Query 003879
Match_columns 789
No_of_seqs 375 out of 1645
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 13:38:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003879.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003879hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2164 Predicted E3 ubiquitin 100.0 4.6E-62 9.9E-67 535.9 21.4 414 115-682 96-513 (513)
2 PLN03208 E3 ubiquitin-protein 99.2 1.8E-11 3.8E-16 123.4 6.7 71 210-280 14-91 (193)
3 KOG0823 Predicted E3 ubiquitin 99.2 9.3E-12 2E-16 127.4 4.0 63 213-281 46-108 (230)
4 PF15227 zf-C3HC4_4: zinc fing 99.0 3.6E-10 7.8E-15 87.7 3.9 42 217-263 1-42 (42)
5 KOG0317 Predicted E3 ubiquitin 99.0 2.6E-10 5.6E-15 120.0 3.8 54 211-273 236-289 (293)
6 KOG0320 Predicted E3 ubiquitin 99.0 2.2E-10 4.9E-15 112.9 2.7 55 214-277 131-187 (187)
7 smart00504 Ubox Modified RING 98.8 3.1E-09 6.8E-14 88.4 4.8 51 215-274 2-52 (63)
8 PF13923 zf-C3HC4_2: Zinc fing 98.8 4.7E-09 1E-13 79.9 3.4 38 217-263 1-39 (39)
9 COG5574 PEX10 RING-finger-cont 98.8 3.1E-09 6.7E-14 110.7 2.8 54 211-272 212-266 (271)
10 PF00097 zf-C3HC4: Zinc finger 98.6 3E-08 6.6E-13 75.9 3.7 40 217-263 1-41 (41)
11 PF13920 zf-C3HC4_3: Zinc fing 98.6 2.8E-08 6E-13 79.7 3.5 46 214-268 2-48 (50)
12 KOG0978 E3 ubiquitin ligase in 98.6 1.1E-08 2.3E-13 119.9 1.1 57 213-277 642-698 (698)
13 TIGR00599 rad18 DNA repair pro 98.6 3.3E-08 7.1E-13 110.5 4.6 54 212-274 24-77 (397)
14 PF13639 zf-RING_2: Ring finge 98.6 2.5E-08 5.5E-13 77.7 2.3 40 216-264 2-44 (44)
15 PF04564 U-box: U-box domain; 98.6 4.4E-08 9.6E-13 84.8 3.9 55 212-274 2-56 (73)
16 PHA02929 N1R/p28-like protein; 98.6 3.8E-08 8.3E-13 103.2 4.0 47 213-268 173-227 (238)
17 KOG0287 Postreplication repair 98.5 1.6E-08 3.5E-13 107.9 0.1 56 213-277 22-77 (442)
18 PHA02926 zinc finger-like prot 98.5 9.2E-08 2E-12 97.8 3.8 54 212-268 168-230 (242)
19 PF13445 zf-RING_UBOX: RING-ty 98.4 1.7E-07 3.7E-12 73.1 3.1 39 217-261 1-43 (43)
20 cd00162 RING RING-finger (Real 98.4 3.2E-07 6.9E-12 69.9 3.5 43 216-266 1-44 (45)
21 COG5432 RAD18 RING-finger-cont 98.4 1.3E-07 2.8E-12 99.3 1.6 53 213-274 24-76 (391)
22 smart00184 RING Ring finger. E 98.3 5.9E-07 1.3E-11 66.1 3.5 39 217-263 1-39 (39)
23 PF14634 zf-RING_5: zinc-RING 98.3 5.5E-07 1.2E-11 70.4 2.8 41 216-265 1-44 (44)
24 TIGR00570 cdk7 CDK-activating 98.3 6.5E-07 1.4E-11 96.7 4.1 59 213-279 2-65 (309)
25 PF12678 zf-rbx1: RING-H2 zinc 98.1 2.3E-06 4.9E-11 74.3 4.3 41 215-264 20-73 (73)
26 KOG2177 Predicted E3 ubiquitin 98.0 1.6E-06 3.6E-11 90.5 1.5 45 212-265 11-55 (386)
27 PF14835 zf-RING_6: zf-RING of 98.0 1.6E-06 3.4E-11 72.7 0.1 49 214-273 7-56 (65)
28 COG5243 HRD1 HRD ubiquitin lig 97.9 4.6E-06 9.9E-11 90.5 2.5 62 194-267 270-344 (491)
29 KOG0311 Predicted E3 ubiquitin 97.9 1.4E-06 3E-11 94.3 -1.9 47 213-267 42-89 (381)
30 KOG2879 Predicted E3 ubiquitin 97.8 1.5E-05 3.2E-10 83.9 3.4 49 213-268 238-287 (298)
31 KOG4172 Predicted E3 ubiquitin 97.7 9.1E-06 2E-10 65.7 0.5 46 215-268 8-54 (62)
32 KOG0802 E3 ubiquitin ligase [P 97.6 2E-05 4.3E-10 92.6 2.2 51 213-272 290-345 (543)
33 PF12861 zf-Apc11: Anaphase-pr 97.6 6.1E-05 1.3E-09 67.0 3.9 34 229-268 49-82 (85)
34 COG5540 RING-finger-containing 97.6 4.5E-05 9.8E-10 81.2 3.1 48 213-268 322-372 (374)
35 KOG0824 Predicted E3 ubiquitin 97.5 4.2E-05 9.1E-10 81.6 2.4 52 213-272 6-57 (324)
36 PF11789 zf-Nse: Zinc-finger o 97.5 6.7E-05 1.5E-09 62.2 2.3 43 213-262 10-53 (57)
37 KOG4628 Predicted E3 ubiquitin 97.4 6.6E-05 1.4E-09 82.6 2.1 45 215-267 230-277 (348)
38 KOG2660 Locus-specific chromos 97.4 4.7E-05 1E-09 82.3 0.3 48 214-270 15-63 (331)
39 KOG4159 Predicted E3 ubiquitin 97.3 9.4E-05 2E-09 83.2 2.3 49 212-269 82-130 (398)
40 COG5222 Uncharacterized conser 97.1 0.00013 2.9E-09 77.3 0.7 79 175-265 225-318 (427)
41 COG5152 Uncharacterized conser 97.1 0.00017 3.7E-09 72.7 1.0 45 214-267 196-240 (259)
42 KOG1785 Tyrosine kinase negati 97.0 0.00038 8.3E-09 76.5 2.8 51 214-271 369-419 (563)
43 KOG1813 Predicted E3 ubiquitin 97.0 0.00026 5.7E-09 75.5 1.1 45 214-267 241-285 (313)
44 KOG4692 Predicted E3 ubiquitin 97.0 0.00042 9.2E-09 75.1 2.6 51 210-269 418-468 (489)
45 KOG1002 Nucleotide excision re 96.7 0.0006 1.3E-08 77.2 1.6 54 212-269 534-587 (791)
46 KOG4265 Predicted E3 ubiquitin 96.5 0.0017 3.6E-08 71.3 3.1 46 214-268 290-336 (349)
47 KOG0297 TNF receptor-associate 96.5 0.0013 2.7E-08 74.6 1.9 53 212-273 19-72 (391)
48 KOG0828 Predicted E3 ubiquitin 96.4 0.0013 2.9E-08 74.1 1.9 48 213-268 570-634 (636)
49 KOG3039 Uncharacterized conser 96.4 0.0026 5.7E-08 66.3 3.6 54 213-275 220-277 (303)
50 PF04641 Rtf2: Rtf2 RING-finge 96.4 0.0039 8.5E-08 66.9 4.9 53 212-274 111-167 (260)
51 KOG1001 Helicase-like transcri 96.4 0.00088 1.9E-08 80.4 -0.1 52 215-274 455-506 (674)
52 KOG0827 Predicted E3 ubiquitin 96.3 0.0022 4.9E-08 70.6 2.4 52 215-272 5-60 (465)
53 KOG0826 Predicted E3 ubiquitin 96.2 0.0018 3.8E-08 70.2 1.3 54 211-273 297-351 (357)
54 KOG1571 Predicted E3 ubiquitin 96.1 0.0027 5.8E-08 69.8 2.1 44 213-268 304-347 (355)
55 KOG1039 Predicted E3 ubiquitin 96.1 0.003 6.5E-08 70.0 2.4 54 212-267 159-220 (344)
56 KOG1645 RING-finger-containing 96.1 0.0014 3.1E-08 72.6 -0.2 54 214-274 4-62 (463)
57 KOG4275 Predicted E3 ubiquitin 96.0 0.0019 4E-08 68.9 0.4 41 214-267 300-341 (350)
58 KOG0825 PHD Zn-finger protein 96.0 0.0014 3E-08 77.2 -0.6 51 213-272 122-175 (1134)
59 KOG0804 Cytoplasmic Zn-finger 95.8 0.0031 6.7E-08 70.8 0.9 45 213-268 174-222 (493)
60 COG5219 Uncharacterized conser 95.6 0.0037 8.1E-08 74.9 0.7 48 213-267 1468-1522(1525)
61 PF11793 FANCL_C: FANCL C-term 95.3 0.0051 1.1E-07 53.1 0.1 55 214-268 2-66 (70)
62 KOG4739 Uncharacterized protei 94.5 0.0078 1.7E-07 63.1 -0.9 43 215-268 4-48 (233)
63 KOG2932 E3 ubiquitin ligase in 94.1 0.018 3.9E-07 62.0 0.9 43 214-267 90-133 (389)
64 KOG2817 Predicted E3 ubiquitin 94.1 0.032 6.9E-07 62.3 2.8 59 212-276 332-393 (394)
65 smart00744 RINGv The RING-vari 94.1 0.05 1.1E-06 43.8 3.1 42 216-264 1-49 (49)
66 PF07800 DUF1644: Protein of u 93.7 0.073 1.6E-06 52.7 4.0 35 213-247 1-48 (162)
67 KOG1734 Predicted RING-contain 93.2 0.024 5.3E-07 60.1 -0.1 55 213-274 223-287 (328)
68 KOG1814 Predicted E3 ubiquitin 92.9 0.046 1E-06 61.1 1.6 50 213-263 183-235 (445)
69 KOG3800 Predicted E3 ubiquitin 92.9 0.068 1.5E-06 57.5 2.7 51 216-274 2-57 (300)
70 KOG4185 Predicted E3 ubiquitin 92.6 0.075 1.6E-06 57.8 2.7 45 215-267 4-54 (296)
71 KOG4362 Transcriptional regula 92.6 0.017 3.6E-07 68.7 -2.6 58 210-273 17-74 (684)
72 KOG1493 Anaphase-promoting com 92.3 0.055 1.2E-06 47.2 0.9 33 230-268 49-81 (84)
73 KOG3039 Uncharacterized conser 92.3 0.1 2.2E-06 54.9 2.9 34 214-247 43-76 (303)
74 COG5109 Uncharacterized conser 91.9 0.11 2.4E-06 56.3 2.8 74 195-274 309-393 (396)
75 PF14447 Prok-RING_4: Prokaryo 91.8 0.1 2.2E-06 43.0 1.8 47 214-271 7-53 (55)
76 KOG4367 Predicted Zn-finger pr 91.7 0.079 1.7E-06 59.3 1.4 37 212-248 2-38 (699)
77 COG5236 Uncharacterized conser 91.5 0.11 2.4E-06 56.8 2.3 47 213-266 60-106 (493)
78 COG5194 APC11 Component of SCF 91.1 0.17 3.8E-06 44.5 2.7 29 230-267 52-80 (88)
79 KOG3161 Predicted E3 ubiquitin 90.5 0.082 1.8E-06 61.8 0.2 32 215-246 12-47 (861)
80 COG5175 MOT2 Transcriptional r 89.9 0.25 5.5E-06 54.0 3.2 57 213-277 13-73 (480)
81 PF05290 Baculo_IE-1: Baculovi 89.8 0.29 6.3E-06 47.2 3.2 51 213-269 79-133 (140)
82 PF10377 ATG11: Autophagy-rela 89.4 0.65 1.4E-05 44.9 5.3 65 535-610 62-127 (129)
83 PF14570 zf-RING_4: RING/Ubox 89.2 0.28 6.1E-06 39.4 2.2 43 217-267 1-47 (48)
84 COG5220 TFB3 Cdk activating ki 89.0 0.12 2.6E-06 54.1 0.1 58 213-278 9-74 (314)
85 KOG3002 Zn finger protein [Gen 88.7 0.29 6.2E-06 53.8 2.6 44 213-268 47-91 (299)
86 PHA03096 p28-like protein; Pro 88.3 0.24 5.2E-06 54.0 1.8 45 215-265 179-231 (284)
87 KOG0298 DEAD box-containing he 87.9 0.14 3E-06 64.3 -0.4 44 213-265 1152-1196(1394)
88 KOG4445 Uncharacterized conser 87.8 0.085 1.8E-06 56.8 -2.0 56 213-268 114-186 (368)
89 KOG1941 Acetylcholine receptor 86.7 0.24 5.2E-06 55.2 0.6 46 213-265 364-413 (518)
90 KOG1952 Transcription factor N 86.2 3.5 7.5E-05 50.5 9.7 55 210-266 187-245 (950)
91 KOG1815 Predicted E3 ubiquitin 86.0 0.66 1.4E-05 53.7 3.8 62 213-275 69-133 (444)
92 KOG3579 Predicted E3 ubiquitin 85.8 0.39 8.4E-06 51.6 1.5 37 213-249 267-307 (352)
93 KOG1428 Inhibitor of type V ad 84.7 0.65 1.4E-05 58.7 2.9 60 213-272 3485-3548(3738)
94 KOG2930 SCF ubiquitin ligase, 83.3 0.7 1.5E-05 42.7 1.8 26 231-265 80-105 (114)
95 KOG0825 PHD Zn-finger protein 83.0 0.69 1.5E-05 55.6 2.1 52 213-267 95-153 (1134)
96 KOG3970 Predicted E3 ubiquitin 82.9 0.89 1.9E-05 47.4 2.6 53 214-267 50-104 (299)
97 PF10367 Vps39_2: Vacuolar sor 82.8 0.54 1.2E-05 42.8 1.0 30 213-242 77-108 (109)
98 KOG2114 Vacuolar assembly/sort 82.8 0.66 1.4E-05 56.3 1.9 39 215-265 841-880 (933)
99 PF03854 zf-P11: P-11 zinc fin 80.9 0.77 1.7E-05 36.8 1.1 33 228-269 14-47 (50)
100 KOG1812 Predicted E3 ubiquitin 80.7 0.82 1.8E-05 52.0 1.6 57 213-272 145-207 (384)
101 PF02891 zf-MIZ: MIZ/SP-RING z 79.8 2.1 4.6E-05 34.6 3.3 46 215-265 3-49 (50)
102 KOG2034 Vacuolar sorting prote 78.9 0.86 1.9E-05 55.8 1.1 35 214-248 817-853 (911)
103 KOG1100 Predicted E3 ubiquitin 74.1 1.7 3.7E-05 45.4 1.6 38 217-267 161-199 (207)
104 PF05883 Baculo_RING: Baculovi 73.3 1.3 2.8E-05 43.1 0.5 33 214-246 26-67 (134)
105 COG5183 SSM4 Protein involved 71.9 3.9 8.3E-05 49.7 3.9 73 213-300 11-90 (1175)
106 PF10272 Tmpp129: Putative tra 71.6 2.4 5.3E-05 47.7 2.2 41 232-272 311-355 (358)
107 PF08746 zf-RING-like: RING-li 69.1 5.1 0.00011 31.4 2.9 40 217-263 1-43 (43)
108 KOG1940 Zn-finger protein [Gen 68.8 2.8 6.1E-05 45.5 1.9 43 214-265 158-204 (276)
109 KOG3113 Uncharacterized conser 66.4 6 0.00013 42.2 3.6 49 213-272 110-162 (293)
110 KOG3799 Rab3 effector RIM1 and 66.2 3.8 8.2E-05 39.7 1.9 34 209-247 60-94 (169)
111 PHA02825 LAP/PHD finger-like p 60.2 9.8 0.00021 38.1 3.6 48 212-267 6-58 (162)
112 KOG1729 FYVE finger containing 58.9 2.3 4.9E-05 46.6 -1.1 59 209-269 163-226 (288)
113 PF07191 zinc-ribbons_6: zinc- 58.2 0.72 1.6E-05 40.0 -4.0 40 215-268 2-41 (70)
114 KOG3899 Uncharacterized conser 57.8 7.1 0.00015 42.5 2.4 41 232-274 325-371 (381)
115 PF10571 UPF0547: Uncharacteri 55.8 5.7 0.00012 28.0 0.9 21 216-236 2-24 (26)
116 PHA02862 5L protein; Provision 53.1 13 0.00028 36.8 3.1 46 215-268 3-53 (156)
117 PF12906 RINGv: RING-variant d 50.7 9.5 0.00021 30.4 1.5 40 217-263 1-47 (47)
118 KOG2068 MOT2 transcription fac 50.3 19 0.00041 40.1 4.2 45 214-267 249-297 (327)
119 KOG3268 Predicted E3 ubiquitin 47.4 13 0.00027 37.9 2.1 55 214-268 165-228 (234)
120 KOG2979 Protein involved in DN 46.2 10 0.00022 40.7 1.4 43 214-263 176-219 (262)
121 PF10497 zf-4CXXC_R1: Zinc-fin 45.5 15 0.00033 34.3 2.3 35 233-267 37-71 (105)
122 KOG1812 Predicted E3 ubiquitin 44.1 10 0.00022 43.3 1.1 34 214-247 306-344 (384)
123 KOG1356 Putative transcription 43.9 8 0.00017 47.5 0.2 69 192-269 212-283 (889)
124 TIGR01562 FdhE formate dehydro 43.4 6.2 0.00013 43.7 -0.8 43 214-265 184-232 (305)
125 KOG3842 Adaptor protein Pellin 41.6 38 0.00083 37.4 4.8 56 213-269 340-415 (429)
126 KOG2169 Zn-finger transcriptio 38.5 20 0.00043 43.7 2.3 55 214-273 306-361 (636)
127 KOG2231 Predicted E3 ubiquitin 37.9 24 0.00051 42.9 2.8 50 216-268 2-52 (669)
128 PF12660 zf-TFIIIC: Putative z 37.5 3.4 7.5E-05 38.1 -3.3 47 215-267 15-65 (99)
129 COG0068 HypF Hydrogenase matur 36.3 19 0.0004 43.9 1.6 55 211-267 98-183 (750)
130 PF04710 Pellino: Pellino; In 36.0 12 0.00026 42.5 0.0 48 213-266 276-337 (416)
131 smart00064 FYVE Protein presen 35.0 28 0.00061 29.3 2.1 34 214-247 10-47 (68)
132 KOG3842 Adaptor protein Pellin 34.1 21 0.00045 39.4 1.4 46 214-265 290-349 (429)
133 KOG1150 Predicted molecular ch 33.5 52 0.0011 34.4 4.0 29 623-651 166-194 (250)
134 KOG1818 Membrane trafficking a 33.2 9.7 0.00021 45.7 -1.3 65 192-267 153-221 (634)
135 PF04216 FdhE: Protein involve 32.3 6.5 0.00014 42.9 -2.8 44 214-266 172-220 (290)
136 PF01363 FYVE: FYVE zinc finge 30.9 13 0.00029 31.4 -0.5 33 213-245 8-44 (69)
137 KOG0289 mRNA splicing factor [ 30.7 43 0.00092 38.6 3.2 54 216-278 2-56 (506)
138 KOG1815 Predicted E3 ubiquitin 30.2 36 0.00079 39.5 2.7 31 215-245 164-197 (444)
139 PRK03564 formate dehydrogenase 29.8 16 0.00034 40.6 -0.4 43 214-265 187-234 (309)
140 COG3813 Uncharacterized protei 29.0 35 0.00076 29.9 1.7 37 227-274 22-58 (84)
141 PF04710 Pellino: Pellino; In 29.0 18 0.0004 41.1 0.0 56 214-269 328-402 (416)
142 cd00065 FYVE FYVE domain; Zinc 28.3 35 0.00076 27.5 1.5 33 215-247 3-39 (57)
143 KOG3451 Uncharacterized conser 27.8 85 0.0018 27.2 3.7 37 598-634 27-64 (71)
144 COG4647 AcxC Acetone carboxyla 27.6 36 0.00077 33.0 1.6 38 198-239 45-82 (165)
145 KOG1029 Endocytic adaptor prot 27.4 84 0.0018 38.8 4.9 16 618-633 320-335 (1118)
146 KOG0309 Conserved WD40 repeat- 27.1 52 0.0011 40.3 3.2 35 215-249 1029-1065(1081)
147 KOG4185 Predicted E3 ubiquitin 27.1 12 0.00027 40.6 -1.8 44 215-266 208-265 (296)
148 KOG2789 Putative Zn-finger pro 26.8 28 0.0006 39.6 0.9 33 214-246 74-108 (482)
149 PRK04023 DNA polymerase II lar 26.7 42 0.00092 42.5 2.5 55 213-278 625-684 (1121)
150 PF06906 DUF1272: Protein of u 26.4 55 0.0012 27.4 2.3 45 215-270 6-54 (57)
151 KOG4718 Non-SMC (structural ma 26.1 33 0.00072 36.0 1.2 44 214-266 181-225 (235)
152 KOG0883 Cyclophilin type, U bo 25.8 1.1E+02 0.0023 35.1 5.1 57 214-279 40-96 (518)
153 KOG1819 FYVE finger-containing 25.4 30 0.00065 40.2 0.8 31 210-240 897-931 (990)
154 KOG1829 Uncharacterized conser 24.7 26 0.00056 42.0 0.2 40 213-264 510-557 (580)
155 KOG1842 FYVE finger-containing 24.5 30 0.00065 39.9 0.6 32 211-242 177-212 (505)
156 PF05605 zf-Di19: Drought indu 23.8 38 0.00082 27.5 0.9 12 214-225 2-13 (54)
