BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003879
(789 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q08E13|RNF10_BOVIN RING finger protein 10 OS=Bos taurus GN=RNF10 PE=2 SV=1
Length = 810
Score = 135 bits (341), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 103/331 (31%), Positives = 158/331 (47%), Gaps = 50/331 (15%)
Query: 78 RWNSDRQFRNHNHPRGRGAGSAQ------NKGKMSGDSVSPRSQQRAGPVASQGSSGRRA 131
R NS + + P RG GS++ N G+ D V+ QRA +Q S ++
Sbjct: 83 RSNSQKSKTFNKMPPQRGGGSSKLFSSSFNGGRR--DEVA--EAQRAEFSPAQFSGPKK- 137
Query: 132 QTISGNHLLNFQYDPISRPQYRMPPPPA----RRQRKIRPYNKDLFLQANYKFVVLDTGD 187
I+ NHLLNF ++P + + R + +P+NK+LFLQAN +FVV + D
Sbjct: 138 --INLNHLLNFTFEPRGQAGHFEGSGHGSWGKRNKWGHKPFNKELFLQANCQFVVSEDQD 195
Query: 188 HAPESMDPDKMLQWEDIICVRYSNPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLM 247
+ DPD ++ W+ + VR + CPICL P +IT CGHIFC+ CIL YL +
Sbjct: 196 YTVHFADPDTLVNWDFVEQVRICSHEVPSCPICLYPPTAAKITRCGHIFCWACILHYLSL 255
Query: 248 GDEDYKGDCFKRCPLCFVMISSKELYTIHIENVRQHAVGDTIEFMLLIREKDSFVPSRKN 307
++ + +CP+C+ + K+L ++ RQ+ VGDTI L+ REK V K+
Sbjct: 256 SEKTW-----SKCPICYSSVHKKDLKSVVATESRQYVVGDTITMQLMKREKGVLVALPKS 310
Query: 308 KQESTTGSI---DETYDPFSKFTFTSDVDL---SVRKAMSDLDGWLA------------- 348
K + I DE + +SK S + V++ + L+ LA
Sbjct: 311 KWMNVDHPIHLGDEQHSQYSKLLLASKEQVLRRVVQEEKAALERQLAEEKHTPESCFIEA 370
Query: 349 ---------KADSGLVDDLEKLPYVCAAMEQ 370
+A SGL + ++P V AA+EQ
Sbjct: 371 AIQELKAREEALSGLAESRGEVPGVVAALEQ 401
Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 529 TEIKDKDSYNFYQAIDGQHLILHPLNLKCLLHHYGSYDMLPHRISGRILQLESVTQSEAM 588
T + Y FYQA DGQH+ LHP+N++CL+ YGS + P +IS ++++ + SE M
Sbjct: 497 THLSSSPCYYFYQAEDGQHMFLHPVNVRCLVREYGSLEQSPEKISATVVEISGYSMSEDM 556
Query: 589 RRRYRYLSHFSLTTTFQLCEIDLTEAL-PPDALSPFIDEIRKREKQRKQLA 638
R+R+RYLSH LT F +CE+ L L + L F D+I KR++QR++ A
Sbjct: 557 RQRHRYLSHLPLTCEFSICELALQPPLVSKETLEIFSDDIEKRKRQRQKKA 607
>sp|Q32NQ8|RNF10_XENLA RING finger protein 10 OS=Xenopus laevis GN=rnf10 PE=2 SV=1
Length = 756
Score = 134 bits (336), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 132/275 (48%), Gaps = 40/275 (14%)
Query: 59 GSSKEVSEAGTPNGRKSLSRWNSDRQFRNHNHPRGRG-AGSAQNKGKMSGDSVSPRSQQR 117
G SK SE NG S R+N R+ +++P+ AG + + + QR
Sbjct: 33 GESKPKSEQK--NGSGSKQRYNRKRE---NSYPKNETLAGQTRRSCPQKSKTFNKVPPQR 87
Query: 118 AGPVASQGSSGRRAQT------------------ISGNHLLNFQYDPISRPQYRMPPPPA 159
G Q GRR + I+ NHLLNF ++ P P A
Sbjct: 88 GG--NKQYGMGRREEVAETQRAEFSSAEYSGPKKINLNHLLNFTFESRGHPG---GPHSA 142
Query: 160 ------RRQRKIRPYNKDLFLQANYKFVVLDTGDHAPESMDPDKMLQWEDIICVRYSNPL 213
R + +P+NK+LFLQAN +FVV D D++ DPD ++ W+ + VR +
Sbjct: 143 NGHFGRRHKWANKPFNKELFLQANCQFVVSDVNDYSVHFTDPDTLVSWDFVEQVRIFSHE 202
Query: 214 SVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 273
CPICL P+ +IT CGHIFC+PCIL YL + ++D+ RCP+C+ I K+L
Sbjct: 203 VASCPICLYPPVAAKITRCGHIFCWPCILHYLSLSEKDW-----SRCPICYSSIIKKDLK 257
Query: 274 TIHIENVRQHAVGDTIEFMLLIREKDSFVPSRKNK 308
++ ++VGD I L+ REK V K+K
Sbjct: 258 SVVATETHLYSVGDKITMQLMRREKGVLVAMPKSK 292
Score = 114 bits (284), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 77/117 (65%), Gaps = 7/117 (5%)
Query: 537 YNFYQAIDGQHLILHPLNLKCLLHHYGSYDMLPHRISGRILQLESVTQSEAMRRRYRYLS 596
Y FYQA+DGQH+ LHP+N++CL+H YGS + P +I+ +++++ T +E +RRR+RYL
Sbjct: 465 YYFYQAVDGQHVYLHPVNVRCLVHEYGSLERCPEKITATVVEMDGFTMTEEVRRRHRYLC 524
Query: 597 HFSLTTTFQLCEIDLTEALPPDA----LSPFIDEIRKREKQRKQLANKERKEKMKAE 649
H LT F +CEI L PPD L F +E+ KR++ R++ A E++ + + E
Sbjct: 525 HLPLTCEFSICEIALG---PPDVSVKTLELFTEEVEKRKRLRQRKARDEQRREKRIE 578
>sp|Q3UIW5|RNF10_MOUSE RING finger protein 10 OS=Mus musculus GN=Rnf10 PE=2 SV=2
Length = 804
Score = 132 bits (333), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 114/218 (52%), Gaps = 12/218 (5%)
