Query 003879
Match_columns 789
No_of_seqs 375 out of 1645
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 07:00:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003879.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003879hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ng2_A RNF4, snurf, ring finge 99.2 9.1E-12 3.1E-16 104.4 3.3 58 211-277 7-71 (71)
2 1t1h_A Gspef-atpub14, armadill 99.2 2.1E-11 7.1E-16 104.4 5.5 55 212-274 6-60 (78)
3 2ysl_A Tripartite motif-contai 99.1 3.4E-11 1.2E-15 101.5 5.3 55 212-272 18-72 (73)
4 1g25_A CDK-activating kinase a 99.1 2.8E-11 9.4E-16 100.3 4.5 57 213-277 2-63 (65)
5 2ecy_A TNF receptor-associated 99.1 3.2E-11 1.1E-15 100.1 4.7 53 212-272 13-65 (66)
6 2xeu_A Ring finger protein 4; 99.1 1.9E-11 6.5E-16 100.1 3.0 56 213-277 2-64 (64)
7 3lrq_A E3 ubiquitin-protein li 99.1 2.2E-11 7.6E-16 109.8 3.5 54 213-274 21-75 (100)
8 2djb_A Polycomb group ring fin 99.1 7E-11 2.4E-15 99.9 5.5 53 213-274 14-67 (72)
9 2kr4_A Ubiquitin conjugation f 99.1 7.4E-11 2.5E-15 103.6 5.6 55 211-274 11-65 (85)
10 3ztg_A E3 ubiquitin-protein li 99.1 9.4E-11 3.2E-15 103.5 6.1 55 212-273 11-67 (92)
11 2yur_A Retinoblastoma-binding 99.1 8.7E-11 3E-15 100.0 5.0 50 213-269 14-64 (74)
12 2ct2_A Tripartite motif protei 99.1 1.1E-10 3.6E-15 101.8 5.5 55 213-273 14-72 (88)
13 2kre_A Ubiquitin conjugation f 99.1 8.7E-11 3E-15 106.4 5.0 55 211-274 26-80 (100)
14 3fl2_A E3 ubiquitin-protein li 99.0 8.1E-11 2.8E-15 109.9 4.4 49 213-269 51-99 (124)
15 1jm7_A BRCA1, breast cancer ty 99.0 2.7E-11 9.3E-16 110.5 1.0 55 213-273 20-74 (112)
16 2csy_A Zinc finger protein 183 99.0 1.8E-10 6.3E-15 99.4 6.0 47 213-268 14-60 (81)
17 2ecw_A Tripartite motif-contai 99.0 1.6E-10 5.6E-15 99.6 5.6 59 213-274 18-76 (85)
18 2d8t_A Dactylidin, ring finger 99.0 4.3E-11 1.5E-15 100.9 1.7 51 213-272 14-64 (71)
19 1wgm_A Ubiquitin conjugation f 99.0 1.7E-10 5.8E-15 104.1 5.5 55 211-274 19-74 (98)
20 4ayc_A E3 ubiquitin-protein li 99.0 7.5E-11 2.6E-15 112.4 3.2 47 213-268 52-98 (138)
21 2ysj_A Tripartite motif-contai 99.0 2.1E-10 7.2E-15 94.2 5.4 46 212-263 18-63 (63)
22 2egp_A Tripartite motif-contai 99.0 4.5E-11 1.5E-15 102.2 1.4 61 212-274 10-70 (79)
23 2ecv_A Tripartite motif-contai 99.0 1.9E-10 6.4E-15 99.2 4.6 60 212-274 17-76 (85)
24 2y43_A E3 ubiquitin-protein li 99.0 1E-10 3.4E-15 104.9 2.6 53 213-274 21-74 (99)
25 2c2l_A CHIP, carboxy terminus 99.0 2.3E-10 7.9E-15 119.6 5.2 56 211-274 205-260 (281)
26 2ea6_A Ring finger protein 4; 99.0 2.3E-10 8E-15 95.0 3.6 49 212-269 13-68 (69)
27 1z6u_A NP95-like ring finger p 99.0 3.9E-10 1.4E-14 109.2 5.3 50 213-270 77-126 (150)
28 2ckl_A Polycomb group ring fin 98.9 5E-10 1.7E-14 102.0 4.8 49 213-270 14-63 (108)
29 2yu4_A E3 SUMO-protein ligase 98.9 5.9E-10 2E-14 99.5 5.1 60 212-274 5-68 (94)
30 3hct_A TNF receptor-associated 98.9 5.7E-10 1.9E-14 103.4 4.9 55 212-274 16-70 (118)
31 2ecj_A Tripartite motif-contai 98.9 6.2E-10 2.1E-14 89.4 4.3 45 213-263 14-58 (58)
32 2f42_A STIP1 homology and U-bo 98.9 7.1E-10 2.4E-14 110.4 5.4 56 211-274 103-158 (179)
33 2ckl_B Ubiquitin ligase protei 98.9 2.9E-10 1E-14 111.2 2.6 48 213-268 53-101 (165)
34 2ect_A Ring finger protein 126 98.9 6.2E-10 2.1E-14 95.2 4.1 53 213-274 14-69 (78)
35 1jm7_B BARD1, BRCA1-associated 98.9 9.8E-11 3.4E-15 108.4 -1.3 68 195-273 3-71 (117)
36 1rmd_A RAG1; V(D)J recombinati 98.9 1E-09 3.4E-14 101.1 4.5 54 213-274 22-75 (116)
37 2ecm_A Ring finger and CHY zin 98.9 1.3E-09 4.6E-14 86.7 4.4 47 213-268 4-54 (55)
38 3l11_A E3 ubiquitin-protein li 98.9 2.9E-10 1E-14 104.6 0.5 48 213-268 14-61 (115)
39 4ap4_A E3 ubiquitin ligase RNF 98.9 8.2E-10 2.8E-14 102.8 3.2 57 212-277 5-68 (133)
40 1v87_A Deltex protein 2; ring- 98.8 2.2E-09 7.6E-14 98.3 5.7 53 213-269 24-94 (114)
41 1chc_A Equine herpes virus-1 r 98.8 1.6E-09 5.5E-14 90.1 4.2 47 213-268 4-51 (68)
42 2kiz_A E3 ubiquitin-protein li 98.8 2.7E-09 9.2E-14 89.0 5.5 48 213-269 13-63 (69)
43 1e4u_A Transcriptional repress 98.8 2E-09 6.8E-14 93.2 4.4 53 212-272 9-65 (78)
44 2ecn_A Ring finger protein 141 98.8 7.9E-10 2.7E-14 92.6 1.6 50 212-271 13-62 (70)
45 1x4j_A Ring finger protein 38; 98.8 1.8E-09 6E-14 91.9 3.6 49 212-269 21-72 (75)
46 2l0b_A E3 ubiquitin-protein li 98.8 2E-09 6.7E-14 95.4 3.9 48 213-269 39-89 (91)
47 3htk_C E3 SUMO-protein ligase 98.8 2E-09 6.9E-14 112.4 4.6 57 211-274 178-237 (267)
48 3knv_A TNF receptor-associated 98.8 1.2E-09 3.9E-14 104.9 2.1 52 211-270 28-79 (141)
49 4ap4_A E3 ubiquitin ligase RNF 98.8 2E-09 6.8E-14 100.2 3.5 58 211-277 69-133 (133)
50 2ep4_A Ring finger protein 24; 98.8 3.3E-09 1.1E-13 89.8 4.4 48 213-269 14-64 (74)
51 1iym_A EL5; ring-H2 finger, ub 98.8 2.6E-09 8.8E-14 85.1 3.3 46 213-267 4-53 (55)
52 3hcs_A TNF receptor-associated 98.7 6.1E-09 2.1E-13 102.2 4.9 56 211-274 15-70 (170)
53 1bor_A Transcription factor PM 98.7 3.5E-09 1.2E-13 85.5 1.5 45 213-269 5-49 (56)
54 2y1n_A E3 ubiquitin-protein li 98.7 7.2E-09 2.4E-13 114.3 3.7 50 214-271 332-381 (389)
55 2bay_A PRE-mRNA splicing facto 98.7 1.2E-08 4.1E-13 84.2 3.7 55 214-277 3-58 (61)
56 2vje_A E3 ubiquitin-protein li 98.6 1.7E-08 5.9E-13 83.8 4.0 48 212-268 6-56 (64)
57 2ecl_A Ring-box protein 2; RNF 98.6 2.5E-08 8.7E-13 86.4 3.8 48 213-269 14-76 (81)
58 2ecg_A Baculoviral IAP repeat- 98.5 2.7E-08 9.2E-13 84.9 3.1 44 213-269 24-68 (75)
59 4ic3_A E3 ubiquitin-protein li 98.5 1.8E-08 6.3E-13 85.8 2.0 44 213-269 23-67 (74)
60 2vje_B MDM4 protein; proto-onc 98.5 4.3E-08 1.5E-12 81.1 3.6 46 214-268 7-55 (63)
61 3dpl_R Ring-box protein 1; ubi 98.4 2.1E-07 7.2E-12 85.1 5.1 47 213-268 36-100 (106)
62 1wim_A KIAA0161 protein; ring 98.4 3.3E-08 1.1E-12 87.8 -0.7 59 213-272 4-69 (94)
63 2ea5_A Cell growth regulator w 98.3 3.2E-07 1.1E-11 77.1 4.2 44 213-269 14-58 (68)
64 2yho_A E3 ubiquitin-protein li 98.3 1.6E-07 5.4E-12 81.3 1.7 44 213-269 17-61 (79)
65 3t6p_A Baculoviral IAP repeat- 98.2 3.9E-07 1.3E-11 99.5 1.7 43 213-268 294-337 (345)
66 4a0k_B E3 ubiquitin-protein li 98.1 5.7E-07 2E-11 83.6 1.0 47 213-268 47-111 (117)
67 2d8s_A Cellular modulator of i 97.9 6.5E-06 2.2E-10 71.4 4.5 51 212-269 13-70 (80)
68 3vk6_A E3 ubiquitin-protein li 97.6 4.5E-05 1.5E-09 68.4 4.2 45 216-268 3-48 (101)
69 2ct0_A Non-SMC element 1 homol 97.4 0.00014 4.8E-09 62.2 5.1 48 214-268 15-63 (74)
70 3k1l_B Fancl; UBC, ring, RWD, 96.9 0.00022 7.6E-09 77.1 1.2 56 213-268 307-372 (381)
71 1vyx_A ORF K3, K3RING; zinc-bi 96.9 0.00071 2.4E-08 55.4 3.9 49 213-268 5-58 (60)
72 2jun_A Midline-1; B-BOX, TRIM, 94.5 0.019 6.5E-07 50.9 3.1 32 213-244 2-36 (101)
73 3nw0_A Non-structural maintena 93.5 0.059 2E-06 55.7 4.9 48 214-268 180-228 (238)
74 3m62_A Ubiquitin conjugation f 90.7 0.18 6.2E-06 61.2 5.0 56 210-274 887-943 (968)
75 2cs3_A Protein C14ORF4, MY039 90.5 0.14 4.8E-06 44.0 2.7 35 214-248 15-53 (93)
76 2ko5_A Ring finger protein Z; 89.2 0.18 6.1E-06 44.7 2.5 46 213-269 27-73 (99)
77 3i2d_A E3 SUMO-protein ligase 84.4 0.75 2.6E-05 50.3 4.6 53 214-273 249-304 (371)
78 4fo9_A E3 SUMO-protein ligase 81.4 1.2 4.1E-05 48.6 4.7 53 214-273 215-270 (360)
79 3mpx_A FYVE, rhogef and PH dom 66.3 1.2 4.2E-05 49.0 0.0 54 213-268 374-431 (434)
80 1z2q_A LM5-1; membrane protein 54.5 7.7 0.00026 33.3 3.0 34 210-243 17-54 (84)
81 1x4u_A Zinc finger, FYVE domai 53.2 7.4 0.00025 33.4 2.7 34 210-243 10-47 (84)
82 1joc_A EEA1, early endosomal a 53.2 4.5 0.00015 37.5 1.4 32 213-244 68-103 (125)
83 2yw8_A RUN and FYVE domain-con 49.5 7.4 0.00025 33.2 2.1 33 211-243 16-52 (82)
84 3t7l_A Zinc finger FYVE domain 44.9 7.4 0.00025 33.9 1.4 32 213-244 19-54 (90)
85 1wfk_A Zinc finger, FYVE domai 44.7 8.8 0.0003 33.4 1.8 31 213-243 8-42 (88)
86 1y02_A CARP2, FYVE-ring finger 42.2 9.1 0.00031 35.4 1.6 31 213-243 18-52 (120)
87 1dvp_A HRS, hepatocyte growth 41.8 8.1 0.00028 38.9 1.3 30 214-243 161-194 (220)
88 3zyq_A Hepatocyte growth facto 41.0 14 0.00047 37.5 2.9 30 214-243 164-197 (226)
89 1vfy_A Phosphatidylinositol-3- 35.5 18 0.00062 30.1 2.2 28 215-242 12-43 (73)
90 1wd2_A Ariadne-1 protein homol 33.6 5 0.00017 32.5 -1.5 32 215-246 7-46 (60)
91 1z60_A TFIIH basal transcripti 31.3 21 0.00071 28.9 1.9 40 215-263 16-58 (59)
92 4g9i_A Hydrogenase maturation 30.8 21 0.00072 42.7 2.6 55 211-267 103-188 (772)
93 3mjh_B Early endosome antigen 30.4 10 0.00034 27.5 -0.1 17 212-228 3-19 (34)
94 3ttc_A HYPF, transcriptional r 30.3 21 0.00073 41.9 2.5 56 210-267 13-99 (657)
95 2ct7_A Ring finger protein 31; 27.6 31 0.0011 29.5 2.5 14 231-244 48-61 (86)
96 2rgt_A Fusion of LIM/homeobox 26.2 63 0.0021 30.7 4.6 49 212-271 31-79 (169)
97 2fiy_A Protein FDHE homolog; F 26.0 5.3 0.00018 42.7 -3.3 45 213-266 181-231 (309)
98 3vth_A Hydrogenase maturation 25.8 25 0.00085 42.1 2.0 55 211-267 108-193 (761)
99 1m3v_A FLIN4, fusion of the LI 25.2 37 0.0013 30.6 2.7 49 214-271 32-83 (122)
