD-----~sIy~ynm~s~s~s-----------P~-~~~sg~~~~sf~vks~lSpd~~~l~SgS-- 336 (720)
T KOG0321|consen 276 NLILDSSGTYLFASCTD-----NSIYFYNMRSLSIS-----------PV-AEFSGKLNSSFYVKSELSPDDCSLLSGS-- 336 (720)
T ss_pred EEEecCCCCeEEEEecC-----CcEEEEeccccCcC-----------ch-hhccCcccceeeeeeecCCCCceEeccC--
Confidence 45555667999888753 55999998774211 11 11111 0101 1 23688888665322
Q ss_pred CCCCceEEEEECCCCCC-eEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECCCC
Q 003878 380 DAPKYKIIRVDLKEPND-WFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNG 440 (789)
Q Consensus 380 ~~~~~~L~~~dl~~~~~-~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG 440 (789)
...+.|.+.++..+. ...++.+. .-+..+.|.+. ..-++..++|. ++.+|++..|
T Consensus 337 --sd~~ayiw~vs~~e~~~~~l~Ght--~eVt~V~w~pS~~t~v~TcSdD~--~~kiW~l~~~ 393 (720)
T KOG0321|consen 337 --SDEQAYIWVVSSPEAPPALLLGHT--REVTTVRWLPSATTPVATCSDDF--RVKIWRLSNG 393 (720)
T ss_pred --CCcceeeeeecCccCChhhhhCcc--eEEEEEeeccccCCCceeeccCc--ceEEEeccCc
Confidence 234566666666541 22222332 34556666652 33345556665 5666666544
No 446
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=88.94 E-value=33 Score=36.05 Aligned_cols=96 Identities=16% Similarity=0.146 Sum_probs=66.3
Q ss_pred CceEEEEECCCCCC--eEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC--CeeEEEeec
Q 003878 383 KYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE--IGSVNAISA 458 (789)
Q Consensus 383 ~~~L~~~dl~~~~~--~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~--~~~v~~~s~ 458 (789)
.++|-.+|+..... ...+-+|. ..|.-+++..++.++++.+..| +-|+++|..+|+.+.++--+ ...+..+++
T Consensus 158 ~GqvQi~dL~~~~~~~p~~I~AH~--s~Iacv~Ln~~Gt~vATaStkG-TLIRIFdt~~g~~l~E~RRG~d~A~iy~iaF 234 (346)
T KOG2111|consen 158 TGQVQIVDLASTKPNAPSIINAHD--SDIACVALNLQGTLVATASTKG-TLIRIFDTEDGTLLQELRRGVDRADIYCIAF 234 (346)
T ss_pred cceEEEEEhhhcCcCCceEEEccc--CceeEEEEcCCccEEEEeccCc-EEEEEEEcCCCcEeeeeecCCchheEEEEEe
Confidence 47788888866441 23343444 5577788887789999999998 45899999999876665433 456777899
Q ss_pred ccCCcEEEEEEcCCCCCcEEEEEECCC
Q 003878 459 RREDSVVFISFTSFLIPGIVYQCNLKT 485 (789)
Q Consensus 459 s~d~~~l~~~~ss~~~P~~ly~~dl~t 485 (789)
||++..+.++ | .-+++..+.+..
T Consensus 235 Sp~~s~Lavs--S--dKgTlHiF~l~~ 257 (346)
T KOG2111|consen 235 SPNSSWLAVS--S--DKGTLHIFSLRD 257 (346)
T ss_pred CCCccEEEEE--c--CCCeEEEEEeec
Confidence 9999877764 3 234565555543
No 447
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=88.62 E-value=16 Score=37.03 Aligned_cols=105 Identities=17% Similarity=0.186 Sum_probs=62.7
Q ss_pred cCCCEEEEEECCCCCCceEEEEECCCCC-CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeec
Q 003878 368 NDDTVFTFLTNKDAPKYKIIRVDLKEPN-DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQL 446 (789)
Q Consensus 368 ~dG~~l~~~tn~~~~~~~L~~~dl~~~~-~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l 446 (789)
++++.+|+.+ ....|+.+|..+++ .|+.-++... ........ +.+++.. .++ +|+.+|..+|+.....
T Consensus 34 ~~~~~v~~~~----~~~~l~~~d~~tG~~~W~~~~~~~~---~~~~~~~~-~~v~v~~-~~~--~l~~~d~~tG~~~W~~ 102 (238)
T PF13360_consen 34 PDGGRVYVAS----GDGNLYALDAKTGKVLWRFDLPGPI---SGAPVVDG-GRVYVGT-SDG--SLYALDAKTGKVLWSI 102 (238)
T ss_dssp EETTEEEEEE----TTSEEEEEETTTSEEEEEEECSSCG---GSGEEEET-TEEEEEE-TTS--EEEEEETTTSCEEEEE
T ss_pred EeCCEEEEEc----CCCEEEEEECCCCCEEEEeeccccc---cceeeecc-ccccccc-cee--eeEecccCCcceeeee
Confidence 4677888764 35789999998876 3554443321 11233333 6776655 444 8999999889865442
Q ss_pred cc---C-CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 447 PI---E-IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 447 ~~---~-~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
.. + ...........+++.+++... ...++.+|+.+|+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~l~~~d~~tG~ 143 (238)
T PF13360_consen 103 YLTSSPPAGVRSSSSPAVDGDRLYVGTS----SGKLVALDPKTGK 143 (238)
T ss_dssp EE-SSCTCSTB--SEEEEETTEEEEEET----CSEEEEEETTTTE
T ss_pred ccccccccccccccCceEecCEEEEEec----cCcEEEEecCCCc
Confidence 11 1 111112222234666766554 6799999999994
No 448
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=88.57 E-value=1.8 Score=45.15 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=22.2
Q ss_pred CcEEEEeeChHHHHHHHHHHhCCC-ceeEEEe
Q 003878 618 RKLCIEGGSNGGLLVGACINQRPD-LFGCALA 648 (789)
Q Consensus 618 ~~i~i~G~S~GG~l~~~~~~~~pd-~f~a~v~ 648 (789)
+-+-++|+|.||++.=+++-+.|+ ..+-.|+
T Consensus 80 ~G~~~IGfSQGgl~lRa~vq~c~~~~V~nlIS 111 (279)
T PF02089_consen 80 NGFNAIGFSQGGLFLRAYVQRCNDPPVHNLIS 111 (279)
T ss_dssp T-EEEEEETCHHHHHHHHHHH-TSS-EEEEEE
T ss_pred cceeeeeeccccHHHHHHHHHCCCCCceeEEE
Confidence 579999999999998888887765 3455554
No 449
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=88.43 E-value=1.7 Score=56.63 Aligned_cols=99 Identities=13% Similarity=-0.004 Sum_probs=61.7
Q ss_pred ccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCC
Q 003878 538 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 617 (789)
Q Consensus 538 ~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~ 617 (789)
.|.++++||..+... .|.. +...+. .++.|+.++.+|.+.. .....+++++.+.+...+..-. ..
T Consensus 1068 ~~~l~~lh~~~g~~~--~~~~-l~~~l~-~~~~v~~~~~~g~~~~----------~~~~~~l~~la~~~~~~i~~~~-~~ 1132 (1296)
T PRK10252 1068 GPTLFCFHPASGFAW--QFSV-LSRYLD-PQWSIYGIQSPRPDGP----------MQTATSLDEVCEAHLATLLEQQ-PH 1132 (1296)
T ss_pred CCCeEEecCCCCchH--HHHH-HHHhcC-CCCcEEEEECCCCCCC----------CCCCCCHHHHHHHHHHHHHhhC-CC
Confidence 366888899876532 3332 344555 6789999998875421 1122355555544333333211 12
Q ss_pred CcEEEEeeChHHHHHHHHHHh---CCCceeEEEecCC
Q 003878 618 RKLCIEGGSNGGLLVGACINQ---RPDLFGCALAHVG 651 (789)
Q Consensus 618 ~~i~i~G~S~GG~l~~~~~~~---~pd~f~a~v~~~p 651 (789)
.+..+.|+|+||.++..++.+ +++....++...+
T Consensus 1133 ~p~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~l~l~~~ 1169 (1296)
T PRK10252 1133 GPYHLLGYSLGGTLAQGIAARLRARGEEVAFLGLLDT 1169 (1296)
T ss_pred CCEEEEEechhhHHHHHHHHHHHHcCCceeEEEEecC
Confidence 479999999999999998875 5777777665543
No 450
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=88.42 E-value=32 Score=35.25 Aligned_cols=56 Identities=11% Similarity=0.102 Sum_probs=42.6
Q ss_pred eeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEE
Q 003878 409 LESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVF 466 (789)
Q Consensus 409 i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~ 466 (789)
+.++.+-+|++++++...|++ ++++...+++.+..|+.+.+.+..++++++.+.++
T Consensus 254 v~gvrIRpD~KIlATAGWD~R--iRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmA 309 (323)
T KOG0322|consen 254 VSGVRIRPDGKILATAGWDHR--IRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMA 309 (323)
T ss_pred ccceEEccCCcEEeecccCCc--EEEEEeccCCchhhhhhhhcceeEEEeCCCCchhh
Confidence 567888888899999999985 55555556777667777777888899999876544
No 451
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=88.36 E-value=0.7 Score=52.63 Aligned_cols=73 Identities=11% Similarity=0.044 Sum_probs=53.8
Q ss_pred CeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHH
Q 003878 707 PSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 781 (789)
Q Consensus 707 pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 781 (789)
--+|+.||..|..|++..+..+++++.+.... ....-..=++|.+.|+.+|-.+.......+.+..+.+|+++
T Consensus 354 GKLI~~HG~aD~~I~p~~ti~YY~~V~~~~g~--~~~~v~dF~RlF~vPGm~HC~gG~g~~~~d~l~aL~~WVE~ 426 (474)
T PF07519_consen 354 GKLILYHGWADPLIPPQGTIDYYERVVARMGG--ALADVDDFYRLFMVPGMGHCGGGPGPDPFDALTALVDWVEN 426 (474)
T ss_pred CeEEEEecCCCCccCCCcHHHHHHHHHHhccc--ccccccceeEEEecCCCcccCCCCCCCCCCHHHHHHHHHhC
Confidence 47999999999999999999999999876200 00000123688999999997665533346788888899875
No 452
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.15 E-value=20 Score=40.49 Aligned_cols=95 Identities=21% Similarity=0.338 Sum_probs=45.9
Q ss_pred CcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEE
Q 003878 311 GQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVD 390 (789)
Q Consensus 311 G~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~d 390 (789)
|..|.... ...|.++|.+++. ....+.-.......|+++|+.+.+++.. ..-|+..+
T Consensus 117 G~LL~~~~------~~~i~~yDw~~~~--------------~i~~i~v~~vk~V~Ws~~g~~val~t~~---~i~il~~~ 173 (443)
T PF04053_consen 117 GNLLGVKS------SDFICFYDWETGK--------------LIRRIDVSAVKYVIWSDDGELVALVTKD---SIYILKYN 173 (443)
T ss_dssp SSSEEEEE------TTEEEEE-TTT----------------EEEEESS-E-EEEEE-TTSSEEEEE-S----SEEEEEE-
T ss_pred CcEEEEEC------CCCEEEEEhhHcc--------------eeeEEecCCCcEEEEECCCCEEEEEeCC---eEEEEEec
Confidence 77666554 2348899998742 2222221112456799999999988753 35566666
Q ss_pred CC-------CC-CCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEE
Q 003878 391 LK-------EP-NDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQI 434 (789)
Q Consensus 391 l~-------~~-~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~ 434 (789)
++ .| +..-.++.+- ...+.+..|.. + ++.+.... +|..