Query: 132 QTISGNHLLNFQYDPISRPQYRMPPPPA----RRQRKIRPYNKDLFLQANYKFVVLDTGD 187
+ I+ NHLLNF ++P + + R + +P+NK+LFLQAN +FVV + D
Sbjct: 136 KKINLNHLLNFTFEPRGQAGHFEGSGHGGWGKRNKWGHKPFNKELFLQANCQFVVSEDQD 195
Query: 188 HAPESMDPDKMLQWEDIICVRYSNPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLM 247
+A DPD ++ W+ + VR + CPICL P +IT CGHIFC+ CIL YL +
Sbjct: 196 YAAHFADPDTLVNWDFVEQVRICSHEVPSCPICLYPPTAAKITRCGHIFCWACILHYLSL 255
Query: 248 GDEDYKGDCFKRCPLCFVMISSKELYTIHIENVRQHAVGDTIEFMLLIREKDSFVPSRKN 307
++ + +CP+C+ + K+L ++ RQ+AVGDTI L+ REK V K+
Sbjct: 256 SEKTW-----SKCPICYSSVHKKDLKSVVATESRQYAVGDTITMQLMKREKGVLVALPKS 310
Query: 308 KQESTTGSI---DETYDPFSKFTFTSDVDLSVRKAMSD 342
K + I DE +SK S + R + +
Sbjct: 311 KWVNVDHPINLGDEQLSQYSKLLLASKEQVLHRVVLEE 348
Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 74/116 (63%), Gaps = 7/116 (6%)
Query: 527 GSTEIKDKDSYNFYQAIDGQHLILHPLNLKCLLHHYGSYDMLPHRISGRILQLESVTQSE 586
G T++ Y FYQA DGQH+ LHP+N++CL+ YGS + P +IS ++++ + SE
Sbjct: 489 GFTQLSSSPCYYFYQAEDGQHMFLHPVNVRCLVREYGSLEQSPEKISATVVEIAGYSMSE 548
Query: 587 AMRRRYRYLSHFSLTTTFQLCEIDLTEALPP----DALSPFIDEIRKREKQRKQLA 638
+R+R+RYLSH LT F +CE+ L PP + L F D+I KR++QR++ A
Sbjct: 549 DVRQRHRYLSHLPLTCEFSICELALQ---PPVVSKETLEMFSDDIEKRKRQRQKKA 601
>sp|Q5XI59|RNF10_RAT RING finger protein 10 OS=Rattus norvegicus GN=Rnf10 PE=2 SV=1
Length = 802
Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 112/218 (51%), Gaps = 12/218 (5%)
Query: 132 QTISGNHLLNFQYDPISRPQYRMPPPPA----RRQRKIRPYNKDLFLQANYKFVVLDTGD 187
+ I+ NHLLNF ++P + + R + +P+NK+LFLQAN +FVV + D
Sbjct: 136 KKINLNHLLNFTFEPRGQAGHFEGSGHGSWGKRNKWGHKPFNKELFLQANCQFVVSEDQD 195
Query: 188 HAPESMDPDKMLQWEDIICVRYSNPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLM 247
+ DPD ++ W+ + VR + CPICL P +IT CGHIFC+ CIL YL +
Sbjct: 196 YTANFADPDTLVNWDFVEQVRICSHEVPSCPICLYPPTAAKITRCGHIFCWACILHYLSL 255
Query: 248 GDEDYKGDCFKRCPLCFVMISSKELYTIHIENVRQHAVGDTIEFMLLIREKDSFVPSRKN 307
+ + +CP+C+ + K+L ++ RQ+ VGDTI L+ REK V K+
Sbjct: 256 SERTW-----SKCPICYSSVHKKDLKSVVATESRQYVVGDTITMQLMKREKGVLVALPKS 310
Query: 308 KQESTTGSI---DETYDPFSKFTFTSDVDLSVRKAMSD 342
K + I DE + +SK S + R + +
Sbjct: 311 KWMNVDHPISLGDEQHSQYSKLLLASKEQVLHRVVLEE 348
Score = 106 bits (264), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 74/116 (63%), Gaps = 7/116 (6%)
Query: 527 GSTEIKDKDSYNFYQAIDGQHLILHPLNLKCLLHHYGSYDMLPHRISGRILQLESVTQSE 586
G T++ Y FYQA DGQH+ LHP+N++CL+ YGS + P +IS ++++ + SE
Sbjct: 488 GFTQLSSSPCYYFYQAEDGQHMFLHPVNVRCLVREYGSLEQSPEKISATVVEIAGYSMSE 547
Query: 587 AMRRRYRYLSHFSLTTTFQLCEIDLTEALPP----DALSPFIDEIRKREKQRKQLA 638
+R+R+RYLSH LT F +CE+ L PP + L F D+I KR++QR++ A
Sbjct: 548 DVRQRHRYLSHLPLTCEFSICELALQ---PPVVSKETLEMFSDDIEKRKRQRQKKA 600
>sp|Q8N5U6|RNF10_HUMAN RING finger protein 10 OS=Homo sapiens GN=RNF10 PE=1 SV=2
Length = 811
Score = 130 bits (328), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 99/319 (31%), Positives = 150/319 (47%), Gaps = 50/319 (15%)
Query: 91 PRGRGAGSAQ------NKGKMSGDSVSPRSQQRAGPVASQGSSGRRAQTISGNHLLNFQY 144
P RG GS++ N G+ D V+ QRA +Q S ++ I+ NHLLNF +
Sbjct: 96 PPQRGGGSSKLFSSSFNGGRR--DEVA--EAQRAEFSPAQFSGPKK---INLNHLLNFTF 148
Query: 145 DPISRPQYRMPPPPA----RRQRKIRPYNKDLFLQANYKFVVLDTGDHAPESMDPDKMLQ 200
+P + + R + +P+NK+LFLQAN +FVV + D+ DPD ++
Sbjct: 149 EPRGQTGHFEGSGHGSWGKRNKWGHKPFNKELFLQANCQFVVSEDQDYTAHFADPDTLVN 208
Query: 201 WEDIICVRYSNPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRC 260
W+ + VR + CPICL P +IT CGHIFC+ CIL YL + ++ + +C
Sbjct: 209 WDFVEQVRICSHEVPSCPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTW-----SKC 263
Query: 261 PLCFVMISSKELYTIHIENVRQHAVGDTIEFMLLIREKDSFVPSRKNKQESTTGSI---D 317
