Query 003881
Match_columns 789
No_of_seqs 547 out of 3663
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 13:40:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003881.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003881hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0339 ATP-dependent RNA heli 100.0 1E-125 2E-130 1000.3 49.5 698 1-728 1-715 (731)
2 KOG0331 ATP-dependent RNA heli 100.0 2E-80 4.4E-85 682.8 36.0 426 180-607 16-477 (519)
3 KOG0336 ATP-dependent RNA heli 100.0 3E-78 6.6E-83 625.3 31.9 433 175-610 162-604 (629)
4 KOG0334 RNA helicase [RNA proc 100.0 9.7E-78 2.1E-82 689.9 34.6 437 169-606 308-748 (997)
5 KOG0333 U5 snRNP-like RNA heli 100.0 1.3E-76 2.7E-81 631.3 35.7 493 102-604 128-651 (673)
6 PTZ00110 helicase; Provisional 100.0 4E-73 8.7E-78 656.1 50.6 438 169-608 73-514 (545)
7 KOG0341 DEAD-box protein abstr 100.0 2.9E-73 6.2E-78 584.7 21.2 424 179-606 124-557 (610)
8 PLN00206 DEAD-box ATP-dependen 100.0 2.4E-69 5.2E-74 622.8 47.4 483 106-606 8-503 (518)
9 KOG0330 ATP-dependent RNA heli 100.0 4.1E-69 8.9E-74 557.0 33.2 366 223-596 59-425 (476)
10 KOG0335 ATP-dependent RNA heli 100.0 3E-67 6.5E-72 568.8 32.3 393 212-606 61-472 (482)
11 KOG0338 ATP-dependent RNA heli 100.0 4.2E-67 9.2E-72 556.1 30.2 364 224-591 180-546 (691)
12 COG0513 SrmB Superfamily II DN 100.0 2.2E-65 4.8E-70 586.4 40.8 364 225-593 29-396 (513)
13 PRK10590 ATP-dependent RNA hel 100.0 2.8E-62 6.1E-67 557.2 44.4 364 226-592 2-366 (456)
14 KOG0328 Predicted ATP-dependen 100.0 7.7E-63 1.7E-67 490.3 28.4 376 221-603 23-398 (400)
15 PRK04537 ATP-dependent RNA hel 100.0 5.9E-61 1.3E-65 556.6 46.3 366 224-592 8-378 (572)
16 PRK04837 ATP-dependent RNA hel 100.0 8E-60 1.7E-64 533.2 42.8 367 224-593 7-377 (423)
17 KOG0342 ATP-dependent RNA heli 100.0 1.2E-60 2.6E-65 508.0 30.4 361 224-587 81-446 (543)
18 KOG0340 ATP-dependent RNA heli 100.0 1.1E-60 2.3E-65 489.2 27.0 393 223-622 5-421 (442)
19 PRK11776 ATP-dependent RNA hel 100.0 4.9E-58 1.1E-62 524.0 41.4 358 225-591 4-362 (460)
20 PRK11634 ATP-dependent RNA hel 100.0 4.7E-58 1E-62 535.3 41.9 358 224-589 5-363 (629)
21 KOG0345 ATP-dependent RNA heli 100.0 2.5E-58 5.5E-63 486.7 34.5 356 225-583 4-369 (567)
22 PRK11192 ATP-dependent RNA hel 100.0 6E-57 1.3E-61 511.8 42.6 363 226-591 2-365 (434)
23 KOG0326 ATP-dependent RNA heli 100.0 2.4E-59 5.2E-64 472.2 18.4 366 225-599 85-450 (459)
24 KOG0343 RNA Helicase [RNA proc 100.0 1.3E-57 2.8E-62 487.6 30.5 375 201-586 50-431 (758)
25 KOG0348 ATP-dependent RNA heli 100.0 4.5E-57 9.7E-62 482.3 28.8 364 224-589 135-565 (708)
26 KOG0346 RNA helicase [RNA proc 100.0 1.2E-56 2.6E-61 469.8 28.2 366 225-592 19-424 (569)
27 PRK01297 ATP-dependent RNA hel 100.0 7E-55 1.5E-59 499.6 43.0 379 222-603 84-469 (475)
28 KOG0347 RNA helicase [RNA proc 100.0 1.5E-56 3.3E-61 479.5 22.1 372 220-595 176-587 (731)
29 PTZ00424 helicase 45; Provisio 100.0 7.7E-54 1.7E-58 481.8 39.5 369 224-599 27-395 (401)
30 KOG0344 ATP-dependent RNA heli 100.0 7.8E-55 1.7E-59 474.1 26.2 402 204-607 111-524 (593)
31 KOG0332 ATP-dependent RNA heli 100.0 3.9E-52 8.4E-57 428.4 28.1 370 222-601 87-468 (477)
32 KOG0337 ATP-dependent RNA heli 100.0 4.6E-53 1E-57 441.1 18.8 361 224-590 20-380 (529)
33 KOG0327 Translation initiation 100.0 3.7E-52 8.1E-57 433.2 23.4 367 224-600 25-392 (397)
34 KOG4284 DEAD box protein [Tran 100.0 1.5E-50 3.2E-55 439.0 23.2 356 217-580 17-381 (980)
35 TIGR03817 DECH_helic helicase/ 100.0 9.2E-48 2E-52 457.1 38.7 344 231-590 20-400 (742)
36 KOG0350 DEAD-box ATP-dependent 100.0 3.9E-48 8.5E-53 411.7 27.0 352 234-592 146-554 (620)
37 PLN03137 ATP-dependent DNA hel 100.0 6.5E-46 1.4E-50 437.7 37.6 344 226-588 436-797 (1195)
38 TIGR00614 recQ_fam ATP-depende 100.0 3.4E-45 7.4E-50 418.2 35.7 327 242-589 6-344 (470)
39 PRK11057 ATP-dependent DNA hel 100.0 4.9E-43 1.1E-47 410.8 38.0 332 233-587 10-352 (607)
40 TIGR00580 mfd transcription-re 100.0 8.6E-43 1.9E-47 418.2 40.8 395 193-630 390-816 (926)
41 PRK13767 ATP-dependent helicas 100.0 7.9E-43 1.7E-47 422.7 37.5 343 232-576 18-396 (876)
42 PRK02362 ski2-like helicase; P 100.0 6.4E-43 1.4E-47 419.6 35.1 338 226-579 2-398 (737)
43 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.1E-42 2.5E-47 405.8 32.6 315 243-577 12-390 (844)
44 PRK10689 transcription-repair 100.0 1E-41 2.2E-46 417.1 41.9 402 193-631 539-966 (1147)
45 PRK10917 ATP-dependent DNA hel 100.0 1.7E-41 3.7E-46 401.9 40.7 347 234-606 248-617 (681)
46 PRK00254 ski2-like helicase; P 100.0 3.3E-42 7.2E-47 412.4 34.4 339 226-579 2-389 (720)
47 TIGR01389 recQ ATP-dependent D 100.0 4E-42 8.6E-47 404.0 34.2 326 239-588 4-341 (591)
48 TIGR00643 recG ATP-dependent D 100.0 3.2E-41 6.9E-46 397.2 39.3 359 235-630 224-607 (630)
49 KOG0329 ATP-dependent RNA heli 100.0 2E-43 4.3E-48 347.0 13.9 333 225-600 42-378 (387)
50 PRK01172 ski2-like helicase; P 100.0 2.5E-40 5.5E-45 394.4 33.1 334 226-579 2-379 (674)
51 PRK09401 reverse gyrase; Revie 100.0 2.2E-38 4.7E-43 388.6 33.9 302 239-564 72-431 (1176)
52 COG1201 Lhr Lhr-like helicases 100.0 3.3E-38 7.1E-43 366.6 31.2 341 231-577 7-361 (814)
53 PRK09751 putative ATP-dependen 100.0 1E-37 2.3E-42 383.1 33.9 303 267-572 1-379 (1490)
54 PHA02653 RNA helicase NPH-II; 100.0 5.5E-38 1.2E-42 365.1 29.6 311 250-580 167-516 (675)
55 KOG0349 Putative DEAD-box RNA 100.0 8.3E-39 1.8E-43 333.9 18.2 278 299-577 287-614 (725)
56 PRK14701 reverse gyrase; Provi 100.0 6.5E-37 1.4E-41 382.6 32.1 327 235-584 67-462 (1638)
57 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.1E-36 2.4E-41 362.1 29.5 304 252-581 7-339 (819)
58 COG0514 RecQ Superfamily II DN 100.0 2.6E-36 5.5E-41 339.5 30.1 332 238-590 7-349 (590)
59 PRK12898 secA preprotein trans 100.0 3.3E-36 7.1E-41 345.0 29.7 317 246-580 102-588 (656)
60 COG1111 MPH1 ERCC4-like helica 100.0 7.1E-36 1.5E-40 321.5 29.7 324 244-578 12-481 (542)
61 TIGR01587 cas3_core CRISPR-ass 100.0 3.7E-36 7.9E-41 333.2 28.4 301 264-578 1-336 (358)
62 PRK11664 ATP-dependent RNA hel 100.0 1.9E-36 4.1E-41 361.0 27.2 302 253-580 11-341 (812)
63 PHA02558 uvsW UvsW helicase; P 100.0 5.5E-36 1.2E-40 344.3 28.8 300 245-566 112-441 (501)
64 TIGR01054 rgy reverse gyrase. 100.0 3.4E-35 7.4E-40 361.0 32.8 293 235-550 66-410 (1171)
65 COG1200 RecG RecG-like helicas 100.0 3.8E-34 8.3E-39 320.5 35.4 361 233-630 248-632 (677)
66 COG1202 Superfamily II helicas 100.0 2.6E-35 5.6E-40 317.8 22.2 339 226-578 195-553 (830)
67 PRK13766 Hef nuclease; Provisi 100.0 7.6E-34 1.7E-38 344.6 36.4 324 245-579 13-480 (773)
68 PRK09200 preprotein translocas 100.0 1.8E-34 3.9E-39 337.2 29.5 319 244-580 76-543 (790)
69 COG1204 Superfamily II helicas 100.0 2E-34 4.4E-39 339.5 29.2 336 231-578 15-408 (766)
70 TIGR03714 secA2 accessory Sec 100.0 7.8E-34 1.7E-38 328.9 28.5 320 247-581 68-540 (762)
71 TIGR00963 secA preprotein tran 100.0 1.4E-33 3E-38 324.8 26.6 318 246-581 55-520 (745)
72 KOG0354 DEAD-box like helicase 100.0 7.9E-33 1.7E-37 314.3 27.4 321 246-578 61-529 (746)
73 TIGR03158 cas3_cyano CRISPR-as 100.0 4E-32 8.6E-37 299.4 29.7 290 251-562 1-357 (357)
74 PRK11131 ATP-dependent RNA hel 100.0 1E-31 2.2E-36 325.1 27.4 301 252-580 79-413 (1294)
75 TIGR00603 rad25 DNA repair hel 100.0 8.6E-32 1.9E-36 312.0 24.7 321 246-594 254-625 (732)
76 PRK04914 ATP-dependent helicas 100.0 1E-30 2.2E-35 312.9 31.6 318 246-576 151-601 (956)
77 KOG0952 DNA/RNA helicase MER3/ 100.0 9.5E-31 2.1E-35 299.3 27.4 331 243-582 106-495 (1230)
78 COG1205 Distinct helicase fami 100.0 3.7E-30 8.1E-35 307.5 31.9 334 233-576 56-420 (851)
79 KOG0352 ATP-dependent DNA heli 100.0 4E-30 8.7E-35 269.1 25.0 334 235-587 6-371 (641)
80 COG1197 Mfd Transcription-repa 100.0 3.8E-29 8.3E-34 294.4 34.5 402 194-631 534-960 (1139)
81 KOG0351 ATP-dependent DNA heli 100.0 1.2E-29 2.7E-34 300.8 28.8 332 236-588 252-602 (941)
82 KOG0385 Chromatin remodeling c 100.0 5.3E-30 1.1E-34 284.9 23.7 317 246-579 166-600 (971)
83 PRK05580 primosome assembly pr 100.0 1.1E-28 2.4E-33 291.7 35.2 315 246-581 143-552 (679)
84 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.3E-29 2.8E-34 308.1 27.1 304 253-580 73-406 (1283)
85 PLN03142 Probable chromatin-re 100.0 4.2E-29 9.1E-34 299.8 28.1 320 246-578 168-599 (1033)
86 cd00268 DEADc DEAD-box helicas 100.0 7.3E-29 1.6E-33 252.4 24.9 202 227-431 1-202 (203)
87 KOG0353 ATP-dependent DNA heli 100.0 8.3E-28 1.8E-32 248.0 25.2 335 229-580 75-469 (695)
88 PRK09694 helicase Cas3; Provis 100.0 7.4E-27 1.6E-31 278.2 34.8 312 245-566 284-664 (878)
89 COG1061 SSL2 DNA or RNA helica 100.0 9.6E-28 2.1E-32 271.1 23.3 294 246-564 35-376 (442)
90 KOG0384 Chromodomain-helicase 100.0 1.3E-28 2.8E-33 285.7 16.3 315 246-579 369-812 (1373)
91 PRK13104 secA preprotein trans 100.0 3.5E-27 7.6E-32 275.3 27.4 317 247-581 82-590 (896)
92 KOG0387 Transcription-coupled 100.0 4.9E-27 1.1E-31 262.8 25.9 328 246-588 204-671 (923)
93 TIGR00595 priA primosomal prot 100.0 1.4E-26 2.9E-31 264.9 29.3 292 266-579 1-382 (505)
94 PRK12899 secA preprotein trans 100.0 6.8E-27 1.5E-31 272.1 26.8 181 193-385 31-228 (970)
95 KOG0951 RNA helicase BRR2, DEA 100.0 7E-27 1.5E-31 270.3 24.6 344 232-583 296-707 (1674)
96 KOG0947 Cytoplasmic exosomal R 99.9 3.3E-26 7.1E-31 259.4 27.6 310 247-578 297-723 (1248)
97 PRK12904 preprotein translocas 99.9 2.6E-26 5.7E-31 268.0 26.9 317 246-580 80-575 (830)
98 KOG1002 Nucleotide excision re 99.9 1.3E-26 2.8E-31 246.4 20.9 362 180-578 141-749 (791)
99 PRK12906 secA preprotein trans 99.9 5.5E-26 1.2E-30 264.3 24.8 315 246-580 79-555 (796)
100 KOG0948 Nuclear exosomal RNA h 99.9 2.3E-26 5.1E-31 254.8 17.7 310 247-578 129-539 (1041)
101 KOG2340 Uncharacterized conser 99.9 1.2E-25 2.5E-30 241.6 19.2 344 244-588 213-678 (698)
102 KOG0392 SNF2 family DNA-depend 99.9 7.1E-25 1.5E-29 253.6 23.3 325 246-578 974-1454(1549)
103 PRK11448 hsdR type I restricti 99.9 4E-24 8.7E-29 261.8 29.1 303 246-565 412-801 (1123)
104 KOG0950 DNA polymerase theta/e 99.9 1.1E-24 2.4E-29 249.3 20.7 344 231-588 207-621 (1008)
105 PRK13107 preprotein translocas 99.9 2.4E-24 5.2E-29 250.9 22.7 316 247-580 82-593 (908)
106 COG4581 Superfamily II RNA hel 99.9 5.3E-24 1.1E-28 251.4 24.0 310 247-576 119-535 (1041)
107 PF00270 DEAD: DEAD/DEAH box h 99.9 5.8E-24 1.3E-28 209.4 19.6 166 249-420 1-169 (169)
108 KOG0389 SNF2 family DNA-depend 99.9 1.6E-24 3.4E-29 242.5 16.3 321 247-579 399-889 (941)
109 COG4098 comFA Superfamily II D 99.9 1.4E-22 3.1E-27 208.5 28.9 302 246-576 96-414 (441)
110 KOG0391 SNF2 family DNA-depend 99.9 6.4E-23 1.4E-27 234.7 25.5 125 455-579 1260-1388(1958)
111 COG1643 HrpA HrpA-like helicas 99.9 9E-23 1.9E-27 239.9 20.7 309 251-580 54-389 (845)
112 KOG0926 DEAH-box RNA helicase 99.9 1.5E-22 3.2E-27 226.0 19.7 306 252-578 261-704 (1172)
113 PF06862 DUF1253: Protein of u 99.9 9.7E-22 2.1E-26 216.2 25.4 292 297-588 36-425 (442)
114 KOG0922 DEAH-box RNA helicase 99.9 1.4E-21 3.1E-26 217.6 20.4 303 251-580 55-392 (674)
115 KOG0390 DNA repair protein, SN 99.9 3.9E-21 8.4E-26 221.7 24.2 323 246-577 237-706 (776)
116 COG1203 CRISPR-associated heli 99.9 4.5E-21 9.7E-26 229.2 23.5 324 247-578 195-550 (733)
117 KOG0923 mRNA splicing factor A 99.9 1.7E-20 3.6E-25 206.5 20.8 308 248-577 266-605 (902)
118 KOG0388 SNF2 family DNA-depend 99.9 1.5E-20 3.2E-25 207.3 20.3 147 453-606 1026-1175(1185)
119 KOG0924 mRNA splicing factor A 99.9 1.3E-20 2.9E-25 207.3 19.6 309 247-577 356-696 (1042)
120 TIGR00631 uvrb excinuclease AB 99.9 4.1E-20 8.9E-25 216.6 25.0 133 454-588 425-563 (655)
121 KOG0920 ATP-dependent RNA heli 99.9 2.8E-20 6.1E-25 217.9 23.5 314 248-578 174-544 (924)
122 TIGR01407 dinG_rel DnaQ family 99.8 3.1E-19 6.8E-24 217.6 31.5 346 232-591 231-829 (850)
123 PRK12900 secA preprotein trans 99.8 6.8E-20 1.5E-24 214.5 20.9 139 453-594 580-731 (1025)
124 COG1110 Reverse gyrase [DNA re 99.8 7.3E-19 1.6E-23 202.7 27.7 289 236-549 71-417 (1187)
125 KOG0386 Chromatin remodeling c 99.8 1.8E-20 4E-25 214.7 13.7 315 246-577 393-837 (1157)
126 COG1198 PriA Primosomal protei 99.8 2.9E-18 6.2E-23 199.4 31.4 317 246-583 197-608 (730)
127 smart00487 DEXDc DEAD-like hel 99.8 8E-19 1.7E-23 175.8 21.8 187 243-435 4-192 (201)
128 PRK05298 excinuclease ABC subu 99.8 7.5E-19 1.6E-23 207.4 24.8 148 454-603 429-591 (652)
129 KOG1000 Chromatin remodeling p 99.8 2.6E-18 5.6E-23 184.1 26.0 316 245-578 196-602 (689)
130 TIGR00348 hsdR type I site-spe 99.8 4.7E-18 1E-22 201.3 28.2 299 248-564 239-634 (667)
131 PRK12326 preprotein translocas 99.8 5.8E-18 1.2E-22 193.6 26.1 316 246-580 77-549 (764)
132 COG4096 HsdR Type I site-speci 99.8 9.9E-19 2.2E-23 199.2 19.1 297 246-565 164-526 (875)
133 COG0556 UvrB Helicase subunit 99.8 3.2E-17 6.9E-22 178.0 25.5 165 403-577 386-556 (663)
134 PRK13103 secA preprotein trans 99.8 2.5E-17 5.4E-22 192.7 22.2 316 247-581 82-594 (913)
135 PRK07246 bifunctional ATP-depe 99.7 4E-16 8.6E-21 188.1 30.4 327 244-591 243-798 (820)
136 COG4889 Predicted helicase [Ge 99.7 1.8E-17 3.9E-22 186.7 15.3 359 225-595 140-618 (1518)
137 KOG1123 RNA polymerase II tran 99.7 4.1E-18 8.8E-23 182.5 9.0 310 246-583 301-658 (776)
138 KOG4439 RNA polymerase II tran 99.7 3.1E-17 6.7E-22 182.2 16.1 122 469-593 745-870 (901)
139 KOG0949 Predicted helicase, DE 99.7 2.2E-16 4.8E-21 180.5 20.7 159 247-415 511-673 (1330)
140 PRK12903 secA preprotein trans 99.7 1.6E-15 3.5E-20 175.8 26.0 315 247-580 78-541 (925)
141 KOG1015 Transcription regulato 99.7 5.2E-16 1.1E-20 176.1 20.2 122 456-577 1127-1276(1567)
142 KOG0925 mRNA splicing factor A 99.7 5.1E-16 1.1E-20 166.3 17.4 328 224-578 24-387 (699)
143 cd00079 HELICc Helicase superf 99.7 2.1E-16 4.5E-21 148.3 12.5 119 455-574 12-131 (131)
144 TIGR03117 cas_csf4 CRISPR-asso 99.7 3.4E-14 7.3E-19 164.5 32.3 116 469-586 469-625 (636)
145 KOG0953 Mitochondrial RNA heli 99.7 9.6E-16 2.1E-20 166.9 16.9 277 263-586 192-484 (700)
146 PRK08074 bifunctional ATP-depe 99.7 8.3E-15 1.8E-19 179.8 26.8 123 469-591 751-908 (928)
147 PF00271 Helicase_C: Helicase 99.7 2.5E-16 5.5E-21 134.6 8.7 78 488-565 1-78 (78)
148 COG0553 HepA Superfamily II DN 99.7 4.5E-15 9.6E-20 183.4 23.0 325 246-579 337-823 (866)
149 CHL00122 secA preprotein trans 99.6 6.3E-15 1.4E-19 172.1 21.7 274 247-537 76-491 (870)
150 cd00046 DEXDc DEAD-like helica 99.6 5E-15 1.1E-19 139.5 16.7 144 263-413 1-144 (144)
151 PRK12902 secA preprotein trans 99.6 1.6E-13 3.4E-18 160.1 25.9 127 247-385 85-218 (939)
152 KOG4150 Predicted ATP-dependen 99.6 1.6E-14 3.4E-19 156.9 15.7 349 238-597 277-661 (1034)
153 PF04851 ResIII: Type III rest 99.6 2.1E-14 4.5E-19 142.9 12.2 153 247-415 3-184 (184)
154 COG1199 DinG Rad3-related DNA 99.5 1.1E-12 2.4E-17 157.0 25.7 105 470-577 479-617 (654)
155 smart00490 HELICc helicase sup 99.5 7.8E-14 1.7E-18 119.4 8.9 81 485-565 2-82 (82)
156 PRK11747 dinG ATP-dependent DN 99.5 1.7E-11 3.6E-16 146.4 30.0 118 470-590 534-688 (697)
157 KOG0951 RNA helicase BRR2, DEA 99.5 1.1E-12 2.4E-17 153.9 18.8 314 247-586 1143-1502(1674)
158 TIGR02562 cas3_yersinia CRISPR 99.5 5.1E-12 1.1E-16 149.7 23.2 309 247-565 408-880 (1110)
159 TIGR00604 rad3 DNA repair heli 99.5 1.7E-11 3.7E-16 147.3 28.2 74 244-322 7-84 (705)
160 PRK14873 primosome assembly pr 99.5 7.4E-12 1.6E-16 147.0 24.0 273 271-577 169-538 (665)
161 PRK12901 secA preprotein trans 99.4 7.8E-12 1.7E-16 147.5 18.8 125 453-580 610-743 (1112)
162 PF00176 SNF2_N: SNF2 family N 99.3 6.8E-12 1.5E-16 135.1 11.2 156 251-413 1-172 (299)
163 PF02399 Herpes_ori_bp: Origin 99.3 2.7E-10 5.9E-15 132.3 20.6 286 265-576 52-386 (824)
164 KOG1016 Predicted DNA helicase 99.2 2E-10 4.4E-15 129.0 13.9 107 471-577 720-848 (1387)
165 KOG1001 Helicase-like transcri 99.1 2.7E-10 5.8E-15 133.2 11.2 105 471-575 540-646 (674)
166 smart00489 DEXDc3 DEAD-like he 99.0 2.7E-09 5.8E-14 114.5 14.4 73 247-321 8-84 (289)
167 smart00488 DEXDc2 DEAD-like he 99.0 2.7E-09 5.8E-14 114.5 14.4 73 247-321 8-84 (289)
168 COG0610 Type I site-specific r 99.0 2.8E-08 6E-13 122.1 24.0 298 263-576 274-651 (962)
169 PF07652 Flavi_DEAD: Flaviviru 99.0 5.7E-10 1.2E-14 104.4 6.9 135 262-417 4-140 (148)
170 KOG0921 Dosage compensation co 99.0 1.7E-09 3.8E-14 123.8 11.3 311 254-577 385-773 (1282)
171 COG0653 SecA Preprotein transl 98.9 2.7E-08 5.9E-13 116.6 17.9 317 248-579 79-546 (822)
172 PF07517 SecA_DEAD: SecA DEAD- 98.7 4.6E-07 1E-11 95.1 16.9 132 242-385 72-210 (266)
173 TIGR00596 rad1 DNA repair prot 98.6 6.6E-07 1.4E-11 107.3 16.3 70 345-414 4-73 (814)
174 KOG0383 Predicted helicase [Ge 98.5 5.1E-09 1.1E-13 121.1 -6.2 78 455-533 615-696 (696)
175 PRK15483 type III restriction- 98.2 1.4E-05 3.1E-10 96.2 15.2 74 520-593 501-583 (986)
176 KOG0952 DNA/RNA helicase MER3/ 98.2 5.8E-07 1.3E-11 105.7 2.8 258 248-521 928-1206(1230)
177 PF13086 AAA_11: AAA domain; P 98.2 1.7E-05 3.6E-10 81.8 13.3 73 247-320 1-75 (236)
178 COG3587 Restriction endonuclea 98.1 0.00026 5.6E-09 82.6 21.1 73 520-592 483-567 (985)
179 PF13604 AAA_30: AAA domain; P 98.1 2.2E-05 4.7E-10 79.5 10.5 123 247-412 1-130 (196)
180 KOG1802 RNA helicase nonsense 98.1 4.4E-05 9.5E-10 86.3 13.5 86 238-334 401-486 (935)
181 PF13872 AAA_34: P-loop contai 98.1 3.3E-05 7.2E-10 81.5 11.8 167 231-416 27-223 (303)
182 PF12340 DUF3638: Protein of u 98.0 0.00011 2.3E-09 75.1 14.5 153 225-387 3-187 (229)
183 TIGR00376 DNA helicase, putati 98.0 0.00073 1.6E-08 80.4 23.1 67 246-320 156-223 (637)
184 PF02562 PhoH: PhoH-like prote 97.8 8.1E-05 1.8E-09 75.2 8.5 146 246-412 3-155 (205)
185 PF13307 Helicase_C_2: Helicas 97.7 3.6E-05 7.9E-10 75.8 5.4 78 470-549 9-92 (167)
186 PF09848 DUF2075: Uncharacteri 97.7 0.00015 3.3E-09 80.3 10.1 107 265-399 4-117 (352)
187 TIGR01447 recD exodeoxyribonuc 97.7 0.0004 8.6E-09 81.6 13.7 142 250-412 148-295 (586)
188 PRK10875 recD exonuclease V su 97.6 0.00045 9.8E-09 81.3 13.0 142 249-412 154-301 (615)
189 KOG1132 Helicase of the DEAD s 97.6 0.00028 6E-09 82.7 10.5 77 247-323 21-135 (945)
190 KOG1803 DNA helicase [Replicat 97.6 0.00015 3.3E-09 81.9 8.0 66 246-319 184-250 (649)
191 PRK10536 hypothetical protein; 97.5 0.0014 3E-08 68.3 13.7 146 244-410 56-210 (262)
192 TIGR01448 recD_rel helicase, p 97.5 0.00097 2.1E-08 80.5 13.7 126 246-412 322-452 (720)
193 PF13871 Helicase_C_4: Helicas 97.4 0.0006 1.3E-08 71.8 9.0 82 511-592 52-144 (278)
194 KOG1805 DNA replication helica 97.1 0.0021 4.4E-08 76.3 10.5 138 229-386 655-810 (1100)
195 PF13245 AAA_19: Part of AAA d 97.1 0.0017 3.8E-08 54.9 7.1 53 262-318 10-62 (76)
196 TIGR02768 TraA_Ti Ti-type conj 97.0 0.0084 1.8E-07 72.8 15.1 124 246-412 351-476 (744)
197 PRK08181 transposase; Validate 97.0 0.0053 1.1E-07 65.1 11.1 111 257-416 101-212 (269)
198 KOG0298 DEAD box-containing he 97.0 0.0015 3.3E-08 79.2 7.8 154 261-420 373-557 (1394)
199 PF13401 AAA_22: AAA domain; P 97.0 0.0028 6.1E-08 59.1 8.0 17 262-278 4-20 (131)
200 PRK13889 conjugal transfer rel 97.0 0.0068 1.5E-07 74.8 13.3 124 246-412 345-470 (988)
201 KOG1131 RNA polymerase II tran 96.9 0.0085 1.8E-07 66.6 12.2 74 245-322 14-91 (755)
202 PRK04296 thymidine kinase; Pro 96.8 0.0024 5.2E-08 64.3 6.8 109 263-412 3-114 (190)
203 TIGR02760 TraI_TIGR conjugativ 96.8 0.086 1.9E-06 70.3 22.8 236 247-519 429-685 (1960)
204 PRK14974 cell division protein 96.8 0.014 3.1E-07 63.7 12.6 132 263-425 141-276 (336)
205 PF05970 PIF1: PIF1-like helic 96.6 0.0036 7.8E-08 69.7 6.9 60 247-314 1-66 (364)
206 COG1875 NYN ribonuclease and A 96.6 0.015 3.3E-07 62.6 11.0 143 244-411 225-386 (436)
207 PF00580 UvrD-helicase: UvrD/R 96.6 0.0055 1.2E-07 66.2 8.0 123 248-382 1-125 (315)
208 smart00492 HELICc3 helicase su 96.6 0.012 2.6E-07 56.2 9.2 67 483-549 4-79 (141)
209 TIGR01073 pcrA ATP-dependent D 96.6 0.087 1.9E-06 64.3 19.0 72 246-323 3-74 (726)
210 PRK13826 Dtr system oriT relax 96.5 0.036 7.7E-07 69.1 15.2 137 232-412 367-505 (1102)
211 COG3421 Uncharacterized protei 96.5 0.003 6.5E-08 71.3 5.1 142 267-416 2-168 (812)
212 PRK06526 transposase; Provisio 96.5 0.011 2.3E-07 62.4 9.0 24 255-278 91-114 (254)
213 cd00009 AAA The AAA+ (ATPases 96.5 0.031 6.7E-07 52.2 11.4 17 262-278 19-35 (151)
214 PRK14722 flhF flagellar biosyn 96.5 0.015 3.2E-07 64.4 10.2 133 261-425 136-270 (374)
215 PRK12723 flagellar biosynthesi 96.4 0.033 7.1E-07 62.2 12.3 132 262-424 174-309 (388)
216 PF14617 CMS1: U3-containing 9 96.3 0.0081 1.8E-07 62.6 6.7 86 296-382 124-211 (252)
217 smart00491 HELICc2 helicase su 96.3 0.016 3.5E-07 55.4 8.2 67 483-549 4-80 (142)
218 KOG0339 ATP-dependent RNA heli 96.3 0.37 7.9E-06 54.0 19.2 71 470-544 295-376 (731)
219 PRK06921 hypothetical protein; 96.1 0.067 1.5E-06 56.8 12.5 45 261-313 116-160 (266)
220 smart00382 AAA ATPases associa 96.0 0.014 3E-07 54.1 6.2 42 262-311 2-43 (148)
221 COG1419 FlhF Flagellar GTP-bin 95.9 0.098 2.1E-06 57.8 13.1 135 260-426 201-337 (407)
222 PF00448 SRP54: SRP54-type pro 95.9 0.052 1.1E-06 54.9 10.3 131 265-424 4-136 (196)
223 PRK05703 flhF flagellar biosyn 95.9 0.18 3.8E-06 57.3 15.4 130 262-425 221-355 (424)
224 PF03354 Terminase_1: Phage Te 95.9 0.019 4.1E-07 66.4 7.8 150 250-411 1-161 (477)
225 PRK07952 DNA replication prote 95.9 0.1 2.3E-06 54.5 12.4 48 370-417 160-209 (244)
226 PRK11889 flhF flagellar biosyn 95.8 0.13 2.9E-06 56.9 13.4 129 263-425 242-375 (436)
227 PHA02533 17 large terminase pr 95.8 0.049 1.1E-06 63.4 10.7 148 247-413 59-210 (534)
228 PRK08116 hypothetical protein; 95.6 0.18 3.8E-06 53.7 13.4 48 370-418 176-226 (268)
229 cd01120 RecA-like_NTPases RecA 95.6 0.11 2.4E-06 49.8 10.9 44 370-413 83-136 (165)
230 TIGR01075 uvrD DNA helicase II 95.6 0.052 1.1E-06 66.0 10.2 109 246-383 3-114 (715)
231 PRK05642 DNA replication initi 95.5 0.044 9.6E-07 57.1 8.1 45 371-415 96-141 (234)
232 PRK11773 uvrD DNA-dependent he 95.4 0.06 1.3E-06 65.5 10.1 71 246-322 8-78 (721)
233 PRK06893 DNA replication initi 95.4 0.051 1.1E-06 56.4 8.0 46 371-416 90-137 (229)
234 PRK08727 hypothetical protein; 95.3 0.046 1E-06 56.9 7.5 47 371-417 92-140 (233)
235 PRK06835 DNA replication prote 95.2 0.27 5.8E-06 53.9 13.2 48 370-417 244-293 (329)
236 PRK11054 helD DNA helicase IV; 95.2 0.061 1.3E-06 64.6 8.8 74 244-323 193-266 (684)
237 PRK14723 flhF flagellar biosyn 95.1 0.46 9.9E-06 57.2 15.8 131 262-425 185-318 (767)
238 PRK08084 DNA replication initi 95.1 0.07 1.5E-06 55.6 8.1 42 373-414 98-141 (235)
239 TIGR01074 rep ATP-dependent DN 95.0 0.12 2.6E-06 62.5 10.9 108 248-383 2-112 (664)
240 COG2805 PilT Tfp pilus assembl 95.0 0.034 7.5E-07 58.5 5.3 54 218-290 99-152 (353)
241 TIGR01547 phage_term_2 phage t 95.0 0.093 2E-06 59.1 9.3 145 264-425 3-152 (396)
242 PRK12377 putative replication 95.0 0.12 2.6E-06 54.2 9.4 45 262-315 101-145 (248)
243 PRK14712 conjugal transfer nic 95.0 0.15 3.2E-06 65.8 11.7 65 246-314 834-900 (1623)
244 PRK14087 dnaA chromosomal repl 94.9 0.089 1.9E-06 60.2 9.0 109 263-417 142-253 (450)
245 PRK13709 conjugal transfer nic 94.9 0.18 3.9E-06 65.8 12.5 127 246-412 966-1099(1747)
246 PRK06731 flhF flagellar biosyn 94.9 0.45 9.8E-06 50.5 13.4 131 261-425 74-209 (270)
247 PRK00149 dnaA chromosomal repl 94.8 0.15 3.3E-06 58.5 10.5 47 372-418 211-259 (450)
248 KOG1133 Helicase of the DEAD s 94.8 0.73 1.6E-05 53.7 15.5 123 471-606 630-798 (821)
249 PRK12727 flagellar biosynthesi 94.7 0.5 1.1E-05 54.4 14.1 165 226-425 300-482 (559)
250 KOG1513 Nuclear helicase MOP-3 94.7 0.049 1.1E-06 63.5 5.9 82 513-594 850-942 (1300)
251 PRK14086 dnaA chromosomal repl 94.7 0.16 3.4E-06 59.6 10.2 49 370-418 375-425 (617)
252 TIGR03420 DnaA_homol_Hda DnaA 94.6 0.15 3.2E-06 52.5 9.0 42 373-414 91-133 (226)
253 KOG0298 DEAD box-containing he 94.6 0.032 6.9E-07 68.3 4.3 105 463-571 1214-1318(1394)
254 PRK10919 ATP-dependent DNA hel 94.5 0.063 1.4E-06 64.7 6.8 71 247-323 2-72 (672)
255 TIGR00362 DnaA chromosomal rep 94.5 0.26 5.7E-06 55.7 11.3 47 372-418 199-247 (405)
256 KOG0989 Replication factor C, 94.4 0.24 5.2E-06 52.5 9.8 57 367-424 124-183 (346)
257 cd01124 KaiC KaiC is a circadi 94.4 0.28 6.1E-06 48.6 10.2 48 265-321 2-49 (187)
258 COG1484 DnaC DNA replication p 94.2 0.24 5.1E-06 52.3 9.6 52 258-318 101-152 (254)
259 PF05621 TniB: Bacterial TniB 94.2 0.3 6.5E-06 52.2 10.2 112 263-404 62-179 (302)
260 PRK07764 DNA polymerase III su 94.2 0.16 3.5E-06 62.1 9.3 42 371-414 119-160 (824)
261 PRK10917 ATP-dependent DNA hel 94.2 0.1 2.2E-06 63.0 7.7 98 447-544 286-389 (681)
262 PRK00771 signal recognition pa 94.2 0.5 1.1E-05 53.7 12.7 53 373-425 176-229 (437)
263 PHA02544 44 clamp loader, smal 94.2 0.38 8.2E-06 52.3 11.4 39 372-410 100-138 (316)
264 TIGR00064 ftsY signal recognit 94.2 0.59 1.3E-05 49.9 12.4 132 263-425 73-214 (272)
265 COG1444 Predicted P-loop ATPas 94.0 0.36 7.9E-06 57.6 11.2 149 239-414 206-357 (758)
266 cd00561 CobA_CobO_BtuR ATP:cor 93.9 1.2 2.6E-05 43.4 12.8 54 369-422 92-147 (159)
267 PRK12422 chromosomal replicati 93.8 0.33 7.2E-06 55.4 10.4 53 371-423 201-255 (445)
268 PRK09183 transposase/IS protei 93.8 0.26 5.6E-06 52.2 8.8 22 257-278 97-118 (259)
269 PRK05580 primosome assembly pr 93.8 0.22 4.9E-06 60.0 9.3 94 452-546 171-266 (679)
270 PTZ00112 origin recognition co 93.7 0.67 1.4E-05 56.1 12.7 23 264-287 782-805 (1164)
271 PRK00411 cdc6 cell division co 93.6 0.44 9.5E-06 53.6 11.0 24 263-287 56-79 (394)
272 PRK08939 primosomal protein Dn 93.6 0.57 1.2E-05 50.8 11.3 48 370-417 215-265 (306)
273 TIGR02785 addA_Gpos recombinat 93.6 0.26 5.6E-06 63.5 10.1 124 247-383 1-126 (1232)
274 PRK12323 DNA polymerase III su 93.6 0.48 1.1E-05 55.8 11.2 41 370-411 122-162 (700)
275 PRK08903 DnaA regulatory inact 93.5 0.32 6.9E-06 50.2 8.8 43 372-415 90-133 (227)
276 PRK14721 flhF flagellar biosyn 93.4 0.68 1.5E-05 52.2 11.7 133 261-425 190-324 (420)
277 PHA03333 putative ATPase subun 93.4 0.97 2.1E-05 53.3 13.1 149 247-413 169-332 (752)
278 PTZ00293 thymidine kinase; Pro 93.3 0.41 8.8E-06 48.8 8.9 39 262-308 4-42 (211)
279 PRK06995 flhF flagellar biosyn 93.3 0.5 1.1E-05 54.2 10.6 19 262-280 256-274 (484)
280 TIGR00643 recG ATP-dependent D 93.3 0.19 4E-06 60.3 7.6 96 449-544 262-363 (630)
281 PRK11331 5-methylcytosine-spec 93.3 0.23 4.9E-06 56.1 7.7 31 248-278 180-210 (459)
282 COG2256 MGS1 ATPase related to 93.2 0.35 7.7E-06 53.1 8.8 36 372-413 104-140 (436)
283 PRK14088 dnaA chromosomal repl 93.2 0.67 1.5E-05 53.0 11.5 51 372-422 194-246 (440)
284 PRK05707 DNA polymerase III su 93.2 0.42 9.2E-06 52.4 9.5 41 248-289 4-48 (328)
285 PRK12402 replication factor C 93.1 0.61 1.3E-05 51.0 10.9 39 371-410 124-162 (337)
286 TIGR00708 cobA cob(I)alamin ad 93.1 1.6 3.5E-05 43.1 12.4 53 370-422 95-149 (173)
287 PF13173 AAA_14: AAA domain 93.1 0.77 1.7E-05 42.8 9.9 38 372-412 61-98 (128)
288 TIGR00595 priA primosomal prot 93.0 0.27 5.8E-06 57.2 8.0 92 453-545 7-100 (505)
289 TIGR02760 TraI_TIGR conjugativ 92.9 0.57 1.2E-05 62.8 11.8 63 246-314 1018-1084(1960)
290 TIGR02881 spore_V_K stage V sp 92.9 0.72 1.6E-05 48.8 10.6 16 263-278 43-58 (261)
291 PF00308 Bac_DnaA: Bacterial d 92.9 0.31 6.6E-06 50.2 7.5 48 370-417 95-144 (219)
292 PRK08769 DNA polymerase III su 92.8 0.75 1.6E-05 50.1 10.8 141 246-412 3-152 (319)
293 PF00004 AAA: ATPase family as 92.8 0.21 4.6E-06 46.1 5.8 17 372-388 58-74 (132)
294 PF05876 Terminase_GpA: Phage 92.8 0.2 4.3E-06 59.0 6.6 127 246-385 15-147 (557)
295 PLN03025 replication factor C 92.7 0.98 2.1E-05 49.3 11.6 40 371-412 98-137 (319)
296 PRK04195 replication factor C 92.7 0.82 1.8E-05 53.0 11.5 17 262-278 39-55 (482)
297 PRK07003 DNA polymerase III su 92.7 0.69 1.5E-05 55.4 10.8 52 502-561 242-295 (830)
298 TIGR01425 SRP54_euk signal rec 92.7 1.4 3E-05 49.9 12.8 132 264-425 102-236 (429)
299 PF05127 Helicase_RecD: Helica 92.6 0.054 1.2E-06 53.6 1.3 124 266-414 1-124 (177)
300 PRK14949 DNA polymerase III su 92.6 0.53 1.2E-05 57.3 9.8 44 371-416 118-161 (944)
301 PRK13342 recombination factor 92.5 0.79 1.7E-05 52.0 10.9 38 372-414 92-129 (413)
302 TIGR00580 mfd transcription-re 92.5 0.26 5.7E-06 61.1 7.5 98 447-544 476-579 (926)
303 TIGR03499 FlhF flagellar biosy 92.5 0.51 1.1E-05 50.6 8.8 17 262-278 194-210 (282)
304 PRK12726 flagellar biosynthesi 92.4 2.4 5.2E-05 47.1 13.8 131 261-424 205-339 (407)
305 COG1435 Tdk Thymidine kinase [ 92.3 0.92 2E-05 45.3 9.5 88 264-383 6-93 (201)
306 COG0470 HolB ATPase involved i 92.3 1.1 2.5E-05 48.5 11.5 40 370-410 107-146 (325)
307 PF02572 CobA_CobO_BtuR: ATP:c 92.3 3.1 6.6E-05 41.1 13.2 138 265-421 6-147 (172)
308 COG1474 CDC6 Cdc6-related prot 92.2 2.8 6E-05 46.7 14.4 16 263-278 43-58 (366)
309 PRK05986 cob(I)alamin adenolsy 92.2 0.53 1.1E-05 47.1 7.8 146 260-423 20-168 (191)
310 cd01122 GP4d_helicase GP4d_hel 92.1 0.42 9.1E-06 50.7 7.6 118 260-387 28-155 (271)
311 TIGR03689 pup_AAA proteasome A 92.0 0.92 2E-05 52.5 10.6 17 262-278 216-232 (512)
312 PRK14964 DNA polymerase III su 91.9 0.86 1.9E-05 52.5 10.2 45 370-416 114-158 (491)
313 COG3973 Superfamily I DNA and 91.9 1.2 2.6E-05 51.4 11.0 88 231-321 188-283 (747)
314 PRK14960 DNA polymerase III su 91.9 0.47 1E-05 56.0 8.1 42 371-414 117-158 (702)
315 PRK13833 conjugal transfer pro 91.9 0.44 9.5E-06 52.0 7.5 65 239-311 122-187 (323)
316 TIGR03015 pepcterm_ATPase puta 91.9 2.1 4.5E-05 45.2 12.7 32 247-278 23-59 (269)
317 PHA03368 DNA packaging termina 91.9 0.77 1.7E-05 53.9 9.6 137 259-415 251-392 (738)
318 PRK07994 DNA polymerase III su 91.8 1.8 3.8E-05 51.6 12.8 41 371-413 118-158 (647)
319 PRK06645 DNA polymerase III su 91.7 1.1 2.3E-05 52.1 10.7 18 263-280 44-61 (507)
320 COG0593 DnaA ATPase involved i 91.6 0.77 1.7E-05 51.4 9.0 49 372-420 175-225 (408)
321 PRK13341 recombination factor 91.5 1.2 2.5E-05 54.1 11.2 47 372-423 109-155 (725)
322 KOG0741 AAA+-type ATPase [Post 91.5 1.7 3.7E-05 49.4 11.4 57 219-278 210-272 (744)
323 TIGR02928 orc1/cdc6 family rep 91.5 1.1 2.5E-05 49.6 10.6 24 263-287 41-64 (365)
324 cd03115 SRP The signal recogni 91.4 3.1 6.7E-05 40.8 12.4 55 371-425 81-136 (173)
325 PRK08533 flagellar accessory p 91.3 1.8 3.8E-05 45.0 11.0 52 261-321 23-74 (230)
326 PRK14873 primosome assembly pr 91.2 0.6 1.3E-05 55.9 8.3 92 454-546 171-265 (665)
327 COG2109 BtuR ATP:corrinoid ade 91.1 1.7 3.7E-05 43.1 9.8 54 371-424 121-176 (198)
328 PF06733 DEAD_2: DEAD_2; Inte 91.1 0.15 3.2E-06 50.5 2.5 45 342-386 113-159 (174)
329 PRK09112 DNA polymerase III su 91.0 1.5 3.2E-05 48.6 10.6 40 370-410 139-178 (351)
330 KOG2028 ATPase related to the 91.0 0.8 1.7E-05 49.6 8.0 51 370-425 220-270 (554)
331 PRK13894 conjugal transfer ATP 90.9 0.59 1.3E-05 51.0 7.3 67 237-311 124-191 (319)
332 PRK14965 DNA polymerase III su 90.9 1.6 3.4E-05 51.7 11.4 44 370-415 117-160 (576)
333 COG4962 CpaF Flp pilus assembl 90.9 0.36 7.9E-06 52.2 5.4 60 244-312 154-214 (355)
334 TIGR03877 thermo_KaiC_1 KaiC d 90.9 0.66 1.4E-05 48.3 7.4 51 262-321 21-71 (237)
335 TIGR03881 KaiC_arch_4 KaiC dom 90.9 2.1 4.6E-05 44.1 11.1 51 261-320 19-69 (229)
336 PRK14961 DNA polymerase III su 90.9 1.5 3.2E-05 48.9 10.6 39 371-410 118-156 (363)
337 COG4626 Phage terminase-like p 90.8 1.4 3E-05 50.7 10.2 147 246-412 60-224 (546)
338 PRK14958 DNA polymerase III su 90.6 1.9 4.2E-05 50.1 11.6 39 371-410 118-156 (509)
339 cd00984 DnaB_C DnaB helicase C 90.6 0.72 1.6E-05 48.0 7.4 111 261-386 12-137 (242)
340 PF13177 DNA_pol3_delta2: DNA 90.6 0.76 1.6E-05 44.9 7.1 42 371-413 101-142 (162)
341 TIGR00959 ffh signal recogniti 90.6 2.7 5.9E-05 47.7 12.4 16 264-279 101-116 (428)
342 PRK10867 signal recognition pa 90.4 3.3 7.2E-05 47.0 12.9 16 264-279 102-117 (433)
343 PRK14955 DNA polymerase III su 90.4 2.5 5.4E-05 47.7 12.0 23 264-287 40-62 (397)
344 PRK14956 DNA polymerase III su 90.3 1.1 2.3E-05 51.4 8.8 16 265-280 43-58 (484)
345 KOG0739 AAA+-type ATPase [Post 90.2 3.9 8.5E-05 43.4 12.0 149 222-427 127-292 (439)
346 PF06745 KaiC: KaiC; InterPro 90.2 0.74 1.6E-05 47.4 7.0 133 262-413 19-160 (226)
347 PRK10689 transcription-repair 90.1 0.86 1.9E-05 58.0 8.7 98 447-544 625-728 (1147)
348 PF03796 DnaB_C: DnaB-like hel 90.0 2.7 5.9E-05 44.3 11.3 115 263-387 20-145 (259)
349 PRK08691 DNA polymerase III su 90.0 1.1 2.4E-05 53.4 8.8 40 370-410 117-156 (709)
350 COG3972 Superfamily I DNA and 89.9 1.4 3.1E-05 49.6 9.0 140 236-383 152-306 (660)
351 PRK12724 flagellar biosynthesi 89.9 3.2 6.9E-05 46.8 12.0 126 263-424 224-356 (432)
352 PRK09111 DNA polymerase III su 89.9 1.4 3E-05 52.3 9.6 40 370-410 130-169 (598)
353 COG0513 SrmB Superfamily II DN 89.6 3.5 7.7E-05 48.1 12.7 68 473-544 102-180 (513)
354 PF03969 AFG1_ATPase: AFG1-lik 89.5 6.2 0.00014 43.9 13.9 109 262-416 62-171 (362)
355 PRK14952 DNA polymerase III su 89.4 1.7 3.6E-05 51.4 9.8 44 370-415 116-159 (584)
356 PHA00729 NTP-binding motif con 89.4 2.9 6.3E-05 43.1 10.3 74 350-423 60-138 (226)
357 TIGR02525 plasmid_TraJ plasmid 89.3 0.95 2.1E-05 50.4 7.4 50 221-289 126-175 (372)
358 TIGR02782 TrbB_P P-type conjug 89.2 1.5 3.2E-05 47.5 8.5 66 238-311 109-175 (299)
359 PRK14959 DNA polymerase III su 89.2 1.3 2.7E-05 52.5 8.5 19 263-281 39-57 (624)
360 CHL00181 cbbX CbbX; Provisiona 89.2 2.1 4.5E-05 46.1 9.6 18 262-279 59-76 (287)
361 TIGR02524 dot_icm_DotB Dot/Icm 89.1 0.92 2E-05 50.3 7.1 49 221-288 111-159 (358)
362 PRK07471 DNA polymerase III su 89.1 1.9 4.2E-05 47.9 9.6 135 264-413 43-181 (365)
363 PF05729 NACHT: NACHT domain 89.0 2.2 4.8E-05 40.9 9.0 38 375-412 84-129 (166)
364 PRK06067 flagellar accessory p 89.0 10 0.00022 39.2 14.5 51 262-321 25-75 (234)
365 PHA03372 DNA packaging termina 88.9 8.7 0.00019 44.9 14.6 129 261-413 201-337 (668)
366 KOG0701 dsRNA-specific nucleas 88.9 0.32 6.9E-06 62.3 3.6 93 473-565 295-399 (1606)
367 PRK11823 DNA repair protein Ra 88.8 1.4 3.1E-05 50.4 8.5 51 262-321 80-130 (446)
368 PRK11034 clpA ATP-dependent Cl 88.8 3.8 8.3E-05 50.0 12.6 44 374-417 280-327 (758)
369 PRK10416 signal recognition pa 88.8 6.8 0.00015 42.8 13.4 134 262-425 114-256 (318)
370 TIGR02880 cbbX_cfxQ probable R 88.8 2.8 6E-05 45.0 10.3 18 262-279 58-75 (284)
371 PRK07414 cob(I)yrinic acid a,c 88.7 6.9 0.00015 38.8 12.0 53 370-422 113-167 (178)
372 PF05496 RuvB_N: Holliday junc 88.7 1.4 3E-05 45.3 7.3 15 264-278 52-66 (233)
373 TIGR02639 ClpA ATP-dependent C 88.6 5.6 0.00012 48.7 13.9 16 263-278 204-219 (731)
374 PRK14951 DNA polymerase III su 88.4 1.1 2.4E-05 53.1 7.5 45 370-416 122-166 (618)
375 PRK14957 DNA polymerase III su 88.4 6.2 0.00013 46.3 13.4 40 370-410 117-156 (546)
376 KOG0742 AAA+-type ATPase [Post 88.3 0.99 2.1E-05 49.6 6.3 16 263-278 385-400 (630)
377 PRK13900 type IV secretion sys 88.3 1.3 2.8E-05 48.7 7.5 44 259-311 157-200 (332)
378 PRK13851 type IV secretion sys 88.3 0.69 1.5E-05 50.9 5.3 45 258-311 158-202 (344)
379 KOG0738 AAA+-type ATPase [Post 88.3 2.7 5.8E-05 46.2 9.5 16 263-278 246-261 (491)
380 PRK00440 rfc replication facto 88.3 5.4 0.00012 43.1 12.4 38 372-410 102-139 (319)
381 KOG2543 Origin recognition com 88.2 7.1 0.00015 43.0 12.6 142 248-416 10-161 (438)
382 KOG0991 Replication factor C, 88.1 1.1 2.5E-05 45.7 6.2 41 371-412 112-152 (333)
383 PRK05563 DNA polymerase III su 88.1 2.7 5.9E-05 49.6 10.5 44 370-415 117-160 (559)
384 COG1198 PriA Primosomal protei 88.1 0.78 1.7E-05 55.1 5.9 92 452-544 226-319 (730)
385 COG1200 RecG RecG-like helicas 87.9 1.1 2.5E-05 52.4 6.9 88 457-544 298-390 (677)
386 PRK14954 DNA polymerase III su 87.9 3.4 7.5E-05 49.1 11.1 40 370-410 125-164 (620)
387 PF03237 Terminase_6: Terminas 87.8 4.7 0.0001 44.2 11.8 144 266-428 1-154 (384)
388 COG2909 MalT ATP-dependent tra 87.7 1.7 3.8E-05 52.1 8.3 43 372-414 129-171 (894)
389 PRK07940 DNA polymerase III su 87.7 3.6 7.8E-05 46.3 10.6 45 370-416 115-159 (394)
390 PRK14969 DNA polymerase III su 87.7 3.4 7.3E-05 48.4 10.8 40 370-410 117-156 (527)
391 COG0552 FtsY Signal recognitio 87.6 7.5 0.00016 42.2 12.3 129 265-424 142-280 (340)
392 TIGR03600 phage_DnaB phage rep 87.6 4.1 9E-05 46.3 11.3 116 261-386 193-319 (421)
393 PRK04841 transcriptional regul 87.5 2.8 6.2E-05 52.4 10.9 44 371-414 120-163 (903)
394 TIGR03346 chaperone_ClpB ATP-d 87.5 6 0.00013 49.3 13.4 16 263-278 195-210 (852)
395 COG1110 Reverse gyrase [DNA re 87.3 1.1 2.5E-05 54.4 6.5 62 469-530 124-191 (1187)
396 PRK14962 DNA polymerase III su 87.2 4.8 0.0001 46.4 11.5 16 264-279 38-53 (472)
397 KOG0058 Peptide exporter, ABC 87.2 1.5 3.2E-05 51.9 7.2 139 261-411 493-660 (716)
398 KOG0733 Nuclear AAA ATPase (VC 87.2 1.8 3.9E-05 50.0 7.7 53 223-278 506-561 (802)
399 cd01121 Sms Sms (bacterial rad 87.1 2.3 5E-05 47.4 8.7 51 262-321 82-132 (372)
400 PRK14963 DNA polymerase III su 87.1 1.6 3.6E-05 50.6 7.7 23 265-288 39-61 (504)
401 PRK08506 replicative DNA helic 86.8 3.7 8.1E-05 47.4 10.4 112 262-385 192-315 (472)
402 PRK05973 replicative DNA helic 86.8 2.7 5.8E-05 43.8 8.3 65 247-321 50-114 (237)
403 PF01443 Viral_helicase1: Vira 86.7 0.54 1.2E-05 48.5 3.2 14 265-278 1-14 (234)
404 KOG0741 AAA+-type ATPase [Post 86.6 7.2 0.00016 44.6 11.8 137 230-416 494-652 (744)
405 PRK14948 DNA polymerase III su 86.5 2.8 6E-05 50.1 9.3 25 263-288 39-63 (620)
406 PRK06904 replicative DNA helic 86.3 9.1 0.0002 44.2 13.2 116 262-387 221-349 (472)
407 PHA00012 I assembly protein 86.3 11 0.00023 41.1 12.5 56 371-426 80-140 (361)
408 PF01695 IstB_IS21: IstB-like 86.2 1.1 2.3E-05 44.7 4.9 50 256-314 41-90 (178)
409 PRK08699 DNA polymerase III su 86.0 6.2 0.00013 43.2 11.1 41 370-411 111-151 (325)
410 PRK14950 DNA polymerase III su 85.9 4.8 0.0001 47.9 11.0 41 370-412 118-158 (585)
411 PRK06964 DNA polymerase III su 85.9 4.6 0.0001 44.5 10.0 40 249-289 3-47 (342)
412 cd01126 TraG_VirD4 The TraG/Tr 85.8 0.58 1.2E-05 52.5 3.1 56 264-333 1-56 (384)
413 cd01128 rho_factor Transcripti 85.8 2.6 5.7E-05 44.2 7.8 20 259-278 13-32 (249)
414 PRK10865 protein disaggregatio 85.6 8.2 0.00018 48.1 13.1 16 263-278 200-215 (857)
415 TIGR00614 recQ_fam ATP-depende 85.6 2.3 4.9E-05 49.2 7.9 76 469-544 50-133 (470)
416 TIGR03878 thermo_KaiC_2 KaiC d 85.5 4.4 9.6E-05 42.8 9.4 37 261-305 35-71 (259)
417 PF02534 T4SS-DNA_transf: Type 85.3 0.88 1.9E-05 52.5 4.3 57 263-333 45-101 (469)
418 PRK13764 ATPase; Provisional 85.3 1.8 3.9E-05 51.0 6.9 26 261-287 256-281 (602)
419 PRK06871 DNA polymerase III su 85.2 6.2 0.00013 43.2 10.6 41 370-411 105-145 (325)
420 KOG1832 HIV-1 Vpr-binding prot 85.2 0.53 1.2E-05 55.7 2.4 11 29-39 1393-1403(1516)
421 PRK06620 hypothetical protein; 85.2 4.3 9.2E-05 41.6 8.9 106 301-416 17-126 (214)
422 TIGR00635 ruvB Holliday juncti 85.2 1.5 3.3E-05 47.4 5.9 16 263-278 31-46 (305)
423 cd03239 ABC_SMC_head The struc 85.2 1 2.2E-05 44.8 4.1 43 370-412 114-157 (178)
424 COG1485 Predicted ATPase [Gene 85.1 14 0.0003 40.5 12.8 116 255-417 53-175 (367)
425 TIGR00665 DnaB replicative DNA 85.1 4.9 0.00011 45.8 10.3 112 262-385 195-318 (434)
426 PRK04537 ATP-dependent RNA hel 85.1 4.2 9.2E-05 48.2 10.0 72 297-378 256-331 (572)
427 PRK04328 hypothetical protein; 84.8 5.4 0.00012 41.9 9.7 52 261-321 22-73 (249)
428 PTZ00454 26S protease regulato 84.7 3.6 7.9E-05 46.3 8.8 54 222-278 139-195 (398)
429 KOG3973 Uncharacterized conser 84.7 0.85 1.9E-05 48.5 3.4 26 618-643 429-454 (465)
430 cd00268 DEADc DEAD-box helicas 84.7 5 0.00011 40.2 9.1 71 470-544 69-149 (203)
431 PRK08451 DNA polymerase III su 84.6 5.6 0.00012 46.4 10.4 40 370-410 115-154 (535)
432 KOG1133 Helicase of the DEAD s 84.3 1.4 3E-05 51.5 5.2 42 247-288 15-60 (821)
433 TIGR01241 FtsH_fam ATP-depende 84.3 5.7 0.00012 46.2 10.5 54 222-278 49-104 (495)
434 PRK05748 replicative DNA helic 84.2 4.9 0.00011 46.1 9.7 114 262-385 203-327 (448)
435 PRK11634 ATP-dependent RNA hel 84.1 2.8 6E-05 50.3 7.9 72 469-544 73-155 (629)
436 CHL00095 clpC Clp protease ATP 84.1 6 0.00013 49.1 11.1 17 263-279 201-217 (821)
437 PRK05896 DNA polymerase III su 83.9 2.5 5.4E-05 49.8 7.2 24 263-287 39-62 (605)
438 KOG0745 Putative ATP-dependent 83.5 1.6 3.4E-05 48.5 4.9 27 261-289 225-251 (564)
439 COG5008 PilU Tfp pilus assembl 83.5 0.95 2.1E-05 47.1 3.1 44 223-286 106-150 (375)
440 TIGR00678 holB DNA polymerase 83.4 6.2 0.00013 39.3 9.0 25 264-289 16-40 (188)
441 TIGR03345 VI_ClpV1 type VI sec 83.3 12 0.00026 46.6 13.1 16 263-278 209-224 (852)
442 COG3267 ExeA Type II secretory 83.3 6.7 0.00014 41.0 9.1 23 258-280 46-69 (269)
443 PRK07399 DNA polymerase III su 83.3 6.4 0.00014 42.9 9.7 127 263-411 27-161 (314)
444 PRK13897 type IV secretion sys 83.2 1.2 2.6E-05 52.7 4.3 57 263-333 159-215 (606)
445 TIGR01243 CDC48 AAA family ATP 83.2 3.8 8.3E-05 50.2 8.8 22 263-286 488-509 (733)
446 KOG1513 Nuclear helicase MOP-3 83.1 1.1 2.3E-05 53.0 3.6 154 246-413 263-454 (1300)
447 PF00265 TK: Thymidine kinase; 83.1 1.4 3E-05 43.8 4.0 36 265-308 4-39 (176)
448 COG2804 PulE Type II secretory 83.1 1.9 4.1E-05 49.1 5.6 40 249-289 243-284 (500)
449 PRK07993 DNA polymerase III su 83.1 5.2 0.00011 44.0 8.9 41 370-411 106-146 (334)
450 PF01637 Arch_ATPase: Archaeal 82.9 4.9 0.00011 40.8 8.3 55 355-413 105-165 (234)
451 PRK06090 DNA polymerase III su 82.9 5.1 0.00011 43.7 8.6 42 370-412 106-147 (319)
452 TIGR01243 CDC48 AAA family ATP 82.7 5.5 0.00012 48.8 9.9 53 223-278 173-228 (733)
453 KOG0331 ATP-dependent RNA heli 82.7 4.8 0.0001 46.3 8.6 89 272-377 322-414 (519)
454 TIGR01420 pilT_fam pilus retra 82.7 3.4 7.4E-05 45.6 7.4 42 262-310 122-163 (343)
455 PRK09165 replicative DNA helic 82.7 6.5 0.00014 45.7 10.0 119 263-386 218-355 (497)
456 PRK10436 hypothetical protein; 82.6 2 4.3E-05 49.4 5.6 35 252-287 206-242 (462)
457 PRK08840 replicative DNA helic 82.6 13 0.00027 43.0 12.1 115 261-385 216-342 (464)
458 PF05707 Zot: Zonular occluden 82.4 3.3 7.2E-05 41.6 6.6 52 372-423 79-135 (193)
459 PRK08760 replicative DNA helic 82.0 8.5 0.00019 44.5 10.5 112 262-385 229-352 (476)
460 COG1197 Mfd Transcription-repa 81.9 3.6 7.8E-05 51.3 7.7 92 453-544 625-722 (1139)
461 TIGR02858 spore_III_AA stage I 81.8 8 0.00017 41.2 9.5 23 256-278 102-127 (270)
462 PRK08006 replicative DNA helic 81.8 14 0.0003 42.7 12.1 114 262-385 224-349 (471)
463 TIGR03880 KaiC_arch_3 KaiC dom 81.7 8.6 0.00019 39.4 9.6 51 262-321 16-66 (224)
464 PF13481 AAA_25: AAA domain; P 81.5 8.7 0.00019 38.1 9.3 61 261-323 31-94 (193)
465 PRK07004 replicative DNA helic 81.5 9.5 0.0002 43.9 10.7 116 261-386 212-338 (460)
466 PRK07133 DNA polymerase III su 81.4 2.6 5.6E-05 50.7 6.2 43 370-414 116-158 (725)
467 PRK05636 replicative DNA helic 81.4 11 0.00023 44.1 11.0 109 263-385 266-388 (505)
468 PRK11776 ATP-dependent RNA hel 81.3 4.3 9.3E-05 46.7 7.9 70 471-544 73-153 (460)
469 PF12846 AAA_10: AAA-like doma 81.2 4.3 9.4E-05 43.2 7.4 42 263-312 2-43 (304)
470 TIGR01389 recQ ATP-dependent D 81.0 3.9 8.4E-05 48.8 7.6 60 469-528 52-111 (591)
471 KOG0333 U5 snRNP-like RNA heli 81.0 6.2 0.00013 44.9 8.4 86 297-400 516-605 (673)
472 PRK11192 ATP-dependent RNA hel 80.9 6.8 0.00015 44.7 9.3 70 298-377 245-318 (434)
473 TIGR02237 recomb_radB DNA repa 80.9 12 0.00027 37.7 10.3 38 262-307 12-49 (209)
474 TIGR02012 tigrfam_recA protein 80.7 3.7 7.9E-05 44.8 6.6 43 261-311 54-96 (321)
475 COG1132 MdlB ABC-type multidru 80.6 2.9 6.3E-05 49.5 6.4 44 370-413 481-524 (567)
476 TIGR00767 rho transcription te 80.6 2.4 5.2E-05 47.3 5.2 18 261-278 167-184 (415)
477 TIGR03819 heli_sec_ATPase heli 80.5 3.6 7.9E-05 45.3 6.6 64 237-311 154-218 (340)
478 TIGR00763 lon ATP-dependent pr 80.5 20 0.00043 44.3 13.6 17 262-278 347-363 (775)
479 PRK06647 DNA polymerase III su 80.4 5.3 0.00011 47.2 8.2 43 370-414 117-159 (563)
480 PRK10590 ATP-dependent RNA hel 80.2 8.1 0.00017 44.5 9.6 70 298-377 245-318 (456)
481 PRK14701 reverse gyrase; Provi 80.2 4.2 9.1E-05 53.7 7.9 60 470-529 122-187 (1638)
482 PRK06321 replicative DNA helic 80.2 12 0.00025 43.3 10.8 112 263-386 227-350 (472)
483 TIGR00631 uvrb excinuclease AB 80.2 21 0.00047 42.9 13.4 117 296-422 440-562 (655)
484 PRK06305 DNA polymerase III su 80.1 12 0.00026 43.0 10.8 37 371-408 120-156 (451)
485 COG0210 UvrD Superfamily I DNA 80.0 3.6 7.9E-05 49.6 7.0 71 247-323 2-72 (655)
486 cd01130 VirB11-like_ATPase Typ 79.9 3.7 8E-05 40.9 5.9 32 247-278 9-41 (186)
487 PRK03992 proteasome-activating 79.6 6.8 0.00015 44.1 8.6 16 263-278 166-181 (389)
488 CHL00176 ftsH cell division pr 79.6 9.4 0.0002 45.7 10.1 16 263-278 217-232 (638)
489 PHA00350 putative assembly pro 79.5 14 0.00029 41.6 10.6 23 265-287 4-27 (399)
490 PF14516 AAA_35: AAA-like doma 79.4 20 0.00043 39.4 11.9 40 249-289 17-57 (331)
491 PTZ00110 helicase; Provisional 79.3 10 0.00022 44.7 10.3 72 297-378 376-451 (545)
492 PRK07413 hypothetical protein; 79.2 8.2 0.00018 42.9 8.7 53 371-423 304-359 (382)
493 PRK09354 recA recombinase A; P 79.2 5.8 0.00012 43.7 7.5 42 262-311 60-101 (349)
494 PRK09376 rho transcription ter 78.9 9 0.0002 42.8 8.9 26 261-287 168-193 (416)
495 TIGR02538 type_IV_pilB type IV 78.9 2.9 6.3E-05 49.4 5.5 38 249-287 301-340 (564)
496 KOG0060 Long-chain acyl-CoA tr 78.9 2 4.4E-05 49.4 4.0 47 354-401 571-617 (659)
497 KOG0740 AAA+-type ATPase [Post 78.8 8.5 0.00018 43.4 8.7 79 372-467 245-336 (428)
498 PRK04837 ATP-dependent RNA hel 78.6 8.6 0.00019 43.7 9.2 72 298-379 255-330 (423)
499 cd01129 PulE-GspE PulE/GspE Th 78.5 4.6 9.9E-05 42.9 6.4 37 250-287 66-104 (264)
500 cd03221 ABCF_EF-3 ABCF_EF-3 E 78.5 12 0.00026 35.6 8.7 40 370-412 86-125 (144)
No 1
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-125 Score=1000.27 Aligned_cols=698 Identities=60% Similarity=0.923 Sum_probs=628.8
Q ss_pred CCCccccccccccccccccchhcccCCcccccCCCCCCCCCCCCCCcccCcc----cccchhhhhcCCCCCCCCcccCCc
Q 003881 1 MTKRKFGFEGFNINRQTSYSFEQSQAPQRLYVPPSSRYSHDNYEDTDLDNID----YEDNDAAKAANDTGNGAEKEEIDP 76 (789)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~ed~e~~~~~~~~~~~~ede~d~ 76 (789)
|+.|+|||+||+.+|+.+|+|+++++|+++|+|++++.+- +.++.+-..++ .||||+.++.+......+.||+|+
T Consensus 1 l~~r~~g~~g~~rn~~ts~~~e~s~~~~~~y~~~s~yg~~-~~~~~~rk~i~ddey~eddd~p~~~s~~~a~~~~de~d~ 79 (731)
T KOG0339|consen 1 LSNRKFGMEGFGRNRQTSYSFERSQAPQRLYVPPSSYGGD-NSEDADRKNIDDDEYEEDDDIPEGGSAAAAGGEVDEIDP 79 (731)
T ss_pred CCccCCCCCCCCcCcccccchhhhcCccceecChhhcCCC-chhhhhhhcccccccccccccccccchhhccCCCCCCCC
Confidence 7899999999999999999999999999999999887763 22222222222 223333333344556678889999
Q ss_pred hhHHhhhhHHHhhcCCCCCCcccccccC------------CCCCCchhHHHHHhhhhcCchhhhhhhhcCCCChHHHHHH
Q 003881 77 LDAFMEGIHEEMRAAPPPKPKEKLERYK------------DDDEEDPMESFLMAKKDVGLTLAADALRAGYDSDEEVYAA 144 (789)
Q Consensus 77 ~d~~~~~l~~~~~~~~~~~~~~~~~~~~------------~~~eed~~e~~~~~~~~~~~~~~~~~~~~g~~~~ee~~~~ 144 (789)
+|+||+.+++++.+.+++..+++.+..+ |.++++..+.+++++.+. ..+| .