T Consensus 174 ~~~~~~~~~~g~e~~f~~~~E~-~~~IkSg~W~~-d--~fiYtT~~--~lkY 219 (443)
T PF04053_consen 174 LEAVAAIPEEGVEDAFELIHEI-SERIKSGCWVE-D--CFIYTTSN--HLKY 219 (443)
T ss_dssp HHHHHHBTTTB-GGGEEEEEEE--S--SEEEEET-T--EEEEE-TT--EEEE
T ss_pred chhcccccccCchhceEEEEEe-cceeEEEEEEc-C--EEEEEcCC--eEEE
Confidence 55 11 1122333331 24677888987 5 33333333 5654
No 453
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=88.15 E-value=1 Score=41.85 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHh
Q 003878 599 FDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQ 638 (789)
Q Consensus 599 ~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~ 638 (789)
.+.+...++.+.++.- +.+|.+.|||.||.+|..++..
T Consensus 47 ~~~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~ 84 (140)
T PF01764_consen 47 YDQILDALKELVEKYP--DYSIVITGHSLGGALASLAAAD 84 (140)
T ss_dssp HHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc--CccchhhccchHHHHHHHHHHh
Confidence 3455566666665533 4799999999999998877664
No 454
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=87.89 E-value=2.2 Score=45.55 Aligned_cols=120 Identities=18% Similarity=0.186 Sum_probs=75.4
Q ss_pred CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHc---------CCeEEEEEeecCCCCCChhHH
Q 003878 517 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRH---------LGAVFCIANIRGGGEYGEEWH 587 (789)
Q Consensus 517 dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~---------~G~~v~~~~~RG~g~~g~~~~ 587 (789)
.| .+|+..-+.|...+..++.--||+.||-+|+-.. |.. +..+|.+ .-|-|++|.+.|-| |.
T Consensus 132 eG-L~iHFlhvk~p~~k~~k~v~PlLl~HGwPGsv~E--Fyk-fIPlLT~p~~hg~~~d~~FEVI~PSlPGyg-----wS 202 (469)
T KOG2565|consen 132 EG-LKIHFLHVKPPQKKKKKKVKPLLLLHGWPGSVRE--FYK-FIPLLTDPKRHGNESDYAFEVIAPSLPGYG-----WS 202 (469)
T ss_pred cc-eeEEEEEecCCccccCCcccceEEecCCCchHHH--HHh-hhhhhcCccccCCccceeEEEeccCCCCcc-----cC
Confidence 68 8898888877765444444457788999886332 221 2233321 22678888888755 55
Q ss_pred hcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEec
Q 003878 588 KGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAH 649 (789)
Q Consensus 588 ~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~ 649 (789)
++.. ..+-+...-..-..+-+...|+ ++..|.|+-+|..+...++..+|+...+.=+.
T Consensus 203 d~~s-k~GFn~~a~ArvmrkLMlRLg~---nkffiqGgDwGSiI~snlasLyPenV~GlHln 260 (469)
T KOG2565|consen 203 DAPS-KTGFNAAATARVMRKLMLRLGY---NKFFIQGGDWGSIIGSNLASLYPENVLGLHLN 260 (469)
T ss_pred cCCc-cCCccHHHHHHHHHHHHHHhCc---ceeEeecCchHHHHHHHHHhhcchhhhHhhhc
Confidence 4422 2223333222222333455566 68999999999999999999999987665443
No 455
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=87.84 E-value=19 Score=41.74 Aligned_cols=132 Identities=15% Similarity=0.218 Sum_probs=71.6
Q ss_pred Eeeeccccceeeeeeec---------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCC
Q 003878 217 LFSLVKSTIYSFWSVVS---------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQS 287 (789)
Q Consensus 217 ~~~s~~~g~~~l~~~~~---------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~ 287 (789)
+.++=+.|.-||-+... ..+..+..|+|+|.-|++..++... .+.+++ ++|..+. +-.
T Consensus 232 lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da-------~~~~d~---n~v~Fys---p~G 298 (1189)
T KOG2041|consen 232 LAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDA-------DEPTDS---NKVHFYS---PYG 298 (1189)
T ss_pred EEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccc-------cCcccc---ceEEEec---cch
Confidence 44555566666633221 5556788999999999987554311 111111 1232221 112
Q ss_pred CcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEe
Q 003878 288 EDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIA 367 (789)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s 367 (789)
+-+-.+..|. ..+.++.|--.|-++++.. .+-||..++.. ++ .|.+++
T Consensus 299 ~i~gtlkvpg--~~It~lsWEg~gLriA~Av------dsfiyfanIRP----------------------~y--kWgy~e 346 (1189)
T KOG2041|consen 299 HIVGTLKVPG--SCITGLSWEGTGLRIAIAV------DSFIYFANIRP----------------------EY--KWGYIE 346 (1189)
T ss_pred hheEEEecCC--ceeeeeEEcCCceEEEEEe------cceEEEEeecc----------------------cc--eEEEee
Confidence 2222233332 3466788888888888766 35578766542 11 122232
Q ss_pred cCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 368 NDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 368 ~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
. ..+|+-+.++.+.+-|+.+|..+.+
T Consensus 347 ~--TvVy~y~~~e~p~y~i~Fwdtk~ne 372 (1189)
T KOG2041|consen 347 E--TVVYVYQKEELPQYGIMFWDTKTNE 372 (1189)
T ss_pred e--EEEEEEccCCCcceEEEEEecccCh
Confidence 1 2334444455678889999987765
No 456
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=87.78 E-value=23 Score=37.03 Aligned_cols=153 Identities=15% Similarity=0.164 Sum_probs=80.0
Q ss_pred EEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeE-EEecCCCEEEEEECCCC
Q 003878 303 FSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYE-VIANDDTVFTFLTNKDA 381 (789)
Q Consensus 303 ~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dG~~l~~~tn~~~ 381 (789)
....|-..|++++-.+.++. --++|+++|. ++..++ +.+.+.. .-.+-.++|++.+.++
T Consensus 276 ~a~dWL~gg~Q~vTaSWDRT-----AnlwDVEtge-------------~v~~Lt-GHd~ELtHcstHptQrLVvTsSrD- 335 (481)
T KOG0300|consen 276 SACDWLAGGQQMVTASWDRT-----ANLWDVETGE-------------VVNILT-GHDSELTHCSTHPTQRLVVTSSRD- 335 (481)
T ss_pred EehhhhcCcceeeeeecccc-----ceeeeeccCc-------------eecccc-CcchhccccccCCcceEEEEeccC-
Confidence 34567788999887766543 3357888753 222333 3332221 1123357788877775
Q ss_pred CCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCce-eeecccCCeeEEEeeccc
Q 003878 382 PKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSL-LHQLPIEIGSVNAISARR 460 (789)
Q Consensus 382 ~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~-~~~l~~~~~~v~~~s~s~ 460 (789)
..|+|+-+. ..-....++... ...+.++.+.. +.-+++.+++. .+.+||+..=.. +..|-. ...+..++.+.
T Consensus 336 tTFRLWDFR--eaI~sV~VFQGH-tdtVTS~vF~~-dd~vVSgSDDr--TvKvWdLrNMRsplATIRt-dS~~NRvavs~ 408 (481)
T KOG0300|consen 336 TTFRLWDFR--EAIQSVAVFQGH-TDTVTSVVFNT-DDRVVSGSDDR--TVKVWDLRNMRSPLATIRT-DSPANRVAVSK 408 (481)
T ss_pred ceeEeccch--hhcceeeeeccc-ccceeEEEEec-CCceeecCCCc--eEEEeeeccccCcceeeec-CCccceeEeec
Confidence 456765443 211112333322 34567777766 45556676665 688999873211 111111 12233344444
Q ss_pred CCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 461 EDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 461 d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
.++.+++- -....+.+||+...
T Consensus 409 g~~iIAiP----hDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 409 GHPIIAIP----HDNRQVRLFDLNGN 430 (481)
T ss_pred CCceEEec----cCCceEEEEecCCC
Confidence 45555442 23347777887655
No 457
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=87.78 E-value=2.1 Score=49.20 Aligned_cols=209 Identities=11% Similarity=0.003 Sum_probs=104.4
Q ss_pred ccccceeeEEEeeeccccceeeeeeecc----------cccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccE
Q 003878 207 YLRGIFFFFYLFSLVKSTIYSFWSVVSQ----------FKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHE 276 (789)
Q Consensus 207 ~~~~~~~~~~~~~s~~~g~~~l~~~~~~----------~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (789)
++++++..+.+.-..++..-+||.+.-. ....++.+.++...|+- ......
T Consensus 33 ~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Llaa-------------------gsasgt 93 (825)
T KOG0267|consen 33 CLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAA-------------------GSASGT 93 (825)
T ss_pred eeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcc-------------------cccCCc
Confidence 4566667777777777777788876320 01122333332222211 112235
Q ss_pred EEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeee
Q 003878 277 FYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI 356 (789)
Q Consensus 277 i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~ 356 (789)
|.+|+|.+...-. .++.... ...++.|+|-|.|.+-.+ ...++.++|..... .....
T Consensus 94 iK~wDleeAk~vr-tLtgh~~---~~~sv~f~P~~~~~a~gS-----tdtd~~iwD~Rk~G--------------c~~~~ 150 (825)
T KOG0267|consen 94 IKVWDLEEAKIVR-TLTGHLL---NITSVDFHPYGEFFASGS-----TDTDLKIWDIRKKG--------------CSHTY 150 (825)
T ss_pred eeeeehhhhhhhh-hhhcccc---CcceeeeccceEEecccc-----ccccceehhhhccC--------------ceeee
Confidence 8888987543222 2222222 235778999998874222 23456667765310 11111
Q ss_pred cc--ccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEE
Q 003878 357 DG--FDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQI 434 (789)
Q Consensus 357 ~~--~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~ 434 (789)
.+ +......++|+|+++.. ++.+..+-.+|+..++-..+.-.+. ..+..+.+.+.+.|+..+..+. .+.+
T Consensus 151 ~s~~~vv~~l~lsP~Gr~v~~----g~ed~tvki~d~~agk~~~ef~~~e--~~v~sle~hp~e~Lla~Gs~d~--tv~f 222 (825)
T KOG0267|consen 151 KSHTRVVDVLRLSPDGRWVAS----GGEDNTVKIWDLTAGKLSKEFKSHE--GKVQSLEFHPLEVLLAPGSSDR--TVRF 222 (825)
T ss_pred cCCcceeEEEeecCCCceeec----cCCcceeeeeccccccccccccccc--ccccccccCchhhhhccCCCCc--eeee
Confidence 11 11122348999987652 2334667788887765111211122 3344455555345555555554 6788
Q ss_pred EECCCCceeeecccCCeeEEEeecccCCcEE
Q 003878 435 RDLKNGSLLHQLPIEIGSVNAISARREDSVV 465 (789)
Q Consensus 435 ~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l 465 (789)
||+++=+.+.........+....+++++..+
T Consensus 223 ~dletfe~I~s~~~~~~~v~~~~fn~~~~~~ 253 (825)
T KOG0267|consen 223 WDLETFEVISSGKPETDGVRSLAFNPDGKIV 253 (825)
T ss_pred eccceeEEeeccCCccCCceeeeecCCceee
Confidence 8887433222222123334455666666543
No 458
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=87.70 E-value=4.4 Score=47.56 Aligned_cols=70 Identities=16% Similarity=0.159 Sum_probs=47.6
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
..+.+||+||..|+ + .++-..+.+|.++|+.. ..+ ..- ..-+..+.+|||+...++
T Consensus 254 V~~L~fS~~G~~Ll-S------------------GG~E~VLv~Wq~~T~~k--qfL-PRL--gs~I~~i~vS~ds~~~sl 309 (792)
T KOG1963|consen 254 VNSLSFSSDGAYLL-S------------------GGREGVLVLWQLETGKK--QFL-PRL--GSPILHIVVSPDSDLYSL 309 (792)
T ss_pred cceeEEecCCceEe-e------------------cccceEEEEEeecCCCc--ccc-ccc--CCeeEEEEEcCCCCeEEE
Confidence 68999999998887 2 23334588999998752 222 221 223567899999999887
Q ss_pred EEEcCCCCceEEEEEECCC
Q 003878 317 CIEENCDPVNKVYYCDLSA 335 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~ 335 (789)
...+ +.|.++...+
T Consensus 310 ~~~D-----NqI~li~~~d 323 (792)
T KOG1963|consen 310 VLED-----NQIHLIKASD 323 (792)
T ss_pred EecC-----ceEEEEeccc
Confidence 7653 5577766543
No 459
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=87.15 E-value=1.9 Score=44.75 Aligned_cols=85 Identities=15% Similarity=0.008 Sum_probs=51.7
Q ss_pred cEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCC
Q 003878 539 PCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSR 618 (789)
Q Consensus 539 P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~ 618 (789)
|.|..+|++.|. .+.|.+ ....+. .-..++....+|-+. ......+++|..++.-..|.+- --..