P+C+ + K+L ++ Q+ VGDTI L+ REK V K+K + I D
Sbjct: 264 PICYSSVHKKDLKSVVATESHQYVVGDTITMQLMKREKGVLVALPKSKWMNVDHPIHLGD 323
Query: 318 ETYDPFSKFTFTSDVDLSVRKAMSD---LDGWLA----------------------KADS 352
E + +SK S + R + + L+ LA +A S
Sbjct: 324 EQHSQYSKLLLASKEQVLHRVVLEEKVALEQQLAEEKHTPESCFIEAAIQELKTREEALS 383
Query: 353 GLVDDLEKLPYVCAAMEQL 371
GL ++ V AA+EQL
Sbjct: 384 GLAGSRREVTGVVAALEQL 402
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 74/117 (63%), Gaps = 7/117 (5%)
Query: 526 TGSTEIKDKDSYNFYQAIDGQHLILHPLNLKCLLHHYGSYDMLPHRISGRILQLESVTQS 585
+G T + Y FYQA DGQH+ LHP+N++CL+ YGS + P +IS ++++ + S
Sbjct: 495 SGFTRLSSSPCYYFYQAEDGQHMFLHPVNVRCLVREYGSLERSPEKISATVVEIAGYSMS 554
Query: 586 EAMRRRYRYLSHFSLTTTFQLCEIDLTEALPP----DALSPFIDEIRKREKQRKQLA 638
E +R+R+RYLSH LT F +CE+ L PP + L F D+I KR++QR++ A
Sbjct: 555 EDVRQRHRYLSHLPLTCEFSICELALQ---PPVVSKETLEMFSDDIEKRKRQRQKKA 608
>sp|O94271|YORN_SCHPO Uncharacterized RING finger protein P8B7.23 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBP8B7.23 PE=4 SV=1
Length = 673
Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 131/272 (48%), Gaps = 39/272 (14%)
Query: 34 LHLSSPS--PSPNQIPGLLASTAQDSGGS----SKEVSEAGTPNGRKSLSRWNSDRQFRN 87
L+ SP+ PS + IP A T + S + E G P + L+ +S+R+ +N
Sbjct: 22 LNAKSPNFIPSSSNIPRSSAKTKEHSADRKPHRNSEKKTQGMPRKNQQLA--SSERKTKN 79
Query: 88 HNHPRGRGAGSAQNKGKMSGDSVSPRSQQRAGPVASQGSSGRRAQTISGNHLLNFQYDPI 147
+ + A + G+ D + + ++++ + +R Q I+ NHLLNFQ+ P
Sbjct: 80 KKRLEKQSSAIADSIGESLDDPQTVYDEHLFDILSAR--TNKRGQ-INLNHLLNFQFTPR 136
Query: 148 SRPQYRMPPPPARRQRKI---------RPYNKDLFLQANYKFVVLDTGDHAPESMDPDKM 198
+ PP RR R P +K ++ ANY+FVV GD+ + +DPD
Sbjct: 137 TNSNAFSAPP--RRSRGYNTYGQGSGHHPMDKSRYVNANYRFVVSPIGDYQSQKLDPDSP 194
Query: 199 LQWEDIICVRYSNPLSV-QCPICL-EYPLCPQITSCGHIFCFPCILQYL----------- 245
++WED+ V S+ + CP CL E P+ +++ CGH++CF C+L+++
Sbjct: 195 VKWEDVWQVLCSSDFQLAACPFCLEEKPVAARMSRCGHVYCFSCLLRFVETPTAAEVKAA 254
Query: 246 -LMGDEDYKGDCFKR-CPLCFVMISSKELYTI 275
G + K C R CP+C+ I ++++ I
Sbjct: 255 ETSGTKIVK--CGHRSCPICWDSIRLRDVHPI 284
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 11/166 (6%)
Query: 492 TSLSSSYDES--KSMQANETSLSSSYDESKSL----QANFTGSTEIKDKDSYNFYQAIDG 545
+SLS S +E KS+Q + +L + K L N +EI D +Y FYQ
Sbjct: 396 SSLSESVNEQNIKSLQTDIDNLCLQSNSLKQLSEVDDLNDVSGSEIAD--AYLFYQPFAH 453
Query: 546 QHLILHPLNLKCLLHHYGSYDMLPHRISGRILQLES--VTQSEAMRRRYRYLSHFSLTTT 603
H+ L PL+++ L +GSY+ P + R+ ++ S + SE +R+R++Y++H
Sbjct: 454 SHIYLSPLDIRILKSAFGSYENFPDELVPRVERISSGHLVNSE-LRQRFKYMAHLPEGCE 512
Query: 604 FQLCEIDLTEALPPDALSPFIDEIRKREKQRKQLANKERKEKMKAE 649
E D ++ +P + L F EI KR KQRK +E + + +AE
Sbjct: 513 VAFIECDWSKIIPKEVLLTFKSEISKRRKQRKAQEMREERYRQRAE 558
>sp|Q06436|MAG2_YEAST RING-finger protein MAG2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=MAG2 PE=1 SV=1
Length = 670
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 113/260 (43%), Gaps = 29/260 (11%)
Query: 70 PNGRKSLSRWNSDRQFRNHN-HPRGRGAGSAQNKGKMSGDSVSPRSQQRAGPVASQGS-- 126
P +K SD + HN H GR S Q + + S R + ++ Q
Sbjct: 40 PVSKKKPGNKVSDGRDNAHNYHGEGRRKSSKQQRSRTPYKETSTRINDQDIDLSIQEEIL 99
Query: 127 ------SGRRAQTISGNHLLNFQYDPISRPQYRMPPPPARRQRKIRPYN--KDLFLQANY 178
GR+ Q +S NHLLNFQ + R + R +R+ + D F+ NY
Sbjct: 100 GGNFKLRGRKTQ-VSINHLLNFQLPEVEREKSRSSSSKKSNRRRDEHVHLHGDTFVNVNY 158
Query: 179 KFVVLDTGDHAPESMDPDKMLQWEDIICVRYSNPLSVQCPICL-EYPLCPQITSCGHIFC 237
+ +V D D+ ++ +P+ + E I+ R P C ICL E P+ P++ +CGHIFC
Sbjct: 159 RLLVDDRFDYPEQNCNPNVPVDQEKIL--RVIVPKGQNCSICLSEEPVAPRMVTCGHIFC 216
Query: 238 FPCILQYLLM------GDEDY-KGDCFKRCPLCFVMISSKELYTIHIEN-------VRQH 283
C+L + + + Y K +K CPLC +I K + + E+ ++
Sbjct: 217 LSCLLNFFSIEETVKNKETGYSKKKKYKECPLCGSIIGPKRVKPVLYEDDFDVTRLNQKP 276
Query: 284 AVGDTIEFMLLIREKDSFVP 303
G T+ L+ + S +P