T Consensus 80 ldafMA~~~d~~~sd~~~~e~kk~eRkn~dd~~p~~~vr~dI~~e~aae~~~kym~e~--------k~~~---------~ 142 (731)
T KOG0339|consen 80 LDAFMAKIEDQAQSDKKPLEQKKKERKNDDDDDPTATVRADIDEEDAAEALFKYMSEN--------KRAG---------A 142 (731)
T ss_pred cchhhhhhhhhhhccCCccchHHHhhhccCCCccchhhhcchhhHHhHHHHHHHhhhc--------ccch---------h
Confidence 9999999999998877655544433333 223344555555554331 1222 2
Q ss_pred HhhhccCCCCCCCCCChhhhhhhccCCCCCCCCCccccCccccccccCChhhcCCCHHHHHHHHHHcCceeccCCCCCCC
Q 003881 145 AKAVDAGMLDYDSDDNPVVVEKKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPV 224 (789)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~k~fy~~~~~i~~~s~~~~~~~r~~~~i~v~~~~~P~pi 224 (789)
+++.+...++||+++|++...|+.++|+++++|+.|+|.||+++||.+|..|..|+..+...++..+++++.+..+|+|+
T Consensus 143 ~~e~~~~~leydsd~nPi~~~kr~idpl~~idhs~i~y~p~~kdfy~e~esI~gl~~~d~~~~r~~Lnlrv~g~s~~rpv 222 (731)
T KOG0339|consen 143 AKECDDMCLEYDSDGNPIAPDKRQIDPLPPIDHSEIDYEPFNKDFYEEHESIEGLTKMDVIDLRLTLNLRVSGSSPPRPV 222 (731)
T ss_pred hhhcccceeecCCCCCccCcccccCCCCCCcchhhccccccccccccChhhhhccccccchhhHhhhcceeccCCCCCCc
Confidence 34445677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEE
Q 003881 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (789)
Q Consensus 225 ~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl 304 (789)
++|++++++..|+.++.+..|.+|||+|++++|..++|+|++.+|.||||||.+|++|++.|++.++++..+++|..|||
T Consensus 223 tsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vil 302 (731)
T KOG0339|consen 223 TSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVIL 302 (731)
T ss_pred chhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchh
Q 003881 305 APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM 384 (789)
Q Consensus 305 ~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m 384 (789)
||||+||.||+.++++|++.++++++++|||.+.++|+..|+.++.||||||+||+++++.+.+++.+++|||||||++|
T Consensus 303 vPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrm 382 (731)
T KOG0339|consen 303 VPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRM 382 (731)
T ss_pred eccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHHHHHhc
Q 003881 385 FDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKL 464 (789)
Q Consensus 385 ~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L 464 (789)
+++||+++++.|..++++++|+|+||||++..++.+++.+|.+|+.+..+.....+.+|+|.+.++++...|+.||+..|
T Consensus 383 fdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L 462 (731)
T KOG0339|consen 383 FDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHL 462 (731)
T ss_pred hccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEE
Q 003881 465 PGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN 544 (789)
Q Consensus 465 ~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~ 544 (789)
.+....|++|||+..+..++.|+..|+..++.|..+||+|.|.+|.++|..|+++.+.|||+||+++|||||+.+++|||
T Consensus 463 ~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvn 542 (731)
T KOG0339|consen 463 VEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVN 542 (731)
T ss_pred hhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHHHHHHcCCCccHHHHHHHHhcCcccccccccCCCCCC
Q 003881 545 FDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGRFRSKRDARKGGGKK 624 (789)
Q Consensus 545 ~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~l~~~~q~vp~~l~~~a~~~~~~~~~~~~r~~g~~~ 624 (789)
||+..+++.|+|||||+||+|. .|++|+|+++.|..++..||+.|+.++|.||++|++|||+..||+.+|.++++|+++
T Consensus 543 yD~ardIdththrigrtgRag~-kGvayTlvTeKDa~fAG~LVnnLe~agQnVP~~l~dlamk~s~fr~~r~~~g~gk~~ 621 (731)
T KOG0339|consen 543 YDFARDIDTHTHRIGRTGRAGE-KGVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDELMDLAMKSSWFRSSRFGRGGGKKG 621 (731)
T ss_pred ccccchhHHHHHHhhhcccccc-cceeeEEechhhHHHhhHHHHHHhhccccCChHHHHHHhhhhhhhhhhccCCCCCCC
Confidence 9999999999999999999995 599999999999999999999999999999999999999999999999888777765
Q ss_pred CCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCC-CCCchhhhhhhHHHHHHhhhcccccccCCCCCCCCCCCCCCcCCCC
Q 003881 625 GKGRGGAGRGVRGVDFGLGIGYTPESNNTSSQS-VPSRSAAVNSLKTGMMTQFRSNFVAASSNTPSEGFNNSASAYANKR 703 (789)
Q Consensus 625 g~g~gggg~g~~g~~~g~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (789)
. +||||.|+|+.+ |+|+|+.++++..++++ .|++|-..++|++||++||+++|||++.++++.. +++++|
T Consensus 622 ~--~~~gglgyr~~~-g~g~~~~g~~~~t~~~a~~ps~~gr~~~~r~af~~q~~~~f~a~t~sn~~~q------~~~~~~ 692 (731)
T KOG0339|consen 622 T--GGGGGLGYREKD-GLGIGFRGGSNRTPSSAASPSTSGRITAMRTAFQSQFKNSFVAATPSNPPNQ------AAPKKR 692 (731)
T ss_pred C--CCCCCcccccCC-CCCccccCCCCcCcccccCCCcchhHHHHHHHHHHHhhhheeccCCCCCccc------cccCCC
Confidence 4 334478888876 88888999888888764 5666667899999999999999999999876654 489999
Q ss_pred ccccccccCCccccCCCCccccccc
Q 003881 704 PALRGFVSGGSIGGDVNGTQTTGLT 728 (789)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (789)
|.+. +||+.|||++.++|..+..
T Consensus 693 p~~~--v~~~~~~~~~~~~q~~s~~ 715 (731)
T KOG0339|consen 693 PELG--VSGAPIGGPSARTQGQSAS 715 (731)
T ss_pred Cccc--eecCccCCcchhccccCCC
Confidence 9998 9999999999999877655
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-80 Score=682.78 Aligned_cols=426 Identities=50% Similarity=0.818 Sum_probs=397.1
Q ss_pred cccCccccccccCChhhcCCCHHHHHHHHHHcCceeccCC-CCCCCCCccc-----------------------------
Q 003881 180 IDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFD-VPRPVKTFED----------------------------- 229 (789)
Q Consensus 180 ~~~~~f~k~fy~~~~~i~~~s~~~~~~~r~~~~i~v~~~~-~P~pi~sf~~----------------------------- 229 (789)
..+.+|.+.||.+++....+...+....+.+..+.+.+.. +|.|+.+|+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 95 (519)
T KOG0331|consen 16 LDLSPFDKNFYKEHPSVKKRGSAEVERKRKKNEITVKGGDSVPKPVKSFEESGFPAKVLEEIPKLSRSSGESDSSAAFQE 95 (519)
T ss_pred cccCcccccccccccccccccccccccccCcceeeccCCCCCCCCccchhcccCCccccccccccccccccCCcchhhhc
Confidence 4568899999999988888888888888888888888766 8888666554
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhc-CccccccCCCeEEEEcCcH
Q 003881 230 CGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMD-QPELQKEEGPIGVICAPTR 308 (789)
Q Consensus 230 ~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~-~~~~~~~~gp~vLIl~Ptr 308 (789)
++|++.+...++..||..|||||+++||+++.|+|++.+|.||||||++|+||++.|+.. ++...+.++|++|||+|||
T Consensus 96 ~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTR 175 (519)
T KOG0331|consen 96 LGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTR 175 (519)
T ss_pred ccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcH
Confidence 455666677788999999999999999999999999999999999999999999999998 6777888899999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCC
Q 003881 309 ELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG 388 (789)
Q Consensus 309 eLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~ 388 (789)
|||.|+..++.++.....++++|+|||.+...|...+.++++|+|+||++|+++++...+.|+++.|+||||||+|++++
T Consensus 176 ELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmG 255 (519)
T KOG0331|consen 176 ELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMG 255 (519)
T ss_pred HHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhhc-CCCceEEEEeccCcHHHHHHHHHHhCCCeEEeecccc--CcccceeEEEEecCCCcccHHHHHHhcC
Q 003881 389 FEPQIRSIVGQI-RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVG--MANEDITQVVHVIPSDAEKLPWLLEKLP 465 (789)
Q Consensus 389 f~~~i~~il~~l-~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~--~~~~~i~q~~~~~~~~~~k~~~L~~~L~ 465 (789)
|+++++.|+..+ ++.+|+||+|||+|..++.++..|+.+|+.+.++... .++.+|.|++..+. ...|...|..+|.
T Consensus 256 Fe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~-~~~K~~~l~~lL~ 334 (519)
T KOG0331|consen 256 FEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCD-ETAKLRKLGKLLE 334 (519)
T ss_pred cHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcC-HHHHHHHHHHHHH
Confidence 999999999999 7778999999999999999999999999999998664 67889999999987 7778888888777
Q ss_pred CCC--CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEE
Q 003881 466 GMI--DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVV 543 (789)
Q Consensus 466 ~~~--~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI 543 (789)
... ..++|||||+++..|++|+..|...++++..|||+.+|.+|+.+|+.|++|++.|||||++|+||||||+|++||
T Consensus 335 ~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVI 414 (519)
T KOG0331|consen 335 DISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVI 414 (519)
T ss_pred HHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEE
Confidence 664 567999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHHHHHHcCCCccHHHHHHHHh
Q 003881 544 NFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMK 607 (789)
Q Consensus 544 ~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~l~~~~q~vp~~l~~~a~~ 607 (789)
|||+|.++++|+||+|||||+| +.|++++|++..+...+..+++.|+.++|.||+.|..++..
T Consensus 415 nydfP~~vEdYVHRiGRTGRa~-~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~~~~~ 477 (519)
T KOG0331|consen 415 NYDFPNNVEDYVHRIGRTGRAG-KKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLEYARV 477 (519)
T ss_pred eCCCCCCHHHHHhhcCccccCC-CCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHHHHhh
Confidence 9999999999999999999999 68999999999999999999999999999999999998764
No 3
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-78 Score=625.27 Aligned_cols=433 Identities=42% Similarity=0.693 Sum_probs=402.7
Q ss_pred CCCCccccCccccccccCChhhcCCCHHHHHHHHHHc-Cceec------cCCCCCCCCCccc-CCCCHHHHHHHHHcCCC
Q 003881 175 LDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSL-AIRVS------GFDVPRPVKTFED-CGFSTQLMHAISKQGYE 246 (789)
Q Consensus 175 ~~~~~~~~~~f~k~fy~~~~~i~~~s~~~~~~~r~~~-~i~v~------~~~~P~pi~sf~~-~~l~~~l~~~l~~~g~~ 246 (789)
....|.+.+|..|+||.++++.++|+..++..++++. .|.+. ...+|+|..+|++ +...+.++++|++.||.
T Consensus 162 e~~kW~~lpPi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFq 241 (629)
T KOG0336|consen 162 EKFKWAKLPPIKKNFYKESNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQ 241 (629)
T ss_pred hhcccccCCchhhhhhhcCchhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCC
Confidence 3446777889999999999999999999999999877 55543 2468999999998 47889999999999999
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccc-cccCCCeEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003881 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPEL-QKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (789)
Q Consensus 247 ~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~-~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~ 325 (789)
+|||||.|+||++|+|.|++++|.||+|||++||+|.+.|+..++.. ...++|.+|+++|||+||.|+.-++.++.- .
T Consensus 242 KPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysy-n 320 (629)
T KOG0336|consen 242 KPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSY-N 320 (629)
T ss_pred CCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhh-c
Confidence 99999999999999999999999999999999999999999887643 346789999999999999999999988754 4
Q ss_pred CCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcCCCce
Q 003881 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405 (789)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q 405 (789)
+++.+|+|||.+..+++..++.+.+|+|+||++|.++...+.++|..+.||||||||+|+||+|+++|++|+-.++|++|
T Consensus 321 g~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRq 400 (629)
T KOG0336|consen 321 GLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQ 400 (629)
T ss_pred CcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCcHHHHHHHHHHhCCCeEEeeccccCc-ccceeEEEEecCCCcccHHHHHHhcCCCCCCCCEEEEecccccHH
Q 003881 406 TLLFSATMPRKVEKLAREILSDPVRVTVGEVGMA-NEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVD 484 (789)
Q Consensus 406 ~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~-~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~ 484 (789)
++|.|||||..+..|+..|+.+|..+.++..... ...+.|.+ .+..+..|+..+..++.......++||||..+..++
T Consensus 401 tvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i-~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD 479 (629)
T KOG0336|consen 401 TVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNI-IVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMAD 479 (629)
T ss_pred eeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeE-EecccHHHHHHHHHHHHhcCCCceEEEEEechhhhh
Confidence 9999999999999999999999999999988754 56677777 777788898888888887778889999999999999
Q ss_pred HHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCC
Q 003881 485 EIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRA 564 (789)
Q Consensus 485 ~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~ 564 (789)
.|...|.-.|+.+..|||+..|.+|+.+++.|++|+++|||||++++||||+++++||+|||+|.+++.|+||+||+||+
T Consensus 480 ~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRa 559 (629)
T KOG0336|consen 480 HLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRA 559 (629)
T ss_pred hccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEEccccHHHHHHHHHHHHHcCCCccHHHHHHHHhcCc
Q 003881 565 GDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGR 610 (789)
Q Consensus 565 G~k~G~~i~lv~~~d~~~~~~lv~~l~~~~q~vp~~l~~~a~~~~~ 610 (789)
| ++|++++|++.+|...+.+|+++|+++.|.||++|..+|.+-..
T Consensus 560 G-r~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL~~mAeryk~ 604 (629)
T KOG0336|consen 560 G-RTGTSISFLTRNDWSMAEELIQILERAEQEVPDELVRMAERYKL 604 (629)
T ss_pred C-CCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHh
Confidence 9 78999999999999999999999999999999999999975433
No 4
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.7e-78 Score=689.90 Aligned_cols=437 Identities=49% Similarity=0.802 Sum_probs=422.4
Q ss_pred cCCCCCCCCCccccCccccccccCChhhcCCCHHHHHHHHHHcC-ceeccCCCCCCCCCcccCCCCHHHHHHHHHcCCCC
Q 003881 169 IEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLA-IRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEK 247 (789)
Q Consensus 169 ~~~~~~~~~~~~~~~~f~k~fy~~~~~i~~~s~~~~~~~r~~~~-i~v~~~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ 247 (789)
...+..++|+.+.|+||+++||.+.++|..|+..++..++..+. |.+.+..+|+|+.+|.++++...++..+++.||.+
T Consensus 308 ~~~~~~~~~S~~~~epFRknfy~e~~di~~ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k 387 (997)
T KOG0334|consen 308 KKNLIQVDHSKISYEPFRKNFYIEVRDIKRMSAAEVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEK 387 (997)
T ss_pred ccceeecccccccchhhhhcccccchhHHHHHHHHHHHhhcCccceeeccCCCCcccchHhhCCchHHHHHHHHHhcCCC
Confidence 33677899999999999999999999999999999999999996 99999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCC
Q 003881 248 PTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGI 327 (789)
Q Consensus 248 ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i 327 (789)
|||||.+|||+|++|||||++|.||||||++|+||++.|++.++.+....||.+|||+|||+||.||++++++|++.+++
T Consensus 388 ~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~i 467 (997)
T KOG0334|consen 388 PTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGI 467 (997)
T ss_pred CcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhc---ccccCceeEEEEeccchhccCCChHHHHHHHhhcCCCc
Q 003881 328 RVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK---ALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR 404 (789)
Q Consensus 328 ~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~---~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~ 404 (789)
+++++|||....+++..+++++.|+||||+++++++..+ ..+|.++.+||+||||+|++++|.+++..|+..+++++
T Consensus 468 r~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdr 547 (997)
T KOG0334|consen 468 RVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDR 547 (997)
T ss_pred eEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchhh
Confidence 999999999999999999999999999999999998654 45677888999999999999999999999999999999
Q ss_pred eEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHHHHHhcCCCCCCCCEEEEecccccHH
Q 003881 405 QTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVD 484 (789)
Q Consensus 405 q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~ 484 (789)
|+++||||+|+.++.+++..+..|+.+.++.....+..+.|.+.++.....|+..|+++|......+++||||..+..|+
T Consensus 548 QtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d 627 (997)
T KOG0334|consen 548 QTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKAD 627 (997)
T ss_pred hhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHH
Confidence 99999999999999999999999999999999999999999999999889999999999999888999999999999999
Q ss_pred HHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCC
Q 003881 485 EIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRA 564 (789)
Q Consensus 485 ~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~ 564 (789)
.|...|.+.++.|..|||+.++.+|..+++.|+++.+.+||||++++||||++.+.+|||||+|....+|+||+|||||+
T Consensus 628 ~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgra 707 (997)
T KOG0334|consen 628 ALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRA 707 (997)
T ss_pred HHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEEccccHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 003881 565 GDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAM 606 (789)
Q Consensus 565 G~k~G~~i~lv~~~d~~~~~~lv~~l~~~~q~vp~~l~~~a~ 606 (789)
| +.|.|++|+++.+..++.+|+++|+.+++.+|..|..+..
T Consensus 708 g-rkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P~~l~~l~~ 748 (997)
T KOG0334|consen 708 G-RKGAAVTFITPDQLKYAGDLCKALELSKQPVPKLLQALSE 748 (997)
T ss_pred C-ccceeEEEeChHHhhhHHHHHHHHHhccCCCchHHHHHHH
Confidence 9 6799999999999999999999999999999988887765
No 5
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.3e-76 Score=631.26 Aligned_cols=493 Identities=38% Similarity=0.609 Sum_probs=421.5
Q ss_pred ccCCCCCCchhHHHH-HhhhhcCchhhhhhhhcCCCChHHHHHHHhhhccCCCCCCCCCChhhhhhhccCCCCCCCCCcc
Q 003881 102 RYKDDDEEDPMESFL-MAKKDVGLTLAADALRAGYDSDEEVYAAAKAVDAGMLDYDSDDNPVVVEKKKIEPIPALDHSLI 180 (789)
Q Consensus 102 ~~~~~~eed~~e~~~-~~~~~~~~~~~~~~~~~g~~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (789)
+.+++..||-...+. -+......++++++..+|.|..++..+.++..+....-..+++.+...+.-...+.+. ...
T Consensus 128 ~fdWda~edT~~d~~~l~~~~~~i~~fgrG~~ag~d~~~qkk~~s~~~~~~e~r~t~~~ke~~~~~~qk~~k~~---~k~ 204 (673)
T KOG0333|consen 128 VFDWDASEDTSNDYNPLYSSRHDIQLFGRGFVAGIDVKEQKKEKSKYGEMMEKRRTEDEKEQEEELLQKVCKKE---AKS 204 (673)
T ss_pred EEeecccccccccchhhhcCcccchhhccccccccchHHHHhhhhhhhhHhhhhcchhhhhhHHHHHHHhhhhh---hhc
Confidence 456666555332221 1222234567899999999988887665553222111111111111111000011111 112
Q ss_pred ccCccccccccCChhhcCCCHHHHHHHHHHcCceeccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHH
Q 003881 181 DYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIIL 260 (789)
Q Consensus 181 ~~~~f~k~fy~~~~~i~~~s~~~~~~~r~~~~i~v~~~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il 260 (789)
.|+ .+ .|.+. .+..|++.+|..|+..+.|.++|..+|.|+++|++.+||..+++.|.+.||..|+|||.++||.++
T Consensus 205 ~~D--dr-hW~~k-~l~Em~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~l 280 (673)
T KOG0333|consen 205 GWD--DR-HWSEK-VLAEMTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGL 280 (673)
T ss_pred ccc--cc-chhhh-hHHhcCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchh
Confidence 222 22 24332 478899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccc----cCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCC
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQK----EEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGM 336 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~----~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~ 336 (789)
+.+|+|++|+||||||++|++|++.+|...|++.. ..||.++||+|||+||+||.++..+|++.++++++.++||.
T Consensus 281 Q~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~ 360 (673)
T KOG0333|consen 281 QNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGL 360 (673)
T ss_pred ccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEeccc
Confidence 99999999999999999999999999998885543 46899999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcCC--------------
Q 003881 337 SKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP-------------- 402 (789)
Q Consensus 337 ~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~-------------- 402 (789)
+..++-..+..+|+|+|+||++|++.|.+.++.|..+.+||+||||+|+|++|++++..+|.+++.
T Consensus 361 s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~ 440 (673)
T KOG0333|consen 361 SFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEE 440 (673)
T ss_pred chhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred -----------CceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHHHHHhcCCCCCCC
Q 003881 403 -----------DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDG 471 (789)
Q Consensus 403 -----------~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~ 471 (789)
-+|++|||||+|+.++.|++.|+.+|+.++++..+...+.+.|.++++.. ..|+..|+++|... ...
T Consensus 441 ~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~e-d~k~kkL~eil~~~-~~p 518 (673)
T KOG0333|consen 441 RVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSE-DEKRKKLIEILESN-FDP 518 (673)
T ss_pred HHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecc-hHHHHHHHHHHHhC-CCC
Confidence 17999999999999999999999999999999999999999999999965 45699999999876 456
Q ss_pred CEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEcCCCCH
Q 003881 472 DVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDM 551 (789)
Q Consensus 472 kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~ 551 (789)
++|||+|+++.|+.|++.|.+.+++|..|||+.+|++|+.+|..|++|...|||||++++||||||+|.+|||||++.++
T Consensus 519 piIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksi 598 (673)
T KOG0333|consen 519 PIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSI 598 (673)
T ss_pred CEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHHHHH-HcCCCccHHHHHH
Q 003881 552 DMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLI-AAGQNVSMELMDL 604 (789)
Q Consensus 552 ~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~l~-~~~q~vp~~l~~~ 604 (789)
++|+||||||||+| +.|++++|+++.|...+.+|+..|. ......|++|...
T Consensus 599 eDYtHRIGRTgRAG-k~GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~Ela~h 651 (673)
T KOG0333|consen 599 EDYTHRIGRTGRAG-KSGTAISFLTPADTAVFYDLKQALRESVKSHCPPELANH 651 (673)
T ss_pred HHHHHHhccccccc-cCceeEEEeccchhHHHHHHHHHHHHhhhccCChhhccC
Confidence 99999999999999 7899999999999999999999887 5567788887654
No 6
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=4e-73 Score=656.12 Aligned_cols=438 Identities=47% Similarity=0.748 Sum_probs=407.0
Q ss_pred cCCCCCCCCCccccCccccccccCChhhcCCCHHHHHHHHHHcCcee-ccCCCCCCCCCcccCCCCHHHHHHHHHcCCCC
Q 003881 169 IEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRV-SGFDVPRPVKTFEDCGFSTQLMHAISKQGYEK 247 (789)
Q Consensus 169 ~~~~~~~~~~~~~~~~f~k~fy~~~~~i~~~s~~~~~~~r~~~~i~v-~~~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ 247 (789)
.+.++.++|+...+.||.|+||.+++.+..++.+++..+++...|.+ .+..+|+|+.+|++++|++.+++.|.+.||.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~ 152 (545)
T PTZ00110 73 GKRLQPIDWKSINLVPFEKNFYKEHPEVSALSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFTE 152 (545)
T ss_pred ccccCCCCCccccccchhhhcccCChhhhcCCHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCC
Confidence 34577888988899999999999999999999999999999998886 68899999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCC
Q 003881 248 PTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGI 327 (789)
Q Consensus 248 ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i 327 (789)
|||+|.++||.+++|+|+|++++||||||++|++|++.+++.++......+|.+|||+|||+||.|+.++++++....++
T Consensus 153 pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i 232 (545)
T PTZ00110 153 PTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKI 232 (545)
T ss_pred CCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCc
Confidence 99999999999999999999999999999999999999998876665667899999999999999999999999988899
Q ss_pred eEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEE
Q 003881 328 RVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTL 407 (789)
Q Consensus 328 ~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~l 407 (789)
++.+++||.....+...+..+++|||+||++|++++......|.++++|||||||+|++++|..++..++..+++++|++
T Consensus 233 ~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l 312 (545)
T PTZ00110 233 RNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTL 312 (545)
T ss_pred cEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEE
Confidence 99999999999999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred EEeccCcHHHHHHHHHHhC-CCeEEeecccc-CcccceeEEEEecCCCcccHHHHHHhcCCCC-CCCCEEEEecccccHH
Q 003881 408 LFSATMPRKVEKLAREILS-DPVRVTVGEVG-MANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVD 484 (789)
Q Consensus 408 l~SAT~~~~i~~l~~~~l~-~p~~i~i~~~~-~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~ 484 (789)
+||||+|..++.+++.++. +|+.+.++... .....+.+.+..+. ...|...|..+|.... ...++||||+++..|+
T Consensus 313 ~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~-~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~ 391 (545)
T PTZ00110 313 MWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVE-EHEKRGKLKMLLQRIMRDGDKILIFVETKKGAD 391 (545)
T ss_pred EEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEe-chhHHHHHHHHHHHhcccCCeEEEEecChHHHH
Confidence 9999999999999999986 58888776654 34566777776664 4567777777776654 5669999999999999
Q ss_pred HHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCC
Q 003881 485 EIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRA 564 (789)
Q Consensus 485 ~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~ 564 (789)
.|+..|...++.+..+||++++.+|..+++.|++|+++|||||++++||||||+|++|||||+|.++..|+||+||+||.
T Consensus 392 ~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~ 471 (545)
T PTZ00110 392 FLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRA 471 (545)
T ss_pred HHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEEccccHHHHHHHHHHHHHcCCCccHHHHHHHHhc
Q 003881 565 GDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMKD 608 (789)
Q Consensus 565 G~k~G~~i~lv~~~d~~~~~~lv~~l~~~~q~vp~~l~~~a~~~ 608 (789)
| +.|.|++|+++.+...+.+|++.|..++|.||++|++++...
T Consensus 472 G-~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~~~~~ 514 (545)
T PTZ00110 472 G-AKGASYTFLTPDKYRLARDLVKVLREAKQPVPPELEKLSNER 514 (545)
T ss_pred C-CCceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHHHHHHh
Confidence 9 679999999999999999999999999999999999998754
No 7
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2.9e-73 Score=584.73 Aligned_cols=424 Identities=43% Similarity=0.676 Sum_probs=400.7
Q ss_pred ccccCccccccccCChhhcCCCHHHHHHHHHHcCceeccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH
Q 003881 179 LIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPI 258 (789)
Q Consensus 179 ~~~~~~f~k~fy~~~~~i~~~s~~~~~~~r~~~~i~v~~~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~ 258 (789)
-|.|+..-+.-|.++-.|..|++++.+..|+.+.|.+.|..+|+|+.+|.++.+|..+++.|++.|+.+|||||.|.||.
T Consensus 124 Gi~Y~ePi~T~WkPP~hir~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPv 203 (610)
T KOG0341|consen 124 GITYEEPIKTAWKPPRHIRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPV 203 (610)
T ss_pred CCcccCcchhccCCcHHHHHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcce
Confidence 46677777778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCEEEEccCCChhhHHHHHHHHHHHhcCc---cccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhc------CCeE
Q 003881 259 ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQP---ELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH------GIRV 329 (789)
Q Consensus 259 il~grdvll~a~TGsGKTla~llpil~~l~~~~---~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~------~i~v 329 (789)
+++|||+|.+|-||||||++|+||++...+.+. +.....||..|||||+|+||.|+++.+..++..+ .+++
T Consensus 204 vLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs 283 (610)
T KOG0341|consen 204 VLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRS 283 (610)
T ss_pred EeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhh
Confidence 999999999999999999999999999888753 3456789999999999999999999999887654 3788
Q ss_pred EEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEE
Q 003881 330 SAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLF 409 (789)
Q Consensus 330 ~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~ 409 (789)
.++.||.+..+|...++.+.+|+|+||++|.+++.++...|.-+.||++||||+|+|+||+..++.|+..+...||+++|
T Consensus 284 ~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLF 363 (610)
T KOG0341|consen 284 LLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLF 363 (610)
T ss_pred hhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHH
Q 003881 410 SATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQ 489 (789)
Q Consensus 410 SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~ 489 (789)
|||+|..++.+++.-+..|+.+.++..+.++-++.|.+.++.. ..|+.+|++.|.+. ..+|||||..+.+++.+.+|
T Consensus 364 SATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkq-EaKiVylLeCLQKT--~PpVLIFaEkK~DVD~IhEY 440 (610)
T KOG0341|consen 364 SATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQ-EAKIVYLLECLQKT--SPPVLIFAEKKADVDDIHEY 440 (610)
T ss_pred eccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHh-hhhhhhHHHHhccC--CCceEEEeccccChHHHHHH
Confidence 9999999999999999999999999999999999999888854 67899999999875 56899999999999999999
Q ss_pred HHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCc
Q 003881 490 LAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDG 569 (789)
Q Consensus 490 L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G 569 (789)
|--+|+.++.|||+.+|.+|..+++.|+.|+.+||||||+++.|||+|++.||||||+|..+++|+|||||+||.| ++|
T Consensus 441 LLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg-~~G 519 (610)
T KOG0341|consen 441 LLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSG-KTG 519 (610)
T ss_pred HHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCC-Ccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 789
Q ss_pred EEEEEEccc-cHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 003881 570 TAYTLVTQK-EARFAGELVNSLIAAGQNVSMELMDLAM 606 (789)
Q Consensus 570 ~~i~lv~~~-d~~~~~~lv~~l~~~~q~vp~~l~~~a~ 606 (789)
.+.+|++++ +...+.+|...|..++|.||+-|..++.
T Consensus 520 iATTfINK~~~esvLlDLK~LL~EakQ~vP~~L~~L~~ 557 (610)
T KOG0341|consen 520 IATTFINKNQEESVLLDLKHLLQEAKQEVPPVLAELAG 557 (610)
T ss_pred eeeeeecccchHHHHHHHHHHHHHhhccCCHHHHHhCC
Confidence 999999986 5667889999999999999999988874
No 8
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=2.4e-69 Score=622.79 Aligned_cols=483 Identities=29% Similarity=0.497 Sum_probs=417.7
Q ss_pred CCCCchhHHHHHhhhh--cCchhhhhhhhcCC----CChHHHHHH-HhhhccCCCCCCCCCChhhhhhhccCCCCCCCCC
Q 003881 106 DDEEDPMESFLMAKKD--VGLTLAADALRAGY----DSDEEVYAA-AKAVDAGMLDYDSDDNPVVVEKKKIEPIPALDHS 178 (789)
Q Consensus 106 ~~eed~~e~~~~~~~~--~~~~~~~~~~~~g~----~~~ee~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (789)
++++++..++.+.++| .+++.|.-|++||. ..|++++.. +++. ..... ...-..+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~-~~~~~~~~~~ 72 (518)
T PLN00206 8 PHEDDVVKERSIEQREALPGEPKCVVCGRYGEYICDETDDDICSLECKQA--------------LLRRV-AKSRVAVGAP 72 (518)
T ss_pred cccchhhhhhhHHhcCCCCCCceEEEecCccceeccCCCCccccHHHHHH--------------HHHHH-hhccCCcCCC
Confidence 3344555666656666 67789999999994 234444322 1111 11111 1223445565
Q ss_pred cccc-CccccccccCChhhcC-CCHHHHHHHHHHcCceeccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHH
Q 003881 179 LIDY-EPFNKDFYQDSASISG-MSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQAL 256 (789)
Q Consensus 179 ~~~~-~~f~k~fy~~~~~i~~-~s~~~~~~~r~~~~i~v~~~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i 256 (789)
..++ .+|+++||..++.... |+..++..+|+.+.|.+.|..+|+|+.+|++++|++.+++.|.+.||..|||+|.++|
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~ai 152 (518)
T PLN00206 73 KPKRLPATDECFYVRDPGSTSGLSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAI 152 (518)
T ss_pred chhhcCCcCCcCCccCcchhccCCHHHHHHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHH
Confidence 5555 7789999998887654 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcc--ccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEEC
Q 003881 257 PIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPE--LQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYG 334 (789)
Q Consensus 257 ~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~--~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~g 334 (789)
|.+++|+|+|++++||||||++|++|++.+++..+. .....++++|||+|||+||.|+.+.++.+....++++.+++|
T Consensus 153 p~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~g 232 (518)
T PLN00206 153 PAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVG 232 (518)
T ss_pred HHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEEC
Confidence 999999999999999999999999999999875432 122367899999999999999999999998888899999999
Q ss_pred CCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEeccCc
Q 003881 335 GMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (789)
Q Consensus 335 g~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~ 414 (789)
|.....+...+..+++|||+||++|.+++.+..+.+.++.+|||||||+|++++|..++..++..++ .+|+++||||++
T Consensus 233 G~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~ 311 (518)
T PLN00206 233 GDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVS 311 (518)
T ss_pred CcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCC
Confidence 9999888888989999999999999999998888999999999999999999999999999998884 689999999999
Q ss_pred HHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHHHHHhcCCCC-CCCCEEEEecccccHHHHHHHHHH-
Q 003881 415 RKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQ- 492 (789)
Q Consensus 415 ~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~- 492 (789)
+.++.++..++.++..+.++........+.+.+..+.. ..|...|.+.|.... ...++||||+++..++.|+..|..
T Consensus 312 ~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~-~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~ 390 (518)
T PLN00206 312 PEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVET-KQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVV 390 (518)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccc-hhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhc
Confidence 99999999999999999888777667777787776643 456667777765432 235899999999999999999975
Q ss_pred cCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEE
Q 003881 493 KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAY 572 (789)
Q Consensus 493 ~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i 572 (789)
.++.+..+||++++.+|..+++.|++|+++|||||++++||||||+|++|||||+|.++.+|+||+||+||.| ..|.++
T Consensus 391 ~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g-~~G~ai 469 (518)
T PLN00206 391 TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMG-EKGTAI 469 (518)
T ss_pred cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCC-CCeEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999 679999
Q ss_pred EEEccccHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 003881 573 TLVTQKEARFAGELVNSLIAAGQNVSMELMDLAM 606 (789)
Q Consensus 573 ~lv~~~d~~~~~~lv~~l~~~~q~vp~~l~~~a~ 606 (789)
+|++..+...+.++++.|..+++.+|++|+++..
T Consensus 470 ~f~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~~~ 503 (518)
T PLN00206 470 VFVNEEDRNLFPELVALLKSSGAAIPRELANSRY 503 (518)
T ss_pred EEEchhHHHHHHHHHHHHHHcCCCCCHHHHhChh
Confidence 9999999999999999999999999999998764
No 9
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.1e-69 Score=556.95 Aligned_cols=366 Identities=39% Similarity=0.642 Sum_probs=346.9
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEE
Q 003881 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (789)
Q Consensus 223 pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vL 302 (789)
...+|.++++.+.++++++..++.+||+||+++||.++.|+|||+.|+||||||.+|+||++++++.++. .+++|
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~-----~~~~l 133 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK-----LFFAL 133 (476)
T ss_pred hhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC-----CceEE
Confidence 3578999999999999999999999999999999999999999999999999999999999999998753 48999
Q ss_pred EEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHh-hcccccCceeEEEEecc
Q 003881 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLK-MKALTMSRVTYLVLDEA 381 (789)
Q Consensus 303 Il~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~-~~~~~l~~i~~lVvDEa 381 (789)
||+||||||.||.+.+..+....+++++++.||.....|...+.+.+|||||||++|++++. .+.+.|..++++|+|||
T Consensus 134 VLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEA 213 (476)
T KOG0330|consen 134 VLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEA 213 (476)
T ss_pred EecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchH
Confidence 99999999999999999999999999999999999999999999999999999999999998 57788999999999999
Q ss_pred chhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHHHH
Q 003881 382 DRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLL 461 (789)
Q Consensus 382 h~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~ 461 (789)
|+++|++|...+..|+..++..+|+++||||+|..+.++.+..+.+|..+.+.........+.|.|.+++. ..|...|+
T Consensus 214 DrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~-k~K~~yLV 292 (476)
T KOG0330|consen 214 DRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPG-KDKDTYLV 292 (476)
T ss_pred HhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccc-cccchhHH
Confidence 99999999999999999999999999999999999999999999999999999988999999999998864 56778888
Q ss_pred HhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccE
Q 003881 462 EKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKS 541 (789)
Q Consensus 462 ~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~ 541 (789)
.+|.+.. .+.+||||++...++.++-.|+..|+.+..|||.|+|..|.-+++.|++|.+.||||||+++||||||.|++
T Consensus 293 ~ll~e~~-g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~ 371 (476)
T KOG0330|consen 293 YLLNELA-GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDV 371 (476)
T ss_pred HHHHhhc-CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceE
Confidence 8887653 479999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHHHHHHcCCC
Q 003881 542 VVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQN 596 (789)
Q Consensus 542 VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~l~~~~q~ 596 (789)
|||||+|.+..+|+||+||++|+| +.|.+|+|++..|...+.+|...+......
T Consensus 372 VVNyDiP~~skDYIHRvGRtaRaG-rsG~~ItlVtqyDve~~qrIE~~~gkkl~~ 425 (476)
T KOG0330|consen 372 VVNYDIPTHSKDYIHRVGRTARAG-RSGKAITLVTQYDVELVQRIEHALGKKLPE 425 (476)
T ss_pred EEecCCCCcHHHHHHHcccccccC-CCcceEEEEehhhhHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999 789999999999999999998877666544
No 10
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-67 Score=568.80 Aligned_cols=393 Identities=44% Similarity=0.716 Sum_probs=368.6
Q ss_pred CceeccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCc
Q 003881 212 AIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQP 291 (789)
Q Consensus 212 ~i~v~~~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~ 291 (789)
.+++.|.++|.++.+|.+..+...+..+++..+|..|||+|+.+||.+..|+++++||+||||||.+|++|++.++++..
T Consensus 61 ~v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~ 140 (482)
T KOG0335|consen 61 PVKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEG 140 (482)
T ss_pred eeeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcC
Confidence 56678999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred cccc-----cCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhc
Q 003881 292 ELQK-----EEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK 366 (789)
Q Consensus 292 ~~~~-----~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~ 366 (789)
.... ...|.+|||+|||+||.|++++++++.....++++.+|||.+...+...+..+|||+||||++|.++++.+
T Consensus 141 ~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g 220 (482)
T KOG0335|consen 141 PEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERG 220 (482)
T ss_pred cccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcc
Confidence 3221 13599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCceeEEEEeccchhcc-CCChHHHHHHHhhcCC----CceEEEEeccCcHHHHHHHHHHhCC-CeEEeeccccCcc
Q 003881 367 ALTMSRVTYLVLDEADRMFD-LGFEPQIRSIVGQIRP----DRQTLLFSATMPRKVEKLAREILSD-PVRVTVGEVGMAN 440 (789)
Q Consensus 367 ~~~l~~i~~lVvDEah~m~~-~~f~~~i~~il~~l~~----~~q~ll~SAT~~~~i~~l~~~~l~~-p~~i~i~~~~~~~ 440 (789)
.+.|..+.||||||||+|+| ++|+++|+.|+..... .+|++|||||+|..++.++..|+.+ .+.+.++..+...
T Consensus 221 ~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~ 300 (482)
T KOG0335|consen 221 KISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTS 300 (482)
T ss_pred eeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeecccc
Confidence 99999999999999999999 9999999999988754 7899999999999999999999987 8999999999999
Q ss_pred cceeEEEEecCCCcccHHHHHHhcCCCC---CCC-----CEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHH
Q 003881 441 EDITQVVHVIPSDAEKLPWLLEKLPGMI---DDG-----DVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEI 512 (789)
Q Consensus 441 ~~i~q~~~~~~~~~~k~~~L~~~L~~~~---~~~-----kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~ 512 (789)
.++.|.+.++. +..|...|+++|.... ..+ ++||||.+++.|+.|+.+|...++++..|||+.+|.+|.++
T Consensus 301 ~ni~q~i~~V~-~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~a 379 (482)
T KOG0335|consen 301 ENITQKILFVN-EMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQA 379 (482)
T ss_pred ccceeEeeeec-chhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHH
Confidence 99999999995 4577788888887544 234 79999999999999999999999999999999999999999
Q ss_pred HHHhhcCCcceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHHHHHH
Q 003881 513 LQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIA 592 (789)
Q Consensus 513 l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~l~~ 592 (789)
++.|+.|.+.|||||++++||||||+|+||||||+|.+..+|+||||||||.| ..|.++.|+...+......|++.|..
T Consensus 380 l~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~G-n~G~atsf~n~~~~~i~~~L~~~l~e 458 (482)
T KOG0335|consen 380 LNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVG-NGGRATSFFNEKNQNIAKALVEILTE 458 (482)
T ss_pred HHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCC-CCceeEEEeccccchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 68999999999999999999999999
Q ss_pred cCCCccHHHHHHHH
Q 003881 593 AGQNVSMELMDLAM 606 (789)
Q Consensus 593 ~~q~vp~~l~~~a~ 606 (789)
++|.||+||.+++.
T Consensus 459 a~q~vP~wl~~~~~ 472 (482)
T KOG0335|consen 459 ANQEVPQWLSELSR 472 (482)
T ss_pred hcccCcHHHHhhhh
Confidence 99999999998554
No 11
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-67 Score=556.11 Aligned_cols=364 Identities=38% Similarity=0.576 Sum_probs=337.2
Q ss_pred CCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEE
Q 003881 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (789)
Q Consensus 224 i~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLI 303 (789)
..+|.+++|+..|++++...||..|||||.++||..+-|+|++.||.||||||.+|+||+|..++-.|.. ....+|||
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~--~~~TRVLV 257 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK--VAATRVLV 257 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc--CcceeEEE
Confidence 3589999999999999999999999999999999999999999999999999999999999999877643 33568999
Q ss_pred EcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhh-cccccCceeEEEEeccc
Q 003881 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM-KALTMSRVTYLVLDEAD 382 (789)
Q Consensus 304 l~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~-~~~~l~~i~~lVvDEah 382 (789)
|||||+||.|++...++++....+.+++++||.+...|-..|+..+||||+|||+|++++.+ ..++|.+|.+||+||||
T Consensus 258 L~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD 337 (691)
T KOG0338|consen 258 LVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD 337 (691)
T ss_pred EeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH
Confidence 99999999999999999999999999999999999999999999999999999999999976 56889999999999999
Q ss_pred hhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCC--CcccHHHH
Q 003881 383 RMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPS--DAEKLPWL 460 (789)
Q Consensus 383 ~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~--~~~k~~~L 460 (789)
+|++.+|..++..|+..++.+||+++|||||...+.+|+.--|..|+.+.+.........+.|.|..+-. +..+-..|
T Consensus 338 RMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l 417 (691)
T KOG0338|consen 338 RMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAML 417 (691)
T ss_pred HHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHH
Confidence 9999999999999999999999999999999999999999999999999999888888888888776642 23344455
Q ss_pred HHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCcc
Q 003881 461 LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIK 540 (789)
Q Consensus 461 ~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~ 540 (789)
..++.+. ...++|||+.++..|.++.-.|--.|+++.-|||.++|.+|.+.++.|++.+++||||||+++|||||++|.
T Consensus 418 ~~l~~rt-f~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~ 496 (691)
T KOG0338|consen 418 ASLITRT-FQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQ 496 (691)
T ss_pred HHHHHHh-cccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCcccee
Confidence 5555544 356999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHHHHH
Q 003881 541 SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLI 591 (789)
Q Consensus 541 ~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~l~ 591 (789)
+||||++|.++..|+||+|||.|+| +.|.+++|+...|.++++.+++.-.
T Consensus 497 tVINy~mP~t~e~Y~HRVGRTARAG-RaGrsVtlvgE~dRkllK~iik~~~ 546 (691)
T KOG0338|consen 497 TVINYAMPKTIEHYLHRVGRTARAG-RAGRSVTLVGESDRKLLKEIIKSST 546 (691)
T ss_pred EEEeccCchhHHHHHHHhhhhhhcc-cCcceEEEeccccHHHHHHHHhhhh
Confidence 9999999999999999999999999 7899999999999999999888743
No 12
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-65 Score=586.40 Aligned_cols=364 Identities=47% Similarity=0.737 Sum_probs=338.0
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEE
Q 003881 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (789)
Q Consensus 225 ~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl 304 (789)
..|++++|++.++++|.+.||..|||||.++||.++.|+|+++.|+||||||++|++|+|.++.... .....+ +||+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~--~~~~~~-aLil 105 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV--ERKYVS-ALIL 105 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccc--ccCCCc-eEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999976431 111112 9999
Q ss_pred cCcHHHHHHHHHHHHHHhhhc-CCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccch
Q 003881 305 APTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (789)
Q Consensus 305 ~PtreLa~Qi~~~~~~~~~~~-~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~ 383 (789)
+||||||.|+++++.+++... ++++++++||.+...+...+..++||||+||+||++++.+..+.+..+.++|+||||+
T Consensus 106 ~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADr 185 (513)
T COG0513 106 APTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADR 185 (513)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhh
Confidence 999999999999999999988 7999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccC--cccceeEEEEecCCCcccHHHHH
Q 003881 384 MFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGM--ANEDITQVVHVIPSDAEKLPWLL 461 (789)
Q Consensus 384 m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~--~~~~i~q~~~~~~~~~~k~~~L~ 461 (789)
|++++|.+.+..|+..++.++|+++||||+|..+..+++.++.+|..+.+..... ....|.|.+..+.....|+..|.
T Consensus 186 mLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~ 265 (513)
T COG0513 186 MLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLL 265 (513)
T ss_pred hhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888875444 78899999999976556888888
Q ss_pred HhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccE
Q 003881 462 EKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKS 541 (789)
Q Consensus 462 ~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~ 541 (789)
.++.... ..++||||+++..++.|+..|...|+++..|||+|+|.+|.++++.|++|+++||||||+++|||||++|++
T Consensus 266 ~ll~~~~-~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~ 344 (513)
T COG0513 266 KLLKDED-EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSH 344 (513)
T ss_pred HHHhcCC-CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccce
Confidence 8887543 347999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccc-cHHHHHHHHHHHHHc
Q 003881 542 VVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK-EARFAGELVNSLIAA 593 (789)
Q Consensus 542 VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~-d~~~~~~lv~~l~~~ 593 (789)
|||||+|.+++.|+||+|||||+| +.|.+++|+++. +...+..+.+.+...
T Consensus 345 VinyD~p~~~e~yvHRiGRTgRaG-~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 345 VINYDLPLDPEDYVHRIGRTGRAG-RKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred eEEccCCCCHHHheeccCccccCC-CCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999 789999999986 888888888887555
No 13
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.8e-62 Score=557.22 Aligned_cols=364 Identities=39% Similarity=0.652 Sum_probs=328.5
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccc-ccCCCeEEEE
Q 003881 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQ-KEEGPIGVIC 304 (789)
Q Consensus 226 sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~-~~~gp~vLIl 304 (789)
+|++++|++.+++.|.+.||..|||+|.++||.+++++|+|+++|||+|||++|++|++..+....... ....+++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 689999999999999999999999999999999999999999999999999999999999986543221 1234589999
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchh
Q 003881 305 APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM 384 (789)
Q Consensus 305 ~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m 384 (789)
+||++||.|+.+.++.+....++++..++||.....+...+..+++|||+||++|++++....+.++++++|||||||+|
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l 161 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH
Confidence 99999999999999999988899999999999988888888889999999999999999888888999999999999999
Q ss_pred ccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHHHHHhc
Q 003881 385 FDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKL 464 (789)
Q Consensus 385 ~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L 464 (789)
++++|...+..++..++..+|+++||||+++.+..++.+++.+|..+.+.........+.+.+..+.. ..+...|..++
T Consensus 162 l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~l~ 240 (456)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDK-KRKRELLSQMI 240 (456)
T ss_pred hccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCH-HHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888876666666677777776643 34444455544
Q ss_pred CCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEE
Q 003881 465 PGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN 544 (789)
Q Consensus 465 ~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~ 544 (789)
.. ....++||||+++..++.|++.|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||||+|++|||
T Consensus 241 ~~-~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~ 319 (456)
T PRK10590 241 GK-GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVN 319 (456)
T ss_pred Hc-CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEE
Confidence 43 23468999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHHHHHH
Q 003881 545 FDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIA 592 (789)
Q Consensus 545 ~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~l~~ 592 (789)
|++|.++.+|+||+||+||.| ..|.+++|++..+..++..+.+.|..