100 1wil_A KIAA1045 protein; ring 24.9 75 0.0026 27.7 4.2 51 213-263 14-73 (89)
101 2lri_C Autoimmune regulator; Z 21.4 76 0.0026 25.9 3.6 48 214-266 12-59 (66)
102 2d8v_A Zinc finger FYVE domain 21.3 45 0.0015 27.7 2.1 31 214-245 8-39 (67)
103 3c5k_A HD6, histone deacetylas 20.3 38 0.0013 30.6 1.6 25 214-238 24-48 (109)
No 1
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.17 E-value=9.1e-12 Score=104.41 Aligned_cols=58 Identities=34% Similarity=0.642 Sum_probs=50.2
Q ss_pred CCCcccccccccCCCCc-------eecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCceeEEe
Q 003879 211 NPLSVQCPICLEYPLCP-------QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHI 277 (789)
Q Consensus 211 ~~e~~~CPICLe~~~~P-------vit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~ 277 (789)
..+...|+||++.+..| ++++|||+||..||..|+.. ...||+||..+...+++++++
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP~Cr~~~~~~~~~~~~l 71 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCPTCRKKINHKRYHPIYI 71 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH---------CSBCTTTCCBCCCCSCCCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc---------CCCCCCCCCccChhheeeccC
Confidence 34578999999998877 88999999999999999985 368999999999988887654
No 2
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.16 E-value=2.1e-11 Score=104.43 Aligned_cols=55 Identities=29% Similarity=0.411 Sum_probs=48.2
Q ss_pred CCcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCcee
Q 003879 212 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 274 (789)
Q Consensus 212 ~e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 274 (789)
++.+.||||++.+.+|++++|||+||..||..|+.. ....||+|+..+...++.+
T Consensus 6 ~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~--------~~~~CP~C~~~~~~~~l~~ 60 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDA--------GHKTCPKSQETLLHAGLTP 60 (78)
T ss_dssp SSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTT--------TCCBCTTTCCBCSSCCCEE
T ss_pred cccCCCCCccccccCCEEcCCCCeecHHHHHHHHHH--------CcCCCCCCcCCCChhhCcc
Confidence 467899999999999999999999999999999974 1368999999988776654
No 3
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=3.4e-11 Score=101.55 Aligned_cols=55 Identities=36% Similarity=0.762 Sum_probs=46.8
Q ss_pred CCcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCc
Q 003879 212 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKEL 272 (789)
Q Consensus 212 ~e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L 272 (789)
.+.+.|+||++.+..|++++|||+||..||..|+.... ....||+||..+...++
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~------~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSC------GFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSC------SCCCCSSSCCCCCCCCC
T ss_pred ccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCC------CCCCCCCCCCcCCcccC
Confidence 45789999999999999999999999999999987321 24789999998877665
No 4
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.13 E-value=2.8e-11 Score=100.28 Aligned_cols=57 Identities=23% Similarity=0.523 Sum_probs=48.0
Q ss_pred Cccccccccc-CCCCc----eecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCceeEEe
Q 003879 213 LSVQCPICLE-YPLCP----QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHI 277 (789)
Q Consensus 213 e~~~CPICLe-~~~~P----vit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~ 277 (789)
+++.||||++ .+..| ++++|||+||..||.+|+... ...||+|+..+...+++++.+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~--------~~~CP~Cr~~~~~~~~~~~~~ 63 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG--------AGNCPECGTPLRKSNFRVQLF 63 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT--------SSSCTTTCCCCSSCCCEEECC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC--------CCcCCCCCCccccccceeecc
Confidence 4678999999 77777 468999999999999998742 368999999999999887654
No 5
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=3.2e-11 Score=100.14 Aligned_cols=53 Identities=26% Similarity=0.558 Sum_probs=46.3
Q ss_pred CCcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCc
Q 003879 212 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKEL 272 (789)
Q Consensus 212 ~e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L 272 (789)
.+.+.|+||++.+..|++++|||+||..||..|+.. ....||+|+..+..+++
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--------~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSS--------SSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTT--------SSCCCTTTCCCCCTTTC
T ss_pred CcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHh--------CcCCCCCCCcCCChhhc
Confidence 457899999999999999999999999999999962 24689999999877665
No 6
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.12 E-value=1.9e-11 Score=100.11 Aligned_cols=56 Identities=36% Similarity=0.670 Sum_probs=48.7
Q ss_pred CcccccccccCCCCc-------eecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCceeEEe
Q 003879 213 LSVQCPICLEYPLCP-------QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHI 277 (789)
Q Consensus 213 e~~~CPICLe~~~~P-------vit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~ 277 (789)
+...|+||++.+..| ++++|||+||..||..|+.. ...||+||..+...++.++++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP~Cr~~~~~~~~~~~~l 64 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCPTCRKKINHKRYHPIYI 64 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH---------CSBCTTTCCBCTTTCEEECCC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc---------CCCCCCCCccCCccceeeeeC
Confidence 357899999998776 78999999999999999985 368999999999998887654
No 7
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.11 E-value=2.2e-11 Score=109.83 Aligned_cols=54 Identities=28% Similarity=0.653 Sum_probs=47.9
Q ss_pred CcccccccccCCCCcee-cCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCcee
Q 003879 213 LSVQCPICLEYPLCPQI-TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 274 (789)
Q Consensus 213 e~~~CPICLe~~~~Pvi-t~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 274 (789)
+.+.|+||++.+..|++ ++|||+||..||..|+... ...||+||..+...++..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~--------~~~CP~Cr~~~~~~~l~~ 75 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQ--------RAQCPHCRAPLQLRELVN 75 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHT--------CSBCTTTCCBCCGGGCEE
T ss_pred CCCCCccCCccccCccccCCCCChhhHHHHHHHHHHC--------cCCCCCCCCcCCHHHhHh
Confidence 46899999999999998 9999999999999999862 268999999998777765
No 8
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=7e-11 Score=99.90 Aligned_cols=53 Identities=26% Similarity=0.689 Sum_probs=46.5
Q ss_pred CcccccccccCCCCceec-CCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCcee
Q 003879 213 LSVQCPICLEYPLCPQIT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 274 (789)
Q Consensus 213 e~~~CPICLe~~~~Pvit-~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 274 (789)
+.+.|+||++.+.+|+++ +|||+||..||..|+.. ...||+||..+...++..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~---------~~~CP~Cr~~~~~~~~~~ 67 (72)
T 2djb_A 14 PYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY---------SNRCPKCNIVVHQTQPLS 67 (72)
T ss_dssp GGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH---------CSSCTTTCCCCCSSCSCC
T ss_pred CCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc---------CCcCCCcCcccCcccccc
Confidence 468999999999999976 99999999999999975 368999999998777654
No 9
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.09 E-value=7.4e-11 Score=103.59 Aligned_cols=55 Identities=20% Similarity=0.153 Sum_probs=49.2
Q ss_pred CCCcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCcee
Q 003879 211 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 274 (789)
Q Consensus 211 ~~e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 274 (789)
.++.+.||||++.+.+|++++|||+||..||..|+.. ...||+|+..+...+|.+
T Consensus 11 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~---------~~~cP~~~~~l~~~~l~p 65 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN---------SPTDPFNRQMLTESMLEP 65 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH---------CSBCTTTCCBCCGGGCEE
T ss_pred CchheECcccCchhcCCeECCCCCEECHHHHHHHHhc---------CCCCCCCcCCCChHhcch
Confidence 3578999999999999999999999999999999984 268999999988777765
No 10
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.08 E-value=9.4e-11 Score=103.47 Aligned_cols=55 Identities=31% Similarity=0.602 Sum_probs=46.0
Q ss_pred CCcccccccccCCCCceecC-CCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccc-cCCCce
Q 003879 212 PLSVQCPICLEYPLCPQITS-CGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI-SSKELY 273 (789)
Q Consensus 212 ~e~~~CPICLe~~~~Pvit~-CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i-~~~~L~ 273 (789)
.+.+.||||++.+.+|++++ |||+||..||..|+.... ...||+|+..+ ....+.