157 TIGR00143 hypF [NiFe] hydrogen 22.8 47 0.001 41.1 1.9 56 211-267 65-150 (711)
158 PF07975 C1_4: TFIIH C1-like d 22.1 49 0.0011 27.2 1.2 26 230-264 25-50 (51)
159 KOG0314 Predicted E3 ubiquitin 21.3 23 0.0005 41.1 -1.1 47 210-266 215-264 (448)
160 KOG0827 Predicted E3 ubiquitin 20.8 12 0.00025 42.4 -3.4 50 214-272 196-249 (465)
No 1
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-62 Score=535.87 Aligned_cols=414 Identities=33% Similarity=0.518 Sum_probs=259.8
Q ss_pred cccCCCcccCCCCCCccccCCcceecccccCCCCCCCCCCCCCCccccCCCCCCchhhhccccceeeeCCCCCCCCCCCC
Q 003879 115 QQRAGPVASQGSSGRRAQTISGNHLLNFQYDPISRPQYRMPPPPARRQRKIRPYNKDLFLQANYKFVVLDTGDHAPESMD 194 (789)
Q Consensus 115 ~~~~~~~~~~~~~~rk~q~~siNHLLnf~~~~~~r~~~~~~~~~~Rr~~k~~~~~K~~fl~an~rFvV~~~~dy~~~~~d 194 (789)
+.+.|... .-.|+++|+ ++||||||+|.|++ +..+..++ .++...+..+.+ +||+|||+|||+ .++|..+..|
T Consensus 96 e~~~~~~~--~e~~~a~~v-s~nhllnf~~~~~~-~~~q~~~p-~~~~~~~~~~~q-~f~~any~fvv~-~gd~~~qn~d 168 (513)
T KOG2164|consen 96 ESTLGGVS--PEVNLANQV-SLNHLLNFQYAPIE-NSHQSSSP-PRRNRRRDEREQ-TFLNANYRFVVD-EGDYVLQNTD 168 (513)
T ss_pred chhccCcc--hhhhhhhhh-hhhhhhheeecccc-hhhccCCC-ccccccccccch-hhhccchheeec-ccchhhhccC
Confidence 34444442 345688888 99999999999987 54333222 222222222222 999999999999 9999999999
Q ss_pred cCccCCccceeeeecCCCCcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCcee
Q 003879 195 PDKMLQWEDIICVRYSNPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 274 (789)
Q Consensus 195 pd~~l~w~~v~qv~~~~~e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 274 (789)
||.+++|++|.||.+.. +..|||||+.+..|++|.|||+||++||++||.... .+.++.||+||..|..++|++
T Consensus 169 pD~p~~~e~i~qv~~~t--~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~----~~~~~~CPiC~s~I~~kdl~p 242 (513)
T KOG2164|consen 169 PDAPVDWEDIFQVYGST--DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSA----IKGPCSCPICRSTITLKDLLP 242 (513)
T ss_pred CccccchHHhhhhhcCc--CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhc----ccCCccCCchhhhccccceee
Confidence 99999999999988766 899999999999999999999999999999999862 236899999999999999999
Q ss_pred EEeecccccCCCCceEEEEeecCCCCcccCccCccCCCCCCCCCccccCCccccccchhHHHHHHHhhhHHHHHhhcCCc
Q 003879 275 IHIENVRQHAVGDTIEFMLLIREKDSFVPSRKNKQESTTGSIDETYDPFSKFTFTSDVDLSVRKAMSDLDGWLAKADSGL 354 (789)
Q Consensus 275 v~~~~~~~~~~gd~v~l~Lm~R~~~Sll~~~~~~~~~~~~~~~~~~~~FSkf~~asd~~~~v~~~~~~L~~~~~~~~~~~ 354 (789)
|++.+.+...+ +.++.++.| +....+. +-.+.-.....|++ +...+++.++.. .| ..+.
T Consensus 243 v~~e~~qkke~-----l~~~~~~ng-~~~~~r~-------F~~d~~r~~p~fl~--dl~~~a~~~i~~--~~----~~~~ 301 (513)
T KOG2164|consen 243 VFIEDDQKKEE-----LKLHQDPNG-IPDYNRR-------FSGDPARFVPDFLM--DLPTYARINIRN--MF----NNHI 301 (513)
T ss_pred eeeccccccHH-----HHHHhcccC-CCccccc-------eecCcccccHHHHH--hHHHHHHHHHHH--hh----cccc
Confidence 99987643211 566666665 1111111 00000000111221 111222222211 00 0000
Q ss_pred hhcccc----hHHHHHHHHHHHHHHHHHHhhhccCCCcccCCCCCCCCcccccccccccCCCCccCCCCcchhhhhhhhh
Q 003879 355 VDDLEK----LPYVCAAMEQLEQRKKYWNERRASGSDKASNNADGQTGFHGLQSTKIASNPSHLLNTLSPDISEQNQKLT 430 (789)
Q Consensus 355 ~~d~e~----~~fi~~al~~le~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (789)
..-+.. ..+|.+++..+..++. . + .+.++... ..++.+..+.
T Consensus 302 l~i~~~~~i~~v~i~~~~~~~~~~~~--------~----------------~----q~~~~~is--~lde~~~~~l---- 347 (513)
T KOG2164|consen 302 LTIVDQVCIAAVFICQYLSFLLPRRM--------V----------------P----QAIKGRIS--FLDECTNDQL---- 347 (513)
T ss_pred eeehhhHhHHHHHHHHHhcccchhhh--------c----------------c----hhhcCccC--chhhhcchhh----
Confidence 000000 0111111111111100 0 0 00000000 0000000000
Q ss_pred hhccCCCCCCCCCCCCCcCCCCCcccccccCCcchhhhhhhhccccccCCcchhhhhhhccccccCCccccccccccccc
Q 003879 431 KLTLNKPDSGSASGQNSALGELSDCDETSLSSSYDESKSMQANETSLSSSYDESKSLQANETSLSSSYDESKSMQANETS 510 (789)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~s~l~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~ 510 (789)
.+++.+..|. +. ..+...+.+ +
T Consensus 348 -----------------~ls~~s~~dn-------------------------e~------n~s~~~~~~--------~-- 369 (513)
T KOG2164|consen 348 -----------------ILSEMSRIDN-------------------------EY------NASRGLGRD--------D-- 369 (513)
T ss_pred -----------------hhhhhhhhhh-------------------------hh------hhhhccccc--------c--
Confidence 0000000000 00 000000000 0
Q ss_pred ccCcccchhhhccccCCCccCCCCCceEEEecCCCCceeechhcHHHHHHhhCCCCCCCCcceeeEEEEeeecccHHHHH
Q 003879 511 LSSSYDESKSLQANFTGSTEIKDKDSYNFYQAIDGQHLILHPLNLKCLLHHYGSYDMLPHRISGRILQLESVTQSEAMRR 590 (789)
Q Consensus 511 ~sss~~~~~~~~~~~~~~~~~~~~~~YyFYQA~dGq~~yLhPLdiRiL~~~fGsy~~fP~tI~~rVeeie~~tvdEelRK 590 (789)
.......++|||||..|||||||||||||||+++| +|+.| +.|.++|++|++ |+|++|+
T Consensus 370 -----------------dl~~~~~~~y~fyq~~~~~~i~L~pldvk~L~~~~-~yd~f-~~i~~~i~~m~~--~~e~~rr 428 (513)
T KOG2164|consen 370 -----------------DLLSVSGDAYYFYQSVDGQHIYLHPLDVKILLACY-SYDLF-DEIEAQIENMEQ--VDEELRR 428 (513)
T ss_pred -----------------cccCccccceeeecccccceeeecccchhHhhhhh-hhhhH-HHHHHHHHHHHH--HhHHHHh
Confidence 00112347899999999999999999999999999 99999 999999999999 9999999
Q ss_pred hhccccccCCCceEEEEEecCCCCCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCC
Q 003879 591 RYRYLSHFSLTTTFQLCEIDLTEALPPDALSPFIDEIRKREKQRKQLANKERKEKMKAEAALVHSVPPVPSFGQSSYNDS 670 (789)
Q Consensus 591 R~KYLsHLPlgce~~f~E~Dl~~vVs~EtL~~F~~EL~kRrkrRk~K~r~Eek~r~raE~~~~~~~~~~~~~~~~~~~~~ 670 (789)
|||||+|||+| +++||||..+|++|+|..|+.||++|||+|++|++ ++-|.++|++.++. .+.+++...-..+
T Consensus 429 r~~~i~hlp~~---t~~~~d~~ki~p~~i~~~f~~ei~~r~k~r~~r~~--~~~~~~~~~~~~~~--l~~~~~~~~~~~d 501 (513)
T KOG2164|consen 429 RFKYIGHLPLG---TVLECDWQKILPKEILKLFKHEIKKRRKQRKRRDR--KRYRERAERQMGVL--LASEANLDLSSSD 501 (513)
T ss_pred hhhheeeccCc---eeEEeeccccCCHHHHHHhHHHHHHHHHHHHHHHH--HHHHHhhhhHHHHH--HHHhccCCCCCCC
Confidence 99999999999 89999999999999999999999999999999998 45556666666543 2234444322234
Q ss_pred CCCcCCcccccC
Q 003879 671 PTFSMDDFEALG 682 (789)
Q Consensus 671 ~~~~~~df~~L~ 682 (789)
.+|..++|++++
T Consensus 502 ~~~~~~~~ea~~ 513 (513)
T KOG2164|consen 502 EPFCGDEAEAPG 513 (513)
T ss_pred CccccchhhccC
Confidence 467777766553
No 2
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.21 E-value=1.8e-11 Score=123.38 Aligned_cols=71 Identities=28% Similarity=0.609 Sum_probs=56.5
Q ss_pred CCCCcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCC-------CCCCCcCCCCCccccccCCCceeEEeecc
Q 003879 210 SNPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDED-------YKGDCFKRCPLCFVMISSKELYTIHIENV 280 (789)
Q Consensus 210 ~~~e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~-------~k~~~~~~CPlCr~~i~~~~L~~v~~~~~ 280 (789)
...+.+.|+||++.+.+|++|.|||.||+.||..|+...... ...+....||+|+..+....|.+++....
T Consensus 14 ~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygrg~ 91 (193)
T PLN03208 14 DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGRGQ 91 (193)
T ss_pred cCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeeccCC
Confidence 344678999999999999999999999999999998743210 01123478999999999999999877654
No 3
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=9.3e-12 Score=127.42 Aligned_cols=63 Identities=32% Similarity=0.733 Sum_probs=56.6
Q ss_pred CcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCceeEEeeccc
Q 003879 213 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHIENVR 281 (789)
Q Consensus 213 e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~~~~~ 281 (789)
..+.|.|||+...+|++|.|||.|||+||.+|+.... ..+.||+|+..|..+.|.+||-...+
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~------~~~~cPVCK~~Vs~~~vvPlYGrG~~ 108 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRP------NSKECPVCKAEVSIDTVVPLYGRGSK 108 (230)
T ss_pred CceeeeeeccccCCCEEeecccceehHHHHHHHhhcC------CCeeCCccccccccceEEeeeccCCC
Confidence 4689999999999999999999999999999999765 35789999999999999998887654
No 4
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.99 E-value=3.6e-10 Score=87.65 Aligned_cols=42 Identities=36% Similarity=0.786 Sum_probs=32.4
Q ss_pred ccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCc
Q 003879 217 CPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 263 (789)
Q Consensus 217 CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlC 263 (789)
||||++++.+|+.+.|||+||..||.+|+..... ....||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~-----~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSG-----SGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSS-----ST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCC-----cCCCCcCC
Confidence 8999999999999999999999999999986431 12689988
No 5
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.6e-10 Score=119.99 Aligned_cols=54 Identities=35% Similarity=0.846 Sum_probs=47.1
Q ss_pred CCCcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCce
Q 003879 211 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 273 (789)
Q Consensus 211 ~~e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~ 273 (789)
.+....|.|||+...+|..|+|||+|||.||+.|.... ..||+||..+.+.++.
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek---------~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEK---------AECPLCREKFQPSKVI 289 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccc---------cCCCcccccCCCccee
Confidence 34468999999999999999999999999999999853 4599999999877754
No 6
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=2.2e-10 Score=112.89 Aligned_cols=55 Identities=38% Similarity=0.833 Sum_probs=47.6
Q ss_pred cccccccccCCC--CceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCceeEEe
Q 003879 214 SVQCPICLEYPL--CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHI 277 (789)
Q Consensus 214 ~~~CPICLe~~~--~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~ 277 (789)
-+.|||||+... -|+-|+|||+||..||...++. ..+||+|+..|..+.+..||+
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~---------~~~CP~C~kkIt~k~~~rI~L 187 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN---------TNKCPTCRKKITHKQFHRIYL 187 (187)
T ss_pred ccCCCceecchhhccccccccchhHHHHHHHHHHHh---------CCCCCCcccccchhhheeccC
Confidence 489999998765 4567999999999999999985 479999999999999888764
No 7
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.84 E-value=3.1e-09 Score=88.43 Aligned_cols=51 Identities=25% Similarity=0.364 Sum_probs=46.2
Q ss_pred ccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCcee
Q 003879 215 VQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 274 (789)
Q Consensus 215 ~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 274 (789)
+.||||.+.+.+|++++|||+||..||..|+.. ...||+|+..+...+|.+
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~---------~~~cP~~~~~~~~~~l~~ 52 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLS---------HGTDPVTGQPLTHEDLIP 52 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH---------CCCCCCCcCCCChhhcee
Confidence 679999999999999999999999999999985 258999999998888766
No 8
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.77 E-value=4.7e-09 Score=79.88 Aligned_cols=38 Identities=50% Similarity=1.167 Sum_probs=32.9
Q ss_pred ccccccCCCCc-eecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCc
Q 003879 217 CPICLEYPLCP-QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 263 (789)
Q Consensus 217 CPICLe~~~~P-vit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlC 263 (789)
||||++.+.+| ++++|||+||..||.+|+.. ..+||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~---------~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK---------NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC---------TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC---------cCCCcCC
Confidence 89999999999 58999999999999999985 2689988
No 9
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=3.1e-09 Score=110.74 Aligned_cols=54 Identities=35% Similarity=0.861 Sum_probs=45.9
Q ss_pred CCCcccccccccCCCCceecCCCCeecHHHHHH-HHHcCCCCCCCCCcCCCCCccccccCCCc
Q 003879 211 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQ-YLLMGDEDYKGDCFKRCPLCFVMISSKEL 272 (789)
Q Consensus 211 ~~e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~-~l~~~~~~~k~~~~~~CPlCr~~i~~~~L 272 (789)
...++.|+||++.+..|.++.|||+|||.||+. |-.. +.-.||+||..+..+++
T Consensus 212 p~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~--------k~~~CplCRak~~pk~v 266 (271)
T COG5574 212 PLADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKK--------KYEFCPLCRAKVYPKKV 266 (271)
T ss_pred cccccceeeeecccCCcccccccchhhHHHHHHHHHhh--------ccccCchhhhhccchhh
Confidence 356899999999999999999999999999999 5543 34569999998877665
No 10
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.62 E-value=3e-08 Score=75.87 Aligned_cols=40 Identities=45% Similarity=1.016 Sum_probs=36.2
Q ss_pred ccccccCCCCce-ecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCc
Q 003879 217 CPICLEYPLCPQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 263 (789)
Q Consensus 217 CPICLe~~~~Pv-it~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlC 263 (789)
|+||++.+..++ +++|||.||..||..|+... ....||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~-------~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENS-------GSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHT-------SSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhc-------CCccCCcC
Confidence 899999999999 99999999999999999962 35789998
No 11
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.61 E-value=2.8e-08 Score=79.66 Aligned_cols=46 Identities=39% Similarity=0.895 Sum_probs=39.8
Q ss_pred cccccccccCCCCceecCCCCe-ecHHHHHHHHHcCCCCCCCCCcCCCCCcccccc
Q 003879 214 SVQCPICLEYPLCPQITSCGHI-FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 268 (789)
Q Consensus 214 ~~~CPICLe~~~~Pvit~CGHi-FC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~ 268 (789)
+..|+||++.+..+++++|||. ||..|+.+|+.. ..+||+||..|.