T Consensus 320 ~~~P~~~~~yvqR~GRaGR~g-~~G~ai~l~~~~d~~~~~~ie~~l~~ 366 (456)
T PRK10590 320 YELPNVPEDYVHRIGRTGRAA-ATGEALSLVCVDEHKLLRDIEKLLKK 366 (456)
T ss_pred eCCCCCHHHhhhhccccccCC-CCeeEEEEecHHHHHHHHHHHHHhcC
Confidence 999999999999999999999 67999999999999888888777643
No 14
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.7e-63 Score=490.25 Aligned_cols=376 Identities=33% Similarity=0.559 Sum_probs=352.2
Q ss_pred CCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCe
Q 003881 221 PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPI 300 (789)
Q Consensus 221 P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~ 300 (789)
-+++.+|++++|++.+++.+...||++|..+|+.||+.|+.|+|+|..+..|+|||.+|.+.+|..+--. ....+
T Consensus 23 ~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~-----~r~tQ 97 (400)
T KOG0328|consen 23 VKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS-----VRETQ 97 (400)
T ss_pred cccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc-----cceee
Confidence 3567899999999999999999999999999999999999999999999999999999988887654221 23467
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEec
Q 003881 301 GVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDE 380 (789)
Q Consensus 301 vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDE 380 (789)
+|||.||||||.|+.+.+..+....++.+..+.||.+..+.++.+..|.++|.+||+++++++++..+....+++||+||
T Consensus 98 ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDE 177 (400)
T KOG0328|consen 98 ALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDE 177 (400)
T ss_pred EEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHHH
Q 003881 381 ADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWL 460 (789)
Q Consensus 381 ah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L 460 (789)
||.|++.+|..++..++..+++..|++++|||+|.++.+....|+.+|+.+.+...+...+.|.|.+..+..+.-|+..|
T Consensus 178 aDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtL 257 (400)
T KOG0328|consen 178 ADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTL 257 (400)
T ss_pred HHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987776688888
Q ss_pred HHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCcc
Q 003881 461 LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIK 540 (789)
Q Consensus 461 ~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~ 540 (789)
..+... +.-.+.+||||++..++.|.+.|++..+.+..+||+|++.+|+.++..|++|+.+|||+||+-+||+|+|.|+
T Consensus 258 cdLYd~-LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVs 336 (400)
T KOG0328|consen 258 CDLYDT-LTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVS 336 (400)
T ss_pred HHHhhh-hehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeE
Confidence 776543 3456899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHHHHHHcCCCccHHHHH
Q 003881 541 SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMD 603 (789)
Q Consensus 541 ~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~l~~~~q~vp~~l~~ 603 (789)
+|||||+|.+.+.|+|||||.||.| ++|+++-|+...|.+.+.++.+.+.-...++|..+.+
T Consensus 337 lviNYDLP~nre~YIHRIGRSGRFG-RkGvainFVk~~d~~~lrdieq~yst~i~emp~nvad 398 (400)
T KOG0328|consen 337 LVINYDLPNNRELYIHRIGRSGRFG-RKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNVAD 398 (400)
T ss_pred EEEecCCCccHHHHhhhhccccccC-CcceEEEEecHHHHHHHHHHHHHHhhhcccccchhhh
Confidence 9999999999999999999999999 6899999999999999999999999988888877654
No 15
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.9e-61 Score=556.62 Aligned_cols=366 Identities=37% Similarity=0.603 Sum_probs=328.4
Q ss_pred CCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccc--ccCCCeE
Q 003881 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQ--KEEGPIG 301 (789)
Q Consensus 224 i~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~--~~~gp~v 301 (789)
..+|++++|++.+++.|.+.||..|||+|.++||.++.|+|+|++++||||||++|++|++.+++..+... ....+++
T Consensus 8 ~~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~ra 87 (572)
T PRK04537 8 DLTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRA 87 (572)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 34699999999999999999999999999999999999999999999999999999999999987654322 2235899
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhc-ccccCceeEEEEec
Q 003881 302 VICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK-ALTMSRVTYLVLDE 380 (789)
Q Consensus 302 LIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~-~~~l~~i~~lVvDE 380 (789)
|||+||++||.|+++.+.++....++++..++||.....+...+..+++|||+||++|++++... .+.+..+++|||||
T Consensus 88 LIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDE 167 (572)
T PRK04537 88 LILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDE 167 (572)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecC
Confidence 99999999999999999999998899999999999988888888888999999999999998764 46788999999999
Q ss_pred cchhccCCChHHHHHHHhhcCC--CceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHH
Q 003881 381 ADRMFDLGFEPQIRSIVGQIRP--DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLP 458 (789)
Q Consensus 381 ah~m~~~~f~~~i~~il~~l~~--~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~ 458 (789)
||+|++++|...+..++..++. .+|+++||||++..+..++..++.+|..+.+.........+.+.+... ....|..
T Consensus 168 Ah~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~-~~~~k~~ 246 (572)
T PRK04537 168 ADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFP-ADEEKQT 246 (572)
T ss_pred HHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEec-CHHHHHH
Confidence 9999999999999999999876 789999999999999999999999998777655555556667766654 4456777
Q ss_pred HHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCC
Q 003881 459 WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKS 538 (789)
Q Consensus 459 ~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~ 538 (789)
.|+.++... ...++||||+++..++.|++.|...++.+..+||+|++.+|..+++.|++|+++|||||+++++||||++
T Consensus 247 ~L~~ll~~~-~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~ 325 (572)
T PRK04537 247 LLLGLLSRS-EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDG 325 (572)
T ss_pred HHHHHHhcc-cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccC
Confidence 777777643 4568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHHHHHH
Q 003881 539 IKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIA 592 (789)
Q Consensus 539 v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~l~~ 592 (789)
|++|||||+|.++..|+||+||+||.| +.|.|++|+++.+...+.++.+.+..
T Consensus 326 V~~VInyd~P~s~~~yvqRiGRaGR~G-~~G~ai~~~~~~~~~~l~~i~~~~~~ 378 (572)
T PRK04537 326 VKYVYNYDLPFDAEDYVHRIGRTARLG-EEGDAISFACERYAMSLPDIEAYIEQ 378 (572)
T ss_pred CCEEEEcCCCCCHHHHhhhhcccccCC-CCceEEEEecHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999 68999999999888888887666543
No 16
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=8e-60 Score=533.16 Aligned_cols=367 Identities=37% Similarity=0.579 Sum_probs=330.7
Q ss_pred CCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccc--ccCCCeE
Q 003881 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQ--KEEGPIG 301 (789)
Q Consensus 224 i~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~--~~~gp~v 301 (789)
-.+|++++|++.++++|...||..|||+|.++||.+++|+|++++||||||||++|++|++.+++..+... ...++++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 36899999999999999999999999999999999999999999999999999999999999998654321 2346899
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEecc
Q 003881 302 VICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEA 381 (789)
Q Consensus 302 LIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEa 381 (789)
|||+||++||.|+++.+..++...++++..++||.....+...+..+++|||+||++|.+++....+.+..+.+||||||
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEa 166 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEA 166 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecH
Confidence 99999999999999999999998899999999999888888888888999999999999999888889999999999999
Q ss_pred chhccCCChHHHHHHHhhcCC--CceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHH
Q 003881 382 DRMFDLGFEPQIRSIVGQIRP--DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPW 459 (789)
Q Consensus 382 h~m~~~~f~~~i~~il~~l~~--~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~ 459 (789)
|+|++++|...+..++..++. .+++++||||++..+..++..++.+|..+.+.........+.+.+... ....|...
T Consensus 167 d~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~-~~~~k~~~ 245 (423)
T PRK04837 167 DRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYP-SNEEKMRL 245 (423)
T ss_pred HHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeC-CHHHHHHH
Confidence 999999999999999998874 578899999999999999999999999888766655556666655544 44567777
Q ss_pred HHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCc
Q 003881 460 LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSI 539 (789)
Q Consensus 460 L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v 539 (789)
|..++... ...++||||+++..|+.|+..|...++.+..+||+|++.+|..+++.|++|+++|||||++++||||||+|
T Consensus 246 l~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v 324 (423)
T PRK04837 246 LQTLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAV 324 (423)
T ss_pred HHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCcccc
Confidence 77776543 35689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHHHHHHc
Q 003881 540 KSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAA 593 (789)
Q Consensus 540 ~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~l~~~ 593 (789)
++||+||+|.++..|+||+||+||.| +.|.|++|+++.+...+..+.+.+...
T Consensus 325 ~~VI~~d~P~s~~~yiqR~GR~gR~G-~~G~ai~~~~~~~~~~~~~i~~~~~~~ 377 (423)
T PRK04837 325 THVFNYDLPDDCEDYVHRIGRTGRAG-ASGHSISLACEEYALNLPAIETYIGHS 377 (423)
T ss_pred CEEEEeCCCCchhheEeccccccCCC-CCeeEEEEeCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999 789999999999888888776666443
No 17
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.2e-60 Score=508.04 Aligned_cols=361 Identities=38% Similarity=0.557 Sum_probs=332.0
Q ss_pred CCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEE
Q 003881 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (789)
Q Consensus 224 i~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLI 303 (789)
...|++..|++..+++|+.+||..+|++|...|+.++.|+|+++.|.||+|||++|++|++.++++.+...+ ++-.+||
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r-~~~~vlI 159 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPR-NGTGVLI 159 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCC-CCeeEEE
Confidence 356778899999999999999999999999999999999999999999999999999999999998765443 7788999
Q ss_pred EcCcHHHHHHHHHHHHHHhhhc-CCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcc-cccCceeEEEEecc
Q 003881 304 CAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKA-LTMSRVTYLVLDEA 381 (789)
Q Consensus 304 l~PtreLa~Qi~~~~~~~~~~~-~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~-~~l~~i~~lVvDEa 381 (789)
|||||+||.|++.+++++.... ++.+.++.||.......+.+.++++|+|+|||+|++++++.. +....++++|+|||
T Consensus 160 i~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEA 239 (543)
T KOG0342|consen 160 ICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEA 239 (543)
T ss_pred ecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecc
Confidence 9999999999999999999988 899999999999998888998999999999999999998754 34556689999999
Q ss_pred chhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCC-CeEEeecc--ccCcccceeEEEEecCCCcccHH
Q 003881 382 DRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSD-PVRVTVGE--VGMANEDITQVVHVIPSDAEKLP 458 (789)
Q Consensus 382 h~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~-p~~i~i~~--~~~~~~~i~q~~~~~~~~~~k~~ 458 (789)
|+++++||...+..|+..++..+|+++||||.+..++++++-.+.. |..+.+.. ...+.+.+.|.+.+++.. .++.
T Consensus 240 DrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~-~~f~ 318 (543)
T KOG0342|consen 240 DRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSD-SRFS 318 (543)
T ss_pred hhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEecccc-chHH
Confidence 9999999999999999999999999999999999999999988764 77776544 345677888988888664 4488
Q ss_pred HHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCC
Q 003881 459 WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKS 538 (789)
Q Consensus 459 ~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~ 538 (789)
.|+.+|++.....++||||+|......+++.|+...++|..|||.++|..|..+...|++.+.-|||||||++||+|+|+
T Consensus 319 ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~ 398 (543)
T KOG0342|consen 319 LLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPD 398 (543)
T ss_pred HHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCC
Confidence 88999988877789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHH
Q 003881 539 IKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELV 587 (789)
Q Consensus 539 v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv 587 (789)
|++||+||+|.++.+|+||+|||||.| +.|.+++|+.+.+..++..|.
T Consensus 399 V~~VvQ~~~P~d~~~YIHRvGRTaR~g-k~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 399 VDWVVQYDPPSDPEQYIHRVGRTAREG-KEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred ceEEEEeCCCCCHHHHHHHhccccccC-CCceEEEEeChhHHHHHHHHh
Confidence 999999999999999999999999999 889999999999998887775
No 18
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-60 Score=489.23 Aligned_cols=393 Identities=33% Similarity=0.498 Sum_probs=339.0
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEE
Q 003881 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (789)
Q Consensus 223 pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vL 302 (789)
....|..+||++++.+.|+..++.+|||+|..|||.|+.|+|||.+|.||||||++|.+|+|+.+.+.| .+-.+|
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP-----~giFal 79 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP-----YGIFAL 79 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC-----CcceEE
Confidence 356799999999999999999999999999999999999999999999999999999999999997764 578899
Q ss_pred EEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhc----ccccCceeEEEE
Q 003881 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK----ALTMSRVTYLVL 378 (789)
Q Consensus 303 Il~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~----~~~l~~i~~lVv 378 (789)
|+.|||+||.|+.+.|..+.+..++++.+++||...-.+...|...+||||+||++|.+++..+ ...+.++.++|+
T Consensus 80 vlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVl 159 (442)
T KOG0340|consen 80 VLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVL 159 (442)
T ss_pred EecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999765 345789999999
Q ss_pred eccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCC--eEEeeccccCcccceeEEEEecCCCccc
Q 003881 379 DEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDP--VRVTVGEVGMANEDITQVVHVIPSDAEK 456 (789)
Q Consensus 379 DEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p--~~i~i~~~~~~~~~i~q~~~~~~~~~~k 456 (789)
||||+|++..|...+..++..+|..||+++||||+...+..+...-...+ ..+.........+.+.|.+..++ ...|
T Consensus 160 DEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~-~~vk 238 (442)
T KOG0340|consen 160 DEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVS-IDVK 238 (442)
T ss_pred cchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecc-hhhh
Confidence 99999999999999999999999999999999999988766654433332 22233233344556677777764 4678
Q ss_pred HHHHHHhcCCCCC--CCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccC
Q 003881 457 LPWLLEKLPGMID--DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGL 534 (789)
Q Consensus 457 ~~~L~~~L~~~~~--~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGl 534 (789)
..+|+..|..... .+.++||+++..+|+.|+..|+...+.+..+|+-|+|.+|..++.+|+++..+||||||+++|||
T Consensus 239 daYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGL 318 (442)
T KOG0340|consen 239 DAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGL 318 (442)
T ss_pred HHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCC
Confidence 8888888887655 66899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHHHHHHcCCC----------------cc
Q 003881 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQN----------------VS 598 (789)
Q Consensus 535 DI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~l~~~~q~----------------vp 598 (789)
|||.|.+|||||.|.+|.+|+||+||+.|+| +.|.+++|+++.|...+..|.+.+-..-.+ +.
T Consensus 319 DIP~V~LVvN~diPr~P~~yiHRvGRtARAG-R~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~~~~~~~~~~t~V~~a 397 (442)
T KOG0340|consen 319 DIPTVELVVNHDIPRDPKDYIHRVGRTARAG-RKGMAISIVTQRDVELLQAIEEEIGKKLTEYNKVQRTVELYVTQVTVA 397 (442)
T ss_pred CCCceeEEEecCCCCCHHHHHHhhcchhccc-CCcceEEEechhhHHHHHHHHHHHhcccccccccchhhheehhhHHHH
Confidence 9999999999999999999999999999999 689999999999998888776654332211 11
Q ss_pred HHHHHHHHhcCcccccccccCCCC
Q 003881 599 MELMDLAMKDGRFRSKRDARKGGG 622 (789)
Q Consensus 599 ~~l~~~a~~~~~~~~~~~~r~~g~ 622 (789)
.....+.+.+..|..+...|+...
T Consensus 398 krea~m~m~~~~F~er~q~R~~k~ 421 (442)
T KOG0340|consen 398 KREAEMKMDNNGFGERAQKRRKKR 421 (442)
T ss_pred HHHHHHHhhhcchhHHHHHHHHHH
Confidence 223345666777777665444333
No 19
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=4.9e-58 Score=524.05 Aligned_cols=358 Identities=40% Similarity=0.621 Sum_probs=326.2
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEE
Q 003881 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (789)
Q Consensus 225 ~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl 304 (789)
.+|++++|++.++++|.+.||..|||+|.++||.+++++|+|++||||+|||++|++|++.++... ...+++|||
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~-----~~~~~~lil 78 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK-----RFRVQALVL 78 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc-----cCCceEEEE
Confidence 579999999999999999999999999999999999999999999999999999999999987432 235679999
Q ss_pred cCcHHHHHHHHHHHHHHhhhc-CCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccch
Q 003881 305 APTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (789)
Q Consensus 305 ~PtreLa~Qi~~~~~~~~~~~-~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~ 383 (789)
+||++||.|+.++++.++... ++++..++||.+...+...+..+++|+|+||++|.+++.+..+.+.++++|||||||+
T Consensus 79 ~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~ 158 (460)
T PRK11776 79 CPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADR 158 (460)
T ss_pred eCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHH
Confidence 999999999999999987654 7899999999999999888999999999999999999998888899999999999999
Q ss_pred hccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHHHHHh
Q 003881 384 MFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463 (789)
Q Consensus 384 m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~ 463 (789)
|++++|...+..++..++..+|+++||||+|+.+..++..++.+|..+.+.... ....+.+.+..+.. ..|...|..+
T Consensus 159 ~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~-~~k~~~l~~l 236 (460)
T PRK11776 159 MLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSP-DERLPALQRL 236 (460)
T ss_pred HhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCc-HHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988875543 34457777776654 3477777777
Q ss_pred cCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEE
Q 003881 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVV 543 (789)
Q Consensus 464 L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI 543 (789)
+... ...++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|.++|||||+++++|||||++++||
T Consensus 237 l~~~-~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI 315 (460)
T PRK11776 237 LLHH-QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVI 315 (460)
T ss_pred HHhc-CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEE
Confidence 7543 456899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHHHHH
Q 003881 544 NFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLI 591 (789)
Q Consensus 544 ~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~l~ 591 (789)
+||+|.++..|+||+||+||.| +.|.|++|+++.+...+..+.+.+.
T Consensus 316 ~~d~p~~~~~yiqR~GRtGR~g-~~G~ai~l~~~~e~~~~~~i~~~~~ 362 (460)
T PRK11776 316 NYELARDPEVHVHRIGRTGRAG-SKGLALSLVAPEEMQRANAIEDYLG 362 (460)
T ss_pred EecCCCCHhHhhhhcccccCCC-CcceEEEEEchhHHHHHHHHHHHhC
Confidence 9999999999999999999999 6799999999998877777766553
No 20
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=4.7e-58 Score=535.28 Aligned_cols=358 Identities=41% Similarity=0.656 Sum_probs=326.1
Q ss_pred CCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEE
Q 003881 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (789)
Q Consensus 224 i~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLI 303 (789)
..+|.+++|++.++++|.+.||.+|||+|.++||.++.++|+|++|+||+|||++|++|++..+... ...+++||
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~-----~~~~~~LI 79 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE-----LKAPQILV 79 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc-----cCCCeEEE
Confidence 3469999999999999999999999999999999999999999999999999999999999887432 24678999
Q ss_pred EcCcHHHHHHHHHHHHHHhhhc-CCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccc
Q 003881 304 CAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD 382 (789)
Q Consensus 304 l~PtreLa~Qi~~~~~~~~~~~-~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah 382 (789)
||||++||.|+++++.++.... +++++.++||.....+...+..+++|||+||++|++++.+..+.++.+.+|||||||
T Consensus 80 L~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd 159 (629)
T PRK11634 80 LAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD 159 (629)
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHH
Confidence 9999999999999999998765 799999999999888888888899999999999999999888899999999999999
Q ss_pred hhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHHHHH
Q 003881 383 RMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462 (789)
Q Consensus 383 ~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~ 462 (789)
+|++++|...+..++..++..+|+++||||+|..+..++..|+.+|..+.+.........+.+.+..+. ...|...|..
T Consensus 160 ~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~-~~~k~~~L~~ 238 (629)
T PRK11634 160 EMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVW-GMRKNEALVR 238 (629)
T ss_pred HHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEec-hhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999998888766666677777776664 3467777777
Q ss_pred hcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEE
Q 003881 463 KLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSV 542 (789)
Q Consensus 463 ~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~V 542 (789)
+|... ...++||||+++..++.|+..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||||+|++|
T Consensus 239 ~L~~~-~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~V 317 (629)
T PRK11634 239 FLEAE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLV 317 (629)
T ss_pred HHHhc-CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEE
Confidence 77543 34689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHHH
Q 003881 543 VNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNS 589 (789)
Q Consensus 543 I~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~ 589 (789)
||||+|.++..|+||+|||||+| +.|.+++|+.+.+..++..|.+.
T Consensus 318 I~~d~P~~~e~yvqRiGRtGRaG-r~G~ai~~v~~~e~~~l~~ie~~ 363 (629)
T PRK11634 318 VNYDIPMDSESYVHRIGRTGRAG-RAGRALLFVENRERRLLRNIERT 363 (629)
T ss_pred EEeCCCCCHHHHHHHhccccCCC-CcceEEEEechHHHHHHHHHHHH
Confidence 99999999999999999999999 78999999998877666665443
No 21
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-58 Score=486.66 Aligned_cols=356 Identities=36% Similarity=0.550 Sum_probs=317.1
Q ss_pred CCcccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEE
Q 003881 225 KTFEDCG--FSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (789)
Q Consensus 225 ~sf~~~~--l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vL 302 (789)
..|+++. |++++++++...||.+.||+|..+||.++.++|+++.++||||||+||++|++..++.+........-.+|
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 3566665 55999999999999999999999999999999999999999999999999999999765433322234689
Q ss_pred EEcCcHHHHHHHHHHHHHHhhh-cCCeEEEEECCCChHHHHHHHhc-CCcEEEeChHHHHHHHhhcccc--cCceeEEEE
Q 003881 303 ICAPTRELAHQIYLETKKFAKS-HGIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMKALT--MSRVTYLVL 378 (789)
Q Consensus 303 Il~PtreLa~Qi~~~~~~~~~~-~~i~v~~~~gg~~~~~~~~~l~~-~~dIiV~Tp~~L~~~l~~~~~~--l~~i~~lVv 378 (789)
||+||||||.||.+.+..|... ..+++.+++||.+..+.+..++. ++.|+|+|||+|.+++.+.... +..+++||+
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence 9999999999999999999887 68999999999998888877764 6899999999999999885444 459999999
Q ss_pred eccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccC--cccceeEEEEecCCCccc
Q 003881 379 DEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGM--ANEDITQVVHVIPSDAEK 456 (789)
Q Consensus 379 DEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~--~~~~i~q~~~~~~~~~~k 456 (789)
||||++++++|..++..|+..+|.+|+|=+||||....+.+|++..+.||+.+.+..... ++..+...+..| ....|
T Consensus 164 DEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~-~a~eK 242 (567)
T KOG0345|consen 164 DEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVC-EADEK 242 (567)
T ss_pred cchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEe-cHHHH
Confidence 999999999999999999999999999999999999999999999999999999987765 444455555555 56789
Q ss_pred HHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHc--CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccC
Q 003881 457 LPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGL 534 (789)
Q Consensus 457 ~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~--g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGl 534 (789)
...|+.+|... ...++|||.+|...++.....|... ...+..+||.|.+..|..++..|.+-.-.+|+|||+++|||
T Consensus 243 ~~~lv~~L~~~-~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGl 321 (567)
T KOG0345|consen 243 LSQLVHLLNNN-KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGL 321 (567)
T ss_pred HHHHHHHHhcc-ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccC
Confidence 99999999873 5679999999999999999888765 67899999999999999999999998888999999999999
Q ss_pred CCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHH
Q 003881 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFA 583 (789)
Q Consensus 535 DI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~ 583 (789)
|||+|++||+||+|.++..|+||+|||+|+| +.|.+++|+.+.+..+.
T Consensus 322 Dip~iD~VvQ~DpP~~~~~FvHR~GRTaR~g-r~G~Aivfl~p~E~aYv 369 (567)
T KOG0345|consen 322 DIPGIDLVVQFDPPKDPSSFVHRCGRTARAG-REGNAIVFLNPREEAYV 369 (567)
T ss_pred CCCCceEEEecCCCCChhHHHhhcchhhhcc-CccceEEEecccHHHHH
Confidence 9999999999999999999999999999999 68999999999766543
No 22
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=6e-57 Score=511.77 Aligned_cols=363 Identities=37% Similarity=0.607 Sum_probs=331.1
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEc
Q 003881 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305 (789)
Q Consensus 226 sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~ 305 (789)
+|++++|++.+++.|.+.||.+||++|.++|+.++.++|+|+++|||+|||++|++|++.+++..+.. ....+++|||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~-~~~~~~~lil~ 80 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR-KSGPPRILILT 80 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc-CCCCceEEEEC
Confidence 69999999999999999999999999999999999999999999999999999999999999764321 23357899999
Q ss_pred CcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhc
Q 003881 306 PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (789)
Q Consensus 306 PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~ 385 (789)
||++||.|+++.+..++...++++..++||.....+...+..+++|||+||++|++++....+.+..+.+|||||||+|+
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l 160 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRML 160 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHh
Confidence 99999999999999999989999999999999888877788889999999999999999888889999999999999999
Q ss_pred cCCChHHHHHHHhhcCCCceEEEEeccCcH-HHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHHHHHhc
Q 003881 386 DLGFEPQIRSIVGQIRPDRQTLLFSATMPR-KVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKL 464 (789)
Q Consensus 386 ~~~f~~~i~~il~~l~~~~q~ll~SAT~~~-~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L 464 (789)
+++|...+..+...++..+|+++||||++. .+..++..++.+|..+.+.........+.+.+..+.....|...|..++
T Consensus 161 ~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~ 240 (434)
T PRK11192 161 DMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLL 240 (434)
T ss_pred CCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHH
Confidence 999999999999999989999999999985 5888899999999988877666666778887777766667777777777
Q ss_pred CCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEE
Q 003881 465 PGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN 544 (789)
Q Consensus 465 ~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~ 544 (789)
.. ....++||||+++..++.|+..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||||++++|||
T Consensus 241 ~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~ 319 (434)
T PRK11192 241 KQ-PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVIN 319 (434)
T ss_pred hc-CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEE
Confidence 54 24569999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHHHHH
Q 003881 545 FDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLI 591 (789)
Q Consensus 545 ~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~l~ 591 (789)
||+|.+...|+||+||+||.| +.|.+++|++..|...+..+.+.+.
T Consensus 320 ~d~p~s~~~yiqr~GR~gR~g-~~g~ai~l~~~~d~~~~~~i~~~~~ 365 (434)
T PRK11192 320 FDMPRSADTYLHRIGRTGRAG-RKGTAISLVEAHDHLLLGKIERYIE 365 (434)
T ss_pred ECCCCCHHHHhhcccccccCC-CCceEEEEecHHHHHHHHHHHHHHh
Confidence 999999999999999999999 6799999999999888888776654
No 23
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-59 Score=472.17 Aligned_cols=366 Identities=30% Similarity=0.528 Sum_probs=339.4
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEE
Q 003881 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (789)
Q Consensus 225 ~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl 304 (789)
..|+++.|...|+-.+...||.+|.|+|.++||.++.|+|+|..|..|+|||.+|++|+|..+--. .+.-.++|+
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~-----~~~IQ~~il 159 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK-----KNVIQAIIL 159 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc-----ccceeEEEE
Confidence 469999999999999999999999999999999999999999999999999999999999987332 345679999
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchh
Q 003881 305 APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM 384 (789)
Q Consensus 305 ~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m 384 (789)
+|||+||.|+...++++.+..++++.+.+||.+..+.+-.+....+++|+||+++++++++....++.+.++|+||||.|
T Consensus 160 VPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKl 239 (459)
T KOG0326|consen 160 VPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKL 239 (459)
T ss_pred eecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhh
Confidence 99999999999999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHHHHHhc
Q 003881 385 FDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKL 464 (789)
Q Consensus 385 ~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L 464 (789)
++..|...+..++..+|+.+|++++|||+|-.+..+...++.+|..|..-. ..+...+.|.+.++. +..|...|-.++
T Consensus 240 Ls~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~-eLtl~GvtQyYafV~-e~qKvhCLntLf 317 (459)
T KOG0326|consen 240 LSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLME-ELTLKGVTQYYAFVE-ERQKVHCLNTLF 317 (459)
T ss_pred hchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhh-hhhhcchhhheeeec-hhhhhhhHHHHH
Confidence 999999999999999999999999999999999999999999999887643 456678899888884 456776665555
Q ss_pred CCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEE
Q 003881 465 PGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN 544 (789)
Q Consensus 465 ~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~ 544 (789)
.+ +.-.+.|||||+...++.|+..+.+.|+.|..+|..|-|..|.+++..|++|.++.|||||.+.||+||+.+++|||
T Consensus 318 sk-LqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVIN 396 (459)
T KOG0326|consen 318 SK-LQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVIN 396 (459)
T ss_pred HH-hcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEe
Confidence 44 35678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHHHHHHcCCCccH
Q 003881 545 FDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSM 599 (789)
Q Consensus 545 ~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~l~~~~q~vp~ 599 (789)
||+|.+.+.|+|||||.||.| +.|.|+.|++-+|...+.+|.+.|-....++|.
T Consensus 397 FDfpk~aEtYLHRIGRsGRFG-hlGlAInLityedrf~L~~IE~eLGtEI~pip~ 450 (459)
T KOG0326|consen 397 FDFPKNAETYLHRIGRSGRFG-HLGLAINLITYEDRFNLYRIEQELGTEIKPIPS 450 (459)
T ss_pred cCCCCCHHHHHHHccCCccCC-CcceEEEEEehhhhhhHHHHHHHhccccccCCC
Confidence 999999999999999999999 689999999999999999998888777777774
No 24
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-57 Score=487.59 Aligned_cols=375 Identities=33% Similarity=0.534 Sum_probs=331.6
Q ss_pred HHHHHHHHHHc-CceeccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHH
Q 003881 201 EQDVMEYKKSL-AIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAF 279 (789)
Q Consensus 201 ~~~~~~~r~~~-~i~v~~~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~ 279 (789)
++++..+...+ .+. -..+..|+++.|+...++.|+..+|..||.+|+++||..++|+|+|..|.||||||++|
T Consensus 50 ee~i~~l~~ky~ei~------~~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAF 123 (758)
T KOG0343|consen 50 EEEIEELKQKYAEID------STTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAF 123 (758)
T ss_pred HHHHHHHHHHHHHhh------hhhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeee
Confidence 44555555554 222 23456799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHH
Q 003881 280 VLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL 359 (789)
Q Consensus 280 llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L 359 (789)
++|+|.+++.. ......|--+|||.|||+||.|+++.+.+..+.+++.+.+++||.........+ ..++|+|||||||
T Consensus 124 lvPvlE~L~r~-kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRL 201 (758)
T KOG0343|consen 124 LVPVLEALYRL-KWSPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGRL 201 (758)
T ss_pred hHHHHHHHHHc-CCCCCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechHHH
Confidence 99999998764 234467888999999999999999999999999999999999998865544443 4599999999999
Q ss_pred HHHHhh-cccccCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccc--
Q 003881 360 IDMLKM-KALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEV-- 436 (789)
Q Consensus 360 ~~~l~~-~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~-- 436 (789)
+.++.. -.+....+.+|||||||+|++|||..++..|+..+++.+|+++||||....+.+|++..+.+|..|.+...
T Consensus 202 LQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~ 281 (758)
T KOG0343|consen 202 LQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAV 281 (758)
T ss_pred HHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEecccc
Confidence 998865 45678899999999999999999999999999999999999999999999999999999999999888633
Q ss_pred cCcccceeEEEEecCCCcccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHc--CCceeeccCCCCHHHHHHHHH
Q 003881 437 GMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK--GFKAAALHGDKDQASRMEILQ 514 (789)
Q Consensus 437 ~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~--g~~v~~lhg~~~~~eR~~~l~ 514 (789)
...+..+.|.+.+++ ...|+..|...|...+ ..++|||+.+..++..++..+.+. |+++..|||.|+|..|..+..
T Consensus 282 ~atP~~L~Q~y~~v~-l~~Ki~~L~sFI~shl-k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~ 359 (758)
T KOG0343|consen 282 AATPSNLQQSYVIVP-LEDKIDMLWSFIKSHL-KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYK 359 (758)
T ss_pred ccChhhhhheEEEEe-hhhHHHHHHHHHHhcc-ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHH
Confidence 456677888888875 4689999999988654 458999999999999999999875 899999999999999999999
Q ss_pred HhhcCCcceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEcccc-HHHHHHH
Q 003881 515 KFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE-ARFAGEL 586 (789)
Q Consensus 515 ~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d-~~~~~~l 586 (789)
.|...+..||+|||+++||||+|.|++||.||+|.++++|+||+||+.|.. ..|.+++++++.+ ..++..|
T Consensus 360 ~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~-~~G~sll~L~psEeE~~l~~L 431 (758)
T KOG0343|consen 360 KFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYK-ERGESLLMLTPSEEEAMLKKL 431 (758)
T ss_pred HHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhccc-CCCceEEEEcchhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998 6799999999988 4444333
No 25
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.5e-57 Score=482.33 Aligned_cols=364 Identities=36% Similarity=0.556 Sum_probs=312.4
Q ss_pred CCCcccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCc-cccccCCCeE
Q 003881 224 VKTFEDCGFSTQLMHAISK-QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQP-ELQKEEGPIG 301 (789)
Q Consensus 224 i~sf~~~~l~~~l~~~l~~-~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~-~~~~~~gp~v 301 (789)
-..|..+||++.+...|.. +++..||.+|+++||.+++|+|+++.++||||||++|++|++.++.... .+.+.+|+.+
T Consensus 135 s~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~A 214 (708)
T KOG0348|consen 135 SAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYA 214 (708)
T ss_pred cccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceE
Confidence 4579999999999999975 6999999999999999999999999999999999999999999998764 4556789999
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhhcC-CeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhh-cccccCceeEEEEe
Q 003881 302 VICAPTRELAHQIYLETKKFAKSHG-IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM-KALTMSRVTYLVLD 379 (789)
Q Consensus 302 LIl~PtreLa~Qi~~~~~~~~~~~~-i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~-~~~~l~~i~~lVvD 379 (789)
|||+||||||.|+++.+.++.+.+. |-.+++.||..+......|++|++|+|+|||||+++|++ ..+.++++.+||||
T Consensus 215 LVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlD 294 (708)
T KOG0348|consen 215 LVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLD 294 (708)
T ss_pred EEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEec
Confidence 9999999999999999999988653 455778899988888889999999999999999999976 56788999999999
Q ss_pred ccchhccCCChHHHHHHHhhcC-------------CCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccc----------
Q 003881 380 EADRMFDLGFEPQIRSIVGQIR-------------PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEV---------- 436 (789)
Q Consensus 380 Eah~m~~~~f~~~i~~il~~l~-------------~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~---------- 436 (789)
|||+|+++||+..|..|++.+. +.+|.+++|||+...+..|+..-+.||+.|.....
T Consensus 295 EaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a 374 (708)
T KOG0348|consen 295 EADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKA 374 (708)
T ss_pred chhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhh
Confidence 9999999999999999988762 24789999999999999999999999998872111
Q ss_pred ---------------cCcccceeEEEEecCCCcccHHHHHHhcCC---CCCCCCEEEEecccccHHHHHHHHHHc-----
Q 003881 437 ---------------GMANEDITQVVHVIPSDAEKLPWLLEKLPG---MIDDGDVLVFASKKTTVDEIESQLAQK----- 493 (789)
Q Consensus 437 ---------------~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~---~~~~~kvLVF~~s~~~a~~l~~~L~~~----- 493 (789)
...++.+.|.+.+++.. -++..|..+|.. .....++|||+.+.+.++.=+..|...
T Consensus 375 ~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpK-LRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~ 453 (708)
T KOG0348|consen 375 VQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPK-LRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHL 453 (708)
T ss_pred hhhcCCcccccccccccCcHHhhhceEecCCc-hhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhccc
Confidence 12234456677777543 344455554433 223458999999999998877777542
Q ss_pred -----------------CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHH
Q 003881 494 -----------------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVH 556 (789)
Q Consensus 494 -----------------g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQ 556 (789)
+.++..|||+|+|.+|..++..|...+..||+||||++||||+|.|.+||.||+|.++.+|+|
T Consensus 454 e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylH 533 (708)
T KOG0348|consen 454 EGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLH 533 (708)
T ss_pred ccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHH
Confidence 456899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCCcEEEEEEccccHHHHHHHHHH
Q 003881 557 RIGRTGRAGDKDGTAYTLVTQKEARFAGELVNS 589 (789)
Q Consensus 557 riGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~ 589 (789)
|+|||.|+| ..|.+++|+.+.+..++..|...
T Consensus 534 RvGRTARaG-~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 534 RVGRTARAG-EKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred Hhhhhhhcc-CCCceEEEecccHHHHHHHHHhh
Confidence 999999999 67999999999998866555433
No 26
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-56 Score=469.80 Aligned_cols=366 Identities=33% Similarity=0.540 Sum_probs=328.8
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccc-cccCCCeEEE
Q 003881 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPEL-QKEEGPIGVI 303 (789)
Q Consensus 225 ~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~-~~~~gp~vLI 303 (789)
.+|++++|+++|++++.+.||.+||-+|..+||.++.|+|++..|.||||||++|++|+++.++..... ....+|.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 689999999999999999999999999999999999999999999999999999999999999986554 4567899999
Q ss_pred EcCcHHHHHHHHHHHHHHhhhc--CCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcc-cccCceeEEEEec
Q 003881 304 CAPTRELAHQIYLETKKFAKSH--GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKA-LTMSRVTYLVLDE 380 (789)
Q Consensus 304 l~PtreLa~Qi~~~~~~~~~~~--~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~-~~l~~i~~lVvDE 380 (789)
|+||+|||+|++..+.++.... .++++-+....+.......|...++|||+||++|+.++.... ..+..+++||+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 9999999999999999986643 477777777777766667788889999999999999998876 6788999999999
Q ss_pred cchhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccc-eeEEEEecCCCcccHHH
Q 003881 381 ADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANED-ITQVVHVIPSDAEKLPW 459 (789)
Q Consensus 381 ah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~-i~q~~~~~~~~~~k~~~ 459 (789)
||.|+..||+..+..+.+++|+..|.++||||+..+++.+-..+|.+|+.+...+....+.+ +.|....| ++.+|+..
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~c-se~DKfll 257 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKC-SEEDKFLL 257 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEe-ccchhHHH
Confidence 99999999999999999999999999999999999999999999999999888776665544 44554445 58899999
Q ss_pred HHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeeh-----------
Q 003881 460 LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD----------- 528 (789)
Q Consensus 460 L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~----------- 528 (789)
++.+|+-.+-.|++|||+|+...|.+|.-+|.+.|++.++|+|.|+..-|..++++|+.|-++||||||
T Consensus 258 lyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee 337 (569)
T KOG0346|consen 258 LYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEE 337 (569)
T ss_pred HHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhcc
Confidence 988888766789999999999999999999999999999999999999999999999999999999999
Q ss_pred ------------------------hhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHH
Q 003881 529 ------------------------VAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAG 584 (789)
Q Consensus 529 ------------------------v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~ 584 (789)
-++||||+..|.+|||||+|.++..|+||+|||+|++ ++|++++|+.+.+..-..
T Consensus 338 ~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~-n~GtalSfv~P~e~~g~~ 416 (569)
T KOG0346|consen 338 VKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGN-NKGTALSFVSPKEEFGKE 416 (569)
T ss_pred ccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCC-CCCceEEEecchHHhhhh
Confidence 1359999999999999999999999999999999999 689999999998776555
Q ss_pred HHHHHHHH
Q 003881 585 ELVNSLIA 592 (789)
Q Consensus 585 ~lv~~l~~ 592 (789)
.|...+..
T Consensus 417 ~le~~~~d 424 (569)
T KOG0346|consen 417 SLESILKD 424 (569)
T ss_pred HHHHHHhh
Confidence 55444443
No 27
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7e-55 Score=499.58 Aligned_cols=379 Identities=39% Similarity=0.586 Sum_probs=332.5
Q ss_pred CCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccc--ccCCC
Q 003881 222 RPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQ--KEEGP 299 (789)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~--~~~gp 299 (789)
.....|.+++|++.+++.|.+.||..|+++|.++|+.+++|+|+|++++||||||++|++|++..++..+... ....+
T Consensus 84 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~ 163 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEP 163 (475)
T ss_pred cCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 3456799999999999999999999999999999999999999999999999999999999999987654221 12257
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHh-cCCcEEEeChHHHHHHHhhcccccCceeEEEE
Q 003881 300 IGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK-AGCEIVIATPGRLIDMLKMKALTMSRVTYLVL 378 (789)
Q Consensus 300 ~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~-~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVv 378 (789)
++|||+||++||.|+++.++.+.+..++++..++||.....+...+. ..++|||+||++|++++......+.++++|||
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lVi 243 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVL 243 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEe
Confidence 89999999999999999999999888999999999988877777765 45899999999999999888888999999999
Q ss_pred eccchhccCCChHHHHHHHhhcCC--CceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCccc
Q 003881 379 DEADRMFDLGFEPQIRSIVGQIRP--DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEK 456 (789)
Q Consensus 379 DEah~m~~~~f~~~i~~il~~l~~--~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k 456 (789)
||||++++++|...+..++..++. .+|++++|||++..+..++..++.+|..+.+.........+.+.+..+. ...+
T Consensus 244 DEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~k 322 (475)
T PRK01297 244 DEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVA-GSDK 322 (475)
T ss_pred chHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEec-chhH
Confidence 999999999999999999998864 6799999999999999999999999988877666555566667666554 3456
Q ss_pred HHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCC
Q 003881 457 LPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDI 536 (789)
Q Consensus 457 ~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI 536 (789)
...|..++... ...++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++||||
T Consensus 323 ~~~l~~ll~~~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi 401 (475)
T PRK01297 323 YKLLYNLVTQN-PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHI 401 (475)
T ss_pred HHHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcc
Confidence 66666666542 34589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHHHHHHcC-CCcc-HHHHH
Q 003881 537 KSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAG-QNVS-MELMD 603 (789)
Q Consensus 537 ~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~l~~~~-q~vp-~~l~~ 603 (789)
+++++||+|++|.++..|+||+||+||.| +.|.+++|++..|..++..+.+.+.... ..+| .+|+.
T Consensus 402 ~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g-~~g~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T PRK01297 402 DGISHVINFTLPEDPDDYVHRIGRTGRAG-ASGVSISFAGEDDAFQLPEIEELLGRKISCEMPPAELLK 469 (475)
T ss_pred cCCCEEEEeCCCCCHHHHHHhhCccCCCC-CCceEEEEecHHHHHHHHHHHHHhCCCCcccCCcHHHhh
Confidence 99999999999999999999999999999 6799999999998888888877775553 3433 34443
No 28
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-56 Score=479.53 Aligned_cols=372 Identities=33% Similarity=0.509 Sum_probs=315.0
Q ss_pred CCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC-CCEEEEccCCChhhHHHHHHHHHHHhcCcccc----
Q 003881 220 VPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQ---- 294 (789)
Q Consensus 220 ~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~g-rdvll~a~TGsGKTla~llpil~~l~~~~~~~---- 294 (789)
.+..+..|.+++||..++.+|...||..||+||...||.++.| .|+|..|+||||||+||-+||+..+.......
T Consensus 176 ~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~ 255 (731)
T KOG0347|consen 176 SKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELS 255 (731)
T ss_pred cccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhh
Confidence 3556788999999999999999999999999999999999999 79999999999999999999999555432211
Q ss_pred ----ccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhccc--
Q 003881 295 ----KEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL-- 368 (789)
Q Consensus 295 ----~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~-- 368 (789)
+...|.+||++||||||.|+...+...+...++++..++||.....|-+-|...++|||+|||||+.++.....
T Consensus 256 ~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l 335 (731)
T KOG0347|consen 256 NTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHL 335 (731)
T ss_pred hHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhh
Confidence 12234699999999999999999999999999999999999999999888988999999999999999987654
Q ss_pred -ccCceeEEEEeccchhccCCChHHHHHHHhhcC-----CCceEEEEeccCcH---------------------HHHHHH
Q 003881 369 -TMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR-----PDRQTLLFSATMPR---------------------KVEKLA 421 (789)
Q Consensus 369 -~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~-----~~~q~ll~SAT~~~---------------------~i~~l~ 421 (789)
++..+.+|||||||||+..|+...+..+|..+. ..+|+++||||+.- .++.|+
T Consensus 336 ~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lm 415 (731)
T KOG0347|consen 336 GNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLM 415 (731)
T ss_pred hhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHH
Confidence 567889999999999999999999999988775 56899999999842 233333
Q ss_pred HH--HhCCCeEEeeccccCcccceeEEEEecCCCcccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceee
Q 003881 422 RE--ILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAA 499 (789)
Q Consensus 422 ~~--~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~ 499 (789)
.. |...|..|.......+...+......| ....|-..|+-+|.. ..|++|||||+...+.+|.-+|...++....
T Consensus 416 k~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C-~~~eKD~ylyYfl~r--yPGrTlVF~NsId~vKRLt~~L~~L~i~p~~ 492 (731)
T KOG0347|consen 416 KKIGFRGKPKIIDLTPQSATASTLTESLIEC-PPLEKDLYLYYFLTR--YPGRTLVFCNSIDCVKRLTVLLNNLDIPPLP 492 (731)
T ss_pred HHhCccCCCeeEecCcchhHHHHHHHHhhcC-CccccceeEEEEEee--cCCceEEEechHHHHHHHHHHHhhcCCCCch
Confidence 33 234566665544444433343333333 223343334334433 5789999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEcccc
Q 003881 500 LHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE 579 (789)
Q Consensus 500 lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d 579 (789)
||..|.|.+|...+++|++....|||||||++||||||+|.|||+|..|.+.+.|+||.|||.|++ ..|+.++|+.+.+
T Consensus 493 LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~-~~Gvsvml~~P~e 571 (731)
T KOG0347|consen 493 LHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARAN-SEGVSVMLCGPQE 571 (731)
T ss_pred hhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEeccccccccc-CCCeEEEEeChHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 6899999999999
Q ss_pred HHHHHHHHHHHHHcCC
Q 003881 580 ARFAGELVNSLIAAGQ 595 (789)
Q Consensus 580 ~~~~~~lv~~l~~~~q 595 (789)
...+..|++-|.....
T Consensus 572 ~~~~~KL~ktL~k~~d 587 (731)
T KOG0347|consen 572 VGPLKKLCKTLKKKED 587 (731)
T ss_pred hHHHHHHHHHHhhccC
Confidence 9999999999976553
No 29
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=7.7e-54 Score=481.84 Aligned_cols=369 Identities=33% Similarity=0.547 Sum_probs=328.0
Q ss_pred CCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEE
Q 003881 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (789)
Q Consensus 224 i~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLI 303 (789)
+.+|.++++++.+.++|.+.||..|+|+|.++|+.+++++|+++++|||+|||++|++|++.++... ..++++||
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~-----~~~~~~li 101 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD-----LNACQALI 101 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC-----CCCceEEE
Confidence 5789999999999999999999999999999999999999999999999999999999999887422 24678999
Q ss_pred EcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccch
Q 003881 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (789)
Q Consensus 304 l~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~ 383 (789)
|+||++||.|+.+.+..+.....+.+..++|+.....++..+..+++|+|+||++|.+++......+.++++|||||||+
T Consensus 102 l~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~ 181 (401)
T PTZ00424 102 LAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADE 181 (401)
T ss_pred ECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHH
Confidence 99999999999999999988788888889999888888888888899999999999999988888899999999999999
Q ss_pred hccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHHHHHh
Q 003881 384 MFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463 (789)
Q Consensus 384 m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~ 463 (789)
+.+++|...+..++..+++..|++++|||+|+.+..+...++.+|..+.+.........+.+.+..+.....+...+..+
T Consensus 182 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (401)
T PTZ00424 182 MLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDL 261 (401)
T ss_pred HHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988776555555566667666665444455555555
Q ss_pred cCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEE
Q 003881 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVV 543 (789)
Q Consensus 464 L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI 543 (789)
+.. ....++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||
T Consensus 262 ~~~-~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI 340 (401)
T PTZ00424 262 YET-LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVI 340 (401)
T ss_pred HHh-cCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEE
Confidence 543 2456899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHHHHHHcCCCccH
Q 003881 544 NFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSM 599 (789)
Q Consensus 544 ~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~l~~~~q~vp~ 599 (789)
+||+|.+...|+||+||+||.| +.|.|++|+++.+...+..+.+.+....+..+.
T Consensus 341 ~~~~p~s~~~y~qr~GRagR~g-~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~ 395 (401)
T PTZ00424 341 NYDLPASPENYIHRIGRSGRFG-RKGVAINFVTPDDIEQLKEIERHYNTQIEEMPM 395 (401)
T ss_pred EECCCCCHHHEeecccccccCC-CCceEEEEEcHHHHHHHHHHHHHHCCcccccCc
Confidence 9999999999999999999999 689999999999988888887766544444443
No 30
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.8e-55 Score=474.09 Aligned_cols=402 Identities=33% Similarity=0.524 Sum_probs=360.4
Q ss_pred HHHHHHHcCceeccCCCCCCCCCccc----CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHH
Q 003881 204 VMEYKKSLAIRVSGFDVPRPVKTFED----CGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAF 279 (789)
Q Consensus 204 ~~~~r~~~~i~v~~~~~P~pi~sf~~----~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~ 279 (789)
....|+.+.+.+.|..+|+|+.+|.+ +...+.+++++...+|..|+|+|++|+|.++.+++++.|+|||+|||++|
T Consensus 111 ~~~~Rk~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf 190 (593)
T KOG0344|consen 111 LLGIRKSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAF 190 (593)
T ss_pred cccchhcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhh
Confidence 45678888999999999999999997 57899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHh--hhcCCeEEEEECCCChHH-HHHHHhcCCcEEEeCh
Q 003881 280 VLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA--KSHGIRVSAVYGGMSKLD-QFKELKAGCEIVIATP 356 (789)
Q Consensus 280 llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~--~~~~i~v~~~~gg~~~~~-~~~~l~~~~dIiV~Tp 356 (789)
++|++.++..........|-+++|+.|||+||.|++.++.++. ...++++..+.......+ ........++|+|.||
T Consensus 191 ~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP 270 (593)
T KOG0344|consen 191 NLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTP 270 (593)
T ss_pred hhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCH
Confidence 9999999976543233457889999999999999999999998 555555554444322221 1112233489999999
Q ss_pred HHHHHHHhhcc--cccCceeEEEEeccchhccC-CChHHHHHHHhhcC-CCceEEEEeccCcHHHHHHHHHHhCCCeEEe
Q 003881 357 GRLIDMLKMKA--LTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIR-PDRQTLLFSATMPRKVEKLAREILSDPVRVT 432 (789)
Q Consensus 357 ~~L~~~l~~~~--~~l~~i~~lVvDEah~m~~~-~f~~~i~~il~~l~-~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~ 432 (789)
.+|..++.... +.+..+.++|+||||++++. .|..|+..|+..+. ++..+-+||||++-.+++++...+.++..+.
T Consensus 271 ~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vi 350 (593)
T KOG0344|consen 271 MRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVI 350 (593)
T ss_pred HHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEE
Confidence 99999998765 67899999999999999998 89999999988775 5667779999999999999999999999999
Q ss_pred eccccCcccceeEEEEecCCCcccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHH-HHcCCceeeccCCCCHHHHHH
Q 003881 433 VGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQL-AQKGFKAAALHGDKDQASRME 511 (789)
Q Consensus 433 i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L-~~~g~~v~~lhg~~~~~eR~~ 511 (789)
++........|.|....+.+...|+..+.+++.... ..++|||+++++.|..|...| .-.++.+.+|||..++.+|.+
T Consensus 351 vg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~-~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde 429 (593)
T KOG0344|consen 351 VGLRNSANETVDQELVFCGSEKGKLLALRQLVASGF-KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDE 429 (593)
T ss_pred EecchhHhhhhhhhheeeecchhHHHHHHHHHhccC-CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHH
Confidence 999999999999999999999999999999988763 459999999999999999999 677899999999999999999
Q ss_pred HHHHhhcCCcceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHHHHH
Q 003881 512 ILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLI 591 (789)
Q Consensus 512 ~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~l~ 591 (789)
++++|+.|++.|||||++++||+|+.++++|||||+|.+...|+|||||+||+| +.|.||+|++..|...+.-+.+.++
T Consensus 430 ~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag-~~g~Aitfytd~d~~~ir~iae~~~ 508 (593)
T KOG0344|consen 430 TMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAG-RSGKAITFYTDQDMPRIRSIAEVME 508 (593)
T ss_pred HHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCC-CCcceEEEeccccchhhhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 7899999999999999999999999
Q ss_pred HcCCCccHHHHHHHHh
Q 003881 592 AAGQNVSMELMDLAMK 607 (789)
Q Consensus 592 ~~~q~vp~~l~~~a~~ 607 (789)
.+|..||.+++.+.+.
T Consensus 509 ~sG~evpe~~m~~~k~ 524 (593)
T KOG0344|consen 509 QSGCEVPEKIMGIKKL 524 (593)
T ss_pred HcCCcchHHHHhhhhh
Confidence 9999999999988763
No 31
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-52 Score=428.41 Aligned_cols=370 Identities=32% Similarity=0.494 Sum_probs=327.2
Q ss_pred CCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC--CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCC
Q 003881 222 RPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGP 299 (789)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~g--rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp 299 (789)
..+.+|+++.|+++|++.|..++|.+|+.||..++|.++.. +|+|..+..|+|||.+|+|.||..+--. -.-|
T Consensus 87 yS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~-----~~~P 161 (477)
T KOG0332|consen 87 YSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD-----VVVP 161 (477)
T ss_pred cccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc-----ccCC
Confidence 35788999999999999999999999999999999999976 7999999999999999999999987321 2357
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhh-cccccCceeEEEE
Q 003881 300 IGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM-KALTMSRVTYLVL 378 (789)
Q Consensus 300 ~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~-~~~~l~~i~~lVv 378 (789)
.++.|+|||+||.|+.+.+.+..+..++++.+.+-+.....- . +-..+|+|+||+.+.+++.+ +.+.+..+.++|+
T Consensus 162 Q~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG-~--~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVl 238 (477)
T KOG0332|consen 162 QCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRG-N--KLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVL 238 (477)
T ss_pred CceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccC-C--cchhheeeCCCccHHHHHHHHHhhChhhceEEEe
Confidence 899999999999999999999988888888887776521110 0 11267999999999999987 7888999999999
Q ss_pred eccchhcc-CCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccH
Q 003881 379 DEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKL 457 (789)
Q Consensus 379 DEah~m~~-~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~ 457 (789)
||||.|++ .||.++-..|...++++.|+|+||||+...+..++..+..++..+.+.........|.|.+..|.....|+
T Consensus 239 DEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~ 318 (477)
T KOG0332|consen 239 DEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKY 318 (477)
T ss_pred cchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHH
Confidence 99999887 57999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCC
Q 003881 458 PWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIK 537 (789)
Q Consensus 458 ~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~ 537 (789)
..|.+ |...+.-++.||||.++..+..|+..|...|+.|.++||+|...+|..++.+|+.|..+|||+|++++||+|++
T Consensus 319 ~~l~~-lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~ 397 (477)
T KOG0332|consen 319 QALVN-LYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVA 397 (477)
T ss_pred HHHHH-HHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccc
Confidence 99998 55556778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEcCCC------CHHHHHHHHhhcCCCCCCCcEEEEEEccc-cHHHHHHHHHHHHHcC-CCccHHH
Q 003881 538 SIKSVVNFDIAR------DMDMHVHRIGRTGRAGDKDGTAYTLVTQK-EARFAGELVNSLIAAG-QNVSMEL 601 (789)
Q Consensus 538 ~v~~VI~~d~p~------s~~~yiQriGR~gR~G~k~G~~i~lv~~~-d~~~~~~lv~~l~~~~-q~vp~~l 601 (789)
.|++|||||+|. +++.|+|||||+||.| +.|.++.|+... ....+..|-+.+.... +.+|..+
T Consensus 398 qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFG-kkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~d~ 468 (477)
T KOG0332|consen 398 QVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFG-KKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPDDL 468 (477)
T ss_pred eEEEEEecCCccccCCCCCHHHHHHHhccccccc-ccceEEEeecccCcHHHHHHHHHHHhhcceecCCccH
Confidence 999999999997 6899999999999999 789999999765 4566667766664333 3344333
No 32
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.6e-53 Score=441.12 Aligned_cols=361 Identities=38% Similarity=0.599 Sum_probs=336.0
Q ss_pred CCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEE
Q 003881 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (789)
Q Consensus 224 i~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLI 303 (789)
-..|..+||+..++++|.+.||..|||||+..+|.+|.++|++..+.||||||.+|++||+.++.... ..|-++||
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s----~~g~Rali 95 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS----QTGLRALI 95 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc----ccccceee
Confidence 46899999999999999999999999999999999999999999999999999999999999986542 45678999
Q ss_pred EcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccch
Q 003881 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (789)
Q Consensus 304 l~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~ 383 (789)
+.|||+||.|....++.+....++++++++||....+++..+..++|||++||+++..+.-.-.+.|+.+.|||+||||+
T Consensus 96 lsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadr 175 (529)
T KOG0337|consen 96 LSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADR 175 (529)
T ss_pred ccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhH
Confidence 99999999999999999999999999999999999999999999999999999999998877778899999999999999
Q ss_pred hccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHHHHHh
Q 003881 384 MFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463 (789)
Q Consensus 384 m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~ 463 (789)
|+.+||.+++..++.+++..+|+++||||+|+.+..+++.-+.+|..+.+.......+.+...+..+ ....|...|+.+
T Consensus 176 lfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~-~~a~K~aaLl~i 254 (529)
T KOG0337|consen 176 LFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRV-RKAEKEAALLSI 254 (529)
T ss_pred HHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeee-ccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988665555566666666665 456899999999
Q ss_pred cCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEE
Q 003881 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVV 543 (789)
Q Consensus 464 L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI 543 (789)
+.....+.+++|||.++.+++.+...|...++.+..++|.|++.-|...+..|..++..+||.|++++||+|||..+.||
T Consensus 255 l~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvi 334 (529)
T KOG0337|consen 255 LGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVI 334 (529)
T ss_pred HhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccc
Confidence 98887778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHHHH
Q 003881 544 NFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSL 590 (789)
Q Consensus 544 ~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~l 590 (789)
|||+|....-|+||+||+.|+| ..|++|.||.+++..++-+|-..|
T Consensus 335 nyd~p~~~klFvhRVgr~arag-rtg~aYs~V~~~~~~yl~DL~lfl 380 (529)
T KOG0337|consen 335 NYDFPPDDKLFVHRVGRVARAG-RTGRAYSLVASTDDPYLLDLQLFL 380 (529)
T ss_pred cccCCCCCceEEEEecchhhcc-ccceEEEEEecccchhhhhhhhhc
Confidence 9999999999999999999999 689999999999988877775544
No 33
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.7e-52 Score=433.21 Aligned_cols=367 Identities=33% Similarity=0.547 Sum_probs=336.8
Q ss_pred CCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEE
Q 003881 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (789)
Q Consensus 224 i~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLI 303 (789)
+.+|++++|++.|++.+...||.+|+.||+.||..+..|+|+++.+++|+|||.+|+++++.++-- ...-..+|+
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~-----~~ke~qali 99 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM-----SVKETQALI 99 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc-----chHHHHHHH
Confidence 458999999999999999999999999999999999999999999999999999999999998721 122356899
Q ss_pred EcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhc-CCcEEEeChHHHHHHHhhcccccCceeEEEEeccc
Q 003881 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD 382 (789)
Q Consensus 304 l~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah 382 (789)
++|||+||.|+......+....+.++..+.||.....+...+.. .++|+|+||+++.+++....+....++++|+||||
T Consensus 100 laPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaD 179 (397)
T KOG0327|consen 100 LAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEAD 179 (397)
T ss_pred hcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchH
Confidence 99999999999999999988889999999999988866555554 58999999999999999988888899999999999
Q ss_pred hhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHHHHH
Q 003881 383 RMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462 (789)
Q Consensus 383 ~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~ 462 (789)
.|+..+|..++..++.+++++.|++++|||+|..+..+.+.|+.+|+.+.+.....+.+.+.|.+..+..+. |+..|..