T Consensus 11 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~-------~~~CP~Cr~~~~~~~~~~ 67 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD-------EHTCPTCHQNDVSPDALI 67 (92)
T ss_dssp CTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCT-------TCCCTTTCCSSCCTTSCE
T ss_pred CcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcC-------CCcCcCCCCcCCCccccC
Confidence 35789999999999999999 999999999999997522 36899999986 444444
No 11
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.07 E-value=8.7e-11 Score=100.01 Aligned_cols=50 Identities=30% Similarity=0.577 Sum_probs=43.3
Q ss_pred CcccccccccCCCCceecC-CCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccC
Q 003879 213 LSVQCPICLEYPLCPQITS-CGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 269 (789)
Q Consensus 213 e~~~CPICLe~~~~Pvit~-CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~ 269 (789)
+.+.|+||++.+..|++++ |||+||..||..|+.... ...||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~-------~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 14 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD-------EHTCPTCHQNDVS 64 (74)
T ss_dssp GGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSS-------SSCCSSSCCSSCC
T ss_pred CCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcC-------CCcCCCCCCcCCC
Confidence 5689999999999999999 999999999999998521 3689999997543
No 12
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.1e-10 Score=101.81 Aligned_cols=55 Identities=31% Similarity=0.673 Sum_probs=47.0
Q ss_pred CcccccccccCCCC----ceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCce
Q 003879 213 LSVQCPICLEYPLC----PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 273 (789)
Q Consensus 213 e~~~CPICLe~~~~----Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~ 273 (789)
+.+.|+||++.+.. |++++|||+||..||..|+.... ....||+||..+...++.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~------~~~~CP~Cr~~~~~~~i~ 72 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSI------NGVRCPFCSKITRITSLT 72 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCS------SCBCCTTTCCCBCCSSTT
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCC------CCcCCCCCCCcccchhHH
Confidence 46889999999988 99999999999999999998642 247899999988776654
No 13
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.06 E-value=8.7e-11 Score=106.42 Aligned_cols=55 Identities=20% Similarity=0.129 Sum_probs=49.5
Q ss_pred CCCcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCcee
Q 003879 211 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 274 (789)
Q Consensus 211 ~~e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 274 (789)
.++.+.||||++.+.+|++++|||+||..||..|+.. ...||+|+..+...+|.+
T Consensus 26 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~---------~~~cP~~~~~l~~~~L~p 80 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN---------SPTDPFNRQTLTESMLEP 80 (100)
T ss_dssp CSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS---------CSBCSSSCCBCCTTSSEE
T ss_pred CcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc---------CCCCCCCCCCCChhhceE
Confidence 3578999999999999999999999999999999973 368999999998888776
No 14
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.05 E-value=8.1e-11 Score=109.88 Aligned_cols=49 Identities=27% Similarity=0.524 Sum_probs=43.9
Q ss_pred CcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccC
Q 003879 213 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 269 (789)
Q Consensus 213 e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~ 269 (789)
+.+.||||++.+..|++++|||+||..||..|+.. ....||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--------~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRA--------QVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHT--------TCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhH--------CcCCCCCCCccCCC
Confidence 46889999999999999999999999999999984 23689999998876
No 15
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.05 E-value=2.7e-11 Score=110.45 Aligned_cols=55 Identities=40% Similarity=0.761 Sum_probs=46.4
Q ss_pred CcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCce
Q 003879 213 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 273 (789)
Q Consensus 213 e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~ 273 (789)
+.+.|+||++.+..|++++|||+||..||..|+.... ....||+|+..+...++.
T Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~------~~~~CP~Cr~~~~~~~~~ 74 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKK------GPSQCPLCKNDITKRSLQ 74 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSS------SSCCCTTTSCCCCTTTCB
T ss_pred CCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCC------CCCCCcCCCCcCCHhhcC
Confidence 4678999999999999999999999999999998532 236899999987665543
No 16
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1.8e-10 Score=99.43 Aligned_cols=47 Identities=30% Similarity=0.638 Sum_probs=42.7
Q ss_pred CcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCcccccc
Q 003879 213 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 268 (789)
Q Consensus 213 e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~ 268 (789)
+.+.|+||++.+..|++++|||+||..||..|+.. ...||+|+..+.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~---------~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA---------TPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH---------CSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC---------CCcCCCcCcccc
Confidence 46789999999999999999999999999999974 368999999885
No 17
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.04 E-value=1.6e-10 Score=99.58 Aligned_cols=59 Identities=34% Similarity=0.605 Sum_probs=49.5
Q ss_pred CcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCcee
Q 003879 213 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 274 (789)
Q Consensus 213 e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 274 (789)
+.+.|+||++.+..|++++|||+||..||..|+..... ......||+|+..+...++.+
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~---~~~~~~CP~Cr~~~~~~~~~~ 76 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRN---TDGKGNCPVCRVPYPFGNLKP 76 (85)
T ss_dssp TTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBC---TTSCBCCTTTCCCCCTTCCEE
T ss_pred cCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccC---CCCCCCCCCCCCcCCHHhCCc
Confidence 56899999999999999999999999999999986321 112478999999998877765
No 18
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=4.3e-11 Score=100.93 Aligned_cols=51 Identities=33% Similarity=0.707 Sum_probs=44.7
Q ss_pred CcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCc
Q 003879 213 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKEL 272 (789)
Q Consensus 213 e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L 272 (789)
+...|+||++.+..|++++|||+||..||..|+.. ...||+||..+...++
T Consensus 14 ~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~---------~~~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL---------GKRCALCRQEIPEDFL 64 (71)
T ss_dssp SCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC---------SSBCSSSCCBCCHHHH
T ss_pred CCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC---------CCcCcCcCchhCHhhc
Confidence 46789999999999999999999999999999874 3689999998876554
No 19
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.03 E-value=1.7e-10 Score=104.15 Aligned_cols=55 Identities=13% Similarity=-0.004 Sum_probs=49.4
Q ss_pred CCCcccccccccCCCCceecCCC-CeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCcee
Q 003879 211 NPLSVQCPICLEYPLCPQITSCG-HIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 274 (789)
Q Consensus 211 ~~e~~~CPICLe~~~~Pvit~CG-HiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 274 (789)
.++++.||||++++.+||+++|| |+||..||..|+.. ...||+|+..+...+|.+
T Consensus 19 ~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~---------~~~cP~~~~~l~~~~L~p 74 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS---------DQTDPFNRSPLTMDQIRP 74 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT---------SCBCTTTCSBCCTTTSEE
T ss_pred CcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh---------CCCCCCCCCCCChhhceE
Confidence 35789999999999999999999 99999999999974 258999999998888776
No 20
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.03 E-value=7.5e-11 Score=112.35 Aligned_cols=47 Identities=34% Similarity=0.708 Sum_probs=41.6
Q ss_pred CcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCcccccc
Q 003879 213 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 268 (789)
Q Consensus 213 e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~ 268 (789)
+++.||||++.+..|++++|||+||..||..|+.. ...||+||..+.
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR---------KIECPICRKDIK 98 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT---------CSBCTTTCCBCC
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHHc---------CCcCCCCCCcCC
Confidence 35789999999999999999999999999999874 367999998663
No 21
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=2.1e-10 Score=94.23 Aligned_cols=46 Identities=43% Similarity=0.896 Sum_probs=40.1
Q ss_pred CCcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCc
Q 003879 212 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 263 (789)
Q Consensus 212 ~e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlC 263 (789)
.+.+.||||++.+.+|++++|||+||..||.+|+.... ....||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~------~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSC------GFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCS------SCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCC------CCCcCcCC
Confidence 35789999999999999999999999999999998522 24689998
No 22
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.02 E-value=4.5e-11 Score=102.21 Aligned_cols=61 Identities=31% Similarity=0.533 Sum_probs=48.9
Q ss_pred CCcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCcee
Q 003879 212 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 274 (789)
Q Consensus 212 ~e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 274 (789)
.+.+.||||++.+..|++++|||+||..||..|+...... ......||+||..+...++.+
T Consensus 10 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~--~~~~~~CP~Cr~~~~~~~l~~ 70 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTS--MGGKSSCPVCGISYSFEHLQA 70 (79)
T ss_dssp CCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSS--CCCCCCCSSSCCCCCSSGGGT
T ss_pred ccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccC--CCCCCcCCCCCCcCCHhhCCc
Confidence 3578999999999999999999999999999998753211 012578999999988766654
No 23
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=1.9e-10 Score=99.18 Aligned_cols=60 Identities=30% Similarity=0.623 Sum_probs=48.8
Q ss_pred CCcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCcee
Q 003879 212 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 274 (789)
Q Consensus 212 ~e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 274 (789)
.+.+.|+||++.+..|++++|||+||..||..|+...... .....||+|+..+...++.+
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~---~~~~~CP~Cr~~~~~~~~~~ 76 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLD---KGESSCPVCRISYQPENIRP 76 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHT---TSCCCCTTTCCSSCSSSCCC
T ss_pred cCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcC---CCCCcCCCCCCccCHHhcCc
Confidence 3568999999999999999999999999999999862100 02478999999998777654
No 24
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.00 E-value=1e-10 Score=104.90 Aligned_cols=53 Identities=32% Similarity=0.743 Sum_probs=46.1
Q ss_pred CcccccccccCCCCceec-CCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCcee
Q 003879 213 LSVQCPICLEYPLCPQIT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 274 (789)
Q Consensus 213 e~~~CPICLe~~~~Pvit-~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 274 (789)
+.+.|+||++.+..|+++ +|||+||..||..|+.. ...||+|+..+...++.+
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~---------~~~CP~Cr~~~~~~~l~~ 74 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY---------KTQCPTCCVTVTEPDLKN 74 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT---------CCBCTTTCCBCCGGGCEE
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC---------CCCCCCCCCcCChhhCCc
Confidence 468999999999999987 89999999999999974 368999999887766654
No 25
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.98 E-value=2.3e-10 Score=119.60 Aligned_cols=56 Identities=20% Similarity=0.063 Sum_probs=48.9
Q ss_pred CCCcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCcee
Q 003879 211 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 274 (789)
Q Consensus 211 ~~e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 274 (789)
.++.+.||||++.+.+|++++|||+||..||.+|+... ...||+|+.++...+|.+
T Consensus 205 ~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~--------~~~cP~~~~~~~~~~l~~ 260 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV--------GHFNPVTRSPLTQEQLIP 260 (281)
T ss_dssp CCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHT--------CSSCTTTCCCCCGGGCEE
T ss_pred CCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHC--------CCCCcCCCCCCchhcCcc
Confidence 45679999999999999999999999999999999852 234999999998777765
No 26
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=2.3e-10 Score=94.97 Aligned_cols=49 Identities=35% Similarity=0.716 Sum_probs=42.1
Q ss_pred CCcccccccccCCCCc-------eecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccC
Q 003879 212 PLSVQCPICLEYPLCP-------QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 269 (789)
Q Consensus 212 ~e~~~CPICLe~~~~P-------vit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~ 269 (789)
.+...|+||++.+..+ ++++|||+||..||..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH---------CSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc---------CCCCCCCCCccCc
Confidence 3568899999998776 78999999999999999985 3689999998754
No 27
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.96 E-value=3.9e-10 Score=109.23 Aligned_cols=50 Identities=26% Similarity=0.494 Sum_probs=44.7
Q ss_pred CcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCC
Q 003879 213 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSK 270 (789)
Q Consensus 213 e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~ 270 (789)
+.+.|+||++.+..|++++|||+||..||..|+.. ....||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~--------~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKA--------QVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHT--------TCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHh--------CCCcCCCCCccCCCC
Confidence 46899999999999999999999999999999985 235899999998766
No 28
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.93 E-value=5e-10 Score=101.98 Aligned_cols=49 Identities=33% Similarity=0.726 Sum_probs=43.2
Q ss_pred CcccccccccCCCCceec-CCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCC
Q 003879 213 LSVQCPICLEYPLCPQIT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSK 270 (789)
Q Consensus 213 e~~~CPICLe~~~~Pvit-~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~ 270 (789)
+.+.||||++.+..|+.+ +|||+||..||..|+.. ...||+|+..+...