Sbjct: 277 EPGATVHLQLMCKPHGSLLP 296
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 529 TEIKDKDSYNFYQAI--DGQHLILHPLNLKCLLHHYGSYDMLPHRISGRI--LQLESVTQ 584
T+ D +Y FYQ + L PL++K LL + Y P I + + ++V
Sbjct: 405 TKYDDSSAYFFYQTLVASSTKYFLSPLDVKILLTIFHYYSKFPESIETTVENIHYDTVV- 463
Query: 585 SEAMRRRYRYLSHFSLTTTFQLCEIDLTEA--LPPDALSPFIDEIRKREKQ 633
+E + RRY+Y+ H + T L ++D + LP + F E+++R ++
Sbjct: 464 TEQLIRRYKYIGHLPIGTEIALLDLDWRKIPFLPKEIYEQFAHELKQRRRK 514
>sp|Q6CHI1|RAD18_YARLI Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=RAD18 PE=3 SV=1
Length = 344
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 214 SVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 273
+++C IC E+ P IT CGH FC CI +YL + +RCP C +L
Sbjct: 25 TLRCHICKEFFTAPMITGCGHTFCSLCIQRYL--------TNTSQRCPTCMQEQQISQLR 76
Query: 274 -TIHIENVRQHAVGDTIEFMLLIRE 297
+ +E + +H + +++E
Sbjct: 77 KNVTVETLVEHFSAQRATILRVVKE 101
>sp|P40072|SLX8_YEAST E3 ubiquitin-protein ligase complex SLX5-SLX8 subunit SLX8
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SLX8 PE=1 SV=1
Length = 274
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 216 QCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTI 275
+CPIC E P +T CGH+FC PC+ Q M + F C LC + K++ I
Sbjct: 205 RCPICFEPPETALMTLCGHVFCCPCLFQ---MVNSSRTCRQFGHCALCRSKVYLKDVRLI 261
>sp|Q6BLM3|RAD18_DEBHA Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=RAD18 PE=3 SV=2
Length = 491
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 9/48 (18%)
Query: 216 QCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 263
+C IC E+ P ITSC H FC CI +YL++ CPLC
Sbjct: 35 RCYICKEFLKAPVITSCNHTFCSHCIREYLIVNS---------HCPLC 73
>sp|Q14527|HLTF_HUMAN Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1
SV=2
Length = 1009
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 6/48 (12%)
Query: 216 QCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 263
+C ICL+ P IT C H+FC PCI Q ++ ++ + +CPLC
Sbjct: 759 ECAICLDSLTVPVITHCAHVFCKPCICQ-VIQNEQPH-----AKCPLC 800
>sp|Q6PCN7|HLTF_MOUSE Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1
SV=1
Length = 1003
Score = 46.6 bits (109), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 50/127 (39%), Gaps = 19/127 (14%)
Query: 216 QCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTI 275
+C ICL+ P IT C H+FC PCI Q + + +CPLC I L
Sbjct: 753 ECAICLDSLTFPVITHCAHVFCKPCICQVI------HSEQPHAKCPLCRNEIHGDNLLEC 806
Query: 276 -------------HIENVRQHAVGDTIEFMLLIREKDSFVPSRKNKQESTTGSIDETYDP 322
+E + + ++ +R KD + S Q +T S+ ET
Sbjct: 807 PPEELACDSDKESSMEWKSSSKINALMHALIELRTKDPNIKSLVVSQFTTFLSLIETPLK 866
Query: 323 FSKFTFT 329
S F FT
Sbjct: 867 ASGFVFT 873
>sp|Q6ZWI9|RFPLB_HUMAN Ret finger protein-like 4B OS=Homo sapiens GN=RFPL4B PE=2 SV=2
Length = 263
Score = 46.6 bits (109), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
Query: 215 VQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 263
+ CP+CL++ C SC H+FCF CI +Y+L + D++ CPLC
Sbjct: 9 LSCPVCLDFFSCSISLSCTHVFCFDCIQRYIL-ENHDFRA----MCPLC 52
>sp|Q95216|HLTF_RABIT Helicase-like transcription factor OS=Oryctolagus cuniculus GN=HLTF
PE=1 SV=1
Length = 1005
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 216 QCPICLEYPLCPQITSCGHIFCFPCILQYLL---------MGDEDYKGDCFKRCPLCFVM 266
+C ICL+ P IT C H+FC PCI Q + + D GD CP +
Sbjct: 756 ECAICLDSLTVPVITHCAHVFCKPCICQCIQNEQPHAKCPLCRNDIHGDNLLECPPEELA 815
Query: 267 ISSKELYTIHIENVRQHAVGDTIEFMLLIREKDSFVPSRKNKQESTTGSIDETYDPFSKF 326
S++ ++E + + ++ +R K+ + S Q +T S+ ET S F
Sbjct: 816 CDSEK--KSNMEWTSSSKINALMHALIDLRTKNPNIKSLVVSQFTTFLSLIETPLKASGF 873
Query: 327 TFT 329
FT
Sbjct: 874 VFT 876
>sp|P48754|BRCA1_MOUSE Breast cancer type 1 susceptibility protein homolog OS=Mus musculus
GN=Brca1 PE=1 SV=3