T Consensus 180 EmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~-k~~~l~d 258 (397)
T KOG0327|consen 180 EMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE-KLDTLCD 258 (397)
T ss_pred hhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc-cccHHHH
Confidence 999999999999999999999999999999999999999999999999999988888999999998886654 8888888
Q ss_pred hcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEE
Q 003881 463 KLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSV 542 (789)
Q Consensus 463 ~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~V 542 (789)
+.. .-.+.+||||+++.++.|...|...++.+..+||+|.+.+|..++..|+.|..+|||.|+.++||+||..+..|
T Consensus 259 l~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slv 335 (397)
T KOG0327|consen 259 LYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLV 335 (397)
T ss_pred HHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhccee
Confidence 777 45689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHHHHHHcCCCccHH
Q 003881 543 VNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSME 600 (789)
Q Consensus 543 I~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~l~~~~q~vp~~ 600 (789)
|||++|.+.+.|+||+||+||.| ++|+++.|++..+...++++.+.+.-.-..+|..
T Consensus 336 inydlP~~~~~yihR~gr~gr~g-rkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~ 392 (397)
T KOG0327|consen 336 VNYDLPARKENYIHRIGRAGRFG-RKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSN 392 (397)
T ss_pred eeeccccchhhhhhhcccccccC-CCceeeeeehHhhHHHHHhHHHhcCCcceecccc
Confidence 99999999999999999999999 7899999999999999998887765544444443
No 34
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.5e-50 Score=439.04 Aligned_cols=356 Identities=31% Similarity=0.457 Sum_probs=322.5
Q ss_pred cCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccc
Q 003881 217 GFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKE 296 (789)
Q Consensus 217 ~~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~ 296 (789)
+.-.|.....|+++-|...++..|++.+|..||++|..|||+++.+.|+|+.+..|+|||++|.+.++..+-- ..
T Consensus 17 ~DV~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~-----~~ 91 (980)
T KOG4284|consen 17 IDVQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS-----RS 91 (980)
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc-----cc
Confidence 3345667788999999999999999999999999999999999999999999999999999999988877633 24
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHHhhh-cCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeE
Q 003881 297 EGPIGVICAPTRELAHQIYLETKKFAKS-HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTY 375 (789)
Q Consensus 297 ~gp~vLIl~PtreLa~Qi~~~~~~~~~~-~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~ 375 (789)
..+.+|||+|||+||.||.+.+.+++.. .|++|.+++||.........++. ++|+|+|||||..+++...++.+.+.+
T Consensus 92 ~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~s~vrl 170 (980)
T KOG4284|consen 92 SHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNMSHVRL 170 (980)
T ss_pred CcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCCccceeE
Confidence 5688999999999999999999999874 48999999999988777666655 889999999999999999999999999
Q ss_pred EEEeccchhcc-CCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCc
Q 003881 376 LVLDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDA 454 (789)
Q Consensus 376 lVvDEah~m~~-~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~ 454 (789)
+||||||.|++ ..|..+|..|++.+|..+|++.||||.|..+..++.+||.+|..+.........-.|.|.+..+++..
T Consensus 171 fVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~n 250 (980)
T KOG4284|consen 171 FVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPN 250 (980)
T ss_pred EEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCc
Confidence 99999999998 56999999999999999999999999999999999999999999998888888888999988877642
Q ss_pred -------ccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEee
Q 003881 455 -------EKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT 527 (789)
Q Consensus 455 -------~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT 527 (789)
.|+..|-.++..+ +-.+.||||+....|+-++.+|...|+.|.+|.|.|+|.+|..+++.++.-.++|||+|
T Consensus 251 nsveemrlklq~L~~vf~~i-py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsT 329 (980)
T KOG4284|consen 251 NSVEEMRLKLQKLTHVFKSI-PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVST 329 (980)
T ss_pred chHHHHHHHHHHHHHHHhhC-chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEec
Confidence 2555555555543 44589999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccH
Q 003881 528 DVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (789)
Q Consensus 528 ~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~ 580 (789)
|..+||||-+.|++|||.|+|.+.++|.|||||+||.| ..|.+++|++....
T Consensus 330 DLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG-~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 330 DLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFG-AHGAAVTLLEDERE 381 (980)
T ss_pred chhhccCCccccceEEecCCCcchHHHHHHhhhccccc-ccceeEEEeccchh
Confidence 99999999999999999999999999999999999999 56999999987644
No 35
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=9.2e-48 Score=457.09 Aligned_cols=344 Identities=19% Similarity=0.277 Sum_probs=273.8
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHH
Q 003881 231 GFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTREL 310 (789)
Q Consensus 231 ~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreL 310 (789)
.|++.+.+.|.+.||.+|+++|.++|+.+++|+|+|+++|||||||++|++|+|..+... .++++|||+|||+|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~------~~~~aL~l~PtraL 93 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD------PRATALYLAPTKAL 93 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC------CCcEEEEEcChHHH
Confidence 488999999999999999999999999999999999999999999999999999998653 35789999999999
Q ss_pred HHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhc----ccccCceeEEEEeccchhcc
Q 003881 311 AHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK----ALTMSRVTYLVLDEADRMFD 386 (789)
Q Consensus 311 a~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~----~~~l~~i~~lVvDEah~m~~ 386 (789)
|.|+...++++. ..++++..+.|+.+. .+...+..+++|||+||++|...+... ...++++++|||||||+|.+
T Consensus 94 a~q~~~~l~~l~-~~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g 171 (742)
T TIGR03817 94 AADQLRAVRELT-LRGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG 171 (742)
T ss_pred HHHHHHHHHHhc-cCCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC
Confidence 999999999987 447888777776654 455667778999999999987533211 12378899999999999976
Q ss_pred CCChHHHHHHHhhc-------CCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCC-------
Q 003881 387 LGFEPQIRSIVGQI-------RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPS------- 452 (789)
Q Consensus 387 ~~f~~~i~~il~~l-------~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~------- 452 (789)
. |...+..++..+ +.++|++++|||+++..+ ++..++..|..+.. ....... ..+...+.+.
T Consensus 172 ~-fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i~-~~~~~~~-~~~~~~~~p~~~~~~~~ 247 (742)
T TIGR03817 172 V-FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVAVT-EDGSPRG-ARTVALWEPPLTELTGE 247 (742)
T ss_pred c-cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEEEC-CCCCCcC-ceEEEEecCCccccccc
Confidence 4 777766555443 467899999999998754 67788888765432 2111111 1222221111
Q ss_pred ---------CcccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHc--------CCceeeccCCCCHHHHHHHHHH
Q 003881 453 ---------DAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK--------GFKAAALHGDKDQASRMEILQK 515 (789)
Q Consensus 453 ---------~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~--------g~~v~~lhg~~~~~eR~~~l~~ 515 (789)
...+...|..++. ...++||||+++..++.|+..|+.. +..+..+||++++.+|..+++.
T Consensus 248 ~~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~ 324 (742)
T TIGR03817 248 NGAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERA 324 (742)
T ss_pred cccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHH
Confidence 0123334444443 2569999999999999999998764 5688999999999999999999
Q ss_pred hhcCCcceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEcc--ccHHHHHHHHHHH
Q 003881 516 FKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ--KEARFAGELVNSL 590 (789)
Q Consensus 516 F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~--~d~~~~~~lv~~l 590 (789)
|++|++++||||+++++||||+++++||+|++|.++..|+||+||+||.| +.|.+++++.. .|..++..+.+.+
T Consensus 325 f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G-~~g~ai~v~~~~~~d~~~~~~~~~~~ 400 (742)
T TIGR03817 325 LRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRG-QGALVVLVARDDPLDTYLVHHPEALF 400 (742)
T ss_pred HHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCC-CCcEEEEEeCCChHHHHHHhCHHHHh
Confidence 99999999999999999999999999999999999999999999999999 67999998863 3444455444444
No 36
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-48 Score=411.67 Aligned_cols=352 Identities=30% Similarity=0.471 Sum_probs=286.2
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHH---------cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEE
Q 003881 234 TQLMHAISKQGYEKPTSIQCQALPIIL---------SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (789)
Q Consensus 234 ~~l~~~l~~~g~~~ptpiQ~~~i~~il---------~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl 304 (789)
..+.+.+.++++....|+|.+.+|+++ ..+|+++.||||||||++|.+|+++.+...+ -+.-++|||
T Consensus 146 a~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~----v~~LRavVi 221 (620)
T KOG0350|consen 146 ATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP----VKRLRAVVI 221 (620)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCC----ccceEEEEE
Confidence 345567899999999999999999996 2589999999999999999999999886653 234679999
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcC-----CcEEEeChHHHHHHHh-hcccccCceeEEEE
Q 003881 305 APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAG-----CEIVIATPGRLIDMLK-MKALTMSRVTYLVL 378 (789)
Q Consensus 305 ~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~-----~dIiV~Tp~~L~~~l~-~~~~~l~~i~~lVv 378 (789)
+||++|+.|++..+.+++...++.|+.+.|..+.......|... .||+|+||+||++++. .+.+.|..+.|+||
T Consensus 222 vPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVI 301 (620)
T KOG0350|consen 222 VPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVI 301 (620)
T ss_pred eeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEe
Confidence 99999999999999999999999998888888877776766543 4999999999999998 47788999999999
Q ss_pred eccchhccCCChHHHHHHHhhcC----------------------------------CCceEEEEeccCcHHHHHHHHHH
Q 003881 379 DEADRMFDLGFEPQIRSIVGQIR----------------------------------PDRQTLLFSATMPRKVEKLAREI 424 (789)
Q Consensus 379 DEah~m~~~~f~~~i~~il~~l~----------------------------------~~~q~ll~SAT~~~~i~~l~~~~ 424 (789)
||||||++..|...+-.++..+. +..+.+++|||+...-..+...-
T Consensus 302 DEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~ 381 (620)
T KOG0350|consen 302 DEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLT 381 (620)
T ss_pred chHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhh
Confidence 99999998665554443333221 12357888999877777777777
Q ss_pred hCCCeEEeecc----ccCcccceeEEEEecCCCcccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHH----HcCCc
Q 003881 425 LSDPVRVTVGE----VGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLA----QKGFK 496 (789)
Q Consensus 425 l~~p~~i~i~~----~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~----~~g~~ 496 (789)
++.|....+.. ....+..+.+....+ ....|...+..++... .-.++|+|+++...+.+++..|+ ...++
T Consensus 382 l~~Prl~~v~~~~~~ryslp~~l~~~~vv~-~~~~kpl~~~~lI~~~-k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~ 459 (620)
T KOG0350|consen 382 LHIPRLFHVSKPLIGRYSLPSSLSHRLVVT-EPKFKPLAVYALITSN-KLNRTLCFVNSVSSANRLAHVLKVEFCSDNFK 459 (620)
T ss_pred cCCCceEEeecccceeeecChhhhhceeec-ccccchHhHHHHHHHh-hcceEEEEecchHHHHHHHHHHHHHhccccch
Confidence 77785444431 222333333333333 3334555566666543 34589999999999999999987 23677
Q ss_pred eeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEc
Q 003881 497 AAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVT 576 (789)
Q Consensus 497 v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~ 576 (789)
+..+.|.++...|...+++|+.|.++||||+|+++||+|+.+++.|||||+|.+...|+||+|||+|+| +.|.||+++.
T Consensus 460 ~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAg-q~G~a~tll~ 538 (620)
T KOG0350|consen 460 VSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAG-QDGYAITLLD 538 (620)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhccccccc-CCceEEEeec
Confidence 888999999999999999999999999999999999999999999999999999999999999999999 6799999999
Q ss_pred cccHHHHHHHHHHHHH
Q 003881 577 QKEARFAGELVNSLIA 592 (789)
Q Consensus 577 ~~d~~~~~~lv~~l~~ 592 (789)
..+.+.+.++++....
T Consensus 539 ~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 539 KHEKRLFSKLLKKTNL 554 (620)
T ss_pred cccchHHHHHHHHhcc
Confidence 9998888777766544
No 37
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=6.5e-46 Score=437.74 Aligned_cols=344 Identities=18% Similarity=0.279 Sum_probs=267.8
Q ss_pred Cccc--CCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEE
Q 003881 226 TFED--CGFSTQLMHAISK-QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (789)
Q Consensus 226 sf~~--~~l~~~l~~~l~~-~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vL 302 (789)
.|.. +.....+...+++ .||..++|+|.++|+.++.|+|+|+++|||+|||++|++|+|.. ++.+|
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-----------~GiTL 504 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-----------PGITL 504 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-----------CCcEE
Confidence 4554 4445556666654 58999999999999999999999999999999999999999853 35699
Q ss_pred EEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHh------cCCcEEEeChHHHHH--HHhhc---ccccC
Q 003881 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK------AGCEIVIATPGRLID--MLKMK---ALTMS 371 (789)
Q Consensus 303 Il~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~------~~~dIiV~Tp~~L~~--~l~~~---~~~l~ 371 (789)
||+|+++|+.++...+.. .++.+..+.++....++...+. ..++|||+||++|.. .+... .....
T Consensus 505 VISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~ 580 (1195)
T PLN03137 505 VISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRG 580 (1195)
T ss_pred EEeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcc
Confidence 999999999865555544 3899999999988766654433 358999999999862 22211 11234
Q ss_pred ceeEEEEeccchhccCC--ChHHHHHH--HhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEE
Q 003881 372 RVTYLVLDEADRMFDLG--FEPQIRSI--VGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVV 447 (789)
Q Consensus 372 ~i~~lVvDEah~m~~~~--f~~~i~~i--l~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~ 447 (789)
.+.+|||||||+|.+|| |.+.+..+ +...-+..++++||||+++.+...+...+.....+.. .......++. +
T Consensus 581 ~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vf-r~Sf~RpNL~--y 657 (1195)
T PLN03137 581 LLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVF-RQSFNRPNLW--Y 657 (1195)
T ss_pred ccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEe-ecccCccceE--E
Confidence 58899999999999998 66766643 4444567899999999999888766665543222111 1112223332 2
Q ss_pred EecCCCcccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEee
Q 003881 448 HVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT 527 (789)
Q Consensus 448 ~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT 527 (789)
.++.........+..++.........||||.++..|+.|+..|...++.+..+||+|++.+|..+++.|..|+++|||||
T Consensus 658 ~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVAT 737 (1195)
T PLN03137 658 SVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICAT 737 (1195)
T ss_pred EEeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEe
Confidence 33332222234556665544345689999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHH
Q 003881 528 DVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVN 588 (789)
Q Consensus 528 ~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~ 588 (789)
+++++|||+|+|++||||++|.+++.|+||+||+||.| +.+.|++|++..|...+..++.
T Consensus 738 dAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG-~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 738 VAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDG-QRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred chhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCC-CCceEEEEecHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999 6899999999888766655553
No 38
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.4e-45 Score=418.23 Aligned_cols=327 Identities=20% Similarity=0.317 Sum_probs=259.2
Q ss_pred HcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHH
Q 003881 242 KQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 242 ~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~ 321 (789)
..||..|+|+|.++|+.+++++|+++++|||+|||++|++|++.. ++.+|||+||++|+.|++..+..+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~-----------~~~~lVi~P~~~L~~dq~~~l~~~ 74 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS-----------DGITLVISPLISLMEDQVLQLKAS 74 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc-----------CCcEEEEecHHHHHHHHHHHHHHc
Confidence 358999999999999999999999999999999999999998752 346899999999999998887754
Q ss_pred hhhcCCeEEEEECCCChHHHH---HHHhc-CCcEEEeChHHHHHHH-hhccc-ccCceeEEEEeccchhccCC--ChHHH
Q 003881 322 AKSHGIRVSAVYGGMSKLDQF---KELKA-GCEIVIATPGRLIDML-KMKAL-TMSRVTYLVLDEADRMFDLG--FEPQI 393 (789)
Q Consensus 322 ~~~~~i~v~~~~gg~~~~~~~---~~l~~-~~dIiV~Tp~~L~~~l-~~~~~-~l~~i~~lVvDEah~m~~~~--f~~~i 393 (789)
++.+..+.++....++. ..+.. .++|+++||++|.... ....+ .+..+.+|||||||++.+|+ |.+.+
T Consensus 75 ----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~ 150 (470)
T TIGR00614 75 ----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDY 150 (470)
T ss_pred ----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHH
Confidence 78888888776655332 22333 4899999999975422 11112 56789999999999999987 55655
Q ss_pred HHH--HhhcCCCceEEEEeccCcHHHHHHHHHHhC--CCeEEeeccccCcccceeEEEEecCCCcccHHHHHHhcCCCCC
Q 003881 394 RSI--VGQIRPDRQTLLFSATMPRKVEKLAREILS--DPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMID 469 (789)
Q Consensus 394 ~~i--l~~l~~~~q~ll~SAT~~~~i~~l~~~~l~--~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~ 469 (789)
..+ +....++.++++||||+++.+...+...+. +|..+.. . ....++... ...........+...+.....
T Consensus 151 ~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~-s--~~r~nl~~~--v~~~~~~~~~~l~~~l~~~~~ 225 (470)
T TIGR00614 151 KALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCT-S--FDRPNLYYE--VRRKTPKILEDLLRFIRKEFK 225 (470)
T ss_pred HHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC-C--CCCCCcEEE--EEeCCccHHHHHHHHHHHhcC
Confidence 543 333346789999999999987766555543 4443322 1 122233222 222222345556666654334
Q ss_pred CCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEcCCC
Q 003881 470 DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIAR 549 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~ 549 (789)
...+||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++||+|++|.
T Consensus 226 ~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~ 305 (470)
T TIGR00614 226 GKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPK 305 (470)
T ss_pred CCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHHH
Q 003881 550 DMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNS 589 (789)
Q Consensus 550 s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~ 589 (789)
++..|+||+||+||.| ..|.|++|+++.|...+..++..
T Consensus 306 s~~~y~Qr~GRaGR~G-~~~~~~~~~~~~d~~~~~~~~~~ 344 (470)
T TIGR00614 306 SMESYYQESGRAGRDG-LPSECHLFYAPADINRLRRLLME 344 (470)
T ss_pred CHHHHHhhhcCcCCCC-CCceEEEEechhHHHHHHHHHhc
Confidence 9999999999999999 78999999999998877776654
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=4.9e-43 Score=410.83 Aligned_cols=332 Identities=19% Similarity=0.342 Sum_probs=259.5
Q ss_pred CHHHHHHHHH-cCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHH
Q 003881 233 STQLMHAISK-QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (789)
Q Consensus 233 ~~~l~~~l~~-~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa 311 (789)
+....+.|++ .||..|+|+|.++|+.+++++|+++++|||+|||++|++|++.. ...+|||+|+++|+
T Consensus 10 ~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-----------~g~tlVisPl~sL~ 78 (607)
T PRK11057 10 ESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-----------DGLTLVVSPLISLM 78 (607)
T ss_pred hhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-----------CCCEEEEecHHHHH
Confidence 3344444544 59999999999999999999999999999999999999999853 24589999999999
Q ss_pred HHHHHHHHHHhhhcCCeEEEEECCCChHHHHHH---Hh-cCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccC
Q 003881 312 HQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LK-AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL 387 (789)
Q Consensus 312 ~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~---l~-~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~ 387 (789)
.|+...++.+ ++.+.++.++......... +. ...+|+++||++|........+...++.+|||||||++.+|
T Consensus 79 ~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~ 154 (607)
T PRK11057 79 KDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQW 154 (607)
T ss_pred HHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccc
Confidence 9998888765 7888888877766544322 22 24789999999987422222334557899999999999998
Q ss_pred C--ChHHHHHH--HhhcCCCceEEEEeccCcHHHHHHHHHHh--CCCeEEeeccccCcccceeEEEEecCCCcccHHHHH
Q 003881 388 G--FEPQIRSI--VGQIRPDRQTLLFSATMPRKVEKLAREIL--SDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLL 461 (789)
Q Consensus 388 ~--f~~~i~~i--l~~l~~~~q~ll~SAT~~~~i~~l~~~~l--~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~ 461 (789)
+ |.+.+..+ +....+..+++++|||+++.+...+...+ .+|... +... ...++.. ..+ ....+...++
T Consensus 155 G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~-~~~~--~r~nl~~--~v~-~~~~~~~~l~ 228 (607)
T PRK11057 155 GHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSF--DRPNIRY--TLV-EKFKPLDQLM 228 (607)
T ss_pred cCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEE-ECCC--CCCccee--eee-eccchHHHHH
Confidence 7 55555433 22233678999999999988765444443 344322 2211 1222221 122 2233445566
Q ss_pred HhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccE
Q 003881 462 EKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKS 541 (789)
Q Consensus 462 ~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~ 541 (789)
..+... ...++||||+++..|+.++..|...++.+..+|++|++.+|..+++.|+.|+++|||||+++++|||+|+|++
T Consensus 229 ~~l~~~-~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~ 307 (607)
T PRK11057 229 RYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRF 307 (607)
T ss_pred HHHHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCE
Confidence 555432 4568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHH
Q 003881 542 VVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELV 587 (789)
Q Consensus 542 VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv 587 (789)
||+||+|.++..|+||+||+||.| ..|.|++|+++.|...+..++
T Consensus 308 VI~~d~P~s~~~y~Qr~GRaGR~G-~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 308 VVHFDIPRNIESYYQETGRAGRDG-LPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred EEEeCCCCCHHHHHHHhhhccCCC-CCceEEEEeCHHHHHHHHHHH
Confidence 999999999999999999999999 689999999999877666554
No 40
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=8.6e-43 Score=418.16 Aligned_cols=395 Identities=19% Similarity=0.261 Sum_probs=298.8
Q ss_pred ChhhcCCCHHHHHHHHHHcCceec------------cCCCCCCCCCcccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHH
Q 003881 193 SASISGMSEQDVMEYKKSLAIRVS------------GFDVPRPVKTFEDCGFSTQLMHAISK-QGYEKPTSIQCQALPII 259 (789)
Q Consensus 193 ~~~i~~~s~~~~~~~r~~~~i~v~------------~~~~P~pi~sf~~~~l~~~l~~~l~~-~g~~~ptpiQ~~~i~~i 259 (789)
.+.+.+|....|...|.+..-.+. ....+. ..+..+..+.+.+.+ .+| +|||+|.++|+.+
T Consensus 390 ~~~l~~lg~~~w~~~k~~~~~~~~~~a~~l~~l~a~r~~~~~-----~~~~~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I 463 (926)
T TIGR00580 390 NPALDKLGGKSWEKTKAKVKKSVREIAAKLIELYAKRKAIKG-----HAFPPDLEWQQEFEDSFPF-EETPDQLKAIEEI 463 (926)
T ss_pred CCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCCCCCHHHHHHHHHhCCC-CCCHHHHHHHHHH
Confidence 455778888889888765522111 000000 012344566666655 477 5999999999999
Q ss_pred HcC------CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEE
Q 003881 260 LSG------RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVY 333 (789)
Q Consensus 260 l~g------rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~ 333 (789)
+++ +|+|++++||+|||.+|++|++..+. ++++++||+||++||.|+++.+++++..+++++..++
T Consensus 464 ~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~--------~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Ls 535 (926)
T TIGR00580 464 KADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL--------DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLS 535 (926)
T ss_pred HhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH--------hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEe
Confidence 975 79999999999999999999998873 3578999999999999999999999888889999998
Q ss_pred CCCChHHH---HHHHhc-CCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEE
Q 003881 334 GGMSKLDQ---FKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLF 409 (789)
Q Consensus 334 gg~~~~~~---~~~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~ 409 (789)
|+.+..++ ...+.. .++|||+||..| ...+.+.++.+|||||+|+ |.......+..++..+|+|+|
T Consensus 536 g~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahr-----fgv~~~~~L~~~~~~~~vL~~ 605 (926)
T TIGR00580 536 RFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQR-----FGVKQKEKLKELRTSVDVLTL 605 (926)
T ss_pred ccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeecccc-----cchhHHHHHHhcCCCCCEEEE
Confidence 88765433 344554 489999999432 3455788999999999999 445566777778888999999
Q ss_pred eccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCccc-HHHHHHhcCCCCCCCCEEEEecccccHHHHHH
Q 003881 410 SATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEK-LPWLLEKLPGMIDDGDVLVFASKKTTVDEIES 488 (789)
Q Consensus 410 SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k-~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~ 488 (789)
|||+.+....++...+.++..+..... ....+.+.+... .... ...+...+ ...++++|||+++..++.+++
T Consensus 606 SATpiprtl~~~l~g~~d~s~I~~~p~--~R~~V~t~v~~~--~~~~i~~~i~~el---~~g~qv~if~n~i~~~e~l~~ 678 (926)
T TIGR00580 606 SATPIPRTLHMSMSGIRDLSIIATPPE--DRLPVRTFVMEY--DPELVREAIRREL---LRGGQVFYVHNRIESIEKLAT 678 (926)
T ss_pred ecCCCHHHHHHHHhcCCCcEEEecCCC--CccceEEEEEec--CHHHHHHHHHHHH---HcCCeEEEEECCcHHHHHHHH
Confidence 999877665555555566665554322 222344433322 1111 12222322 346799999999999999999
Q ss_pred HHHHc--CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEcCCC-CHHHHHHHHhhcCCCC
Q 003881 489 QLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIAR-DMDMHVHRIGRTGRAG 565 (789)
Q Consensus 489 ~L~~~--g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~-s~~~yiQriGR~gR~G 565 (789)
.|++. ++++..+||.|++.+|..++..|++|+++|||||+++++|||||++++||++++|. ....|.||+||+||.|
T Consensus 679 ~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g 758 (926)
T TIGR00580 679 QLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSK 758 (926)
T ss_pred HHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCC
Confidence 99985 78999999999999999999999999999999999999999999999999999976 5779999999999999
Q ss_pred CCCcEEEEEEcccc--HHHHHHHHHHHHHcC---CCccHHHHHHHHhcCcccccccccCCCCCCCCCCCC
Q 003881 566 DKDGTAYTLVTQKE--ARFAGELVNSLIAAG---QNVSMELMDLAMKDGRFRSKRDARKGGGKKGKGRGG 630 (789)
Q Consensus 566 ~k~G~~i~lv~~~d--~~~~~~lv~~l~~~~---q~vp~~l~~~a~~~~~~~~~~~~r~~g~~~g~g~gg 630 (789)
+.|.||+|+...+ .....+.++.|++.. ..+.....|+.+ |+.|...|..+.|
T Consensus 759 -~~g~aill~~~~~~l~~~~~~RL~~~~~~~~~g~gf~ia~~Dl~~-----------Rg~G~~lG~~QsG 816 (926)
T TIGR00580 759 -KKAYAYLLYPHQKALTEDAQKRLEAIQEFSELGAGFKIALHDLEI-----------RGAGNLLGEEQSG 816 (926)
T ss_pred -CCeEEEEEECCcccCCHHHHHHHHHHHHhhcchhhHHHHHHHHHh-----------cCCcCCCCCcccC
Confidence 7899999997653 244555666666654 478777788777 6677777665554
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=7.9e-43 Score=422.72 Aligned_cols=343 Identities=22% Similarity=0.306 Sum_probs=254.2
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccc-ccCCCeEEEEcCcHHH
Q 003881 232 FSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQ-KEEGPIGVICAPTREL 310 (789)
Q Consensus 232 l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~-~~~gp~vLIl~PtreL 310 (789)
|++.+.+.+.+ +|..|||+|.++|+.+++|+|+|++||||||||++|++|++.+++...... ...++++|||+||++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 56666666655 799999999999999999999999999999999999999999987543211 1346789999999999
Q ss_pred HHHHHHHHHH-------Hhh----hc-CCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhccc--ccCceeEE
Q 003881 311 AHQIYLETKK-------FAK----SH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL--TMSRVTYL 376 (789)
Q Consensus 311 a~Qi~~~~~~-------~~~----~~-~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~--~l~~i~~l 376 (789)
+.|+++.+.. ++. .. ++++.+.+|+.+..+....+...++|+||||++|..++....+ .+.++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999876653 221 12 6788899999888777777777899999999999888765432 47899999
Q ss_pred EEeccchhccCCChHHHHHHHhhc----CCCceEEEEeccCcHHHHHHHHHHhCC-----CeEEeeccccC-cccceeEE
Q 003881 377 VLDEADRMFDLGFEPQIRSIVGQI----RPDRQTLLFSATMPRKVEKLAREILSD-----PVRVTVGEVGM-ANEDITQV 446 (789)
Q Consensus 377 VvDEah~m~~~~f~~~i~~il~~l----~~~~q~ll~SAT~~~~i~~l~~~~l~~-----p~~i~i~~~~~-~~~~i~q~ 446 (789)
||||+|.|.+..+...+...+.++ .+..|+|++|||+++ ...++.++... +..+.+..... ....+...
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~-~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~ 255 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEP-LEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVI 255 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCC-HHHHHHHhcCccccCCCCceEEEccCCCccceEEEe
Confidence 999999999877666655444333 367899999999975 34455544321 11111111110 11111100
Q ss_pred EE---ec-CCCcccHHHHHHhcCCCC-CCCCEEEEecccccHHHHHHHHHHc------CCceeeccCCCCHHHHHHHHHH
Q 003881 447 VH---VI-PSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQK------GFKAAALHGDKDQASRMEILQK 515 (789)
Q Consensus 447 ~~---~~-~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~------g~~v~~lhg~~~~~eR~~~l~~ 515 (789)
.. .. .........+...|.... ...++||||+++..|+.++..|... +..+..+||++++.+|..+++.
T Consensus 256 ~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~ 335 (876)
T PRK13767 256 SPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEK 335 (876)
T ss_pred ccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHH
Confidence 00 00 011111222233332221 2468999999999999999999873 4679999999999999999999
Q ss_pred hhcCCcceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEc
Q 003881 516 FKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVT 576 (789)
Q Consensus 516 F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~ 576 (789)
|++|.++|||||+++++|||||++++||+|+.|.++..|+||+||+||.+...+..+++..
T Consensus 336 fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 336 LKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred HHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 9999999999999999999999999999999999999999999999997533334444443
No 42
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=6.4e-43 Score=419.60 Aligned_cols=338 Identities=24% Similarity=0.364 Sum_probs=265.2
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEE
Q 003881 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPI-ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (789)
Q Consensus 226 sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~-il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl 304 (789)
.|++++||+.+++.+.+.||.+|+|+|.++++. +++++|+|+++|||+|||++|.+|++.++. .+.++|||
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~--------~~~kal~i 73 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA--------RGGKALYI 73 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh--------cCCcEEEE
Confidence 478899999999999999999999999999998 778999999999999999999999999984 25679999
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchh
Q 003881 305 APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM 384 (789)
Q Consensus 305 ~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m 384 (789)
+||++||.|+++.++++.. .++++..++|+...... ....++|+||||+++..++.+....+.++++|||||+|.|
T Consensus 74 ~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l 149 (737)
T PRK02362 74 VPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLI 149 (737)
T ss_pred eChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECcccc
Confidence 9999999999999998753 58999999998754432 2345899999999999998876666889999999999999
Q ss_pred ccCCChHHHHHHHhhc---CCCceEEEEeccCcHHHHHHHHHHhCC-------CeEEeeccc--cCcccceeEEEEecCC
Q 003881 385 FDLGFEPQIRSIVGQI---RPDRQTLLFSATMPRKVEKLAREILSD-------PVRVTVGEV--GMANEDITQVVHVIPS 452 (789)
Q Consensus 385 ~~~~f~~~i~~il~~l---~~~~q~ll~SAT~~~~i~~l~~~~l~~-------p~~i~i~~~--~~~~~~i~q~~~~~~~ 452 (789)
.+.++...+..++.++ .+..|+|++|||+++ ..+++.|+-.. |+.+..+.. ........+.......
T Consensus 150 ~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n-~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~ 228 (737)
T PRK02362 150 DSANRGPTLEVTLAKLRRLNPDLQVVALSATIGN-ADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPS 228 (737)
T ss_pred CCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCC-HHHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccCCCcc
Confidence 9988888888776655 467899999999985 35566655322 111111000 0000000000000001
Q ss_pred CcccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHc------------------------------------CCc
Q 003881 453 DAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK------------------------------------GFK 496 (789)
Q Consensus 453 ~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~------------------------------------g~~ 496 (789)
.......+.+.+. ..+++||||+++..|+.++..|... ...
T Consensus 229 ~~~~~~~~~~~~~---~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~g 305 (737)
T PRK02362 229 KDDTLNLVLDTLE---EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKG 305 (737)
T ss_pred chHHHHHHHHHHH---cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhC
Confidence 1122233333332 4679999999999999998888643 135
Q ss_pred eeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEE----Ec-----CCCCHHHHHHHHhhcCCCC-C
Q 003881 497 AAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN----FD-----IARDMDMHVHRIGRTGRAG-D 566 (789)
Q Consensus 497 v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~----~d-----~p~s~~~yiQriGR~gR~G-~ 566 (789)
++.+|++|++.+|..+++.|++|.++|||||+++++|+|+|.+++||+ || .|.++.+|+||+||+||.| .
T Consensus 306 va~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d 385 (737)
T PRK02362 306 AAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLD 385 (737)
T ss_pred EEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCC
Confidence 889999999999999999999999999999999999999999999997 77 5889999999999999999 3
Q ss_pred CCcEEEEEEcccc
Q 003881 567 KDGTAYTLVTQKE 579 (789)
Q Consensus 567 k~G~~i~lv~~~d 579 (789)
..|.+++++...+
T Consensus 386 ~~G~~ii~~~~~~ 398 (737)
T PRK02362 386 PYGEAVLLAKSYD 398 (737)
T ss_pred CCceEEEEecCch
Confidence 4599999886643
No 43
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1.1e-42 Score=405.81 Aligned_cols=315 Identities=21% Similarity=0.292 Sum_probs=250.2
Q ss_pred cCCCCCcHHHHHHHHHHHcCC-CEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEE-EcCcHHHHHHHHHHHHH
Q 003881 243 QGYEKPTSIQCQALPIILSGR-DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI-CAPTRELAHQIYLETKK 320 (789)
Q Consensus 243 ~g~~~ptpiQ~~~i~~il~gr-dvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLI-l~PtreLa~Qi~~~~~~ 320 (789)
.||. |||||.++|+.++.|+ ++++.++||||||.+++++++... . ....|+.|| ++|||+||.|+++.+.+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~-~-----~~~~~~rLv~~vPtReLa~Qi~~~~~~ 84 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVE-I-----GAKVPRRLVYVVNRRTVVDQVTEEAEK 84 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccc-c-----cccccceEEEeCchHHHHHHHHHHHHH
Confidence 4887 9999999999999998 577789999999997665554321 1 123455666 77999999999999999
Q ss_pred Hhhhc-----------------------CCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhccc---------
Q 003881 321 FAKSH-----------------------GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL--------- 368 (789)
Q Consensus 321 ~~~~~-----------------------~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~--------- 368 (789)
+.+.+ .+++.+++||.....++..+..+++|||+|+ +++.+..+
T Consensus 85 ~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg~~~~ 160 (844)
T TIGR02621 85 IGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYGCGFK 160 (844)
T ss_pred HHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCccccccccccc
Confidence 98755 4889999999999999999999999999995 55555444
Q ss_pred -------ccCceeEEEEeccchhccCCChHHHHHHHhhc--CCC---ceEEEEeccCcHHHHHHHHHHhCCCeEEeeccc
Q 003881 369 -------TMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI--RPD---RQTLLFSATMPRKVEKLAREILSDPVRVTVGEV 436 (789)
Q Consensus 369 -------~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l--~~~---~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~ 436 (789)
.|..+++||||||| ++++|...+..|+..+ ++. +|+++||||++..+..++..++.++..+.+...
T Consensus 161 ~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~ 238 (844)
T TIGR02621 161 SRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKK 238 (844)
T ss_pred cccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccc
Confidence 26889999999999 7889999999999975 332 699999999999888888888888877666544
Q ss_pred cCcccceeEEEEecCCCcccHHHHHHhcCC--CCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHH----
Q 003881 437 GMANEDITQVVHVIPSDAEKLPWLLEKLPG--MIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRM---- 510 (789)
Q Consensus 437 ~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~--~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~---- 510 (789)
......+.+.+ .+ ....|...++..+.. ....+++|||||++..|+.|++.|...++ ..|||+|++.+|.
T Consensus 239 ~l~a~ki~q~v-~v-~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~ 314 (844)
T TIGR02621 239 RLAAKKIVKLV-PP-SDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVK 314 (844)
T ss_pred cccccceEEEE-ec-ChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHH
Confidence 44445555532 22 223344333332211 12356899999999999999999998876 8999999999999
Q ss_pred -HHHHHhhc----CC-------cceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEcc
Q 003881 511 -EILQKFKS----GV-------YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (789)
Q Consensus 511 -~~l~~F~~----G~-------~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~ 577 (789)
.+++.|++ |. ..|||||+++++||||+. ++||++..| ++.|+||+||+||.|.+.+.++++++.
T Consensus 315 ~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 315 KEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred HHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 88999987 44 689999999999999986 899998777 699999999999999544555666644
No 44
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1e-41 Score=417.09 Aligned_cols=402 Identities=18% Similarity=0.231 Sum_probs=299.4
Q ss_pred ChhhcCCCHHHHHHHHHHcCceecc--CCC-----CCCCCCcccCCCCHHHHH-HHHHcCCCCCcHHHHHHHHHHHcC--
Q 003881 193 SASISGMSEQDVMEYKKSLAIRVSG--FDV-----PRPVKTFEDCGFSTQLMH-AISKQGYEKPTSIQCQALPIILSG-- 262 (789)
Q Consensus 193 ~~~i~~~s~~~~~~~r~~~~i~v~~--~~~-----P~pi~sf~~~~l~~~l~~-~l~~~g~~~ptpiQ~~~i~~il~g-- 262 (789)
.+.+.++....|...|++..-.+.. ..+ -+....=..+..+..+.. .....+| .||++|.++|+.++.+
T Consensus 539 ~~~l~~lg~~~w~~~k~~~~~~~~~~a~~l~~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~ 617 (1147)
T PRK10689 539 NAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMC 617 (1147)
T ss_pred CCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhh
Confidence 4557788888898877654222110 000 000000001223334444 4456677 7999999999999987
Q ss_pred ----CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCCh
Q 003881 263 ----RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSK 338 (789)
Q Consensus 263 ----rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~ 338 (789)
+|+|++++||+|||.+|+.+++..+ ..++++|||+||++||.|+++.+++++...++++.+++++.+.
T Consensus 618 ~~~~~d~Ll~a~TGsGKT~val~aa~~~~--------~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~ 689 (1147)
T PRK10689 618 QPLAMDRLVCGDVGFGKTEVAMRAAFLAV--------ENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSA 689 (1147)
T ss_pred cCCCCCEEEEcCCCcCHHHHHHHHHHHHH--------HcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCH
Confidence 8999999999999999998887765 2467899999999999999999999887778899889998887
Q ss_pred HHHHHHH---h-cCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEeccCc
Q 003881 339 LDQFKEL---K-AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (789)
Q Consensus 339 ~~~~~~l---~-~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~ 414 (789)
.++...+ . ..++|||+||+.|. ..+.+.++.+|||||+|++ ++ .....+..++.++|+++||||+.
T Consensus 690 ~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahrf---G~--~~~e~lk~l~~~~qvLl~SATpi 759 (1147)
T PRK10689 690 KEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHRF---GV--RHKERIKAMRADVDILTLTATPI 759 (1147)
T ss_pred HHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhhc---ch--hHHHHHHhcCCCCcEEEEcCCCC
Confidence 6665433 3 35899999996442 3456788999999999995 22 33455677888999999999988
Q ss_pred HHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHc-
Q 003881 415 RKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK- 493 (789)
Q Consensus 415 ~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~- 493 (789)
+....++...+.++..+..... ....+.+.+........+ ..++ .++...++++|||+++..++.+++.|.+.
T Consensus 760 prtl~l~~~gl~d~~~I~~~p~--~r~~v~~~~~~~~~~~~k-~~il---~el~r~gqv~vf~n~i~~ie~la~~L~~~~ 833 (1147)
T PRK10689 760 PRTLNMAMSGMRDLSIIATPPA--RRLAVKTFVREYDSLVVR-EAIL---REILRGGQVYYLYNDVENIQKAAERLAELV 833 (1147)
T ss_pred HHHHHHHHhhCCCcEEEecCCC--CCCCceEEEEecCcHHHH-HHHH---HHHhcCCeEEEEECCHHHHHHHHHHHHHhC
Confidence 8877888888888877754322 123344443332211112 2222 22234679999999999999999999987
Q ss_pred -CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEcCC-CCHHHHHHHHhhcCCCCCCCcEE
Q 003881 494 -GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIA-RDMDMHVHRIGRTGRAGDKDGTA 571 (789)
Q Consensus 494 -g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p-~s~~~yiQriGR~gR~G~k~G~~ 571 (789)
++.+.++||+|++.+|..++..|++|+++|||||+++++|||||++++||+.+.. .+...|+||+||+||.| +.|.|
T Consensus 834 p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g-~~g~a 912 (1147)
T PRK10689 834 PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSH-HQAYA 912 (1147)
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCC-CceEE
Confidence 7899999999999999999999999999999999999999999999999976553 35678999999999999 78999
Q ss_pred EEEEcccc--HHHHHHHHHHHHHcCC---CccHHHHHHHHhcCcccccccccCCCCCCCCCCCCC
Q 003881 572 YTLVTQKE--ARFAGELVNSLIAAGQ---NVSMELMDLAMKDGRFRSKRDARKGGGKKGKGRGGA 631 (789)
Q Consensus 572 i~lv~~~d--~~~~~~lv~~l~~~~q---~vp~~l~~~a~~~~~~~~~~~~r~~g~~~g~g~ggg 631 (789)
|+++.... ...+.+.++.++.... .+...+.|+.. |+.|...|..+.|.
T Consensus 913 ~ll~~~~~~~~~~~~~rl~~~~~~~~lg~gf~~a~~dl~~-----------rg~g~~~g~~q~g~ 966 (1147)
T PRK10689 913 WLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEI-----------RGAGELLGEEQSGQ 966 (1147)
T ss_pred EEEeCCCcccCHHHHHHHHHHHHhcCCcchHHHHHHHHHh-----------cCCccCCCCccCCC
Confidence 98876532 3445555566666555 88778888877 77788887777664
No 45
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=1.7e-41 Score=401.90 Aligned_cols=347 Identities=22% Similarity=0.295 Sum_probs=265.8
Q ss_pred HHHHHHHH-HcCCCCCcHHHHHHHHHHHcC------CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcC
Q 003881 234 TQLMHAIS-KQGYEKPTSIQCQALPIILSG------RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP 306 (789)
Q Consensus 234 ~~l~~~l~-~~g~~~ptpiQ~~~i~~il~g------rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~P 306 (789)
..+.+.+. ..+| +||++|.++++.|+++ .++|++++||||||++|++|++..+ .++.++|||+|
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~--------~~g~q~lilaP 318 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAI--------EAGYQAALMAP 318 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHH--------HcCCeEEEEec
Confidence 34545444 4566 6999999999999977 4899999999999999999999877 34778999999
Q ss_pred cHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHH---HHHHHhcC-CcEEEeChHHHHHHHhhcccccCceeEEEEeccc
Q 003881 307 TRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD---QFKELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD 382 (789)
Q Consensus 307 treLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~---~~~~l~~~-~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah 382 (789)
|++||.|+++.+++++...++++.+++|+.+..+ ++..+..+ ++|||+||+.|.+ ...+.++.+|||||+|
T Consensus 319 T~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~H 393 (681)
T PRK10917 319 TEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQH 393 (681)
T ss_pred cHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechh
Confidence 9999999999999999988999999999988543 34455554 9999999988754 3457889999999999
Q ss_pred hhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHHHHH
Q 003881 383 RMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462 (789)
Q Consensus 383 ~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~ 462 (789)
++ ....+..+......+++|+||||+.+....+ .++.+.....+.........+.+.+... .+...+++
T Consensus 394 rf-----g~~qr~~l~~~~~~~~iL~~SATp~prtl~~--~~~g~~~~s~i~~~p~~r~~i~~~~~~~----~~~~~~~~ 462 (681)
T PRK10917 394 RF-----GVEQRLALREKGENPHVLVMTATPIPRTLAM--TAYGDLDVSVIDELPPGRKPITTVVIPD----SRRDEVYE 462 (681)
T ss_pred hh-----hHHHHHHHHhcCCCCCEEEEeCCCCHHHHHH--HHcCCCceEEEecCCCCCCCcEEEEeCc----ccHHHHHH
Confidence 94 3344445555555789999999986654333 3334333333333333333454443322 22233333
Q ss_pred hcCCC-CCCCCEEEEecccc--------cHHHHHHHHHHc--CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhh
Q 003881 463 KLPGM-IDDGDVLVFASKKT--------TVDEIESQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAA 531 (789)
Q Consensus 463 ~L~~~-~~~~kvLVF~~s~~--------~a~~l~~~L~~~--g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~ 531 (789)
.+... ....+++|||+..+ .+..+++.|... ++.+..+||+|++.+|..+++.|++|+++|||||++++
T Consensus 463 ~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie 542 (681)
T PRK10917 463 RIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIE 542 (681)
T ss_pred HHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECccee
Confidence 33322 24569999999654 355677777765 47899999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEEcCCC-CHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 003881 532 RGLDIKSIKSVVNFDIAR-DMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAM 606 (789)
Q Consensus 532 rGlDI~~v~~VI~~d~p~-s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~l~~~~q~vp~~l~~~a~ 606 (789)
+|+|+|++++||+|++|. ....|.||+||+||.| +.|.||+++.........+.++.|.++...+.....|+..
T Consensus 543 ~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g-~~g~~ill~~~~~~~~~~~rl~~~~~~~dgf~iae~dl~~ 617 (681)
T PRK10917 543 VGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGA-AQSYCVLLYKDPLSETARERLKIMRETNDGFVIAEKDLEL 617 (681)
T ss_pred eCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCC-CceEEEEEECCCCChhHHHHHHHHHHhcchHHHHHHhHhh
Confidence 999999999999999997 4677888999999999 6799999996544445667778898888888777777776
No 46
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=3.3e-42 Score=412.42 Aligned_cols=339 Identities=22% Similarity=0.309 Sum_probs=266.7
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEE
Q 003881 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPI-ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (789)
Q Consensus 226 sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~-il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl 304 (789)
+|+++++++.+.+.|.+.||.+|+|+|.++++. +++++|+++++|||||||++|.+|++.+++. .+.++|||
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~-------~~~~~l~l 74 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR-------EGGKAVYL 74 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh-------cCCeEEEE
Confidence 577889999999999999999999999999985 8899999999999999999999999998754 25689999
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchh
Q 003881 305 APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM 384 (789)
Q Consensus 305 ~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m 384 (789)
+|+++||.|+++.++++. ..++++..++|+...... +...++|+|+||+++..++......+.++++|||||+|.+
T Consensus 75 ~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l 150 (720)
T PRK00254 75 VPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLI 150 (720)
T ss_pred eChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCcc
Confidence 999999999999998864 468999999998765432 2346899999999999988776667899999999999999
Q ss_pred ccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCC-ccc-----HH
Q 003881 385 FDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSD-AEK-----LP 458 (789)
Q Consensus 385 ~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~-~~k-----~~ 458 (789)
.+.++...+..++.++....|+|++|||+++ ...++.++..................+.+.+...... ..+ ..
T Consensus 151 ~~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~wl~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (720)
T PRK00254 151 GSYDRGATLEMILTHMLGRAQILGLSATVGN-AEELAEWLNAELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWES 229 (720)
T ss_pred CCccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHHHhCCccccCCCCCCcceeeEecCCeeeccCcchhcchHHHHH
Confidence 9999999999999999999999999999986 4667765533221111100000000011111111111 011 12
Q ss_pred HHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHc---------------------------------CCceeeccCCCC
Q 003881 459 WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK---------------------------------GFKAAALHGDKD 505 (789)
Q Consensus 459 ~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~---------------------------------g~~v~~lhg~~~ 505 (789)
.+.+.+. ..+++||||+++..|+.++..|... ...+..+|++|+
T Consensus 230 ~~~~~i~---~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~ 306 (720)
T PRK00254 230 LVYDAVK---KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLG 306 (720)
T ss_pred HHHHHHH---hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCC
Confidence 2233333 3569999999999998887666421 235899999999
Q ss_pred HHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEE-------EcCCC-CHHHHHHHHhhcCCCC-CCCcEEEEEEc
Q 003881 506 QASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN-------FDIAR-DMDMHVHRIGRTGRAG-DKDGTAYTLVT 576 (789)
Q Consensus 506 ~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~-------~d~p~-s~~~yiQriGR~gR~G-~k~G~~i~lv~ 576 (789)
+.+|..+++.|++|.++|||||+++++|+|+|.+++||. ++.|. .+.+|+||+||+||.| ...|.+++++.
T Consensus 307 ~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~ 386 (720)
T PRK00254 307 RTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVAT 386 (720)
T ss_pred HHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEec
Confidence 999999999999999999999999999999999999994 44444 4679999999999987 45799999987
Q ss_pred ccc
Q 003881 577 QKE 579 (789)
Q Consensus 577 ~~d 579 (789)
..+
T Consensus 387 ~~~ 389 (720)
T PRK00254 387 TEE 389 (720)
T ss_pred Ccc
Confidence 655
No 47
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=4e-42 Score=403.96 Aligned_cols=326 Identities=21% Similarity=0.361 Sum_probs=261.1
Q ss_pred HHHH-cCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHH
Q 003881 239 AISK-QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLE 317 (789)
Q Consensus 239 ~l~~-~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~ 317 (789)
.|++ .||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++.+ +..+|||+|+++|+.|++..
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~-----------~g~~lVisPl~sL~~dq~~~ 72 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL-----------KGLTVVISPLISLMKDQVDQ 72 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc-----------CCcEEEEcCCHHHHHHHHHH
Confidence 3443 69999999999999999999999999999999999999999843 23589999999999999888
Q ss_pred HHHHhhhcCCeEEEEECCCChHHHHHH---Hh-cCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCC--ChH
Q 003881 318 TKKFAKSHGIRVSAVYGGMSKLDQFKE---LK-AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG--FEP 391 (789)
Q Consensus 318 ~~~~~~~~~i~v~~~~gg~~~~~~~~~---l~-~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~--f~~ 391 (789)
++.+ ++.+..+.++....+.... +. ...+|+++||++|........+...++++|||||||++.+|+ |.+
T Consensus 73 l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp 148 (591)
T TIGR01389 73 LRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRP 148 (591)
T ss_pred HHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHH
Confidence 8775 7888888888776544322 22 358999999999975443444556789999999999999987 666
Q ss_pred HHHHH---HhhcCCCceEEEEeccCcHHHHHHHHHHhC--CCeEEeeccccCcccceeEEEEecCCCcccHHHHHHhcCC
Q 003881 392 QIRSI---VGQIRPDRQTLLFSATMPRKVEKLAREILS--DPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPG 466 (789)
Q Consensus 392 ~i~~i---l~~l~~~~q~ll~SAT~~~~i~~l~~~~l~--~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~ 466 (789)
.+..+ ...+ +..+++++|||+++.+...+...+. ++..+ +. .....++... .. ....+...+.+.+..
T Consensus 149 ~y~~l~~l~~~~-~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~-~~--~~~r~nl~~~--v~-~~~~~~~~l~~~l~~ 221 (591)
T TIGR01389 149 EYQRLGSLAERF-PQVPRIALTATADAETRQDIRELLRLADANEF-IT--SFDRPNLRFS--VV-KKNNKQKFLLDYLKK 221 (591)
T ss_pred HHHHHHHHHHhC-CCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeE-ec--CCCCCCcEEE--EE-eCCCHHHHHHHHHHh
Confidence 55544 3333 3455999999999888766666654 23222 11 1122223222 22 234566677777765
Q ss_pred CCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEc
Q 003881 467 MIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFD 546 (789)
Q Consensus 467 ~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d 546 (789)
.. ..++||||+++..++.+++.|...++.+..+|++|+..+|..+++.|.+|+++|||||+++++|||+|+|++||+|+
T Consensus 222 ~~-~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~ 300 (591)
T TIGR01389 222 HR-GQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYD 300 (591)
T ss_pred cC-CCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcC
Confidence 32 56899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHH
Q 003881 547 IARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVN 588 (789)
Q Consensus 547 ~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~ 588 (789)
+|.+++.|+|++||+||.| +.+.|++|++..|...+..+++
T Consensus 301 ~p~s~~~y~Q~~GRaGR~G-~~~~~il~~~~~d~~~~~~~i~ 341 (591)
T TIGR01389 301 MPGNLESYYQEAGRAGRDG-LPAEAILLYSPADIALLKRRIE 341 (591)
T ss_pred CCCCHHHHhhhhccccCCC-CCceEEEecCHHHHHHHHHHHh
Confidence 9999999999999999999 7899999999888876665543
No 48
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=3.2e-41 Score=397.15 Aligned_cols=359 Identities=20% Similarity=0.269 Sum_probs=268.4
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHcC------CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcH
Q 003881 235 QLMHAISKQGYEKPTSIQCQALPIILSG------RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTR 308 (789)
Q Consensus 235 ~l~~~l~~~g~~~ptpiQ~~~i~~il~g------rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~Ptr 308 (789)
.+.+.+...+| +||++|.++|+.|+++ .+.|++++||||||++|++|++..+. ++.++|||+||+
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~--------~g~qvlilaPT~ 294 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE--------AGYQVALMAPTE 294 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH--------cCCcEEEECCHH
Confidence 34456667788 7999999999999976 36899999999999999999998762 467899999999
Q ss_pred HHHHHHHHHHHHHhhhcCCeEEEEECCCChHH---HHHHHhc-CCcEEEeChHHHHHHHhhcccccCceeEEEEeccchh
Q 003881 309 ELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD---QFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM 384 (789)
Q Consensus 309 eLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~---~~~~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m 384 (789)
+||.|+++.+++++...++++.+++|+....+ .+..+.. .++|||+||+.|.+ ...+.++.+|||||+|++
T Consensus 295 ~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~f 369 (630)
T TIGR00643 295 ILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRF 369 (630)
T ss_pred HHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhc
Confidence 99999999999999988999999999987654 3444443 47999999988754 345788999999999984
Q ss_pred ccCCChHHHHH-HHhhcC--CCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHHHH
Q 003881 385 FDLGFEPQIRS-IVGQIR--PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLL 461 (789)
Q Consensus 385 ~~~~f~~~i~~-il~~l~--~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~ 461 (789)
. ...+. ++.... ..+|+|+||||+.+....+ ....+.....+.........+...+... .....++
T Consensus 370 g-----~~qr~~l~~~~~~~~~~~~l~~SATp~prtl~l--~~~~~l~~~~i~~~p~~r~~i~~~~~~~----~~~~~~~ 438 (630)
T TIGR00643 370 G-----VEQRKKLREKGQGGFTPHVLVMSATPIPRTLAL--TVYGDLDTSIIDELPPGRKPITTVLIKH----DEKDIVY 438 (630)
T ss_pred c-----HHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHH--HhcCCcceeeeccCCCCCCceEEEEeCc----chHHHHH
Confidence 2 22222 323222 2678999999976543322 2333322222222222223344433221 1223444
Q ss_pred HhcCCC-CCCCCEEEEecccc--------cHHHHHHHHHHc--CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhh
Q 003881 462 EKLPGM-IDDGDVLVFASKKT--------TVDEIESQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530 (789)
Q Consensus 462 ~~L~~~-~~~~kvLVF~~s~~--------~a~~l~~~L~~~--g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~ 530 (789)
..+.+. ....+++|||+..+ .++.+++.|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++
T Consensus 439 ~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vi 518 (630)
T TIGR00643 439 EFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVI 518 (630)
T ss_pred HHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcee
Confidence 444332 24568999999764 455677777653 6889999999999999999999999999999999999
Q ss_pred hccCCCCCccEEEEEcCCC-CHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHHHHHHcCCCccHHHHHHHHhcC
Q 003881 531 ARGLDIKSIKSVVNFDIAR-DMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMKDG 609 (789)
Q Consensus 531 ~rGlDI~~v~~VI~~d~p~-s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~l~~~~q~vp~~l~~~a~~~~ 609 (789)
++|+|+|++++||+|+.|. ....|.||+||+||.| +.|.|++++.........+.++.|....+.+.....|+..
T Consensus 519 e~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g-~~g~~il~~~~~~~~~~~~rl~~~~~~~dgf~iae~dl~~--- 594 (630)
T TIGR00643 519 EVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGD-HQSYCLLVYKNPKSESAKKRLRVMADTLDGFVIAEEDLEL--- 594 (630)
T ss_pred ecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCC-CCcEEEEEECCCCCHHHHHHHHHHHhhcccHHHHHHHHhc---
Confidence 9999999999999999987 5778888999999998 6899999995444445556678888888888777777776
Q ss_pred cccccccccCCCCCCCCCCCC
Q 003881 610 RFRSKRDARKGGGKKGKGRGG 630 (789)
Q Consensus 610 ~~~~~~~~r~~g~~~g~g~gg 630 (789)
|+.|...|..+.|
T Consensus 595 --------Rg~g~~~g~~QsG 607 (630)
T TIGR00643 595 --------RGPGDLLGTKQSG 607 (630)
T ss_pred --------CCCcccCCCcccC
Confidence 5566666655544
No 49
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-43 Score=346.99 Aligned_cols=333 Identities=29% Similarity=0.501 Sum_probs=282.7
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEE
Q 003881 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (789)
Q Consensus 225 ~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl 304 (789)
.-|.++-|++++++++...||..|..+|.+|||...-|.|+++.|..|.|||.+|++.-|+.+--- ...-.+|++
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv-----~g~vsvlvm 116 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPV-----DGQVSVLVM 116 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCC-----CCeEEEEEE
Confidence 457888899999999999999999999999999999999999999999999999999998876211 123458999
Q ss_pred cCcHHHHHHHHHHHHHHhhhc-CCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccch
Q 003881 305 APTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (789)
Q Consensus 305 ~PtreLa~Qi~~~~~~~~~~~-~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~ 383 (789)
|.||+||.||..+..+|.+.. ++++.+++||.........+++.++|+|+||++++.+++.+.++|..++.+|+||||.
T Consensus 117 chtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdk 196 (387)
T KOG0329|consen 117 CHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDK 196 (387)
T ss_pred eccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHH
Confidence 999999999999999998864 6899999999999888888888899999999999999999999999999999999998
Q ss_pred hcc-CCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccc-cCcccceeEEEEecCCCcccHHHHH
Q 003881 384 MFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEV-GMANEDITQVVHVIPSDAEKLPWLL 461 (789)
Q Consensus 384 m~~-~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~-~~~~~~i~q~~~~~~~~~~k~~~L~ 461 (789)
|+. .+....+..|++..+...|+++||||++++++..+++|+.+|..+.+... ......+.|.+..+. +..|...|.
T Consensus 197 mle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLk-e~eKNrkl~ 275 (387)
T KOG0329|consen 197 MLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLK-ENEKNRKLN 275 (387)
T ss_pred HHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhh-hhhhhhhhh
Confidence 875 35677888999999999999999999999999999999999998887654 344556666665553 456666666
Q ss_pred HhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccE
Q 003881 462 EKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKS 541 (789)
Q Consensus 462 ~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~ 541 (789)
++|..+ .-++++||+.+... +. | ..+ ||||++.+||+||..++.