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~---------~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET---------SKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS---------CSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh---------CCcCcCCCcccccc
Confidence 578999999999999987 99999999999999974 36899999977543
No 29
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.93 E-value=5.9e-10 Score=99.53 Aligned_cols=60 Identities=23% Similarity=0.393 Sum_probs=47.9
Q ss_pred CCcccccccccCCCCceecC-CCCeecHHHHHHHHHcCCCCCCCCCcCCCCC--cccc-ccCCCcee
Q 003879 212 PLSVQCPICLEYPLCPQITS-CGHIFCFPCILQYLLMGDEDYKGDCFKRCPL--CFVM-ISSKELYT 274 (789)
Q Consensus 212 ~e~~~CPICLe~~~~Pvit~-CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPl--Cr~~-i~~~~L~~ 274 (789)
.+.+.||||++++.+|++++ |||+||..||..|+..... ......||+ |+.. +...+|.+
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~---~~~~~~CP~tgc~~~~l~~~~L~p 68 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQK---RKKKAYCPQIGCSHTDIRKSDLIQ 68 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHT---TTCCBCCCSTTCCCCCBCGGGEEE
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccC---cCCCCCCCcCcCcccccCHhhCcC
Confidence 46789999999999999995 9999999999999985310 012468999 9876 77777765
No 30
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.92 E-value=5.7e-10 Score=103.39 Aligned_cols=55 Identities=29% Similarity=0.630 Sum_probs=47.8
Q ss_pred CCcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCcee
Q 003879 212 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 274 (789)
Q Consensus 212 ~e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 274 (789)
.+.+.||||++.+..|++++|||+||..||..|+... ...||+||..+...++.+
T Consensus 16 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~--------~~~CP~Cr~~~~~~~~~~ 70 (118)
T 3hct_A 16 ESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDA--------GHKCPVDNEILLENQLFP 70 (118)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH--------CSBCTTTCCBCCGGGCEE
T ss_pred CCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhC--------CCCCCCCCCCcCHHhccc
Confidence 4578999999999999999999999999999999852 248999999998776654
No 31
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=6.2e-10 Score=89.45 Aligned_cols=45 Identities=38% Similarity=0.862 Sum_probs=39.0
Q ss_pred CcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCc
Q 003879 213 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 263 (789)
Q Consensus 213 e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlC 263 (789)
+.+.|+||++.+..|++++|||+||..||..|+.... ....||+|
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~------~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLE------RDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSC------CSCCCSCC
T ss_pred cCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcC------CCCCCCCC
Confidence 5688999999999999999999999999999976421 24789998
No 32
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.91 E-value=7.1e-10 Score=110.44 Aligned_cols=56 Identities=20% Similarity=0.051 Sum_probs=49.4
Q ss_pred CCCcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCcee
Q 003879 211 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 274 (789)
Q Consensus 211 ~~e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 274 (789)
.++.+.||||++++.+|++++|||+||..||..|+... ...||+|+.++...+|.+
T Consensus 103 ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~--------~~tcP~t~~~l~~~~L~p 158 (179)
T 2f42_A 103 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV--------GHFDPVTRSPLTQDQLIP 158 (179)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT--------CSBCTTTCCBCCGGGCEE
T ss_pred CcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhC--------CCCCCCCcCCCChhhCcc
Confidence 45789999999999999999999999999999999852 136999999998877776
No 33
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.91 E-value=2.9e-10 Score=111.19 Aligned_cols=48 Identities=38% Similarity=0.761 Sum_probs=42.2
Q ss_pred CcccccccccCCCCceec-CCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCcccccc
Q 003879 213 LSVQCPICLEYPLCPQIT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 268 (789)
Q Consensus 213 e~~~CPICLe~~~~Pvit-~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~ 268 (789)
+.+.||||++.+..|+++ +|||+||..||..|+... ...||+|+..+.
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~--------~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRSG--------NKECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTT--------CCBCTTTCCBCC
T ss_pred CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhC--------cCCCCCCCCcCC
Confidence 467999999999999987 999999999999999842 368999999774
No 34
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.91 E-value=6.2e-10 Score=95.20 Aligned_cols=53 Identities=26% Similarity=0.639 Sum_probs=43.8
Q ss_pred CcccccccccCCCCc---eecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCcee
Q 003879 213 LSVQCPICLEYPLCP---QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 274 (789)
Q Consensus 213 e~~~CPICLe~~~~P---vit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 274 (789)
+...|+||++.+..+ ++++|||+||..||.+|+.. ...||+||..+...++.+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~---------~~~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ---------HDSCPVCRKSLTGQNTAT 69 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT---------TCSCTTTCCCCCCSCSCC
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc---------CCcCcCcCCccCCcccCC
Confidence 467899999988755 45799999999999999974 368999999888776653
No 35
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.90 E-value=9.8e-11 Score=108.38 Aligned_cols=68 Identities=24% Similarity=0.510 Sum_probs=49.7
Q ss_pred cCccCCccceeeeecCCCCcccccccccCCCCceec-CCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCce
Q 003879 195 PDKMLQWEDIICVRYSNPLSVQCPICLEYPLCPQIT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 273 (789)
Q Consensus 195 pd~~l~w~~v~qv~~~~~e~~~CPICLe~~~~Pvit-~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~ 273 (789)
++...+|...........+.+.||||++.+..|+++ +|||+||..||..|+. ..||+|+..+...++.
T Consensus 3 ~~~~~~~~~~~~~~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~-----------~~CP~Cr~~~~~~~~~ 71 (117)
T 1jm7_B 3 PDGRGAWAHSRAALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG-----------TGCPVCYTPAWIQDLK 71 (117)
T ss_dssp SSTTCCCHHHHHHHHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT-----------TBCSSSCCBCSCSSCC
T ss_pred CCcccCccchHHHHHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc-----------CCCcCCCCcCcccccc
Confidence 444556643211111123578999999999999998 9999999999999875 4799999987554443
No 36
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.87 E-value=1e-09 Score=101.14 Aligned_cols=54 Identities=35% Similarity=0.605 Sum_probs=47.1
Q ss_pred CcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCcee
Q 003879 213 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 274 (789)
Q Consensus 213 e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 274 (789)
+.+.||||++.+..|+.++|||+||..||..|+... ...||+|+..+...++..
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~--------~~~CP~Cr~~~~~~~~~~ 75 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVM--------GSYCPSCRYPCFPTDLES 75 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT--------CSBCTTTCCBCCGGGCBC
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHC--------cCcCCCCCCCCCHhhccc
Confidence 368899999999999999999999999999999862 368999999988776643
No 37
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.86 E-value=1.3e-09 Score=86.66 Aligned_cols=47 Identities=38% Similarity=0.651 Sum_probs=40.3
Q ss_pred CcccccccccCCCC----ceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCcccccc
Q 003879 213 LSVQCPICLEYPLC----PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 268 (789)
Q Consensus 213 e~~~CPICLe~~~~----Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~ 268 (789)
+...|+||++.+.. +++++|||+||..||..|+.. ...||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE---------GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH---------TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc---------CCcCCCCCCcCC
Confidence 46789999998855 678999999999999999986 268999998764
No 38
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.86 E-value=2.9e-10 Score=104.58 Aligned_cols=48 Identities=31% Similarity=0.690 Sum_probs=42.0
Q ss_pred CcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCcccccc
Q 003879 213 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 268 (789)
Q Consensus 213 e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~ 268 (789)
+++.|+||++.+..|++++|||+||..||..|+.. ....||+||..+.
T Consensus 14 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--------~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 14 SECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEK--------ASLCCPFCRRRVS 61 (115)
T ss_dssp HHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCT--------TTSBCTTTCCBCH
T ss_pred CCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhH--------CcCCCCCCCcccC
Confidence 46899999999999999999999999999999863 2378999998664
No 39
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.85 E-value=8.2e-10 Score=102.82 Aligned_cols=57 Identities=35% Similarity=0.659 Sum_probs=49.0
Q ss_pred CCcccccccccCCCCc-------eecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCceeEEe
Q 003879 212 PLSVQCPICLEYPLCP-------QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHI 277 (789)
Q Consensus 212 ~e~~~CPICLe~~~~P-------vit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~ 277 (789)
.+.+.|+||++.+..| +.++|||+||..||.+|+.. ...||+|+..+...++.++++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP~Cr~~~~~~~l~~l~i 68 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCPTCRKKINHKRYHPIYI 68 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT---------CSBCTTTCCBCTTTCEEECBC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh---------CCCCCCCCCcCcccccccccc
Confidence 4578999999999888 89999999999999999974 358999999998888766443
No 40
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.84 E-value=2.2e-09 Score=98.34 Aligned_cols=53 Identities=28% Similarity=0.639 Sum_probs=41.3
Q ss_pred CcccccccccCCCCce------------------ecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccC
Q 003879 213 LSVQCPICLEYPLCPQ------------------ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 269 (789)
Q Consensus 213 e~~~CPICLe~~~~Pv------------------it~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~ 269 (789)
.+..|+||++.+..+. +++|||+||..||..|+..... .....||+||..+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~----~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNK----DGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCC----SSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccC----CCCCcCCCCCCccCC
Confidence 4568999999886653 7899999999999999965321 124689999997753
No 41
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.84 E-value=1.6e-09 Score=90.06 Aligned_cols=47 Identities=38% Similarity=0.886 Sum_probs=41.0
Q ss_pred CcccccccccCCCCc-eecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCcccccc
Q 003879 213 LSVQCPICLEYPLCP-QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 268 (789)
Q Consensus 213 e~~~CPICLe~~~~P-vit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~ 268 (789)
+...|+||++.+..| +.++|||.||..||..|+.. ...||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~---------~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ---------NPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH---------SCSTTTTCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC---------cCcCcCCChhhH
Confidence 457899999999886 68899999999999999974 368999998774
No 42
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.83 E-value=2.7e-09 Score=89.04 Aligned_cols=48 Identities=33% Similarity=0.678 Sum_probs=39.9
Q ss_pred CcccccccccCCC---CceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccC
Q 003879 213 LSVQCPICLEYPL---CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 269 (789)
Q Consensus 213 e~~~CPICLe~~~---~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~ 269 (789)
....|+||++.+. .++.++|||+||..||..|+.. ...||+||..+..