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~---------~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKR---------KKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT---------TSBBTTTTBB-S
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhccc---------CCCCCcCChhhc
Confidence 5689999999999999999999 999999999983 478999999774
No 12
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=1.1e-08 Score=119.87 Aligned_cols=57 Identities=26% Similarity=0.631 Sum_probs=52.0
Q ss_pred CcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCceeEEe
Q 003879 213 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHI 277 (789)
Q Consensus 213 e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~ 277 (789)
.-+.||+|-.-+.+.+++.|||+||..||...+.. +.++||.|...|..+|+.+|++
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~et--------RqRKCP~Cn~aFganDv~~I~l 698 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYET--------RQRKCPKCNAAFGANDVHRIHL 698 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHH--------hcCCCCCCCCCCCcccccccCC
Confidence 35789999999999999999999999999999987 4589999999999999998764
No 13
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.59 E-value=3.3e-08 Score=110.49 Aligned_cols=54 Identities=35% Similarity=0.717 Sum_probs=46.1
Q ss_pred CCcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCcee
Q 003879 212 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 274 (789)
Q Consensus 212 ~e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 274 (789)
...+.|+||++.+.+|++++|||.||..||..|+.. ...||+|+..+....|..
T Consensus 24 e~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~---------~~~CP~Cr~~~~~~~Lr~ 77 (397)
T TIGR00599 24 DTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN---------QPKCPLCRAEDQESKLRS 77 (397)
T ss_pred ccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC---------CCCCCCCCCccccccCcc
Confidence 356899999999999999999999999999999974 257999999876655543
No 14
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.58 E-value=2.5e-08 Score=77.73 Aligned_cols=40 Identities=40% Similarity=0.847 Sum_probs=33.1
Q ss_pred cccccccCCC---CceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCcc
Q 003879 216 QCPICLEYPL---CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCF 264 (789)
Q Consensus 216 ~CPICLe~~~---~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr 264 (789)
.|+||++.+. ..+.++|||+||..||..|+.. ...||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~---------~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR---------NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH---------SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh---------CCcCCccC
Confidence 6999998763 4557899999999999999986 25899996
No 15
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.57 E-value=4.4e-08 Score=84.85 Aligned_cols=55 Identities=25% Similarity=0.282 Sum_probs=45.1
Q ss_pred CCcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCcee
Q 003879 212 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 274 (789)
Q Consensus 212 ~e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 274 (789)
++.+.||||.+.+.+|++++|||+||..||..|+.. ....||+|+..+...+|.+
T Consensus 2 P~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~--------~~~~~P~t~~~l~~~~l~p 56 (73)
T PF04564_consen 2 PDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQ--------NGGTDPFTRQPLSESDLIP 56 (73)
T ss_dssp SGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCT--------TSSB-TTT-SB-SGGGSEE
T ss_pred CcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHc--------CCCCCCCCCCcCCcccceE
Confidence 467899999999999999999999999999999986 2478999999999888876
No 16
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.57 E-value=3.8e-08 Score=103.19 Aligned_cols=47 Identities=28% Similarity=0.692 Sum_probs=38.7
Q ss_pred CcccccccccCCCC--------ceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCcccccc
Q 003879 213 LSVQCPICLEYPLC--------PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 268 (789)
Q Consensus 213 e~~~CPICLe~~~~--------Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~ 268 (789)
.+..|+||++.+.. ++++.|||+||..||..|+.. ...||+||..+.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~---------~~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE---------KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc---------CCCCCCCCCEee
Confidence 46799999997654 356799999999999999974 368999998664
No 17
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.53 E-value=1.6e-08 Score=107.86 Aligned_cols=56 Identities=38% Similarity=0.803 Sum_probs=50.1
Q ss_pred CcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCceeEEe
Q 003879 213 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHI 277 (789)
Q Consensus 213 e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~ 277 (789)
+-+.|-||.++|..|++|+|||.||.-||..|+.. ...||.|...+...+|+.-.+
T Consensus 22 ~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~---------~p~CP~C~~~~~Es~Lr~n~i 77 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY---------KPQCPTCCVTVTESDLRNNRI 77 (442)
T ss_pred HHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc---------CCCCCceecccchhhhhhhhH
Confidence 45899999999999999999999999999999985 368999999999999986433
No 18
>PHA02926 zinc finger-like protein; Provisional
Probab=98.47 E-value=9.2e-08 Score=97.81 Aligned_cols=54 Identities=30% Similarity=0.668 Sum_probs=40.7
Q ss_pred CCcccccccccCCCC---------ceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCcccccc
Q 003879 212 PLSVQCPICLEYPLC---------PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 268 (789)
Q Consensus 212 ~e~~~CPICLe~~~~---------Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~ 268 (789)
.++..|+||++.... +++.+|+|.||+.||..|.....+. .....||+||..+.
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~---~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRET---GASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhcccc---CcCCcCCCCcceee
Confidence 457899999987532 3467999999999999999863311 12468999998654
No 19
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.41 E-value=1.7e-07 Score=73.12 Aligned_cols=39 Identities=38% Similarity=0.921 Sum_probs=23.9
Q ss_pred ccccccCCCC----ceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCC
Q 003879 217 CPICLEYPLC----PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCP 261 (789)
Q Consensus 217 CPICLe~~~~----Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CP 261 (789)
||||.+ +.. |++++|||+||..||.+++..... ...+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~-----~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDR-----NRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S------S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCC-----CeeeCc
Confidence 999999 777 999999999999999999986431 247887
No 20
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.36 E-value=3.2e-07 Score=69.91 Aligned_cols=43 Identities=47% Similarity=1.037 Sum_probs=35.8
Q ss_pred cccccccCCCCceec-CCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCcccc
Q 003879 216 QCPICLEYPLCPQIT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVM 266 (789)
Q Consensus 216 ~CPICLe~~~~Pvit-~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~ 266 (789)
.|+||++.+..++.+ +|||.||..|+..|+... ...||+|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~--------~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSG--------KNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhC--------cCCCCCCCCc
Confidence 499999998777755 599999999999999851 3689999874
No 21
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.36 E-value=1.3e-07 Score=99.26 Aligned_cols=53 Identities=32% Similarity=0.526 Sum_probs=47.0
Q ss_pred CcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCcee
Q 003879 213 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 274 (789)
Q Consensus 213 e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 274 (789)
.-+.|-||-+.+..|..|+|||.||.-||.+|+.. ...||+||.......|+.
T Consensus 24 s~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~---------qp~CP~Cr~~~~esrlr~ 76 (391)
T COG5432 24 SMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT---------QPFCPVCREDPCESRLRG 76 (391)
T ss_pred hHHHhhhhhheeecceecccccchhHHHHHHHhcC---------CCCCccccccHHhhhccc
Confidence 35789999999999999999999999999999985 468999999887777664
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.29 E-value=5.9e-07 Score=66.07 Aligned_cols=39 Identities=46% Similarity=1.090 Sum_probs=34.6
Q ss_pred ccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCc
Q 003879 217 CPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 263 (789)
Q Consensus 217 CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlC 263 (789)
|+||++....+++++|||.||..|+..|+.. ....||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~--------~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKS--------GNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHh--------CcCCCCCC
Confidence 8999999889999999999999999999983 23679987
No 23
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.26 E-value=5.5e-07 Score=70.43 Aligned_cols=41 Identities=41% Similarity=0.919 Sum_probs=34.3
Q ss_pred cccccccCC---CCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccc
Q 003879 216 QCPICLEYP---LCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFV 265 (789)
Q Consensus 216 ~CPICLe~~---~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~ 265 (789)
.|+||++.+ ..+++++|||+||..|+..+.. ....||+|+.
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~---------~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKG---------KSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcC---------CCCCCcCCCC
Confidence 499999877 3577999999999999999871 3579999974
No 24
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.25 E-value=6.5e-07 Score=96.70 Aligned_cols=59 Identities=24% Similarity=0.542 Sum_probs=45.8
Q ss_pred CcccccccccC-CCCce---ec-CCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCceeEEeec
Q 003879 213 LSVQCPICLEY-PLCPQ---IT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHIEN 279 (789)
Q Consensus 213 e~~~CPICLe~-~~~Pv---it-~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~~~ 279 (789)
++..||||... ...|. ++ .|||.||..||..++..+ ...||.|+..+..+.+++..+..
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~--------~~~CP~C~~~lrk~~fr~q~F~D 65 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG--------SGSCPECDTPLRKNNFRVQLFED 65 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCC--------CCCCCCCCCccchhhcccccccc
Confidence 35689999963 55554 33 699999999999988642 35899999999999988765543
No 25
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.14 E-value=2.3e-06 Score=74.31 Aligned_cols=41 Identities=49% Similarity=0.997 Sum_probs=31.7
Q ss_pred ccccccccCCC------------Cce-ecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCcc
Q 003879 215 VQCPICLEYPL------------CPQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCF 264 (789)
Q Consensus 215 ~~CPICLe~~~------------~Pv-it~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr 264 (789)
-.|.||++.+. .++ ...|||.|+..||.+|+.. ...||+||
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~---------~~~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ---------NNTCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT---------SSB-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc---------CCcCCCCC
Confidence 34999998872 222 4589999999999999985 35899997
No 26
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=1.6e-06 Score=90.52 Aligned_cols=45 Identities=40% Similarity=0.902 Sum_probs=40.0
Q ss_pred CCcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccc
Q 003879 212 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFV 265 (789)
Q Consensus 212 ~e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~ 265 (789)
.+.+.||||++.+..|++++|||.||..||..++. . ...||.|+.
T Consensus 11 ~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~--------~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-G--------PLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcCccccccchHhHHHHHHhcC-C--------CcCCcccCC
Confidence 35789999999999999999999999999999887 1 378999994
No 27
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.97 E-value=1.6e-06 Score=72.74 Aligned_cols=49 Identities=29% Similarity=0.762 Sum_probs=26.3
Q ss_pred cccccccccCCCCce-ecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCce
Q 003879 214 SVQCPICLEYPLCPQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 273 (789)
Q Consensus 214 ~~~CPICLe~~~~Pv-it~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~ 273 (789)
-+.|++|.+.+..|+ +..|.|+||..||...+. ..||+|..+.-.+|++
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~-----------~~CPvC~~Paw~qD~~ 56 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG-----------SECPVCHTPAWIQDIQ 56 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTT-----------TB-SSS--B-S-SS--
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC-----------CCCCCcCChHHHHHHH
Confidence 478999999999998 579999999999976443 4599999987766664
No 28
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=4.6e-06 Score=90.48 Aligned_cols=62 Identities=24% Similarity=0.522 Sum_probs=45.4
Q ss_pred CcCccCCccceeeeecCCCCcccccccccCC-CC------------ceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCC
Q 003879 194 DPDKMLQWEDIICVRYSNPLSVQCPICLEYP-LC------------PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRC 260 (789)
Q Consensus 194 dpd~~l~w~~v~qv~~~~~e~~~CPICLe~~-~~------------Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~C 260 (789)
|.|.++.--.+.|+ ...+..|-||++.+ .. |..++|||+|.+.|+..|++. ...|
T Consensus 270 dl~~~~~t~t~eql---~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER---------qQTC 337 (491)
T COG5243 270 DLNAMYPTATEEQL---TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER---------QQTC 337 (491)
T ss_pred HHHhhcchhhhhhh---cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh---------ccCC
Confidence 34444443333443 44678999999873 32 467899999999999999995 4689
Q ss_pred CCccccc
Q 003879 261 PLCFVMI 267 (789)
Q Consensus 261 PlCr~~i 267 (789)
|+||.++
T Consensus 338 PICr~p~ 344 (491)
T COG5243 338 PICRRPV 344 (491)
T ss_pred CcccCcc
Confidence 9999974
No 29
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=1.4e-06 Score=94.30 Aligned_cols=47 Identities=40% Similarity=0.835 Sum_probs=41.1
Q ss_pred CcccccccccCCCCceec-CCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 003879 213 LSVQCPICLEYPLCPQIT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 267 (789)
Q Consensus 213 e~~~CPICLe~~~~Pvit-~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i 267 (789)
.++.|||||+.+...+++ .|+|.||..||..-+..+ ...||.||..+
T Consensus 42 ~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~g--------n~ecptcRk~l 89 (381)
T KOG0311|consen 42 IQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSG--------NNECPTCRKKL 89 (381)
T ss_pred hhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhc--------CCCCchHHhhc
Confidence 468999999999988876 699999999999998863 48999999865
No 30
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=1.5e-05 Score=83.94 Aligned_cols=49 Identities=37% Similarity=0.879 Sum_probs=41.4
Q ss_pred CcccccccccCCCCceec-CCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCcccccc
Q 003879 213 LSVQCPICLEYPLCPQIT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 268 (789)
Q Consensus 213 e~~~CPICLe~~~~Pvit-~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~ 268 (789)
...+||+|-+.|+.|.+. +|||+||+.||..-.... ..+.||.|...+.
T Consensus 238 ~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~-------asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWD-------ASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCCCCeeeccccceeehhhhhhhhcch-------hhcccCccCCCCc
Confidence 468999999999999955 699999999999877653 3589999998765
No 31
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=9.1e-06 Score=65.70 Aligned_cols=46 Identities=33% Similarity=0.809 Sum_probs=40.3
Q ss_pred ccccccccCCCCceecCCCCe-ecHHHHHHHHHcCCCCCCCCCcCCCCCcccccc
Q 003879 215 VQCPICLEYPLCPQITSCGHI-FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 268 (789)
Q Consensus 215 ~~CPICLe~~~~Pvit~CGHi-FC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~ 268 (789)
.+|-||++-+++.++..|||. +|+.|-++.++.. ...||+||.+|+
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~--------~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKAL--------HGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHcc--------CCcCcchhhHHH
Confidence 679999999999999999995 7999999988752 368999999874
No 32
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=2e-05 Score=92.61 Aligned_cols=51 Identities=31% Similarity=0.636 Sum_probs=43.1
Q ss_pred CcccccccccCCCC-----ceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCc
Q 003879 213 LSVQCPICLEYPLC-----PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKEL 272 (789)
Q Consensus 213 e~~~CPICLe~~~~-----Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L 272 (789)
....|+||++.+.. |..++|||+||..|+..|++. ...||+||..+.....
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er---------~qtCP~CR~~~~~~~~ 345 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER---------QQTCPTCRTVLYDYVL 345 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHH---------hCcCCcchhhhhcccc
Confidence 36789999999887 789999999999999999996 3689999995544443
No 33
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.59 E-value=6.1e-05 Score=66.99 Aligned_cols=34 Identities=29% Similarity=0.649 Sum_probs=28.0
Q ss_pred ecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCcccccc
Q 003879 229 ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 268 (789)
Q Consensus 229 it~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~ 268 (789)
.-.|+|.|...||++|+.... ....||+||....
T Consensus 49 ~g~C~H~FH~hCI~kWl~~~~------~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 49 WGKCSHNFHMHCILKWLSTQS------SKGQCPMCRQPWK 82 (85)
T ss_pred eccCccHHHHHHHHHHHcccc------CCCCCCCcCCeee
Confidence 447999999999999999753 2368999998654
No 34
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=4.5e-05 Score=81.17 Aligned_cols=48 Identities=29% Similarity=0.716 Sum_probs=39.8
Q ss_pred CcccccccccCCCC---ceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCcccccc
Q 003879 213 LSVQCPICLEYPLC---PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 268 (789)
Q Consensus 213 e~~~CPICLe~~~~---Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~ 268 (789)
....|.||++.++. -+.++|.|.|...|+..|+.. ...+||.||..+.
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~--------y~~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLG--------YSNKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhh--------hcccCCccCCCCC
Confidence 46899999988753 237899999999999999984 3478999999875
No 35
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=4.2e-05 Score=81.60 Aligned_cols=52 Identities=31% Similarity=0.528 Sum_probs=43.7
Q ss_pred CcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCc
Q 003879 213 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKEL 272 (789)
Q Consensus 213 e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L 272 (789)
..-.|+||+..+..|+.+.|+|.||+-||.--... ..+.|++||.+|...-+
T Consensus 6 ~~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~n--------dk~~CavCR~pids~i~ 57 (324)
T KOG0824|consen 6 KKKECLICYNTGNCPVNLYCFHKFCYICIKGSYKN--------DKKTCAVCRFPIDSTID 57 (324)
T ss_pred cCCcceeeeccCCcCccccccchhhhhhhcchhhc--------CCCCCceecCCCCcchh
Confidence 35689999999999999999999999999876654 23679999999876544
No 36
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.46 E-value=6.7e-05 Score=62.18 Aligned_cols=43 Identities=42% Similarity=0.732 Sum_probs=30.4
Q ss_pred CcccccccccCCCCcee-cCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCC
Q 003879 213 LSVQCPICLEYPLCPQI-TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPL 262 (789)
Q Consensus 213 e~~~CPICLe~~~~Pvi-t~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPl 262 (789)
..+.|||.+..+.+|+. ..|||+|....|+.|+... ....||.
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~-------~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRN-------GSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTT-------S-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhc-------CCCCCCC
Confidence 36899999999999996 5999999999999999421 3588998
No 37
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=6.6e-05 Score=82.63 Aligned_cols=45 Identities=36% Similarity=0.607 Sum_probs=36.7
Q ss_pred ccccccccCCCC---ceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 003879 215 VQCPICLEYPLC---PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 267 (789)
Q Consensus 215 ~~CPICLe~~~~---Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i 267 (789)
..|.||||.+.. -++++|+|.|...||-.|+.. +-..||+|+..+
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~--------~r~~CPvCK~di 277 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQ--------TRTFCPVCKRDI 277 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhh--------cCccCCCCCCcC
Confidence 389999998753 348999999999999999985 224599998744
No 38
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.36 E-value=4.7e-05 Score=82.30 Aligned_cols=48 Identities=38% Similarity=0.838 Sum_probs=41.3
Q ss_pred cccccccccCCCCce-ecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCC
Q 003879 214 SVQCPICLEYPLCPQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSK 270 (789)
Q Consensus 214 ~~~CPICLe~~~~Pv-it~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~ 270 (789)
..+|.+|-.+++++. ++.|-|.||..||+.|+.. ...||.|...|...