T Consensus 276 dLLd~L-eFNQVvIFvKsv~R------------------------------l~-f---~kr-~vat~lfgrgmdiervNi 319 (387)
T KOG0329|consen 276 DLLDVL-EFNQVVIFVKSVQR------------------------------LS-F---QKR-LVATDLFGRGMDIERVNI 319 (387)
T ss_pred hhhhhh-hhcceeEeeehhhh------------------------------hh-h---hhh-hHHhhhhccccCccccee
Confidence 666543 45699999988654 01 3 223 899999999999999999
Q ss_pred EEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEcc-ccHHHHHHHHHHHHHcCCCccHH
Q 003881 542 VVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ-KEARFAGELVNSLIAAGQNVSME 600 (789)
Q Consensus 542 VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~-~d~~~~~~lv~~l~~~~q~vp~~ 600 (789)
|||||+|.+.++|+||+||+||.| ..|.+++|++. ++...+..+....+.....+|.+
T Consensus 320 ~~NYdmp~~~DtYlHrv~rAgrfG-tkglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 320 VFNYDMPEDSDTYLHRVARAGRFG-TKGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred eeccCCCCCchHHHHHhhhhhccc-cccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 999999999999999999999999 67999999986 46666776666666666666665
No 50
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=2.5e-40 Score=394.40 Aligned_cols=334 Identities=21% Similarity=0.305 Sum_probs=256.3
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEc
Q 003881 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305 (789)
Q Consensus 226 sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~ 305 (789)
.|++++|++.+++.+.+.+|. |+|+|.++++.+++++++++++|||||||+++.++++.++.. +.++|||+
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~--------~~k~v~i~ 72 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA--------GLKSIYIV 72 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh--------CCcEEEEe
Confidence 477889999999999999986 999999999999999999999999999999999999988743 45799999
Q ss_pred CcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhc
Q 003881 306 PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (789)
Q Consensus 306 PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~ 385 (789)
|+++||.|++++++++. ..++++...+|+...... ....++|+|+||+++..++.+....+.++++|||||||++.
T Consensus 73 P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~ 148 (674)
T PRK01172 73 PLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIG 148 (674)
T ss_pred chHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhcc
Confidence 99999999999999864 468888888887654322 23468999999999999887766678899999999999999
Q ss_pred cCCChHHHHHHHhh---cCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEE-----EecCCCcccH
Q 003881 386 DLGFEPQIRSIVGQ---IRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVV-----HVIPSDAEKL 457 (789)
Q Consensus 386 ~~~f~~~i~~il~~---l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~-----~~~~~~~~k~ 457 (789)
+.++...+..++.. ++++.|+|++|||+++ ..+++.++.......... ...+...+ ..+.......
T Consensus 149 d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~wl~~~~~~~~~r-----~vpl~~~i~~~~~~~~~~~~~~~ 222 (674)
T PRK01172 149 DEDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQWLNASLIKSNFR-----PVPLKLGILYRKRLILDGYERSQ 222 (674)
T ss_pred CCCccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHHHhCCCccCCCCC-----CCCeEEEEEecCeeeeccccccc
Confidence 88888777776654 4578899999999975 466666553322111110 00111100 0111111011
Q ss_pred HHHHHhcCC-CCCCCCEEEEecccccHHHHHHHHHHc-------------------------CCceeeccCCCCHHHHHH
Q 003881 458 PWLLEKLPG-MIDDGDVLVFASKKTTVDEIESQLAQK-------------------------GFKAAALHGDKDQASRME 511 (789)
Q Consensus 458 ~~L~~~L~~-~~~~~kvLVF~~s~~~a~~l~~~L~~~-------------------------g~~v~~lhg~~~~~eR~~ 511 (789)
..+...+.+ ....+++||||+++..|+.++..|... ...+..+|++|++.+|..
T Consensus 223 ~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ 302 (674)
T PRK01172 223 VDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRF 302 (674)
T ss_pred ccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHH
Confidence 112222222 124679999999999999999988653 124788999999999999
Q ss_pred HHHHhhcCCcceEEeehhhhccCCCCCccEEEEEcC---------CCCHHHHHHHHhhcCCCC-CCCcEEEEEEcccc
Q 003881 512 ILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDI---------ARDMDMHVHRIGRTGRAG-DKDGTAYTLVTQKE 579 (789)
Q Consensus 512 ~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~---------p~s~~~yiQriGR~gR~G-~k~G~~i~lv~~~d 579 (789)
+++.|++|.++|||||+++++|+|+|+. .||+++. |.++.+|.||+||+||.| +..|.+++++...+
T Consensus 303 ve~~f~~g~i~VLvaT~~la~Gvnipa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~ 379 (674)
T PRK01172 303 IEEMFRNRYIKVIVATPTLAAGVNLPAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPA 379 (674)
T ss_pred HHHHHHcCCCeEEEecchhhccCCCcce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcc
Confidence 9999999999999999999999999986 5555443 457889999999999998 44677888765443
No 51
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=2.2e-38 Score=388.64 Aligned_cols=302 Identities=24% Similarity=0.316 Sum_probs=246.0
Q ss_pred HHHHc-CCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHH
Q 003881 239 AISKQ-GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLE 317 (789)
Q Consensus 239 ~l~~~-g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~ 317 (789)
.+++. |+ .||++|.+++|.++.|+|++++||||+|||+ |+++++.++. ..++++|||+|||+||.|+++.
T Consensus 72 ~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~-------~~g~~alIL~PTreLa~Qi~~~ 142 (1176)
T PRK09401 72 FFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLA-------KKGKKSYIIFPTRLLVEQVVEK 142 (1176)
T ss_pred HHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHH-------hcCCeEEEEeccHHHHHHHHHH
Confidence 34343 66 8999999999999999999999999999996 5666655542 2378899999999999999999
Q ss_pred HHHHhhhcCCeEEEEECCCC-----hHHHHHHHhc-CCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhcc-----
Q 003881 318 TKKFAKSHGIRVSAVYGGMS-----KLDQFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD----- 386 (789)
Q Consensus 318 ~~~~~~~~~i~v~~~~gg~~-----~~~~~~~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~----- 386 (789)
+++++...++.+..++|+.. ..++...+.. .++|+|+||++|.+.+. .+.+..+++|||||||+|++
T Consensus 143 l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~i 220 (1176)
T PRK09401 143 LEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNI 220 (1176)
T ss_pred HHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccch
Confidence 99999988888888877654 2233444554 58999999999999876 45566799999999999986
Q ss_pred ------CCCh-HHHHHHHhhcCC------------------------CceEEEEeccCcHH-HHHHHHHHhCCCeEEeec
Q 003881 387 ------LGFE-PQIRSIVGQIRP------------------------DRQTLLFSATMPRK-VEKLAREILSDPVRVTVG 434 (789)
Q Consensus 387 ------~~f~-~~i~~il~~l~~------------------------~~q~ll~SAT~~~~-i~~l~~~~l~~p~~i~i~ 434 (789)
+||. ..+..++..++. .+|+++||||+++. +.. .++.++..+.++
T Consensus 221 d~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~ 297 (1176)
T PRK09401 221 DKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVG 297 (1176)
T ss_pred hhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEec
Confidence 6785 678777777764 68999999999864 332 344555566676
Q ss_pred cccCcccceeEEEEecCCCcccHHHHHHhcCCCCCCCCEEEEeccccc---HHHHHHHHHHcCCceeeccCCCCHHHHHH
Q 003881 435 EVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTT---VDEIESQLAQKGFKAAALHGDKDQASRME 511 (789)
Q Consensus 435 ~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~---a~~l~~~L~~~g~~v~~lhg~~~~~eR~~ 511 (789)
.......+|.+.+..+. .+...|.+++... ..++||||+++.. ++.|+++|...|+++..+||+| .+
T Consensus 298 ~~~~~~rnI~~~yi~~~---~k~~~L~~ll~~l--~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~ 367 (1176)
T PRK09401 298 SPVFYLRNIVDSYIVDE---DSVEKLVELVKRL--GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ER 367 (1176)
T ss_pred CcccccCCceEEEEEcc---cHHHHHHHHHHhc--CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HH
Confidence 66666677888776554 5666777777654 3589999999888 9999999999999999999999 23
Q ss_pred HHHHhhcCCcceEEe----ehhhhccCCCCC-ccEEEEEcCCC------CHHHHHHHHhhcCCC
Q 003881 512 ILQKFKSGVYHVLIA----TDVAARGLDIKS-IKSVVNFDIAR------DMDMHVHRIGRTGRA 564 (789)
Q Consensus 512 ~l~~F~~G~~~VLVa----T~v~~rGlDI~~-v~~VI~~d~p~------s~~~yiQriGR~gR~ 564 (789)
.++.|++|+++|||| |++++||||||+ |++||||++|. ..+.|.||+||+...
T Consensus 368 ~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 368 KFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred HHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 469999999999999 699999999999 89999999999 678899999999754
No 52
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=3.3e-38 Score=366.57 Aligned_cols=341 Identities=23% Similarity=0.316 Sum_probs=273.7
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHH
Q 003881 231 GFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTREL 310 (789)
Q Consensus 231 ~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreL 310 (789)
-|++.+.+.+... |..|||.|.+|||.|++|+|+|++||||||||++++||+++.+++........+-.+|+|.|.++|
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKAL 85 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHH
Confidence 3788899999888 999999999999999999999999999999999999999999998743333456789999999999
Q ss_pred HHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhc--ccccCceeEEEEeccchhccCC
Q 003881 311 AHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK--ALTMSRVTYLVLDEADRMFDLG 388 (789)
Q Consensus 311 a~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~--~~~l~~i~~lVvDEah~m~~~~ 388 (789)
...+...+..+...+|+.+.+.+|.++..+..+.+++.+||+|+||+.|.-++... .-.|.++.+|||||+|.+.+..
T Consensus 86 n~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 86 NNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccc
Confidence 99999999999999999999999999988887788888999999999998888653 2358899999999999998877
Q ss_pred ChHHHHHHHhhc---CCCceEEEEeccCcHHHHHHHHHHhCC--CeEEeeccccCcccceeEEEEecC--CC----cccH
Q 003881 389 FEPQIRSIVGQI---RPDRQTLLFSATMPRKVEKLAREILSD--PVRVTVGEVGMANEDITQVVHVIP--SD----AEKL 457 (789)
Q Consensus 389 f~~~i~~il~~l---~~~~q~ll~SAT~~~~i~~l~~~~l~~--p~~i~i~~~~~~~~~i~q~~~~~~--~~----~~k~ 457 (789)
.+.++...+.++ .++.|.|++|||..+ ...+++++... +..|.. .......++.-..-... .. ....
T Consensus 166 RG~~Lsl~LeRL~~l~~~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~-~~~~k~~~i~v~~p~~~~~~~~~~~~~~~ 243 (814)
T COG1201 166 RGVQLALSLERLRELAGDFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVD-VSAAKKLEIKVISPVEDLIYDEELWAALY 243 (814)
T ss_pred cchhhhhhHHHHHhhCcccEEEeehhccCC-HHHHHHHhcCCCCceEEEE-cccCCcceEEEEecCCccccccchhHHHH
Confidence 666665444433 348899999999873 35566666655 333322 11112222221111110 01 1123
Q ss_pred HHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcC-CceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCC
Q 003881 458 PWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKG-FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDI 536 (789)
Q Consensus 458 ~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g-~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI 536 (789)
..+.+++++ ...+|||+||+..++.++..|++.+ ..+..+||.++..+|..+.++|++|+.+++|||+.++-||||
T Consensus 244 ~~i~~~v~~---~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDi 320 (814)
T COG1201 244 ERIAELVKK---HRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDI 320 (814)
T ss_pred HHHHHHHhh---cCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhcccc
Confidence 333444433 3479999999999999999999987 899999999999999999999999999999999999999999
Q ss_pred CCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEcc
Q 003881 537 KSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (789)
Q Consensus 537 ~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~ 577 (789)
.+++.||+|..|.++...+||+||+|+.-......+.+...
T Consensus 321 G~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 321 GDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred CCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 99999999999999999999999999765344555555444
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1e-37 Score=383.14 Aligned_cols=303 Identities=21% Similarity=0.274 Sum_probs=226.6
Q ss_pred EEccCCChhhHHHHHHHHHHHhcCccc-----cccCCCeEEEEcCcHHHHHHHHHHHHHHhh------------hcCCeE
Q 003881 267 GIAKTGSGKTAAFVLPMIVHIMDQPEL-----QKEEGPIGVICAPTRELAHQIYLETKKFAK------------SHGIRV 329 (789)
Q Consensus 267 l~a~TGsGKTla~llpil~~l~~~~~~-----~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~------------~~~i~v 329 (789)
+++|||||||++|.||+|..++.++.. ...++.++|||+|+++|+.|+.+.++..+. ..++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999999865321 123468999999999999999998875321 246899
Q ss_pred EEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhc-ccccCceeEEEEeccchhccCCChHH----HHHHHhhcCCCc
Q 003881 330 SAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK-ALTMSRVTYLVLDEADRMFDLGFEPQ----IRSIVGQIRPDR 404 (789)
Q Consensus 330 ~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~-~~~l~~i~~lVvDEah~m~~~~f~~~----i~~il~~l~~~~ 404 (789)
...+|+.+..++.+.+++.++|||+||++|..++.++ ...++++++|||||+|.|.+..+..+ +..+...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 9999999888877777778999999999999887653 34689999999999999997655444 444444556778
Q ss_pred eEEEEeccCcHHHHHHHHHHhC-CCeEEeeccccCcccceeEEEEecCCCc-------------------ccHHHH-HHh
Q 003881 405 QTLLFSATMPRKVEKLAREILS-DPVRVTVGEVGMANEDITQVVHVIPSDA-------------------EKLPWL-LEK 463 (789)
Q Consensus 405 q~ll~SAT~~~~i~~l~~~~l~-~p~~i~i~~~~~~~~~i~q~~~~~~~~~-------------------~k~~~L-~~~ 463 (789)
|+|+||||+++ .+++++++.. .++.+.. ........+. .+....... .....+ ..+
T Consensus 161 QrIgLSATI~n-~eevA~~L~g~~pv~Iv~-~~~~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVAAFLGGDRPVTVVN-PPAMRHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCC-HHHHHHHhcCCCCEEEEC-CCCCcccceE-EEEecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 99999999987 4667765544 3555432 1111112222 111111100 000111 112
Q ss_pred cCCCCCCCCEEEEecccccHHHHHHHHHHcC---------------------------------CceeeccCCCCHHHHH
Q 003881 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKG---------------------------------FKAAALHGDKDQASRM 510 (789)
Q Consensus 464 L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g---------------------------------~~v~~lhg~~~~~eR~ 510 (789)
+.......++|||||++..|+.++..|++.. +.+..+||+|++.+|.
T Consensus 238 l~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 238 LDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 2222245689999999999999999997631 1256899999999999
Q ss_pred HHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEE
Q 003881 511 EILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAY 572 (789)
Q Consensus 511 ~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i 572 (789)
.+++.|++|++++||||+.+++||||+.+++||+|+.|.++..|+||+||+||.....+.++
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gl 379 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGL 379 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEE
Confidence 99999999999999999999999999999999999999999999999999999742233444
No 54
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=5.5e-38 Score=365.14 Aligned_cols=311 Identities=18% Similarity=0.219 Sum_probs=234.4
Q ss_pred HHHHHHHHHHHcCCCEEEEccCCChhhHH---------HHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHH
Q 003881 250 SIQCQALPIILSGRDIIGIAKTGSGKTAA---------FVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK 320 (789)
Q Consensus 250 piQ~~~i~~il~grdvll~a~TGsGKTla---------~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~ 320 (789)
.+|.++++.+++++++|++|+||||||.+ |++|.+..+.... .....+.++|++|||+||.|+...+.+
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~--~~~~~~~ilvt~PrreLa~qi~~~i~~ 244 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID--PNFIERPIVLSLPRVALVRLHSITLLK 244 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc--cccCCcEEEEECcHHHHHHHHHHHHHH
Confidence 58999999999999999999999999987 3344444432110 012356799999999999999999887
Q ss_pred Hhhh---cCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHH
Q 003881 321 FAKS---HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIV 397 (789)
Q Consensus 321 ~~~~---~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il 397 (789)
.... .++.+.+.+||... .+........+|+|+|++. ....|..+++|||||||++...+ ..+..++
T Consensus 245 ~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L-------~l~~L~~v~~VVIDEaHEr~~~~--DllL~ll 314 (675)
T PHA02653 245 SLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKL-------TLNKLFDYGTVIIDEVHEHDQIG--DIIIAVA 314 (675)
T ss_pred HhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcc-------cccccccCCEEEccccccCccch--hHHHHHH
Confidence 6543 35677889999873 2222233468999999752 12257889999999999987764 4555666
Q ss_pred hhcC-CCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCC---------CcccHHHHHHhcCCC
Q 003881 398 GQIR-PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPS---------DAEKLPWLLEKLPGM 467 (789)
Q Consensus 398 ~~l~-~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~---------~~~k~~~L~~~L~~~ 467 (789)
..+. ..+|+++||||++.++..+ ..++.+|..+.+.. .....|.+.+..... ...+ ..++..+...
T Consensus 315 k~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~g--rt~~pV~~~yi~~~~~~~~~~~y~~~~k-~~~l~~L~~~ 390 (675)
T PHA02653 315 RKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPG--GTLFPISEVYVKNKYNPKNKRAYIEEEK-KNIVTALKKY 390 (675)
T ss_pred HHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCC--CcCCCeEEEEeecCcccccchhhhHHHH-HHHHHHHHHh
Confidence 5443 3469999999999888776 57888888887642 233456555432211 0111 1223333221
Q ss_pred --CCCCCEEEEecccccHHHHHHHHHHc--CCceeeccCCCCHHHHHHHHHHh-hcCCcceEEeehhhhccCCCCCccEE
Q 003881 468 --IDDGDVLVFASKKTTVDEIESQLAQK--GFKAAALHGDKDQASRMEILQKF-KSGVYHVLIATDVAARGLDIKSIKSV 542 (789)
Q Consensus 468 --~~~~kvLVF~~s~~~a~~l~~~L~~~--g~~v~~lhg~~~~~eR~~~l~~F-~~G~~~VLVaT~v~~rGlDI~~v~~V 542 (789)
...+.+||||+++.+++.+++.|.+. ++.+..|||+|++. +++++.| ++|+.+|||||++++||||||+|++|
T Consensus 391 ~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~V 468 (675)
T PHA02653 391 TPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHV 468 (675)
T ss_pred hcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEE
Confidence 13468999999999999999999887 79999999999985 5677787 68999999999999999999999999
Q ss_pred EEEc---CCC---------CHHHHHHHHhhcCCCCCCCcEEEEEEccccH
Q 003881 543 VNFD---IAR---------DMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (789)
Q Consensus 543 I~~d---~p~---------s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~ 580 (789)
|+++ .|. +...|+||+||+||.. .|.||.|+++.+.
T Consensus 469 ID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~~--~G~c~rLyt~~~~ 516 (675)
T PHA02653 469 YDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRVS--PGTYVYFYDLDLL 516 (675)
T ss_pred EECCCccCCCcccCcccccCHHHHHHhccCcCCCC--CCeEEEEECHHHh
Confidence 9998 554 7889999999999994 7999999998764
No 55
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=8.3e-39 Score=333.92 Aligned_cols=278 Identities=34% Similarity=0.507 Sum_probs=230.5
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHHhhhc---CCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeE
Q 003881 299 PIGVICAPTRELAHQIYLETKKFAKSH---GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTY 375 (789)
Q Consensus 299 p~vLIl~PtreLa~Qi~~~~~~~~~~~---~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~ 375 (789)
|.+||+-|.|+|+.|.++.+++|-... .++..++.||...+.|...+..+.+|||+||+||.+.+....+.|..+.+
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crF 366 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRF 366 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEE
Confidence 789999999999999999777775433 46777899999999999999999999999999999999999999999999
Q ss_pred EEEeccchhccCCChHHHHHHHhhcCC------CceEEEEeccCc-HHHHHHHHHHhCCCeEEeeccccCcccceeEEEE
Q 003881 376 LVLDEADRMFDLGFEPQIRSIVGQIRP------DRQTLLFSATMP-RKVEKLAREILSDPVRVTVGEVGMANEDITQVVH 448 (789)
Q Consensus 376 lVvDEah~m~~~~f~~~i~~il~~l~~------~~q~ll~SAT~~-~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~ 448 (789)
+|+|||+.++..++...|..+...++. ..|.++.|||+. -++..+...++.-|..+.........+.+.+.+.
T Consensus 367 lvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~ 446 (725)
T KOG0349|consen 367 LVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVK 446 (725)
T ss_pred EEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhcccee
Confidence 999999999999999999988888763 468999999974 2455667778888888877666666555555443
Q ss_pred ecCC-CcccHHHH----------------------------HHhcCC--------CCCCCCEEEEecccccHHHHHHHHH
Q 003881 449 VIPS-DAEKLPWL----------------------------LEKLPG--------MIDDGDVLVFASKKTTVDEIESQLA 491 (789)
Q Consensus 449 ~~~~-~~~k~~~L----------------------------~~~L~~--------~~~~~kvLVF~~s~~~a~~l~~~L~ 491 (789)
.+.. -...+..| ..+|+. ...-.+.||||.++.+|+.|..+|.
T Consensus 447 lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~ 526 (725)
T KOG0349|consen 447 LVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMN 526 (725)
T ss_pred ecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHH
Confidence 3321 11111111 111110 0012479999999999999999999
Q ss_pred HcC---CceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCC
Q 003881 492 QKG---FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKD 568 (789)
Q Consensus 492 ~~g---~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~ 568 (789)
+.+ +.|+++||+..+.+|...++.|+.+.+++||||++++|||||.++-.|||..+|..-..|+|||||+||+. +-
T Consensus 527 qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgrae-rm 605 (725)
T KOG0349|consen 527 QKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAE-RM 605 (725)
T ss_pred HcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhh-hc
Confidence 874 78999999999999999999999999999999999999999999999999999999999999999999998 78
Q ss_pred cEEEEEEcc
Q 003881 569 GTAYTLVTQ 577 (789)
Q Consensus 569 G~~i~lv~~ 577 (789)
|.+|.|+..
T Consensus 606 glaislvat 614 (725)
T KOG0349|consen 606 GLAISLVAT 614 (725)
T ss_pred ceeEEEeec
Confidence 999998743
No 56
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=6.5e-37 Score=382.62 Aligned_cols=327 Identities=21% Similarity=0.258 Sum_probs=252.1
Q ss_pred HHHHHHHH-cCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHH
Q 003881 235 QLMHAISK-QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQ 313 (789)
Q Consensus 235 ~l~~~l~~-~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Q 313 (789)
.+.+.+++ .|| .||++|+++++.+++|+|++++||||+|||++++++++... ..++++|||+||++|+.|
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~--------~~g~~aLVl~PTreLa~Q 137 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA--------LKGKKCYIILPTTLLVKQ 137 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH--------hcCCeEEEEECHHHHHHH
Confidence 34455655 689 69999999999999999999999999999996666555432 236789999999999999
Q ss_pred HHHHHHHHhhhc--CCeEEEEECCCChHHHH---HHHhcC-CcEEEeChHHHHHHHhhcccccCceeEEEEeccchhcc-
Q 003881 314 IYLETKKFAKSH--GIRVSAVYGGMSKLDQF---KELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD- 386 (789)
Q Consensus 314 i~~~~~~~~~~~--~i~v~~~~gg~~~~~~~---~~l~~~-~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~- 386 (789)
+++.++.++... ++++.+++|+.+..++. ..+..+ ++|||+||++|.+.+... ....+++|||||||+|++
T Consensus 138 i~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD~ml~~ 215 (1638)
T PRK14701 138 TVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVDAFLKA 215 (1638)
T ss_pred HHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECceecccc
Confidence 999999998765 46778888998876653 345554 899999999998876532 226789999999999986
Q ss_pred ----------CCChHHHHH----HHh----------------------hcCCCce-EEEEeccCcHHHHHHHHHHhCCCe
Q 003881 387 ----------LGFEPQIRS----IVG----------------------QIRPDRQ-TLLFSATMPRKVEKLAREILSDPV 429 (789)
Q Consensus 387 ----------~~f~~~i~~----il~----------------------~l~~~~q-~ll~SAT~~~~i~~l~~~~l~~p~ 429 (789)
+||.+.+.. ++. .++..+| ++++|||+++.. ....++.++.
T Consensus 216 ~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~--~~~~l~~~~l 293 (1638)
T PRK14701 216 SKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKG--DRVKLYRELL 293 (1638)
T ss_pred ccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchh--HHHHHhhcCe
Confidence 578877764 332 2344555 677999998631 1224456777
Q ss_pred EEeeccccCcccceeEEEEecCCCcccHHHHHHhcCCCCCCCCEEEEeccccc---HHHHHHHHHHcCCceeeccCCCCH
Q 003881 430 RVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTT---VDEIESQLAQKGFKAAALHGDKDQ 506 (789)
Q Consensus 430 ~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~---a~~l~~~L~~~g~~v~~lhg~~~~ 506 (789)
.+.++.......++.+.+..... ..+ ..|++++... ..++||||+++.. |+.|+++|...|+++..+||+
T Consensus 294 ~f~v~~~~~~lr~i~~~yi~~~~-~~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~--- 366 (1638)
T PRK14701 294 GFEVGSGRSALRNIVDVYLNPEK-IIK-EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK--- 366 (1638)
T ss_pred EEEecCCCCCCCCcEEEEEECCH-HHH-HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch---
Confidence 77777666666778777765532 223 4666776654 3589999999876 589999999999999999995
Q ss_pred HHHHHHHHHhhcCCcceEEee----hhhhccCCCCC-ccEEEEEcCCC---CHHHHHHHH-------------hhcCCCC
Q 003881 507 ASRMEILQKFKSGVYHVLIAT----DVAARGLDIKS-IKSVVNFDIAR---DMDMHVHRI-------------GRTGRAG 565 (789)
Q Consensus 507 ~eR~~~l~~F~~G~~~VLVaT----~v~~rGlDI~~-v~~VI~~d~p~---s~~~yiQri-------------GR~gR~G 565 (789)
|..+++.|++|+++||||| ++++||||+|+ |++|||||+|. +++.|.|.. ||++|.|
T Consensus 367 --R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g 444 (1638)
T PRK14701 367 --NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEG 444 (1638)
T ss_pred --HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccC
Confidence 8999999999999999999 58999999999 99999999999 887776655 9999998
Q ss_pred CCCcEEEEEEccccHHHHH
Q 003881 566 DKDGTAYTLVTQKEARFAG 584 (789)
Q Consensus 566 ~k~G~~i~lv~~~d~~~~~ 584 (789)
....++..+...+..++.
T Consensus 445 -~~~~~~~~~~~~~~~~~~ 462 (1638)
T PRK14701 445 -IPIEGVLDVFPEDVEFLR 462 (1638)
T ss_pred -CcchhHHHhHHHHHHHHH
Confidence 456666444444443333
No 57
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.1e-36 Score=362.09 Aligned_cols=304 Identities=21% Similarity=0.275 Sum_probs=235.9
Q ss_pred HHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHh-hhcCCeEE
Q 003881 252 QCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA-KSHGIRVS 330 (789)
Q Consensus 252 Q~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~-~~~~i~v~ 330 (789)
-.+.+..+.+++++|++|+||||||++|.++++.+.. .++++||+.|||++|.|+++.+.+.. ...+..+.
T Consensus 7 ~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~--------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VG 78 (819)
T TIGR01970 7 LPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG--------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVG 78 (819)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc--------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEE
Confidence 3455667778899999999999999999999988752 24579999999999999999886443 33455666
Q ss_pred EEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccc-hhccCCChHHH-HHHHhhcCCCceEEE
Q 003881 331 AVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD-RMFDLGFEPQI-RSIVGQIRPDRQTLL 408 (789)
Q Consensus 331 ~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah-~m~~~~f~~~i-~~il~~l~~~~q~ll 408 (789)
+.+.+... .....+|+|+|+++|++++.. ...|..+++|||||+| ++++.++.-.+ ..+...++++.|+|+
T Consensus 79 y~vr~~~~------~s~~t~I~v~T~G~Llr~l~~-d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIl 151 (819)
T TIGR01970 79 YRVRGENK------VSRRTRLEVVTEGILTRMIQD-DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILA 151 (819)
T ss_pred EEEccccc------cCCCCcEEEECCcHHHHHHhh-CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEE
Confidence 65554332 234579999999999998876 4579999999999999 68887765443 455666788999999
Q ss_pred EeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccH-----HHHHHhcCCCCCCCCEEEEecccccH
Q 003881 409 FSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKL-----PWLLEKLPGMIDDGDVLVFASKKTTV 483 (789)
Q Consensus 409 ~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~-----~~L~~~L~~~~~~~kvLVF~~s~~~a 483 (789)
||||++... +..|+.++..+.+... ...+.+.+..... ..++ ..+...+.. ..+.+||||+++.++
T Consensus 152 mSATl~~~~---l~~~l~~~~vI~~~gr---~~pVe~~y~~~~~-~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~~eI 222 (819)
T TIGR01970 152 MSATLDGER---LSSLLPDAPVVESEGR---SFPVEIRYLPLRG-DQRLEDAVSRAVEHALAS--ETGSILVFLPGQAEI 222 (819)
T ss_pred EeCCCCHHH---HHHHcCCCcEEEecCc---ceeeeeEEeecch-hhhHHHHHHHHHHHHHHh--cCCcEEEEECCHHHH
Confidence 999998653 4567766555544322 2234454443322 2222 223333332 357899999999999
Q ss_pred HHHHHHHHH---cCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEcCCCC----------
Q 003881 484 DEIESQLAQ---KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARD---------- 550 (789)
Q Consensus 484 ~~l~~~L~~---~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s---------- 550 (789)
+.+++.|.+ .++.+..|||+|++.+|..+++.|++|..+|||||+++++||||++|++||+++.+..
T Consensus 223 ~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~ 302 (819)
T TIGR01970 223 RRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGIT 302 (819)
T ss_pred HHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCc
Confidence 999999987 4789999999999999999999999999999999999999999999999999998752
Q ss_pred --------HHHHHHHHhhcCCCCCCCcEEEEEEccccHH
Q 003881 551 --------MDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581 (789)
Q Consensus 551 --------~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~ 581 (789)
-..|+||.||+||.. .|.||.|+++.+..
T Consensus 303 ~L~~~~iSkasa~QR~GRAGR~~--~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 303 RLETVRISQASATQRAGRAGRLE--PGVCYRLWSEEQHQ 339 (819)
T ss_pred eeeEEEECHHHHHhhhhhcCCCC--CCEEEEeCCHHHHH
Confidence 345899999999984 79999999876543
No 58
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.6e-36 Score=339.49 Aligned_cols=332 Identities=22% Similarity=0.385 Sum_probs=265.8
Q ss_pred HHHHH-cCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHH
Q 003881 238 HAISK-QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYL 316 (789)
Q Consensus 238 ~~l~~-~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~ 316 (789)
..|+. .||..++|-|.++|..+++++|+|+..|||.||+++|.+|++.. .| .+|||.|..+|....++
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~----------~G-~TLVVSPLiSLM~DQV~ 75 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL----------EG-LTLVVSPLISLMKDQVD 75 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc----------CC-CEEEECchHHHHHHHHH
Confidence 33444 48999999999999999999999999999999999999999764 23 58999999999998888
Q ss_pred HHHHHhhhcCCeEEEEECCCChHHHHH---HHhcC-CcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCC--Ch
Q 003881 317 ETKKFAKSHGIRVSAVYGGMSKLDQFK---ELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG--FE 390 (789)
Q Consensus 317 ~~~~~~~~~~i~v~~~~gg~~~~~~~~---~l~~~-~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~--f~ 390 (789)
.++.. |+.+.++.+..+..+... .+..+ .+|+.-+|++|..---.+.+.-..+.++||||||.+.+|| |.
T Consensus 76 ~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFR 151 (590)
T COG0514 76 QLEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFR 151 (590)
T ss_pred HHHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccC
Confidence 88776 899999988877655433 33333 7999999999965433333345578899999999999997 88
Q ss_pred HHHHHHH---hhcCCCceEEEEeccCcHHHHHHHHHHhCCCe-EEeeccccCcccceeEEEEecCCCcccHHHHHHhcCC
Q 003881 391 PQIRSIV---GQIRPDRQTLLFSATMPRKVEKLAREILSDPV-RVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPG 466 (789)
Q Consensus 391 ~~i~~il---~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~-~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~ 466 (789)
+.+..+- ..++ +..++.+|||.++.+...+...+..-. .+.+. ....++|.-.+........+..++.+.+.
T Consensus 152 P~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~--sfdRpNi~~~v~~~~~~~~q~~fi~~~~~- 227 (590)
T COG0514 152 PDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRG--SFDRPNLALKVVEKGEPSDQLAFLATVLP- 227 (590)
T ss_pred HhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEe--cCCCchhhhhhhhcccHHHHHHHHHhhcc-
Confidence 8877654 3343 788999999999988877766655322 22222 22333443333333233444444444222
Q ss_pred CCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEc
Q 003881 467 MIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFD 546 (789)
Q Consensus 467 ~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d 546 (789)
...+..||||.|+..++.++.+|...|+.+..+|++|+..+|..+.+.|..++++|+|||.++++|||-|+|++|||||
T Consensus 228 -~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~ 306 (590)
T COG0514 228 -QLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYD 306 (590)
T ss_pred -ccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEec
Confidence 2345789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHHHH
Q 003881 547 IARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSL 590 (789)
Q Consensus 547 ~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~l 590 (789)
+|.+++.|.|-+||+||.| ....|++|+.+.|......+++..
T Consensus 307 lP~s~EsYyQE~GRAGRDG-~~a~aill~~~~D~~~~~~~i~~~ 349 (590)
T COG0514 307 LPGSIESYYQETGRAGRDG-LPAEAILLYSPEDIRWQRYLIEQS 349 (590)
T ss_pred CCCCHHHHHHHHhhccCCC-CcceEEEeeccccHHHHHHHHHhh
Confidence 9999999999999999999 789999999999988776665543
No 59
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.3e-36 Score=345.01 Aligned_cols=317 Identities=20% Similarity=0.248 Sum_probs=246.2
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003881 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~ 325 (789)
..|+|+|..+++.++.|+ |+.+.||+|||++|++|++.+.+ .++.++||+||++||.|.++++.+++..+
T Consensus 102 ~~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al--------~G~~v~VvTptreLA~qdae~~~~l~~~l 171 (656)
T PRK12898 102 QRHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL--------AGLPVHVITVNDYLAERDAELMRPLYEAL 171 (656)
T ss_pred CCCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh--------cCCeEEEEcCcHHHHHHHHHHHHHHHhhc
Confidence 479999999999999999 99999999999999999998863 36789999999999999999999999999
Q ss_pred CCeEEEEECCCChHHHHHHHhcCCcEEEeChHHH-HHHHhhcc-------------------------cccCceeEEEEe
Q 003881 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMKA-------------------------LTMSRVTYLVLD 379 (789)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L-~~~l~~~~-------------------------~~l~~i~~lVvD 379 (789)
++++.+++||.+. +.+.+..++||+++|...| .++|..+. .....+.++|||
T Consensus 172 Glsv~~i~gg~~~--~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvD 249 (656)
T PRK12898 172 GLTVGCVVEDQSP--DERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVD 249 (656)
T ss_pred CCEEEEEeCCCCH--HHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEee
Confidence 9999999999764 3455566899999999887 44543321 123568899999
Q ss_pred ccchhc-c--------------C--------------------CCh---------------HHHHHHHhh----------
Q 003881 380 EADRMF-D--------------L--------------------GFE---------------PQIRSIVGQ---------- 399 (789)
Q Consensus 380 Eah~m~-~--------------~--------------------~f~---------------~~i~~il~~---------- 399 (789)
|+|.|+ | . .|. ..+..++..
T Consensus 250 EvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~ 329 (656)
T PRK12898 250 EADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVR 329 (656)
T ss_pred cccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchH
Confidence 999652 1 0 000 000010000
Q ss_pred --------c------CC-------------------------------------------------------------Cc
Q 003881 400 --------I------RP-------------------------------------------------------------DR 404 (789)
Q Consensus 400 --------l------~~-------------------------------------------------------------~~ 404 (789)
+ .. -.
T Consensus 330 ~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~ 409 (656)
T PRK12898 330 REELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYL 409 (656)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhH
Confidence 0 00 03
Q ss_pred eEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHHHHHhcCCCC-CCCCEEEEecccccH
Q 003881 405 QTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTV 483 (789)
Q Consensus 405 q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a 483 (789)
++.+||||.+....++...|..+++.|...... .....+.+ ++.....|+..|...+.... ...++||||+++..+
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~--~r~~~~~~-v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~s 486 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS--QRRHLPDE-VFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAAS 486 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc--cceecCCE-EEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHH
Confidence 577899999888888888888887665543322 11122222 33345678888888886543 245899999999999
Q ss_pred HHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCC---Ccc-----EEEEEcCCCCHHHHH
Q 003881 484 DEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIK---SIK-----SVVNFDIARDMDMHV 555 (789)
Q Consensus 484 ~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~---~v~-----~VI~~d~p~s~~~yi 555 (789)
+.|+..|.+.++++..|||++. +|+..+..|+.+...|||||++++||+||+ +|. +||+|++|.+...|+
T Consensus 487 e~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~ 564 (656)
T PRK12898 487 ERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDR 564 (656)
T ss_pred HHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHH
Confidence 9999999999999999999865 455556666666678999999999999999 676 999999999999999
Q ss_pred HHHhhcCCCCCCCcEEEEEEccccH
Q 003881 556 HRIGRTGRAGDKDGTAYTLVTQKEA 580 (789)
Q Consensus 556 QriGR~gR~G~k~G~~i~lv~~~d~ 580 (789)
||+|||||.| ++|.+++|++.+|.
T Consensus 565 hr~GRTGRqG-~~G~s~~~is~eD~ 588 (656)
T PRK12898 565 QLAGRCGRQG-DPGSYEAILSLEDD 588 (656)
T ss_pred HhcccccCCC-CCeEEEEEechhHH
Confidence 9999999999 68999999998764
No 60
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.1e-36 Score=321.49 Aligned_cols=324 Identities=24% Similarity=0.281 Sum_probs=241.6
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhh
Q 003881 244 GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (789)
Q Consensus 244 g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~ 323 (789)
+..+++.||......++.+ |+|++.|||.|||+++++-+..++.+. .+ ++|+|+||+-|+.|+++.|.+++.
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~------~~-kvlfLAPTKPLV~Qh~~~~~~v~~ 83 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF------GG-KVLFLAPTKPLVLQHAEFCRKVTG 83 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc------CC-eEEEecCCchHHHHHHHHHHHHhC
Confidence 3457899999988888776 999999999999999888888887543 23 799999999999999999999987
Q ss_pred hcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcCCC
Q 003881 324 SHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD 403 (789)
Q Consensus 324 ~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~ 403 (789)
...-.++.++|.....+. ..++....|+|+||+.+.+-+..+.+++.++.+||||||||-...--...+...+-....+
T Consensus 84 ip~~~i~~ltGev~p~~R-~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~ 162 (542)
T COG1111 84 IPEDEIAALTGEVRPEER-EELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKN 162 (542)
T ss_pred CChhheeeecCCCChHHH-HHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccC
Confidence 655677788887766544 4556669999999999999999999999999999999999854432233344434444567
Q ss_pred ceEEEEeccCcHHH---HHHHHHHhCCCeEEee-----------------------------------------------
Q 003881 404 RQTLLFSATMPRKV---EKLAREILSDPVRVTV----------------------------------------------- 433 (789)
Q Consensus 404 ~q~ll~SAT~~~~i---~~l~~~~l~~p~~i~i----------------------------------------------- 433 (789)
+.+|++|||+-... ++++..+.-..+.+..
T Consensus 163 ~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~ 242 (542)
T COG1111 163 PLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKEL 242 (542)
T ss_pred ceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 78999999984332 2222111110000000
Q ss_pred -----cc----cc--Ccc-------cc-----------------------------ee---EE-----------------
Q 003881 434 -----GE----VG--MAN-------ED-----------------------------IT---QV----------------- 446 (789)
Q Consensus 434 -----~~----~~--~~~-------~~-----------------------------i~---q~----------------- 446 (789)
.. .. ... .. +. +.
T Consensus 243 g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~ 322 (542)
T COG1111 243 GVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAK 322 (542)
T ss_pred CceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHH
Confidence 00 00 000 00 00 00
Q ss_pred -----------------EEecCCCcccHHHHHHhcCCCC---CCCCEEEEecccccHHHHHHHHHHcCCcee-ecc----
Q 003881 447 -----------------VHVIPSDAEKLPWLLEKLPGMI---DDGDVLVFASKKTTVDEIESQLAQKGFKAA-ALH---- 501 (789)
Q Consensus 447 -----------------~~~~~~~~~k~~~L~~~L~~~~---~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~-~lh---- 501 (789)
.....-...|+..+.+++.+.+ .+.++|||++.+.+++.|.++|.+.+..+. .+-
T Consensus 323 ~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~ 402 (542)
T COG1111 323 SLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQAS 402 (542)
T ss_pred HHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccc
Confidence 0000012334455555554433 335899999999999999999999987774 332
Q ss_pred ----CCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEcc
Q 003881 502 ----GDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (789)
Q Consensus 502 ----g~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~ 577 (789)
.+|+|.++.++++.|++|+++|||||+++++|||||.++.||+|++-.|+..++||.|||||. +.|.+|+|++.
T Consensus 403 r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~--r~Grv~vLvt~ 480 (542)
T COG1111 403 REGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK--RKGRVVVLVTE 480 (542)
T ss_pred cccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC--CCCeEEEEEec
Confidence 379999999999999999999999999999999999999999999999999999999999996 58999999998
Q ss_pred c
Q 003881 578 K 578 (789)
Q Consensus 578 ~ 578 (789)
.
T Consensus 481 g 481 (542)
T COG1111 481 G 481 (542)
T ss_pred C
Confidence 7
No 61
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=3.7e-36 Score=333.24 Aligned_cols=301 Identities=20% Similarity=0.228 Sum_probs=213.4
Q ss_pred CEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChH----
Q 003881 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKL---- 339 (789)
Q Consensus 264 dvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~---- 339 (789)
++++++|||||||++|++|++..+.. ..+.++||++|+++|+.|+++.+..++. -.+..+++.....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~------~~~~~ii~v~P~~~L~~q~~~~l~~~f~---~~~~~~~~~~~~~~~~~ 71 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS------QKADRVIIALPTRATINAMYRRAKELFG---SNLGLLHSSSSFKRIKE 71 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh------CCCCeEEEEeehHHHHHHHHHHHHHHhC---cccEEeeccHHHHHHhc
Confidence 58999999999999999999987643 2356799999999999999999998754 2344445443210
Q ss_pred -------HH-HHHH------hcCCcEEEeChHHHHHHHhhcc----cccC--ceeEEEEeccchhccCCChHHHHHHHhh
Q 003881 340 -------DQ-FKEL------KAGCEIVIATPGRLIDMLKMKA----LTMS--RVTYLVLDEADRMFDLGFEPQIRSIVGQ 399 (789)
Q Consensus 340 -------~~-~~~l------~~~~dIiV~Tp~~L~~~l~~~~----~~l~--~i~~lVvDEah~m~~~~f~~~i~~il~~ 399 (789)
.. .... ....+|+|+||+.++..+.... ..+. ..++|||||||.+.++.+.. +..++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~ 150 (358)
T TIGR01587 72 MGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEV 150 (358)
T ss_pred cCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHH
Confidence 00 0011 1136899999999988765411 1111 23789999999998865443 5555555
Q ss_pred cC-CCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEe-cCCCcccHHHHHHhcCCCCCCCCEEEEe
Q 003881 400 IR-PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHV-IPSDAEKLPWLLEKLPGMIDDGDVLVFA 477 (789)
Q Consensus 400 l~-~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~-~~~~~~k~~~L~~~L~~~~~~~kvLVF~ 477 (789)
++ .+.|+++||||+|..+.+++..+...+.......... .....+.+.. ......+...+..++......+++||||
T Consensus 151 l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~ 229 (358)
T TIGR01587 151 LKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEE-RRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIV 229 (358)
T ss_pred HHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCccc-cccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEE
Confidence 54 5789999999999877777666544322111110000 0011122211 1122344445555544334567999999
Q ss_pred cccccHHHHHHHHHHcCC--ceeeccCCCCHHHHHHH----HHHhhcCCcceEEeehhhhccCCCCCccEEEEEcCCCCH
Q 003881 478 SKKTTVDEIESQLAQKGF--KAAALHGDKDQASRMEI----LQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDM 551 (789)
Q Consensus 478 ~s~~~a~~l~~~L~~~g~--~v~~lhg~~~~~eR~~~----l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~ 551 (789)
+++..++.++..|++.+. .+..+||++++.+|..+ ++.|++|+.+|||||+++++||||+ +++||++..| +
T Consensus 230 ~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~ 306 (358)
T TIGR01587 230 NTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--I 306 (358)
T ss_pred CCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--H
Confidence 999999999999988766 59999999999999764 8999999999999999999999995 8899998776 8
Q ss_pred HHHHHHHhhcCCCCCCCc---EEEEEEccc
Q 003881 552 DMHVHRIGRTGRAGDKDG---TAYTLVTQK 578 (789)
Q Consensus 552 ~~yiQriGR~gR~G~k~G---~~i~lv~~~ 578 (789)
..|+||+||+||.|.+.+ .+|+|....
T Consensus 307 ~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 307 DSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred HHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 899999999999984444 677666543
No 62
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.9e-36 Score=361.02 Aligned_cols=302 Identities=21% Similarity=0.285 Sum_probs=233.6
Q ss_pred HHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHh-hhcCCeEEE
Q 003881 253 CQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA-KSHGIRVSA 331 (789)
Q Consensus 253 ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~-~~~~i~v~~ 331 (789)
.+.+..+.+++++|++|+||||||++|.++++.... ...++||++|||++|.|+++.+.+.. ...+..+.+
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~--------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy 82 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG--------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGY 82 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC--------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEE
Confidence 455677778899999999999999999999886531 12479999999999999999886543 345667777
Q ss_pred EECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccch-hccCCCh-HHHHHHHhhcCCCceEEEE
Q 003881 332 VYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR-MFDLGFE-PQIRSIVGQIRPDRQTLLF 409 (789)
Q Consensus 332 ~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~-m~~~~f~-~~i~~il~~l~~~~q~ll~ 409 (789)
.+++.... .....|+|+||++|++++.. ...|..+++|||||+|+ .++.++. ..+..++..++++.|+|+|
T Consensus 83 ~vr~~~~~------~~~t~I~v~T~G~Llr~l~~-d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilm 155 (812)
T PRK11664 83 RMRAESKV------GPNTRLEVVTEGILTRMIQR-DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIM 155 (812)
T ss_pred EecCcccc------CCCCcEEEEChhHHHHHHhh-CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEE
Confidence 77765432 22468999999999998875 45799999999999995 5655443 2344566777889999999
Q ss_pred eccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHH-----HHHHhcCCCCCCCCEEEEecccccHH
Q 003881 410 SATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLP-----WLLEKLPGMIDDGDVLVFASKKTTVD 484 (789)
Q Consensus 410 SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~-----~L~~~L~~~~~~~kvLVF~~s~~~a~ 484 (789)
|||++.. .+..++.++..+.+... ...+.+.+..+.. ..++. .+...+.. ..+.+||||+++.+++
T Consensus 156 SATl~~~---~l~~~~~~~~~I~~~gr---~~pV~~~y~~~~~-~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~~ei~ 226 (812)
T PRK11664 156 SATLDND---RLQQLLPDAPVIVSEGR---SFPVERRYQPLPA-HQRFDEAVARATAELLRQ--ESGSLLLFLPGVGEIQ 226 (812)
T ss_pred ecCCCHH---HHHHhcCCCCEEEecCc---cccceEEeccCch-hhhHHHHHHHHHHHHHHh--CCCCEEEEcCCHHHHH
Confidence 9999865 23566766555544322 2235555444332 22322 23333332 3579999999999999
Q ss_pred HHHHHHHH---cCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEcCCCC-----------
Q 003881 485 EIESQLAQ---KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARD----------- 550 (789)
Q Consensus 485 ~l~~~L~~---~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s----------- 550 (789)
.+++.|.. .++.+..+||+|++.+|..++..|++|+.+|||||+++++||||++|++||+++.+..
T Consensus 227 ~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~ 306 (812)
T PRK11664 227 RVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTR 306 (812)
T ss_pred HHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcce
Confidence 99999987 5788999999999999999999999999999999999999999999999999776643
Q ss_pred -------HHHHHHHHhhcCCCCCCCcEEEEEEccccH
Q 003881 551 -------MDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (789)
Q Consensus 551 -------~~~yiQriGR~gR~G~k~G~~i~lv~~~d~ 580 (789)
-..|+||.||+||.+ .|.||.|+++.+.
T Consensus 307 L~~~~iSkasa~QR~GRaGR~~--~G~cyrL~t~~~~ 341 (812)
T PRK11664 307 LVTQRISQASMTQRAGRAGRLE--PGICLHLYSKEQA 341 (812)
T ss_pred eEEEeechhhhhhhccccCCCC--CcEEEEecCHHHH
Confidence 357999999999985 7999999987654
No 63
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=5.5e-36 Score=344.31 Aligned_cols=300 Identities=16% Similarity=0.167 Sum_probs=220.7
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhh
Q 003881 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (789)
Q Consensus 245 ~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~ 324 (789)
...|+++|.++++.++.+++++++++||+|||+++++. ...++.. ...++||||||++|+.||.+.++++...
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l-~~~~~~~------~~~~vLilvpt~eL~~Q~~~~l~~~~~~ 184 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLL-SRYYLEN------YEGKVLIIVPTTSLVTQMIDDFVDYRLF 184 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHH-HHHHHhc------CCCeEEEEECcHHHHHHHHHHHHHhccc
Confidence 35899999999999999999999999999999875442 2222221 2347999999999999999999998754
Q ss_pred cCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcCCCc
Q 003881 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR 404 (789)
Q Consensus 325 ~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~ 404 (789)
....+..+++|.... ...+|+|+||++|..... ..+..+++|||||||++... .+..++..+++.+
T Consensus 185 ~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~~~ 250 (501)
T PHA02558 185 PREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGK----SLTSIITKLDNCK 250 (501)
T ss_pred cccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccch----hHHHHHHhhhccc
Confidence 444555677776543 347999999999976442 24678999999999998753 4567777777778
Q ss_pred eEEEEeccCcHHHHHHH--HHHhCCCeEEeeccccC------cccceeE--------------------EEEecCCCccc
Q 003881 405 QTLLFSATMPRKVEKLA--REILSDPVRVTVGEVGM------ANEDITQ--------------------VVHVIPSDAEK 456 (789)
Q Consensus 405 q~ll~SAT~~~~i~~l~--~~~l~~p~~i~i~~~~~------~~~~i~q--------------------~~~~~~~~~~k 456 (789)
++++||||+........ ..+++ |+...+..... ....+.. .+..+.....+
T Consensus 251 ~~lGLTATp~~~~~~~~~~~~~fG-~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~R 329 (501)
T PHA02558 251 FKFGLTGSLRDGKANILQYVGLFG-DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKR 329 (501)
T ss_pred eEEEEeccCCCccccHHHHHHhhC-CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHH
Confidence 99999999875322111 11222 22211110000 0000000 00001111223
Q ss_pred HHHHHHhcCCCC-CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEee-hhhhccC
Q 003881 457 LPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT-DVAARGL 534 (789)
Q Consensus 457 ~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT-~v~~rGl 534 (789)
...+...+.... .+.++||||.+.++++.|++.|...++++..+||++++.+|..+++.|++|...||||| +++++|+
T Consensus 330 n~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~ 409 (501)
T PHA02558 330 NKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGI 409 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecccc
Confidence 333333332221 34689999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred CCCCccEEEEEcCCCCHHHHHHHHhhcCCCCC
Q 003881 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGD 566 (789)
Q Consensus 535 DI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~ 566 (789)
|+|++++||++.++.+...|+||+||++|.+.
T Consensus 410 Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~ 441 (501)
T PHA02558 410 SIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHG 441 (501)
T ss_pred ccccccEEEEecCCcchhhhhhhhhccccCCC
Confidence 99999999999999999999999999999983
No 64
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=3.4e-35 Score=361.04 Aligned_cols=293 Identities=25% Similarity=0.323 Sum_probs=229.3
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHH
Q 003881 235 QLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI 314 (789)
Q Consensus 235 ~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi 314 (789)
.+.+.+.+.....|+++|.++++.++.|+|++++||||+|||+ |++|++.++.. .++++|||+||++||.|+
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-------~g~~vLIL~PTreLa~Qi 137 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK-------KGKRCYIILPTTLLVIQV 137 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeCHHHHHHHH
Confidence 3445555555568999999999999999999999999999997 67777666532 268899999999999999
Q ss_pred HHHHHHHhhhcCCeEE---EEECCCChHHH---HHHHhc-CCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhcc-
Q 003881 315 YLETKKFAKSHGIRVS---AVYGGMSKLDQ---FKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD- 386 (789)
Q Consensus 315 ~~~~~~~~~~~~i~v~---~~~gg~~~~~~---~~~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~- 386 (789)
++.+++++...++.+. +++|+.+..++ +..+.. +++|||+||++|.+.+.. +.. .+++|||||||+|++
T Consensus 138 ~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~--l~~-~~~~iVvDEaD~~L~~ 214 (1171)
T TIGR01054 138 AEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE--LGP-KFDFIFVDDVDALLKA 214 (1171)
T ss_pred HHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH--hcC-CCCEEEEeChHhhhhc
Confidence 9999999987776644 46788776654 334444 499999999999987754 222 899999999999998
Q ss_pred ----------CCChHH-HHHHH----------------------hhcCCCce--EEEEecc-CcHHHHHHHHHHhCCCeE
Q 003881 387 ----------LGFEPQ-IRSIV----------------------GQIRPDRQ--TLLFSAT-MPRKVEKLAREILSDPVR 430 (789)
Q Consensus 387 ----------~~f~~~-i~~il----------------------~~l~~~~q--~ll~SAT-~~~~i~~l~~~~l~~p~~ 430 (789)
+||..+ +..++ ..++..+| +++|||| +|..+. ..++.++..
T Consensus 215 ~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~---~~l~r~ll~ 291 (1171)
T TIGR01054 215 SKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKR---AKLFRELLG 291 (1171)
T ss_pred cccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccH---HHHcccccc
Confidence 688764 44443 23445555 5678999 565533 234556666
Q ss_pred EeeccccCcccceeEEEEecCCCcccHHHHHHhcCCCCCCCCEEEEeccc---ccHHHHHHHHHHcCCceeeccCCCCHH
Q 003881 431 VTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKK---TTVDEIESQLAQKGFKAAALHGDKDQA 507 (789)
Q Consensus 431 i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~---~~a~~l~~~L~~~g~~v~~lhg~~~~~ 507 (789)
+.++.......+|.+.+..... +...|.+++... ..++||||+++ +.|+.|+..|...|+++..+||++++
T Consensus 292 ~~v~~~~~~~r~I~~~~~~~~~---~~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~- 365 (1171)
T TIGR01054 292 FEVGGGSDTLRNVVDVYVEDED---LKETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK- 365 (1171)
T ss_pred eEecCccccccceEEEEEeccc---HHHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH-
Confidence 7776666666777777654422 244566666543 35899999999 99999999999999999999999973
Q ss_pred HHHHHHHHhhcCCcceEEee----hhhhccCCCCC-ccEEEEEcCCCC
Q 003881 508 SRMEILQKFKSGVYHVLIAT----DVAARGLDIKS-IKSVVNFDIARD 550 (789)
Q Consensus 508 eR~~~l~~F~~G~~~VLVaT----~v~~rGlDI~~-v~~VI~~d~p~s 550 (789)
.+++.|++|+++||||| ++++||||||+ |++|||||+|..