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~---------~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT---------NKKCPICRVDIEA 63 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH---------CSBCTTTCSBSCS
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc---------CCCCcCcCccccC
Confidence 4678999998774 4568999999999999999985 2469999997753
No 43
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.82 E-value=2e-09 Score=93.19 Aligned_cols=53 Identities=23% Similarity=0.377 Sum_probs=42.2
Q ss_pred CCcccccccccCCC--CceecC--CCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCc
Q 003879 212 PLSVQCPICLEYPL--CPQITS--CGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKEL 272 (789)
Q Consensus 212 ~e~~~CPICLe~~~--~Pvit~--CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L 272 (789)
.+++.||||++.+. ++++++ |||.||..||.+++.. ....||+||..+....+
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~--------~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD--------ENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS--------SCSBCTTTCCBCSSCSS
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc--------CCCCCCCCCCccCCCch
Confidence 46789999999774 345554 9999999999998753 23789999999887665
No 44
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=7.9e-10 Score=92.57 Aligned_cols=50 Identities=26% Similarity=0.649 Sum_probs=43.2
Q ss_pred CCcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCC
Q 003879 212 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKE 271 (789)
Q Consensus 212 ~e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~ 271 (789)
.+...|+||++.+.. ++++|||.||..||..|+.. ...||+||..+...+
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~---------~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR---------HRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC---------CSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC---------cCcCCCcCCcccCCC
Confidence 356889999999988 99999999999999999873 478999999887554
No 45
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.81 E-value=1.8e-09 Score=91.86 Aligned_cols=49 Identities=20% Similarity=0.510 Sum_probs=41.4
Q ss_pred CCcccccccccCCCCc---eecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccC
Q 003879 212 PLSVQCPICLEYPLCP---QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 269 (789)
Q Consensus 212 ~e~~~CPICLe~~~~P---vit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~ 269 (789)
.+...|+||++.+..+ +.++|||+||..||..|+.. ...||+||..+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~---------~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA---------NRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH---------CSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc---------CCcCcCcCCcCCC
Confidence 3567899999988776 67899999999999999985 3589999987753
No 46
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.81 E-value=2e-09 Score=95.37 Aligned_cols=48 Identities=29% Similarity=0.648 Sum_probs=40.5
Q ss_pred CcccccccccCCCC---ceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccC
Q 003879 213 LSVQCPICLEYPLC---PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 269 (789)
Q Consensus 213 e~~~CPICLe~~~~---Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~ 269 (789)
+...|+||++.+.. ++.++|||+||..||..|+.. ...||+||..+..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~---------~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK---------SGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT---------TCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc---------CCcCcCcCccCCC
Confidence 46789999988776 677899999999999999974 3589999987753
No 47
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.81 E-value=2e-09 Score=112.43 Aligned_cols=57 Identities=26% Similarity=0.521 Sum_probs=48.5
Q ss_pred CCCcccccccccCCCCcee-cCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCC--ccccccCCCcee
Q 003879 211 NPLSVQCPICLEYPLCPQI-TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPL--CFVMISSKELYT 274 (789)
Q Consensus 211 ~~e~~~CPICLe~~~~Pvi-t~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPl--Cr~~i~~~~L~~ 274 (789)
....+.||||++++..||+ +.|||+||..||..|+... ....||+ |+..+...+|.+
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~-------~~~~CPvtGCr~~l~~~dL~p 237 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGY-------TTRDCPQAACSQVVSMRDFVR 237 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTC-------SCEECSGGGCSCEECGGGEEE
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhC-------CCCCCCcccccCcCchhhCCc
Confidence 4468999999999999997 5999999999999999742 1368999 999888777765
No 48
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.79 E-value=1.2e-09 Score=104.93 Aligned_cols=52 Identities=23% Similarity=0.454 Sum_probs=44.4
Q ss_pred CCCcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCC
Q 003879 211 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSK 270 (789)
Q Consensus 211 ~~e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~ 270 (789)
..+.+.||||++.+..|+.+.|||+||..||..|+... ...||+||..+...
T Consensus 28 l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~--------~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSG--------PQNCAACVHEGIYE 79 (141)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGS--------CEECHHHHHTTCCC
T ss_pred CCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcC--------CCCCCCCCCccccc
Confidence 34678999999999999999999999999999999742 35899999976433
No 49
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.79 E-value=2e-09 Score=100.21 Aligned_cols=58 Identities=34% Similarity=0.650 Sum_probs=50.8
Q ss_pred CCCcccccccccCCCCc-------eecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCceeEEe
Q 003879 211 NPLSVQCPICLEYPLCP-------QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHI 277 (789)
Q Consensus 211 ~~e~~~CPICLe~~~~P-------vit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~ 277 (789)
..+...|+||++.+..+ +.++|||+||..||.+|+.. .+.||+||..+..+++.++|+
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP~Cr~~~~~~~~~~~~~ 133 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCPTCRKKINHKRYHPIYI 133 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH---------CSBCTTTCCBCCGGGEEEECC
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc---------CCCCCCCCCcCChhcceeeeC
Confidence 45678899999988776 78999999999999999985 368999999999999988764
No 50
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=3.3e-09 Score=89.75 Aligned_cols=48 Identities=33% Similarity=0.690 Sum_probs=39.9
Q ss_pred CcccccccccCCCCce---ecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccC
Q 003879 213 LSVQCPICLEYPLCPQ---ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 269 (789)
Q Consensus 213 e~~~CPICLe~~~~Pv---it~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~ 269 (789)
+...|+||++.+..+. +++|||+||..||..|+.. ...||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~---------~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV---------RKVCPLCNMPVLQ 64 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH---------CSBCTTTCCBCSS
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc---------CCcCCCcCccccc
Confidence 4678999999987665 3499999999999999985 2589999997753
No 51
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.78 E-value=2.6e-09 Score=85.09 Aligned_cols=46 Identities=30% Similarity=0.672 Sum_probs=38.8
Q ss_pred CcccccccccCCCC---ceecC-CCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 003879 213 LSVQCPICLEYPLC---PQITS-CGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 267 (789)
Q Consensus 213 e~~~CPICLe~~~~---Pvit~-CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i 267 (789)
+...|+||++.+.. ++.++ |||+||..||..|+.. ...||+||..+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~---------~~~CP~Cr~~~ 53 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS---------HSTCPLCRLTV 53 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT---------CCSCSSSCCCS
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc---------CCcCcCCCCEe
Confidence 46789999998876 66675 9999999999999864 36899999865
No 52
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.72 E-value=6.1e-09 Score=102.20 Aligned_cols=56 Identities=29% Similarity=0.601 Sum_probs=48.6
Q ss_pred CCCcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCcee
Q 003879 211 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 274 (789)
Q Consensus 211 ~~e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 274 (789)
..+.+.||||++.+..|++++|||+||..||..|+... ...||+||..+...++.+
T Consensus 15 ~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~--------~~~CP~Cr~~~~~~~~~~ 70 (170)
T 3hcs_A 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDA--------GHKCPVDNEILLENQLFP 70 (170)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH--------CSBCTTTCCBCCGGGCEE
T ss_pred CCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhC--------CCCCCCCccCcchhhhhh
Confidence 34679999999999999999999999999999999852 248999999998777654
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.69 E-value=3.5e-09 Score=85.46 Aligned_cols=45 Identities=24% Similarity=0.645 Sum_probs=39.0
Q ss_pred CcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccC
Q 003879 213 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 269 (789)
Q Consensus 213 e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~ 269 (789)
+.+.|+||++.+..|++++|||+||..||..+ ...||+||..+..
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~------------~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS------------GMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS------------SSSCSSCCSSSSC
T ss_pred cCCCceEeCCccCCeEEcCCCCcccHHHHccC------------CCCCCcCCcEeec
Confidence 56889999999999999999999999998661 3689999997753
No 54
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.67 E-value=7.2e-09 Score=114.26 Aligned_cols=50 Identities=30% Similarity=0.662 Sum_probs=43.6
Q ss_pred cccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCC
Q 003879 214 SVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKE 271 (789)
Q Consensus 214 ~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~ 271 (789)
...|+||++.+..|++++|||+||..||..|+... ...||+||..+....
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~--------~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESE--------GQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHT--------CSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcC--------CCCCCCCCCccCCce
Confidence 47899999999999999999999999999999841 368999999886543
No 55
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.65 E-value=1.2e-08 Score=84.21 Aligned_cols=55 Identities=22% Similarity=0.244 Sum_probs=48.4
Q ss_pred cccccccccCCCCceec-CCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCceeEEe
Q 003879 214 SVQCPICLEYPLCPQIT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHI 277 (789)
Q Consensus 214 ~~~CPICLe~~~~Pvit-~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~ 277 (789)
.+.||||++.+.+|+++ .|||+||..||.+|+.. ...||+++.++...+|.++..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~---------~~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD---------TGNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH---------HSBCTTTCCBCCGGGCEECCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh---------CCCCcCCcCCCChhhcEECcc
Confidence 36899999999999999 99999999999999985 245999999999999987543
No 56
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.62 E-value=1.7e-08 Score=83.75 Aligned_cols=48 Identities=31% Similarity=0.576 Sum_probs=41.7
Q ss_pred CCcccccccccCCCCceec--CCCCe-ecHHHHHHHHHcCCCCCCCCCcCCCCCcccccc
Q 003879 212 PLSVQCPICLEYPLCPQIT--SCGHI-FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 268 (789)
Q Consensus 212 ~e~~~CPICLe~~~~Pvit--~CGHi-FC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~ 268 (789)
.++..|+||++.+.+++++ +|||. ||..|+.+|+.. ...||+||..+.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~---------~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR---------NKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT---------TCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc---------CCcCCCcCcchh
Confidence 4567899999999999977 99999 899999999874 368999999874
No 57
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=2.5e-08 Score=86.43 Aligned_cols=48 Identities=25% Similarity=0.435 Sum_probs=38.0
Q ss_pred CcccccccccCCCC--------------ce-ecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccC
Q 003879 213 LSVQCPICLEYPLC--------------PQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 269 (789)
Q Consensus 213 e~~~CPICLe~~~~--------------Pv-it~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~ 269 (789)
++..|+||++.+.. ++ ++.|||+||..||.+|+.. ...||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~---------~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ---------NNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT---------CCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh---------CCCCCCcCCCcch
Confidence 45679999988765 33 4469999999999999985 3589999997653
No 58
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=2.7e-08 Score=84.88 Aligned_cols=44 Identities=27% Similarity=0.836 Sum_probs=38.4
Q ss_pred CcccccccccCCCCceecCCCCe-ecHHHHHHHHHcCCCCCCCCCcCCCCCccccccC
Q 003879 213 LSVQCPICLEYPLCPQITSCGHI-FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 269 (789)
Q Consensus 213 e~~~CPICLe~~~~Pvit~CGHi-FC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~ 269 (789)
+...|+||++.+..|++++|||. ||..|+.. ...||+||..+..