Length = 1812
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 199 LQWEDIICVRYSNPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFK 258
+Q +++ V ++ ++CPICLE P T C HIFC C+L+ L KG
Sbjct: 6 VQIQEVQNVLHAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLL----NQKKGP--S 59
Query: 259 RCPLCFVMISSKEL 272
+CPLC I+ + L
Sbjct: 60 QCPLCKNEITKRSL 73
>sp|Q9FF61|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A member 3-like 1
OS=Arabidopsis thaliana GN=At5g05130 PE=2 SV=1
Length = 881
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 217 CPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 273
CPIC+ P IT C HIFC CILQ L CPLC ++ +LY
Sbjct: 635 CPICISPPTNIIITRCAHIFCRACILQTLQRSK--------PLCPLCRGSLTQSDLY 683
>sp|Q864U1|BRCA1_BOVIN Breast cancer type 1 susceptibility protein homolog OS=Bos taurus
GN=BRCA1 PE=1 SV=1
Length = 1849
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 215 VQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKEL 272
++CPICLE P T C HIFC C+L+ L KG +CPLC I+ + L
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLL----NQKKGP--SQCPLCKNDITKRSL 73
>sp|Q6J6I9|BRCA1_MACMU Breast cancer type 1 susceptibility protein homolog OS=Macaca
mulatta GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 215 VQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKEL 272
++CPICLE P T C HIFC C+L+ L KG +CPLC I+ + L
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCRFCMLKLL----NQKKGP--SQCPLCKNDITKRSL 73
>sp|Q6J6J0|BRCA1_PONPY Breast cancer type 1 susceptibility protein homolog OS=Pongo
pygmaeus GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 215 VQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKEL 272
++CPICLE P T C HIFC C+L+ L KG +CPLC I+ + L
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLL----NQKKGP--SQCPLCKNDITKRSL 73
>sp|P38398|BRCA1_HUMAN Breast cancer type 1 susceptibility protein OS=Homo sapiens
GN=BRCA1 PE=1 SV=2
Length = 1863
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 215 VQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKEL 272
++CPICLE P T C HIFC C+L+ L KG +CPLC I+ + L
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLL----NQKKGP--SQCPLCKNDITKRSL 73
>sp|Q9GKK8|BRCA1_PANTR Breast cancer type 1 susceptibility protein homolog OS=Pan
troglodytes GN=BRCA1 PE=2 SV=2
Length = 1863
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 215 VQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKEL 272
++CPICLE P T C HIFC C+L+ L KG +CPLC I+ + L
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLL----NQKKGP--SQCPLCKNDITKRSL 73
>sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC548.05c PE=4 SV=1
Length = 468
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 14/61 (22%)
Query: 214 SVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 273
+++CPIC E P T CGH +C+ C+L +L K CP C ++LY
Sbjct: 82 TLECPICTEALQRPFTTHCGHTYCYECLLNWLKES---------KSCPTC-----RQKLY 127
Query: 274 T 274
T
Sbjct: 128 T 128
>sp|Q6J6I8|BRCA1_GORGO Breast cancer type 1 susceptibility protein homolog OS=Gorilla
gorilla gorilla GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 215 VQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKEL 272
++CPICLE P T C HIFC C+L+ L KG +CPLC I+ + L
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLL----NQKKGP--SQCPLCKNDITKRSL 73
>sp|Q95153|BRCA1_CANFA Breast cancer type 1 susceptibility protein homolog OS=Canis
familiaris GN=BRCA1 PE=3 SV=1
Length = 1878
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 215 VQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKEL 272
++CPICLE P T C HIFC C+L+ L KG +CPLC I+ + L
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLL----NQRKGP--SQCPLCKNDITKRSL 73