T Consensus 366 ---~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 366 ---EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred ---HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCE
Confidence 68999999999999994 99999999999 899999999974
No 65
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=3.8e-34 Score=320.52 Aligned_cols=361 Identities=24% Similarity=0.332 Sum_probs=293.4
Q ss_pred CHHHHHHH-HHcCCCCCcHHHHHHHHHHHcC------CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEc
Q 003881 233 STQLMHAI-SKQGYEKPTSIQCQALPIILSG------RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305 (789)
Q Consensus 233 ~~~l~~~l-~~~g~~~ptpiQ~~~i~~il~g------rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~ 305 (789)
...+++.+ ....| +||..|++++..|... .+-|++++.|||||++++++++..+ .+|.++.+++
T Consensus 248 ~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai--------~~G~Q~ALMA 318 (677)
T COG1200 248 NGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAI--------EAGYQAALMA 318 (677)
T ss_pred cHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHH--------HcCCeeEEec
Confidence 33444444 44555 7999999999999854 4679999999999999999999987 5688899999
Q ss_pred CcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHH---HHHHHhcC-CcEEEeChHHHHHHHhhcccccCceeEEEEecc
Q 003881 306 PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD---QFKELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEA 381 (789)
Q Consensus 306 PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~---~~~~l~~~-~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEa 381 (789)
||--||.|+++.+.+|+..+++++..++|...... ....+..| .+|||+|..-+.+ ...++++.++|+||-
T Consensus 319 PTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd-----~V~F~~LgLVIiDEQ 393 (677)
T COG1200 319 PTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD-----KVEFHNLGLVIIDEQ 393 (677)
T ss_pred cHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhc-----ceeecceeEEEEecc
Confidence 99999999999999999999999999999876543 34455565 8999999765544 557889999999999
Q ss_pred chhccCCChHHHHHHHhhcCC-CceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHHH
Q 003881 382 DRMFDLGFEPQIRSIVGQIRP-DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWL 460 (789)
Q Consensus 382 h~m~~~~f~~~i~~il~~l~~-~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L 460 (789)
|| |+...+..|..-.. .++.|+||||+-|. .|+-..+.+.....+...+.....|...+... .+...+
T Consensus 394 HR-----FGV~QR~~L~~KG~~~Ph~LvMTATPIPR--TLAlt~fgDldvS~IdElP~GRkpI~T~~i~~----~~~~~v 462 (677)
T COG1200 394 HR-----FGVHQRLALREKGEQNPHVLVMTATPIPR--TLALTAFGDLDVSIIDELPPGRKPITTVVIPH----ERRPEV 462 (677)
T ss_pred cc-----ccHHHHHHHHHhCCCCCcEEEEeCCCchH--HHHHHHhccccchhhccCCCCCCceEEEEecc----ccHHHH
Confidence 99 88888888887777 68999999996443 36778888887777777777777787766544 333444
Q ss_pred HHhcCC-CCCCCCEEEEecccccH--------HHHHHHHHHc--CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehh
Q 003881 461 LEKLPG-MIDDGDVLVFASKKTTV--------DEIESQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDV 529 (789)
Q Consensus 461 ~~~L~~-~~~~~kvLVF~~s~~~a--------~~l~~~L~~~--g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v 529 (789)
++.+.+ +..+.++.|.|+-.++. ..+++.|+.. ++++..+||.|+..+++.++..|++|+++|||||.|
T Consensus 463 ~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTV 542 (677)
T COG1200 463 YERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTV 542 (677)
T ss_pred HHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeE
Confidence 444433 33456899999987654 4556666643 567999999999999999999999999999999999
Q ss_pred hhccCCCCCccEEEEEcCCCCHHHHHHHH-hhcCCCCCCCcEEEEEEccccHHHHHHHHHHHHHcCCCccHHHHHHHHhc
Q 003881 530 AARGLDIKSIKSVVNFDIARDMDMHVHRI-GRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMKD 608 (789)
Q Consensus 530 ~~rGlDI~~v~~VI~~d~p~s~~~yiQri-GR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~l~~~~q~vp~~l~~~a~~~ 608 (789)
++.|+|+|+++++|+++.-..-..-+|++ ||+||.+ ....|+.++.+......++.++.|..+.+.+-..-.|+.+
T Consensus 543 IEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~-~qSyC~Ll~~~~~~~~a~~RL~im~~t~DGF~IAE~DLkl-- 619 (677)
T COG1200 543 IEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGD-LQSYCVLLYKPPLSEVAKQRLKIMRETTDGFVIAEEDLKL-- 619 (677)
T ss_pred EEecccCCCCeEEEEechhhhhHHHHHHhccccCCCC-cceEEEEEeCCCCChhHHHHHHHHHhcCCcceehhhhHhc--
Confidence 99999999999999999888766667766 9999977 7899999999887788889999999999999888888877
Q ss_pred CcccccccccCCCCCCCCCCCC
Q 003881 609 GRFRSKRDARKGGGKKGKGRGG 630 (789)
Q Consensus 609 ~~~~~~~~~r~~g~~~g~g~gg 630 (789)
|+.|...|..+.|
T Consensus 620 ---------RGpGe~lG~rQSG 632 (677)
T COG1200 620 ---------RGPGELLGTRQSG 632 (677)
T ss_pred ---------cCCccccCCcccC
Confidence 6666666655544
No 66
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=2.6e-35 Score=317.81 Aligned_cols=339 Identities=20% Similarity=0.280 Sum_probs=277.3
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEE
Q 003881 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPI-ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (789)
Q Consensus 226 sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~-il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl 304 (789)
...++.+|+.+.+.|+..|++.++|+|.-++.. ++.|+|.+++.+|+||||++.-++-+..++. .+.+.|++
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~-------~g~KmlfL 267 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS-------GGKKMLFL 267 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh-------CCCeEEEE
Confidence 345678999999999999999999999999987 7799999999999999999988888887755 36778999
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHH----HHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEec
Q 003881 305 APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF----KELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDE 380 (789)
Q Consensus 305 ~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~----~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDE 380 (789)
+|..+||+|-+++|+.....+++++..-+|-......- ......+||||+||+.+-.++... ..+.++..|||||
T Consensus 268 vPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDE 346 (830)
T COG1202 268 VPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDE 346 (830)
T ss_pred ehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeee
Confidence 99999999999999998888999988777754332211 111235899999999998888776 5799999999999
Q ss_pred cchhccCCChHHHHHHHh---hcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccH
Q 003881 381 ADRMFDLGFEPQIRSIVG---QIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKL 457 (789)
Q Consensus 381 ah~m~~~~f~~~i~~il~---~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~ 457 (789)
+|.+-+....+.+..++. .+-+..|+|.+|||+-+. ++++..+--.++...- .+.++..++.++.....|+
T Consensus 347 iHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~~-----RPVplErHlvf~~~e~eK~ 420 (830)
T COG1202 347 IHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYDE-----RPVPLERHLVFARNESEKW 420 (830)
T ss_pred eeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeecC-----CCCChhHeeeeecCchHHH
Confidence 999888665655555544 445789999999998765 6688887766665543 2334555666666677887
Q ss_pred HHHHHhcCC-------CCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhh
Q 003881 458 PWLLEKLPG-------MIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530 (789)
Q Consensus 458 ~~L~~~L~~-------~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~ 530 (789)
..+..+.+. .-..|++|||++++..|..|+.+|...|+++..+|++|+..+|..+...|.++++.++|+|-++
T Consensus 421 ~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL 500 (830)
T COG1202 421 DIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAAL 500 (830)
T ss_pred HHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhh
Confidence 776655432 2245799999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCccEEE----EEcCCCCHHHHHHHHhhcCCCC-CCCcEEEEEEccc
Q 003881 531 ARGLDIKSIKSVV----NFDIARDMDMHVHRIGRTGRAG-DKDGTAYTLVTQK 578 (789)
Q Consensus 531 ~rGlDI~~v~~VI----~~d~p~s~~~yiQriGR~gR~G-~k~G~~i~lv~~~ 578 (789)
+.|+|+|.-.+|+ +-.-|-++.+|.|++||+||.+ +..|++|.++.+.
T Consensus 501 ~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 501 AAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred hcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 9999999644333 2234569999999999999999 6679999998653
No 67
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=7.6e-34 Score=344.63 Aligned_cols=324 Identities=25% Similarity=0.318 Sum_probs=244.4
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhh
Q 003881 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (789)
Q Consensus 245 ~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~ 324 (789)
..+|++||.+++..++.+ |+|+++|||+|||++++++++.++. ..+.++|||+||++|+.||.+.+++++..
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~-------~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 84 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH-------KKGGKVLILAPTKPLVEQHAEFFRKFLNI 84 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH-------hCCCeEEEEeCcHHHHHHHHHHHHHHhCC
Confidence 357899999999988887 9999999999999999998887762 23567999999999999999999998754
Q ss_pred cCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcCCCc
Q 003881 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR 404 (789)
Q Consensus 325 ~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~ 404 (789)
...++..++|+..... ...+...++|+|+||+.+...+....+.+..+++|||||||++........+...+....+..
T Consensus 85 ~~~~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~ 163 (773)
T PRK13766 85 PEEKIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNP 163 (773)
T ss_pred CCceEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCC
Confidence 4457777888766543 455666799999999999888877777889999999999999876543444444444445567
Q ss_pred eEEEEeccCcHH---HHHHHHHHhCCCeEEe--------------------e---------------------------c
Q 003881 405 QTLLFSATMPRK---VEKLAREILSDPVRVT--------------------V---------------------------G 434 (789)
Q Consensus 405 q~ll~SAT~~~~---i~~l~~~~l~~p~~i~--------------------i---------------------------~ 434 (789)
++++||||+... +..++..+....+.+. + +
T Consensus 164 ~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~ 243 (773)
T PRK13766 164 LVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELG 243 (773)
T ss_pred EEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 899999997322 2222222211100000 0 0
Q ss_pred cccCcc------------cceeEE--------------------------------------------------------
Q 003881 435 EVGMAN------------EDITQV-------------------------------------------------------- 446 (789)
Q Consensus 435 ~~~~~~------------~~i~q~-------------------------------------------------------- 446 (789)
...... ..+.+.
T Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~ 323 (773)
T PRK13766 244 VIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKAS 323 (773)
T ss_pred CcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHH
Confidence 000000 000000
Q ss_pred ---------------EEecCCCcccHHHHHHhcCCC---CCCCCEEEEecccccHHHHHHHHHHcCCceeeccCC-----
Q 003881 447 ---------------VHVIPSDAEKLPWLLEKLPGM---IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGD----- 503 (789)
Q Consensus 447 ---------------~~~~~~~~~k~~~L~~~L~~~---~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----- 503 (789)
+..+.....|+..|.++|.+. ....++||||+++..|+.|.++|...++.+..+||.
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~ 403 (773)
T PRK13766 324 KRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDG 403 (773)
T ss_pred HHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccc
Confidence 000011234555555555443 245799999999999999999999999999999986
Q ss_pred ---CCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEcccc
Q 003881 504 ---KDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE 579 (789)
Q Consensus 504 ---~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d 579 (789)
|++.+|..++..|++|+++|||||+++++|+|+|.+++||+||+|+++..|+||+||+||.| .|.+|+|++...
T Consensus 404 ~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~--~~~v~~l~~~~t 480 (773)
T PRK13766 404 DKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE--EGRVVVLIAKGT 480 (773)
T ss_pred cCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC--CCEEEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999987 488999987653
No 68
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.8e-34 Score=337.24 Aligned_cols=319 Identities=19% Similarity=0.260 Sum_probs=236.4
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhh
Q 003881 244 GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (789)
Q Consensus 244 g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~ 323 (789)
|. .|+++|..+++.+++|+ |+.+.||+|||++|++|++...+ .|+.++||+||++||.|.++++..++.
T Consensus 76 g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al--------~G~~v~VvTpt~~LA~qd~e~~~~l~~ 144 (790)
T PRK09200 76 GM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL--------EGKGVHLITVNDYLAKRDAEEMGQVYE 144 (790)
T ss_pred CC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH--------cCCCeEEEeCCHHHHHHHHHHHHHHHh
Confidence 44 79999999999998886 99999999999999999986654 367799999999999999999999999
Q ss_pred hcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHH-HHHHhhc------ccccCceeEEEEeccchhcc-C--------
Q 003881 324 SHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMK------ALTMSRVTYLVLDEADRMFD-L-------- 387 (789)
Q Consensus 324 ~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L-~~~l~~~------~~~l~~i~~lVvDEah~m~~-~-------- 387 (789)
.+++++.+++|+.+...+.+. ..+++|+++||++| .+++... ...+..+.++||||||.|+- .
T Consensus 145 ~lGl~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliis 223 (790)
T PRK09200 145 FLGLTVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIIS 223 (790)
T ss_pred hcCCeEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeee
Confidence 999999999999884444333 34699999999999 5555432 23568899999999998731 0
Q ss_pred -------CChHHHHHHHhhcCCC---------------------------------------------------------
Q 003881 388 -------GFEPQIRSIVGQIRPD--------------------------------------------------------- 403 (789)
Q Consensus 388 -------~f~~~i~~il~~l~~~--------------------------------------------------------- 403 (789)
.+...+..++..+...
T Consensus 224 g~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~ 303 (790)
T PRK09200 224 GKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDV 303 (790)
T ss_pred CCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCC
Confidence 0111111111111100
Q ss_pred ------------------------------------------------------------ceEEEEeccCcHHHHHHHHH
Q 003881 404 ------------------------------------------------------------RQTLLFSATMPRKVEKLARE 423 (789)
Q Consensus 404 ------------------------------------------------------------~q~ll~SAT~~~~i~~l~~~ 423 (789)
..+.+||.|....-.++ ..
T Consensus 304 dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~-~~ 382 (790)
T PRK09200 304 DYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEF-FE 382 (790)
T ss_pred cEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHH-HH
Confidence 13444455543222222 22
Q ss_pred HhCCCeEEeeccccCcccceeEEEEecCCCcccHHHHHHhcCCC-CCCCCEEEEecccccHHHHHHHHHHcCCceeeccC
Q 003881 424 ILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGM-IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHG 502 (789)
Q Consensus 424 ~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~-~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg 502 (789)
.++-.+.......+....+... .+......|+..|+..+... ....++||||+++..++.|+..|.+.++++..|||
T Consensus 383 ~Y~l~v~~IPt~kp~~r~d~~~--~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~ 460 (790)
T PRK09200 383 VYNMEVVQIPTNRPIIRIDYPD--KVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNA 460 (790)
T ss_pred HhCCcEEECCCCCCcccccCCC--eEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecC
Confidence 2222222111111111111111 12224456888888877653 24569999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCcceEEeehhhhccCCC---CCcc-----EEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEE
Q 003881 503 DKDQASRMEILQKFKSGVYHVLIATDVAARGLDI---KSIK-----SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTL 574 (789)
Q Consensus 503 ~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI---~~v~-----~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~l 574 (789)
++.+.++..+...++.| .|||||++++||+|| ++|. +||+|++|.+...|+||+||+||.| ++|.+++|
T Consensus 461 ~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G-~~G~s~~~ 537 (790)
T PRK09200 461 KNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQG-DPGSSQFF 537 (790)
T ss_pred CccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCC-CCeeEEEE
Confidence 99998888888877766 799999999999999 6898 9999999999999999999999999 68999999
Q ss_pred EccccH
Q 003881 575 VTQKEA 580 (789)
Q Consensus 575 v~~~d~ 580 (789)
++..|.
T Consensus 538 is~eD~ 543 (790)
T PRK09200 538 ISLEDD 543 (790)
T ss_pred EcchHH
Confidence 998765
No 69
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=2e-34 Score=339.54 Aligned_cols=336 Identities=24% Similarity=0.298 Sum_probs=258.6
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHH-HcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHH
Q 003881 231 GFSTQLMHAISKQGYEKPTSIQCQALPII-LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRE 309 (789)
Q Consensus 231 ~l~~~l~~~l~~~g~~~ptpiQ~~~i~~i-l~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~Ptre 309 (789)
.+++.+.+.++..++..+.|.|+.++... +.++|+|+|+|||||||+.+++.+++.+.+. +.++|+|||+++
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-------~~k~vYivPlkA 87 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-------GGKVVYIVPLKA 87 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-------CCcEEEEeChHH
Confidence 36778888888888878888888777664 5669999999999999999999999998653 567999999999
Q ss_pred HHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCC
Q 003881 310 LAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGF 389 (789)
Q Consensus 310 La~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f 389 (789)
||.|.+++++ ....+|++|...+|+..... +...+++|||+||+.+-.++++....+..+++|||||+|.+.+...
T Consensus 88 La~Ek~~~~~-~~~~~GirV~~~TgD~~~~~---~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~R 163 (766)
T COG1204 88 LAEEKYEEFS-RLEELGIRVGISTGDYDLDD---ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTR 163 (766)
T ss_pred HHHHHHHHhh-hHHhcCCEEEEecCCcccch---hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCccc
Confidence 9999999999 44567999999999887544 2234699999999999999988777788999999999999998877
Q ss_pred hHHHHHHHhhcC---CCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccc-ceeEEEEecCCCc-----cc-HHH
Q 003881 390 EPQIRSIVGQIR---PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANE-DITQVVHVIPSDA-----EK-LPW 459 (789)
Q Consensus 390 ~~~i~~il~~l~---~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~-~i~q~~~~~~~~~-----~k-~~~ 459 (789)
.+.+..|+.+++ ...|++.+|||+|+ ..+++.|+-.+++............ ...+.+....... .+ ...
T Consensus 164 G~~lE~iv~r~~~~~~~~rivgLSATlpN-~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~ 242 (766)
T COG1204 164 GPVLESIVARMRRLNELIRIVGLSATLPN-AEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLA 242 (766)
T ss_pred CceehhHHHHHHhhCcceEEEEEeeecCC-HHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHH
Confidence 777777776654 34799999999985 4778888877766322222222211 1222232222111 11 122
Q ss_pred HHHhcCCCCCCCCEEEEecccccHHHHHHHHHHc-------------------------------------CCceeeccC
Q 003881 460 LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK-------------------------------------GFKAAALHG 502 (789)
Q Consensus 460 L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~-------------------------------------g~~v~~lhg 502 (789)
+...+......+++||||+++..+...++.|... ...++.+|.
T Consensus 243 ~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhA 322 (766)
T COG1204 243 LELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHA 322 (766)
T ss_pred HHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCcccccc
Confidence 2222223335679999999999999999998841 123788999
Q ss_pred CCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEE----EEc-----CCCCHHHHHHHHhhcCCCC-CCCcEEE
Q 003881 503 DKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVV----NFD-----IARDMDMHVHRIGRTGRAG-DKDGTAY 572 (789)
Q Consensus 503 ~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI----~~d-----~p~s~~~yiQriGR~gR~G-~k~G~~i 572 (789)
+++..+|..+.+.|+.|.++|||||..+++|+|+|.-++|| .|+ .+-++.+|+|++||+||.| ...|.++
T Consensus 323 GL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~ 402 (766)
T COG1204 323 GLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAI 402 (766)
T ss_pred CCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEE
Confidence 99999999999999999999999999999999999766665 466 4557899999999999999 4457777
Q ss_pred EEEccc
Q 003881 573 TLVTQK 578 (789)
Q Consensus 573 ~lv~~~ 578 (789)
++.+..
T Consensus 403 i~~~~~ 408 (766)
T COG1204 403 ILATSH 408 (766)
T ss_pred EEecCc
Confidence 777443
No 70
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=7.8e-34 Score=328.88 Aligned_cols=320 Identities=20% Similarity=0.187 Sum_probs=228.8
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003881 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (789)
Q Consensus 247 ~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~ 326 (789)
.++|+|.|++..+..++..|+.++||+|||++|++|++.+++. ++.++||+|+++||.|+.+++..++..+|
T Consensus 68 glrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~--------g~~V~VVTpn~yLA~Rdae~m~~l~~~LG 139 (762)
T TIGR03714 68 GMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT--------GKGAMLVTTNDYLAKRDAEEMGPVYEWLG 139 (762)
T ss_pred CCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc--------CCceEEeCCCHHHHHHHHHHHHHHHhhcC
Confidence 3456666666666555568999999999999999998877643 45699999999999999999999999999
Q ss_pred CeEEEEECCCC---hHHHHHHHhcCCcEEEeChHHH-HHHHhh------cccccCceeEEEEeccchhccC-C-------
Q 003881 327 IRVSAVYGGMS---KLDQFKELKAGCEIVIATPGRL-IDMLKM------KALTMSRVTYLVLDEADRMFDL-G------- 388 (789)
Q Consensus 327 i~v~~~~gg~~---~~~~~~~l~~~~dIiV~Tp~~L-~~~l~~------~~~~l~~i~~lVvDEah~m~~~-~------- 388 (789)
+.+.+++++.. .....+....+++|+++||++| .+++.. ....+..+.++||||||.|+-. .
T Consensus 140 Lsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliis 219 (762)
T TIGR03714 140 LTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVIS 219 (762)
T ss_pred CcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeee
Confidence 99998887632 2222334445799999999999 565532 2345778999999999987320 0
Q ss_pred --------ChHHHHHHHhhcCCC---------------------------------------------------------
Q 003881 389 --------FEPQIRSIVGQIRPD--------------------------------------------------------- 403 (789)
Q Consensus 389 --------f~~~i~~il~~l~~~--------------------------------------------------------- 403 (789)
+...+..+...+...
T Consensus 220 g~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~ 299 (762)
T TIGR03714 220 GAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNK 299 (762)
T ss_pred CCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCC
Confidence 011111111111110
Q ss_pred ------------------------------------------------------------ceEEEEeccCcHHHHHHHHH
Q 003881 404 ------------------------------------------------------------RQTLLFSATMPRKVEKLARE 423 (789)
Q Consensus 404 ------------------------------------------------------------~q~ll~SAT~~~~i~~l~~~ 423 (789)
.++.+||.|......++..
T Consensus 300 dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~- 378 (762)
T TIGR03714 300 DYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIE- 378 (762)
T ss_pred ceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHH-
Confidence 2344555554333333332
Q ss_pred HhCCCeEEeeccccCcccceeEEEEecCCCcccHHHHHHhcCCC-CCCCCEEEEecccccHHHHHHHHHHcCCceeeccC
Q 003881 424 ILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGM-IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHG 502 (789)
Q Consensus 424 ~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~-~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg 502 (789)
+++-.+.......+....+.. -.++.....|+..+++.+.+. ....++||||+++..++.|+..|.+.++++..|||
T Consensus 379 iY~l~v~~IPt~kp~~r~d~~--d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a 456 (762)
T TIGR03714 379 TYSLSVVKIPTNKPIIRIDYP--DKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNA 456 (762)
T ss_pred HhCCCEEEcCCCCCeeeeeCC--CeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecC
Confidence 222222111111111111111 122234556888888877653 34568999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCC---------CccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEE
Q 003881 503 DKDQASRMEILQKFKSGVYHVLIATDVAARGLDIK---------SIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYT 573 (789)
Q Consensus 503 ~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~---------~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~ 573 (789)
++.+.++..+...|+.| .|||||++++||+||+ ++.+|++|++|....+ +||+||+||.| ++|.+++
T Consensus 457 ~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG-~~G~s~~ 532 (762)
T TIGR03714 457 QNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQG-DPGSSQF 532 (762)
T ss_pred CChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCC-CceeEEE
Confidence 99999988887777777 6999999999999999 9999999999998777 99999999999 7899999
Q ss_pred EEccccHH
Q 003881 574 LVTQKEAR 581 (789)
Q Consensus 574 lv~~~d~~ 581 (789)
|++..|.-
T Consensus 533 ~is~eD~l 540 (762)
T TIGR03714 533 FVSLEDDL 540 (762)
T ss_pred EEccchhh
Confidence 99987653
No 71
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=1.4e-33 Score=324.81 Aligned_cols=318 Identities=20% Similarity=0.235 Sum_probs=236.1
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003881 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~ 325 (789)
..|+++|..+.+.++.|+ |+.++||+|||++|++|++...+. +..++||+||++||.|.++++.+++..+
T Consensus 55 ~~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~VvTpt~~LA~qdae~~~~l~~~L 124 (745)
T TIGR00963 55 MRPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAEWMGQVYRFL 124 (745)
T ss_pred CCccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh--------CCCEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 468899999988888776 999999999999999999644432 4459999999999999999999999999
Q ss_pred CCeEEEEECCCChHHHHHHHhcCCcEEEeChHHH-HHHHhhc------ccccCceeEEEEeccchhcc-CC---------
Q 003881 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMK------ALTMSRVTYLVLDEADRMFD-LG--------- 388 (789)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L-~~~l~~~------~~~l~~i~~lVvDEah~m~~-~~--------- 388 (789)
++++.+++|+.+...+... -.++|+++||++| .+++..+ ...+..+.++||||+|+|+- ..
T Consensus 125 GLsv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~ 202 (745)
T TIGR00963 125 GLSVGLILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGP 202 (745)
T ss_pred CCeEEEEeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCC
Confidence 9999999999886544333 3589999999999 8888765 34678899999999998742 00
Q ss_pred ------ChHHHHHHHhhcCC--------C---------------------------------------------------
Q 003881 389 ------FEPQIRSIVGQIRP--------D--------------------------------------------------- 403 (789)
Q Consensus 389 ------f~~~i~~il~~l~~--------~--------------------------------------------------- 403 (789)
.......+...+.. .
T Consensus 203 ~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dY 282 (745)
T TIGR00963 203 AEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDY 282 (745)
T ss_pred CCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcE
Confidence 00000011111100 0
Q ss_pred ----------------------------------------------------------ceEEEEeccCcHHHHHHHHHHh
Q 003881 404 ----------------------------------------------------------RQTLLFSATMPRKVEKLAREIL 425 (789)
Q Consensus 404 ----------------------------------------------------------~q~ll~SAT~~~~i~~l~~~~l 425 (789)
.++.+||.|......++.. ++
T Consensus 283 iV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~-iY 361 (745)
T TIGR00963 283 IVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEK-IY 361 (745)
T ss_pred EEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHH-Hh
Confidence 1334455554333222222 22
Q ss_pred CCCeEEeeccccCcccceeEEEEecCCCcccHHHHHHhcCCCC-CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCC
Q 003881 426 SDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDK 504 (789)
Q Consensus 426 ~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~ 504 (789)
+-++.+.....+....+ ..-.+......|+..+++.+.+.. .+.++||||+++..++.|+..|.+.++++..||+.
T Consensus 362 ~l~vv~IPtnkp~~R~d--~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~- 438 (745)
T TIGR00963 362 NLEVVVVPTNRPVIRKD--LSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK- 438 (745)
T ss_pred CCCEEEeCCCCCeeeee--CCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC-
Confidence 22222211111111111 111222334567777777664432 45599999999999999999999999999999998
Q ss_pred CHHHHHHHHHHhhcCCcceEEeehhhhccCCCCC-------ccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEcc
Q 003881 505 DQASRMEILQKFKSGVYHVLIATDVAARGLDIKS-------IKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (789)
Q Consensus 505 ~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~-------v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~ 577 (789)
+.+|+..+..|+.+...|+|||++++||+||+. ..+||+++.|.+...|.|++||+||.| .+|.+.+|++.
T Consensus 439 -q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG-~~G~s~~~ls~ 516 (745)
T TIGR00963 439 -NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQG-DPGSSRFFLSL 516 (745)
T ss_pred -hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCC-CCcceEEEEec
Confidence 889999999999999999999999999999998 559999999999999999999999999 68999999998
Q ss_pred ccHH
Q 003881 578 KEAR 581 (789)
Q Consensus 578 ~d~~ 581 (789)
.|.-
T Consensus 517 eD~l 520 (745)
T TIGR00963 517 EDNL 520 (745)
T ss_pred cHHH
Confidence 8753
No 72
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=7.9e-33 Score=314.31 Aligned_cols=321 Identities=26% Similarity=0.301 Sum_probs=231.8
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003881 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~ 325 (789)
..++.||.+.+..+| ++|+|+++|||+|||.+++..|++|+-..+ ..++|+++||+-|+.|....+..++..
T Consensus 61 ~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p------~~KiVF~aP~~pLv~QQ~a~~~~~~~~- 132 (746)
T KOG0354|consen 61 LELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP------KGKVVFLAPTRPLVNQQIACFSIYLIP- 132 (746)
T ss_pred ccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC------cceEEEeeCCchHHHHHHHHHhhccCc-
Confidence 578999999999999 999999999999999999999999985543 367999999999999998777777653
Q ss_pred CCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccc-cCceeEEEEeccchhccCC-ChHHHHHHHhhcCCC
Q 003881 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALT-MSRVTYLVLDEADRMFDLG-FEPQIRSIVGQIRPD 403 (789)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~-l~~i~~lVvDEah~m~~~~-f~~~i~~il~~l~~~ 403 (789)
..+....||.........+....+|+|+||+.|.+.|...... |+.|.+|||||||+-.... |...++.++..-...
T Consensus 133 -~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~ 211 (746)
T KOG0354|consen 133 -YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQG 211 (746)
T ss_pred -ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhcc
Confidence 5667777775555555577778999999999999988775433 6999999999999865444 444444555544444
Q ss_pred ceEEEEeccCcHHHHHHHHHHhCCCeEEeeccc-----------------------------------------------
Q 003881 404 RQTLLFSATMPRKVEKLAREILSDPVRVTVGEV----------------------------------------------- 436 (789)
Q Consensus 404 ~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~----------------------------------------------- 436 (789)
.|+|++|||+-...+....-+..-...+.+...
T Consensus 212 ~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l 291 (746)
T KOG0354|consen 212 NQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGL 291 (746)
T ss_pred ccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCc
Confidence 599999999965443332211110000000000
Q ss_pred ------c------------Ccccce--eEE--------------------EEec--------------------------
Q 003881 437 ------G------------MANEDI--TQV--------------------VHVI-------------------------- 450 (789)
Q Consensus 437 ------~------------~~~~~i--~q~--------------------~~~~-------------------------- 450 (789)
. ....+. .+. +..+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~ 371 (746)
T KOG0354|consen 292 IEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEAR 371 (746)
T ss_pred cccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcch
Confidence 0 000000 000 0000
Q ss_pred -------------------CCCcccHHHHHHhcCC---CCCCCCEEEEecccccHHHHHHHHHHc---CCceeeccC---
Q 003881 451 -------------------PSDAEKLPWLLEKLPG---MIDDGDVLVFASKKTTVDEIESQLAQK---GFKAAALHG--- 502 (789)
Q Consensus 451 -------------------~~~~~k~~~L~~~L~~---~~~~~kvLVF~~s~~~a~~l~~~L~~~---g~~v~~lhg--- 502 (789)
+....|+..|.+.|.. .....++||||.++..|+.|..+|... +++...+-|
T Consensus 372 ~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~ 451 (746)
T KOG0354|consen 372 LIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGK 451 (746)
T ss_pred hhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccc
Confidence 0012233333333322 122348999999999999999999832 334333333
Q ss_pred -----CCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEcc
Q 003881 503 -----DKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (789)
Q Consensus 503 -----~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~ 577 (789)
+|+|.+..++++.|++|+++|||||+++++||||+.|++||-||.-.|+...+||.|| ||+ +.|.++.+++.
T Consensus 452 s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa--~ns~~vll~t~ 528 (746)
T KOG0354|consen 452 STQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA--RNSKCVLLTTG 528 (746)
T ss_pred cccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc--cCCeEEEEEcc
Confidence 8999999999999999999999999999999999999999999999999999999999 998 47999999984
Q ss_pred c
Q 003881 578 K 578 (789)
Q Consensus 578 ~ 578 (789)
.
T Consensus 529 ~ 529 (746)
T KOG0354|consen 529 S 529 (746)
T ss_pred h
Confidence 3
No 73
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=4e-32 Score=299.35 Aligned_cols=290 Identities=18% Similarity=0.189 Sum_probs=204.8
Q ss_pred HHHHHHHHHHcCCC--EEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhc---
Q 003881 251 IQCQALPIILSGRD--IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH--- 325 (789)
Q Consensus 251 iQ~~~i~~il~grd--vll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~--- 325 (789)
+|.++++.+.++.+ +++++|||+|||.+|++|++.. ..++|+++|+++|+.|+++.+++++...
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~-----------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~ 69 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG-----------ENDTIALYPTNALIEDQTEAIKEFVDVFKPE 69 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-----------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCC
Confidence 59999999999875 7889999999999999998842 2347999999999999999999987543
Q ss_pred -CCeEEEEECCCChHH-HH-----------------H-H-HhcCCcEEEeChHHHHHHHhhcc--------cccCceeEE
Q 003881 326 -GIRVSAVYGGMSKLD-QF-----------------K-E-LKAGCEIVIATPGRLIDMLKMKA--------LTMSRVTYL 376 (789)
Q Consensus 326 -~i~v~~~~gg~~~~~-~~-----------------~-~-l~~~~dIiV~Tp~~L~~~l~~~~--------~~l~~i~~l 376 (789)
++.+..+.|...... .. + . ....++|+++||+.|..++.... ..+..+++|
T Consensus 70 ~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~i 149 (357)
T TIGR03158 70 RDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTV 149 (357)
T ss_pred CCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEE
Confidence 455555555422110 00 0 0 12358899999999977664311 125789999
Q ss_pred EEeccchhccCC-----ChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHH--hCCCeEEeeccccC---------c-
Q 003881 377 VLDEADRMFDLG-----FEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREI--LSDPVRVTVGEVGM---------A- 439 (789)
Q Consensus 377 VvDEah~m~~~~-----f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~--l~~p~~i~i~~~~~---------~- 439 (789)
||||+|.+..+. +......++.......+++++|||+++.+...+... ++.+..+..+..-. .
T Consensus 150 V~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~ 229 (357)
T TIGR03158 150 IFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADN 229 (357)
T ss_pred EEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccc
Confidence 999999876433 122333444444445799999999999877777765 45554333332000 0
Q ss_pred --------ccceeEEEEecCCCcccHHHH---HHhcCCC---CCCCCEEEEecccccHHHHHHHHHHcC--CceeeccCC
Q 003881 440 --------NEDITQVVHVIPSDAEKLPWL---LEKLPGM---IDDGDVLVFASKKTTVDEIESQLAQKG--FKAAALHGD 503 (789)
Q Consensus 440 --------~~~i~q~~~~~~~~~~k~~~L---~~~L~~~---~~~~kvLVF~~s~~~a~~l~~~L~~~g--~~v~~lhg~ 503 (789)
...+.+.+.. ....+...+ .+.+.+. ...+++||||+++..++.++..|++.+ +.+..+||.
T Consensus 230 ~~~~~~~~~~~i~~~~~~--~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~ 307 (357)
T TIGR03158 230 KTQSFRPVLPPVELELIP--APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGF 307 (357)
T ss_pred cccccceeccceEEEEEe--CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecC
Confidence 0134443333 222333333 2322211 245689999999999999999999864 578899999
Q ss_pred CCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcC
Q 003881 504 KDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTG 562 (789)
Q Consensus 504 ~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~g 562 (789)
+++.+|.++. +..|||||++++|||||+.+ +|| ++ |.++..|+||+||+|
T Consensus 308 ~~~~~R~~~~------~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 308 APKKDRERAM------QFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CCHHHHHHhc------cCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 9999987653 78999999999999999987 666 55 889999999999997
No 74
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1e-31 Score=325.14 Aligned_cols=301 Identities=21% Similarity=0.313 Sum_probs=211.7
Q ss_pred HHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcC----cHHHHHHHHHHHHHHhhhcCC
Q 003881 252 QCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP----TRELAHQIYLETKKFAKSHGI 327 (789)
Q Consensus 252 Q~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~P----treLa~Qi~~~~~~~~~~~~i 327 (789)
-.+.+..+..++.+|++|+||||||++ +|.+...... .....+++..| +++||.|+.+++..-. +-
T Consensus 79 r~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~g~-----g~~g~I~~TQPRRlAArsLA~RVA~El~~~l---G~ 148 (1294)
T PRK11131 79 KQDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLELGR-----GVKGLIGHTQPRRLAARTVANRIAEELETEL---GG 148 (1294)
T ss_pred HHHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHcCC-----CCCCceeeCCCcHHHHHHHHHHHHHHHhhhh---cc
Confidence 445566677777888999999999985 7755443221 11123444456 4677777777776422 22
Q ss_pred eEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccc-hhccCCChHH-HHHHHhhcCCCce
Q 003881 328 RVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD-RMFDLGFEPQ-IRSIVGQIRPDRQ 405 (789)
Q Consensus 328 ~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah-~m~~~~f~~~-i~~il~~l~~~~q 405 (789)
.+.+-+.. ..+ ...+++|+|+||++|++.+.... .|..+++||||||| ++++.+|... +..++. .+++.|
T Consensus 149 ~VGY~vrf---~~~---~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~-~rpdlK 220 (1294)
T PRK11131 149 CVGYKVRF---NDQ---VSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFILGYLKELLP-RRPDLK 220 (1294)
T ss_pred eeceeecC---ccc---cCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchHHHHHHHhhh-cCCCce
Confidence 22211111 111 13468999999999999987654 49999999999999 6899888754 333333 246789
Q ss_pred EEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCC-----cccHHHHHHhcCC--CCCCCCEEEEec
Q 003881 406 TLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSD-----AEKLPWLLEKLPG--MIDDGDVLVFAS 478 (789)
Q Consensus 406 ~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~-----~~k~~~L~~~L~~--~~~~~kvLVF~~ 478 (789)
+|+||||++. +.+++.|...|+ +.+... ...+.+.+...... .+.+..++..+.. ....+.+||||+
T Consensus 221 vILmSATid~--e~fs~~F~~apv-I~V~Gr---~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLp 294 (1294)
T PRK11131 221 VIITSATIDP--ERFSRHFNNAPI-IEVSGR---TYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMS 294 (1294)
T ss_pred EEEeeCCCCH--HHHHHHcCCCCE-EEEcCc---cccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcC
Confidence 9999999974 456666655564 444322 22344444433221 1122333322211 124578999999
Q ss_pred ccccHHHHHHHHHHcCCc---eeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEc---------
Q 003881 479 KKTTVDEIESQLAQKGFK---AAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFD--------- 546 (789)
Q Consensus 479 s~~~a~~l~~~L~~~g~~---v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d--------- 546 (789)
++.+++.+++.|...++. +..|||++++.+|..+++. .|..+|||||+++++|||||+|++||+++
T Consensus 295 g~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~ 372 (1294)
T PRK11131 295 GEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSY 372 (1294)
T ss_pred CHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcccccccc
Confidence 999999999999987764 6789999999999999886 57889999999999999999999999985
Q ss_pred ------CC---CCHHHHHHHHhhcCCCCCCCcEEEEEEccccH
Q 003881 547 ------IA---RDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (789)
Q Consensus 547 ------~p---~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~ 580 (789)
+| -+...|.||+|||||.+ .|.||.|++..+.
T Consensus 373 ~~~~~~Lp~~~iSkasa~QRaGRAGR~~--~G~c~rLyte~d~ 413 (1294)
T PRK11131 373 RTKVQRLPIEPISQASANQRKGRCGRVS--EGICIRLYSEDDF 413 (1294)
T ss_pred ccCcccCCeeecCHhhHhhhccccCCCC--CcEEEEeCCHHHH
Confidence 33 35578999999999995 7999999997654
No 75
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=8.6e-32 Score=311.99 Aligned_cols=321 Identities=17% Similarity=0.205 Sum_probs=220.7
Q ss_pred CCCcHHHHHHHHHHHc-C--CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHh
Q 003881 246 EKPTSIQCQALPIILS-G--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~-g--rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~ 322 (789)
..|+|||.+++..++. + +..++++|||+|||++.+.. +..+ +..+|||||+.+|+.||.+++.+|+
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~a-a~~l----------~k~tLILvps~~Lv~QW~~ef~~~~ 322 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTA-ACTV----------KKSCLVLCTSAVSVEQWKQQFKMWS 322 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHH-HHHh----------CCCEEEEeCcHHHHHHHHHHHHHhc
Confidence 4799999999999883 3 47899999999999986644 3443 2348999999999999999999997
Q ss_pred hhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhh--------cccccCceeEEEEeccchhccCCChHHHH
Q 003881 323 KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM--------KALTMSRVTYLVLDEADRMFDLGFEPQIR 394 (789)
Q Consensus 323 ~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~--------~~~~l~~i~~lVvDEah~m~~~~f~~~i~ 394 (789)
......+..++|+.... ......|+|+|+..+.....+ ..+.-..|.+||+||||++.. ....
T Consensus 323 ~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr 393 (732)
T TIGR00603 323 TIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMFR 393 (732)
T ss_pred CCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHHH
Confidence 54445566666653221 122378999999987543221 112234689999999999753 4455
Q ss_pred HHHhhcCCCceEEEEeccCcHHHH--HHHHHHhCCCeEEeeccccCc----ccceeEEEEecC-----------------
Q 003881 395 SIVGQIRPDRQTLLFSATMPRKVE--KLAREILSDPVRVTVGEVGMA----NEDITQVVHVIP----------------- 451 (789)
Q Consensus 395 ~il~~l~~~~q~ll~SAT~~~~i~--~l~~~~l~~p~~i~i~~~~~~----~~~i~q~~~~~~----------------- 451 (789)
.++..+. ....|+||||+.+.-. ..+..+++ |........... ...+...-..++
T Consensus 394 ~il~~l~-a~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k 471 (732)
T TIGR00603 394 RVLTIVQ-AHCKLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKR 471 (732)
T ss_pred HHHHhcC-cCcEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhh
Confidence 5666654 3457999999864321 11222222 332222110000 011111111111
Q ss_pred -----CCcccHHHHHHhcCCC-CCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcC-CcceE
Q 003881 452 -----SDAEKLPWLLEKLPGM-IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSG-VYHVL 524 (789)
Q Consensus 452 -----~~~~k~~~L~~~L~~~-~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G-~~~VL 524 (789)
....|+..+..++... ....++||||.+...+..++..|. +..|||.+++.+|..+++.|+.| .+++|
T Consensus 472 ~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vL 546 (732)
T TIGR00603 472 MLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTI 546 (732)
T ss_pred hHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEE
Confidence 1223444433333322 145699999999999988888772 56799999999999999999875 88999
Q ss_pred EeehhhhccCCCCCccEEEEEcCCC-CHHHHHHHHhhcCCCCCCCc-------EEEEEEccc--cHHHHHHHHHHHHHcC
Q 003881 525 IATDVAARGLDIKSIKSVVNFDIAR-DMDMHVHRIGRTGRAGDKDG-------TAYTLVTQK--EARFAGELVNSLIAAG 594 (789)
Q Consensus 525 VaT~v~~rGlDI~~v~~VI~~d~p~-s~~~yiQriGR~gR~G~k~G-------~~i~lv~~~--d~~~~~~lv~~l~~~~ 594 (789)
|+|+++.+|||+|++++||+++.|. +...|+||+||++|.+ ..+ ..|+|++.. +..+..+.-+.|...|
T Consensus 547 v~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~-~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~~qG 625 (732)
T TIGR00603 547 FLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAK-KGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLVDQG 625 (732)
T ss_pred EEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCC-CCCccccccceEEEEecCCchHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999984 9999999999999998 333 348899876 4555666666775544
No 76
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.98 E-value=1e-30 Score=312.88 Aligned_cols=318 Identities=19% Similarity=0.209 Sum_probs=209.2
Q ss_pred CCCcHHHHHHHHHHHcC--CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhh
Q 003881 246 EKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~g--rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~ 323 (789)
..|.|+|..++..++.. ..+|+++++|.|||+.+.+.+-..++. +...++|||||+ .|+.||..++.+++
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~------g~~~rvLIVvP~-sL~~QW~~El~~kF- 222 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT------GRAERVLILVPE-TLQHQWLVEMLRRF- 222 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc------CCCCcEEEEcCH-HHHHHHHHHHHHHh-
Confidence 46999999999887654 479999999999999876554433322 223459999998 89999999997654
Q ss_pred hcCCeEEEEECCCChHHHHH---HHhcCCcEEEeChHHHHHHHh-hcccccCceeEEEEeccchhccCC-ChHHHHHHHh
Q 003881 324 SHGIRVSAVYGGMSKLDQFK---ELKAGCEIVIATPGRLIDMLK-MKALTMSRVTYLVLDEADRMFDLG-FEPQIRSIVG 398 (789)
Q Consensus 324 ~~~i~v~~~~gg~~~~~~~~---~l~~~~dIiV~Tp~~L~~~l~-~~~~~l~~i~~lVvDEah~m~~~~-f~~~i~~il~ 398 (789)
++...++.++. ...... ......+++|||++.|...-. ...+.-..|++|||||||++.... -.......+.
T Consensus 223 --~l~~~i~~~~~-~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~ 299 (956)
T PRK04914 223 --NLRFSLFDEER-YAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVE 299 (956)
T ss_pred --CCCeEEEcCcc-hhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHH
Confidence 45544443322 111000 111246899999988764211 112223478999999999987321 1111122232
Q ss_pred hc-CCCceEEEEeccCcH-HHHHH-------------------------------HHHHhC-CC----------------
Q 003881 399 QI-RPDRQTLLFSATMPR-KVEKL-------------------------------AREILS-DP---------------- 428 (789)
Q Consensus 399 ~l-~~~~q~ll~SAT~~~-~i~~l-------------------------------~~~~l~-~p---------------- 428 (789)
.+ .....+|++|||+-. ..+++ +..++. ++
T Consensus 300 ~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~ 379 (956)
T PRK04914 300 QLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQ 379 (956)
T ss_pred HHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhccc
Confidence 22 234578999999832 11110 000000 00
Q ss_pred e---------------------------------EEeecccc----CcccceeEEEEe-c--------------------
Q 003881 429 V---------------------------------RVTVGEVG----MANEDITQVVHV-I-------------------- 450 (789)
Q Consensus 429 ~---------------------------------~i~i~~~~----~~~~~i~q~~~~-~-------------------- 450 (789)
. .+...... .......+.+.. +
T Consensus 380 ~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l 459 (956)
T PRK04914 380 DIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDML 459 (956)
T ss_pred chhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhc
Confidence 0 00000000 000000011000 0
Q ss_pred ---------------CCCcccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHH-HcCCceeeccCCCCHHHHHHHHH
Q 003881 451 ---------------PSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLA-QKGFKAAALHGDKDQASRMEILQ 514 (789)
Q Consensus 451 ---------------~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~-~~g~~v~~lhg~~~~~eR~~~l~ 514 (789)
.....|..+|.++|... ...++||||+++..++.|++.|. ..|+.+..+||+|++.+|.++++
T Consensus 460 ~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~-~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~ 538 (956)
T PRK04914 460 YPEQIYQEFEDNATWWNFDPRVEWLIDFLKSH-RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAA 538 (956)
T ss_pred CHHHHHHHHhhhhhccccCHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHH
Confidence 01123566777777654 35699999999999999999994 66999999999999999999999
Q ss_pred HhhcC--CcceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEc
Q 003881 515 KFKSG--VYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVT 576 (789)
Q Consensus 515 ~F~~G--~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~ 576 (789)
.|+++ .++|||||+++++|+|++.+++|||||+|||+..|+||+||++|.|++ +.+.+++.
T Consensus 539 ~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~-~~V~i~~~ 601 (956)
T PRK04914 539 YFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQK-HDIQIHVP 601 (956)
T ss_pred HHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCC-ceEEEEEc
Confidence 99984 599999999999999999999999999999999999999999999954 55544443
No 77
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.98 E-value=9.5e-31 Score=299.34 Aligned_cols=331 Identities=22% Similarity=0.275 Sum_probs=251.8
Q ss_pred cCCCCCcHHHHHHHHHHHc-CCCEEEEccCCChhhHHHHHHHHHHHhcC--ccccccCCCeEEEEcCcHHHHHHHHHHHH
Q 003881 243 QGYEKPTSIQCQALPIILS-GRDIIGIAKTGSGKTAAFVLPMIVHIMDQ--PELQKEEGPIGVICAPTRELAHQIYLETK 319 (789)
Q Consensus 243 ~g~~~ptpiQ~~~i~~il~-grdvll~a~TGsGKTla~llpil~~l~~~--~~~~~~~gp~vLIl~PtreLa~Qi~~~~~ 319 (789)
.+|..+..+|..++|.++. ..|+|||||||+|||..|+|.+|+.+.++ .-....+.-++++|+|+++||..+++.+.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 3567889999999999985 47999999999999999999999988652 12233467889999999999999999999
Q ss_pred HHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcc----cccCceeEEEEeccchhccCCChHHHHH
Q 003881 320 KFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKA----LTMSRVTYLVLDEADRMFDLGFEPQIRS 395 (789)
Q Consensus 320 ~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~----~~l~~i~~lVvDEah~m~~~~f~~~i~~ 395 (789)
+-+..+|+.|..++|........ ...++|||+||+.+- .+.++. ..++.+.+|||||+|.+-+. .++.++.
T Consensus 186 kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwD-vvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGpvlEt 260 (1230)
T KOG0952|consen 186 KKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWD-VVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGPVLET 260 (1230)
T ss_pred hhcccccceEEEecCcchhhHHH---HHhcCEEEeccccee-eeeeeeccchhhhhheeeEEeeeehhhcCc-ccchHHH
Confidence 98888899999999987654432 234999999999973 333321 23567899999999976654 6777777
Q ss_pred HHhhc-------CCCceEEEEeccCcHHHHHHHHHHhCCC-eEEeeccccCcccceeEEEEecCCCc----------ccH
Q 003881 396 IVGQI-------RPDRQTLLFSATMPRKVEKLAREILSDP-VRVTVGEVGMANEDITQVVHVIPSDA----------EKL 457 (789)
Q Consensus 396 il~~l-------~~~~q~ll~SAT~~~~i~~l~~~~l~~p-~~i~i~~~~~~~~~i~q~~~~~~~~~----------~k~ 457 (789)
|+.++ ....++|++|||+|+ +++++.++-.+| .-+........+..+.+.+.-+.... ...
T Consensus 261 iVaRtlr~vessqs~IRivgLSATlPN-~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~ 339 (1230)
T KOG0952|consen 261 IVARTLRLVESSQSMIRIVGLSATLPN-YEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCY 339 (1230)
T ss_pred HHHHHHHHHHhhhhheEEEEeeccCCC-HHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHH
Confidence 76655 356799999999985 578888877663 22333333344455666665554331 112
Q ss_pred HHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHc-----------------------CCceeeccCCCCHHHHHHHHH
Q 003881 458 PWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK-----------------------GFKAAALHGDKDQASRMEILQ 514 (789)
Q Consensus 458 ~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~-----------------------g~~v~~lhg~~~~~eR~~~l~ 514 (789)
..+.+.+. .+.+|||||.++....+.++.|.+. ...+.++|.+|...+|..+.+
T Consensus 340 ~kv~e~~~---~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~ 416 (1230)
T KOG0952|consen 340 DKVVEFLQ---EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEK 416 (1230)
T ss_pred HHHHHHHH---cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHH
Confidence 22333333 4569999999999999999988763 134778999999999999999
Q ss_pred HhhcCCcceEEeehhhhccCCCCCccEEE----EEcCCC------CHHHHHHHHhhcCCCC-CCCcEEEEEEccccHHH
Q 003881 515 KFKSGVYHVLIATDVAARGLDIKSIKSVV----NFDIAR------DMDMHVHRIGRTGRAG-DKDGTAYTLVTQKEARF 582 (789)
Q Consensus 515 ~F~~G~~~VLVaT~v~~rGlDI~~v~~VI----~~d~p~------s~~~yiQriGR~gR~G-~k~G~~i~lv~~~d~~~ 582 (789)
.|+.|.++||+||..+++|+|+|.-.++| .||... .+.+.+|..||+||.. ...|.++++.+.+-...
T Consensus 417 ~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~ 495 (1230)
T KOG0952|consen 417 EFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDH 495 (1230)
T ss_pred HHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHH
Confidence 99999999999999999999999755555 355443 5778899999999998 56788888877654433
No 78
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.97 E-value=3.7e-30 Score=307.53 Aligned_cols=334 Identities=23% Similarity=0.336 Sum_probs=255.0
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHH
Q 003881 233 STQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAH 312 (789)
Q Consensus 233 ~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~ 312 (789)
...+..++.+.|...|+++|.+|+..+.+|+|+|++.+||||||.+|++|++.+++..+. .++|+|.||++||+
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~------a~AL~lYPtnALa~ 129 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPS------ARALLLYPTNALAN 129 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcC------ccEEEEechhhhHh
Confidence 344577888888999999999999999999999999999999999999999999988753 26899999999999
Q ss_pred HHHHHHHHHhhhcC--CeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhc----ccccCceeEEEEeccchhcc
Q 003881 313 QIYLETKKFAKSHG--IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK----ALTMSRVTYLVLDEADRMFD 386 (789)
Q Consensus 313 Qi~~~~~~~~~~~~--i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~----~~~l~~i~~lVvDEah~m~~ 386 (789)
...+.++++....+ +++..+.|.....+...-+...++||++||.+|..++.+. ...+..+++|||||+|.+-.
T Consensus 130 DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrG 209 (851)
T COG1205 130 DQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRG 209 (851)
T ss_pred hHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccc
Confidence 99999999998877 6777777776665554556778999999999998855443 23467799999999996432
Q ss_pred CCChHHHHHHH-------hhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecC------C-
Q 003881 387 LGFEPQIRSIV-------GQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIP------S- 452 (789)
Q Consensus 387 ~~f~~~i~~il-------~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~------~- 452 (789)
. |...+-.++ ...+...|+|..|||+.+. .+.+..+........+.......... ..+...+ .
T Consensus 210 v-~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~g~~~~~~-~~~~~~p~~~~~~~~ 286 (851)
T COG1205 210 V-QGSEVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVDEDGSPRGLR-YFVRREPPIRELAES 286 (851)
T ss_pred c-chhHHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeeccCCCCCCCce-EEEEeCCcchhhhhh
Confidence 2 344333333 3334578999999998755 45677777766555443333332222 2222222 0
Q ss_pred -CcccHHHHHHhcCCCC-CCCCEEEEecccccHHHHH----HHHHHcC----CceeeccCCCCHHHHHHHHHHhhcCCcc
Q 003881 453 -DAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIE----SQLAQKG----FKAAALHGDKDQASRMEILQKFKSGVYH 522 (789)
Q Consensus 453 -~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~----~~L~~~g----~~v~~lhg~~~~~eR~~~l~~F~~G~~~ 522 (789)
...+...+..++.... .+-++|+|+.++..++.+. ..+...+ ..+..+++++...+|.++...|+.|+..
T Consensus 287 ~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~ 366 (851)
T COG1205 287 IRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELL 366 (851)
T ss_pred cccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCcc
Confidence 0122222222222222 3449999999999999997 4555555 6789999999999999999999999999
Q ss_pred eEEeehhhhccCCCCCccEEEEEcCCC-CHHHHHHHHhhcCCCCCCCcEEEEEEc
Q 003881 523 VLIATDVAARGLDIKSIKSVVNFDIAR-DMDMHVHRIGRTGRAGDKDGTAYTLVT 576 (789)
Q Consensus 523 VLVaT~v~~rGlDI~~v~~VI~~d~p~-s~~~yiQriGR~gR~G~k~G~~i~lv~ 576 (789)
++++|.+++-|+||-+++.||++..|. +...++||.||+||.+ +.+..+.+..
T Consensus 367 ~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~-~~~l~~~v~~ 420 (851)
T COG1205 367 GVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRG-QESLVLVVLR 420 (851)
T ss_pred EEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCC-CCceEEEEeC
Confidence 999999999999999999999999999 8999999999999998 4455554444
No 79
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.97 E-value=4e-30 Score=269.15 Aligned_cols=334 Identities=21% Similarity=0.312 Sum_probs=246.5
Q ss_pred HHHHHHHHc-CCCCC-cHHHHHHHHHHHcC-CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHH
Q 003881 235 QLMHAISKQ-GYEKP-TSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (789)
Q Consensus 235 ~l~~~l~~~-g~~~p-tpiQ~~~i~~il~g-rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa 311 (789)
.+.++|++. |+.++ ++.|.+++..+..+ +||.+++|||+||+++|.||.|.+ +.+.||+.|..+|.
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----------~gITIV~SPLiALI 74 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----------GGITIVISPLIALI 74 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----------CCeEEEehHHHHHH
Confidence 355666664 55543 79999999998866 799999999999999999999986 34789999999999
Q ss_pred HHHHHHHHHHhhhcCCeEEEEECCCChHHH---HHHH---hcCCcEEEeChHHHH-----HHHhhcccccCceeEEEEec
Q 003881 312 HQIYLETKKFAKSHGIRVSAVYGGMSKLDQ---FKEL---KAGCEIVIATPGRLI-----DMLKMKALTMSRVTYLVLDE 380 (789)
Q Consensus 312 ~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~---~~~l---~~~~dIiV~Tp~~L~-----~~l~~~~~~l~~i~~lVvDE 380 (789)
....+.+.++ .+.+..+....+..+. +..| +....|+..||+.-. .+|+ ...+-.-+.|+||||
T Consensus 75 kDQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn-~L~~r~~L~Y~vVDE 149 (641)
T KOG0352|consen 75 KDQIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLN-GLANRDVLRYIVVDE 149 (641)
T ss_pred HHHHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHH-HHhhhceeeeEEech
Confidence 8887777776 4555555554443332 2223 335789999998753 2221 222344578999999
Q ss_pred cchhccCC--ChHHHHHH--HhhcCCCceEEEEeccCcHHHHHHHHH--HhCCCeEEeeccccCcccceeEEEEecCCCc
Q 003881 381 ADRMFDLG--FEPQIRSI--VGQIRPDRQTLLFSATMPRKVEKLARE--ILSDPVRVTVGEVGMANEDITQVVHVIPSDA 454 (789)
Q Consensus 381 ah~m~~~~--f~~~i~~i--l~~l~~~~q~ll~SAT~~~~i~~l~~~--~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~ 454 (789)
||....|| |.+.+..+ |+..-++...+.++||..+.+++-+-. .+.+|+.+.- .+.-..++..-+++-..-.
T Consensus 150 AHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFk--TP~FR~NLFYD~~~K~~I~ 227 (641)
T KOG0352|consen 150 AHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFK--TPTFRDNLFYDNHMKSFIT 227 (641)
T ss_pred hhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhcc--CcchhhhhhHHHHHHHHhh
Confidence 99999997 66665543 333345778999999999988776544 3456665443 2222222211111100111
Q ss_pred ccHHHHHHhcCCCC------------CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcc
Q 003881 455 EKLPWLLEKLPGMI------------DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYH 522 (789)
Q Consensus 455 ~k~~~L~~~L~~~~------------~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~ 522 (789)
+-+..|.+.-...+ ..|--||||.|++.|++++-.|...|+....+|.++...+|..+-+.|+++++.
T Consensus 228 D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~P 307 (641)
T KOG0352|consen 228 DCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIP 307 (641)
T ss_pred hHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCC
Confidence 11222222211111 123469999999999999999999999999999999999999999999999999
Q ss_pred eEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHH
Q 003881 523 VLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELV 587 (789)
Q Consensus 523 VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv 587 (789)
|++||...++|+|-|+|+.||++++|.|+.-|.|-.||+||.| +...|-++++.+|...+.-|+
T Consensus 308 vI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDG-k~SyCRLYYsR~D~~~i~FLi 371 (641)
T KOG0352|consen 308 VIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDG-KRSYCRLYYSRQDKNALNFLV 371 (641)
T ss_pred EEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCC-CccceeeeecccchHHHHHHH
Confidence 9999999999999999999999999999999999999999999 789999999999887665544
No 80
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=3.8e-29 Score=294.44 Aligned_cols=402 Identities=20% Similarity=0.240 Sum_probs=296.6
Q ss_pred hhhcCCCHHHHHHHHHHcCceecc--CCC-----CCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC----
Q 003881 194 ASISGMSEQDVMEYKKSLAIRVSG--FDV-----PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG---- 262 (789)
Q Consensus 194 ~~i~~~s~~~~~~~r~~~~i~v~~--~~~-----P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~g---- 262 (789)
+.+.+|....|...|.+..-.+.. ..+ -+....=-.+..+..+...+...---.-||-|..||..+...
T Consensus 534 p~L~kLG~~~W~k~K~K~~~~v~diA~eLi~lyA~R~~~~G~af~~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~ 613 (1139)
T COG1197 534 PKLHKLGGGAWKKAKAKARKKVRDIAAELIKLYAKRQAKKGFAFPPDTEWQEEFEASFPYEETPDQLKAIEEVKRDMESG 613 (1139)
T ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhccC
Confidence 457778888898888665322110 000 000111112345566667666553336799999999998743
Q ss_pred --CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHH
Q 003881 263 --RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (789)
Q Consensus 263 --rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~ 340 (789)
.|-|+|+..|-|||-+++-+++..+ .+|++|.|||||.-||+|+++.+++.+..+++++..+.--.+..+
T Consensus 614 kpMDRLiCGDVGFGKTEVAmRAAFkAV--------~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE 685 (1139)
T COG1197 614 KPMDRLICGDVGFGKTEVAMRAAFKAV--------MDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKE 685 (1139)
T ss_pred CcchheeecCcCCcHHHHHHHHHHHHh--------cCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHH
Confidence 5899999999999999999998887 457889999999999999999999999999999988877666555
Q ss_pred HH---HHHhcC-CcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHH
Q 003881 341 QF---KELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRK 416 (789)
Q Consensus 341 ~~---~~l~~~-~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~ 416 (789)
+. +.++.| .||||+|+.-| .+.+.+.++.+|||||-|+ |+..-...+..++.+..+|-||||+-|.
T Consensus 686 ~~~il~~la~G~vDIvIGTHrLL-----~kdv~FkdLGLlIIDEEqR-----FGVk~KEkLK~Lr~~VDvLTLSATPIPR 755 (1139)
T COG1197 686 QKEILKGLAEGKVDIVIGTHRLL-----SKDVKFKDLGLLIIDEEQR-----FGVKHKEKLKELRANVDVLTLSATPIPR 755 (1139)
T ss_pred HHHHHHHHhcCCccEEEechHhh-----CCCcEEecCCeEEEechhh-----cCccHHHHHHHHhccCcEEEeeCCCCcc
Confidence 53 344444 89999996433 4566788999999999999 8888888899999999999999997555
Q ss_pred HHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHc--C
Q 003881 417 VEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK--G 494 (789)
Q Consensus 417 i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~--g 494 (789)
.-.++-.-+++...|.. .+.....|...+.... +.--...+ +++...+|++...+|..+..+.++..|++. .
T Consensus 756 TL~Msm~GiRdlSvI~T--PP~~R~pV~T~V~~~d-~~~ireAI---~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPE 829 (1139)
T COG1197 756 TLNMSLSGIRDLSVIAT--PPEDRLPVKTFVSEYD-DLLIREAI---LRELLRGGQVFYVHNRVESIEKKAERLRELVPE 829 (1139)
T ss_pred hHHHHHhcchhhhhccC--CCCCCcceEEEEecCC-hHHHHHHH---HHHHhcCCEEEEEecchhhHHHHHHHHHHhCCc
Confidence 55555555555444332 2333334444433222 11112222 334446899999999999999999999886 5
Q ss_pred CceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEcCCCC-HHHHHHHHhhcCCCCCCCcEEEE
Q 003881 495 FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARD-MDMHVHRIGRTGRAGDKDGTAYT 573 (789)
Q Consensus 495 ~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s-~~~yiQriGR~gR~G~k~G~~i~ 573 (789)
.++++.||.|+..+.+.++..|.+|+++|||||.+++.|||||+++++|+-+...- ..+..|--||+||.. +.+.||.