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-------------~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-------------VDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-------------CSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-------------CCCCccCCceecC
Confidence 45789999999999999999999 99999843 2689999998754
No 59
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.54 E-value=1.8e-08 Score=85.83 Aligned_cols=44 Identities=27% Similarity=0.827 Sum_probs=38.6
Q ss_pred CcccccccccCCCCceecCCCCe-ecHHHHHHHHHcCCCCCCCCCcCCCCCccccccC
Q 003879 213 LSVQCPICLEYPLCPQITSCGHI-FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 269 (789)
Q Consensus 213 e~~~CPICLe~~~~Pvit~CGHi-FC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~ 269 (789)
+...|+||++.+.++++++|||. ||..|+..| ..||+||..+..
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-------------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-------------DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-------------SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-------------ccCCCcCcCccC
Confidence 45789999999999999999999 999998654 579999998753
No 60
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.52 E-value=4.3e-08 Score=81.08 Aligned_cols=46 Identities=28% Similarity=0.604 Sum_probs=40.2
Q ss_pred cccccccccCCCCceec--CCCCe-ecHHHHHHHHHcCCCCCCCCCcCCCCCcccccc
Q 003879 214 SVQCPICLEYPLCPQIT--SCGHI-FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 268 (789)
Q Consensus 214 ~~~CPICLe~~~~Pvit--~CGHi-FC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~ 268 (789)
...|+||++.+.+++++ +|||. ||+.|+.+++.. ...||+||..|.
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~---------~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA---------GASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT---------TCBCTTTCCBCC
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh---------CCcCCCcCchhh
Confidence 56899999999999877 99998 999999998864 368999999874
No 61
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.39 E-value=2.1e-07 Score=85.10 Aligned_cols=47 Identities=28% Similarity=0.494 Sum_probs=38.6
Q ss_pred CcccccccccCCCCc------------------eecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCcccccc
Q 003879 213 LSVQCPICLEYPLCP------------------QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 268 (789)
Q Consensus 213 e~~~CPICLe~~~~P------------------vit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~ 268 (789)
++..|+||++.+..+ +.++|||.||..||..|+.. ...||+||..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~---------~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT---------RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT---------CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc---------CCcCcCCCCcce
Confidence 456899999887654 35799999999999999985 368999999753
No 62
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.38 E-value=3.3e-08 Score=87.84 Aligned_cols=59 Identities=29% Similarity=0.525 Sum_probs=43.0
Q ss_pred CcccccccccCCCCceec---CCCCeecHHHHHHHHHcCCCCCCCCCcCCCCC--cccc--ccCCCc
Q 003879 213 LSVQCPICLEYPLCPQIT---SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPL--CFVM--ISSKEL 272 (789)
Q Consensus 213 e~~~CPICLe~~~~Pvit---~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPl--Cr~~--i~~~~L 272 (789)
+.+.|+||++.+..+.++ .|||.||..||..|+........ .....||. |+.. +....+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~-~~~i~CP~~~C~~~~~~~~~~i 69 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGL-ETAISCPDAACPKQGHLQENEI 69 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCS-CCCEECSCTTCSSCCEECHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCC-cccccCccccCCCCCccCHHHH
Confidence 467899999998888754 79999999999999985311100 02368999 9987 554443
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=3.2e-07 Score=77.10 Aligned_cols=44 Identities=25% Similarity=0.692 Sum_probs=38.5
Q ss_pred CcccccccccCCCCceecCCCCe-ecHHHHHHHHHcCCCCCCCCCcCCCCCccccccC
Q 003879 213 LSVQCPICLEYPLCPQITSCGHI-FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 269 (789)
Q Consensus 213 e~~~CPICLe~~~~Pvit~CGHi-FC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~ 269 (789)
+...|+||++.+..+++++|||. ||..|+.. ...||+||..|..
T Consensus 14 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-------------~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-------------FQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-------------CSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-------------CCCCCCCCcchhc
Confidence 46789999999999999999999 99999883 2689999997753
No 64
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.29 E-value=1.6e-07 Score=81.28 Aligned_cols=44 Identities=27% Similarity=0.750 Sum_probs=38.2
Q ss_pred CcccccccccCCCCceecCCCCe-ecHHHHHHHHHcCCCCCCCCCcCCCCCccccccC
Q 003879 213 LSVQCPICLEYPLCPQITSCGHI-FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 269 (789)
Q Consensus 213 e~~~CPICLe~~~~Pvit~CGHi-FC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~ 269 (789)
+...|+||++.+.++++++|||. ||..|+.. +..||+||..+..
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-------------~~~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQ-------------LQSCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTT-------------CSBCTTTCCBCCE
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHh-------------cCcCCCCCchhhC
Confidence 35789999999999999999999 99999864 3589999998754
No 65
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.17 E-value=3.9e-07 Score=99.51 Aligned_cols=43 Identities=26% Similarity=0.822 Sum_probs=38.5
Q ss_pred CcccccccccCCCCceecCCCCe-ecHHHHHHHHHcCCCCCCCCCcCCCCCcccccc
Q 003879 213 LSVQCPICLEYPLCPQITSCGHI-FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 268 (789)
Q Consensus 213 e~~~CPICLe~~~~Pvit~CGHi-FC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~ 268 (789)
+...|+||++.+..|++++|||. ||..|+..| ..||+||..+.
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-------------~~CP~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-------------RKCPICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-------------SBCTTTCCBCC
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-------------CcCCCCCCCcc
Confidence 56899999999999999999999 999998753 57999999875
No 66
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.09 E-value=5.7e-07 Score=83.65 Aligned_cols=47 Identities=28% Similarity=0.484 Sum_probs=0.8
Q ss_pred CcccccccccCCCCc-----------------e-ecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCcccccc
Q 003879 213 LSVQCPICLEYPLCP-----------------Q-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 268 (789)
Q Consensus 213 e~~~CPICLe~~~~P-----------------v-it~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~ 268 (789)
++..|+||++.+..+ + .++|||.||..||..|+.. ...||+||..+.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~---------~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT---------RQVCPLDNREWE 111 (117)
T ss_dssp CC------------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc---------CCcCCCCCCeee
Confidence 346899999887653 2 2589999999999999985 368999998753
No 67
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=6.5e-06 Score=71.44 Aligned_cols=51 Identities=27% Similarity=0.488 Sum_probs=40.8
Q ss_pred CCcccccccccCC--CCceecCCC-----CeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccC
Q 003879 212 PLSVQCPICLEYP--LCPQITSCG-----HIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 269 (789)
Q Consensus 212 ~e~~~CPICLe~~--~~Pvit~CG-----HiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~ 269 (789)
.+...|.||++.+ ..+++++|. |.|+..||.+|+.... ...||+|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~-------~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSD-------TRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHC-------CSBCSSSCCBCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCC-------CCCCCCCCCeeec
Confidence 3457899999765 467788996 9999999999998632 2689999997754
No 68
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.58 E-value=4.5e-05 Score=68.43 Aligned_cols=45 Identities=27% Similarity=0.557 Sum_probs=37.4
Q ss_pred cccccccCCC-CceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCcccccc
Q 003879 216 QCPICLEYPL-CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 268 (789)
Q Consensus 216 ~CPICLe~~~-~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~ 268 (789)
.|++|--++. -.++.+|.|+||+.|+..|.+.. .+.||.|+..|.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~--------~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKG--------DKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTT--------CCBCTTTCCBCS
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhcc--------CCCCcCcCCeee
Confidence 5999987654 56799999999999999998753 378999999764
No 69
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.42 E-value=0.00014 Score=62.22 Aligned_cols=48 Identities=27% Similarity=0.596 Sum_probs=38.2
Q ss_pred cccccccccCCCCce-ecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCcccccc
Q 003879 214 SVQCPICLEYPLCPQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 268 (789)
Q Consensus 214 ~~~CPICLe~~~~Pv-it~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~ 268 (789)
...|.||.+.+..-. ...|+|.|...||.+|++... ...||+|+..+.
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~-------~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA-------EPRCPHCNDYWP 63 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCS-------SCCCTTTCSCCC
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcC-------CCCCCCCcCcCC
Confidence 467999999876444 348999999999999998632 268999998654
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.88 E-value=0.00022 Score=77.06 Aligned_cols=56 Identities=23% Similarity=0.508 Sum_probs=38.4
Q ss_pred CcccccccccCCCC----ce----ecCCCCeecHHHHHHHHHcCCCCCC--CCCcCCCCCcccccc
Q 003879 213 LSVQCPICLEYPLC----PQ----ITSCGHIFCFPCILQYLLMGDEDYK--GDCFKRCPLCFVMIS 268 (789)
Q Consensus 213 e~~~CPICLe~~~~----Pv----it~CGHiFC~~CIl~~l~~~~~~~k--~~~~~~CPlCr~~i~ 268 (789)
....|+||++.+.. |. ...|||.|...||..|+........ ..-...||.|+.++.
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 34689999987654 32 2489999999999999985321000 001247999999764
No 71
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.87 E-value=0.00071 Score=55.38 Aligned_cols=49 Identities=22% Similarity=0.406 Sum_probs=38.9
Q ss_pred CcccccccccCCCCceecCCC--C---eecHHHHHHHHHcCCCCCCCCCcCCCCCcccccc
Q 003879 213 LSVQCPICLEYPLCPQITSCG--H---IFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 268 (789)
Q Consensus 213 e~~~CPICLe~~~~Pvit~CG--H---iFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~ 268 (789)
+...|.||++....+.+.+|. | .|...||.+|+.... ...||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~-------~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISR-------NTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHT-------CSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCC-------CCccCCCCCeee
Confidence 467899999877777788865 4 899999999998532 368999998764
No 72
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.51 E-value=0.019 Score=50.92 Aligned_cols=32 Identities=19% Similarity=0.419 Sum_probs=27.3
Q ss_pred CcccccccccC-CCCcee--cCCCCeecHHHHHHH
Q 003879 213 LSVQCPICLEY-PLCPQI--TSCGHIFCFPCILQY 244 (789)
Q Consensus 213 e~~~CPICLe~-~~~Pvi--t~CGHiFC~~CIl~~ 244 (789)
+++.|+||++. +..|+. +.|+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 46789999964 777887 899999999999974
No 73
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=93.49 E-value=0.059 Score=55.73 Aligned_cols=48 Identities=27% Similarity=0.596 Sum_probs=38.0
Q ss_pred cccccccccCCCCce-ecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCcccccc
Q 003879 214 SVQCPICLEYPLCPQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 268 (789)
Q Consensus 214 ~~~CPICLe~~~~Pv-it~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~ 268 (789)
...|.||.+.....+ ...|+|.|...|+.+|+.... ...||.|+....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~-------~~~CP~C~~~W~ 228 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA-------EPRCPHCNDYWP 228 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCS-------SCBCTTTCCBCC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCC-------CCCCCCCCCCCC
Confidence 568999999876555 345999999999999997532 468999988653
No 74
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=90.66 E-value=0.18 Score=61.23 Aligned_cols=56 Identities=14% Similarity=0.036 Sum_probs=48.9
Q ss_pred CCCCcccccccccCCCCceecCCC-CeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCCcee
Q 003879 210 SNPLSVQCPICLEYPLCPQITSCG-HIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 274 (789)
Q Consensus 210 ~~~e~~~CPICLe~~~~Pvit~CG-HiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 274 (789)
..++.+.|||-++.+.+||+++.| ++|-..+|.+|+.. ...||.-+.++...+|.+
T Consensus 887 ~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~---------~~tdP~Tr~~L~~~~liP 943 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS---------DSTDPFNRMPLKLEDVTP 943 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT---------CCBCTTTCCBCCGGGCEE
T ss_pred CCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc---------CCCCCCCCCCCCcccccc
Confidence 456789999999999999999998 58999999999974 258999999888777766
No 75
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=90.45 E-value=0.14 Score=44.00 Aligned_cols=35 Identities=31% Similarity=0.726 Sum_probs=30.4
Q ss_pred cccccccccCCCCceecCC----CCeecHHHHHHHHHcC
Q 003879 214 SVQCPICLEYPLCPQITSC----GHIFCFPCILQYLLMG 248 (789)
Q Consensus 214 ~~~CPICLe~~~~Pvit~C----GHiFC~~CIl~~l~~~ 248 (789)
.+.|.+|.+.+.+-....| +|.||++|-..+++..