T Consensus 1 ~pLF~fhp~~G~--~~~~~~-L~~~l~-~~~~v~~l~a~g~~~----------~~~~~~~l~~~a~~yv~~Ir~~-QP~G 65 (257)
T COG3319 1 PPLFCFHPAGGS--VLAYAP-LAAALG-PLLPVYGLQAPGYGA----------GEQPFASLDDMAAAYVAAIRRV-QPEG 65 (257)
T ss_pred CCEEEEcCCCCc--HHHHHH-HHHHhc-cCceeeccccCcccc----------cccccCCHHHHHHHHHHHHHHh-CCCC
Confidence 568889997664 233333 234444 336677777776442 1223445666666544434331 1124
Q ss_pred cEEEEeeChHHHHHHHHHHh
Q 003878 619 KLCIEGGSNGGLLVGACINQ 638 (789)
Q Consensus 619 ~i~i~G~S~GG~l~~~~~~~ 638 (789)
...+.|+|+||.++..+|.+
T Consensus 66 Py~L~G~S~GG~vA~evA~q 85 (257)
T COG3319 66 PYVLLGWSLGGAVAFEVAAQ 85 (257)
T ss_pred CEEEEeeccccHHHHHHHHH
Confidence 79999999999999988876
No 460
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=87.11 E-value=32 Score=38.94 Aligned_cols=153 Identities=20% Similarity=0.264 Sum_probs=76.5
Q ss_pred EEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCC
Q 003878 303 FSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAP 382 (789)
Q Consensus 303 ~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~ 382 (789)
..+..||||+|++.+..- ...|.++|+.... ..+.+.++.-...+...+.|=...+|+.|...
T Consensus 55 t~ik~s~DGqY~lAtG~Y----KP~ikvydlanLS------------LKFERhlDae~V~feiLsDD~SK~v~L~~DR~- 117 (703)
T KOG2321|consen 55 TRIKVSPDGQYLLATGTY----KPQIKVYDLANLS------------LKFERHLDAEVVDFEILSDDYSKSVFLQNDRT- 117 (703)
T ss_pred ceeEecCCCcEEEEeccc----CCceEEEEcccce------------eeeeecccccceeEEEeccchhhheEeecCce-
Confidence 357889999999866432 3557888887631 11222222111122334444344555554321
Q ss_pred CceEEEEECCCCCCeEEeccCCCCceeeeEEEec-CCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccC
Q 003878 383 KYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN-LNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARRE 461 (789)
Q Consensus 383 ~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~-~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d 461 (789)
+-+....|-..+.-+|.-. . ++.... .--|++.+.. +.||+++|+.|.-+..+....+.+..++.++-
T Consensus 118 ----IefHak~G~hy~~RIP~~G-R---Dm~y~~~scDly~~gsg---~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~ 186 (703)
T KOG2321|consen 118 ----IEFHAKYGRHYRTRIPKFG-R---DMKYHKPSCDLYLVGSG---SEVYRLNLEQGRFLNPFETDSGELNVVSINEE 186 (703)
T ss_pred ----eeehhhcCeeeeeecCcCC-c---cccccCCCccEEEeecC---cceEEEEccccccccccccccccceeeeecCc
Confidence 0011111111122222211 1 111111 1124443332 37999999988876666655566666666665
Q ss_pred CcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 462 DSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 462 ~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
...+.+. +.-+.+--||..+..
T Consensus 187 hgLla~G----t~~g~VEfwDpR~ks 208 (703)
T KOG2321|consen 187 HGLLACG----TEDGVVEFWDPRDKS 208 (703)
T ss_pred cceEEec----ccCceEEEecchhhh
Confidence 5544432 345677888876654
No 461
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=86.88 E-value=1.6 Score=43.49 Aligned_cols=87 Identities=17% Similarity=0.193 Sum_probs=55.0
Q ss_pred CCeEEEEEeecCCCCCChh-HHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC----C-
Q 003878 567 LGAVFCIANIRGGGEYGEE-WHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR----P- 640 (789)
Q Consensus 567 ~G~~v~~~~~RG~g~~g~~-~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~----p- 640 (789)
.-..|.+|-||-..-+... -..........-.+.|+.+|.++-+++ +-+-..++++|||.|+.+...++..+ |
T Consensus 44 ~~~~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~-~n~GRPfILaGHSQGs~~l~~LL~e~~~~~pl 122 (207)
T PF11288_consen 44 GVCNVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLAN-YNNGRPFILAGHSQGSMHLLRLLKEEIAGDPL 122 (207)
T ss_pred cCCccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHh-cCCCCCEEEEEeChHHHHHHHHHHHHhcCchH
Confidence 3456778888854432110 000001122235689999999987776 23446899999999999999998765 2
Q ss_pred --CceeEEEecCCccc
Q 003878 641 --DLFGCALAHVGVMD 654 (789)
Q Consensus 641 --d~f~a~v~~~p~~d 654 (789)
.+.+|-+...++..
T Consensus 123 ~~rLVAAYliG~~v~~ 138 (207)
T PF11288_consen 123 RKRLVAAYLIGYPVTV 138 (207)
T ss_pred HhhhheeeecCccccH
Confidence 25666666666544
No 462
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=86.87 E-value=14 Score=37.67 Aligned_cols=148 Identities=18% Similarity=0.083 Sum_probs=77.6
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC------CCceeEEEecCCcccccccccccCCccchhhcCCC-
Q 003878 602 FISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR------PDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCS- 674 (789)
Q Consensus 602 ~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~------pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p- 674 (789)
+..++.+|.++.-+ .++-+.||||||.-....+..+ |-+=+-+....||- .-...+...... ...-|.+
T Consensus 122 lk~~msyL~~~Y~i--~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN-~~~l~~de~v~~-v~~~~~~~ 197 (288)
T COG4814 122 LKKAMSYLQKHYNI--PKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFN-VGNLVPDETVTD-VLKDGPGL 197 (288)
T ss_pred HHHHHHHHHHhcCC--ceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEeccccc-ccccCCCcchhe-eeccCccc
Confidence 34577788887443 5899999999998888777654 44444444444443 111000000000 0001111
Q ss_pred CcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCC------CCCCCcHHHHHHHHHHHHhhccCCCCCCCCCc
Q 003878 675 EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADH------DDRVVPLHSLKLLATMQYVLCTSLENSPQTNP 748 (789)
Q Consensus 675 ~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~------D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 748 (789)
.....++++... +..+. ...-+|++.|+- |.+||...+.-..-.+... ++.
T Consensus 198 ~~t~y~~y~~~n--~k~v~-----------~~~evl~IaGDl~dg~~tDG~Vp~assls~~~lf~~~----------~ks 254 (288)
T COG4814 198 IKTPYYDYIAKN--YKKVS-----------PNTEVLLIAGDLDDGKQTDGAVPWASSLSIYHLFKKN----------GKS 254 (288)
T ss_pred cCcHHHHHHHhc--ceeCC-----------CCcEEEEEecccccCCcCCCceechHhHHHHHHhccC----------cce
Confidence 111123333321 11222 246899999975 6788888877776666654 555
Q ss_pred EEEEEeCC--CCcCCCCchhhHHHHHHHHHHHH
Q 003878 749 IIGRIERK--AGHGVGLPTQKMIDEAADRYGFM 779 (789)
Q Consensus 749 ~~l~~~~~--~gH~~~~~~~~~~~~~~~~~~fl 779 (789)
+.-.++++ +-|.-.-... ...+.+..||
T Consensus 255 y~e~~~~Gk~a~Hs~lhen~---~v~~yv~~FL 284 (288)
T COG4814 255 YIESLYKGKDARHSKLHENP---TVAKYVKNFL 284 (288)
T ss_pred eEEEeeeCCcchhhccCCCh---hHHHHHHHHh
Confidence 55445554 6776543322 2333445554
No 463
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=86.78 E-value=9.6 Score=40.04 Aligned_cols=78 Identities=15% Similarity=0.157 Sum_probs=46.8
Q ss_pred ecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec---cccceeEEEecCC
Q 003878 294 KDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID---GFDAQYEVIANDD 370 (789)
Q Consensus 294 ~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~s~dG 370 (789)
+.+.-+.++.-.++.|=+++|++... ...+|++|++..+ +.. ...++. +.......+|.||
T Consensus 302 ~~~~c~iWfirf~~d~~~~~la~gnq-----~g~v~vwdL~~~e----------p~~-~ttl~~s~~~~tVRQ~sfS~dg 365 (385)
T KOG1034|consen 302 DYPMCDIWFIRFAFDPWQKMLALGNQ-----SGKVYVWDLDNNE----------PPK-CTTLTHSKSGSTVRQTSFSRDG 365 (385)
T ss_pred ccCccceEEEEEeecHHHHHHhhccC-----CCcEEEEECCCCC----------Ccc-CceEEeccccceeeeeeecccC
Confidence 34444566777888899999987543 3569999998742 111 112221 1222234478898
Q ss_pred CEEEEEECCCCCCceEEEEEC
Q 003878 371 TVFTFLTNKDAPKYKIIRVDL 391 (789)
Q Consensus 371 ~~l~~~tn~~~~~~~L~~~dl 391 (789)
..|+..++. .-|+++|.
T Consensus 366 s~lv~vcdd----~~Vwrwdr 382 (385)
T KOG1034|consen 366 SILVLVCDD----GTVWRWDR 382 (385)
T ss_pred cEEEEEeCC----CcEEEEEe
Confidence 877765543 45787763
No 464
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=86.52 E-value=21 Score=41.38 Aligned_cols=64 Identities=11% Similarity=0.049 Sum_probs=36.2
Q ss_pred ceeeeEEEecCCEEEEEEEeC-------CeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcC
Q 003878 407 DVLESATAVNLNQMIVSYLSD-------VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTS 471 (789)
Q Consensus 407 ~~i~~v~~~~~~~lv~~~~~~-------g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss 471 (789)
..+-+..|.+++.+++....+ -.+.+..+.+= |+....+..|...+++++|...|=++++...|
T Consensus 259 m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G~i~gtlkvpg~~It~lsWEg~gLriA~Avds 329 (1189)
T KOG2041|consen 259 MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY-GHIVGTLKVPGSCITGLSWEGTGLRIAIAVDS 329 (1189)
T ss_pred cEeecceecCCCcEEEEccCcccccCccccceEEEeccc-hhheEEEecCCceeeeeEEcCCceEEEEEecc
Confidence 456677888766655443222 12366666654 66666776666666666665444444444443
No 465
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.45 E-value=9.4 Score=38.78 Aligned_cols=116 Identities=14% Similarity=0.099 Sum_probs=59.7
Q ss_pred eEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHH-HHHcCC--eEEEEEeecCCCCCChhHHhcccc-cCC
Q 003878 520 TKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTI-LMRHLG--AVFCIANIRGGGEYGEEWHKGGAL-AKK 595 (789)
Q Consensus 520 ~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~-~l~~~G--~~v~~~~~RG~g~~g~~~~~~~~~-~~~ 595 (789)
..++...+-|--.+.....|+++++=|.||. ++|...++. +..+.+ .-+..+-.-|.-.....-.++... ...