T Consensus 15 ~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~---------~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE---------SKYCPTCDIVIHKT 63 (331)
T ss_pred ceehhhccceeecchhHHHHHHHHHHHHHHHHHHH---------hccCCccceeccCc
Confidence 578999999999887 6789999999999999996 47899997766543
No 39
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=9.4e-05 Score=83.20 Aligned_cols=49 Identities=31% Similarity=0.688 Sum_probs=43.1
Q ss_pred CCcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccC
Q 003879 212 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 269 (789)
Q Consensus 212 ~e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~ 269 (789)
..++.|.||...+..|+.++|||.||..||.+.+.. ...||+|+..+..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~---------~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ---------ETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccccHHHHHHHhcc---------CCCCccccccccc
Confidence 458999999999999999999999999999996652 4789999998764
No 40
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.12 E-value=0.00013 Score=77.31 Aligned_cols=79 Identities=30% Similarity=0.560 Sum_probs=56.0
Q ss_pred cccceeeeCCCCCCCCCCCCcCccCCccceee--------------eecCCCCcccccccccCCCCceec-CCCCeecHH
Q 003879 175 QANYKFVVLDTGDHAPESMDPDKMLQWEDIIC--------------VRYSNPLSVQCPICLEYPLCPQIT-SCGHIFCFP 239 (789)
Q Consensus 175 ~an~rFvV~~~~dy~~~~~dpd~~l~w~~v~q--------------v~~~~~e~~~CPICLe~~~~Pvit-~CGHiFC~~ 239 (789)
-+|...++.+.+.|..+.-| +. .|++--+ ..... -.+.||.|...+..|+.| .|||.||..
T Consensus 225 ~~~a~imit~EG~yVv~qpd--vq-sWe~Yq~r~~a~~~~~Dqv~k~~~~~-i~LkCplc~~Llrnp~kT~cC~~~fc~e 300 (427)
T COG5222 225 PSNAAIMITPEGGYVVAQPD--VQ-SWEKYQQRTKAVAEIPDQVYKMQPPN-ISLKCPLCHCLLRNPMKTPCCGHTFCDE 300 (427)
T ss_pred ccccceEEcCCCCeEEeccc--hH-HHHHHHHHHHhhhhCchhhhccCCCC-ccccCcchhhhhhCcccCccccchHHHH
Confidence 45677888889999866444 22 3543211 11111 138999999999999988 689999999
Q ss_pred HHHHHHHcCCCCCCCCCcCCCCCccc
Q 003879 240 CILQYLLMGDEDYKGDCFKRCPLCFV 265 (789)
Q Consensus 240 CIl~~l~~~~~~~k~~~~~~CPlCr~ 265 (789)
||...|... .++||.|..
T Consensus 301 ci~~al~ds--------Df~CpnC~r 318 (427)
T COG5222 301 CIGTALLDS--------DFKCPNCSR 318 (427)
T ss_pred HHhhhhhhc--------cccCCCccc
Confidence 999877753 489999944
No 41
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.09 E-value=0.00017 Score=72.66 Aligned_cols=45 Identities=29% Similarity=0.615 Sum_probs=38.7
Q ss_pred cccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 003879 214 SVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 267 (789)
Q Consensus 214 ~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i 267 (789)
.+.|-||-..+..|++|.|||.||..|.++-+.- ...|-+|....
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k---------g~~C~~Cgk~t 240 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQK---------GDECGVCGKAT 240 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhcc---------CCcceecchhh
Confidence 4789999999999999999999999998876652 46899997754
No 42
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.00 E-value=0.00038 Score=76.46 Aligned_cols=51 Identities=29% Similarity=0.668 Sum_probs=43.6
Q ss_pred cccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCC
Q 003879 214 SVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKE 271 (789)
Q Consensus 214 ~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~ 271 (789)
..-|-||-+--.+-.+-+|||..|-.|+-.|....+ ...||.||..|...+
T Consensus 369 FeLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~-------gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 369 FELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDE-------GQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHHHhhccCCCcccccccchHHHHHHHhhcccCC-------CCCCCceeeEecccc
Confidence 356999999988888999999999999999987643 478999999887655
No 43
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.00026 Score=75.52 Aligned_cols=45 Identities=33% Similarity=0.730 Sum_probs=39.2
Q ss_pred cccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 003879 214 SVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 267 (789)
Q Consensus 214 ~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i 267 (789)
.+.|-||..++..||+|.|||.||..|-+..+.. ..+|++|...+
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk---------~~~c~vC~~~t 285 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK---------GEKCYVCSQQT 285 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhcccccc---------CCcceeccccc
Confidence 4679999999999999999999999998887653 46899997754
No 44
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.00042 Score=75.13 Aligned_cols=51 Identities=31% Similarity=0.720 Sum_probs=44.2
Q ss_pred CCCCcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccC
Q 003879 210 SNPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 269 (789)
Q Consensus 210 ~~~e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~ 269 (789)
+..++..||||..-+...++++|||.-|+.||.+++.. .+.|-.|...+..
T Consensus 418 p~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN---------~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 418 PDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN---------CKRCFFCKTTVID 468 (489)
T ss_pred CCcccccCcceecccchhhccCCCCchHHHHHHHHHhc---------CCeeeEecceeee
Confidence 44578899999999999999999999999999999985 4689999876653
No 45
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.73 E-value=0.0006 Score=77.19 Aligned_cols=54 Identities=30% Similarity=0.531 Sum_probs=44.4
Q ss_pred CCcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccC
Q 003879 212 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 269 (789)
Q Consensus 212 ~e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~ 269 (789)
.....|-+|.++..+++.+.|.|.||.-||..|+..-.+. ....||.|...+.-
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~----~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMEN----NNVTCPVCHIGLSI 587 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcc----cCCCCccccccccc
Confidence 3568899999999999999999999999999998753321 24799999887653
No 46
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.0017 Score=71.33 Aligned_cols=46 Identities=26% Similarity=0.626 Sum_probs=38.8
Q ss_pred cccccccccCCCCceecCCCCe-ecHHHHHHHHHcCCCCCCCCCcCCCCCcccccc
Q 003879 214 SVQCPICLEYPLCPQITSCGHI-FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 268 (789)
Q Consensus 214 ~~~CPICLe~~~~Pvit~CGHi-FC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~ 268 (789)
...|-||+..+.+-++++|.|. .|..|-..+.-. ..+||+||.+|.
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q---------~n~CPICRqpi~ 336 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQ---------TNNCPICRQPIE 336 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHHHh---------hcCCCccccchH
Confidence 5789999999999999999995 799997765532 368999999874
No 47
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.45 E-value=0.0013 Score=74.62 Aligned_cols=53 Identities=34% Similarity=0.776 Sum_probs=44.9
Q ss_pred CCcccccccccCCCCcee-cCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCce
Q 003879 212 PLSVQCPICLEYPLCPQI-TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 273 (789)
Q Consensus 212 ~e~~~CPICLe~~~~Pvi-t~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~ 273 (789)
.+.+.||||...+..|+. +.|||.||..|+..|+.. ...||.|+..+......
T Consensus 19 ~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~---------~~~cp~~~~~~~~~~~~ 72 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN---------HQKCPVCRQELTQAEEL 72 (391)
T ss_pred cccccCccccccccCCCCCCCCCCcccccccchhhcc---------CcCCcccccccchhhcc
Confidence 457999999999999998 599999999999999985 36899998777655544
No 48
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.0013 Score=74.11 Aligned_cols=48 Identities=29% Similarity=0.571 Sum_probs=36.7
Q ss_pred CcccccccccCCC----------C-------ceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCcccccc
Q 003879 213 LSVQCPICLEYPL----------C-------PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 268 (789)
Q Consensus 213 e~~~CPICLe~~~----------~-------Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~ 268 (789)
...-|+||+.... + -+.|+|.|+|...|+++|+..- ...||.||.++.
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~y--------kl~CPvCR~pLP 634 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTY--------KLICPVCRCPLP 634 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhh--------cccCCccCCCCC
Confidence 3567999997531 1 2357999999999999999852 258999999874
No 49
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.40 E-value=0.0026 Score=66.34 Aligned_cols=54 Identities=11% Similarity=0.231 Sum_probs=45.4
Q ss_pred CcccccccccCCCCc----eecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCceeE
Q 003879 213 LSVQCPICLEYPLCP----QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTI 275 (789)
Q Consensus 213 e~~~CPICLe~~~~P----vit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v 275 (789)
..+.||||.+.+.+. ++-+|||+||+.|+.+++.. ...||+|..++..+++..+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~---------D~v~pv~d~plkdrdiI~L 277 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK---------DMVDPVTDKPLKDRDIIGL 277 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc---------cccccCCCCcCcccceEee
Confidence 578999999988754 36699999999999999873 4789999999988887653
No 50
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.36 E-value=0.0039 Score=66.87 Aligned_cols=53 Identities=17% Similarity=0.376 Sum_probs=40.2
Q ss_pred CCcccccccccCCCCc----eecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCcee
Q 003879 212 PLSVQCPICLEYPLCP----QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 274 (789)
Q Consensus 212 ~e~~~CPICLe~~~~P----vit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 274 (789)
...+.|||+...+..- .+.+|||+||..||...- . ...||+|..++...|+..
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k---~-------~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK---K-------SKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc---c-------cccccccCCccccCCEEE
Confidence 4568999999887432 256999999999998873 1 256999999887666543
No 51
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.35 E-value=0.00088 Score=80.38 Aligned_cols=52 Identities=33% Similarity=0.699 Sum_probs=45.9
Q ss_pred ccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCcee
Q 003879 215 VQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 274 (789)
Q Consensus 215 ~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 274 (789)
..|+||++ +..++++.|||.||..|+...+.... ...||+|+..+..+.+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~-------~~~~~~cr~~l~~~~l~s 506 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSE-------NAPCPLCRNVLKEKKLLS 506 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhcccccc-------CCCCcHHHHHHHHHHHhh
Confidence 89999999 88889999999999999999998754 248999999988877765
No 52
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.0022 Score=70.59 Aligned_cols=52 Identities=27% Similarity=0.728 Sum_probs=37.0
Q ss_pred ccccccccCCCCc----eecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCc
Q 003879 215 VQCPICLEYPLCP----QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKEL 272 (789)
Q Consensus 215 ~~CPICLe~~~~P----vit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L 272 (789)
..|.||.+..-.- -+-.|||+|...|+..|+.... ..+.||+|+-.+....+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~P------s~R~cpic~ik~~~r~~ 60 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDP------SNRGCPICQIKLQERHV 60 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCC------ccCCCCceeecccceee
Confidence 5799996543211 1446999999999999999754 23799999855544443
No 53
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.0018 Score=70.19 Aligned_cols=54 Identities=31% Similarity=0.789 Sum_probs=42.7
Q ss_pred CCCcccccccccCCCCcee-cCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCce
Q 003879 211 NPLSVQCPICLEYPLCPQI-TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 273 (789)
Q Consensus 211 ~~e~~~CPICLe~~~~Pvi-t~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~ 273 (789)
..+...||||+-.-.+|.. ..-|-+||++||.+|+.. ...||+-..+....++.
T Consensus 297 ~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~---------~~~CPVT~~p~~v~~l~ 351 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN---------YGHCPVTGYPASVDHLI 351 (357)
T ss_pred CCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh---------cCCCCccCCcchHHHHH
Confidence 4556889999988888774 567999999999999984 57899987766555443
No 54
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.0027 Score=69.82 Aligned_cols=44 Identities=32% Similarity=0.806 Sum_probs=37.0
Q ss_pred CcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCcccccc
Q 003879 213 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 268 (789)
Q Consensus 213 e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~ 268 (789)
...-|-||++.+...+..+|||..| |..-..+. ..||+||..|.
T Consensus 304 ~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~l----------~~CPvCR~rI~ 347 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKHL----------PQCPVCRQRIR 347 (355)
T ss_pred CCCceEEecCCccceeeecCCcEEE--chHHHhhC----------CCCchhHHHHH
Confidence 3578999999999999999999987 87776653 56999998774
No 55
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.003 Score=70.04 Aligned_cols=54 Identities=28% Similarity=0.597 Sum_probs=39.7
Q ss_pred CCcccccccccCCCCce-----e---cCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 003879 212 PLSVQCPICLEYPLCPQ-----I---TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 267 (789)
Q Consensus 212 ~e~~~CPICLe~~~~Pv-----i---t~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i 267 (789)
..+..|-||++...+.. . .+|-|.||..||..|-....... +..+.||.||...
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~--~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFES--KTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhcccc--ccccCCCcccCcc
Confidence 45788999999765544 3 57999999999999986533111 1258999998754
No 56
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.0014 Score=72.56 Aligned_cols=54 Identities=30% Similarity=0.662 Sum_probs=41.7
Q ss_pred cccccccccCCCCce-----ecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCcee
Q 003879 214 SVQCPICLEYPLCPQ-----ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 274 (789)
Q Consensus 214 ~~~CPICLe~~~~Pv-----it~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 274 (789)
..+|||||+..+-|. .+.|||.|-..||.+|+. .. ....||.|...-.++.|++
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~-k~------~~~~cp~c~~katkr~i~~ 62 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLG-KK------TKMQCPLCSGKATKRQIRP 62 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHh-hh------hhhhCcccCChhHHHHHHH
Confidence 578999998765443 578999999999999995 11 3478999988766666654
No 57
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.0019 Score=68.91 Aligned_cols=41 Identities=32% Similarity=0.780 Sum_probs=34.6
Q ss_pred cccccccccCCCCceecCCCC-eecHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 003879 214 SVQCPICLEYPLCPQITSCGH-IFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 267 (789)
Q Consensus 214 ~~~CPICLe~~~~Pvit~CGH-iFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i 267 (789)
..-|.||++.|.+-+.+.||| +-|..|-. ....||+||..|
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGk-------------rm~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGK-------------RMNECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhcc-------------ccccCchHHHHH
Confidence 577999999999999999999 46998833 346899999865
No 58
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.03 E-value=0.0014 Score=77.18 Aligned_cols=51 Identities=22% Similarity=0.390 Sum_probs=39.9
Q ss_pred CcccccccccCCCCce---ecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCc
Q 003879 213 LSVQCPICLEYPLCPQ---ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKEL 272 (789)
Q Consensus 213 e~~~CPICLe~~~~Pv---it~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L 272 (789)
....||+|+..+.+.. -.+|+|+||..||..|... ...||+||..+..-.+
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~---------aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC---------AQTCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh---------cccCchhhhhhheeee
Confidence 4578999997665443 3579999999999999885 3689999998865443
No 59
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.81 E-value=0.0031 Score=70.76 Aligned_cols=45 Identities=29% Similarity=0.670 Sum_probs=36.3
Q ss_pred CcccccccccCCCCce----ecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCcccccc
Q 003879 213 LSVQCPICLEYPLCPQ----ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 268 (789)
Q Consensus 213 e~~~CPICLe~~~~Pv----it~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~ 268 (789)
+-.+|||||+.+..-+ .+.|.|.|...|+..|.. ..||+||-...
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~-----------~scpvcR~~q~ 222 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD-----------SSCPVCRYCQS 222 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhccc-----------CcChhhhhhcC
Confidence 4579999998775443 468999999999999975 57999987655
No 60
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.63 E-value=0.0037 Score=74.94 Aligned_cols=48 Identities=23% Similarity=0.545 Sum_probs=38.4
Q ss_pred CcccccccccCCC-------CceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 003879 213 LSVQCPICLEYPL-------CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 267 (789)
Q Consensus 213 e~~~CPICLe~~~-------~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i 267 (789)
...+|+||...+. .-+...|.|.|.-.|+..|+.... ...||+||..|
T Consensus 1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~-------~s~CPlCRsei 1522 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSA-------RSNCPLCRSEI 1522 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcC-------CCCCCcccccc
Confidence 3568999998643 234668999999999999999754 47999999765
No 61
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=95.27 E-value=0.0051 Score=53.08 Aligned_cols=55 Identities=33% Similarity=0.762 Sum_probs=25.5
Q ss_pred cccccccccCCC-C---cee----cCCCCeecHHHHHHHHHcCCCCCC--CCCcCCCCCcccccc
Q 003879 214 SVQCPICLEYPL-C---PQI----TSCGHIFCFPCILQYLLMGDEDYK--GDCFKRCPLCFVMIS 268 (789)
Q Consensus 214 ~~~CPICLe~~~-~---Pvi----t~CGHiFC~~CIl~~l~~~~~~~k--~~~~~~CPlCr~~i~ 268 (789)
+..|+||..... . |.. ..|+++|...||..|+........ ......||.|+..|.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 467999998644 2 332 379999999999999986432111 111246999998764
No 62
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.49 E-value=0.0078 Score=63.14 Aligned_cols=43 Identities=40% Similarity=0.968 Sum_probs=29.8
Q ss_pred ccccccccCC-CCce-ecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCcccccc
Q 003879 215 VQCPICLEYP-LCPQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 268 (789)
Q Consensus 215 ~~CPICLe~~-~~Pv-it~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~ 268 (789)
..|--|.--+ ..+. +|.|+|+||..|...- ....||+|+..++
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~-----------~~~~C~lCkk~ir 48 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKAS-----------SPDVCPLCKKSIR 48 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccC-----------Cccccccccceee
Confidence 3588787543 3343 8999999999995431 1238999998654
No 63
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=0.018 Score=62.02 Aligned_cols=43 Identities=28% Similarity=0.627 Sum_probs=32.3
Q ss_pred ccccccccc-CCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 003879 214 SVQCPICLE-YPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 267 (789)
Q Consensus 214 ~~~CPICLe-~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i 267 (789)
.-.|--|-- +.+--+|.+|.|+||+.|-... ..+.||.|-+.|
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~-----------~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARSD-----------SDKICPLCDDRV 133 (389)
T ss_pred eEeecccCCcceeeecccccchhhhhhhhhcC-----------ccccCcCcccHH
Confidence 456888874 3566789999999999996532 137899998755
No 64
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=0.032 Score=62.28 Aligned_cols=59 Identities=20% Similarity=0.345 Sum_probs=43.7
Q ss_pred CCcccccccccCC---CCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCceeEE
Q 003879 212 PLSVQCPICLEYP---LCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIH 276 (789)
Q Consensus 212 ~e~~~CPICLe~~---~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~ 276 (789)
+..+.|||=.+.- ..|+++.|||+.|..-|.+....+. ..++||.|-......+.+.|+
T Consensus 332 HSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~------~sfKCPYCP~e~~~~~~kql~ 393 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGS------QSFKCPYCPVEQLASDTKQLY 393 (394)
T ss_pred cceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCC------eeeeCCCCCcccCHHhccccc
Confidence 3468999977543 3578999999999999999887643 258999997665555544443
No 65
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=94.10 E-value=0.05 Score=43.80 Aligned_cols=42 Identities=21% Similarity=0.544 Sum_probs=33.5
Q ss_pred ccccccc--CCCCceecCCC-----CeecHHHHHHHHHcCCCCCCCCCcCCCCCcc
Q 003879 216 QCPICLE--YPLCPQITSCG-----HIFCFPCILQYLLMGDEDYKGDCFKRCPLCF 264 (789)
Q Consensus 216 ~CPICLe--~~~~Pvit~CG-----HiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr 264 (789)
.|-||++ ....+.+.+|. |.+...||.+|+.... ...||+|.