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q 53 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQ 53 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHH
T ss_pred eeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhc
Confidence 5789999999998887777 7999999999998863
No 76
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=89.19 E-value=0.18 Score=44.70 Aligned_cols=46 Identities=24% Similarity=0.635 Sum_probs=35.4
Q ss_pred CcccccccccCCCCceecCC-CCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccC
Q 003879 213 LSVQCPICLEYPLCPQITSC-GHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 269 (789)
Q Consensus 213 e~~~CPICLe~~~~Pvit~C-GHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~ 269 (789)
..+.|-.|+-... -++.| -|.+|+.|+..++.. ...||+|+.++..
T Consensus 27 G~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~---------SdrCpIC~~pLPt 73 (99)
T 2ko5_A 27 GPQFCKSCWFENK--GLVECNNHYLCLNCLTLLLSV---------SNRCPICKMPLPT 73 (99)
T ss_dssp CCCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSS---------SSEETTTTEECCC
T ss_pred CcccChhhccccC--CeeeecchhhHHHHHHHHHhh---------ccCCcccCCcCCc
Confidence 4578999986665 24455 599999999988774 4689999998754
No 77
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=84.41 E-value=0.75 Score=50.34 Aligned_cols=53 Identities=32% Similarity=0.588 Sum_probs=39.6
Q ss_pred cccccccccCCCCce-ecCCCCeecHH--HHHHHHHcCCCCCCCCCcCCCCCccccccCCCce
Q 003879 214 SVQCPICLEYPLCPQ-ITSCGHIFCFP--CILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 273 (789)
Q Consensus 214 ~~~CPICLe~~~~Pv-it~CGHiFC~~--CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~ 273 (789)
.+.|||-...+..|+ -..|.|.-|+. -++.+.... ....||+|...+...+|.
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~-------~~W~CPIC~k~~~~~dL~ 304 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQI-------PTWQCPVCQIDIALENLA 304 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHS-------CCCBCTTTCCBCCGGGEE
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcC-------CceeCCCCCcccCHHHee
Confidence 589999999999998 56899995555 455544432 246799999988877765
No 78
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=81.41 E-value=1.2 Score=48.61 Aligned_cols=53 Identities=26% Similarity=0.412 Sum_probs=39.4
Q ss_pred cccccccccCCCCce-ecCCCCeecHH--HHHHHHHcCCCCCCCCCcCCCCCccccccCCCce
Q 003879 214 SVQCPICLEYPLCPQ-ITSCGHIFCFP--CILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 273 (789)
Q Consensus 214 ~~~CPICLe~~~~Pv-it~CGHiFC~~--CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~ 273 (789)
.+.|||-...+..|+ -..|.|.-|+. -++.+.... ....||+|...+...+|.
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~-------~~W~CPiC~k~~~~~dL~ 270 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKK-------PTWICPVCDKKAAYESLI 270 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHS-------CCCBCTTTCSBCCGGGEE
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhC-------CCeECCCCCcccCHHHeE
Confidence 578999999999988 56899995554 445544432 236899999988887775
No 79
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=66.26 E-value=1.2 Score=49.02 Aligned_cols=54 Identities=22% Similarity=0.325 Sum_probs=0.0
Q ss_pred CcccccccccCCCCc----eecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCcccccc
Q 003879 213 LSVQCPICLEYPLCP----QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 268 (789)
Q Consensus 213 e~~~CPICLe~~~~P----vit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~ 268 (789)
+...|.+|...+.-- ....||++||..|....+..... .....+.|-.|...+.
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~--~~~~~rvC~~C~~~l~ 431 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYL--KDRMAKVCDGCFGELK 431 (434)
T ss_dssp ------------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCC--CCCcCEecHHHHHHHH
Confidence 457899999876422 25689999999998765533211 1113477888877553
No 80
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=54.49 E-value=7.7 Score=33.31 Aligned_cols=34 Identities=18% Similarity=0.335 Sum_probs=24.8
Q ss_pred CCCCcccccccccCCCCce----ecCCCCeecHHHHHH
Q 003879 210 SNPLSVQCPICLEYPLCPQ----ITSCGHIFCFPCILQ 243 (789)
Q Consensus 210 ~~~e~~~CPICLe~~~~Pv----it~CGHiFC~~CIl~ 243 (789)
+..+...|.+|...|.--. --.||++||..|...
T Consensus 17 pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 17 EDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred cCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 3445678999998765322 357999999999654
No 81
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.20 E-value=7.4 Score=33.37 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=24.4
Q ss_pred CCCCcccccccccCCCCce----ecCCCCeecHHHHHH
Q 003879 210 SNPLSVQCPICLEYPLCPQ----ITSCGHIFCFPCILQ 243 (789)
Q Consensus 210 ~~~e~~~CPICLe~~~~Pv----it~CGHiFC~~CIl~ 243 (789)
+..+...|.+|...|.--. --.||.+||..|...
T Consensus 10 pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 10 PTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp SCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred cCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 3445678999998764322 357999999999543
No 82
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=53.17 E-value=4.5 Score=37.54 Aligned_cols=32 Identities=25% Similarity=0.492 Sum_probs=23.4
Q ss_pred CcccccccccCCCCce----ecCCCCeecHHHHHHH
Q 003879 213 LSVQCPICLEYPLCPQ----ITSCGHIFCFPCILQY 244 (789)
Q Consensus 213 e~~~CPICLe~~~~Pv----it~CGHiFC~~CIl~~ 244 (789)
+...|.+|...|.--. .-.||++||..|....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 3468999998765321 4579999999996543
No 83
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=49.51 E-value=7.4 Score=33.25 Aligned_cols=33 Identities=27% Similarity=0.640 Sum_probs=24.3
Q ss_pred CCCcccccccccCCCCce----ecCCCCeecHHHHHH
Q 003879 211 NPLSVQCPICLEYPLCPQ----ITSCGHIFCFPCILQ 243 (789)
Q Consensus 211 ~~e~~~CPICLe~~~~Pv----it~CGHiFC~~CIl~ 243 (789)
..+...|.+|...|.--. --.||.+||..|...
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 445578999998775322 357999999999654
No 84
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=44.93 E-value=7.4 Score=33.93 Aligned_cols=32 Identities=22% Similarity=0.466 Sum_probs=23.2
Q ss_pred CcccccccccCCCCc----eecCCCCeecHHHHHHH
Q 003879 213 LSVQCPICLEYPLCP----QITSCGHIFCFPCILQY 244 (789)
Q Consensus 213 e~~~CPICLe~~~~P----vit~CGHiFC~~CIl~~ 244 (789)
+...|.+|...|.-- ....||++||..|....
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 356799999876422 14689999999996543
No 85
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=44.73 E-value=8.8 Score=33.39 Aligned_cols=31 Identities=23% Similarity=0.498 Sum_probs=22.8
Q ss_pred CcccccccccCCCCc--e--ecCCCCeecHHHHHH
Q 003879 213 LSVQCPICLEYPLCP--Q--ITSCGHIFCFPCILQ 243 (789)
Q Consensus 213 e~~~CPICLe~~~~P--v--it~CGHiFC~~CIl~ 243 (789)
+...|.+|...|.-- + .-.||++||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 346899999876532 2 457999999999644
No 86
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=42.24 E-value=9.1 Score=35.38 Aligned_cols=31 Identities=26% Similarity=0.501 Sum_probs=22.2
Q ss_pred CcccccccccCCCCce----ecCCCCeecHHHHHH
Q 003879 213 LSVQCPICLEYPLCPQ----ITSCGHIFCFPCILQ 243 (789)
Q Consensus 213 e~~~CPICLe~~~~Pv----it~CGHiFC~~CIl~ 243 (789)
+...|.+|...|..-. .-.||.+||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~ 52 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQ 52 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCC
Confidence 3467999998775322 457999999999543
No 87
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=41.80 E-value=8.1 Score=38.92 Aligned_cols=30 Identities=23% Similarity=0.574 Sum_probs=22.1
Q ss_pred cccccccccCCCCc--e--ecCCCCeecHHHHHH
Q 003879 214 SVQCPICLEYPLCP--Q--ITSCGHIFCFPCILQ 243 (789)
Q Consensus 214 ~~~CPICLe~~~~P--v--it~CGHiFC~~CIl~ 243 (789)
...|++|...|.-- + .-.||++||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 36899999876422 1 457999999999543
No 88
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=40.97 E-value=14 Score=37.51 Aligned_cols=30 Identities=27% Similarity=0.557 Sum_probs=22.3
Q ss_pred cccccccccCCCCc----eecCCCCeecHHHHHH
Q 003879 214 SVQCPICLEYPLCP----QITSCGHIFCFPCILQ 243 (789)
Q Consensus 214 ~~~CPICLe~~~~P----vit~CGHiFC~~CIl~ 243 (789)
...|.+|...|.-- ..-.||++||..|...
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 35899999876422 2468999999999654
No 89
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=35.49 E-value=18 Score=30.10 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=21.1
Q ss_pred ccccccccCCCCce----ecCCCCeecHHHHH
Q 003879 215 VQCPICLEYPLCPQ----ITSCGHIFCFPCIL 242 (789)
Q Consensus 215 ~~CPICLe~~~~Pv----it~CGHiFC~~CIl 242 (789)
..|.+|...|.--. --.||.+||..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 47999998765322 35799999999953
No 90
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=33.57 E-value=5 Score=32.55 Aligned_cols=32 Identities=22% Similarity=0.567 Sum_probs=22.5
Q ss_pred ccccccccCCCCc----eec--C--CCCeecHHHHHHHHH
Q 003879 215 VQCPICLEYPLCP----QIT--S--CGHIFCFPCILQYLL 246 (789)
Q Consensus 215 ~~CPICLe~~~~P----vit--~--CGHiFC~~CIl~~l~ 246 (789)
-.||-|....... .|+ . ||+.||+.|...|-.