>sp|O54952|BRCA1_RAT Breast cancer type 1 susceptibility protein homolog OS=Rattus
norvegicus GN=Brca1 PE=1 SV=1
Length = 1817
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 215 VQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKEL 272
++CPICLE P T C HIFC C+L+ L KG +CPLC I+ + L
Sbjct: 22 LECPICLELIKEPVSTQCDHIFCKFCMLKLL----NQKKGP--SQCPLCKNEITKRSL 73
>sp|Q8GUK7|RMA3_ARATH E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana GN=RMA3
PE=1 SV=1
Length = 243
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 217 CPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFK-RCPLCFVMISSKELYTI 275
C ICL+ P +T CGH+FC+PCI ++L + D + CP+C I+ L +
Sbjct: 44 CNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVDQHQNNCPVCKSNITITSLVPL 103
Query: 276 H 276
+
Sbjct: 104 Y 104
>sp|Q75EN0|RAD18_ASHGO Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=RAD18 PE=3 SV=1
Length = 443
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 35/88 (39%), Gaps = 29/88 (32%)
Query: 181 VVLDTGDHA----PESMDPDKMLQWEDIICVRYSNPLSVQCPICLEYPLCPQITSCGHIF 236
VV D D A PE D D +L+ C IC + P +T CGH F
Sbjct: 8 VVTDPSDFAGTTIPELADLDSLLR----------------CHICKDMLQTPVLTQCGHTF 51
Query: 237 CFPCILQYLLMGDEDYKGDCFKRCPLCF 264
C CI +YL + RCPLC
Sbjct: 52 CSLCIREYL---------NKESRCPLCL 70
>sp|P43254|COP1_ARATH E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1
PE=1 SV=2
Length = 675
Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Query: 217 CPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 273
CPIC++ +T+CGH FC+ CI+ +L K D CP C +++ +LY
Sbjct: 52 CPICMQIIKDAFLTACGHSFCYMCIITHL-----RNKSD----CPCCSQHLTNNQLY 99
>sp|Q28DS3|RN170_XENTR E3 ubiquitin-protein ligase RNF170 OS=Xenopus tropicalis GN=rnf170
PE=2 SV=1
Length = 257
Score = 43.5 bits (101), Expect = 0.007, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 217 CPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 263
CP+CL+ P T+CGH+FC CI+ Y G + G CP+C
Sbjct: 87 CPVCLQQATFPVETNCGHLFCGSCIIAYWRYG--SWLGAI--NCPIC 129
>sp|Q6ZMN7|PZRN4_HUMAN PDZ domain-containing RING finger protein 4 OS=Homo sapiens
GN=PDZRN4 PE=1 SV=3
Length = 1036
Score = 43.1 bits (100), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 15/65 (23%)
Query: 214 SVQCPIC---LEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSK 270
+++C +C LE PLC T CGH+FC C+L + + +RCPL ++
Sbjct: 15 ALECKLCGQVLEEPLC---TPCGHVFCASCLLPWAVRR---------RRCPLQCQPLAPG 62
Query: 271 ELYTI 275
ELY +
Sbjct: 63 ELYRV 67
>sp|Q5PPX5|RN170_XENLA E3 ubiquitin-protein ligase RNF170 OS=Xenopus laevis GN=rnf170 PE=2
SV=1
Length = 257
Score = 43.1 bits (100), Expect = 0.009, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 217 CPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 263
CP+CL+ P T+CGH+FC CI+ Y G + G CP+C
Sbjct: 87 CPVCLQQATFPVETNCGHLFCGSCIIAYWRYG--TWLGAI--NCPIC 129
>sp|Q5ACX1|RAD5_CANAL DNA repair protein RAD5 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=RAD5 PE=3 SV=1
Length = 1084
Score = 43.1 bits (100), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Query: 216 QCPICLEYPLCPQ---ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKEL 272
+C IC + P+ +T C H FC CIL++L E K K CP C IS +L
Sbjct: 815 ECSICTQVPIPYSEMVVTPCAHTFCLSCILEHLDFQKELKKE---KLCPNCRSPISKYQL 871
Query: 273 YTIHIENVRQHAVGDTIEF 291
+ I Q G+ I F
Sbjct: 872 FRIR----NQPTKGNEIRF 886
>sp|O74747|RAD18_SCHPO Postreplication repair E3 ubiquitin-protein ligase rad18
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rhp18 PE=3 SV=1
Length = 387
Score = 42.7 bits (99), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 20/32 (62%)
Query: 214 SVQCPICLEYPLCPQITSCGHIFCFPCILQYL 245
S++C IC EY P ITSC H FC CI YL
Sbjct: 26 SLRCLICHEYFRAPLITSCSHTFCSFCIRDYL 57