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~-------~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESG-------NKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcC-------CCcCCCCC
Confidence 4899997 45677788885 7899999999998643 35899994
No 66
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=93.68 E-value=0.073 Score=52.73 Aligned_cols=35 Identities=34% Similarity=0.779 Sum_probs=25.6
Q ss_pred CcccccccccCCCCceecCCC-C------eec------HHHHHHHHHc
Q 003879 213 LSVQCPICLEYPLCPQITSCG-H------IFC------FPCILQYLLM 247 (789)
Q Consensus 213 e~~~CPICLe~~~~Pvit~CG-H------iFC------~~CIl~~l~~ 247 (789)
++..|||||+.|.++|++-|. | ..| ..||.+|.+.
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka 48 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKA 48 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHH
Confidence 357899999999999987653 1 122 4588888775
No 67
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.16 E-value=0.024 Score=60.06 Aligned_cols=55 Identities=24% Similarity=0.538 Sum_probs=42.2
Q ss_pred CcccccccccCCC----------CceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCcee
Q 003879 213 LSVQCPICLEYPL----------CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 274 (789)
Q Consensus 213 e~~~CPICLe~~~----------~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 274 (789)
++..|.||-..+. +-..+.|+|+|.-.||.-|.-.++ ...||.|.+.+..+.+.+
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGK-------kqtCPYCKekVdl~rmfs 287 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGK-------KQTCPYCKEKVDLKRMFS 287 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecC-------CCCCchHHHHhhHhhhcc
Confidence 4678999986543 233679999999999999998754 378999999776665544
No 68
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.93 E-value=0.046 Score=61.14 Aligned_cols=50 Identities=24% Similarity=0.590 Sum_probs=35.8
Q ss_pred CcccccccccCCCC---ceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCc
Q 003879 213 LSVQCPICLEYPLC---PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 263 (789)
Q Consensus 213 e~~~CPICLe~~~~---Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlC 263 (789)
.-+.|.||++.... =+.++|+|+||..|+..|.......+.. ...+||-|
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v-~~l~Cp~~ 235 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQV-SCLKCPDP 235 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhccee-eeecCCCC
Confidence 35889999987654 3368999999999999998864422111 23577764
No 69
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=92.92 E-value=0.068 Score=57.49 Aligned_cols=51 Identities=31% Similarity=0.824 Sum_probs=40.6
Q ss_pred ccccccc-CCCCce----ecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCcee
Q 003879 216 QCPICLE-YPLCPQ----ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 274 (789)
Q Consensus 216 ~CPICLe-~~~~Pv----it~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 274 (789)
.||+|-. ...+|- +-.|||..|-.|+-+.+..+ ...||-|...+.+..++.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g--------~~~CpeC~~iLRk~nfr~ 57 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLG--------PAQCPECMVILRKNNFRV 57 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcC--------CCCCCcccchhhhcccch
Confidence 5999995 455554 34899999999999998874 378999999888877754
No 70
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.63 E-value=0.075 Score=57.79 Aligned_cols=45 Identities=31% Similarity=0.652 Sum_probs=37.6
Q ss_pred ccccccccCC------CCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 003879 215 VQCPICLEYP------LCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 267 (789)
Q Consensus 215 ~~CPICLe~~------~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i 267 (789)
+.|-||-+.+ ..|+++.|||.||..|+...+.. .+..||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~--------~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGN--------SRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcC--------ceeeccCCCCcc
Confidence 5799998764 36889999999999999998876 357899999984
No 71
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=92.59 E-value=0.017 Score=68.73 Aligned_cols=58 Identities=31% Similarity=0.570 Sum_probs=46.4
Q ss_pred CCCCcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCce
Q 003879 210 SNPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 273 (789)
Q Consensus 210 ~~~e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~ 273 (789)
.....+.||||+.....|..++|-|+||..|+...+.... ....||+|+..+.+..++
T Consensus 17 ~~~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~------~~~~~~lc~~~~eK~s~~ 74 (684)
T KOG4362|consen 17 AMQKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKK------GPKQCALCKSDIEKRSLR 74 (684)
T ss_pred HHhhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccC------ccccchhhhhhhhhhhcc
Confidence 3445789999999999999999999999999988777543 247899998766655543
No 72
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.32 E-value=0.055 Score=47.20 Aligned_cols=33 Identities=30% Similarity=0.605 Sum_probs=27.3
Q ss_pred cCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCcccccc
Q 003879 230 TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 268 (789)
Q Consensus 230 t~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~ 268 (789)
-.|.|.|-..||++|+.... ....||+||....
T Consensus 49 G~C~h~fh~hCI~~wl~~~t------sq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 49 GYCLHAFHAHCILKWLNTPT------SQGQCPMCRQTWQ 81 (84)
T ss_pred HHHHHHHHHHHHHHHhcCcc------ccccCCcchheeE
Confidence 36999999999999999765 3478999998543
No 73
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.29 E-value=0.1 Score=54.92 Aligned_cols=34 Identities=32% Similarity=0.407 Sum_probs=31.6
Q ss_pred cccccccccCCCCceecCCCCeecHHHHHHHHHc
Q 003879 214 SVQCPICLEYPLCPQITSCGHIFCFPCILQYLLM 247 (789)
Q Consensus 214 ~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~ 247 (789)
.-.|.+||.+..+|++++=||+||..||+.|+..
T Consensus 43 FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 43 FDCCSLTLQPCRDPVITPDGYLFDREAILEYILA 76 (303)
T ss_pred cceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence 4579999999999999999999999999999875
No 74
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=91.93 E-value=0.11 Score=56.34 Aligned_cols=74 Identities=22% Similarity=0.359 Sum_probs=48.8
Q ss_pred cCccCCccce--eeeecCC------CCcccccccccCC---CCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCc
Q 003879 195 PDKMLQWEDI--ICVRYSN------PLSVQCPICLEYP---LCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 263 (789)
Q Consensus 195 pd~~l~w~~v--~qv~~~~------~e~~~CPICLe~~---~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlC 263 (789)
-+.+++|.+- +-+.+.. +.-+.||+--+.. ..|+|+.|||+.-..-+.+.-..+. -.++||.|
T Consensus 309 ~~kHvdWT~~~eLP~eIklp~~~hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~------~~FKCPYC 382 (396)
T COG5109 309 FDKHVDWTDDSELPMEIKLPKGRHFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGV------LSFKCPYC 382 (396)
T ss_pred HhhccCccCCCCCceEEecCCcccccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCc------EEeeCCCC
Confidence 4578888531 2222222 2358899866543 3578999999999999888777644 35899999
Q ss_pred cccccCCCcee
Q 003879 264 FVMISSKELYT 274 (789)
Q Consensus 264 r~~i~~~~L~~ 274 (789)
-..-...+...
T Consensus 383 P~~~~~~~~~r 393 (396)
T COG5109 383 PEMSKYENILR 393 (396)
T ss_pred Ccchhhhhhhc
Confidence 66554444433
No 75
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=91.79 E-value=0.1 Score=43.02 Aligned_cols=47 Identities=21% Similarity=0.578 Sum_probs=36.3
Q ss_pred cccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCC
Q 003879 214 SVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKE 271 (789)
Q Consensus 214 ~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~ 271 (789)
...|-.|...-...++++|||..|..|.-- .+..-||+|..++...+
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~-----------~rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPG-----------ERYNGCPFCGTPFEFDD 53 (55)
T ss_pred ceeEEEccccccccccccccceeeccccCh-----------hhccCCCCCCCcccCCC
Confidence 456888888888888999999999999532 13578999998875443
No 76
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=91.66 E-value=0.079 Score=59.34 Aligned_cols=37 Identities=27% Similarity=0.665 Sum_probs=32.9
Q ss_pred CCcccccccccCCCCceecCCCCeecHHHHHHHHHcC
Q 003879 212 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMG 248 (789)
Q Consensus 212 ~e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~ 248 (789)
++++.||||...+.+|++++|||..|.-|-+..+...
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~t 38 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILVQT 38 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhcccC
Confidence 3678999999999999999999999999988766653
No 77
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=91.51 E-value=0.11 Score=56.81 Aligned_cols=47 Identities=28% Similarity=0.641 Sum_probs=38.5
Q ss_pred CcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCcccc
Q 003879 213 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVM 266 (789)
Q Consensus 213 e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~ 266 (789)
+...|-||-+-..-.-+++|||..|.-|-++.-..- ..+.||+|+..
T Consensus 60 en~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY-------~~K~C~~CrTE 106 (493)
T COG5236 60 ENMNCQICAGSTTYSARYPCGHQICHACAVRLRALY-------MQKGCPLCRTE 106 (493)
T ss_pred ccceeEEecCCceEEEeccCCchHHHHHHHHHHHHH-------hccCCCccccc
Confidence 457799999998888899999999999988865542 23789999863
No 78
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=91.11 E-value=0.17 Score=44.54 Aligned_cols=29 Identities=31% Similarity=0.484 Sum_probs=25.0
Q ss_pred cCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 003879 230 TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 267 (789)
Q Consensus 230 t~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i 267 (789)
-.|.|.|...||.+||.. ...||+|+...
T Consensus 52 G~CnHaFH~HCI~rWL~T---------k~~CPld~q~w 80 (88)
T COG5194 52 GVCNHAFHDHCIYRWLDT---------KGVCPLDRQTW 80 (88)
T ss_pred EecchHHHHHHHHHHHhh---------CCCCCCCCcee
Confidence 469999999999999996 25899998854
No 79
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.51 E-value=0.082 Score=61.85 Aligned_cols=32 Identities=31% Similarity=0.705 Sum_probs=26.6
Q ss_pred ccccccccCCC----CceecCCCCeecHHHHHHHHH
Q 003879 215 VQCPICLEYPL----CPQITSCGHIFCFPCILQYLL 246 (789)
Q Consensus 215 ~~CPICLe~~~----~Pvit~CGHiFC~~CIl~~l~ 246 (789)
+.|+||+..+. .|+.+.|||+.|..|+.....
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn 47 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN 47 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh
Confidence 57999987764 688899999999999877554
No 80
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=89.86 E-value=0.25 Score=54.00 Aligned_cols=57 Identities=21% Similarity=0.406 Sum_probs=38.5
Q ss_pred CcccccccccCCCC--ce--ecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCceeEEe
Q 003879 213 LSVQCPICLEYPLC--PQ--ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHI 277 (789)
Q Consensus 213 e~~~CPICLe~~~~--Pv--it~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~ 277 (789)
++..||+|++++.. -- -.+||-..|.-|.-..-.. -..+||-||......+++-+.+
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~--------lngrcpacrr~y~denv~~~~~ 73 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQN--------LNGRCPACRRKYDDENVRYVTL 73 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhh--------ccCCChHhhhhccccceeEEec
Confidence 34459999997642 22 3568887788886554332 2368999999888877765544
No 81
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=89.81 E-value=0.29 Score=47.20 Aligned_cols=51 Identities=24% Similarity=0.551 Sum_probs=43.1
Q ss_pred CcccccccccCCCCceecC----CCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccC
Q 003879 213 LSVQCPICLEYPLCPQITS----CGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 269 (789)
Q Consensus 213 e~~~CPICLe~~~~Pvit~----CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~ 269 (789)
.-++|-||.+...+.+.++ ||-..|.-|....|+... -...||.|...+..
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~------~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCN------LYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcc------cCCCCCcccccccc
Confidence 5689999999988888654 999999999999998755 46899999887754
No 82
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=89.39 E-value=0.65 Score=44.94 Aligned_cols=65 Identities=17% Similarity=0.304 Sum_probs=49.2
Q ss_pred CceEEEecCCCCceeechhcHHHHHHhhCCCCCCCCcceeeEEEEeeecccH-HHHHhhccccccCCCceEEEEEec
Q 003879 535 DSYNFYQAIDGQHLILHPLNLKCLLHHYGSYDMLPHRISGRILQLESVTQSE-AMRRRYRYLSHFSLTTTFQLCEID 610 (789)
Q Consensus 535 ~~YyFYQA~dGq~~yLhPLdiRiL~~~fGsy~~fP~tI~~rVeeie~~tvdE-elRKR~KYLsHLPlgce~~f~E~D 610 (789)
.+|.=|+. +++|||||.=++.- .-..-|.-|.|+|++||..++++ .--.|| +||.||.|..|++.
T Consensus 62 ~~~~af~~-~~~~YFL~~~s~~~------~~~~~~~w~vgrI~~~e~~~v~~~~~~Npy----~Lp~Gt~~y~V~v~ 127 (129)
T PF10377_consen 62 QPWAAFNV-GCPHYFLHEDSIAA------NELKRREWIVGRIVSIEECQVKDDKDSNPY----NLPVGTKFYRVTVE 127 (129)
T ss_pred cceEEeeC-CCceEEEecccchh------ccCCCCCEEEEEEEEEEEEEeccCCCCCCC----cCCCCCEEEEEEEE
Confidence 45877777 57999999988764 11223899999999999988852 122444 69999999999875
No 83
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=89.18 E-value=0.28 Score=39.44 Aligned_cols=43 Identities=30% Similarity=0.505 Sum_probs=21.3
Q ss_pred ccccccCCCC--cee--cCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 003879 217 CPICLEYPLC--PQI--TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 267 (789)
Q Consensus 217 CPICLe~~~~--Pvi--t~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i 267 (789)
||+|.+.+.. -.+ -.||+.+|..|..+.+.. ...+||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~--------~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILEN--------EGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTS--------S-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhc--------cCCCCCCCCCCC
Confidence 8999987622 123 368999999998887763 247899999853
No 84
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=89.02 E-value=0.12 Score=54.06 Aligned_cols=58 Identities=26% Similarity=0.599 Sum_probs=43.2
Q ss_pred Cccccccccc-CCCCcee----c-CCCCeecHHHHHHHHHcCCCCCCCCCcCCCC--CccccccCCCceeEEee
Q 003879 213 LSVQCPICLE-YPLCPQI----T-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCP--LCFVMISSKELYTIHIE 278 (789)
Q Consensus 213 e~~~CPICLe-~~~~Pvi----t-~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CP--lCr~~i~~~~L~~v~~~ 278 (789)
++..||||.. ....|-+ - .|-|.+|-.|+.+.+..+. ..|| -|...+++..++.-.+.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~Gp--------AqCP~~gC~kILRK~kf~~qtFe 74 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGP--------AQCPYKGCGKILRKIKFIKQTFE 74 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCC--------CCCCCccHHHHHHHhcccccccc
Confidence 3568999994 4555542 2 4999999999999998754 6899 79988887776654443
No 85
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=88.69 E-value=0.29 Score=53.78 Aligned_cols=44 Identities=27% Similarity=0.671 Sum_probs=35.4
Q ss_pred CcccccccccCCCCcee-cCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCcccccc
Q 003879 213 LSVQCPICLEYPLCPQI-TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 268 (789)
Q Consensus 213 e~~~CPICLe~~~~Pvi-t~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~ 268 (789)
+-+.||||.+.+..|++ -.=||.-|..|-... ..+||.|+.++.
T Consensus 47 ~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~------------~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV------------SNKCPTCRLPIG 91 (299)
T ss_pred hhccCchhhccCcccceecCCCcEehhhhhhhh------------cccCCccccccc
Confidence 45789999999998863 455999999997632 368999999886
No 86
>PHA03096 p28-like protein; Provisional
Probab=88.33 E-value=0.24 Score=53.96 Aligned_cols=45 Identities=22% Similarity=0.221 Sum_probs=31.8
Q ss_pred ccccccccCCCC--------ceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccc
Q 003879 215 VQCPICLEYPLC--------PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFV 265 (789)
Q Consensus 215 ~~CPICLe~~~~--------Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~ 265 (789)
-.|.||++.... ..+..|-|.||..||..|...... ...||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~------~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLY------KETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhh------cccCccccc
Confidence 679999986432 124589999999999999986432 245555544
No 87
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=87.88 E-value=0.14 Score=64.32 Aligned_cols=44 Identities=34% Similarity=0.691 Sum_probs=37.7
Q ss_pred CcccccccccCCC-CceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccc
Q 003879 213 LSVQCPICLEYPL-CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFV 265 (789)
Q Consensus 213 e~~~CPICLe~~~-~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~ 265 (789)
....|+||++.+. ...++.|||.+|..|+.-|+.. ...||+|..
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~---------~s~~~~~ks 1196 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA---------SSRCPICKS 1196 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH---------hccCcchhh
Confidence 3568999999988 5558999999999999999985 478999963
No 88
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=87.80 E-value=0.085 Score=56.85 Aligned_cols=56 Identities=32% Similarity=0.572 Sum_probs=38.5
Q ss_pred CcccccccccCCC-Cc--eecCCCCeecHHHHHHHHHcCCCC-------------C-CCCCcCCCCCcccccc
Q 003879 213 LSVQCPICLEYPL-CP--QITSCGHIFCFPCILQYLLMGDED-------------Y-KGDCFKRCPLCFVMIS 268 (789)
Q Consensus 213 e~~~CPICLe~~~-~P--vit~CGHiFC~~CIl~~l~~~~~~-------------~-k~~~~~~CPlCr~~i~ 268 (789)
..-.|.|||.-|. .| ..|.|-|.|...|+-+|+...... + +..-...||+||..|.
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 4578999997664 34 378999999999999998742110 0 1112346999998663
No 89
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=86.71 E-value=0.24 Score=55.18 Aligned_cols=46 Identities=28% Similarity=0.545 Sum_probs=36.1
Q ss_pred CcccccccccCC--C--CceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccc
Q 003879 213 LSVQCPICLEYP--L--CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFV 265 (789)
Q Consensus 213 e~~~CPICLe~~--~--~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~ 265 (789)
-++.|-.|-+.+ . .-.-++|.|||...|+..++... ....||.||.
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n-------~~rsCP~Crk 413 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENN-------GTRSCPNCRK 413 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhC-------CCCCCccHHH
Confidence 368899999754 2 22358999999999999999753 3489999985
No 90
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=86.17 E-value=3.5 Score=50.47 Aligned_cols=55 Identities=27% Similarity=0.507 Sum_probs=40.2
Q ss_pred CCCCcccccccccCC--CCce--ecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCcccc
Q 003879 210 SNPLSVQCPICLEYP--LCPQ--ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVM 266 (789)
Q Consensus 210 ~~~e~~~CPICLe~~--~~Pv--it~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~ 266 (789)
.....+.|-||++.+ .+|+ ...|-|+|.+.||..|-...+. ..+ ...+||.|...