T Consensus 11 l~~si~~~~~~v~~~~~~~~li~~IpGNPG~---~gFY~~F~~~L~~~l~~r~~~wtIsh~~H~~~P~sl~~~~s~~~~e 87 (301)
T KOG3975|consen 11 LPTSILTLKPWVTKSGEDKPLIVWIPGNPGL---LGFYTEFARHLHLNLIDRLPVWTISHAGHALMPASLREDHSHTNEE 87 (301)
T ss_pred CcccceeeeeeeccCCCCceEEEEecCCCCc---hhHHHHHHHHHHHhcccccceeEEeccccccCCccccccccccccc
Confidence 4444444444433345678999999887764 455554433 223233 112222222222222111111111 112
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHh
Q 003878 596 QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQ 638 (789)
Q Consensus 596 ~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~ 638 (789)
.-..+|.+.---..++.....-.||.++|||-|+++++.++-.
T Consensus 88 ifsL~~QV~HKlaFik~~~Pk~~ki~iiGHSiGaYm~Lqil~~ 130 (301)
T KOG3975|consen 88 IFSLQDQVDHKLAFIKEYVPKDRKIYIIGHSIGAYMVLQILPS 130 (301)
T ss_pred ccchhhHHHHHHHHHHHhCCCCCEEEEEecchhHHHHHHHhhh
Confidence 2334555554333344444555799999999999999998763
No 466
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=86.00 E-value=1.1 Score=42.41 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=21.5
Q ss_pred CCCcEEEEeeChHHHHHHHHHHhCCC
Q 003878 616 QSRKLCIEGGSNGGLLVGACINQRPD 641 (789)
Q Consensus 616 d~~~i~i~G~S~GG~l~~~~~~~~pd 641 (789)
...+|.+.|||+||.++..++.+.+.
T Consensus 26 p~~~i~v~GHSlGg~lA~l~a~~~~~ 51 (153)
T cd00741 26 PDYKIHVTGHSLGGALAGLAGLDLRG 51 (153)
T ss_pred CCCeEEEEEcCHHHHHHHHHHHHHHh
Confidence 45799999999999999988776543
No 467
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=85.82 E-value=65 Score=36.06 Aligned_cols=136 Identities=10% Similarity=0.094 Sum_probs=78.0
Q ss_pred EEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCC
Q 003878 302 IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDA 381 (789)
Q Consensus 302 ~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~ 381 (789)
..+++..|+...++-... ...+.+++ +. ...|.+.+... ..-..+.|.| .+++-+.
T Consensus 371 lwgla~hps~~q~~T~gq-----dk~v~lW~-~~-------------k~~wt~~~~d~-~~~~~fhpsg-~va~Gt~--- 426 (626)
T KOG2106|consen 371 LWGLATHPSKNQLLTCGQ-----DKHVRLWN-DH-------------KLEWTKIIEDP-AECADFHPSG-VVAVGTA--- 426 (626)
T ss_pred eeeEEcCCChhheeeccC-----cceEEEcc-CC-------------ceeEEEEecCc-eeEeeccCcc-eEEEeec---
Confidence 346677777777654432 23455565 21 12254544322 2223477877 6665332
Q ss_pred CCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC-CeeEEEeeccc
Q 003878 382 PKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAISARR 460 (789)
Q Consensus 382 ~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~-~~~v~~~s~s~ 460 (789)
.++.+++|.++.. ...+ +.+...|.-+..++++..++..+.|+.--||+++.+ |....++-.- ..-+..+.|+.
T Consensus 427 -~G~w~V~d~e~~~-lv~~--~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~-g~~y~r~~k~~gs~ithLDwS~ 501 (626)
T KOG2106|consen 427 -TGRWFVLDTETQD-LVTI--HTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN-GRKYSRVGKCSGSPITHLDWSS 501 (626)
T ss_pred -cceEEEEecccce-eEEE--EecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCC-CcEEEEeeeecCceeEEeeecC
Confidence 3688899988744 2222 333467888888887788888888875455555544 4432232211 13356778898
Q ss_pred CCcEEE
Q 003878 461 EDSVVF 466 (789)
Q Consensus 461 d~~~l~ 466 (789)
|++.+.
T Consensus 502 Ds~~~~ 507 (626)
T KOG2106|consen 502 DSQFLV 507 (626)
T ss_pred CCceEE
Confidence 888554
No 468
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=85.74 E-value=61 Score=35.64 Aligned_cols=184 Identities=8% Similarity=0.075 Sum_probs=98.9
Q ss_pred cccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCcc
Q 003878 273 LYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPF 352 (789)
Q Consensus 273 ~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~ 352 (789)
...+|.+|++.++.....+-. +..-+..+.|.|.--.++++... ...+-+.|... +.. ....|
T Consensus 264 aD~TV~lWD~~~g~p~~s~~~----~~k~Vq~l~wh~~~p~~LLsGs~----D~~V~l~D~R~-~~~--------s~~~w 326 (463)
T KOG0270|consen 264 ADKTVKLWDVDTGKPKSSITH----HGKKVQTLEWHPYEPSVLLSGSY----DGTVALKDCRD-PSN--------SGKEW 326 (463)
T ss_pred CCceEEEEEcCCCCcceehhh----cCCceeEEEecCCCceEEEeccc----cceEEeeeccC-ccc--------cCceE
Confidence 456799999988766543321 22335678899877776665432 34577777764 100 11222
Q ss_pred EeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC-CeEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeE
Q 003878 353 VKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN-DWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKY 430 (789)
Q Consensus 353 ~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~-~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~ 430 (789)
.- ..+.+-..|.|.....++.+.. ++.|+-+|+...+ ....+..|. ..|.++.++.. ..++.+...++
T Consensus 327 k~---~g~VEkv~w~~~se~~f~~~td---dG~v~~~D~R~~~~~vwt~~AHd--~~ISgl~~n~~~p~~l~t~s~d~-- 396 (463)
T KOG0270|consen 327 KF---DGEVEKVAWDPHSENSFFVSTD---DGTVYYFDIRNPGKPVWTLKAHD--DEISGLSVNIQTPGLLSTASTDK-- 396 (463)
T ss_pred Ee---ccceEEEEecCCCceeEEEecC---CceEEeeecCCCCCceeEEEecc--CCcceEEecCCCCcceeeccccc--
Confidence 21 1122334587766655555543 4689999998764 233455665 46788887763 35666666665
Q ss_pred EEEEEECC--CCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 431 VLQIRDLK--NGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 431 ~L~~~dl~--tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
.+.+|++. .++.+..-.+..+....++..++-. ..+++.+... .+..+|..+.
T Consensus 397 ~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a-~~la~GG~k~--~~~vwd~~~~ 451 (463)
T KOG0270|consen 397 VVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVA-FTLAFGGEKA--VLRVWDIFTN 451 (463)
T ss_pred eEEEEeecCCCCcccccccccccceeecccCCCcc-eEEEecCccc--eEEEeecccC
Confidence 45566654 2222111111223333444555444 2334443222 5666666554
No 469
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=85.61 E-value=23 Score=35.79 Aligned_cols=74 Identities=19% Similarity=0.187 Sum_probs=49.5
Q ss_pred EecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeee
Q 003878 366 IANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQ 445 (789)
Q Consensus 366 ~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~ 445 (789)
..|....+++. +++..+|.+|++++. ++..+... ..++..+.....+.-+++..+|| .+++||.++++.+..
T Consensus 122 ldP~enSi~~A----gGD~~~y~~dlE~G~-i~r~~rGH-tDYvH~vv~R~~~~qilsG~EDG--tvRvWd~kt~k~v~~ 193 (325)
T KOG0649|consen 122 LDPSENSILFA----GGDGVIYQVDLEDGR-IQREYRGH-TDYVHSVVGRNANGQILSGAEDG--TVRVWDTKTQKHVSM 193 (325)
T ss_pred eccCCCcEEEe----cCCeEEEEEEecCCE-EEEEEcCC-cceeeeeeecccCcceeecCCCc--cEEEEeccccceeEE
Confidence 34544555542 367899999999997 55444332 25676666533355677888888 688899999887655
Q ss_pred cc
Q 003878 446 LP 447 (789)
Q Consensus 446 l~ 447 (789)
|.
T Consensus 194 ie 195 (325)
T KOG0649|consen 194 IE 195 (325)
T ss_pred ec
Confidence 54
No 470
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=85.36 E-value=2.7 Score=33.30 Aligned_cols=50 Identities=14% Similarity=0.150 Sum_probs=29.4
Q ss_pred CCCcEEEEEEecCCCceEEEEEEEecCC--CCCCCCccEEEEEcCCCCccCCC
Q 003878 504 SEFHVHQVFVPSKDGSTKIPMFIVSKKN--IKLDGSHPCLLYGYGGFNISVTP 554 (789)
Q Consensus 504 ~~~~~~~~~~~s~dg~~~i~~~l~~p~~--~~~~~~~P~ll~~hGg~~~~~~~ 554 (789)
.+|.+|+..+++.|| .-+.++-+.++. ....++.|.|++.||-.+++..+
T Consensus 8 ~GY~~E~h~V~T~DG-YiL~l~RIp~~~~~~~~~~~k~pVll~HGL~~ss~~w 59 (63)
T PF04083_consen 8 HGYPCEEHEVTTEDG-YILTLHRIPPGKNSSNQNKKKPPVLLQHGLLQSSDDW 59 (63)
T ss_dssp TT---EEEEEE-TTS-EEEEEEEE-SBTTCTTTTTT--EEEEE--TT--GGGG
T ss_pred cCCCcEEEEEEeCCC-cEEEEEEccCCCCCcccCCCCCcEEEECCcccChHHH
Confidence 367889999999999 998888776655 22456789999999987766543
No 471
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=85.27 E-value=51 Score=34.33 Aligned_cols=211 Identities=14% Similarity=0.084 Sum_probs=107.1
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCc--EEEEecCCCCe---eEEEEEEec-C
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED--ILCWKDPEHPK---YIFSGHVTE-D 310 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~--~~~~~~~~~~~---~~~~~~~Sp-D 310 (789)
..-+-|.||.+..+= ..- ......+++|+++....+- ..+.....+.. -+.++.|.. |
T Consensus 99 ~tK~~wiPd~~g~~p-dlL---------------ATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~d 162 (364)
T KOG0290|consen 99 VTKLMWIPDSKGVYP-DLL---------------ATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVD 162 (364)
T ss_pred ccceEecCCccccCc-chh---------------hcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCC
Confidence 356889999876651 110 1223357788887543221 11111111111 134556655 3
Q ss_pred CcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeE-EEecCCCEEEEEECCCCCCceEEEE
Q 003878 311 GQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYE-VIANDDTVFTFLTNKDAPKYKIIRV 389 (789)
Q Consensus 311 G~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dG~~l~~~tn~~~~~~~L~~~ 389 (789)
-++|..++-+ ++.. ++|++++.. +.....++..-...+. .|+..|..++.... .++.+.++
T Consensus 163 p~~igtSSiD---TTCT--iWdie~~~~----------~~vkTQLIAHDKEV~DIaf~~~s~~~FASvg---aDGSvRmF 224 (364)
T KOG0290|consen 163 PNLIGTSSID---TTCT--IWDIETGVS----------GTVKTQLIAHDKEVYDIAFLKGSRDVFASVG---ADGSVRMF 224 (364)
T ss_pred cceeEeeccc---CeEE--EEEEeeccc----------cceeeEEEecCcceeEEEeccCccceEEEec---CCCcEEEE
Confidence 3444333322 2344 456665411 1112334443222332 36665555554332 35778888
Q ss_pred ECCCCCCeEEeccCCC--CceeeeEEEecCCE-EEEEEEeCCeEEEEEEECCC-CceeeecccCCeeEEEeecccCCcEE
Q 003878 390 DLKEPNDWFEVIPEAE--RDVLESATAVNLNQ-MIVSYLSDVKYVLQIRDLKN-GSLLHQLPIEIGSVNAISARREDSVV 465 (789)
Q Consensus 390 dl~~~~~~~~l~~~~~--~~~i~~v~~~~~~~-lv~~~~~~g~~~L~~~dl~t-G~~~~~l~~~~~~v~~~s~s~d~~~l 465 (789)
||...+. .+++-+.+ ...+.-++|.+.+- +++..-.+ ...|.++|+.. +..+-+|..+.+.|.+++|.|.+..-
T Consensus 225 DLR~leH-STIIYE~p~~~~pLlRLswnkqDpnymATf~~d-S~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~h 302 (364)
T KOG0290|consen 225 DLRSLEH-STIIYEDPSPSTPLLRLSWNKQDPNYMATFAMD-SNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSH 302 (364)
T ss_pred Eeccccc-ceEEecCCCCCCcceeeccCcCCchHHhhhhcC-CceEEEEEecCCCcceehhhcCcccccceEecCCCCce
Confidence 9887652 33433332 35667788877433 22222223 35788888753 22334555567888899998887766
Q ss_pred EEEEcCCCCCcEEEEEECCCC
Q 003878 466 FISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 466 ~~~~ss~~~P~~ly~~dl~tg 486 (789)
+.+.. .-.....||+...