T Consensus 830 arI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~-~~AYAYf 908 (1139)
T COG1197 830 ARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSN-KQAYAYF 908 (1139)
T ss_pred eEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCcc-ceEEEEE
Confidence 67999999999999999999999999999999999999999999999999887764 555567779999998 7899999
Q ss_pred EEcccc--HHHHHHHHHHH---HHcCCCccHHHHHHHHhcCcccccccccCCCCCCCCCCCCC
Q 003881 574 LVTQKE--ARFAGELVNSL---IAAGQNVSMELMDLAMKDGRFRSKRDARKGGGKKGKGRGGA 631 (789)
Q Consensus 574 lv~~~d--~~~~~~lv~~l---~~~~q~vp~~l~~~a~~~~~~~~~~~~r~~g~~~g~g~ggg 631 (789)
++.+.. ...+.+.++.+ ...|..+-..+.|+.. |+.|...|..+.|.
T Consensus 909 l~p~~k~lT~~A~kRL~aI~~~~~LGaGf~lA~~DLeI-----------RGaGNlLG~eQSG~ 960 (1139)
T COG1197 909 LYPPQKALTEDAEKRLEAIASFTELGAGFKLAMHDLEI-----------RGAGNLLGEEQSGH 960 (1139)
T ss_pred eecCccccCHHHHHHHHHHHhhhhcCchHHHHhcchhc-----------cccccccCccccCc
Confidence 998642 33444444444 4456667666666655 77888888877764
No 81
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.97 E-value=1.2e-29 Score=300.84 Aligned_cols=332 Identities=19% Similarity=0.282 Sum_probs=263.0
Q ss_pred HHHHH-HHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHH
Q 003881 236 LMHAI-SKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI 314 (789)
Q Consensus 236 l~~~l-~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi 314 (789)
+...+ ...|...++|-|.++|..++.|+|+++.++||.||+++|.||++.. ++..|||.|...|.+..
T Consensus 252 ~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~-----------~gitvVISPL~SLm~DQ 320 (941)
T KOG0351|consen 252 LELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL-----------GGVTVVISPLISLMQDQ 320 (941)
T ss_pred HHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc-----------CCceEEeccHHHHHHHH
Confidence 33333 3468899999999999999999999999999999999999998753 45789999999999766
Q ss_pred HHHHHHHhhhcCCeEEEEECCCChHHH---HHHHhcC---CcEEEeChHHHHHHH--hhcccccCc---eeEEEEeccch
Q 003881 315 YLETKKFAKSHGIRVSAVYGGMSKLDQ---FKELKAG---CEIVIATPGRLIDML--KMKALTMSR---VTYLVLDEADR 383 (789)
Q Consensus 315 ~~~~~~~~~~~~i~v~~~~gg~~~~~~---~~~l~~~---~dIiV~Tp~~L~~~l--~~~~~~l~~---i~~lVvDEah~ 383 (789)
...+. ..+|....+.++....++ ++.+..+ ++|+..||+.+...- ......|.. +.++||||||.
T Consensus 321 v~~L~----~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHC 396 (941)
T KOG0351|consen 321 VTHLS----KKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHC 396 (941)
T ss_pred HHhhh----hcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHH
Confidence 54443 348999999998887644 3344444 899999999986532 222334444 89999999999
Q ss_pred hccCC--ChHHHHHHHh--hcCCCceEEEEeccCcHHHHHHHHHHhC--CCeEEeeccccCcccceeEEEEecCCC-ccc
Q 003881 384 MFDLG--FEPQIRSIVG--QIRPDRQTLLFSATMPRKVEKLAREILS--DPVRVTVGEVGMANEDITQVVHVIPSD-AEK 456 (789)
Q Consensus 384 m~~~~--f~~~i~~il~--~l~~~~q~ll~SAT~~~~i~~l~~~~l~--~p~~i~i~~~~~~~~~i~q~~~~~~~~-~~k 456 (789)
...|+ |.+.++.+.. .--+...+|.+|||.+..++.-+...++ +|..+. ......++.-. +.... ...
T Consensus 397 VSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~---~sfnR~NL~ye--V~~k~~~~~ 471 (941)
T KOG0351|consen 397 VSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFK---SSFNRPNLKYE--VSPKTDKDA 471 (941)
T ss_pred hhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceec---ccCCCCCceEE--EEeccCccc
Confidence 99997 7777665432 2223478999999998888776666554 343221 22233333332 22222 344
Q ss_pred HHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCC
Q 003881 457 LPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDI 536 (789)
Q Consensus 457 ~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI 536 (789)
...++..+........+||||.++.+|+.++..|...++.+..+|.+|+..+|..+-..|..++++|+|||=++++|||-
T Consensus 472 ~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK 551 (941)
T KOG0351|consen 472 LLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDK 551 (941)
T ss_pred hHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCC
Confidence 55566667777677899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHH
Q 003881 537 KSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVN 588 (789)
Q Consensus 537 ~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~ 588 (789)
|+|+.||+|.+|.+++.|.|-+||+||.| ....|++|+...|...+..++.
T Consensus 552 ~DVR~ViH~~lPks~E~YYQE~GRAGRDG-~~s~C~l~y~~~D~~~l~~ll~ 602 (941)
T KOG0351|consen 552 PDVRFVIHYSLPKSFEGYYQEAGRAGRDG-LPSSCVLLYGYADISELRRLLT 602 (941)
T ss_pred CceeEEEECCCchhHHHHHHhccccCcCC-CcceeEEecchhHHHHHHHHHH
Confidence 99999999999999999999999999999 6899999999887766555543
No 82
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.97 E-value=5.3e-30 Score=284.90 Aligned_cols=317 Identities=20% Similarity=0.348 Sum_probs=233.3
Q ss_pred CCCcHHHHHHHHHHH----cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHH
Q 003881 246 EKPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il----~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~ 321 (789)
-.+++||.++++|+. +|-++|+..+||.|||++ .+.+|.++.... ...||. |||||...|. .|.+++++|
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~---~~~GPf-LVi~P~StL~-NW~~Ef~rf 239 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRK---GIPGPF-LVIAPKSTLD-NWMNEFKRF 239 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhc---CCCCCe-EEEeeHhhHH-HHHHHHHHh
Confidence 378999999999987 567899999999999998 666777765432 234675 9999998887 799999999
Q ss_pred hhhcCCeEEEEECCCChHHHHH-HH--hcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHh
Q 003881 322 AKSHGIRVSAVYGGMSKLDQFK-EL--KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVG 398 (789)
Q Consensus 322 ~~~~~i~v~~~~gg~~~~~~~~-~l--~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~ 398 (789)
++ ++++++++|.......+. .+ ....+|+|+||+..+.. +..+.--.|.||||||||||.+.. ..+..++.
T Consensus 240 ~P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~~--s~L~~~lr 313 (971)
T KOG0385|consen 240 TP--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNEK--SKLSKILR 313 (971)
T ss_pred CC--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcchh--hHHHHHHH
Confidence 97 789999999764433322 22 23589999999988764 233334478999999999998753 34446666
Q ss_pred hcCCCceEEEEecc-CcHHHHHH---------------------------------------------------------
Q 003881 399 QIRPDRQTLLFSAT-MPRKVEKL--------------------------------------------------------- 420 (789)
Q Consensus 399 ~l~~~~q~ll~SAT-~~~~i~~l--------------------------------------------------------- 420 (789)
.+....+ |++|.| +.+++.+|
T Consensus 314 ~f~~~nr-LLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sL 392 (971)
T KOG0385|consen 314 EFKTDNR-LLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSL 392 (971)
T ss_pred Hhcccce-eEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcC
Confidence 6654443 455555 44433333
Q ss_pred ------------------------------------------------HHHHhCCCeEEeeccccCcccceeEEEEecCC
Q 003881 421 ------------------------------------------------AREILSDPVRVTVGEVGMANEDITQVVHVIPS 452 (789)
Q Consensus 421 ------------------------------------------------~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~ 452 (789)
+++.|.+|..+.-...+ +.. .....+..
T Consensus 393 ppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg---~py-ttdehLv~ 468 (971)
T KOG0385|consen 393 PPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPG---PPY-TTDEHLVT 468 (971)
T ss_pred CCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCC---CCC-CcchHHHh
Confidence 22223333322221110 000 00011112
Q ss_pred CcccHHHHHHhcCCCCC-CCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcC---CcceEEeeh
Q 003881 453 DAEKLPWLLEKLPGMID-DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSG---VYHVLIATD 528 (789)
Q Consensus 453 ~~~k~~~L~~~L~~~~~-~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G---~~~VLVaT~ 528 (789)
...|+..|..+|..+.. +.+||||.+....++.|.+++.-.+|.++.|.|.++..+|..+|+.|... .+-+|++|.
T Consensus 469 nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTR 548 (971)
T KOG0385|consen 469 NSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTR 548 (971)
T ss_pred cCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecc
Confidence 34666666666665544 44999999999999999999999999999999999999999999999764 456899999
Q ss_pred hhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCC-CcEEEEEEcccc
Q 003881 529 VAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDK-DGTAYTLVTQKE 579 (789)
Q Consensus 529 v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k-~G~~i~lv~~~d 579 (789)
+++.|||+..+++||.||..|||+.-+|...||+|+|++ +.++|.|++.+-
T Consensus 549 AGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitent 600 (971)
T KOG0385|consen 549 AGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENT 600 (971)
T ss_pred ccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccch
Confidence 999999999999999999999999999999999999954 567788888764
No 83
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.97 E-value=1.1e-28 Score=291.72 Aligned_cols=315 Identities=20% Similarity=0.252 Sum_probs=220.1
Q ss_pred CCCcHHHHHHHHHHHcC---CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHh
Q 003881 246 EKPTSIQCQALPIILSG---RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~g---rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~ 322 (789)
..||++|.++++.++.+ +++++.++||+|||.+|+.++...+. .+.++|||+||++|+.|+++.+++.+
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~--------~g~~vLvLvPt~~L~~Q~~~~l~~~f 214 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA--------QGKQALVLVPEIALTPQMLARFRARF 214 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH--------cCCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 36899999999999974 78999999999999999887766652 25679999999999999999988764
Q ss_pred hhcCCeEEEEECCCChHHHHH---HHhc-CCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCC---hHHHH-
Q 003881 323 KSHGIRVSAVYGGMSKLDQFK---ELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGF---EPQIR- 394 (789)
Q Consensus 323 ~~~~i~v~~~~gg~~~~~~~~---~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f---~~~i~- 394 (789)
+.++..++|+.+..+... .+.. ..+|||+|+..+. ..+.++.+|||||+|...-+.. ....+
T Consensus 215 ---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~ 284 (679)
T PRK05580 215 ---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARD 284 (679)
T ss_pred ---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHH
Confidence 678999999987655433 3333 4799999998764 3578899999999997543221 11112
Q ss_pred -HHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccC-cccceeEEEEecC---C-C-cccHHHHHHhcCCC
Q 003881 395 -SIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGM-ANEDITQVVHVIP---S-D-AEKLPWLLEKLPGM 467 (789)
Q Consensus 395 -~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~-~~~~i~q~~~~~~---~-~-~~k~~~L~~~L~~~ 467 (789)
.++.....+.++|++|||++......+.. +....+....... ........+..-. . . ..-...|++.+.+.
T Consensus 285 va~~ra~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~ 362 (679)
T PRK05580 285 LAVVRAKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQR 362 (679)
T ss_pred HHHHHhhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHH
Confidence 22333456789999999987554433321 2222222221111 0011111111100 0 0 00113344445444
Q ss_pred CCC-CCEEEEeccc------------------------------------------------------------ccHHHH
Q 003881 468 IDD-GDVLVFASKK------------------------------------------------------------TTVDEI 486 (789)
Q Consensus 468 ~~~-~kvLVF~~s~------------------------------------------------------------~~a~~l 486 (789)
+.. .++|||+|++ ..++.+
T Consensus 363 l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~ 442 (679)
T PRK05580 363 LERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERL 442 (679)
T ss_pred HHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHH
Confidence 433 4788888752 134678
Q ss_pred HHHHHHc--CCceeeccCCCCH--HHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEcCC--CC----------
Q 003881 487 ESQLAQK--GFKAAALHGDKDQ--ASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIA--RD---------- 550 (789)
Q Consensus 487 ~~~L~~~--g~~v~~lhg~~~~--~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p--~s---------- 550 (789)
++.|.+. +.++..+|+++.+ .+++.+++.|++|+.+|||+|+++++|+|+|+|++|+.+|.+ .+
T Consensus 443 ~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~ 522 (679)
T PRK05580 443 EEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERT 522 (679)
T ss_pred HHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHH
Confidence 8888776 7889999999974 679999999999999999999999999999999999766543 32
Q ss_pred HHHHHHHHhhcCCCCCCCcEEEEEEccccHH
Q 003881 551 MDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581 (789)
Q Consensus 551 ~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~ 581 (789)
...|+|++||+||.+ +.|.+++.....+..
T Consensus 523 ~~~l~q~~GRagR~~-~~g~viiqT~~p~~~ 552 (679)
T PRK05580 523 FQLLTQVAGRAGRAE-KPGEVLIQTYHPEHP 552 (679)
T ss_pred HHHHHHHHhhccCCC-CCCEEEEEeCCCCCH
Confidence 367899999999988 679999776555443
No 84
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=1.3e-29 Score=308.11 Aligned_cols=304 Identities=20% Similarity=0.312 Sum_probs=215.5
Q ss_pred HHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEE
Q 003881 253 CQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAV 332 (789)
Q Consensus 253 ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~ 332 (789)
.+.+..+..++.+|++|+||||||.+ +|.+...... ....++++..|.|..|..+...+.+.. +..+...
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~~-----~~~~~I~~tQPRRlAA~svA~RvA~el---g~~lG~~ 142 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELGR-----GSHGLIGHTQPRRLAARTVAQRIAEEL---GTPLGEK 142 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcCC-----CCCceEecCCccHHHHHHHHHHHHHHh---CCCcceE
Confidence 34566666777889999999999985 6765443221 112356677899888877765555543 4555455
Q ss_pred ECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccc-hhccCCChHH-HHHHHhhcCCCceEEEEe
Q 003881 333 YGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD-RMFDLGFEPQ-IRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 333 ~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah-~m~~~~f~~~-i~~il~~l~~~~q~ll~S 410 (789)
+|.....+. .......|+|+|+|+|+..+.... .|..+++||||||| ++++.+|.-. +..++. .+++.|+|+||
T Consensus 143 VGY~vR~~~--~~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~-~rpdLKlIlmS 218 (1283)
T TIGR01967 143 VGYKVRFHD--QVSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLP-RRPDLKIIITS 218 (1283)
T ss_pred EeeEEcCCc--ccCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHh-hCCCCeEEEEe
Confidence 554222111 113458899999999999887654 48999999999999 6999888765 444543 45788999999
Q ss_pred ccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCC-----cccHHHHHHhcCCC--CCCCCEEEEecccccH
Q 003881 411 ATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSD-----AEKLPWLLEKLPGM--IDDGDVLVFASKKTTV 483 (789)
Q Consensus 411 AT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~-----~~k~~~L~~~L~~~--~~~~kvLVF~~s~~~a 483 (789)
||+.. ..+++.|...|+ +.+... ...+...+..+... ..+...+...+... ...+.+|||++++.++
T Consensus 219 ATld~--~~fa~~F~~apv-I~V~Gr---~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI 292 (1283)
T TIGR01967 219 ATIDP--ERFSRHFNNAPI-IEVSGR---TYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREI 292 (1283)
T ss_pred CCcCH--HHHHHHhcCCCE-EEECCC---cccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHH
Confidence 99974 456666655554 333221 12233333322211 12223333322221 1457999999999999
Q ss_pred HHHHHHHHHcC---CceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEcCCC-----------
Q 003881 484 DEIESQLAQKG---FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIAR----------- 549 (789)
Q Consensus 484 ~~l~~~L~~~g---~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~----------- 549 (789)
+.+++.|.+.+ +.+..|||+|++.+|..+++.+ +..+|||||+++++|||||+|++||+++.+.
T Consensus 293 ~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~ 370 (1283)
T TIGR01967 293 RDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQ 370 (1283)
T ss_pred HHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCcc
Confidence 99999998864 4588999999999999997654 3468999999999999999999999988542
Q ss_pred -------CHHHHHHHHhhcCCCCCCCcEEEEEEccccH
Q 003881 550 -------DMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (789)
Q Consensus 550 -------s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~ 580 (789)
+...|.||.||+||.+ .|.||.|++..+.
T Consensus 371 ~L~~~~ISkasa~QRaGRAGR~~--~G~cyRLyte~~~ 406 (1283)
T TIGR01967 371 RLPIEPISQASANQRKGRCGRVA--PGICIRLYSEEDF 406 (1283)
T ss_pred ccCCccCCHHHHHHHhhhhCCCC--CceEEEecCHHHH
Confidence 5679999999999998 7999999987654
No 85
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.97 E-value=4.2e-29 Score=299.85 Aligned_cols=320 Identities=18% Similarity=0.266 Sum_probs=220.2
Q ss_pred CCCcHHHHHHHHHHH----cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHH
Q 003881 246 EKPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il----~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~ 321 (789)
.+++|||.+++.|++ ++.++|++.+||.|||++. +.++.++...+ .....+|||||. .|..||.+++.+|
T Consensus 168 ~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQa-IalL~~L~~~~----~~~gp~LIVvP~-SlL~nW~~Ei~kw 241 (1033)
T PLN03142 168 GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQT-ISLLGYLHEYR----GITGPHMVVAPK-STLGNWMNEIRRF 241 (1033)
T ss_pred cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHH-HHHHHHHHHhc----CCCCCEEEEeCh-HHHHHHHHHHHHH
Confidence 378999999999986 5789999999999999984 44555554321 112347999997 5667999999999
Q ss_pred hhhcCCeEEEEECCCChHHHHHH--H-hcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHh
Q 003881 322 AKSHGIRVSAVYGGMSKLDQFKE--L-KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVG 398 (789)
Q Consensus 322 ~~~~~i~v~~~~gg~~~~~~~~~--l-~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~ 398 (789)
+. .++++.++|.......... + ...++|||+||+.+..... .+.-..|.+|||||||+|.+. ...+..++.
T Consensus 242 ~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~--~Sklskalr 315 (1033)
T PLN03142 242 CP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNE--NSLLSKTMR 315 (1033)
T ss_pred CC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCH--HHHHHHHHH
Confidence 85 5677777775443322221 1 2358999999998876432 233346889999999998874 334555566
Q ss_pred hcCCCceEEEEeccC-cHHHHHHHHH--HhC-C--------------------------------CeEEee--ccccCcc
Q 003881 399 QIRPDRQTLLFSATM-PRKVEKLARE--ILS-D--------------------------------PVRVTV--GEVGMAN 440 (789)
Q Consensus 399 ~l~~~~q~ll~SAT~-~~~i~~l~~~--~l~-~--------------------------------p~~i~i--~~~~~~~ 440 (789)
.+.. ...+++|+|+ .+.+.++... |+. + |..+.- .......
T Consensus 316 ~L~a-~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~L 394 (1033)
T PLN03142 316 LFST-NYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGL 394 (1033)
T ss_pred Hhhc-CcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhC
Confidence 6653 3457889996 3333222110 000 0 000000 0000000
Q ss_pred cceeEEEEecC--------------------------------------------------------------CCcccHH
Q 003881 441 EDITQVVHVIP--------------------------------------------------------------SDAEKLP 458 (789)
Q Consensus 441 ~~i~q~~~~~~--------------------------------------------------------------~~~~k~~ 458 (789)
+.....+..+. ....|+.
T Consensus 395 PpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~ 474 (1033)
T PLN03142 395 PPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMV 474 (1033)
T ss_pred CCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHH
Confidence 00000000000 1124444
Q ss_pred HHHHhcCCCC-CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcC---CcceEEeehhhhccC
Q 003881 459 WLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSG---VYHVLIATDVAARGL 534 (789)
Q Consensus 459 ~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G---~~~VLVaT~v~~rGl 534 (789)
.|..+|..+. .+.+||||++....++.|.++|...++.++.|||.++..+|..+++.|++. .+.+|++|.+++.||
T Consensus 475 lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGI 554 (1033)
T PLN03142 475 LLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGI 554 (1033)
T ss_pred HHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCC
Confidence 4555554433 345999999999999999999999999999999999999999999999763 346799999999999
Q ss_pred CCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCC-cEEEEEEccc
Q 003881 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKD-GTAYTLVTQK 578 (789)
Q Consensus 535 DI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~-G~~i~lv~~~ 578 (789)
|+..+++||+||+||||..+.|++||++|.|++. ..+|.|++..
T Consensus 555 NLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 555 NLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEY 599 (1033)
T ss_pred chhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCC
Confidence 9999999999999999999999999999999554 4567778765
No 86
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=7.3e-29 Score=252.41 Aligned_cols=202 Identities=54% Similarity=0.880 Sum_probs=186.0
Q ss_pred cccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcC
Q 003881 227 FEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP 306 (789)
Q Consensus 227 f~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~P 306 (789)
|+++++++.+.+.+.+.++..|+++|.++++.++++++++++++||+|||++|++|++.++...+ ...++++||++|
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~---~~~~~~viii~p 77 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP---KKDGPQALILAP 77 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc---ccCCceEEEEcC
Confidence 67889999999999999999999999999999999999999999999999999999999987653 135788999999
Q ss_pred cHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhcc
Q 003881 307 TRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD 386 (789)
Q Consensus 307 treLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~ 386 (789)
|++|+.|+...+..+....++++..++|+.........+..+++|+|+||+.|.+++......+..+.+|||||+|.+.+
T Consensus 78 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~ 157 (203)
T cd00268 78 TRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLD 157 (203)
T ss_pred CHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhc
Confidence 99999999999999988778999999999988777666766899999999999999988878889999999999999999
Q ss_pred CCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEE
Q 003881 387 LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRV 431 (789)
Q Consensus 387 ~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i 431 (789)
.++...+..++..++..+|++++|||+++.+..++..++.+|+.+
T Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 158 MGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred cChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 999999999999999999999999999999999999999998765
No 87
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.96 E-value=8.3e-28 Score=248.03 Aligned_cols=335 Identities=19% Similarity=0.320 Sum_probs=257.8
Q ss_pred cCCCCHHHHHHHHHc-CCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCc
Q 003881 229 DCGFSTQLMHAISKQ-GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (789)
Q Consensus 229 ~~~l~~~l~~~l~~~-g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~Pt 307 (789)
+++++.+..+.|+.. ...+++|.|..+|+..+.+.+++++.|||.||+++|.||+|.. ...+|||||.
T Consensus 75 ~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-----------dg~alvi~pl 143 (695)
T KOG0353|consen 75 DFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-----------DGFALVICPL 143 (695)
T ss_pred CCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc-----------CCceEeechh
Confidence 345566666655543 5678999999999999999999999999999999999999864 4568999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHH---Hh---cCCcEEEeChHHHHH---HHhh--cccccCceeEE
Q 003881 308 RELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LK---AGCEIVIATPGRLID---MLKM--KALTMSRVTYL 376 (789)
Q Consensus 308 reLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~---l~---~~~dIiV~Tp~~L~~---~l~~--~~~~l~~i~~l 376 (789)
..|+....-.++.+ |+....+....++.+.... +. ....+|..||+.+.. ++.+ +.+....+.+|
T Consensus 144 islmedqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~i 219 (695)
T KOG0353|consen 144 ISLMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLI 219 (695)
T ss_pred HHHHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEE
Confidence 99998777777766 7777776666555432211 11 236799999999853 2222 34556788999
Q ss_pred EEeccchhccCC--ChHHHH--HHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCC
Q 003881 377 VLDEADRMFDLG--FEPQIR--SIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPS 452 (789)
Q Consensus 377 VvDEah~m~~~~--f~~~i~--~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~ 452 (789)
-|||+|....|| |.+.+. .++.+--+...+|.++||.++.+..-+..++.-...+.. ..+...+++...+..-+.
T Consensus 220 aidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf-~a~fnr~nl~yev~qkp~ 298 (695)
T KOG0353|consen 220 AIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTF-RAGFNRPNLKYEVRQKPG 298 (695)
T ss_pred eecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhhee-ecccCCCCceeEeeeCCC
Confidence 999999999987 555443 445554567789999999998888777776653222211 122333444444433333
Q ss_pred -CcccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhh
Q 003881 453 -DAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAA 531 (789)
Q Consensus 453 -~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~ 531 (789)
..+-...+..++..-..+..-||||-++.+|+.++..|+..|+....+|..|.+.+|.-+-+.|-.|++.|+|||-+.+
T Consensus 299 n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafg 378 (695)
T KOG0353|consen 299 NEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFG 378 (695)
T ss_pred ChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeec
Confidence 2333455566666655566789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEEcCCCCHHHHHH-------------------------------------------HHhhcCCCCCCC
Q 003881 532 RGLDIKSIKSVVNFDIARDMDMHVH-------------------------------------------RIGRTGRAGDKD 568 (789)
Q Consensus 532 rGlDI~~v~~VI~~d~p~s~~~yiQ-------------------------------------------riGR~gR~G~k~ 568 (789)
+|||-|+|+.||+..+|.+++.|.| -.||+||.+ .+
T Consensus 379 mgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~-~~ 457 (695)
T KOG0353|consen 379 MGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDD-MK 457 (695)
T ss_pred ccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCC-Cc
Confidence 9999999999999999999999999 569999998 56
Q ss_pred cEEEEEEccccH
Q 003881 569 GTAYTLVTQKEA 580 (789)
Q Consensus 569 G~~i~lv~~~d~ 580 (789)
..|++++--.|.
T Consensus 458 a~cilyy~~~di 469 (695)
T KOG0353|consen 458 ADCILYYGFADI 469 (695)
T ss_pred ccEEEEechHHH
Confidence 899988765554
No 88
>PRK09694 helicase Cas3; Provisional
Probab=99.96 E-value=7.4e-27 Score=278.25 Aligned_cols=312 Identities=18% Similarity=0.179 Sum_probs=203.8
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhh
Q 003881 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (789)
Q Consensus 245 ~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~ 324 (789)
...|+|+|..+.........+|+.||||+|||.++++++.. ++.. .....++|++||+++++|+++.+.+++..
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~-l~~~-----~~~~gi~~aLPT~Atan~m~~Rl~~~~~~ 357 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWR-LIDQ-----GLADSIIFALPTQATANAMLSRLEALASK 357 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHH-HHHh-----CCCCeEEEECcHHHHHHHHHHHHHHHHHH
Confidence 35899999988655445567899999999999997766553 3322 22457899999999999999999876553
Q ss_pred c--CCeEEEEECCCChHHHH--------------------HHHhc-------CCcEEEeChHHHHHHHhh-cccccCce-
Q 003881 325 H--GIRVSAVYGGMSKLDQF--------------------KELKA-------GCEIVIATPGRLIDMLKM-KALTMSRV- 373 (789)
Q Consensus 325 ~--~i~v~~~~gg~~~~~~~--------------------~~l~~-------~~dIiV~Tp~~L~~~l~~-~~~~l~~i- 373 (789)
. ...+.+++|........ ..+.. -.+|+|||...++..+-. +...+..+
T Consensus 358 ~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~ 437 (878)
T PRK09694 358 LFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFG 437 (878)
T ss_pred hcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHh
Confidence 2 34567777655321110 01111 169999999888754432 22223323
Q ss_pred ---eEEEEeccchhccCCChHHHHHHHhhc-CCCceEEEEeccCcHHHHHHH-HHHhCC-C--------eEEeeccc---
Q 003881 374 ---TYLVLDEADRMFDLGFEPQIRSIVGQI-RPDRQTLLFSATMPRKVEKLA-REILSD-P--------VRVTVGEV--- 436 (789)
Q Consensus 374 ---~~lVvDEah~m~~~~f~~~i~~il~~l-~~~~q~ll~SAT~~~~i~~l~-~~~l~~-p--------~~i~i~~~--- 436 (789)
++|||||+|.+-. -....+..++..+ .....+|+||||+|..+...+ ..|-.. + ........
T Consensus 438 La~svvIiDEVHAyD~-ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~ 516 (878)
T PRK09694 438 LGRSVLIVDEVHAYDA-YMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQ 516 (878)
T ss_pred hccCeEEEechhhCCH-HHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccce
Confidence 5899999997522 1223344444443 235679999999998876443 333211 1 00000000
Q ss_pred ----cCc----ccceeEEEEecC-CCcccHHHHHHhcC-CCCCCCCEEEEecccccHHHHHHHHHHcC---CceeeccCC
Q 003881 437 ----GMA----NEDITQVVHVIP-SDAEKLPWLLEKLP-GMIDDGDVLVFASKKTTVDEIESQLAQKG---FKAAALHGD 503 (789)
Q Consensus 437 ----~~~----~~~i~q~~~~~~-~~~~k~~~L~~~L~-~~~~~~kvLVF~~s~~~a~~l~~~L~~~g---~~v~~lhg~ 503 (789)
... .......+.... ........+++.+. .....+++|||||++..|..+++.|++.. ..+..+|+.
T Consensus 517 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsr 596 (878)
T PRK09694 517 RFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHAR 596 (878)
T ss_pred eeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCC
Confidence 000 000111111111 10011122233222 22345689999999999999999999764 679999999
Q ss_pred CCHHHH----HHHHHHh-hcCC---cceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCC
Q 003881 504 KDQASR----MEILQKF-KSGV---YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGD 566 (789)
Q Consensus 504 ~~~~eR----~~~l~~F-~~G~---~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~ 566 (789)
+.+.+| .++++.| ++|+ ..|||||+++++|||| ++++||....| ++.++||+||++|.+.
T Consensus 597 f~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 597 FTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 999999 4678888 6666 4799999999999999 68999998888 7899999999999984
No 89
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.96 E-value=9.6e-28 Score=271.07 Aligned_cols=294 Identities=20% Similarity=0.282 Sum_probs=203.2
Q ss_pred CCCcHHHHHHHHHHHc----CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHH
Q 003881 246 EKPTSIQCQALPIILS----GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~----grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~ 321 (789)
..|+++|.+++..+.. .+..++++|||+|||++++..+ ..+ ...+||||||++|+.||.+.+.++
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~-~~~----------~~~~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAI-AEL----------KRSTLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHH-HHh----------cCCEEEEECcHHHHHHHHHHHHHh
Confidence 5799999999999998 8999999999999998755443 333 222999999999999998777776
Q ss_pred hhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcC
Q 003881 322 AKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR 401 (789)
Q Consensus 322 ~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~ 401 (789)
.... .....+++...... . ..|+|+|+..+........+....+.+|||||||++....+. .+...+.
T Consensus 104 ~~~~--~~~g~~~~~~~~~~-----~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~----~~~~~~~ 171 (442)
T COG1061 104 LLLN--DEIGIYGGGEKELE-----P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYR----RILELLS 171 (442)
T ss_pred cCCc--cccceecCceeccC-----C-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHH----HHHHhhh
Confidence 5321 13334444333211 1 469999999987752112333447999999999997665433 3333333
Q ss_pred CCceEEEEeccCcHHHHHHHH---HHhCCCeEEeeccccC------cccceeEEEEecC---------------------
Q 003881 402 PDRQTLLFSATMPRKVEKLAR---EILSDPVRVTVGEVGM------ANEDITQVVHVIP--------------------- 451 (789)
Q Consensus 402 ~~~q~ll~SAT~~~~i~~l~~---~~l~~p~~i~i~~~~~------~~~~i~q~~~~~~--------------------- 451 (789)
....+|+||||+++.-..... .+++ |....+..... .+..+........
T Consensus 172 ~~~~~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~ 250 (442)
T COG1061 172 AAYPRLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRAR 250 (442)
T ss_pred cccceeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhh
Confidence 222289999998744311111 1111 22222211110 0000111100000
Q ss_pred --------------CCcccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhh
Q 003881 452 --------------SDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFK 517 (789)
Q Consensus 452 --------------~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~ 517 (789)
....+...+..++.......++||||.++.++..++..|...++ +..+.+..+..+|..+++.|+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr 329 (442)
T COG1061 251 GTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFR 329 (442)
T ss_pred hhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHH
Confidence 01112222223333222356999999999999999999998888 999999999999999999999
Q ss_pred cCCcceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCC
Q 003881 518 SGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRA 564 (789)
Q Consensus 518 ~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~ 564 (789)
.|.+++||++.++.+|+|+|+++++|...+..+...|+||+||..|.
T Consensus 330 ~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 330 TGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred cCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 99999999999999999999999999999999999999999999993
No 90
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.96 E-value=1.3e-28 Score=285.73 Aligned_cols=315 Identities=19% Similarity=0.311 Sum_probs=228.4
Q ss_pred CCCcHHHHHHHHHHH----cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHH
Q 003881 246 EKPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il----~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~ 321 (789)
..++.||.++++|++ .+.++|++.+||.|||++ .+.+|.+++.... -.||. |||+|...+. .|.+++..|
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvq-ti~fl~~l~~~~~---~~gpf-lvvvplst~~-~W~~ef~~w 442 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQ-TITFLSYLFHSLQ---IHGPF-LVVVPLSTIT-AWEREFETW 442 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchH-HHHHHHHHHHhhh---ccCCe-EEEeehhhhH-HHHHHHHHH
Confidence 579999999999987 568999999999999987 5666777665432 24664 8899986665 699999999
Q ss_pred hhhcCCeEEEEECCCChHHHHHHHh----c-----CCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHH
Q 003881 322 AKSHGIRVSAVYGGMSKLDQFKELK----A-----GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQ 392 (789)
Q Consensus 322 ~~~~~i~v~~~~gg~~~~~~~~~l~----~-----~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~ 392 (789)
+ .+++++++|.....+.++... . ..+++++|++.++.-. ..+.--.|.+++|||||++.+. ...
T Consensus 443 ~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk--~~L~~i~w~~~~vDeahrLkN~--~~~ 515 (1373)
T KOG0384|consen 443 T---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDK--AELSKIPWRYLLVDEAHRLKND--ESK 515 (1373)
T ss_pred h---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccH--hhhccCCcceeeecHHhhcCch--HHH
Confidence 7 789999999887776665542 1 3799999998876532 2333346789999999998864 334
Q ss_pred HHHHHhhcCCCceEEEEecc-CcHHHHHHHHH------------------------------------------------
Q 003881 393 IRSIVGQIRPDRQTLLFSAT-MPRKVEKLARE------------------------------------------------ 423 (789)
Q Consensus 393 i~~il~~l~~~~q~ll~SAT-~~~~i~~l~~~------------------------------------------------ 423 (789)
+...+..+....+ |++|.| +.+++.+|...
T Consensus 516 l~~~l~~f~~~~r-llitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvek 594 (1373)
T KOG0384|consen 516 LYESLNQFKMNHR-LLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEK 594 (1373)
T ss_pred HHHHHHHhcccce-eeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhcc
Confidence 4444555554443 555555 55555555321
Q ss_pred -----------------------------------------------------HhCCCeEEeeccccCcccceeEEEE--
Q 003881 424 -----------------------------------------------------ILSDPVRVTVGEVGMANEDITQVVH-- 448 (789)
Q Consensus 424 -----------------------------------------------------~l~~p~~i~i~~~~~~~~~i~q~~~-- 448 (789)
+|.+|..|...... +.+.+.
T Consensus 595 slp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~-----~~~~~~~~ 669 (1373)
T KOG0384|consen 595 SLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEK-----ILGDFRDK 669 (1373)
T ss_pred CCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHH-----HHHhhhhc
Confidence 11112211110000 000000
Q ss_pred -------ecCCCcccHHHHHHhcCCCCCC-CCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhc--
Q 003881 449 -------VIPSDAEKLPWLLEKLPGMIDD-GDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKS-- 518 (789)
Q Consensus 449 -------~~~~~~~k~~~L~~~L~~~~~~-~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~-- 518 (789)
.+-....|+..|-.+|.++... ++||||.+.+..++.|++||...+|++..|.|.+....|..+|++|..
T Consensus 670 ~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~ 749 (1373)
T KOG0384|consen 670 MRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPD 749 (1373)
T ss_pred chHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCC
Confidence 0000122333333344443333 599999999999999999999999999999999999999999999976
Q ss_pred -CCcceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCC-CcEEEEEEcccc
Q 003881 519 -GVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDK-DGTAYTLVTQKE 579 (789)
Q Consensus 519 -G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k-~G~~i~lv~~~d 579 (789)
..+.+|+||.+++-|||+..+++||+||..|||+.-+|...||+|+|++ ...+|.||+.+-
T Consensus 750 SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 750 SDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred CCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCc
Confidence 4688999999999999999999999999999999999999999999955 456889998864
No 91
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=3.5e-27 Score=275.30 Aligned_cols=317 Identities=20% Similarity=0.255 Sum_probs=224.6
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003881 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (789)
Q Consensus 247 ~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~ 326 (789)
.|+++|.-+--.+.. .-|+.++||+|||++|++|++..++. +..++||+||++||.|.++++..+...++
T Consensus 82 ~~ydvQliGg~~Lh~--G~Iaem~TGeGKTL~a~Lpa~~~al~--------G~~V~VvTpn~yLA~qd~e~m~~l~~~lG 151 (896)
T PRK13104 82 RHFDVQLIGGMVLHE--GNIAEMRTGEGKTLVATLPAYLNAIS--------GRGVHIVTVNDYLAKRDSQWMKPIYEFLG 151 (896)
T ss_pred CcchHHHhhhhhhcc--CccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEcCCHHHHHHHHHHHHHHhcccC
Confidence 456666655544444 45899999999999999999987753 34589999999999999999999999999
Q ss_pred CeEEEEECCCChHHHHHHHhcCCcEEEeChHHH-HHHHhhc-cccc-----CceeEEEEeccchhcc-CC----------
Q 003881 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMK-ALTM-----SRVTYLVLDEADRMFD-LG---------- 388 (789)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L-~~~l~~~-~~~l-----~~i~~lVvDEah~m~~-~~---------- 388 (789)
+++.+++||.+...+...+ .+||+++||++| .++|..+ .+.+ ..+.++||||||.|+- ..
T Consensus 152 Ltv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~ 229 (896)
T PRK13104 152 LTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAA 229 (896)
T ss_pred ceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCC
Confidence 9999999998876654433 589999999999 9988765 3334 5899999999998742 00
Q ss_pred -----ChHHHHHHHhhcCC--------------CceEEEEec--------------------------------------
Q 003881 389 -----FEPQIRSIVGQIRP--------------DRQTLLFSA-------------------------------------- 411 (789)
Q Consensus 389 -----f~~~i~~il~~l~~--------------~~q~ll~SA-------------------------------------- 411 (789)
....+..++..+.. ..+.+.+|-
T Consensus 230 ~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL 309 (896)
T PRK13104 230 EDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAAL 309 (896)
T ss_pred ccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHH
Confidence 11122222222211 112222222
Q ss_pred ------------------------------------------------------------------------------cC
Q 003881 412 ------------------------------------------------------------------------------TM 413 (789)
Q Consensus 412 ------------------------------------------------------------------------------T~ 413 (789)
|.
T Consensus 310 ~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa 389 (896)
T PRK13104 310 KAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTA 389 (896)
T ss_pred HHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCC
Confidence 11
Q ss_pred cHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHHHHHhcCCCC-CCCCEEEEecccccHHHHHHHHHH
Q 003881 414 PRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQ 492 (789)
Q Consensus 414 ~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~ 492 (789)
.....++.. +++-.+.......+....+ ..-.+......|+..+++.+.+.. .+.+|||||+++..++.|+..|.+
T Consensus 390 ~te~~Ef~~-iY~l~Vv~IPtnkp~~R~d--~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~ 466 (896)
T PRK13104 390 DTEAYEFQQ-IYNLEVVVIPTNRSMIRKD--EADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKK 466 (896)
T ss_pred hhHHHHHHH-HhCCCEEECCCCCCcceec--CCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHH
Confidence 111111110 1110111000000000000 001122234567777777765543 345999999999999999999999
Q ss_pred cCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCC-----------------------------------
Q 003881 493 KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIK----------------------------------- 537 (789)
Q Consensus 493 ~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~----------------------------------- 537 (789)
.++++.+||+.+.+.++..+.+.|+.|. |+|||++++||+||.
T Consensus 467 ~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 544 (896)
T PRK13104 467 ENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEV 544 (896)
T ss_pred cCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHH
Confidence 9999999999999999999999999994 999999999999997
Q ss_pred ---CccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHH
Q 003881 538 ---SIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581 (789)
Q Consensus 538 ---~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~ 581 (789)
+--+||--..+.|----.|-.||+||.| .+|.+..|++-+|.-
T Consensus 545 ~~~GGL~VIgTerhesrRID~QLrGRaGRQG-DPGss~f~lSleD~l 590 (896)
T PRK13104 545 IAAGGLRIIGSERHESRRIDNQLRGRAGRQG-DPGSSRFYLSLEDNL 590 (896)
T ss_pred HHcCCCEEEeeccCchHHHHHHhccccccCC-CCCceEEEEEcCcHH
Confidence 2237888888888888899999999999 689999999877653
No 92
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=4.9e-27 Score=262.79 Aligned_cols=328 Identities=21% Similarity=0.279 Sum_probs=228.2
Q ss_pred CCCcHHHHHHHHHHH----cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHH
Q 003881 246 EKPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il----~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~ 321 (789)
..+.+||++++.|+. ++...|+..+||.|||++ ++.+|..+....... ..+|||||. .|..||..++..|
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQ-iisFLaaL~~S~k~~----~paLIVCP~-Tii~qW~~E~~~w 277 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQ-IISFLAALHHSGKLT----KPALIVCPA-TIIHQWMKEFQTW 277 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchh-HHHHHHHHhhccccc----CceEEEccH-HHHHHHHHHHHHh
Confidence 467899999999987 557789999999999988 566666665543222 348999998 5667999999999
Q ss_pred hhhcCCeEEEEECCCChH--------HHHHH-----HhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCC
Q 003881 322 AKSHGIRVSAVYGGMSKL--------DQFKE-----LKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG 388 (789)
Q Consensus 322 ~~~~~i~v~~~~gg~~~~--------~~~~~-----l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~ 388 (789)
.. .++|.++|+..... ..... ...+.+|+|+|+..|.-. ...+.-..|.|+|+||.|+|-+.+
T Consensus 278 ~p--~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrNpn 353 (923)
T KOG0387|consen 278 WP--PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRNPN 353 (923)
T ss_pred Cc--ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccccCCc
Confidence 86 67888888765521 11111 123478999999877432 223344578999999999998764
Q ss_pred ChHHHHHHHhhcCCCceEEEEecc-CcHHHHHHHHHH-----------------hCCCeEEeeccccC------------
Q 003881 389 FEPQIRSIVGQIRPDRQTLLFSAT-MPRKVEKLAREI-----------------LSDPVRVTVGEVGM------------ 438 (789)
Q Consensus 389 f~~~i~~il~~l~~~~q~ll~SAT-~~~~i~~l~~~~-----------------l~~p~~i~i~~~~~------------ 438 (789)
.++...+..++. .+.|++|.| +.+++.+|...| +..|+. ++....
T Consensus 354 --s~islackki~T-~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~--~GgyaNAs~~qv~~aykc 428 (923)
T KOG0387|consen 354 --SKISLACKKIRT-VHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPIN--RGGYANASPRQVQTAYKC 428 (923)
T ss_pred --cHHHHHHHhccc-cceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhhee--ccccCCCCHHHHHHHHHH
Confidence 345555555543 344555666 455554442211 000100 000000
Q ss_pred -----------------------cccceeEEEEec---------------------------------------------
Q 003881 439 -----------------------ANEDITQVVHVI--------------------------------------------- 450 (789)
Q Consensus 439 -----------------------~~~~i~q~~~~~--------------------------------------------- 450 (789)
....-...+.+|
T Consensus 429 a~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdl 508 (923)
T KOG0387|consen 429 AVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDL 508 (923)
T ss_pred HHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCccc
Confidence 000000001111
Q ss_pred -----------------CCCcccHHHHHHhcCCCCCC-CCEEEEecccccHHHHHHHHH-HcCCceeeccCCCCHHHHHH
Q 003881 451 -----------------PSDAEKLPWLLEKLPGMIDD-GDVLVFASKKTTVDEIESQLA-QKGFKAAALHGDKDQASRME 511 (789)
Q Consensus 451 -----------------~~~~~k~~~L~~~L~~~~~~-~kvLVF~~s~~~a~~l~~~L~-~~g~~v~~lhg~~~~~eR~~ 511 (789)
.....|...|..+|..+... .++|+|.+++.+++.|...|. ..++.++.+.|..+...|..
T Consensus 509 l~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~ 588 (923)
T KOG0387|consen 509 LDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQK 588 (923)
T ss_pred ccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhH
Confidence 11345666777777665544 499999999999999999999 58999999999999999999
Q ss_pred HHHHhhcCCc--ceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcE-EEEEEccc---cHHHHHH
Q 003881 512 ILQKFKSGVY--HVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGT-AYTLVTQK---EARFAGE 585 (789)
Q Consensus 512 ~l~~F~~G~~--~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~-~i~lv~~~---d~~~~~~ 585 (789)
++++|+++.. -+|++|.+++-|||+.+++.||+|||.|||..-.|..-|+.|.|+++.+ +|.|++.. +.-+.++
T Consensus 589 lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQ 668 (923)
T KOG0387|consen 589 LVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQ 668 (923)
T ss_pred HHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHH
Confidence 9999998753 4788999999999999999999999999999999999999999976554 56777764 4444444
Q ss_pred HHH
Q 003881 586 LVN 588 (789)
Q Consensus 586 lv~ 588 (789)
+.+
T Consensus 669 I~K 671 (923)
T KOG0387|consen 669 IFK 671 (923)
T ss_pred HHH
Confidence 443
No 93
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=1.4e-26 Score=264.87 Aligned_cols=292 Identities=18% Similarity=0.257 Sum_probs=197.3
Q ss_pred EEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHH---H
Q 003881 266 IGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ---F 342 (789)
Q Consensus 266 ll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~---~ 342 (789)
|+.++||||||.+|+..+. +++. .+.++|||+|+++|+.|+++.+++.+ +..+..++++.+..+. +
T Consensus 1 LL~g~TGsGKT~v~l~~i~-~~l~-------~g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~ 69 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIE-KVLA-------LGKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAW 69 (505)
T ss_pred CccCCCCCCHHHHHHHHHH-HHHH-------cCCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHH
Confidence 5789999999999866544 4332 35679999999999999999988764 5778888988776544 3
Q ss_pred HHHhc-CCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCC-----Ch-HHHHHHHhhcCCCceEEEEeccCcH
Q 003881 343 KELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG-----FE-PQIRSIVGQIRPDRQTLLFSATMPR 415 (789)
Q Consensus 343 ~~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~-----f~-~~i~~il~~l~~~~q~ll~SAT~~~ 415 (789)
..+.. .++|||+|+..|. ..+.++.+|||||+|...-+. |. ..+ .++.....+.++|++|||+..
T Consensus 70 ~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~-a~~ra~~~~~~vil~SATPsl 141 (505)
T TIGR00595 70 RKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDV-AVYRAKKFNCPVVLGSATPSL 141 (505)
T ss_pred HHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHH-HHHHHHhcCCCEEEEeCCCCH
Confidence 33333 4799999998763 357789999999999765322 11 112 222333457899999999765
Q ss_pred HHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCc---ccHHHHHHhcCCCCC-CCCEEEEeccccc---------
Q 003881 416 KVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDA---EKLPWLLEKLPGMID-DGDVLVFASKKTT--------- 482 (789)
Q Consensus 416 ~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~---~k~~~L~~~L~~~~~-~~kvLVF~~s~~~--------- 482 (789)
+....+ ..+....+...............+..+.... .-...|++.+.+.+. +.++|||+|++..
T Consensus 142 es~~~~--~~g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~C 219 (505)
T TIGR00595 142 ESYHNA--KQKAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSC 219 (505)
T ss_pred HHHHHH--hcCCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhC
Confidence 433322 2122222222111111111111111111111 111345555544443 4589999887543
Q ss_pred ---------------------------------------------------HHHHHHHHHHc--CCceeeccCCCCHHHH
Q 003881 483 ---------------------------------------------------VDEIESQLAQK--GFKAAALHGDKDQASR 509 (789)
Q Consensus 483 ---------------------------------------------------a~~l~~~L~~~--g~~v~~lhg~~~~~eR 509 (789)
.+.+++.|.+. +.++..+|+++++..+
T Consensus 220 g~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~ 299 (505)
T TIGR00595 220 GYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKG 299 (505)
T ss_pred cCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCcc
Confidence 47888888876 7889999999987766
Q ss_pred --HHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEcCCC------------CHHHHHHHHhhcCCCCCCCcEEEEEE
Q 003881 510 --MEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIAR------------DMDMHVHRIGRTGRAGDKDGTAYTLV 575 (789)
Q Consensus 510 --~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~------------s~~~yiQriGR~gR~G~k~G~~i~lv 575 (789)
+.+++.|++|+.+|||+|+++++|+|+|+|++|+.+|... ....|+|++||+||.+ +.|.+++..
T Consensus 300 ~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~-~~g~viiqt 378 (505)
T TIGR00595 300 AHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAE-DPGQVIIQT 378 (505)
T ss_pred HHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCC-CCCEEEEEe
Confidence 8999999999999999999999999999999986544432 2467899999999988 679888655
Q ss_pred cccc
Q 003881 576 TQKE 579 (789)
Q Consensus 576 ~~~d 579 (789)
...+
T Consensus 379 ~~p~ 382 (505)
T TIGR00595 379 YNPN 382 (505)
T ss_pred CCCC
Confidence 4333
No 94
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=6.8e-27 Score=272.14 Aligned_cols=181 Identities=18% Similarity=0.288 Sum_probs=144.4
Q ss_pred ChhhcCCCHHHHHHHHHHcCceec-cCCCCCCCCCcccCCCCHHHHHHHH-----HcCCCCC---cHHHHHHHHHHHcCC
Q 003881 193 SASISGMSEQDVMEYKKSLAIRVS-GFDVPRPVKTFEDCGFSTQLMHAIS-----KQGYEKP---TSIQCQALPIILSGR 263 (789)
Q Consensus 193 ~~~i~~~s~~~~~~~r~~~~i~v~-~~~~P~pi~sf~~~~l~~~l~~~l~-----~~g~~~p---tpiQ~~~i~~il~gr 263 (789)
.+.+..|+.++.......+...+. +..+-. + -.+.+.+...+...+. ..||..| ||+|.|+++.++.++
T Consensus 31 e~~~~~lsd~eL~~kt~~~k~~l~~~~~ld~-~-l~eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~ 108 (970)
T PRK12899 31 DEKFSSLSDDELRNKTAELKQRYQDGESLDK-L-LPEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHK 108 (970)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHcCCchHH-H-HHHHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCC
Confidence 345777888766654443322221 211111 0 1345678888887776 6789998 999999999999999
Q ss_pred CEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHH
Q 003881 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK 343 (789)
Q Consensus 264 dvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~ 343 (789)
++|+.++||+|||++|++|++.+++.. ..++||+||++||.|+.+++..+...+++++.+++||.+...+..
T Consensus 109 gvIAeaqTGeGKTLAf~LP~l~~aL~g--------~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~ 180 (970)
T PRK12899 109 GFITEMQTGEGKTLTAVMPLYLNALTG--------KPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKE 180 (970)
T ss_pred CeEEEeCCCCChHHHHHHHHHHHHhhc--------CCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH
Confidence 999999999999999999999887642 238999999999999999999999999999999999999888765
Q ss_pred HHhcCCcEEEeChHHH-HHHHhhcccccC-------ceeEEEEeccchhc
Q 003881 344 ELKAGCEIVIATPGRL-IDMLKMKALTMS-------RVTYLVLDEADRMF 385 (789)
Q Consensus 344 ~l~~~~dIiV~Tp~~L-~~~l~~~~~~l~-------~i~~lVvDEah~m~ 385 (789)
.+ .+||+|+||++| +++++.+.+.++ .+.++||||||.|+
T Consensus 181 ~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 181 IY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred Hc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhh
Confidence 54 599999999999 999987755555 45899999999875
No 95
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=7e-27 Score=270.31 Aligned_cols=344 Identities=20% Similarity=0.243 Sum_probs=250.0
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC-CCEEEEccCCChhhHHHHHHHHHHHhcCccccc---cCCCeEEEEcCc
Q 003881 232 FSTQLMHAISKQGYEKPTSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQK---EEGPIGVICAPT 307 (789)
Q Consensus 232 l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~g-rdvll~a~TGsGKTla~llpil~~l~~~~~~~~---~~gp~vLIl~Pt 307 (789)
+|.+-..++. |+..+.++|....+..+.+ .++++|||||+|||..+++-+|+.+-....... -...++++++|.
T Consensus 296 lP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPm 373 (1674)
T KOG0951|consen 296 LPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPM 373 (1674)
T ss_pred Ccchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeH
Confidence 4444444443 5577999999999999877 689999999999999999999998865433211 123478999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcc---cccCceeEEEEeccchh
Q 003881 308 RELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKA---LTMSRVTYLVLDEADRM 384 (789)
Q Consensus 308 reLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~---~~l~~i~~lVvDEah~m 384 (789)
.+|++.|...+.+.+..++++|.-.+|......+- ..+..||||||+..- .+.++. ...+-+.++|+||.|.+
T Consensus 374 KaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~D-iITRk~gdraY~qlvrLlIIDEIHLL 449 (1674)
T KOG0951|consen 374 KALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKWD-IITRKSGDRAYEQLVRLLIIDEIHLL 449 (1674)
T ss_pred HHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchhh-hhhcccCchhHHHHHHHHhhhhhhhc
Confidence 99999999999999999999999999986643221 234889999999974 444432 22345788999999976
Q ss_pred ccCCChHHHHHHHhhcC-------CCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCc-c-
Q 003881 385 FDLGFEPQIRSIVGQIR-------PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDA-E- 455 (789)
Q Consensus 385 ~~~~f~~~i~~il~~l~-------~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~-~- 455 (789)
-| ..++.+..|..+.. ...+++++|||+|+- ++.+.-+..++.-+........+..+.|.+.-+.... .
T Consensus 450 hD-dRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy-~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~ 527 (1674)
T KOG0951|consen 450 HD-DRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNY-EDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLK 527 (1674)
T ss_pred cc-ccchHHHHHHHHHHHHhhhcccCceeeeecccCCch-hhhHHHhccCcccccccCcccCcCCccceEeccccCCchH
Confidence 44 35677766665442 357899999999964 5555555555544444344445556666665554321 1
Q ss_pred cH----HHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHc-------------------------------------C
Q 003881 456 KL----PWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK-------------------------------------G 494 (789)
Q Consensus 456 k~----~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~-------------------------------------g 494 (789)
++ ...++.+-+....++||||+.++++.-+.++.++.. .
T Consensus 528 ~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLp 607 (1674)
T KOG0951|consen 528 RFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLP 607 (1674)
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhh
Confidence 11 123333333445589999999999887777777631 4
Q ss_pred CceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEE----EEcCC------CCHHHHHHHHhhcCCC
Q 003881 495 FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVV----NFDIA------RDMDMHVHRIGRTGRA 564 (789)
Q Consensus 495 ~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI----~~d~p------~s~~~yiQriGR~gR~ 564 (789)
+.++++|.+|+..+|..+.+.|+.|.++|||+|-.+++|+|+|.-+++| .||+- .++.+.+||+||+||.
T Consensus 608 ygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp 687 (1674)
T KOG0951|consen 608 YGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRP 687 (1674)
T ss_pred ccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCC
Confidence 5689999999999999999999999999999999999999999766555 36653 3799999999999999
Q ss_pred C-CCCcEEEEEEccccHHHH
Q 003881 565 G-DKDGTAYTLVTQKEARFA 583 (789)
Q Consensus 565 G-~k~G~~i~lv~~~d~~~~ 583 (789)
+ +..|..++.....+..+.
T Consensus 688 ~~D~~gegiiit~~se~qyy 707 (1674)
T KOG0951|consen 688 QYDTCGEGIIITDHSELQYY 707 (1674)
T ss_pred ccCcCCceeeccCchHhhhh
Confidence 8 444566655554444433
No 96
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=3.3e-26 Score=259.37 Aligned_cols=310 Identities=20% Similarity=0.206 Sum_probs=236.2
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003881 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (789)
Q Consensus 247 ~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~ 326 (789)
.|-.+|++||-++..|..+++.|.|.+|||+++-.++...- .++.++++..|-++|.+|-++.++.-+...|
T Consensus 297 elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq--------~h~TR~iYTSPIKALSNQKfRDFk~tF~Dvg 368 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ--------KHMTRTIYTSPIKALSNQKFRDFKETFGDVG 368 (1248)
T ss_pred CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH--------hhccceEecchhhhhccchHHHHHHhccccc
Confidence 68899999999999999999999999999998776654332 4577899999999999999999887765333
Q ss_pred CeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcCCCceE
Q 003881 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 406 (789)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ 406 (789)
+++|...... .+.++|+|.+.|..++.+...-++++++|||||+|.+-|...+..++.++-.+|++.++
T Consensus 369 ----LlTGDvqinP-------eAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~ 437 (1248)
T KOG0947|consen 369 ----LLTGDVQINP-------EASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNF 437 (1248)
T ss_pred ----eeecceeeCC-------CcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccceE
Confidence 6777765433 47899999999999999988889999999999999999988888899999999999999
Q ss_pred EEEeccCcHHHHHHHHHHhCC-CeEEeeccccCcccceeEEEEecC----------------------------------
Q 003881 407 LLFSATMPRKVEKLAREILSD-PVRVTVGEVGMANEDITQVVHVIP---------------------------------- 451 (789)
Q Consensus 407 ll~SAT~~~~i~~l~~~~l~~-p~~i~i~~~~~~~~~i~q~~~~~~---------------------------------- 451 (789)
|++|||.|+.. +++.|+..- -..|++.........+.+.+..-.
T Consensus 438 IlLSATVPN~~-EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~ 516 (1248)
T KOG0947|consen 438 ILLSATVPNTL-EFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVE 516 (1248)
T ss_pred EEEeccCCChH-HHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccc
Confidence 99999999774 577776432 112222221111111111111000
Q ss_pred ------------------------------CCcc---cHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcC----
Q 003881 452 ------------------------------SDAE---KLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKG---- 494 (789)
Q Consensus 452 ------------------------------~~~~---k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g---- 494 (789)
.... .+..|+..|.+. .--++||||-++..|+..+++|....
T Consensus 517 ~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~-~lLP~VvFvFSkkrCde~a~~L~~~nL~~~ 595 (1248)
T KOG0947|consen 517 KSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKK-NLLPVVVFVFSKKRCDEYADYLTNLNLTDS 595 (1248)
T ss_pred cccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhc-ccCceEEEEEccccHHHHHHHHhccCcccc
Confidence 0001 122334444331 22389999999999999999996531
Q ss_pred -----------------------------------CceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCc
Q 003881 495 -----------------------------------FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSI 539 (789)
Q Consensus 495 -----------------------------------~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v 539 (789)
-.++++||++-+--++-+.-.|..|-++||+||..+++|+|.|.-
T Consensus 596 ~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPAR 675 (1248)
T KOG0947|consen 596 KEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPAR 675 (1248)
T ss_pred hhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCce
Confidence 137899999999999999999999999999999999999999965
Q ss_pred cEEEEEcCC---------CCHHHHHHHHhhcCCCC-CCCcEEEEEEccc
Q 003881 540 KSVVNFDIA---------RDMDMHVHRIGRTGRAG-DKDGTAYTLVTQK 578 (789)
Q Consensus 540 ~~VI~~d~p---------~s~~~yiQriGR~gR~G-~k~G~~i~lv~~~ 578 (789)
.+|+ -.+. -.|-+|+|+.||+||.| +.+|+++++....