>sp|Q7T308|RN168_DANRE E3 ubiquitin-protein ligase RNF168 OS=Danio rerio GN=rnf168 PE=2
SV=1
Length = 474
Score = 42.7 bits (99), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 217 CPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 269
CP+CLE L P C H FC PC L+ + D C CPLC +S+
Sbjct: 26 CPVCLEIFLEPVTLPCMHTFCKPCFLETV-----DKSNMC---CPLCRKRVST 70
>sp|Q9BZY9|TRI31_HUMAN E3 ubiquitin-protein ligase TRIM31 OS=Homo sapiens GN=TRIM31 PE=1
SV=2
Length = 425
Score = 42.7 bits (99), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 10/59 (16%)
Query: 208 RYSNPL--SVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDC-FKRCPLC 263
++ N L V CPICL+ P CGH FC CI Q +G+ C F +CPLC
Sbjct: 5 QFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQ---IGE----TSCGFFKCPLC 56
>sp|F1MK05|RN170_BOVIN E3 ubiquitin-protein ligase RNF170 OS=Bos taurus GN=RNF170 PE=3
SV=2
Length = 259
Score = 42.7 bits (99), Expect = 0.012, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 217 CPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 263
CPICL P T+CGH+FC CI+ Y G + G CP+C
Sbjct: 88 CPICLHQASLPVETNCGHLFCGTCIVAYWRYG--SWLGAI--SCPIC 130
>sp|Q96K19|RN170_HUMAN E3 ubiquitin-protein ligase RNF170 OS=Homo sapiens GN=RNF170 PE=1
SV=2
Length = 258
Score = 42.7 bits (99), Expect = 0.012, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 217 CPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 263
CPICL P T+CGH+FC CI+ Y G + G CP+C
Sbjct: 87 CPICLHQASFPVETNCGHLFCGACIIAYWRYG--SWLGAI--SCPIC 129
>sp|Q9UUF0|PEX10_SCHPO Peroxisome biogenesis factor 10 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pas4 PE=3 SV=1
Length = 306
Score = 42.0 bits (97), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 216 QCPICLEYPLCPQITSCGHIFCFPCI 241
+C +C+E+ CP T CGHIFC+ CI
Sbjct: 255 KCSLCMEFIHCPAATECGHIFCWSCI 280
>sp|P29503|NEUR_DROME Protein neuralized OS=Drosophila melanogaster GN=neur PE=1 SV=2
Length = 754
Score = 42.0 bits (97), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 200 QWEDIICVRYSNPLSVQCPICLEYPLCPQITSCGHI-FCFPCILQYLLMGDEDYKGDCFK 258
+W+D + + S S +C IC E P+ + CGH+ C+ C + E ++G
Sbjct: 684 KWKDSLSDQQSTDSSAECTICYENPIDSVLYMCGHMCMCYDCAI-------EQWRGVGGG 736
Query: 259 RCPLCFVMI 267
+CPLC +I
Sbjct: 737 QCPLCRAVI 745
>sp|Q7SZN2|RN170_DANRE E3 ubiquitin-protein ligase RNF170 OS=Danio rerio GN=rnf170 PE=2
SV=1
Length = 266
Score = 42.0 bits (97), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 217 CPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 268
CP+CL+ + P T+CGH+FC CI+ Y G + G CP+C M++
Sbjct: 88 CPVCLQQAVLPVETNCGHLFCGSCIIAYWRYG--TWLGA--ISCPICRQMVT 135
>sp|Q06554|IRC20_YEAST Uncharacterized ATP-dependent helicase IRC20 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IRC20 PE=1
SV=1
Length = 1556
Score = 41.6 bits (96), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 9/65 (13%)
Query: 215 VQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 274
+ C ICL I CGH FC CIL +L +CP+C S E+Y
Sbjct: 1237 LSCSICLGEVEIGAIIKCGHYFCKSCILTWL---------RAHSKCPICKGFCSISEVYN 1287
Query: 275 IHIEN 279
+N
Sbjct: 1288 FKFKN 1292
>sp|Q99942|RNF5_HUMAN E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1
Length = 180
Score = 41.6 bits (96), Expect = 0.027, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 214 SVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 273
+ +C ICLE ++ CGH++C+PC+ Q+L E + CP+C IS +++
Sbjct: 24 TFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPER------QECPVCKAGISREKVV 77
Query: 274 TIH 276
++
Sbjct: 78 PLY 80
>sp|Q24746|NEUR_DROVI Protein neuralized OS=Drosophila virilis GN=neur PE=4 SV=1
Length = 747