T Consensus 303 ictaG---DD~qaliWDl~q~ 320 (364)
T KOG0290|consen 303 ICTAG---DDCQALIWDLQQM 320 (364)
T ss_pred eeecC---CcceEEEEecccc
Confidence 65543 2345666776543
No 472
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=85.03 E-value=51 Score=34.19 Aligned_cols=195 Identities=11% Similarity=0.060 Sum_probs=105.8
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
.++.+.+|| .||-+.. ......|++.++.++..... ...+. ..+..++..- +..|+-.
T Consensus 48 QGL~~~~~g-~LyESTG----------------~yG~S~l~~~d~~tg~~~~~--~~l~~-~~FgEGit~~--~d~l~qL 105 (264)
T PF05096_consen 48 QGLEFLDDG-TLYESTG----------------LYGQSSLRKVDLETGKVLQS--VPLPP-RYFGEGITIL--GDKLYQL 105 (264)
T ss_dssp EEEEEEETT-EEEEEEC----------------STTEEEEEEEETTTSSEEEE--EE-TT-T--EEEEEEE--TTEEEEE
T ss_pred ccEEecCCC-EEEEeCC----------------CCCcEEEEEEECCCCcEEEE--EECCc-cccceeEEEE--CCEEEEE
Confidence 678887665 5655532 23456788999988643222 22222 3334455554 4455544
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCe
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDW 397 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~ 397 (789)
+.. ....+++|.++.+ ..... .-....+. ...||+.|++ ++ +..+|+.+|.++.+..
T Consensus 106 TWk----~~~~f~yd~~tl~-------------~~~~~-~y~~EGWG-Lt~dg~~Li~-SD---GS~~L~~~dP~~f~~~ 162 (264)
T PF05096_consen 106 TWK----EGTGFVYDPNTLK-------------KIGTF-PYPGEGWG-LTSDGKRLIM-SD---GSSRLYFLDPETFKEV 162 (264)
T ss_dssp ESS----SSEEEEEETTTTE-------------EEEEE-E-SSS--E-EEECSSCEEE-E----SSSEEEEE-TTT-SEE
T ss_pred Eec----CCeEEEEccccce-------------EEEEE-ecCCcceE-EEcCCCEEEE-EC---CccceEEECCcccceE
Confidence 443 3567889987731 11111 10112333 3568887775 32 2468999998775421
Q ss_pred EE--ecc-CCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC---------------CeeEEEeecc
Q 003878 398 FE--VIP-EAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE---------------IGSVNAISAR 459 (789)
Q Consensus 398 ~~--l~~-~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~---------------~~~v~~~s~s 459 (789)
+. +.- ..+-..+..+.+.+ +.+++-.-. ...|.++|+++|+....+.+. .....+++.+
T Consensus 163 ~~i~V~~~g~pv~~LNELE~i~-G~IyANVW~--td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd 239 (264)
T PF05096_consen 163 RTIQVTDNGRPVSNLNELEYIN-GKIYANVWQ--TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYD 239 (264)
T ss_dssp EEEE-EETTEE---EEEEEEET-TEEEEEETT--SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEE
T ss_pred EEEEEEECCEECCCcEeEEEEc-CEEEEEeCC--CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEe
Confidence 21 211 11223466788886 788865543 458999999999876554321 2346788888
Q ss_pred cCCcEEEEEEcCCCCCcEEEEEEC
Q 003878 460 REDSVVFISFTSFLIPGIVYQCNL 483 (789)
Q Consensus 460 ~d~~~l~~~~ss~~~P~~ly~~dl 483 (789)
+..+.++++--- =|.+|++.+
T Consensus 240 ~~~~~l~vTGK~---Wp~lyeV~l 260 (264)
T PF05096_consen 240 PETDRLFVTGKL---WPKLYEVKL 260 (264)
T ss_dssp TTTTEEEEEETT----SEEEEEEE
T ss_pred CCCCEEEEEeCC---CCceEEEEE
Confidence 899988886543 366666544
No 473
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.95 E-value=3.2 Score=44.46 Aligned_cols=111 Identities=14% Similarity=0.162 Sum_probs=63.7
Q ss_pred CccEEEEEcCCCCccCCCCCCHHHHHHHHcCCe--EEEEEeecCCC-CCChhHHhcccccCCcchHHHHHHHHHHHHHcC
Q 003878 537 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGA--VFCIANIRGGG-EYGEEWHKGGALAKKQNCFDDFISASEYLISAG 613 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~--~v~~~~~RG~g-~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~ 613 (789)
..-++|++||- +.+....-. ...+.....|+ +.+.+-...+| -+|...- ++.-..+-.++...+++|...+
T Consensus 115 ~k~vlvFvHGf-Nntf~dav~-R~aqI~~d~g~~~~pVvFSWPS~g~l~~Yn~D----reS~~~Sr~aLe~~lr~La~~~ 188 (377)
T COG4782 115 AKTVLVFVHGF-NNTFEDAVY-RTAQIVHDSGNDGVPVVFSWPSRGSLLGYNYD----RESTNYSRPALERLLRYLATDK 188 (377)
T ss_pred CCeEEEEEccc-CCchhHHHH-HHHHHHhhcCCCcceEEEEcCCCCeeeecccc----hhhhhhhHHHHHHHHHHHHhCC
Confidence 34699999994 333222111 12334433443 44555544333 2332211 1122334577888888888775
Q ss_pred CCCCCcEEEEeeChHHHHHHHHHHh----C----CCceeEEEecCCcccc
Q 003878 614 YTQSRKLCIEGGSNGGLLVGACINQ----R----PDLFGCALAHVGVMDM 655 (789)
Q Consensus 614 ~~d~~~i~i~G~S~GG~l~~~~~~~----~----pd~f~a~v~~~p~~d~ 655 (789)
- -.+|.|+.||||.++++.++-| . +..|+-+|.-+|=.|.
T Consensus 189 ~--~~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD~ 236 (377)
T COG4782 189 P--VKRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDIDV 236 (377)
T ss_pred C--CceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCCh
Confidence 4 3699999999999998876543 2 2246777777775553
No 474
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.54 E-value=64 Score=34.90 Aligned_cols=191 Identities=14% Similarity=0.056 Sum_probs=101.3
Q ss_pred Eeeeccccceeeeeeeccc-ccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCC--cccEEEEEECCCCCCCcEEEE
Q 003878 217 LFSLVKSTIYSFWSVVSQF-KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSN--LYHEFYYHFLGTKQSEDILCW 293 (789)
Q Consensus 217 ~~~s~~~g~~~l~~~~~~~-~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~lg~~~~~~~~~~ 293 (789)
+..+..+|..|+|..-... -..-+.|-.-|.+++-.+...... ....-.+ +-..+-.|++.+. ..||
T Consensus 118 Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p------~Iva~GGke~~n~lkiwdle~~----~qiw 187 (412)
T KOG3881|consen 118 LITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDP------YIVATGGKENINELKIWDLEQS----KQIW 187 (412)
T ss_pred EEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCC------ceEecCchhcccceeeeecccc----eeee
Confidence 7788999999999984311 123455656677777666543221 0010011 1234666676543 3455
Q ss_pred ecCCC---------CeeEEEEEEecC--CcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec-cccc
Q 003878 294 KDPEH---------PKYIFSGHVTED--GQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-GFDA 361 (789)
Q Consensus 294 ~~~~~---------~~~~~~~~~SpD--G~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-~~~~ 361 (789)
...+- |.|+.++.|-++ ...++-.+ + ...+.++|...+ ..|+....- +...
T Consensus 188 ~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T-~----~hqvR~YDt~~q------------RRPV~~fd~~E~~i 250 (412)
T KOG3881|consen 188 SAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATIT-R----YHQVRLYDTRHQ------------RRPVAQFDFLENPI 250 (412)
T ss_pred eccCCCCccccceeeeeeccceecCCCCCceEEEEe-c----ceeEEEecCccc------------CcceeEeccccCcc
Confidence 54321 345555666655 44443322 2 466888887753 122222111 1111
Q ss_pred eeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCc
Q 003878 362 QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGS 441 (789)
Q Consensus 362 ~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~ 441 (789)
......|+|..+|+ .|. ..+|..+|+.++.-...-+ ..-...+.++...+...++++..-|- -|+++|.++.+
T Consensus 251 s~~~l~p~gn~Iy~-gn~---~g~l~~FD~r~~kl~g~~~-kg~tGsirsih~hp~~~~las~GLDR--yvRIhD~ktrk 323 (412)
T KOG3881|consen 251 SSTGLTPSGNFIYT-GNT---KGQLAKFDLRGGKLLGCGL-KGITGSIRSIHCHPTHPVLASCGLDR--YVRIHDIKTRK 323 (412)
T ss_pred eeeeecCCCcEEEE-ecc---cchhheecccCceeecccc-CCccCCcceEEEcCCCceEEeeccce--eEEEeecccch
Confidence 11224577777664 433 3578888988764111101 11124577888887556777665553 57888988644
No 475
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=83.67 E-value=3.1 Score=45.27 Aligned_cols=97 Identities=12% Similarity=0.041 Sum_probs=54.1
Q ss_pred EEEEEcCCCCccCCCCCCHHHHHHHHcCCeE---EEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCC
Q 003878 540 CLLYGYGGFNISVTPSFSVSRTILMRHLGAV---FCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQ 616 (789)
Q Consensus 540 ~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~---v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d 616 (789)
.++++||.. .. ...|.+ +..++...|+. +..+...+...-+. ....-+-+.+-++...... -
T Consensus 61 pivlVhG~~-~~-~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~----------~~~~~~ql~~~V~~~l~~~--g 125 (336)
T COG1075 61 PIVLVHGLG-GG-YGNFLP-LDYRLAILGWLTNGVYAFELSGGDGTYS----------LAVRGEQLFAYVDEVLAKT--G 125 (336)
T ss_pred eEEEEccCc-CC-cchhhh-hhhhhcchHHHhcccccccccccCCCcc----------ccccHHHHHHHHHHHHhhc--C
Confidence 677888862 21 223332 22335556665 66666654311110 0111122333333333332 2
Q ss_pred CCcEEEEeeChHHHHHHHHHHhCC--CceeEEEecCC
Q 003878 617 SRKLCIEGGSNGGLLVGACINQRP--DLFGCALAHVG 651 (789)
Q Consensus 617 ~~~i~i~G~S~GG~l~~~~~~~~p--d~f~a~v~~~p 651 (789)
..++.+.|||+||.++-.++...+ .+.+.++...+
T Consensus 126 a~~v~LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~t 162 (336)
T COG1075 126 AKKVNLIGHSMGGLDSRYYLGVLGGANRVASVVTLGT 162 (336)
T ss_pred CCceEEEeecccchhhHHHHhhcCccceEEEEEEecc
Confidence 379999999999999998888877 67777776543
No 476
>PRK13614 lipoprotein LpqB; Provisional
Probab=83.53 E-value=90 Score=36.48 Aligned_cols=85 Identities=12% Similarity=0.108 Sum_probs=45.2
Q ss_pred EEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCc-ccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCC
Q 003878 302 IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGL-EGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKD 380 (789)
Q Consensus 302 ~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~ 380 (789)
+..+..|+||-++++...... ...|++.-+.....+. ..+ .....+.......-..|..+ ..|++++...