T Consensus 187 l~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek-~~~-~~WrCP~Cqsv 245 (950)
T KOG1952|consen 187 LSNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEK-TGQ-DGWRCPACQSV 245 (950)
T ss_pred HhcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhh-ccC-ccccCCcccch
Confidence 345679999999875 4565 3568899999999999887332 112 34679999843
No 91
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.03 E-value=0.66 Score=53.67 Aligned_cols=62 Identities=29% Similarity=0.521 Sum_probs=42.8
Q ss_pred CcccccccccCCCC-ceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCC--ccccccCCCceeE
Q 003879 213 LSVQCPICLEYPLC-PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPL--CFVMISSKELYTI 275 (789)
Q Consensus 213 e~~~CPICLe~~~~-Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPl--Cr~~i~~~~L~~v 275 (789)
....|.||.+.+.. .....|||.||..|+..|+...-....... .+||. |...+....+..+
T Consensus 69 ~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~-i~cp~~~C~a~v~~~~i~~~ 133 (444)
T KOG1815|consen 69 GDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTKIHEGEEAK-IKCPAHGCPALVGEDTVEKL 133 (444)
T ss_pred ccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhheeecccccc-ccCCCCCccccCCCceeeee
Confidence 45789999988775 557799999999999999986432211111 45654 7776665555443
No 92
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.78 E-value=0.39 Score=51.60 Aligned_cols=37 Identities=27% Similarity=0.663 Sum_probs=32.4
Q ss_pred CcccccccccCCCCceecCC----CCeecHHHHHHHHHcCC
Q 003879 213 LSVQCPICLEYPLCPQITSC----GHIFCFPCILQYLLMGD 249 (789)
Q Consensus 213 e~~~CPICLe~~~~Pvit~C----GHiFC~~CIl~~l~~~~ 249 (789)
..+.|-+|.+.+.+-....| .|.||++|-...++.+.
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg 307 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQG 307 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhc
Confidence 45899999999999888888 79999999999988654
No 93
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=84.66 E-value=0.65 Score=58.68 Aligned_cols=60 Identities=27% Similarity=0.402 Sum_probs=39.9
Q ss_pred CcccccccccC-C-CCce-ecCCCCeecHHHHHHHHHcCCCCC-CCCCcCCCCCccccccCCCc
Q 003879 213 LSVQCPICLEY-P-LCPQ-ITSCGHIFCFPCILQYLLMGDEDY-KGDCFKRCPLCFVMISSKEL 272 (789)
Q Consensus 213 e~~~CPICLe~-~-~~Pv-it~CGHiFC~~CIl~~l~~~~~~~-k~~~~~~CPlCr~~i~~~~L 272 (789)
.+..|-||+.. + .+|. .+.|||+|.+.|..+.+...=... -.-....||+|..+|..--|
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~L 3548 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIVL 3548 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHHH
Confidence 35789999965 3 3444 689999999999998887521000 00012579999888764443
No 94
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=83.25 E-value=0.7 Score=42.74 Aligned_cols=26 Identities=38% Similarity=0.781 Sum_probs=22.9
Q ss_pred CCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccc
Q 003879 231 SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFV 265 (789)
Q Consensus 231 ~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~ 265 (789)
.|.|.|.+-||.+|+++. ..||+|..
T Consensus 80 ~CNHaFH~hCisrWlktr---------~vCPLdn~ 105 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTR---------NVCPLDNK 105 (114)
T ss_pred ecchHHHHHHHHHHHhhc---------CcCCCcCc
Confidence 599999999999999973 58999965
No 95
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=83.03 E-value=0.69 Score=55.56 Aligned_cols=52 Identities=15% Similarity=0.091 Sum_probs=32.4
Q ss_pred CcccccccccCCCCce----ec---CCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 003879 213 LSVQCPICLEYPLCPQ----IT---SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 267 (789)
Q Consensus 213 e~~~CPICLe~~~~Pv----it---~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i 267 (789)
+..+|+||.-.+..++ +. .|+|.||..||+.|...-.... ....|++|...|
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~---k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESE---KHTAHYFCEECV 153 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccc---cccccccHHHHh
Confidence 3455666665444322 33 4999999999999988644322 235677775544
No 96
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.92 E-value=0.89 Score=47.42 Aligned_cols=53 Identities=19% Similarity=0.362 Sum_probs=39.1
Q ss_pred cccccccccCCC--CceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 003879 214 SVQCPICLEYPL--CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 267 (789)
Q Consensus 214 ~~~CPICLe~~~--~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i 267 (789)
...|.+|-..+. +.+.+.|-|.|.|.|+-.|...-... .......||.|...|
T Consensus 50 ~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPan-TAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPAN-TAPAGYQCPCCSQEI 104 (299)
T ss_pred CCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCc-CCCCcccCCCCCCcc
Confidence 467999998775 45577899999999999998754321 112357899997654
No 97
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=82.80 E-value=0.54 Score=42.81 Aligned_cols=30 Identities=27% Similarity=0.641 Sum_probs=24.6
Q ss_pred CcccccccccCCCCce--ecCCCCeecHHHHH
Q 003879 213 LSVQCPICLEYPLCPQ--ITSCGHIFCFPCIL 242 (789)
Q Consensus 213 e~~~CPICLe~~~~Pv--it~CGHiFC~~CIl 242 (789)
+...|++|-..+.... +.+|||+|++.|+.
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 4567999998877655 57999999999974
No 98
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.77 E-value=0.66 Score=56.35 Aligned_cols=39 Identities=26% Similarity=0.584 Sum_probs=33.0
Q ss_pred ccccccccCCCCce-ecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccc
Q 003879 215 VQCPICLEYPLCPQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFV 265 (789)
Q Consensus 215 ~~CPICLe~~~~Pv-it~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~ 265 (789)
..|.+|-..+.-|. ...|||.|...|+.. +..+||.|+.
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsyHqhC~e~------------~~~~CP~C~~ 880 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSYHQHCLED------------KEDKCPKCLP 880 (933)
T ss_pred eeecccCCccccceeeeecccHHHHHhhcc------------CcccCCccch
Confidence 58999999998887 579999999999871 3479999965
No 99
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=80.89 E-value=0.77 Score=36.77 Aligned_cols=33 Identities=27% Similarity=0.764 Sum_probs=22.1
Q ss_pred eecCCC-CeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccC
Q 003879 228 QITSCG-HIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 269 (789)
Q Consensus 228 vit~CG-HiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~ 269 (789)
-...|. |..|+.|+...+.. ...||+|..++..
T Consensus 14 ~Li~C~dHYLCl~CLt~ml~~---------s~~C~iC~~~LPt 47 (50)
T PF03854_consen 14 GLIKCSDHYLCLNCLTLMLSR---------SDRCPICGKPLPT 47 (50)
T ss_dssp SEEE-SS-EEEHHHHHHT-SS---------SSEETTTTEE---
T ss_pred CeeeecchhHHHHHHHHHhcc---------ccCCCcccCcCcc
Confidence 366775 99999999988874 4689999987753
No 100
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.69 E-value=0.82 Score=52.00 Aligned_cols=57 Identities=28% Similarity=0.604 Sum_probs=37.2
Q ss_pred Ccccccccc-cCCCCce---ecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCC--ccccccCCCc
Q 003879 213 LSVQCPICL-EYPLCPQ---ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPL--CFVMISSKEL 272 (789)
Q Consensus 213 e~~~CPICL-e~~~~Pv---it~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPl--Cr~~i~~~~L 272 (789)
....|.||. +.+.... +..|||-||..|+.+|+..... ......||. |...+....+
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~---~~~~~~C~~~~C~~~l~~~~c 207 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLL---SGTVIRCPHDGCESRLTLESC 207 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhc---cCCCccCCCCCCCccCCHHHH
Confidence 357899999 5554433 4679999999999999986521 112456754 5444443333
No 101
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=79.80 E-value=2.1 Score=34.61 Aligned_cols=46 Identities=24% Similarity=0.627 Sum_probs=22.6
Q ss_pred ccccccccCCCCce-ecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccc
Q 003879 215 VQCPICLEYPLCPQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFV 265 (789)
Q Consensus 215 ~~CPICLe~~~~Pv-it~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~ 265 (789)
+.|||....+..|+ -..|-|.-|++ +..|+..... ....+||+|..
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~~~----~~~W~CPiC~~ 49 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESNQR----TPKWKCPICNK 49 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EE-HHHHHHHHHH----S---B-TTT--
T ss_pred eeCCCCCCEEEeCccCCcCcccceEC-HHHHHHHhhc----cCCeECcCCcC
Confidence 67999999999888 56899997755 3334433211 02367999975
No 102
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.92 E-value=0.86 Score=55.75 Aligned_cols=35 Identities=26% Similarity=0.531 Sum_probs=28.4
Q ss_pred cccccccccC-CCCce-ecCCCCeecHHHHHHHHHcC
Q 003879 214 SVQCPICLEY-PLCPQ-ITSCGHIFCFPCILQYLLMG 248 (789)
Q Consensus 214 ~~~CPICLe~-~~~Pv-it~CGHiFC~~CIl~~l~~~ 248 (789)
.-+|-+|.-. +..|. +.+|||.|.+.||++.....
T Consensus 817 ~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~~~ 853 (911)
T KOG2034|consen 817 QDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVLSL 853 (911)
T ss_pred ccchHHhcchhhcCcceeeeccchHHHHHHHHHHHcc
Confidence 4689999975 45666 67999999999999987653
No 103
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.13 E-value=1.7 Score=45.40 Aligned_cols=38 Identities=26% Similarity=0.587 Sum_probs=30.5
Q ss_pred ccccccCCCCceecCCCC-eecHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 003879 217 CPICLEYPLCPQITSCGH-IFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 267 (789)
Q Consensus 217 CPICLe~~~~Pvit~CGH-iFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i 267 (789)
|-+|.+.-..-.+++|-| ++|-.|-.. -..||+|+.+.
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~-------------~~~CPiC~~~~ 199 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES-------------LRICPICRSPK 199 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc-------------CccCCCCcChh
Confidence 999999888877899997 689999321 36799998754
No 104
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=73.30 E-value=1.3 Score=43.08 Aligned_cols=33 Identities=24% Similarity=0.550 Sum_probs=25.6
Q ss_pred cccccccccCCCC--ce-ecCCC------CeecHHHHHHHHH
Q 003879 214 SVQCPICLEYPLC--PQ-ITSCG------HIFCFPCILQYLL 246 (789)
Q Consensus 214 ~~~CPICLe~~~~--Pv-it~CG------HiFC~~CIl~~l~ 246 (789)
..+|.||++...+ .+ ...|| |.||..|+.+|-.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 5789999987765 54 34665 6699999999954
No 105
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=71.86 E-value=3.9 Score=49.71 Aligned_cols=73 Identities=23% Similarity=0.499 Sum_probs=48.9
Q ss_pred Cccccccccc--CCCCceecCCCCe-----ecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCceeEEeecccccCC
Q 003879 213 LSVQCPICLE--YPLCPQITSCGHI-----FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHIENVRQHAV 285 (789)
Q Consensus 213 e~~~CPICLe--~~~~Pvit~CGHi-----FC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~~~~~~~~~ 285 (789)
+..+|-||.. ...+|..-+|.+. ....|++.|+.-+. .++|-+|..++.-+++. -++ .
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~-------~~kCdiChy~~~Fk~IY---~e~-----m 75 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSG-------TKKCDICHYEYKFKDIY---KED-----M 75 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCC-------Ccceeeecceeeeeeec---ccC-----C
Confidence 4578999995 4668887777553 47889999998533 47999998866544433 222 2
Q ss_pred CCceEEEEeecCCCC
Q 003879 286 GDTIEFMLLIREKDS 300 (789)
Q Consensus 286 gd~v~l~Lm~R~~~S 300 (789)
-+.+-|.+++|.-.+
T Consensus 76 P~~IPfsiL~rk~a~ 90 (1175)
T COG5183 76 PQIIPFSILIRKVAD 90 (1175)
T ss_pred CcccceehhHHHHHH
Confidence 245556666665444
No 106
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=71.63 E-value=2.4 Score=47.66 Aligned_cols=41 Identities=15% Similarity=0.534 Sum_probs=29.1
Q ss_pred CCCeecHHHHHHHHHcCCCCCCCCC----cCCCCCccccccCCCc
Q 003879 232 CGHIFCFPCILQYLLMGDEDYKGDC----FKRCPLCFVMISSKEL 272 (789)
Q Consensus 232 CGHiFC~~CIl~~l~~~~~~~k~~~----~~~CPlCr~~i~~~~L 272 (789)
|.-..|..|+-+|+...++...... ...||.||+.+...|+
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV 355 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDV 355 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeee
Confidence 4445799999999998775432222 2579999998876554
No 107
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=69.05 E-value=5.1 Score=31.41 Aligned_cols=40 Identities=25% Similarity=0.526 Sum_probs=23.3
Q ss_pred ccccccCCCCceec---CCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCc
Q 003879 217 CPICLEYPLCPQIT---SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 263 (789)
Q Consensus 217 CPICLe~~~~Pvit---~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlC 263 (789)
|-+|.++....+.- .|+=.+...|+..|+.... ..+||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~-------~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRS-------NPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-S-------S-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCC-------CCCCcCC
Confidence 67888887776653 4988899999999998643 2479987
No 108
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=68.84 E-value=2.8 Score=45.53 Aligned_cols=43 Identities=30% Similarity=0.720 Sum_probs=34.6
Q ss_pred cccccccccCC----CCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccc
Q 003879 214 SVQCPICLEYP----LCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFV 265 (789)
Q Consensus 214 ~~~CPICLe~~----~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~ 265 (789)
...||||.+.+ ..+...+|||..-..|+..+... . ..||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~--------~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICE--------G-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhcc--------C-CCCCcccc
Confidence 45699999864 45668899999989998888764 3 89999966
No 109
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.37 E-value=6 Score=42.25 Aligned_cols=49 Identities=14% Similarity=0.299 Sum_probs=35.9
Q ss_pred CcccccccccCCCCc----eecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCc
Q 003879 213 LSVQCPICLEYPLCP----QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKEL 272 (789)
Q Consensus 213 e~~~CPICLe~~~~P----vit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L 272 (789)
..+.|||---++..- .+..|||+|-..-+.+.- ...|++|...+...++
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik-----------as~C~~C~a~y~~~dv 162 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK-----------ASVCHVCGAAYQEDDV 162 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhh-----------hccccccCCcccccCe
Confidence 357899977555432 356899999988877653 3689999997766664
No 110
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.17 E-value=3.8 Score=39.73 Aligned_cols=34 Identities=24% Similarity=0.426 Sum_probs=24.7
Q ss_pred cCCCCcccccccccC-CCCceecCCCCeecHHHHHHHHHc
Q 003879 209 YSNPLSVQCPICLEY-PLCPQITSCGHIFCFPCILQYLLM 247 (789)
Q Consensus 209 ~~~~e~~~CPICLe~-~~~Pvit~CGHiFC~~CIl~~l~~ 247 (789)
+...++.+|-||+-. |.+ .|||+ |.+|-+++...
T Consensus 60 aGv~ddatC~IC~KTKFAD----G~GH~-C~YCq~r~CAR 94 (169)
T KOG3799|consen 60 AGVGDDATCGICHKTKFAD----GCGHN-CSYCQTRFCAR 94 (169)
T ss_pred cccCcCcchhhhhhccccc----ccCcc-cchhhhhHHHh
Confidence 345678899999964 443 59995 88897776654
No 111
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=60.18 E-value=9.8 Score=38.13 Aligned_cols=48 Identities=17% Similarity=0.285 Sum_probs=34.1
Q ss_pred CCcccccccccCCCCceecCCCCe-----ecHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 003879 212 PLSVQCPICLEYPLCPQITSCGHI-----FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 267 (789)
Q Consensus 212 ~e~~~CPICLe~~~~Pvit~CGHi-----FC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i 267 (789)
..+..|=||.+... +...+|... -...|+.+|+.... ...|++|....
T Consensus 6 ~~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~-------~~~CeiC~~~Y 58 (162)
T PHA02825 6 LMDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSK-------NKSCKICNGPY 58 (162)
T ss_pred CCCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCC-------CCcccccCCeE
Confidence 34678999997753 234566542 37899999999643 47899998854
No 112
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=58.91 E-value=2.3 Score=46.60 Aligned_cols=59 Identities=22% Similarity=0.525 Sum_probs=37.9
Q ss_pred cCCCCccccccccc-CCC--Cce--ecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccC
Q 003879 209 YSNPLSVQCPICLE-YPL--CPQ--ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 269 (789)
Q Consensus 209 ~~~~e~~~CPICLe-~~~--~Pv--it~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~ 269 (789)
++..+...|.+|.- .|. .-+ .-.||+|||..|-..-+.......+ .-+.|+.|+..+.+
T Consensus 163 ~PD~ea~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~~~k--~~rvC~~CF~el~~ 226 (288)
T KOG1729|consen 163 LPDSEATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNLSTK--PIRVCDICFEELEK 226 (288)
T ss_pred cCcccceecccCCCccccHHHHHHHHHhcchHhhhhhhcCcccccccCCC--CceecHHHHHHHhc
Confidence 45667789999997 443 222 4579999999996653332221111 23589999887654
No 113
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=58.19 E-value=0.72 Score=39.97 Aligned_cols=40 Identities=30% Similarity=0.508 Sum_probs=22.6
Q ss_pred ccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCcccccc
Q 003879 215 VQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 268 (789)
Q Consensus 215 ~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~ 268 (789)
+.||.|..++. +. =||.+|..|-..|... ..||.|..++.
T Consensus 2 ~~CP~C~~~L~-~~---~~~~~C~~C~~~~~~~----------a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELE-WQ---GGHYHCEACQKDYKKE----------AFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEE-EE---TTEEEETTT--EEEEE----------EE-TTT-SB-E
T ss_pred CcCCCCCCccE-Ee---CCEEECccccccceec----------ccCCCcccHHH
Confidence 57999997743 11 1899999998776543 68999988653
No 114
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.81 E-value=7.1 Score=42.46 Aligned_cols=41 Identities=20% Similarity=0.627 Sum_probs=30.0
Q ss_pred CCCeecHHHHHHHHHcCCCC------CCCCCcCCCCCccccccCCCcee
Q 003879 232 CGHIFCFPCILQYLLMGDED------YKGDCFKRCPLCFVMISSKELYT 274 (789)
Q Consensus 232 CGHiFC~~CIl~~l~~~~~~------~k~~~~~~CPlCr~~i~~~~L~~ 274 (789)
|....|..|+-+|+...+++ +.+ ...||.||+.+...|+.-
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~--~~~cp~cr~~fci~dv~~ 371 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRG--SAQCPTCRKNFCIRDVHC 371 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhc--CCCCcchhhceEEeeeeE
Confidence 55667899999999876543 223 478999999887666543
No 115
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=55.82 E-value=5.7 Score=27.98 Aligned_cols=21 Identities=33% Similarity=0.754 Sum_probs=12.1
Q ss_pred cccccccC-CCCcee-cCCCCee
Q 003879 216 QCPICLEY-PLCPQI-TSCGHIF 236 (789)
Q Consensus 216 ~CPICLe~-~~~Pvi-t~CGHiF 236 (789)
.||-|... +..... ..|||.|
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 48888754 344333 3477766
No 116
>PHA02862 5L protein; Provisional
Probab=53.10 E-value=13 Score=36.79 Aligned_cols=46 Identities=22% Similarity=0.407 Sum_probs=33.1
Q ss_pred ccccccccCCCCceecCCCC-----eecHHHHHHHHHcCCCCCCCCCcCCCCCcccccc
Q 003879 215 VQCPICLEYPLCPQITSCGH-----IFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 268 (789)
Q Consensus 215 ~~CPICLe~~~~Pvit~CGH-----iFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~ 268 (789)
..|=||.+.-... ..+|.. .-...|+.+|+.... ...|++|+....