Score = 41.2 bits (95), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 200 QWEDIICVRYSNPLSVQCPICLEYPLCPQITSCGHI-FCFPCILQYLLMGDEDYKGDCFK 258
+W+D + + S S +C IC E P+ + CGH+ C+ C + E ++G
Sbjct: 677 KWKDSLSDQQSTDSSAECTICYENPIDSVLYMCGHMCMCYDCAI-------EQWRGVGGG 729
Query: 259 RCPLCFVMI 267
+CPLC +I
Sbjct: 730 QCPLCRAVI 738
>sp|O64425|RMA1_ARATH E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana GN=RMA1
PE=1 SV=1
Length = 249
Score = 41.2 bits (95), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 217 CPICLEYPLCPQITSCGHIFCFPCILQYL----LMGDEDYKGDCFKRCPLCFVMISSKEL 272
C ICL+ P +T CGH+FC+PCI ++L ++Y+ ++CP+C +S L
Sbjct: 48 CNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRH--RQCPVCKSKVSHSTL 105
Query: 273 YTIH 276
++
Sbjct: 106 VPLY 109
>sp|Q3C1W6|YK031_HUMAN Tripartite motif-containing protein LOC642612 OS=Homo sapiens PE=2
SV=2
Length = 446
Score = 41.2 bits (95), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 215 VQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFK 258
+ CPICL Y + P CGH FC PC YL D CF+
Sbjct: 13 LTCPICLNYFIDPVTIDCGHSFCRPCF--YLNWQDIPILTQCFE 54
>sp|Q8IWZ4|TRI48_HUMAN Tripartite motif-containing protein 48 OS=Homo sapiens GN=TRIM48
PE=2 SV=2
Length = 208
Score = 40.8 bits (94), Expect = 0.039, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 215 VQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 274
+ CPIC+ Y + P CGH FC PC YL D CF+ C I + L T
Sbjct: 13 LTCPICMNYFIDPVTIDCGHSFCRPCF--YLNWQDIPILTQCFE----CIKTIQQRNLKT 66
>sp|Q54N40|PEX12_DICDI Putative peroxisome assembly protein 12 OS=Dictyostelium discoideum
GN=pex12 PE=3 SV=1
Length = 459
Score = 40.8 bits (94), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 217 CPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIH 276
CP+CL+ P I G +FC+PCI Y+ +E +CP+ F+ ++++L I+
Sbjct: 406 CPLCLKERTNPTICGSGFVFCYPCIFGYV---NEH------SKCPITFLPTNTEQLRKIY 456
>sp|Q92021|NF7B_XENLA Nuclear factor 7, brain OS=Xenopus laevis PE=1 SV=1
Length = 609
Score = 40.8 bits (94), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 215 VQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 274
+ CP+C+E P + +CGH FC CI D+ ++G CP C I+ ++ YT
Sbjct: 143 LTCPLCVELFKDPVMVACGHNFCRSCI-------DKAWEGQSSFACPECRESITDRK-YT 194
Query: 275 IH 276
I+
Sbjct: 195 IN 196
>sp|Q91431|NF7O_XENLA Nuclear factor 7, ovary OS=Xenopus laevis PE=2 SV=1
Length = 610
Score = 40.8 bits (94), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 215 VQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 274
+ CP+C+E P + +CGH FC CI D+ ++G CP C I+ ++ YT
Sbjct: 144 LTCPLCVELFKDPVMVACGHNFCRSCI-------DKVWEGQSSFACPECKESITDRK-YT 195
Query: 275 IH 276
I+
Sbjct: 196 IN 197
>sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1
PE=1 SV=1
Length = 252
Score = 40.8 bits (94), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 217 CPICLEYPLCPQITSCGHIFCFPCILQYLLMG-----DEDYKGDCFKRCPLCFVMISSKE 271
C ICL+ P IT CGH++C+PCI +++ + D + +CP+C +S K
Sbjct: 41 CNICLDCVHEPVITLCGHLYCWPCIYKWIYFQSVSSENSDQQQ---PQCPVCKAEVSEKT 97
Query: 272 LYTIH 276
L ++
Sbjct: 98 LIPLY 102
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.128 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 296,762,451
Number of Sequences: 539616
Number of extensions: 12945261
Number of successful extensions: 46704
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 447
Number of HSP's that attempted gapping in prelim test: 40785
Number of HSP's gapped (non-prelim): 3450
length of query: 789
length of database: 191,569,459
effective HSP length: 126
effective length of query: 663
effective length of database: 123,577,843
effective search space: 81932109909
effective search space used: 81932109909
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)