T Consensus 436 I~~lrvSrDG~R~Avi~~~~g--~~~V~va~V~R~~~G~P~~L------~~~~~~~~~~~~~sl~W~~~-~sl~V~~~~~ 506 (573)
T PRK13614 436 VKELRVSREGVRALVISEQNG--KSRVQVAGIVRNEDGTPREL------TAPITLAADSDADTGAWVGD-STVVVTKASA 506 (573)
T ss_pred eEEEEECCCccEEEEEEEeCC--ccEEEEEEEEeCCCCCeEEc------cCceecccCCCcceeEEcCC-CEEEEEeccC
Confidence 678999999999998875443 3457765443211110 000 00111111111122347654 5677777654
Q ss_pred CCCceEEEEECCCCC
Q 003878 381 APKYKIIRVDLKEPN 395 (789)
Q Consensus 381 ~~~~~L~~~dl~~~~ 395 (789)
..+..++.+.+..+.
T Consensus 507 ~~~~~~~~v~v~~g~ 521 (573)
T PRK13614 507 TSNVVPELLSVDAGQ 521 (573)
T ss_pred CCcceEEEEEeCCCC
Confidence 456677777875543
No 477
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=83.39 E-value=11 Score=32.15 Aligned_cols=35 Identities=11% Similarity=0.092 Sum_probs=19.7
Q ss_pred eEEeCCCCcEEEEEEec-------------CCceEEEEEEEEcCCCce
Q 003878 136 KVSVSEDAKYLAYALSY-------------SGSDWATIKLMRIEDQIV 170 (789)
Q Consensus 136 ~~~~SpDg~~la~~~~~-------------~g~~~~~i~v~dl~tg~~ 170 (789)
++.+++|+..|.|+-+. .|.....|..+|..|++.
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~ 49 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKET 49 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEE
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeE
Confidence 45677776666666531 134467899999999964
No 478
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=83.23 E-value=1.6 Score=48.44 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=37.3
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC------ceeEEEecCC
Q 003878 597 NCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPD------LFGCALAHVG 651 (789)
Q Consensus 597 ~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd------~f~a~v~~~p 651 (789)
.-+..+...++.+.+.. ..++.|+||||||+++...+...+. .+++.|+.++
T Consensus 101 ~~~~~lk~~ie~~~~~~---~~kv~li~HSmGgl~~~~fl~~~~~~~W~~~~i~~~i~i~~ 158 (389)
T PF02450_consen 101 EYFTKLKQLIEEAYKKN---GKKVVLIAHSMGGLVARYFLQWMPQEEWKDKYIKRFISIGT 158 (389)
T ss_pred HHHHHHHHHHHHHHHhc---CCcEEEEEeCCCchHHHHHHHhccchhhHHhhhhEEEEeCC
Confidence 33556666666665542 5799999999999999998887643 3666666544
No 479
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=82.70 E-value=30 Score=37.37 Aligned_cols=76 Identities=17% Similarity=0.246 Sum_probs=46.3
Q ss_pred EEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceee
Q 003878 365 VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLH 444 (789)
Q Consensus 365 ~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~ 444 (789)
.|+||+++ +++++++ .+|.+......-.... +.-+....+..+++.+ ++++++..-|+ .|++||+.+|+.+.
T Consensus 158 avS~D~~~-IitaDRD---EkIRvs~ypa~f~Ies-fclGH~eFVS~isl~~-~~~LlS~sGD~--tlr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 158 AVSPDDQF-IITADRD---EKIRVSRYPATFVIES-FCLGHKEFVSTISLTD-NYLLLSGSGDK--TLRLWDITSGKLLD 229 (390)
T ss_pred eecCCCCE-EEEecCC---ceEEEEecCcccchhh-hccccHhheeeeeecc-CceeeecCCCC--cEEEEecccCCccc
Confidence 48999864 4566664 3444444333221111 1222235778888887 78877766554 89999999998765
Q ss_pred eccc
Q 003878 445 QLPI 448 (789)
Q Consensus 445 ~l~~ 448 (789)
.+.+
T Consensus 230 t~dl 233 (390)
T KOG3914|consen 230 TCDL 233 (390)
T ss_pred ccch
Confidence 5443
No 480
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=82.62 E-value=1.2e+02 Score=36.36 Aligned_cols=155 Identities=8% Similarity=0.053 Sum_probs=87.5
Q ss_pred EEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc--c-eeEEEecCCCEEEEEECC
Q 003878 303 FSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD--A-QYEVIANDDTVFTFLTNK 379 (789)
Q Consensus 303 ~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~--~-~~~~~s~dG~~l~~~tn~ 379 (789)
.-.++||.+++++....+ .+|.++.--..... . .....-.+. . ..-.|++||.+|| .
T Consensus 209 t~~~~spn~~~~Aa~d~d-----GrI~vw~d~~~~~~---------~--~t~t~lHWH~~~V~~L~fS~~G~~Ll----S 268 (792)
T KOG1963|consen 209 TCVALSPNERYLAAGDSD-----GRILVWRDFGSSDD---------S--ETCTLLHWHHDEVNSLSFSSDGAYLL----S 268 (792)
T ss_pred eeEEeccccceEEEeccC-----CcEEEEeccccccc---------c--ccceEEEecccccceeEEecCCceEe----e
Confidence 346889999999876543 23555532210000 0 111111111 1 1234899999887 3
Q ss_pred CCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeec---ccC-------
Q 003878 380 DAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQL---PIE------- 449 (789)
Q Consensus 380 ~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l---~~~------- 449 (789)
++..+-|.++.+++++ +.++|-- ...|..+.+++|+.++.....|. +|.++...+-+....| ..+
T Consensus 269 GG~E~VLv~Wq~~T~~--kqfLPRL-gs~I~~i~vS~ds~~~sl~~~DN--qI~li~~~dl~~k~tIsgi~~~~~~~k~~ 343 (792)
T KOG1963|consen 269 GGREGVLVLWQLETGK--KQFLPRL-GSPILHIVVSPDSDLYSLVLEDN--QIHLIKASDLEIKSTISGIKPPTPSTKTR 343 (792)
T ss_pred cccceEEEEEeecCCC--ccccccc-CCeeEEEEEcCCCCeEEEEecCc--eEEEEeccchhhhhhccCccCCCcccccc
Confidence 4455789999999987 6777765 47788999998766766666664 4555544222211111 111
Q ss_pred -CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 450 -IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 450 -~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
.+-...++.+|..+.+.+ ...|+.+..||+-+.
T Consensus 344 ~~~l~t~~~idpr~~~~vl----n~~~g~vQ~ydl~td 377 (792)
T KOG1963|consen 344 PQSLTTGVSIDPRTNSLVL----NGHPGHVQFYDLYTD 377 (792)
T ss_pred ccccceeEEEcCCCCceee----cCCCceEEEEecccc
Confidence 222345566664443333 146778888887654
No 481
>PF03283 PAE: Pectinacetylesterase
Probab=82.56 E-value=1 Score=49.25 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHH
Q 003878 600 DDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACI 636 (789)
Q Consensus 600 ~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~ 636 (789)
.-+.+++++|.++|+.++++|.+.|.||||+-+..-+
T Consensus 138 ~i~~avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~ 174 (361)
T PF03283_consen 138 RILRAVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHA 174 (361)
T ss_pred HHHHHHHHHHHHhcCcccceEEEeccChHHHHHHHHH
Confidence 4577899999999999999999999999998877643
No 482
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=81.47 E-value=1.1e+02 Score=38.26 Aligned_cols=31 Identities=23% Similarity=0.291 Sum_probs=24.7
Q ss_pred eEEeCCCCcEEEEEEecCCceEEEEEEEEcC
Q 003878 136 KVSVSEDAKYLAYALSYSGSDWATIKLMRIE 166 (789)
Q Consensus 136 ~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~ 166 (789)
+++|--||+++|.+.-....+...|+|||-+
T Consensus 200 ~IsWRgDg~~fAVs~~~~~~~~RkirV~drE 230 (1265)
T KOG1920|consen 200 SISWRGDGEYFAVSFVESETGTRKIRVYDRE 230 (1265)
T ss_pred eEEEccCCcEEEEEEEeccCCceeEEEeccc
Confidence 3778899999998765555555789999987
No 483
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=81.42 E-value=69 Score=33.02 Aligned_cols=150 Identities=9% Similarity=0.045 Sum_probs=82.3
Q ss_pred EEEeeeccccceeeeeeec----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCC
Q 003878 215 FYLFSLVKSTIYSFWSVVS----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGT 284 (789)
Q Consensus 215 ~~~~~s~~~g~~~l~~~~~----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~ 284 (789)
..++.+..+-+.++-.+.. ++...+.+.|||+++...+. ...+|+++.++.
T Consensus 129 ~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vg-------------------ds~~Vf~y~id~ 189 (344)
T KOG4532|consen 129 FPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVG-------------------DSRRVFRYAIDD 189 (344)
T ss_pred cceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEec-------------------CCCcceEEEeCC
Confidence 3466666666666655544 34457889999999887652 334688888876
Q ss_pred CCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeee-----ccc
Q 003878 285 KQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI-----DGF 359 (789)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~-----~~~ 359 (789)
....-+-+++.+..+.. ...+||......|....++ .+-++|+..-. .|..... ...
T Consensus 190 ~sey~~~~~~a~t~D~g-F~~S~s~~~~~FAv~~Qdg-----~~~I~DVR~~~------------tpm~~~sstrp~hnG 251 (344)
T KOG4532|consen 190 ESEYIENIYEAPTSDHG-FYNSFSENDLQFAVVFQDG-----TCAIYDVRNMA------------TPMAEISSTRPHHNG 251 (344)
T ss_pred ccceeeeeEecccCCCc-eeeeeccCcceEEEEecCC-----cEEEEEecccc------------cchhhhcccCCCCCC
Confidence 54443334544433322 3567887777776665433 36667765421 0110000 011
Q ss_pred cceeEEEecCC-CEEEEEECCCCCCceEEEEECCCCCCeEEeccCC
Q 003878 360 DAQYEVIANDD-TVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEA 404 (789)
Q Consensus 360 ~~~~~~~s~dG-~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~ 404 (789)
..+..-+++.| -.|+|.+. ....+.++|+.+....+.+++..
T Consensus 252 a~R~c~Fsl~g~lDLLf~sE---hfs~~hv~D~R~~~~~q~I~i~~ 294 (344)
T KOG4532|consen 252 AFRVCRFSLYGLLDLLFISE---HFSRVHVVDTRNYVNHQVIVIPD 294 (344)
T ss_pred ceEEEEecCCCcceEEEEec---CcceEEEEEcccCceeeEEecCc
Confidence 11233467644 23555543 24678888988776445454443
No 484
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.90 E-value=78 Score=33.25 Aligned_cols=48 Identities=19% Similarity=0.291 Sum_probs=29.7
Q ss_pred CceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCC
Q 003878 116 KAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQ 168 (789)
Q Consensus 116 ~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg 168 (789)
+.++.++...+... +..++++.++||-+.| |++.. .-..|..+++++.