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~-------k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSK-------KKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCC-------CcCccCCCCeEE
Confidence 4699999764333 456654 246889999997643 478999988764
No 117
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=50.75 E-value=9.5 Score=30.43 Aligned_cols=40 Identities=28% Similarity=0.687 Sum_probs=24.6
Q ss_pred ccccccCC--CCceecCCCC-----eecHHHHHHHHHcCCCCCCCCCcCCCCCc
Q 003879 217 CPICLEYP--LCPQITSCGH-----IFCFPCILQYLLMGDEDYKGDCFKRCPLC 263 (789)
Q Consensus 217 CPICLe~~--~~Pvit~CGH-----iFC~~CIl~~l~~~~~~~k~~~~~~CPlC 263 (789)
|-||++.- ..+.+.+|+- .....||.+|+.... ..+|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~-------~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESG-------NRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT--------SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcC-------CCcCCCC
Confidence 67899643 2357788853 246789999999732 3679987
No 118
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=50.35 E-value=19 Score=40.06 Aligned_cols=45 Identities=29% Similarity=0.486 Sum_probs=32.7
Q ss_pred cccccccccCCCC--c--eecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 003879 214 SVQCPICLEYPLC--P--QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 267 (789)
Q Consensus 214 ~~~CPICLe~~~~--P--vit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i 267 (789)
...||||.+.... - .-.+||+..|+.|+..-.. ....||.|+...
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~---------~~~~~~~~rk~~ 297 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISD---------GDGRCPGCRKPY 297 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhcccc---------cCCCCCccCCcc
Confidence 4789999987632 1 2357899999999877554 247899999543
No 119
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.37 E-value=13 Score=37.88 Aligned_cols=55 Identities=27% Similarity=0.468 Sum_probs=35.7
Q ss_pred cccccccccCCCCce-------ecCCCCeecHHHHHHHHHcCCCCCC--CCCcCCCCCcccccc
Q 003879 214 SVQCPICLEYPLCPQ-------ITSCGHIFCFPCILQYLLMGDEDYK--GDCFKRCPLCFVMIS 268 (789)
Q Consensus 214 ~~~CPICLe~~~~Pv-------it~CGHiFC~~CIl~~l~~~~~~~k--~~~~~~CPlCr~~i~ 268 (789)
--.|-||..+-.... -..||..|..-|+..|+..--.... ..-...||.|..+|.
T Consensus 165 ~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 165 LGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred hhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 457889986543322 2479999999999999984221100 001357999988764
No 120
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=46.17 E-value=10 Score=40.68 Aligned_cols=43 Identities=33% Similarity=0.506 Sum_probs=35.7
Q ss_pred cccccccccCCCCcee-cCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCc
Q 003879 214 SVQCPICLEYPLCPQI-TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 263 (789)
Q Consensus 214 ~~~CPICLe~~~~Pvi-t~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlC 263 (789)
.+.|||-....++|++ ..|||+|=..-|..++.-. ....||+-
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~-------~~i~CPv~ 219 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDE-------ITIRCPVL 219 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccC-------ceeecccc
Confidence 6899999999999995 6899999999999988641 34788874
No 121
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=45.48 E-value=15 Score=34.33 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=22.6
Q ss_pred CCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 003879 233 GHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 267 (789)
Q Consensus 233 GHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i 267 (789)
.=.||..||.........+........||.|+...
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiC 71 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGIC 71 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCee
Confidence 66799999988776432111112346899998854
No 122
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.14 E-value=10 Score=43.30 Aligned_cols=34 Identities=29% Similarity=0.544 Sum_probs=24.7
Q ss_pred cccccccccCCC-----CceecCCCCeecHHHHHHHHHc
Q 003879 214 SVQCPICLEYPL-----CPQITSCGHIFCFPCILQYLLM 247 (789)
Q Consensus 214 ~~~CPICLe~~~-----~Pvit~CGHiFC~~CIl~~l~~ 247 (789)
-..||+|..... .-++-.|||-||+.|...|...
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~ 344 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTH 344 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhC
Confidence 467999986543 2234469999999999888663
No 123
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=43.92 E-value=8 Score=47.46 Aligned_cols=69 Identities=16% Similarity=0.483 Sum_probs=44.2
Q ss_pred CCCcCccCCccceeeeecCCCCcccccccccCCC--CceecCCCCeecHHHHHHHH-HcCCCCCCCCCcCCCCCcccccc
Q 003879 192 SMDPDKMLQWEDIICVRYSNPLSVQCPICLEYPL--CPQITSCGHIFCFPCILQYL-LMGDEDYKGDCFKRCPLCFVMIS 268 (789)
Q Consensus 192 ~~dpd~~l~w~~v~qv~~~~~e~~~CPICLe~~~--~Pvit~CGHiFC~~CIl~~l-~~~~~~~k~~~~~~CPlCr~~i~ 268 (789)
...++..+.|...+. .....|-.|..... --+...|||.+|+.|+..|. ....+ ....+|+.||..+.
T Consensus 212 ~~~~~~~~a~k~a~~-----g~~~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~p~~~~~----e~a~k~~~~~~~C~ 282 (889)
T KOG1356|consen 212 MQRPDQKVAWKRAVK-----GIREMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWYPRLSKE----EVAEKCEFSWLKCN 282 (889)
T ss_pred ccCcccccchhhccc-----CcchhhhhhcccccceeEEccccCCeeeecchhhccccchHh----HhhhhhhHHHHhcC
Confidence 446677788854432 22468999996554 34578999999999999985 11111 12346777766554
Q ss_pred C
Q 003879 269 S 269 (789)
Q Consensus 269 ~ 269 (789)
.
T Consensus 283 ~ 283 (889)
T KOG1356|consen 283 K 283 (889)
T ss_pred C
Confidence 3
No 124
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=43.43 E-value=6.2 Score=43.67 Aligned_cols=43 Identities=21% Similarity=0.557 Sum_probs=32.2
Q ss_pred cccccccccCCCCceecC----CC--CeecHHHHHHHHHcCCCCCCCCCcCCCCCccc
Q 003879 214 SVQCPICLEYPLCPQITS----CG--HIFCFPCILQYLLMGDEDYKGDCFKRCPLCFV 265 (789)
Q Consensus 214 ~~~CPICLe~~~~Pvit~----CG--HiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~ 265 (789)
...||||-..|+..++.. =| +.+|..|-..|-.. -.+||.|..
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~---------R~~C~~Cg~ 232 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYV---------RVKCSHCEE 232 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccccc---------CccCCCCCC
Confidence 458999999998776533 34 56799998887653 368999986
No 125
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=41.58 E-value=38 Score=37.43 Aligned_cols=56 Identities=23% Similarity=0.584 Sum_probs=32.8
Q ss_pred CcccccccccC-CC----------------Cce--ecCCCCeecHHHHHHHHHcCCCCC-CCCCcCCCCCccccccC
Q 003879 213 LSVQCPICLEY-PL----------------CPQ--ITSCGHIFCFPCILQYLLMGDEDY-KGDCFKRCPLCFVMISS 269 (789)
Q Consensus 213 e~~~CPICLe~-~~----------------~Pv--it~CGHiFC~~CIl~~l~~~~~~~-k~~~~~~CPlCr~~i~~ 269 (789)
.+..||+|+.. +. .|. ..+|||+ |..=-..|+..-.--+ .-.-..-||.|...+..
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv-~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHV-CSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccc-cchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 46789999953 11 122 4689996 5555566666432111 11124679999876643
No 126
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=38.52 E-value=20 Score=43.69 Aligned_cols=55 Identities=29% Similarity=0.579 Sum_probs=38.7
Q ss_pred cccccccccCCCCce-ecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCce
Q 003879 214 SVQCPICLEYPLCPQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 273 (789)
Q Consensus 214 ~~~CPICLe~~~~Pv-it~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~ 273 (789)
.+.||||...+..|. -..|.|+=|+.-.. |+...+ ++....||+|-..+....|.
T Consensus 306 SL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~-~lq~n~----~~pTW~CPVC~~~~~~e~l~ 361 (636)
T KOG2169|consen 306 SLNCPLSKMRMSLPARGHTCKHLQCFDALS-YLQMNE----QKPTWRCPVCQKAAPFEGLI 361 (636)
T ss_pred EecCCcccceeecCCcccccccceecchhh-hHHhcc----CCCeeeCccCCccccccchh
Confidence 588999997766665 56899999988654 344322 12356799998877766664
No 127
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.87 E-value=24 Score=42.93 Aligned_cols=50 Identities=28% Similarity=0.682 Sum_probs=38.8
Q ss_pred cccccccCCCCceecCCCC-eecHHHHHHHHHcCCCCCCCCCcCCCCCcccccc
Q 003879 216 QCPICLEYPLCPQITSCGH-IFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 268 (789)
Q Consensus 216 ~CPICLe~~~~Pvit~CGH-iFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~ 268 (789)
.|+||-.-+.-+..-.||| ..|..|.++......+ .+....||.|+..+.
T Consensus 2 ~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~~~~~---~~~~~~~~vcr~~~~ 52 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRGSCGHNEVCATCVVRLRFELNN---RKCSNECPVCRREVE 52 (669)
T ss_pred CcceeecCccccccccccccccchhhhhhhhhhccc---ccccccCccccccee
Confidence 5999999888888889999 8999999987765331 123467899988654
No 128
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=37.46 E-value=3.4 Score=38.14 Aligned_cols=47 Identities=28% Similarity=0.594 Sum_probs=17.1
Q ss_pred ccccccccCC--CCceecCC--CCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 003879 215 VQCPICLEYP--LCPQITSC--GHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 267 (789)
Q Consensus 215 ~~CPICLe~~--~~Pvit~C--GHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i 267 (789)
..|+||...+ .++....| ||+| .+|.+.++....- ..+.|++|...+
T Consensus 15 E~C~~C~~~i~~~~~~~~~C~~GH~w-~RC~lT~l~i~~~-----~~r~C~~C~~~~ 65 (99)
T PF12660_consen 15 EKCPICGAPIPFDDLDEAQCENGHVW-PRCALTFLPIQTP-----GVRVCPVCGRRA 65 (99)
T ss_dssp --------------SSEEE-TTS-EE-EB-SSS-SBS-SS------EEE-TTT--EE
T ss_pred ccccccccccccCCcCEeECCCCCEE-eeeeeeeeeeccC-----CeeEcCCCCCEE
Confidence 5799999753 45566667 8986 5677777665432 348899997643
No 129
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=36.32 E-value=19 Score=43.88 Aligned_cols=55 Identities=29% Similarity=0.469 Sum_probs=35.4
Q ss_pred CCCcccccccccCCCCce----------ecCCCCee--------------------cHHHHHHHHHcCCCC-CCCCCcCC
Q 003879 211 NPLSVQCPICLEYPLCPQ----------ITSCGHIF--------------------CFPCILQYLLMGDED-YKGDCFKR 259 (789)
Q Consensus 211 ~~e~~~CPICLe~~~~Pv----------it~CGHiF--------------------C~~CIl~~l~~~~~~-~k~~~~~~ 259 (789)
.++...|+-|+.++.+|- .|.||-.| |-.|...|..-.... |.+ ...
T Consensus 98 ~pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQ--p~a 175 (750)
T COG0068 98 PPDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQ--PIA 175 (750)
T ss_pred CCchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccc--ccc
Confidence 456678999998765542 47788776 888888776533221 222 357
Q ss_pred CCCccccc
Q 003879 260 CPLCFVMI 267 (789)
Q Consensus 260 CPlCr~~i 267 (789)
||.|.-.+
T Consensus 176 Cp~CGP~~ 183 (750)
T COG0068 176 CPKCGPHL 183 (750)
T ss_pred CcccCCCe
Confidence 88886543
No 130
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=36.03 E-value=12 Score=42.50 Aligned_cols=48 Identities=27% Similarity=0.582 Sum_probs=0.0
Q ss_pred CcccccccccCCCCce--------------ecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCcccc
Q 003879 213 LSVQCPICLEYPLCPQ--------------ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVM 266 (789)
Q Consensus 213 e~~~CPICLe~~~~Pv--------------it~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~ 266 (789)
....||+=|..+.-|. -+.|||++-+. .|-...+. ....+.||+|+..
T Consensus 276 ~rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h---~Wg~~~~~---~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 276 GRPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYH---NWGQDSDR---DPRSRTCPLCRQV 337 (416)
T ss_dssp --------------------------------------------------------------------
T ss_pred cCCCCCcCCCccccccccccccccccCceeeccccceeeec---cccccccc---ccccccCCCcccc
Confidence 3578999886654332 46799998663 34332221 1136899999874
No 131
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=34.10 E-value=21 Score=39.41 Aligned_cols=46 Identities=30% Similarity=0.689 Sum_probs=27.6
Q ss_pred cccccccccCCCCce--------------ecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccc
Q 003879 214 SVQCPICLEYPLCPQ--------------ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFV 265 (789)
Q Consensus 214 ~~~CPICLe~~~~Pv--------------it~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~ 265 (789)
-..||+=|..+.-|. -+.|||+--+. .-+.....+...++||+|+.
T Consensus 290 RPQCPVglnTL~~P~~~~~~~~~~~QP~vYl~CGHV~G~H------~WG~~e~~g~~~r~CPmC~~ 349 (429)
T KOG3842|consen 290 RPQCPVGLNTLAFPSKRRKRVVDEKQPWVYLNCGHVHGYH------NWGVRENTGQRERECPMCRV 349 (429)
T ss_pred CCCCCcccceeecccccccccccccCCeEEEecccccccc------ccccccccCcccCcCCeeee
Confidence 467999887654332 36799975331 11222223334689999976
No 133
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=33.53 E-value=52 Score=34.37 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003879 623 FIDEIRKREKQRKQLANKERKEKMKAEAA 651 (789)
Q Consensus 623 F~~EL~kRrkrRk~K~r~Eek~r~raE~~ 651 (789)
..+|+++||+++..++..|+|...++|.+
T Consensus 166 lfae~erkRk~~e~r~~~eRkr~re~eIe 194 (250)
T KOG1150|consen 166 LFAELERKRKELEARANEERKRQREEEIE 194 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 44689999999998888887754444433
No 134
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.25 E-value=9.7 Score=45.74 Aligned_cols=65 Identities=22% Similarity=0.497 Sum_probs=42.1
Q ss_pred CCCcCccCCccceeeeecCCCCcccccccccCCCC----ceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 003879 192 SMDPDKMLQWEDIICVRYSNPLSVQCPICLEYPLC----PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 267 (789)
Q Consensus 192 ~~dpd~~l~w~~v~qv~~~~~e~~~CPICLe~~~~----Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i 267 (789)
..+..+..+|.| ...|-.|...|.- -....||-+||..|....+....-...+ -.+.|-.|.+.+
T Consensus 153 mf~~~~~pdW~D----------~~~C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s~~lP~~Gi~~-~VRVCd~C~E~l 221 (634)
T KOG1818|consen 153 MFDAETAPDWID----------SEECLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKSLTLPKLGIEK-PVRVCDSCYELL 221 (634)
T ss_pred hhcccCCccccc----------ccccceeeeeeeeccccccccccchhhccCccccccCcccccccc-cceehhhhHHHh
Confidence 345566677733 4679999877642 2256899999999988877654321111 247788886644
No 135
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=32.29 E-value=6.5 Score=42.91 Aligned_cols=44 Identities=23% Similarity=0.572 Sum_probs=22.3
Q ss_pred cccccccccCCCCceecCC---C--CeecHHHHHHHHHcCCCCCCCCCcCCCCCcccc
Q 003879 214 SVQCPICLEYPLCPQITSC---G--HIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVM 266 (789)
Q Consensus 214 ~~~CPICLe~~~~Pvit~C---G--HiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~ 266 (789)
...||||-..|...++..= | |.+|.-|-..|-.. -..||.|...
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~---------R~~Cp~Cg~~ 220 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFV---------RIKCPYCGNT 220 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE-----------TTS-TTT---
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeec---------CCCCcCCCCC
Confidence 3689999999887776543 4 56899998887553 3689999763
No 136
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=30.89 E-value=13 Score=31.35 Aligned_cols=33 Identities=24% Similarity=0.501 Sum_probs=16.8
Q ss_pred CcccccccccCCCCc--e--ecCCCCeecHHHHHHHH
Q 003879 213 LSVQCPICLEYPLCP--Q--ITSCGHIFCFPCILQYL 245 (789)
Q Consensus 213 e~~~CPICLe~~~~P--v--it~CGHiFC~~CIl~~l 245 (789)
+...|.+|...|.-- + --.||++||..|.....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 457899999877422 1 35799999999975433
No 137
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=30.71 E-value=43 Score=38.65 Aligned_cols=54 Identities=30% Similarity=0.400 Sum_probs=46.1
Q ss_pred cccccccCCCCcee-cCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCceeEEee
Q 003879 216 QCPICLEYPLCPQI-TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHIE 278 (789)
Q Consensus 216 ~CPICLe~~~~Pvi-t~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~~ 278 (789)
.|.|--+.|..|++ ...||+|=.+-|.+|+.. ..+||+-..++...+|.+|...