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 5799998766432 233 3 999999999877654
No 91
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=31.25 E-value=21 Score=28.95 Aligned_cols=40 Identities=23% Similarity=0.588 Sum_probs=28.3
Q ss_pred ccccccccCCCCce---ecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCc
Q 003879 215 VQCPICLEYPLCPQ---ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 263 (789)
Q Consensus 215 ~~CPICLe~~~~Pv---it~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlC 263 (789)
..|--|...+.... -..|+++||..|=+ |+.. ....||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~-fiHe--------~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDV-FVHD--------SLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHH-TTTT--------TSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhH-HHHh--------hccCCcCC
Confidence 45888988775433 56899999999944 3332 35789988
No 92
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=30.85 E-value=21 Score=42.72 Aligned_cols=55 Identities=27% Similarity=0.433 Sum_probs=38.0
Q ss_pred CCCcccccccccCCCCce----------ecCCCCee--------------------cHHHHHHHHHcCCCC-CCCCCcCC
Q 003879 211 NPLSVQCPICLEYPLCPQ----------ITSCGHIF--------------------CFPCILQYLLMGDED-YKGDCFKR 259 (789)
Q Consensus 211 ~~e~~~CPICLe~~~~Pv----------it~CGHiF--------------------C~~CIl~~l~~~~~~-~k~~~~~~ 259 (789)
.++...|+-|+.++.+|. .|.||-.| |-.|-..|-.-.... |.+ ..-
T Consensus 103 ~pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAq--p~a 180 (772)
T 4g9i_A 103 PPDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAE--PTA 180 (772)
T ss_dssp CCCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCT--TCC
T ss_pred CCchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCC--CCC
Confidence 566788999997655542 46777665 999999998654322 222 368
Q ss_pred CCCccccc
Q 003879 260 CPLCFVMI 267 (789)
Q Consensus 260 CPlCr~~i 267 (789)
||.|.-.+
T Consensus 181 C~~CGP~l 188 (772)
T 4g9i_A 181 CPVCGPSY 188 (772)
T ss_dssp CTTTSCCE
T ss_pred CccCCceE
Confidence 99997744
No 93
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=30.37 E-value=10 Score=27.49 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=12.7
Q ss_pred CCcccccccccCCCCce
Q 003879 212 PLSVQCPICLEYPLCPQ 228 (789)
Q Consensus 212 ~e~~~CPICLe~~~~Pv 228 (789)
.+.+.||||+..+..+-
T Consensus 3 ~EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 3 SEGFICPQCMKSLGSAD 19 (34)
T ss_dssp SEEEECTTTCCEESSHH
T ss_pred CcccCCcHHHHHcCCHH
Confidence 35689999998776653
No 94
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=30.26 E-value=21 Score=41.91 Aligned_cols=56 Identities=30% Similarity=0.501 Sum_probs=38.9
Q ss_pred CCCCcccccccccCCCCce----------ecCCCCee--------------------cHHHHHHHHHcCCCC-CCCCCcC
Q 003879 210 SNPLSVQCPICLEYPLCPQ----------ITSCGHIF--------------------CFPCILQYLLMGDED-YKGDCFK 258 (789)
Q Consensus 210 ~~~e~~~CPICLe~~~~Pv----------it~CGHiF--------------------C~~CIl~~l~~~~~~-~k~~~~~ 258 (789)
..++...|+-|+.++.+|. .|.||-.| |-.|...|-.-.... |.+ ..
T Consensus 13 i~pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAq--p~ 90 (657)
T 3ttc_A 13 IVPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQ--PV 90 (657)
T ss_dssp CCCCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCT--TC
T ss_pred cCCchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCC--CC
Confidence 3567788999997655442 46777664 999999998754322 222 36
Q ss_pred CCCCccccc
Q 003879 259 RCPLCFVMI 267 (789)
Q Consensus 259 ~CPlCr~~i 267 (789)
-||.|.-.+
T Consensus 91 aCp~CGP~l 99 (657)
T 3ttc_A 91 ACPECGPYL 99 (657)
T ss_dssp CCTTTSCCE
T ss_pred cCcccCccc
Confidence 899997755
No 95
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=27.60 E-value=31 Score=29.49 Aligned_cols=14 Identities=36% Similarity=1.013 Sum_probs=11.7
Q ss_pred CCCCeecHHHHHHH
Q 003879 231 SCGHIFCFPCILQY 244 (789)
Q Consensus 231 ~CGHiFC~~CIl~~ 244 (789)
.||+.||+.|-..|
T Consensus 48 ~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 48 QCHQTFCVRCKRQW 61 (86)
T ss_dssp TTCCEECSSSCSBC
T ss_pred CCCCccccccCCch
Confidence 59999999997655
No 96
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=26.20 E-value=63 Score=30.68 Aligned_cols=49 Identities=12% Similarity=0.300 Sum_probs=36.6
Q ss_pred CCcccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCC
Q 003879 212 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKE 271 (789)
Q Consensus 212 ~e~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~ 271 (789)
.+=+.|..|...+.......=|.+||..|..+.+. .+|..|...|...+
T Consensus 31 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~-----------~~C~~C~~~I~~~~ 79 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG-----------TKCAACQLGIPPTQ 79 (169)
T ss_dssp TTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHS-----------CBCTTTCCBCCTTS
T ss_pred cccCccCCCCCcCCCCCcccCCeeeeccccccccc-----------ccccccccccCCCc
Confidence 34588999988776544566789999999877653 58999988776543
No 97
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=26.01 E-value=5.3 Score=42.72 Aligned_cols=45 Identities=22% Similarity=0.501 Sum_probs=32.7
Q ss_pred CcccccccccCCCCceec----CCC--CeecHHHHHHHHHcCCCCCCCCCcCCCCCcccc
Q 003879 213 LSVQCPICLEYPLCPQIT----SCG--HIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVM 266 (789)
Q Consensus 213 e~~~CPICLe~~~~Pvit----~CG--HiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~ 266 (789)
....||+|-..+...++. .=| +.+|..|-..|-.. ..+||.|...
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~---------R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV---------RIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC---------TTSCSSSCCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeec---------CcCCcCCCCC
Confidence 357899999998877654 244 46798897766442 3689999885
No 98
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=25.82 E-value=25 Score=42.07 Aligned_cols=55 Identities=25% Similarity=0.351 Sum_probs=37.1
Q ss_pred CCCcccccccccCCCCce----------ecCCCCe--------------------ecHHHHHHHHHcCCCC-CCCCCcCC
Q 003879 211 NPLSVQCPICLEYPLCPQ----------ITSCGHI--------------------FCFPCILQYLLMGDED-YKGDCFKR 259 (789)
Q Consensus 211 ~~e~~~CPICLe~~~~Pv----------it~CGHi--------------------FC~~CIl~~l~~~~~~-~k~~~~~~ 259 (789)
.++...|+-|+.++.+|. .|.||-. +|-.|...|-.-.... |.+ ..-
T Consensus 108 ~pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAq--p~a 185 (761)
T 3vth_A 108 SPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQ--PVA 185 (761)
T ss_dssp CCCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCT--TCC
T ss_pred CCCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCC--CCc
Confidence 456788999997655442 4677744 4999999987643321 222 367
Q ss_pred CCCccccc
Q 003879 260 CPLCFVMI 267 (789)
Q Consensus 260 CPlCr~~i 267 (789)
||.|.-.+
T Consensus 186 C~~CGP~l 193 (761)
T 3vth_A 186 CFDCGPSL 193 (761)
T ss_dssp CTTTSCCE
T ss_pred CCccCCee
Confidence 99997754
No 99
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=25.20 E-value=37 Score=30.58 Aligned_cols=49 Identities=16% Similarity=0.112 Sum_probs=36.3
Q ss_pred cccccccccCCC---CceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCccccccCCC
Q 003879 214 SVQCPICLEYPL---CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKE 271 (789)
Q Consensus 214 ~~~CPICLe~~~---~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~i~~~~ 271 (789)
=+.|..|...+. ......=|.+||..|..+.+.. ..+|-.|..+|....
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~---------~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN---------SGAGGSGGHMGSGGD 83 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC---------CCSSSCSSCCSCCEE
T ss_pred CCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC---------CCccccCCCCcCchh
Confidence 478899988875 2346677899999998886642 127999998886544
No 100
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=24.94 E-value=75 Score=27.66 Aligned_cols=51 Identities=14% Similarity=0.317 Sum_probs=31.1
Q ss_pred CcccccccccCCCCce--ecCCCCeecHHHHHHHHHcCCC-------CCCCCCcCCCCCc
Q 003879 213 LSVQCPICLEYPLCPQ--ITSCGHIFCFPCILQYLLMGDE-------DYKGDCFKRCPLC 263 (789)
Q Consensus 213 e~~~CPICLe~~~~Pv--it~CGHiFC~~CIl~~l~~~~~-------~~k~~~~~~CPlC 263 (789)
.+..|.||--....-. .-.|+-+|...|+.+.=....+ ..+-.....||.|
T Consensus 14 ~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~C 73 (89)
T 1wil_A 14 NDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYC 73 (89)
T ss_dssp CSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTT
T ss_pred CCcccCccccccccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCcccccc
Confidence 5678999984332221 3358999999999885222111 0112235679999
No 101
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=21.38 E-value=76 Score=25.93 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=30.5
Q ss_pred cccccccccCCCCceecCCCCeecHHHHHHHHHcCCCCCCCCCcCCCCCcccc
Q 003879 214 SVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVM 266 (789)
Q Consensus 214 ~~~CPICLe~~~~Pvit~CGHiFC~~CIl~~l~~~~~~~k~~~~~~CPlCr~~ 266 (789)
...|.||.+.-.--.--.|...|...|+..-+....+ ....||.|...
T Consensus 12 ~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~-----g~W~C~~C~~~ 59 (66)
T 2lri_C 12 GARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPG-----TGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTTSCCTTCEECSSSCCEECHHHHCTTTCCCCS-----SSCCCTTTTTC
T ss_pred CCCcCCCCCCCeEEECCCCCCceecccCCCccCcCCC-----CCEECccccCC
Confidence 4579999864221112368899999998655543221 23579999753
No 102
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=21.31 E-value=45 Score=27.68 Aligned_cols=31 Identities=26% Similarity=0.581 Sum_probs=23.3
Q ss_pred cccccccccCCCCceecCC-CCeecHHHHHHHH
Q 003879 214 SVQCPICLEYPLCPQITSC-GHIFCFPCILQYL 245 (789)
Q Consensus 214 ~~~CPICLe~~~~Pvit~C-GHiFC~~CIl~~l 245 (789)
..-|-||.+..+ -+...| |-.||..|....-
T Consensus 8 ~pWC~ICneDAt-lrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 8 LPWCCICNEDAT-LRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CSSCTTTCSCCC-EEETTTTSEEECSSHHHHHT
T ss_pred CCeeEEeCCCCe-EEecCCCCceehHHHHHHHc
Confidence 345999998833 346788 8899999977654
No 103
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=20.26 E-value=38 Score=30.58 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=19.7
Q ss_pred cccccccccCCCCceecCCCCeecH
Q 003879 214 SVQCPICLEYPLCPQITSCGHIFCF 238 (789)
Q Consensus 214 ~~~CPICLe~~~~Pvit~CGHiFC~ 238 (789)
...|..|...-..-+.+.|||++|.
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCg 48 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCG 48 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEEC
T ss_pred CCcCccccCCCCeeeeeecCccccC
Confidence 4569999976555568899999994
Done!