T Consensus 71 ~y~~~i~akpi~g~-~~nvS~LTynp~~rtL-Fav~n---~p~~iVElt~~Gd 118 (316)
T COG3204 71 EYRARIDAKPILGE-TANVSSLTYNPDTRTL-FAVTN---KPAAIVELTKEGD 118 (316)
T ss_pred CceEEEeccccccc-cccccceeeCCCcceE-EEecC---CCceEEEEecCCc
Confidence 45666666543221 2338899999999887 44432 2357777776654
No 485
>PHA03098 kelch-like protein; Provisional
Probab=80.79 E-value=32 Score=39.94 Aligned_cols=116 Identities=8% Similarity=0.006 Sum_probs=62.4
Q ss_pred CCEEEEEECCCC---CCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCC------eEEEEEEECCCC
Q 003878 370 DTVFTFLTNKDA---PKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDV------KYVLQIRDLKNG 440 (789)
Q Consensus 370 G~~l~~~tn~~~---~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g------~~~L~~~dl~tG 440 (789)
++.+|+...... ....+..+|+.+.+ |+.+.+......-......+ +.+++.+..+. ...++++|+.++
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNK-WSKGSPLPISHYGGCAIYHD-GKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCe-eeecCCCCccccCceEEEEC-CEEEEECCccCCCCCcccceEEEecCCCC
Confidence 457777654311 12568889988776 87765432212222233334 78877664321 245899999877
Q ss_pred ceeeecc-c--CCeeEEEeecccCCcEEEEEEcCCCC---CcEEEEEECCCCCceEEEee
Q 003878 441 SLLHQLP-I--EIGSVNAISARREDSVVFISFTSFLI---PGIVYQCNLKTETPEMKIFR 494 (789)
Q Consensus 441 ~~~~~l~-~--~~~~v~~~s~s~d~~~l~~~~ss~~~---P~~ly~~dl~tg~~~~~~l~ 494 (789)
+. ..+. . +........ .+ +.+++ +.+... -..++.||+.++ +++.+.
T Consensus 467 ~W-~~~~~~~~~r~~~~~~~--~~-~~iyv-~GG~~~~~~~~~v~~yd~~~~--~W~~~~ 519 (534)
T PHA03098 467 KW-TELSSLNFPRINASLCI--FN-NKIYV-VGGDKYEYYINEIEVYDDKTN--TWTLFC 519 (534)
T ss_pred ce-eeCCCCCcccccceEEE--EC-CEEEE-EcCCcCCcccceeEEEeCCCC--EEEecC
Confidence 65 3333 2 222111111 23 34443 333332 358899999887 466554
No 486
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=80.73 E-value=1.2e+02 Score=35.27 Aligned_cols=61 Identities=13% Similarity=0.052 Sum_probs=39.1
Q ss_pred CceEEEEECCCCC-CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC
Q 003878 383 KYKIIRVDLKEPN-DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE 449 (789)
Q Consensus 383 ~~~L~~~dl~~~~-~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~ 449 (789)
.+.|..+|+.+++ .|+.-.+. ....+..... +.+++....+| .|+.+|.+||+.+-+..++
T Consensus 440 ~g~l~AiD~~tGk~~W~~~~~~---p~~~~~l~t~-g~lvf~g~~~G--~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 440 MGSLIAWDPITGKIVWEHKEDF---PLWGGVLATA-GDLVFYGTLEG--YFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred ceeEEEEeCCCCceeeEecCCC---CCCCcceEEC-CcEEEEECCCC--eEEEEECCCCCEeEEEeCC
Confidence 4579999999886 45432221 1223333344 55777766666 7999999999976555554
No 487
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=79.67 E-value=48 Score=36.42 Aligned_cols=144 Identities=18% Similarity=0.144 Sum_probs=73.9
Q ss_pred CCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEE
Q 003878 310 DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRV 389 (789)
Q Consensus 310 DG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~ 389 (789)
++..+++... ...++.+|.++|+ ..|...........+ ..+++.+|+.+. ++.|+.+
T Consensus 64 ~~~~v~v~~~-----~g~v~a~d~~tG~------------~~W~~~~~~~~~~~p--~v~~~~v~v~~~----~g~l~al 120 (377)
T TIGR03300 64 AGGKVYAADA-----DGTVVALDAETGK------------RLWRVDLDERLSGGV--GADGGLVFVGTE----KGEVIAL 120 (377)
T ss_pred ECCEEEEECC-----CCeEEEEEccCCc------------EeeeecCCCCcccce--EEcCCEEEEEcC----CCEEEEE
Confidence 3556665542 2458888988763 123222221111112 235677776442 4689999
Q ss_pred ECCCCC-CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCe--eEEE-eecccCCcEE
Q 003878 390 DLKEPN-DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIG--SVNA-ISARREDSVV 465 (789)
Q Consensus 390 dl~~~~-~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~--~v~~-~s~s~d~~~l 465 (789)
|.++++ .|+.-++. .......... +.+++.. .+ ..|+.+|.++|+.+-+...... .... .+..-.++.+
T Consensus 121 d~~tG~~~W~~~~~~---~~~~~p~v~~-~~v~v~~-~~--g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v 193 (377)
T TIGR03300 121 DAEDGKELWRAKLSS---EVLSPPLVAN-GLVVVRT-ND--GRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGV 193 (377)
T ss_pred ECCCCcEeeeeccCc---eeecCCEEEC-CEEEEEC-CC--CeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEE
Confidence 998876 35433322 2222333333 5666543 33 3799999998986444333211 1100 0011112344
Q ss_pred EEEEcCCCCCcEEEEEECCCCC
Q 003878 466 FISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 466 ~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
++.. .-..++.+|+.+|+
T Consensus 194 ~~~~----~~g~v~ald~~tG~ 211 (377)
T TIGR03300 194 LVGF----AGGKLVALDLQTGQ 211 (377)
T ss_pred EEEC----CCCEEEEEEccCCC
Confidence 4432 23589999999985
No 488
>PLN02454 triacylglycerol lipase
Probab=79.53 E-value=2.9 Score=46.10 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=31.1
Q ss_pred chHHHHHHHHHHHHHcCCCCC-CcEEEEeeChHHHHHHHHHHh
Q 003878 597 NCFDDFISASEYLISAGYTQS-RKLCIEGGSNGGLLVGACINQ 638 (789)
Q Consensus 597 ~~~~D~~~~~~~L~~~~~~d~-~~i~i~G~S~GG~l~~~~~~~ 638 (789)
...+++.+.++.|+++. -+. -+|.+.|||+||.||..++..
T Consensus 207 S~r~qvl~~V~~l~~~Y-p~~~~sI~vTGHSLGGALAtLaA~d 248 (414)
T PLN02454 207 SARSQLLAKIKELLERY-KDEKLSIVLTGHSLGASLATLAAFD 248 (414)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCceEEEEecCHHHHHHHHHHHH
Confidence 34577888888888763 232 259999999999999887753
No 489
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=79.37 E-value=1e+02 Score=33.76 Aligned_cols=128 Identities=13% Similarity=0.171 Sum_probs=66.6
Q ss_pred CCEEEEEECCCCCCceEEEEECCCCC-CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeec-c
Q 003878 370 DTVFTFLTNKDAPKYKIIRVDLKEPN-DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQL-P 447 (789)
Q Consensus 370 G~~l~~~tn~~~~~~~L~~~dl~~~~-~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l-~ 447 (789)
++.+|+.+. ++.|+.+|+++++ .|+.-.. ....+...+ +++++.. .++ .|+.+|.++|+.+-.. .
T Consensus 241 ~~~vy~~~~----~g~l~a~d~~tG~~~W~~~~~-----~~~~p~~~~-~~vyv~~-~~G--~l~~~d~~tG~~~W~~~~ 307 (377)
T TIGR03300 241 GGQVYAVSY----QGRVAALDLRSGRVLWKRDAS-----SYQGPAVDD-NRLYVTD-ADG--VVVALDRRSGSELWKNDE 307 (377)
T ss_pred CCEEEEEEc----CCEEEEEECCCCcEEEeeccC-----CccCceEeC-CEEEEEC-CCC--eEEEEECCCCcEEEcccc
Confidence 567776543 3579999998876 2432111 122334444 6777654 343 7999999888754333 2
Q ss_pred cCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCCceEEEeeeccCCCCCCCCC-cEEEEEEecCCC
Q 003878 448 IEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEF-HVHQVFVPSKDG 518 (789)
Q Consensus 448 ~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~l~~~~~~~~~~~~~-~~~~~~~~s~dg 518 (789)
++......+. ..++.+++. ..-+.++.+|..+|+. .-.+.-. ...+..... .-+.+.+.+.||
T Consensus 308 ~~~~~~ssp~--i~g~~l~~~----~~~G~l~~~d~~tG~~-~~~~~~~-~~~~~~sp~~~~~~l~v~~~dG 371 (377)
T TIGR03300 308 LKYRQLTAPA--VVGGYLVVG----DFEGYLHWLSREDGSF-VARLKTD-GSGIASPPVVVGDGLLVQTRDG 371 (377)
T ss_pred ccCCccccCE--EECCEEEEE----eCCCEEEEEECCCCCE-EEEEEcC-CCccccCCEEECCEEEEEeCCc
Confidence 2221222211 134555543 2346899999988852 2222211 111222222 234566777777
No 490
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=79.21 E-value=88 Score=32.86 Aligned_cols=150 Identities=13% Similarity=0.067 Sum_probs=82.2
Q ss_pred eEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCC
Q 003878 301 YIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKD 380 (789)
Q Consensus 301 ~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~ 380 (789)
.+.++.++|.+..|++++.++ .+.++++.... + ...+..+...--..|.+ ..+++. +
T Consensus 15 ~IS~v~f~~~~~~LLvssWDg-----slrlYdv~~~~--l-----------~~~~~~~~plL~c~F~d-~~~~~~----G 71 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSWDG-----SLRLYDVPANS--L-----------KLKFKHGAPLLDCAFAD-ESTIVT----G 71 (323)
T ss_pred ceeeEEEcCcCCcEEEEeccC-----cEEEEeccchh--h-----------hhheecCCceeeeeccC-CceEEE----e
Confidence 356788999999999988654 36666665521 0 00111110001122333 334442 2
Q ss_pred CCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC-CeeEEEeecc
Q 003878 381 APKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAISAR 459 (789)
Q Consensus 381 ~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~-~~~v~~~s~s 459 (789)
+-++.|.++|+.++. -..+-.+. ..+..+........+++...|. .|.+||... +. ...+.. ...|..++
T Consensus 72 ~~dg~vr~~Dln~~~-~~~igth~--~~i~ci~~~~~~~~vIsgsWD~--~ik~wD~R~-~~-~~~~~d~~kkVy~~~-- 142 (323)
T KOG1036|consen 72 GLDGQVRRYDLNTGN-EDQIGTHD--EGIRCIEYSYEVGCVISGSWDK--TIKFWDPRN-KV-VVGTFDQGKKVYCMD-- 142 (323)
T ss_pred ccCceEEEEEecCCc-ceeeccCC--CceEEEEeeccCCeEEEcccCc--cEEEEeccc-cc-cccccccCceEEEEe--
Confidence 235789999999876 22333443 4456666654345667777775 788999863 22 122222 22343333
Q ss_pred cCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 460 REDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 460 ~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
-.++.|++..+ -..+..||+...