T Consensus 2 ~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e---------~G~DPIt~~pLs~eelV~Ik~~ 56 (506)
T KOG0289|consen 2 VCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE---------TGKDPITNEPLSIEELVEIKVP 56 (506)
T ss_pred eecccCCCCCCccccccccchHHHHHHHHHHHH---------cCCCCCCCCcCCHHHeeecccc
Confidence 59999999999996 468999999999999985 4689999999988888775443
No 138
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.21 E-value=36 Score=39.52 Aligned_cols=31 Identities=26% Similarity=0.638 Sum_probs=20.7
Q ss_pred ccccccccC---CCCceecCCCCeecHHHHHHHH
Q 003879 215 VQCPICLEY---PLCPQITSCGHIFCFPCILQYL 245 (789)
Q Consensus 215 ~~CPICLe~---~~~Pvit~CGHiFC~~CIl~~l 245 (789)
..|+.+... ...++.-.|||.||+.|...|-
T Consensus 164 ~~C~~av~~~~~~~~~v~C~~g~~FC~~C~~~~H 197 (444)
T KOG1815|consen 164 PGCGLAVKFGSLESVEVDCGCGHEFCFACGEESH 197 (444)
T ss_pred CCCCceeeccCCCccceeCCCCchhHhhcccccc
Confidence 456544442 3455677899999999966553
No 139
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=29.76 E-value=16 Score=40.60 Aligned_cols=43 Identities=21% Similarity=0.586 Sum_probs=31.9
Q ss_pred cccccccccCCCCceec---CCC--CeecHHHHHHHHHcCCCCCCCCCcCCCCCccc
Q 003879 214 SVQCPICLEYPLCPQIT---SCG--HIFCFPCILQYLLMGDEDYKGDCFKRCPLCFV 265 (789)
Q Consensus 214 ~~~CPICLe~~~~Pvit---~CG--HiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~ 265 (789)
...||||-..|+..++. .=| |.+|..|-..|-.. -.+||.|..
T Consensus 187 ~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~---------R~~C~~Cg~ 234 (309)
T PRK03564 187 RQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVV---------RVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCcchhheeeccCCCCceEEEcCCCCCccccc---------CccCCCCCC
Confidence 57899999998877542 334 45789998887653 368999986
No 140
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.02 E-value=35 Score=29.92 Aligned_cols=37 Identities=22% Similarity=0.431 Sum_probs=26.2
Q ss_pred ceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCcee
Q 003879 227 PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 274 (789)
Q Consensus 227 Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 274 (789)
.++..=-|.||..|....+. ..||.|...+....+++
T Consensus 22 A~ICtfEcTFCadCae~~l~-----------g~CPnCGGelv~RP~RP 58 (84)
T COG3813 22 ARICTFECTFCADCAENRLH-----------GLCPNCGGELVARPIRP 58 (84)
T ss_pred eeEEEEeeehhHhHHHHhhc-----------CcCCCCCchhhcCcCCh
Confidence 34434457899999887665 57999988776555543
No 141
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=29.01 E-value=18 Score=41.06 Aligned_cols=56 Identities=20% Similarity=0.449 Sum_probs=0.0
Q ss_pred cccccccccC--CC---------------Cce--ecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccC
Q 003879 214 SVQCPICLEY--PL---------------CPQ--ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 269 (789)
Q Consensus 214 ~~~CPICLe~--~~---------------~Pv--it~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~ 269 (789)
...||+|+.. ++ .|. ..+|||+--.....-|-...--.+...-...||.|-..+..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 6789999953 11 122 45899975555555454432111111123589999887753
No 142
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=28.30 E-value=35 Score=27.50 Aligned_cols=33 Identities=24% Similarity=0.503 Sum_probs=23.5
Q ss_pred ccccccccCCCC----ceecCCCCeecHHHHHHHHHc
Q 003879 215 VQCPICLEYPLC----PQITSCGHIFCFPCILQYLLM 247 (789)
Q Consensus 215 ~~CPICLe~~~~----Pvit~CGHiFC~~CIl~~l~~ 247 (789)
..|.+|...|.. .....||++||..|.......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~~ 39 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIPL 39 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeeec
Confidence 468899865432 225689999999998766553
No 143
>KOG3451 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.83 E-value=85 Score=27.22 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=32.4
Q ss_pred cCCCceEEEEEecCCC-CCChhhHHhhHHHHHHHHHHH
Q 003879 598 FSLTTTFQLCEIDLTE-ALPPDALSPFIDEIRKREKQR 634 (789)
Q Consensus 598 LPlgce~~f~E~Dl~~-vVs~EtL~~F~~EL~kRrkrR 634 (789)
.|+|-.|-+=|+|=+. +|.+++++.-+.||++++.++
T Consensus 27 m~~~skfii~eLDdthLfV~p~~vemvk~~le~~le~n 64 (71)
T KOG3451|consen 27 MQLGSKFIIEELDDTHLFVNPSIVEMVKNELERILENN 64 (71)
T ss_pred CCCCCCeeEEEeccceeeecHHHHHHHHHHHHHHHHhc
Confidence 4899999999999988 688999999999999887543
No 144
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.61 E-value=36 Score=33.04 Aligned_cols=38 Identities=24% Similarity=0.321 Sum_probs=21.7
Q ss_pred cCCccceeeeecCCCCcccccccccCCCCceecCCCCeecHH
Q 003879 198 MLQWEDIICVRYSNPLSVQCPICLEYPLCPQITSCGHIFCFP 239 (789)
Q Consensus 198 ~l~w~~v~qv~~~~~e~~~CPICLe~~~~Pvit~CGHiFC~~ 239 (789)
-++|+|-+-+.+ ...-=||.+.-..-....|||.||.+
T Consensus 45 rv~~~dpillpv----g~hlfi~qs~~~rv~rcecghsf~d~ 82 (165)
T COG4647 45 RVDWDDPILLPV----GDHLFICQSAQKRVIRCECGHSFGDY 82 (165)
T ss_pred hcccCCCeeeec----CCcEEEEecccccEEEEeccccccCh
Confidence 356766443222 12223666655554467899999975
No 145
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.44 E-value=84 Score=38.76 Aligned_cols=16 Identities=13% Similarity=0.221 Sum_probs=10.5
Q ss_pred hhHHhhHHHHHHHHHH
Q 003879 618 DALSPFIDEIRKREKQ 633 (789)
Q Consensus 618 EtL~~F~~EL~kRrkr 633 (789)
|-|+.=..||+|||+.
T Consensus 320 eNy~kGqaELerRRq~ 335 (1118)
T KOG1029|consen 320 ENYEKGQAELERRRQA 335 (1118)
T ss_pred HhHhhhhHHHHHHHHH
Confidence 4455556688888764
No 146
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=27.12 E-value=52 Score=40.31 Aligned_cols=35 Identities=29% Similarity=0.639 Sum_probs=24.1
Q ss_pred ccccccccCCC--CceecCCCCeecHHHHHHHHHcCC
Q 003879 215 VQCPICLEYPL--CPQITSCGHIFCFPCILQYLLMGD 249 (789)
Q Consensus 215 ~~CPICLe~~~--~Pvit~CGHiFC~~CIl~~l~~~~ 249 (789)
+.|.||--... .-+...|||+..-.|...|+..++
T Consensus 1029 ~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~gd 1065 (1081)
T KOG0309|consen 1029 FQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTGD 1065 (1081)
T ss_pred eeeeeEeeEeeccchhhccccccccHHHHHHHHhcCC
Confidence 44555543221 123467999999999999999865
No 147
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.06 E-value=12 Score=40.59 Aligned_cols=44 Identities=36% Similarity=0.684 Sum_probs=34.1
Q ss_pred ccccccccCC------CCceecC--------CCCeecHHHHHHHHHcCCCCCCCCCcCCCCCcccc
Q 003879 215 VQCPICLEYP------LCPQITS--------CGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVM 266 (789)
Q Consensus 215 ~~CPICLe~~------~~Pvit~--------CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~ 266 (789)
..|.||.... ..|++.. |||..|..|+...+... ...||.|+..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~--------~~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQA--------GIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHh--------hhcCCcccce
Confidence 5699998543 3566666 99999999999988752 3789999763
No 148
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=26.84 E-value=28 Score=39.59 Aligned_cols=33 Identities=27% Similarity=0.821 Sum_probs=23.9
Q ss_pred ccccccccc-CCCCce-ecCCCCeecHHHHHHHHH
Q 003879 214 SVQCPICLE-YPLCPQ-ITSCGHIFCFPCILQYLL 246 (789)
Q Consensus 214 ~~~CPICLe-~~~~Pv-it~CGHiFC~~CIl~~l~ 246 (789)
...||||+- ++.+-- ...|.-..|-.|+..+-.
T Consensus 74 ~~ecpicflyyps~~n~~rcC~~~Ic~ecf~~~~~ 108 (482)
T KOG2789|consen 74 KTECPICFLYYPSAKNLVRCCSETICGECFAPFGC 108 (482)
T ss_pred cccCceeeeecccccchhhhhccchhhhheecccC
Confidence 468999994 555333 456788999999887644
No 149
>PRK04023 DNA polymerase II large subunit; Validated
Probab=26.75 E-value=42 Score=42.49 Aligned_cols=55 Identities=18% Similarity=0.349 Sum_probs=38.7
Q ss_pred CcccccccccCCCCceecCCCC-----eecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCceeEEee
Q 003879 213 LSVQCPICLEYPLCPQITSCGH-----IFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHIE 278 (789)
Q Consensus 213 e~~~CPICLe~~~~Pvit~CGH-----iFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~~ 278 (789)
....||-|-......++..||. .||..|-.. . ....||.|...+.....+.+-+.
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~~--~---------~~y~CPKCG~El~~~s~~~i~l~ 684 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGIE--V---------EEDECEKCGREPTPYSKRKIDLK 684 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCCCCcceeCccccCc--C---------CCCcCCCCCCCCCccceEEecHH
Confidence 4578999998766666778994 599999211 1 13579999988877666665554
No 150
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=26.44 E-value=55 Score=27.41 Aligned_cols=45 Identities=27% Similarity=0.470 Sum_probs=28.5
Q ss_pred ccccccccC-CC-C--ceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCC
Q 003879 215 VQCPICLEY-PL-C--PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSK 270 (789)
Q Consensus 215 ~~CPICLe~-~~-~--Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~ 270 (789)
..|-.|-.. +. . +.+-.=-..||..|....+. ..||.|...+..+
T Consensus 6 pnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~-----------~~CPNCgGelv~R 54 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYICSFECTFCADCAETMLN-----------GVCPNCGGELVRR 54 (57)
T ss_pred CCccccCCCCCCCCCcceEEeEeCcccHHHHHHHhc-----------CcCcCCCCccccC
Confidence 346666643 22 2 23322235799999998875 5799998766543
No 151
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=26.05 E-value=33 Score=35.99 Aligned_cols=44 Identities=25% Similarity=0.452 Sum_probs=34.8
Q ss_pred cccccccccCCCCce-ecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCcccc
Q 003879 214 SVQCPICLEYPLCPQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVM 266 (789)
Q Consensus 214 ~~~CPICLe~~~~Pv-it~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~ 266 (789)
-..|.+|.......+ .-.||-.+..+|+..|+.. ...||.|..-
T Consensus 181 lk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~---------~~~cphc~d~ 225 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR---------RDICPHCGDL 225 (235)
T ss_pred HHHHhHhHHHhheeeccCcccchhhhHHHHHHhcc---------cCcCCchhcc
Confidence 368999999876555 6678888889999999985 3589999653
No 152
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=25.78 E-value=1.1e+02 Score=35.09 Aligned_cols=57 Identities=18% Similarity=0.259 Sum_probs=47.5
Q ss_pred cccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCceeEEeec
Q 003879 214 SVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHIEN 279 (789)
Q Consensus 214 ~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~~~ 279 (789)
...|.+-+-++..|+++.-|-+|=+.-|+.||+. ..+-|+-...+..++|..+.+..
T Consensus 40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk---------~g~nP~tG~kl~~~dLIkL~F~K 96 (518)
T KOG0883|consen 40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK---------HGTNPITGQKLDGKDLIKLKFHK 96 (518)
T ss_pred hhhceeccccccCcccccCCcEEeeehhhHHHHH---------cCCCCCCCCccccccceeeeecc
Confidence 4679999999999999999999999999999984 35667778888888887766643
No 153
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=25.38 E-value=30 Score=40.17 Aligned_cols=31 Identities=29% Similarity=0.527 Sum_probs=22.4
Q ss_pred CCCCcccccccccCCCCce----ecCCCCeecHHH
Q 003879 210 SNPLSVQCPICLEYPLCPQ----ITSCGHIFCFPC 240 (789)
Q Consensus 210 ~~~e~~~CPICLe~~~~Pv----it~CGHiFC~~C 240 (789)
+..+...|-.|..+|.+-+ ...||-+||..|
T Consensus 897 pd~~a~~cmacq~pf~afrrrhhcrncggifcg~c 931 (990)
T KOG1819|consen 897 PDEDAEQCMACQMPFNAFRRRHHCRNCGGIFCGKC 931 (990)
T ss_pred CCCcchhhhhccCcHHHHHHhhhhcccCceeeccc
Confidence 3445567888887765433 568999999988
No 154
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=24.65 E-value=26 Score=42.00 Aligned_cols=40 Identities=23% Similarity=0.545 Sum_probs=25.9
Q ss_pred Cccccccccc-CCCCce-------ecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCcc
Q 003879 213 LSVQCPICLE-YPLCPQ-------ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCF 264 (789)
Q Consensus 213 e~~~CPICLe-~~~~Pv-------it~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr 264 (789)
..+.|.||.. .+.-|. ...||++|...|+.+ +...||.|-
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r------------~s~~CPrC~ 557 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR------------KSPCCPRCE 557 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc------------cCCCCCchH
Confidence 4677888863 222232 346999999988654 235599993
No 155
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=24.51 E-value=30 Score=39.92 Aligned_cols=32 Identities=22% Similarity=0.503 Sum_probs=24.0
Q ss_pred CCCcccccccccCCCCce----ecCCCCeecHHHHH
Q 003879 211 NPLSVQCPICLEYPLCPQ----ITSCGHIFCFPCIL 242 (789)
Q Consensus 211 ~~e~~~CPICLe~~~~Pv----it~CGHiFC~~CIl 242 (789)
..+...||+|-..|.-.+ .--||-+.|..|..
T Consensus 177 Ds~V~~CP~Ca~~F~l~rRrHHCRLCG~VmC~~C~k 212 (505)
T KOG1842|consen 177 DSSVQFCPECANSFGLTRRRHHCRLCGRVMCRDCSK 212 (505)
T ss_pred CCcccccccccchhhhHHHhhhhhhcchHHHHHHHH
Confidence 344678999999886443 34699999999954
No 156
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=23.75 E-value=38 Score=27.50 Aligned_cols=12 Identities=33% Similarity=0.531 Sum_probs=8.8
Q ss_pred cccccccccCCC
Q 003879 214 SVQCPICLEYPL 225 (789)
Q Consensus 214 ~~~CPICLe~~~ 225 (789)
.+.||.|...+.
T Consensus 2 ~f~CP~C~~~~~ 13 (54)
T PF05605_consen 2 SFTCPYCGKGFS 13 (54)
T ss_pred CcCCCCCCCccC
Confidence 578999988443
No 157
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=22.83 E-value=47 Score=41.10 Aligned_cols=56 Identities=29% Similarity=0.397 Sum_probs=34.1
Q ss_pred CCCcccccccccCCCCce----------ecCCCCee--------------------cHHHHHHHHHcCCCCCCCCCcCCC
Q 003879 211 NPLSVQCPICLEYPLCPQ----------ITSCGHIF--------------------CFPCILQYLLMGDEDYKGDCFKRC 260 (789)
Q Consensus 211 ~~e~~~CPICLe~~~~Pv----------it~CGHiF--------------------C~~CIl~~l~~~~~~~k~~~~~~C 260 (789)
.++-..|+-|+.++.+|. .|.||-.| |..|...|....... -......|
T Consensus 65 ppD~a~C~~Cl~E~~dp~~Rry~YpF~nCt~CGPr~~i~~~lpydr~~t~m~~f~~C~~C~~ey~~p~~rr-~h~~~~~C 143 (711)
T TIGR00143 65 PADVATCSDCLEEMLDKNDRRYLYPFISCTHCGPRFTIIEALPYDRENTSMADFPLCPDCAKEYKDPLDRR-FHAQPIAC 143 (711)
T ss_pred CCchhhHHHHHHHhcCCCcccccCCcccccCCCCCeEEeecCCCCCCCcCCCCCcCCHHHHHHhcCCcccc-CCCCCccC
Confidence 456678999997766543 46788665 777877765432211 11123567
Q ss_pred CCccccc
Q 003879 261 PLCFVMI 267 (789)
Q Consensus 261 PlCr~~i 267 (789)
|.|.-.+
T Consensus 144 ~~Cgp~l 150 (711)
T TIGR00143 144 PRCGPQL 150 (711)
T ss_pred CCCCcEE
Confidence 8886543
No 158
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=22.09 E-value=49 Score=27.16 Aligned_cols=26 Identities=27% Similarity=0.853 Sum_probs=14.3
Q ss_pred cCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCcc
Q 003879 230 TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCF 264 (789)
Q Consensus 230 t~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr 264 (789)
..|+++||+.|=+ |+.. ....||-|.
T Consensus 25 ~~C~~~FC~dCD~-fiHE--------~LH~CPGC~ 50 (51)
T PF07975_consen 25 PKCKNHFCIDCDV-FIHE--------TLHNCPGCE 50 (51)
T ss_dssp TTTT--B-HHHHH-TTTT--------TS-SSSTT-
T ss_pred CCCCCccccCcCh-hhhc--------cccCCcCCC
Confidence 4799999999943 3332 357899884
No 159
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.26 E-value=23 Score=41.11 Aligned_cols=47 Identities=32% Similarity=0.591 Sum_probs=36.2
Q ss_pred CCCCccccccc-ccCCCCceec--CCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCcccc
Q 003879 210 SNPLSVQCPIC-LEYPLCPQIT--SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVM 266 (789)
Q Consensus 210 ~~~e~~~CPIC-Le~~~~Pvit--~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~ 266 (789)
...+.+.|++| ...++...++ -|.-+||..||...+.. +.|+.|...
T Consensus 215 ~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~----------~~~~~c~~~ 264 (448)
T KOG0314|consen 215 ELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALIS----------KSMCVCGAS 264 (448)
T ss_pred cCCccccCceecchhhHHHHHhhhhhcccCCcccccccccc----------ccCCcchhh
Confidence 34578999999 7788877765 58899999999988764 566777553
No 160
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.80 E-value=12 Score=42.39 Aligned_cols=50 Identities=20% Similarity=0.372 Sum_probs=38.7
Q ss_pred cccccccccCCCCc----eecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCc
Q 003879 214 SVQCPICLEYPLCP----QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKEL 272 (789)
Q Consensus 214 ~~~CPICLe~~~~P----vit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L 272 (789)
.-+|.||...+..- -.+.|||++...||..|+.. -.+||.|+..+....+
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~---------~~kl~~~~rel~~~~~ 249 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLAT---------KRKLPSCRRELPKNGF 249 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHH---------HHHhHHHHhhhhhhhH
Confidence 35799998765432 35789999999999999986 3689999988765443
Done!