T Consensus 143 v~g~~LvVg~~----~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 143 VSGNRLVVGTS----DRKVLIYDLRNL 165 (323)
T ss_pred ccCCEEEEeec----CceEEEEEcccc
Confidence 34666776433 347888888665
No 491
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.96 E-value=2.4 Score=49.53 Aligned_cols=47 Identities=21% Similarity=0.384 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHc--C---C--CCCCcEEEEeeChHHHHHHHHHHhCCCceeEEE
Q 003878 600 DDFISASEYLISA--G---Y--TQSRKLCIEGGSNGGLLVGACINQRPDLFGCAL 647 (789)
Q Consensus 600 ~D~~~~~~~L~~~--~---~--~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v 647 (789)
+-+.+|++++.+. + + --|.-|++.||||||+++-++++. |....+.|
T Consensus 157 EYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~tl-kn~~~~sV 210 (973)
T KOG3724|consen 157 EYVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLTL-KNEVQGSV 210 (973)
T ss_pred HHHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHhh-hhhccchh
Confidence 3455667666544 2 2 136779999999999998888776 65444443
No 492
>KOG2541 consensus Palmitoyl protein thioesterase [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=78.91 E-value=20 Score=37.02 Aligned_cols=89 Identities=20% Similarity=0.113 Sum_probs=49.7
Q ss_pred EEEEcCCCCccCCCCCCHHHHHHHH-cCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCc
Q 003878 541 LLYGYGGFNISVTPSFSVSRTILMR-HLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRK 619 (789)
Q Consensus 541 ll~~hGg~~~~~~~~~~~~~~~~l~-~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~ 619 (789)
+|..||-...+.+..+.. ..+++. .-|..|.+.++--| -...| -.+..+.+.-+-+.+. +.---++-
T Consensus 26 ~ii~HGigd~c~~~~~~~-~~q~l~~~~g~~v~~leig~g--~~~s~--------l~pl~~Qv~~~ce~v~-~m~~lsqG 93 (296)
T KOG2541|consen 26 VIVWHGIGDSCSSLSMAN-LTQLLEELPGSPVYCLEIGDG--IKDSS--------LMPLWEQVDVACEKVK-QMPELSQG 93 (296)
T ss_pred EEEEeccCcccccchHHH-HHHHHHhCCCCeeEEEEecCC--cchhh--------hccHHHHHHHHHHHHh-cchhccCc
Confidence 556788666555544432 344443 35777777776332 11111 1222233333334443 33334568
Q ss_pred EEEEeeChHHHHHHHHHHhCCC
Q 003878 620 LCIEGGSNGGLLVGACINQRPD 641 (789)
Q Consensus 620 i~i~G~S~GG~l~~~~~~~~pd 641 (789)
.-++|.|.||+++=+++-..|+
T Consensus 94 ynivg~SQGglv~Raliq~cd~ 115 (296)
T KOG2541|consen 94 YNIVGYSQGGLVARALIQFCDN 115 (296)
T ss_pred eEEEEEccccHHHHHHHHhCCC
Confidence 9999999999988777765544
No 493
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=78.28 E-value=3.9 Score=41.64 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHh
Q 003878 599 FDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQ 638 (789)
Q Consensus 599 ~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~ 638 (789)
+.++...++.+.++ + ...+|.+.|||+||.+|..++..
T Consensus 111 ~~~~~~~~~~~~~~-~-p~~~i~vtGHSLGGaiA~l~a~~ 148 (229)
T cd00519 111 YNQVLPELKSALKQ-Y-PDYKIIVTGHSLGGALASLLALD 148 (229)
T ss_pred HHHHHHHHHHHHhh-C-CCceEEEEccCHHHHHHHHHHHH
Confidence 34555555555544 2 23589999999999998877664
No 494
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=77.51 E-value=76 Score=34.80 Aligned_cols=163 Identities=13% Similarity=0.125 Sum_probs=87.5
Q ss_pred EEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEe---cCCc---eEEEEEEEEcCCCceecccccccc
Q 003878 106 VLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALS---YSGS---DWATIKLMRIEDQIVEADALSWVC 179 (789)
Q Consensus 106 ~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~---~~g~---~~~~i~v~dl~tg~~~~~~~~~~~ 179 (789)
-||+-+....+|+.+..||.--.-. -..+++-|.|..+.|.-. ..+. .-.++|++|+.|.+..+..+.+.
T Consensus 99 dLy~Yn~k~~eWkk~~spn~P~pRs---shq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~- 174 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSPNAPPPRS---SHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGG- 174 (521)
T ss_pred eeeEEeccccceeEeccCCCcCCCc---cceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCC-
Confidence 3677666667888888888643321 122334566644444221 1111 13479999999997765444332
Q ss_pred cccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCC
Q 003878 180 FCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKE 259 (789)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~ 259 (789)
=|...| ..-++|- .+.|+|..+.+..
T Consensus 175 --PS~RSG-------------------------------------------------HRMvawK--~~lilFGGFhd~n- 200 (521)
T KOG1230|consen 175 --PSPRSG-------------------------------------------------HRMVAWK--RQLILFGGFHDSN- 200 (521)
T ss_pred --CCCCcc-------------------------------------------------ceeEEee--eeEEEEcceecCC-
Confidence 111111 3456774 4566666554311
Q ss_pred CCCCCCCccccCCcccEEEEEECCCCCCCcEEEEe-cCCCCeeEEEEEEecCCcEEEEEEEcC---------CCCceEEE
Q 003878 260 GKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWK-DPEHPKYIFSGHVTEDGQYLVMCIEEN---------CDPVNKVY 329 (789)
Q Consensus 260 ~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~-~~~~~~~~~~~~~SpDG~~l~~~~~~~---------~~~~~~i~ 329 (789)
-+-.+.+.||.++|.+=.=...-+-. .|. +.....+..+|+|..+++..+.. +...++.|
T Consensus 201 ---------r~y~YyNDvy~FdLdtykW~Klepsga~Pt-pRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf 270 (521)
T KOG1230|consen 201 ---------RDYIYYNDVYAFDLDTYKWSKLEPSGAGPT-PRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMF 270 (521)
T ss_pred ---------CceEEeeeeEEEeccceeeeeccCCCCCCC-CCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeee
Confidence 01224456888888752211111100 121 22334567899999988865432 22467899
Q ss_pred EEECCCC
Q 003878 330 YCDLSAL 336 (789)
Q Consensus 330 ~~d~~~g 336 (789)
+++.+++
T Consensus 271 ~L~p~~~ 277 (521)
T KOG1230|consen 271 LLKPEDG 277 (521)
T ss_pred eecCCcC
Confidence 9988875
No 495
>PLN02571 triacylglycerol lipase
Probab=77.46 E-value=3.6 Score=45.40 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=30.8
Q ss_pred chHHHHHHHHHHHHHcCCCCC-CcEEEEeeChHHHHHHHHHHh
Q 003878 597 NCFDDFISASEYLISAGYTQS-RKLCIEGGSNGGLLVGACINQ 638 (789)
Q Consensus 597 ~~~~D~~~~~~~L~~~~~~d~-~~i~i~G~S~GG~l~~~~~~~ 638 (789)
...+++.+.++.|+++ +-+. -+|.|.|||+||.||..++..
T Consensus 205 Sar~qvl~eV~~L~~~-y~~e~~sI~VTGHSLGGALAtLaA~d 246 (413)
T PLN02571 205 SARDQVLNEVGRLVEK-YKDEEISITICGHSLGAALATLNAVD 246 (413)
T ss_pred hHHHHHHHHHHHHHHh-cCcccccEEEeccchHHHHHHHHHHH
Confidence 3457788888888875 3332 369999999999999887754
No 496
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=76.91 E-value=6.6 Score=38.24 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC
Q 003878 599 FDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRP 640 (789)
Q Consensus 599 ~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p 640 (789)
+.+|.+.++ ... ....++.++|||||+.+++.++.+.+
T Consensus 94 L~~f~~gl~---a~~-~~~~~~tv~GHSYGS~v~G~A~~~~~ 131 (177)
T PF06259_consen 94 LARFLDGLR---ATH-GPDAHLTVVGHSYGSTVVGLAAQQGG 131 (177)
T ss_pred HHHHHHHhh---hhc-CCCCCEEEEEecchhHHHHHHhhhCC
Confidence 344444443 333 34569999999999999999887733
No 497
>PLN02408 phospholipase A1
Probab=76.61 E-value=3.9 Score=44.48 Aligned_cols=40 Identities=18% Similarity=0.079 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHh
Q 003878 599 FDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQ 638 (789)
Q Consensus 599 ~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~ 638 (789)
-+.+.+.++.|+++.--.+-+|.|.|||.||.||..++..
T Consensus 181 r~qVl~eI~~ll~~y~~~~~sI~vTGHSLGGALAtLaA~d 220 (365)
T PLN02408 181 QEMVREEIARLLQSYGDEPLSLTITGHSLGAALATLTAYD 220 (365)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEeccchHHHHHHHHHHH
Confidence 3566777777776522223479999999999999887764
No 498
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=76.40 E-value=83 Score=32.71 Aligned_cols=106 Identities=13% Similarity=0.084 Sum_probs=66.7
Q ss_pred CCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC
Q 003878 370 DTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE 449 (789)
Q Consensus 370 G~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~ 449 (789)
+..||-.|..- +...|.++|+++++ .....+-.+...-++++..+ ++++...-.++ ..+++|.++-+.+.+++.+
T Consensus 55 ~g~LyESTG~y-G~S~l~~~d~~tg~-~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~--~~f~yd~~tl~~~~~~~y~ 129 (264)
T PF05096_consen 55 DGTLYESTGLY-GQSSLRKVDLETGK-VLQSVPLPPRYFGEGITILG-DKLYQLTWKEG--TGFVYDPNTLKKIGTFPYP 129 (264)
T ss_dssp TTEEEEEECST-TEEEEEEEETTTSS-EEEEEE-TTT--EEEEEEET-TEEEEEESSSS--EEEEEETTTTEEEEEEE-S
T ss_pred CCEEEEeCCCC-CcEEEEEEECCCCc-EEEEEECCccccceeEEEEC-CEEEEEEecCC--eEEEEccccceEEEEEecC
Confidence 45677777653 57899999999987 22222222235678999987 88887777776 6788999877666666554
Q ss_pred CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 450 IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 450 ~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
.-.. +++ .|++.++.+=. -.+++.+|+++-+
T Consensus 130 ~EGW-GLt--~dg~~Li~SDG----S~~L~~~dP~~f~ 160 (264)
T PF05096_consen 130 GEGW-GLT--SDGKRLIMSDG----SSRLYFLDPETFK 160 (264)
T ss_dssp SS---EEE--ECSSCEEEE-S----SSEEEEE-TTT-S
T ss_pred Ccce-EEE--cCCCEEEEECC----ccceEEECCcccc
Confidence 2111 333 56777776533 3588888887654
No 499
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=75.12 E-value=68 Score=36.93 Aligned_cols=44 Identities=7% Similarity=0.141 Sum_probs=25.7
Q ss_pred EEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEE
Q 003878 276 EFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIE 319 (789)
Q Consensus 276 ~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~ 319 (789)
.||.+++.+-....+.+|...-...+...-..||||.+|+-.+.
T Consensus 294 sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSs 337 (720)
T KOG0321|consen 294 SIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSS 337 (720)
T ss_pred cEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCC
Confidence 48888776543333333433333333444568999999986553
No 500
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=74.98 E-value=2.3e+02 Score=35.57 Aligned_cols=108 Identities=15% Similarity=0.082 Sum_probs=58.6
Q ss_pred EEEEEECCCCCCceEEEEECCCCC-CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC-
Q 003878 372 VFTFLTNKDAPKYKIIRVDLKEPN-DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE- 449 (789)
Q Consensus 372 ~l~~~tn~~~~~~~L~~~dl~~~~-~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~- 449 (789)
.+++.|+ +.+|..+|+.... .|+.-.+.. ...+.++.+++....++++...| .+.+||+.=+..+.....|
T Consensus 1165 ~lvy~T~----~~~iv~~D~r~~~~~w~lk~~~~-hG~vTSi~idp~~~WlviGts~G--~l~lWDLRF~~~i~sw~~P~ 1237 (1431)
T KOG1240|consen 1165 VLVYATD----LSRIVSWDTRMRHDAWRLKNQLR-HGLVTSIVIDPWCNWLVIGTSRG--QLVLWDLRFRVPILSWEHPA 1237 (1431)
T ss_pred eEEEEEe----ccceEEecchhhhhHHhhhcCcc-ccceeEEEecCCceEEEEecCCc--eEEEEEeecCceeecccCcc
Confidence 4555554 3568888876543 244333333 46788898888555666666666 5888998755443333444
Q ss_pred CeeEEEeec--c-cCCcEEEEEEcCCCCCcEEEEEECCCCCc
Q 003878 450 IGSVNAISA--R-REDSVVFISFTSFLIPGIVYQCNLKTETP 488 (789)
Q Consensus 450 ~~~v~~~s~--s-~d~~~l~~~~ss~~~P~~ly~~dl~tg~~ 488 (789)
...+..+.. . +.+.....+ +...-..+-.|++.+|-+
T Consensus 1238 ~~~i~~v~~~~~~~~~S~~vs~--~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1238 RAPIRHVWLCPTYPQESVSVSA--GSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred cCCcceEEeeccCCCCceEEEe--cccCCCceeeeecccCcc
Confidence 222222222 2 222222222 333455666777777753
Done!