T Consensus 676 tvVF-~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 676 TVVF-SSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred eEEe-eehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 5444 3322 25889999999999999 7789988877654
No 97
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=2.6e-26 Score=267.98 Aligned_cols=317 Identities=20% Similarity=0.214 Sum_probs=231.5
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003881 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~ 325 (789)
..|+++|.-+.-.+.+| -|+.++||+|||+++++|++...+. |..+-||+||..||.|.++++..+...+
T Consensus 80 ~~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~IvTpn~yLA~rd~e~~~~l~~~L 149 (830)
T PRK12904 80 MRHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNALT--------GKGVHVVTVNDYLAKRDAEWMGPLYEFL 149 (830)
T ss_pred CCCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHHc--------CCCEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 36778887777666665 4899999999999999999644332 3347799999999999999999999999
Q ss_pred CCeEEEEECCCChHHHHHHHhcCCcEEEeChHHH-HHHHhhcc------cccCceeEEEEeccchhcc-C----------
Q 003881 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMKA------LTMSRVTYLVLDEADRMFD-L---------- 387 (789)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L-~~~l~~~~------~~l~~i~~lVvDEah~m~~-~---------- 387 (789)
|+++.+++|+.+..++...+ .++|+++||++| .++++.+. ..+..+.++||||||.|+- .
T Consensus 150 Glsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~ 227 (830)
T PRK12904 150 GLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGP 227 (830)
T ss_pred CCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECC
Confidence 99999999998887665543 499999999999 88887553 3467899999999998731 0
Q ss_pred -----CChHHHHHHHhhcCCC-----------------------------------------------------------
Q 003881 388 -----GFEPQIRSIVGQIRPD----------------------------------------------------------- 403 (789)
Q Consensus 388 -----~f~~~i~~il~~l~~~----------------------------------------------------------- 403 (789)
.+...+..+...+..+
T Consensus 228 ~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dY 307 (830)
T PRK12904 228 AEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDY 307 (830)
T ss_pred CCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcE
Confidence 0111112222222110
Q ss_pred ----------------------------------------------------------ceEEEEeccCcHHHHHHHHHHh
Q 003881 404 ----------------------------------------------------------RQTLLFSATMPRKVEKLAREIL 425 (789)
Q Consensus 404 ----------------------------------------------------------~q~ll~SAT~~~~i~~l~~~~l 425 (789)
.++.+||.|......++...|
T Consensus 308 iV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY- 386 (830)
T PRK12904 308 IVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIY- 386 (830)
T ss_pred EEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHh-
Confidence 134445555443332222222
Q ss_pred CCCeEEeeccccCcccceeEEEEecCCCcccHHHHHHhcCCCC-CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCC
Q 003881 426 SDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDK 504 (789)
Q Consensus 426 ~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~ 504 (789)
+-.+.......+....+ ..-.+......|+..+.+.+.+.. ...+|||||+++..++.|+..|.+.++++..||+.
T Consensus 387 ~l~vv~IPtnkp~~r~d--~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak- 463 (830)
T PRK12904 387 NLDVVVIPTNRPMIRID--HPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK- 463 (830)
T ss_pred CCCEEEcCCCCCeeeee--CCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc-
Confidence 22221111111111111 111222345678888888875532 34599999999999999999999999999999995
Q ss_pred CHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCc--------------------------------------cEEEEEc
Q 003881 505 DQASRMEILQKFKSGVYHVLIATDVAARGLDIKSI--------------------------------------KSVVNFD 546 (789)
Q Consensus 505 ~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v--------------------------------------~~VI~~d 546 (789)
+.+|+..+..|+.+...|+|||++|+||+||+-- -|||-..
T Consensus 464 -q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTe 542 (830)
T PRK12904 464 -NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTE 542 (830)
T ss_pred -hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecc
Confidence 8899999999999999999999999999999742 3788888
Q ss_pred CCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccH
Q 003881 547 IARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (789)
Q Consensus 547 ~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~ 580 (789)
.+.|.---.|-.||+||.| .+|.+..|++-+|.
T Consensus 543 rhesrRid~QlrGRagRQG-dpGss~f~lSleD~ 575 (830)
T PRK12904 543 RHESRRIDNQLRGRSGRQG-DPGSSRFYLSLEDD 575 (830)
T ss_pred cCchHHHHHHhhcccccCC-CCCceeEEEEcCcH
Confidence 8999999999999999999 68999999988765
No 98
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.95 E-value=1.3e-26 Score=246.41 Aligned_cols=362 Identities=19% Similarity=0.249 Sum_probs=244.7
Q ss_pred cccCccccccccCChhhcCCCHHHHHHHHHHcCceeccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHH
Q 003881 180 IDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPII 259 (789)
Q Consensus 180 ~~~~~f~k~fy~~~~~i~~~s~~~~~~~r~~~~i~v~~~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~i 259 (789)
+.|+.-.-..|..++++..+ |..+.+...+.+.....|..+. ..+.|+|.+.+.|+
T Consensus 141 ~p~er~~~rl~eh~pE~~~v----~~dlde~~p~i~e~aeqP~dli--------------------i~LL~fQkE~l~Wl 196 (791)
T KOG1002|consen 141 TPYERNTLRLYEHHPELRNV----FTDLDEANPVIAERAEQPDDLI--------------------IPLLPFQKEGLAWL 196 (791)
T ss_pred CccchhhhhhhhcCchhhhh----hhhhhhcCchhhhcccCcccce--------------------ecchhhhHHHHHHH
Confidence 34454455567788877655 7777777777777666676554 56789999999999
Q ss_pred HcC-----CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEEC
Q 003881 260 LSG-----RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYG 334 (789)
Q Consensus 260 l~g-----rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~g 334 (789)
..+ ...|++.++|+|||++.+..+|+.+ .+...|||||+.+|. ||.+++.++.. +-.-+++|.
T Consensus 197 ~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~---------~ra~tLVvaP~VAlm-QW~nEI~~~T~--gslkv~~Yh 264 (791)
T KOG1002|consen 197 TSQEESSVAGGILADEMGMGKTIQTIALLLAEV---------DRAPTLVVAPTVALM-QWKNEIERHTS--GSLKVYIYH 264 (791)
T ss_pred HHhhhhhhccceehhhhccchHHHHHHHHHhcc---------ccCCeeEEccHHHHH-HHHHHHHHhcc--CceEEEEEe
Confidence 865 4579999999999999766666533 233389999998887 89999999987 555566777
Q ss_pred CCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccc-------------cCc--eeEEEEeccchhccCCC----------
Q 003881 335 GMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALT-------------MSR--VTYLVLDEADRMFDLGF---------- 389 (789)
Q Consensus 335 g~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~-------------l~~--i~~lVvDEah~m~~~~f---------- 389 (789)
|......++++. ++|+|++|+..+....++.... |++ |..||+||||.|.+..-
T Consensus 265 G~~R~~nikel~-~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~ 343 (791)
T KOG1002|consen 265 GAKRDKNIKELM-NYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALE 343 (791)
T ss_pred cccccCCHHHhh-cCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccccccccHHHHHHhhH
Confidence 777777777765 4999999999998877653222 333 55699999998854210
Q ss_pred ---------------hHHHHHHHhhcCC---------------------------------CceEEEEeccCcHHHHHH-
Q 003881 390 ---------------EPQIRSIVGQIRP---------------------------------DRQTLLFSATMPRKVEKL- 420 (789)
Q Consensus 390 ---------------~~~i~~il~~l~~---------------------------------~~q~ll~SAT~~~~i~~l- 420 (789)
...+..+++.++- ..++++|.+.++..++.+
T Consensus 344 tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG 423 (791)
T KOG1002|consen 344 TTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFG 423 (791)
T ss_pred hhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeecccccCCcccchhhhhhhhhcccccccchhhc
Confidence 0111222221110 023344444432221111
Q ss_pred --------------------------------------------------------------------------------
Q 003881 421 -------------------------------------------------------------------------------- 420 (789)
Q Consensus 421 -------------------------------------------------------------------------------- 420 (789)
T Consensus 424 ~eGpGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAn 503 (791)
T KOG1002|consen 424 VEGPGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYAN 503 (791)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHH
Confidence
Q ss_pred -------HHHHhCCCeEEeecc-ccCcccce------------------------------------------eEEEEec
Q 003881 421 -------AREILSDPVRVTVGE-VGMANEDI------------------------------------------TQVVHVI 450 (789)
Q Consensus 421 -------~~~~l~~p~~i~i~~-~~~~~~~i------------------------------------------~q~~~~~ 450 (789)
++....+|..+.... ......+. ..-...+
T Consensus 504 IF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i 583 (791)
T KOG1002|consen 504 IFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHI 583 (791)
T ss_pred HHHHHHHHHHhccCcceeeehhhcCCCccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccc
Confidence 111112233322210 00000000 0000000
Q ss_pred C--------------------------------CCcccHHHHHHhcCCCCCCC---CEEEEecccccHHHHHHHHHHcCC
Q 003881 451 P--------------------------------SDAEKLPWLLEKLPGMIDDG---DVLVFASKKTTVDEIESQLAQKGF 495 (789)
Q Consensus 451 ~--------------------------------~~~~k~~~L~~~L~~~~~~~---kvLVF~~s~~~a~~l~~~L~~~g~ 495 (789)
. ....|+..|.+.|..+.... +.|||.+....++.+...|.+.|+
T Consensus 584 ~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGf 663 (791)
T KOG1002|consen 584 GLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGF 663 (791)
T ss_pred cccccccchhhhhcchhhhhhHHHhhhcchhhhcchhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCc
Confidence 0 12356666766665443333 789999999999999999999999
Q ss_pred ceeeccCCCCHHHHHHHHHHhhcC-Ccc-eEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEE-E
Q 003881 496 KAAALHGDKDQASRMEILQKFKSG-VYH-VLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTA-Y 572 (789)
Q Consensus 496 ~v~~lhg~~~~~eR~~~l~~F~~G-~~~-VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~-i 572 (789)
.|+.|.|+|++..|..+++.|++. .+. +||+-.+++..||+..+.+|+++|++||+..-.|...|++|+|+...+- +
T Consensus 664 scVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvv 743 (791)
T KOG1002|consen 664 SCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVV 743 (791)
T ss_pred eEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEE
Confidence 999999999999999999999886 444 5777899999999999999999999999999999999999999765554 4
Q ss_pred EEEccc
Q 003881 573 TLVTQK 578 (789)
Q Consensus 573 ~lv~~~ 578 (789)
.|+..+
T Consensus 744 rf~iEn 749 (791)
T KOG1002|consen 744 RFCIEN 749 (791)
T ss_pred Eeehhc
Confidence 455443
No 99
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=5.5e-26 Score=264.32 Aligned_cols=315 Identities=22% Similarity=0.288 Sum_probs=224.6
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003881 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~ 325 (789)
..|++.|.-+.-.+.+|+ |....||+|||+++.+|++...+. |..|-||+||.-||.|-++++..++..+
T Consensus 79 ~~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~--------G~~v~vvT~neyLA~Rd~e~~~~~~~~L 148 (796)
T PRK12906 79 LRPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT--------GKGVHVVTVNEYLSSRDATEMGELYRWL 148 (796)
T ss_pred CCCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc--------CCCeEEEeccHHHHHhhHHHHHHHHHhc
Confidence 468888888877776665 899999999999999999887743 6668999999999999999999999999
Q ss_pred CCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHH-HHHhh------cccccCceeEEEEeccchhc-cCC---------
Q 003881 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLI-DMLKM------KALTMSRVTYLVLDEADRMF-DLG--------- 388 (789)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~-~~l~~------~~~~l~~i~~lVvDEah~m~-~~~--------- 388 (789)
|++|.++.++.+..+.. .. -.|||+.+|...|- ++|+. .......+.+.||||+|.|+ |..
T Consensus 149 Gl~vg~i~~~~~~~~r~-~~-y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~ 226 (796)
T PRK12906 149 GLTVGLNLNSMSPDEKR-AA-YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQ 226 (796)
T ss_pred CCeEEEeCCCCCHHHHH-HH-hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCC
Confidence 99999999877665432 22 25899999987763 33322 12234568899999999763 100
Q ss_pred ------ChHHHHHHHhhcCCC-----------------------------------------------------------
Q 003881 389 ------FEPQIRSIVGQIRPD----------------------------------------------------------- 403 (789)
Q Consensus 389 ------f~~~i~~il~~l~~~----------------------------------------------------------- 403 (789)
+...+..++..+...
T Consensus 227 ~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~ 306 (796)
T PRK12906 227 AEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALR 306 (796)
T ss_pred CCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHH
Confidence 111111222111110
Q ss_pred ---------------------------------------------------------------------ceEEEEeccCc
Q 003881 404 ---------------------------------------------------------------------RQTLLFSATMP 414 (789)
Q Consensus 404 ---------------------------------------------------------------------~q~ll~SAT~~ 414 (789)
.++.+||.|..
T Consensus 307 A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~ 386 (796)
T PRK12906 307 ANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAK 386 (796)
T ss_pred HHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCH
Confidence 12233333332
Q ss_pred HHHHHHHHHHhCCCeEEeeccccCcccceeE--EEEecCCCcccHHHHHHhcCCC-CCCCCEEEEecccccHHHHHHHHH
Q 003881 415 RKVEKLAREILSDPVRVTVGEVGMANEDITQ--VVHVIPSDAEKLPWLLEKLPGM-IDDGDVLVFASKKTTVDEIESQLA 491 (789)
Q Consensus 415 ~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q--~~~~~~~~~~k~~~L~~~L~~~-~~~~kvLVF~~s~~~a~~l~~~L~ 491 (789)
....++ ...++-++.... ...+.+.. .-.+......|+..+.+.+... ....++||||+++..++.|+..|.
T Consensus 387 ~e~~Ef-~~iY~l~vv~IP----tnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~ 461 (796)
T PRK12906 387 TEEEEF-REIYNMEVITIP----TNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLD 461 (796)
T ss_pred HHHHHH-HHHhCCCEEEcC----CCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHH
Confidence 221111 111111111111 11111110 0112223456777887777543 245699999999999999999999
Q ss_pred HcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCC---Ccc-----EEEEEcCCCCHHHHHHHHhhcCC
Q 003881 492 QKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIK---SIK-----SVVNFDIARDMDMHVHRIGRTGR 563 (789)
Q Consensus 492 ~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~---~v~-----~VI~~d~p~s~~~yiQriGR~gR 563 (789)
+.++++.+||+++.+.++..+...++.|. |+|||++++||+||+ +|. |||+++.|.+...|.|++||+||
T Consensus 462 ~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGR 539 (796)
T PRK12906 462 EAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGR 539 (796)
T ss_pred HCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhcc
Confidence 99999999999999888888888888776 999999999999995 889 99999999999999999999999
Q ss_pred CCCCCcEEEEEEccccH
Q 003881 564 AGDKDGTAYTLVTQKEA 580 (789)
Q Consensus 564 ~G~k~G~~i~lv~~~d~ 580 (789)
.| .+|.+.+|++.+|.
T Consensus 540 qG-~~G~s~~~~sleD~ 555 (796)
T PRK12906 540 QG-DPGSSRFYLSLEDD 555 (796)
T ss_pred CC-CCcceEEEEeccch
Confidence 99 68999999998865
No 100
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=2.3e-26 Score=254.84 Aligned_cols=310 Identities=21% Similarity=0.244 Sum_probs=236.5
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003881 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (789)
Q Consensus 247 ~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~ 326 (789)
.+-|+|.++|.++-++..+|+.|.|.+|||.++-.++...+ .+..+|++..|-++|.+|-++++..-++.
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sL--------r~kQRVIYTSPIKALSNQKYREl~~EF~D-- 198 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSL--------REKQRVIYTSPIKALSNQKYRELLEEFKD-- 198 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHH--------HhcCeEEeeChhhhhcchhHHHHHHHhcc--
Confidence 67899999999999999999999999999999888777666 34677999999999999999999877653
Q ss_pred CeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcCCCceE
Q 003881 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 406 (789)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ 406 (789)
|.+.+|...... .+..+|+|.+.|..++.++.--+..+.+||+||+|.|-|...+..+..-+-.++.+.+.
T Consensus 199 --VGLMTGDVTInP-------~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~ 269 (1041)
T KOG0948|consen 199 --VGLMTGDVTINP-------DASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRF 269 (1041)
T ss_pred --cceeecceeeCC-------CCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceE
Confidence 345566655433 37799999999999999888889999999999999999988777777777888999999
Q ss_pred EEEeccCcHHHHHHHHHHhC---CCeEEeeccccCcccceeEE---------EEecCCC----cccHHHHHHhcCCCC--
Q 003881 407 LLFSATMPRKVEKLAREILS---DPVRVTVGEVGMANEDITQV---------VHVIPSD----AEKLPWLLEKLPGMI-- 468 (789)
Q Consensus 407 ll~SAT~~~~i~~l~~~~l~---~p~~i~i~~~~~~~~~i~q~---------~~~~~~~----~~k~~~L~~~L~~~~-- 468 (789)
+++|||+|+. .+++.|++. .|..+...... +..+.+. +.+++.. .+.+......|....
T Consensus 270 VFLSATiPNA-~qFAeWI~~ihkQPcHVVYTdyR--PTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~ 346 (1041)
T KOG0948|consen 270 VFLSATIPNA-RQFAEWICHIHKQPCHVVYTDYR--PTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGES 346 (1041)
T ss_pred EEEeccCCCH-HHHHHHHHHHhcCCceEEeecCC--CCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCC
Confidence 9999999976 567777764 45544432221 1112221 1112110 112222222221110
Q ss_pred -----------------------------------CCCCEEEEecccccHHHHHHHHHHcC-------------------
Q 003881 469 -----------------------------------DDGDVLVFASKKTTVDEIESQLAQKG------------------- 494 (789)
Q Consensus 469 -----------------------------------~~~kvLVF~~s~~~a~~l~~~L~~~g------------------- 494 (789)
.-.+||||+-++++|+.++-.+.+..
T Consensus 347 ~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~ 426 (1041)
T KOG0948|consen 347 DGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAID 426 (1041)
T ss_pred ccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHH
Confidence 11379999999999999988876541
Q ss_pred --------------------CceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEE----EcC---
Q 003881 495 --------------------FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN----FDI--- 547 (789)
Q Consensus 495 --------------------~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~----~d~--- 547 (789)
-.++++|+++-+--++-+.-.|.+|-+++|.||...+.|||.|.-++|+- ||-
T Consensus 427 ~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~f 506 (1041)
T KOG0948|consen 427 QLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKF 506 (1041)
T ss_pred hcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcce
Confidence 23789999999999999999999999999999999999999996544441 221
Q ss_pred -CCCHHHHHHHHhhcCCCC-CCCcEEEEEEccc
Q 003881 548 -ARDMDMHVHRIGRTGRAG-DKDGTAYTLVTQK 578 (789)
Q Consensus 548 -p~s~~~yiQriGR~gR~G-~k~G~~i~lv~~~ 578 (789)
+-+--+|+|+.||+||.| +..|.||+++...
T Consensus 507 RwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 507 RWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred eeecccceEEecccccccCCCCCceEEEEecCc
Confidence 225678999999999999 6679999999764
No 101
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.94 E-value=1.2e-25 Score=241.59 Aligned_cols=344 Identities=21% Similarity=0.289 Sum_probs=247.2
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEccC-CChh--hHHHHHHHHHHHhcCccccccC-----------------------
Q 003881 244 GYEKPTSIQCQALPIILSGRDIIGIAKT-GSGK--TAAFVLPMIVHIMDQPELQKEE----------------------- 297 (789)
Q Consensus 244 g~~~ptpiQ~~~i~~il~grdvll~a~T-GsGK--Tla~llpil~~l~~~~~~~~~~----------------------- 297 (789)
.-..+|+.|.+.+..+.+++|++..-.| +.|+ +-.|+|++|+|+++.+.+..++
T Consensus 213 ~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 213 KSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred ccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 3456899999999999999999875433 3444 5679999999999865433221
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHhhhcCC---------eEEEEECC--------CChHHHHHHH---------------
Q 003881 298 GPIGVICAPTRELAHQIYLETKKFAKSHGI---------RVSAVYGG--------MSKLDQFKEL--------------- 345 (789)
Q Consensus 298 gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i---------~v~~~~gg--------~~~~~~~~~l--------------- 345 (789)
.|+||||||+|+-|..+.+.+..++...+- +..--|+| .++.+..+.+
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 489999999999999999999988543211 11111222 1111222222
Q ss_pred -------h---cCCcEEEeChHHHHHHHhh------cccccCceeEEEEeccchhccCCChHHHHHHHhhc---CC----
Q 003881 346 -------K---AGCEIVIATPGRLIDMLKM------KALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI---RP---- 402 (789)
Q Consensus 346 -------~---~~~dIiV~Tp~~L~~~l~~------~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l---~~---- 402 (789)
. ..+|||||+|-.|..++.. ....|++|.++|||.||.|+..+|+ .+..|+.++ |.
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwE-hl~~ifdHLn~~P~k~h~ 451 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWE-HLLHIFDHLNLQPSKQHD 451 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHH-HHHHHHHHhhcCcccccC
Confidence 1 2489999999999999963 2345899999999999977765544 444444443 32
Q ss_pred -----------------CceEEEEeccCcHHHHHHHHHHhCCCe-EEee------ccccCcccceeEEEEec------CC
Q 003881 403 -----------------DRQTLLFSATMPRKVEKLAREILSDPV-RVTV------GEVGMANEDITQVVHVI------PS 452 (789)
Q Consensus 403 -----------------~~q~ll~SAT~~~~i~~l~~~~l~~p~-~i~i------~~~~~~~~~i~q~~~~~------~~ 452 (789)
-+|+|+||+...+.+..+...+|.|.. .+.. +......-.+.|.+..+ ..
T Consensus 452 ~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~ 531 (698)
T KOG2340|consen 452 VDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIET 531 (698)
T ss_pred CChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccC
Confidence 169999999999999999999988742 1111 12222223333433222 12
Q ss_pred CcccHHHHHHhcC-CCCC--CCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehh
Q 003881 453 DAEKLPWLLEKLP-GMID--DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDV 529 (789)
Q Consensus 453 ~~~k~~~L~~~L~-~~~~--~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v 529 (789)
...++..+...+- .+.. ...+|||++++-+..+|.+++++..+.++.||.+.++..-.++...|-.|+..||+.|..
T Consensus 532 ~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER 611 (698)
T KOG2340|consen 532 PDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTER 611 (698)
T ss_pred chHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehh
Confidence 3456666655432 3222 347899999999999999999999999999999999999999999999999999999999
Q ss_pred hh--ccCCCCCccEEEEEcCCCCHHHHHHHH---hhcCCCCC---CCcEEEEEEccccHHHHHHHHH
Q 003881 530 AA--RGLDIKSIKSVVNFDIARDMDMHVHRI---GRTGRAGD---KDGTAYTLVTQKEARFAGELVN 588 (789)
Q Consensus 530 ~~--rGlDI~~v~~VI~~d~p~s~~~yiQri---GR~gR~G~---k~G~~i~lv~~~d~~~~~~lv~ 588 (789)
++ +..+|.+|+.||+|.+|.+|..|.-.+ +|+.-.|+ ..-.|.+|+++.|.--+..++-
T Consensus 612 ~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ivG 678 (698)
T KOG2340|consen 612 AHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIVG 678 (698)
T ss_pred hhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhhh
Confidence 88 899999999999999999999986544 55544441 1247888999988776666553
No 102
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.93 E-value=7.1e-25 Score=253.57 Aligned_cols=325 Identities=21% Similarity=0.288 Sum_probs=222.9
Q ss_pred CCCcHHHHHHHHHHH---cC-CCEEEEccCCChhhHHHHHHHHHHHhcCcccccc-CCCeEEEEcCcHHHHHHHHHHHHH
Q 003881 246 EKPTSIQCQALPIIL---SG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKE-EGPIGVICAPTRELAHQIYLETKK 320 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il---~g-rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~-~gp~vLIl~PtreLa~Qi~~~~~~ 320 (789)
.+++.||+++++|+. .+ -+.|+|..||.|||++.+-.+....++.+..... +..-.|||||. .|+--|..++.+
T Consensus 974 a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~k 1052 (1549)
T KOG0392|consen 974 AKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKK 1052 (1549)
T ss_pred HHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHH
Confidence 357889999999974 33 4899999999999999655554444443211111 22237999997 799999999999
Q ss_pred HhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhc
Q 003881 321 FAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI 400 (789)
Q Consensus 321 ~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l 400 (789)
|+.. +++..++|+...+...+.-.+.++|||++|+.+..-+. .+.-..|.|+|+||-|-|.+. ...+.+....+
T Consensus 1053 f~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d--~l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL 1126 (1549)
T KOG0392|consen 1053 FFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVD--YLIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQL 1126 (1549)
T ss_pred hcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHH--HHHhcccceEEecCcceecch--HHHHHHHHHHH
Confidence 9875 77777888766666666666678999999988865432 222346889999999988774 44555666666
Q ss_pred CCCceEEEEeccC-cHHHHHHHHHH---h---------------------------------------------------
Q 003881 401 RPDRQTLLFSATM-PRKVEKLAREI---L--------------------------------------------------- 425 (789)
Q Consensus 401 ~~~~q~ll~SAT~-~~~i~~l~~~~---l--------------------------------------------------- 425 (789)
+...+ +++|.|+ .+++.+|..-| |
T Consensus 1127 ~a~hR-LILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LR 1205 (1549)
T KOG0392|consen 1127 RANHR-LILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLR 1205 (1549)
T ss_pred hhcce-EEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHH
Confidence 55544 5567774 44444431111 0
Q ss_pred -------CC-CeEEe-----------------------------e--ccccCc--ccceeEEE-----------EecC--
Q 003881 426 -------SD-PVRVT-----------------------------V--GEVGMA--NEDITQVV-----------HVIP-- 451 (789)
Q Consensus 426 -------~~-p~~i~-----------------------------i--~~~~~~--~~~i~q~~-----------~~~~-- 451 (789)
.+ |-.|. + +..... ...|.|.. .+..
T Consensus 1206 RlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~ 1285 (1549)
T KOG0392|consen 1206 RLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPV 1285 (1549)
T ss_pred HHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCC
Confidence 00 00000 0 000000 00000000 0000
Q ss_pred ---------------------CCcccHHHHHHhcCCCC---------------CCCCEEEEecccccHHHHHHHHHHcC-
Q 003881 452 ---------------------SDAEKLPWLLEKLPGMI---------------DDGDVLVFASKKTTVDEIESQLAQKG- 494 (789)
Q Consensus 452 ---------------------~~~~k~~~L~~~L~~~~---------------~~~kvLVF~~s~~~a~~l~~~L~~~g- 494 (789)
....|+..|-++|..+- .+.++||||+-+..++.+.+-|.+..
T Consensus 1286 hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~m 1365 (1549)
T KOG0392|consen 1286 HPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYM 1365 (1549)
T ss_pred cchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhc
Confidence 12345555555554321 23589999999999999999997753
Q ss_pred --CceeeccCCCCHHHHHHHHHHhhcC-CcceEE-eehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCC-c
Q 003881 495 --FKAAALHGDKDQASRMEILQKFKSG-VYHVLI-ATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKD-G 569 (789)
Q Consensus 495 --~~v~~lhg~~~~~eR~~~l~~F~~G-~~~VLV-aT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~-G 569 (789)
+....|.|..++.+|.++.++|+++ .++||+ +|.|++-|||+.++++||+++-.|||..-+|.+.|++|.|+|+ -
T Consensus 1366 psVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvV 1445 (1549)
T KOG0392|consen 1366 PSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVV 1445 (1549)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceee
Confidence 4456899999999999999999998 677755 6799999999999999999999999999999999999999654 4
Q ss_pred EEEEEEccc
Q 003881 570 TAYTLVTQK 578 (789)
Q Consensus 570 ~~i~lv~~~ 578 (789)
.+|.||+..
T Consensus 1446 NVyRlItrG 1454 (1549)
T KOG0392|consen 1446 NVYRLITRG 1454 (1549)
T ss_pred eeeeehhcc
Confidence 478888875
No 103
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.93 E-value=4e-24 Score=261.76 Aligned_cols=303 Identities=18% Similarity=0.245 Sum_probs=198.3
Q ss_pred CCCcHHHHHHHHHHH----c-CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHH
Q 003881 246 EKPTSIQCQALPIIL----S-GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK 320 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il----~-grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~ 320 (789)
..|+++|.+||..+. . .+.+|++++||||||.++ +.++..+++. ....++|||+|+++|+.|+.+.+..
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~ta-i~li~~L~~~-----~~~~rVLfLvDR~~L~~Qa~~~F~~ 485 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTA-IALMYRLLKA-----KRFRRILFLVDRSALGEQAEDAFKD 485 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHH-HHHHHHHHhc-----CccCeEEEEecHHHHHHHHHHHHHh
Confidence 358999999998876 2 368999999999999873 4445555443 2346799999999999999999888
Q ss_pred HhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhc-----ccccCceeEEEEeccchhcc---------
Q 003881 321 FAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK-----ALTMSRVTYLVLDEADRMFD--------- 386 (789)
Q Consensus 321 ~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~-----~~~l~~i~~lVvDEah~m~~--------- 386 (789)
+..........+++....... .......|+|+|+..|...+... ...+..+++||+||||+-..
T Consensus 486 ~~~~~~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~ 563 (1123)
T PRK11448 486 TKIEGDQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGE 563 (1123)
T ss_pred cccccccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccch
Confidence 632211111112221100010 11234789999999998765321 23567899999999998531
Q ss_pred C------CChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeE---------------------Eeec--ccc
Q 003881 387 L------GFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVR---------------------VTVG--EVG 437 (789)
Q Consensus 387 ~------~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~---------------------i~i~--~~~ 437 (789)
. .+...++.++..+ +...|+||||+..... .+++.|+. +... ..+
T Consensus 564 ~~~~~~~~~~~~yr~iL~yF--dA~~IGLTATP~r~t~----~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~g 637 (1123)
T PRK11448 564 LQFRDQLDYVSKYRRVLDYF--DAVKIGLTATPALHTT----EIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEG 637 (1123)
T ss_pred hccchhhhHHHHHHHHHhhc--CccEEEEecCCccchh----HHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccc
Confidence 0 1235667777755 3567999999865432 22233321 1110 000
Q ss_pred Cc--cc----ceeE---EE--EecCC-------Ccc-------cH----HHHHHhcCCCCCCCCEEEEecccccHHHHHH
Q 003881 438 MA--NE----DITQ---VV--HVIPS-------DAE-------KL----PWLLEKLPGMIDDGDVLVFASKKTTVDEIES 488 (789)
Q Consensus 438 ~~--~~----~i~q---~~--~~~~~-------~~~-------k~----~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~ 488 (789)
.. .. .+.. .+ ..++. ... .. ..|.+.+... ..+++||||.++.+|+.+.+
T Consensus 638 i~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~-~~~KtiIF~~s~~HA~~i~~ 716 (1123)
T PRK11448 638 IHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPT-GEGKTLIFAATDAHADMVVR 716 (1123)
T ss_pred ccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhcc-CCCcEEEEEcCHHHHHHHHH
Confidence 00 00 0000 00 00000 000 00 1122223222 24799999999999999999
Q ss_pred HHHHc------C---CceeeccCCCCHHHHHHHHHHhhcCCc-ceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHH
Q 003881 489 QLAQK------G---FKAAALHGDKDQASRMEILQKFKSGVY-HVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRI 558 (789)
Q Consensus 489 ~L~~~------g---~~v~~lhg~~~~~eR~~~l~~F~~G~~-~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQri 558 (789)
.|.+. + ..+..+||+++ ++..+++.|+++.. +|||+++++.+|+|+|.|.+||+++++.|...|+|++
T Consensus 717 ~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmI 794 (1123)
T PRK11448 717 LLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQML 794 (1123)
T ss_pred HHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHH
Confidence 88753 2 24567999886 46789999999887 5899999999999999999999999999999999999
Q ss_pred hhcCCCC
Q 003881 559 GRTGRAG 565 (789)
Q Consensus 559 GR~gR~G 565 (789)
||+.|..
T Consensus 795 GRgtR~~ 801 (1123)
T PRK11448 795 GRATRLC 801 (1123)
T ss_pred hhhccCC
Confidence 9999975
No 104
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.93 E-value=1.1e-24 Score=249.26 Aligned_cols=344 Identities=21% Similarity=0.257 Sum_probs=248.7
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHH--HHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcH
Q 003881 231 GFSTQLMHAISKQGYEKPTSIQCQAL--PIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTR 308 (789)
Q Consensus 231 ~l~~~l~~~l~~~g~~~ptpiQ~~~i--~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~Ptr 308 (789)
+++....-..+..|..+++.+|.+|+ +.++.++|+|+.+||+.|||+++.+-|+..++.. ...++.+.|..
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~-------rr~~llilp~v 279 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR-------RRNVLLILPYV 279 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH-------hhceeEeccee
Confidence 33344444556678999999999998 6688999999999999999999999999887654 34489999999
Q ss_pred HHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhh--cccccCceeEEEEeccchhcc
Q 003881 309 ELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM--KALTMSRVTYLVLDEADRMFD 386 (789)
Q Consensus 309 eLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~--~~~~l~~i~~lVvDEah~m~~ 386 (789)
..++.-...+..+....|+.+.+++|..+.... .+.-+|.|||-++-..++.. ..-.+..+.+|||||.|.+.+
T Consensus 280 siv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d 355 (1008)
T KOG0950|consen 280 SIVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGD 355 (1008)
T ss_pred ehhHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeec
Confidence 999988899999999999999998877665433 23478999999887766644 233467889999999999999
Q ss_pred CCChHHHHHHHhhc-----CCCceEEEEeccCcHHHHHHHHHHhCCCeEEee-ccccCc-----ccceeEE-----EEec
Q 003881 387 LGFEPQIRSIVGQI-----RPDRQTLLFSATMPRKVEKLAREILSDPVRVTV-GEVGMA-----NEDITQV-----VHVI 450 (789)
Q Consensus 387 ~~f~~~i~~il~~l-----~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i-~~~~~~-----~~~i~q~-----~~~~ 450 (789)
.+....++.++..+ ....|+|+||||+|+. . ++..++..-+...- ...... ...+.+. +..+
T Consensus 356 ~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~-~-lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~i 433 (1008)
T KOG0950|consen 356 KGRGAILELLLAKILYENLETSVQIIGMSATIPNN-S-LLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREI 433 (1008)
T ss_pred cccchHHHHHHHHHHHhccccceeEeeeecccCCh-H-HHHHHhhhhheecccCcccchhccCCCcccccchhhHHHHHh
Confidence 99888888777655 2346899999999864 2 33333332111110 000000 0000000 0000
Q ss_pred C-------CCcccHHHHHHhcCCCCCCC-CEEEEecccccHHHHHHHHHHc-----------------------------
Q 003881 451 P-------SDAEKLPWLLEKLPGMIDDG-DVLVFASKKTTVDEIESQLAQK----------------------------- 493 (789)
Q Consensus 451 ~-------~~~~k~~~L~~~L~~~~~~~-kvLVF~~s~~~a~~l~~~L~~~----------------------------- 493 (789)
. .+.+ -+.++.+..+...++ .+||||+++..|+.++..+...
T Consensus 434 a~l~~~~~g~~d-pD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ 512 (1008)
T KOG0950|consen 434 ANLYSSNLGDED-PDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGI 512 (1008)
T ss_pred hhhhhhhcccCC-CcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcc
Confidence 0 0000 022233333333344 5999999999999888665431
Q ss_pred ---------CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEc----CCCCHHHHHHHHhh
Q 003881 494 ---------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFD----IARDMDMHVHRIGR 560 (789)
Q Consensus 494 ---------g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d----~p~s~~~yiQriGR 560 (789)
.+.+..+|.+++..+|+.+...|++|.+.||+||+.++.|+|+|..+++|-.- ...+...|.|++||
T Consensus 513 ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GR 592 (1008)
T KOG0950|consen 513 LDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGR 592 (1008)
T ss_pred cchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhh
Confidence 24588999999999999999999999999999999999999999877777432 23467899999999
Q ss_pred cCCCC-CCCcEEEEEEccccHHHHHHHHH
Q 003881 561 TGRAG-DKDGTAYTLVTQKEARFAGELVN 588 (789)
Q Consensus 561 ~gR~G-~k~G~~i~lv~~~d~~~~~~lv~ 588 (789)
|||+| ...|.+++++.+.+.+...+++.
T Consensus 593 AGR~gidT~GdsiLI~k~~e~~~~~~lv~ 621 (1008)
T KOG0950|consen 593 AGRTGIDTLGDSILIIKSSEKKRVRELVN 621 (1008)
T ss_pred hhhcccccCcceEEEeeccchhHHHHHHh
Confidence 99999 55799999999988876655543
No 105
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=2.4e-24 Score=250.86 Aligned_cols=316 Identities=17% Similarity=0.227 Sum_probs=221.6
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003881 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (789)
Q Consensus 247 ~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~ 326 (789)
.|+++|.-+--.+ .+.-|+.++||.|||++|++|++.+++. +..|.||+|++.||.|..+++..+...+|
T Consensus 82 ~~ydVQliGgl~L--~~G~IaEm~TGEGKTL~a~lp~~l~al~--------g~~VhIvT~ndyLA~RD~e~m~~l~~~lG 151 (908)
T PRK13107 82 RHFDVQLLGGMVL--DSNRIAEMRTGEGKTLTATLPAYLNALT--------GKGVHVITVNDYLARRDAENNRPLFEFLG 151 (908)
T ss_pred CcCchHHhcchHh--cCCccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEeCCHHHHHHHHHHHHHHHHhcC
Confidence 4666666554444 4456899999999999999999987754 44499999999999999999999999999
Q ss_pred CeEEEEECCCChHHHHHHHhcCCcEEEeChHHH-HHHHhhc-ccc-----cCceeEEEEeccchhccCC-----------
Q 003881 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMK-ALT-----MSRVTYLVLDEADRMFDLG----------- 388 (789)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L-~~~l~~~-~~~-----l~~i~~lVvDEah~m~~~~----------- 388 (789)
++|.+++++.+...... .-.+||+++||+.| +++|..+ .+. ...+.++||||||.|+...
T Consensus 152 lsv~~i~~~~~~~~r~~--~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~ 229 (908)
T PRK13107 152 LTVGINVAGLGQQEKKA--AYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAA 229 (908)
T ss_pred CeEEEecCCCCHHHHHh--cCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCC
Confidence 99999999887643211 22699999999999 8888765 333 3778999999999774310
Q ss_pred -----ChHHHHHHHhhcC-------------------CCceEEEEe----------------------------------
Q 003881 389 -----FEPQIRSIVGQIR-------------------PDRQTLLFS---------------------------------- 410 (789)
Q Consensus 389 -----f~~~i~~il~~l~-------------------~~~q~ll~S---------------------------------- 410 (789)
+...+..++..+. ...+.+.+|
T Consensus 230 ~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~ 309 (908)
T PRK13107 230 EDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHH 309 (908)
T ss_pred ccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHH
Confidence 1111111111111 011122222
Q ss_pred --------------------------------------------------------------------------------
Q 003881 411 -------------------------------------------------------------------------------- 410 (789)
Q Consensus 411 -------------------------------------------------------------------------------- 410 (789)
T Consensus 310 i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~G 389 (908)
T PRK13107 310 VNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAG 389 (908)
T ss_pred HHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhc
Confidence
Q ss_pred --ccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHHHHHhcCCCCC-CCCEEEEecccccHHHHH
Q 003881 411 --ATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMID-DGDVLVFASKKTTVDEIE 487 (789)
Q Consensus 411 --AT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~-~~kvLVF~~s~~~a~~l~ 487 (789)
.|......++..- ++-.+.......+....+. .-.+......|+..+++.+..... +.+|||||.++..++.|+
T Consensus 390 MTGTa~te~~Ef~~i-Y~l~Vv~IPTnkp~~R~d~--~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls 466 (908)
T PRK13107 390 MTGTADTEAFEFQHI-YGLDTVVVPTNRPMVRKDM--ADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLA 466 (908)
T ss_pred ccCCChHHHHHHHHH-hCCCEEECCCCCCccceeC--CCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHH
Confidence 1111111111100 0101100000000000000 001222345677777777665433 458999999999999999
Q ss_pred HHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCC------------------------------
Q 003881 488 SQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIK------------------------------ 537 (789)
Q Consensus 488 ~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~------------------------------ 537 (789)
..|...++++..||+.+.+.++..+...|+.|. |+|||++++||+||.
T Consensus 467 ~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (908)
T PRK13107 467 RLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIR 544 (908)
T ss_pred HHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhh
Confidence 999999999999999999999999999999998 999999999999997
Q ss_pred -------CccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccH
Q 003881 538 -------SIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (789)
Q Consensus 538 -------~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~ 580 (789)
+--+||-...+.|.---.|-.||+||.| .+|.+..|++-+|.
T Consensus 545 ~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQG-DPGss~f~lSlED~ 593 (908)
T PRK13107 545 HDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQG-DAGSSRFYLSMEDS 593 (908)
T ss_pred HHHHHHcCCCEEEecccCchHHHHhhhhcccccCC-CCCceeEEEEeCcH
Confidence 2347888888888888899999999999 68999999988775
No 106
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.92 E-value=5.3e-24 Score=251.36 Aligned_cols=310 Identities=21% Similarity=0.246 Sum_probs=232.0
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003881 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (789)
Q Consensus 247 ~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~ 326 (789)
.|-++|++++.+|..+..+++||+||+|||++...++...+ .++.+++++.|.++|.+|.+.++........
T Consensus 119 ~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al--------~~~qrviYTsPIKALsNQKyrdl~~~fgdv~ 190 (1041)
T COG4581 119 ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALAL--------RDGQRVIYTSPIKALSNQKYRDLLAKFGDVA 190 (1041)
T ss_pred CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHH--------HcCCceEeccchhhhhhhHHHHHHHHhhhhh
Confidence 68899999999999999999999999999998777765554 3466699999999999999999887654331
Q ss_pred CeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcCCCceE
Q 003881 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 406 (789)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ 406 (789)
-.+.+++|..... .++.|+|+|.+.|..++.+....+..+.+||+||+|.|.+...+..++.++-.++...++
T Consensus 191 ~~vGL~TGDv~IN-------~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~~ 263 (1041)
T COG4581 191 DMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVRF 263 (1041)
T ss_pred hhccceecceeeC-------CCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCCCcE
Confidence 2245566665443 348899999999999999988889999999999999999999899999999999999999
Q ss_pred EEEeccCcHHHHHHHHHHhC---CCeEEeeccccCcccceeEEEEe-------cCCCcc---------------------
Q 003881 407 LLFSATMPRKVEKLAREILS---DPVRVTVGEVGMANEDITQVVHV-------IPSDAE--------------------- 455 (789)
Q Consensus 407 ll~SAT~~~~i~~l~~~~l~---~p~~i~i~~~~~~~~~i~q~~~~-------~~~~~~--------------------- 455 (789)
|+||||+|+. +++..|+.. .|..+.... ....+..+.+.. +.....
T Consensus 264 v~LSATv~N~-~EF~~Wi~~~~~~~~~vv~t~--~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~ 340 (1041)
T COG4581 264 VFLSATVPNA-EEFAEWIQRVHSQPIHVVSTE--HRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVR 340 (1041)
T ss_pred EEEeCCCCCH-HHHHHHHHhccCCCeEEEeec--CCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhcc
Confidence 9999999876 556766652 233332221 111112221111 110000
Q ss_pred -------------------------cHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHc-----------------
Q 003881 456 -------------------------KLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK----------------- 493 (789)
Q Consensus 456 -------------------------k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~----------------- 493 (789)
+...++..|.. ..--++|+||-++..|+.++..|...
T Consensus 341 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~-~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~ 419 (1041)
T COG4581 341 ETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDK-DNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIID 419 (1041)
T ss_pred ccCccccccccccccccCCcccccccchHHHhhhhh-hcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHH
Confidence 00001111111 01237999999999999888777521
Q ss_pred -----------CC-------------ceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEcC--
Q 003881 494 -----------GF-------------KAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDI-- 547 (789)
Q Consensus 494 -----------g~-------------~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~-- 547 (789)
++ -++++|++|=+..+..+...|..|-++||+||.+++.|+|.|.-++|+ +..
T Consensus 420 ~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~-~~l~K 498 (1041)
T COG4581 420 HAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVF-TSLSK 498 (1041)
T ss_pred HHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceee-eeeEE
Confidence 12 156899999999999999999999999999999999999999654444 332
Q ss_pred -------CCCHHHHHHHHhhcCCCC-CCCcEEEEEEc
Q 003881 548 -------ARDMDMHVHRIGRTGRAG-DKDGTAYTLVT 576 (789)
Q Consensus 548 -------p~s~~~yiQriGR~gR~G-~k~G~~i~lv~ 576 (789)
+-++..|.|+.||+||.| +..|.++++-.
T Consensus 499 ~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 499 FDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred ecCCceeecChhHHHHhhhhhccccccccceEEEecC
Confidence 347899999999999999 66788888743
No 107
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.92 E-value=5.8e-24 Score=209.40 Aligned_cols=166 Identities=35% Similarity=0.575 Sum_probs=143.0
Q ss_pred cHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCe
Q 003881 249 TSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIR 328 (789)
Q Consensus 249 tpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~ 328 (789)
||+|.++++.+++++++++.++||+|||++|+++++..+... ...++||++|+++|+.|+.+.+.+++...+++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~------~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 74 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG------KDARVLIIVPTRALAEQQFERLRKFFSNTNVR 74 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT------SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC------CCceEEEEeecccccccccccccccccccccc
Confidence 799999999999999999999999999999999999988653 12479999999999999999999998877889
Q ss_pred EEEEECCCChH-HHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcCC--Cce
Q 003881 329 VSAVYGGMSKL-DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP--DRQ 405 (789)
Q Consensus 329 v~~~~gg~~~~-~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~--~~q 405 (789)
+..++++.... .....+..+++|+|+||++|.+++......+.++++|||||+|.+..+.+...+..++..+.. +.|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~ 154 (169)
T PF00270_consen 75 VVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQ 154 (169)
T ss_dssp EEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSE
T ss_pred cccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCc
Confidence 99999998865 444445567999999999999999876557777999999999999998888888888887733 589
Q ss_pred EEEEeccCcHHHHHH
Q 003881 406 TLLFSATMPRKVEKL 420 (789)
Q Consensus 406 ~ll~SAT~~~~i~~l 420 (789)
++++|||+++.++.+
T Consensus 155 ~i~~SAT~~~~~~~~ 169 (169)
T PF00270_consen 155 IILLSATLPSNVEKL 169 (169)
T ss_dssp EEEEESSSTHHHHHH
T ss_pred EEEEeeCCChhHhhC
Confidence 999999999776653
No 108
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.92 E-value=1.6e-24 Score=242.51 Aligned_cols=321 Identities=20% Similarity=0.301 Sum_probs=228.3
Q ss_pred CCcHHHHHHHHHHH----cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHh
Q 003881 247 KPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (789)
Q Consensus 247 ~ptpiQ~~~i~~il----~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~ 322 (789)
++-+||.-+++|++ .+-+.|++.+||.|||++ +++.|+++.... ..||. |||||...|- .|.+++.+||
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g----~~gpH-LVVvPsSTle-NWlrEf~kwC 471 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIG----NPGPH-LVVVPSSTLE-NWLREFAKWC 471 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcC----CCCCc-EEEecchhHH-HHHHHHHHhC
Confidence 37799999999975 456889999999999998 777788876653 34665 9999997776 7999999999
Q ss_pred hhcCCeEEEEECCCChHHHHHHHh----cCCcEEEeChHHHHHHH-hhcccccCceeEEEEeccchhccCCChHHHHHHH
Q 003881 323 KSHGIRVSAVYGGMSKLDQFKELK----AGCEIVIATPGRLIDML-KMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIV 397 (789)
Q Consensus 323 ~~~~i~v~~~~gg~~~~~~~~~l~----~~~dIiV~Tp~~L~~~l-~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il 397 (789)
+ .++|..+||....+..++... ..++|+|+||.....-- .+..+.-.++.++|+||+|.+.++.-+ .+..++
T Consensus 472 P--sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~Se-Ry~~LM 548 (941)
T KOG0389|consen 472 P--SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSE-RYKHLM 548 (941)
T ss_pred C--ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchH-HHHHhc
Confidence 8 689999999887766665543 25899999996654211 112233457889999999998887522 222222
Q ss_pred hhcCCCceEEEEeccC-cHHHHHHHHHH---hCC-----------------------------------------CeEEe
Q 003881 398 GQIRPDRQTLLFSATM-PRKVEKLAREI---LSD-----------------------------------------PVRVT 432 (789)
Q Consensus 398 ~~l~~~~q~ll~SAT~-~~~i~~l~~~~---l~~-----------------------------------------p~~i~ 432 (789)
.++ ..+.|++|.|+ .+++.+|+..+ +.+ |....
T Consensus 549 -~I~-An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILR 626 (941)
T KOG0389|consen 549 -SIN-ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILR 626 (941)
T ss_pred -ccc-ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHH
Confidence 233 33446777774 34333331110 000 00000
Q ss_pred e--ccccCcccceeEEEEecC-----------------------------------------------------------
Q 003881 433 V--GEVGMANEDITQVVHVIP----------------------------------------------------------- 451 (789)
Q Consensus 433 i--~~~~~~~~~i~q~~~~~~----------------------------------------------------------- 451 (789)
- ..+-...+.-.+.+.+|.
T Consensus 627 R~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~ 706 (941)
T KOG0389|consen 627 RLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRK 706 (941)
T ss_pred HHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHH
Confidence 0 000000000000000000
Q ss_pred ---------------------------------------------------CCcccHHHHHHhcCCCCCC-CCEEEEecc
Q 003881 452 ---------------------------------------------------SDAEKLPWLLEKLPGMIDD-GDVLVFASK 479 (789)
Q Consensus 452 ---------------------------------------------------~~~~k~~~L~~~L~~~~~~-~kvLVF~~s 479 (789)
-+..|+..|..+|.+.... .+||||.+.
T Consensus 707 mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQF 786 (941)
T KOG0389|consen 707 MAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQF 786 (941)
T ss_pred HHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHH
Confidence 0345666666777665544 599999999
Q ss_pred cccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCC--cceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHH
Q 003881 480 KTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGV--YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHR 557 (789)
Q Consensus 480 ~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~--~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQr 557 (789)
...++.|...|...++.+..|.|.....+|+.+|..|...+ ..+|++|.+++-|||+..+++||+||...||-+-.|.
T Consensus 787 TqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QA 866 (941)
T KOG0389|consen 787 TQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQA 866 (941)
T ss_pred HHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchh
Confidence 99999999999999999999999999999999999998754 4579999999999999999999999999999999999
Q ss_pred HhhcCCCC-CCCcEEEEEEcccc
Q 003881 558 IGRTGRAG-DKDGTAYTLVTQKE 579 (789)
Q Consensus 558 iGR~gR~G-~k~G~~i~lv~~~d 579 (789)
-.||+|.| .++.++|.||+..-
T Consensus 867 EDRcHRvGQtkpVtV~rLItk~T 889 (941)
T KOG0389|consen 867 EDRCHRVGQTKPVTVYRLITKST 889 (941)
T ss_pred HHHHHhhCCcceeEEEEEEecCc
Confidence 99999999 45677888998764
No 109
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.92 E-value=1.4e-22 Score=208.46 Aligned_cols=302 Identities=20% Similarity=0.256 Sum_probs=211.8
Q ss_pred CCCcHHHHHHHHHHH----cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHH
Q 003881 246 EKPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il----~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~ 321 (789)
-+++|.|..+-..++ +..++|+.|-||+|||-. +.+.+..++.+ |..+.|..|....|..++..++..
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~-------G~~vciASPRvDVclEl~~Rlk~a 167 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQ-------GGRVCIASPRVDVCLELYPRLKQA 167 (441)
T ss_pred cccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhc-------CCeEEEecCcccchHHHHHHHHHh
Confidence 478999988876665 568999999999999985 67777777654 778999999999999999888877
Q ss_pred hhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHH-HHHhhc
Q 003881 322 AKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIR-SIVGQI 400 (789)
Q Consensus 322 ~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~-~il~~l 400 (789)
+. +..+.++||+....-. ..+||||...|+.+.+ .+++|||||+|..--.. ...+. .+-...
T Consensus 168 F~--~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP~~~-d~~L~~Av~~ar 230 (441)
T COG4098 168 FS--NCDIDLLYGDSDSYFR-------APLVVATTHQLLRFKQ-------AFDLLIIDEVDAFPFSD-DQSLQYAVKKAR 230 (441)
T ss_pred hc--cCCeeeEecCCchhcc-------ccEEEEehHHHHHHHh-------hccEEEEeccccccccC-CHHHHHHHHHhh
Confidence 65 5778889998765432 7899999988887654 56789999999743221 12233 233334
Q ss_pred CCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccH-----H-HHHHhcCCCC-CCCCE
Q 003881 401 RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKL-----P-WLLEKLPGMI-DDGDV 473 (789)
Q Consensus 401 ~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~-----~-~L~~~L~~~~-~~~kv 473 (789)
....-+|++|||+++.++.-+.. .+...+.+.......+-+.-.+.++.....++ . .|...|.+.. .+.++
T Consensus 231 k~~g~~IylTATp~k~l~r~~~~--g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~ 308 (441)
T COG4098 231 KKEGATIYLTATPTKKLERKILK--GNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPV 308 (441)
T ss_pred cccCceEEEecCChHHHHHHhhh--CCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcE
Confidence 45667999999999876544332 12222333222222222333333443322222 1 3444444332 34589
Q ss_pred EEEecccccHHHHHHHHHHc-C-CceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEcCC--C
Q 003881 474 LVFASKKTTVDEIESQLAQK-G-FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIA--R 549 (789)
Q Consensus 474 LVF~~s~~~a~~l~~~L~~~-g-~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p--~ 549 (789)
|||+++....+.++..|++. . ..++.+|+.. ..|.+.++.|++|++.|||+|.+++||+.+|+|+++|.-.-- .
T Consensus 309 liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vf 386 (441)
T COG4098 309 LIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVF 386 (441)
T ss_pred EEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccc
Confidence 99999999999999999553 2 3456777643 468899999999999999999999999999999987753322 4
Q ss_pred CHHHHHHHHhhcCCCCCC-CcEEEEEEc
Q 003881 550 DMDMHVHRIGRTGRAGDK-DGTAYTLVT 576 (789)
Q Consensus 550 s~~~yiQriGR~gR~G~k-~G~~i~lv~ 576 (789)
+-+..+|..||+||.-.+ .|.++.|--
T Consensus 387 TesaLVQIaGRvGRs~~~PtGdv~FFH~ 414 (441)
T COG4098 387 TESALVQIAGRVGRSLERPTGDVLFFHY 414 (441)
T ss_pred cHHHHHHHhhhccCCCcCCCCcEEEEec
Confidence 677889999999997633 455554443
No 110
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.91 E-value=6.4e-23 Score=234.72 Aligned_cols=125 Identities=22% Similarity=0.404 Sum_probs=106.6
Q ss_pred ccHHHHHHhcCCCC-CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCC--cceEEeehhhh
Q 003881 455 EKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGV--YHVLIATDVAA 531 (789)
Q Consensus 455 ~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~--~~VLVaT~v~~ 531 (789)
.|+..|.-+|.++. .+.++|||++...+++.|..+|.-+|+.++.|+|....++|+..+++|+... ++++++|...+
T Consensus 1260 GKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSgg 1339 (1958)
T KOG0391|consen 1260 GKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGG 1339 (1958)
T ss_pred chHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCc
Confidence 34444444444333 2458999999999999999999999999999999999999999999998864 56789999999
Q ss_pred ccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCC-CCcEEEEEEcccc
Q 003881 532 RGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGD-KDGTAYTLVTQKE 579 (789)
Q Consensus 532 rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~-k~G~~i~lv~~~d 579 (789)
.|||+.++++||+||..||+..-.|...||+|+|+ +.-+.|.||+..-
T Consensus 1340 vGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~T 1388 (1958)
T KOG0391|consen 1340 VGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERT 1388 (1958)
T ss_pred cccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccch
Confidence 99999999999999999999999999999999994 4566778887653
No 111
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.90 E-value=9e-23 Score=239.90 Aligned_cols=309 Identities=19% Similarity=0.280 Sum_probs=212.5
Q ss_pred HHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEE
Q 003881 251 IQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVS 330 (789)
Q Consensus 251 iQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~ 330 (789)
...+.+..+.+..-+|++++||||||++.-.-++...+ ..+.++.++-|.|.-|..+++.+.+.+ +.++.
T Consensus 54 ~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~-------~~~g~I~~tQPRRlAArsvA~RvAeel---~~~~G 123 (845)
T COG1643 54 VRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-------GIAGKIGCTQPRRLAARSVAERVAEEL---GEKLG 123 (845)
T ss_pred HHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc-------ccCCeEEecCchHHHHHHHHHHHHHHh---CCCcC
Confidence 34455666777788999999999999872222222221 234567889999988877766655543 33322
Q ss_pred EEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccc-hhccCCChHHHH-HHHhhcCCCceEEE
Q 003881 331 AVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD-RMFDLGFEPQIR-SIVGQIRPDRQTLL 408 (789)
Q Consensus 331 ~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah-~m~~~~f~~~i~-~il~~l~~~~q~ll 408 (789)
-.+|.....+. .......|-++|.|.|+..+..... |+.+++||||||| +-++.++.-.+. .++...+++.++|+
T Consensus 124 ~~VGY~iRfe~--~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIi 200 (845)
T COG1643 124 ETVGYSIRFES--KVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLII 200 (845)
T ss_pred ceeeEEEEeec--cCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEE
Confidence 22232222211 1123478999999999999976654 9999999999999 555555444333 44666677899999
Q ss_pred EeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcc-cHHHHHHhcCC--CCCCCCEEEEecccccHHH
Q 003881 409 FSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAE-KLPWLLEKLPG--MIDDGDVLVFASKKTTVDE 485 (789)
Q Consensus 409 ~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~-k~~~L~~~L~~--~~~~~kvLVF~~s~~~a~~ 485 (789)
||||+.. +.+...|..-|+...-+. ...|...+........ -...+...+.. ....|.+|||.+...+.+.
T Consensus 201 mSATld~--~rfs~~f~~apvi~i~GR----~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~ 274 (845)
T COG1643 201 MSATLDA--ERFSAYFGNAPVIEIEGR----TYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIER 274 (845)
T ss_pred EecccCH--HHHHHHcCCCCEEEecCC----ccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHH
Confidence 9999964 344444433444433222 2233333322222222 12222222211 1246799999999999999
Q ss_pred HHHHHHH----cCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEE--------EcC------
Q 003881 486 IESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN--------FDI------ 547 (789)
Q Consensus 486 l~~~L~~----~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~--------~d~------ 547 (789)
+.+.|.. ..+.+..|||.++..+..++++--..|+.+|++||++++.+|.|++|++||. |++
T Consensus 275 ~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~ 354 (845)
T COG1643 275 TAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTR 354 (845)
T ss_pred HHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCcee
Confidence 9999988 3578999999999999999988888887889999999999999999999996 433
Q ss_pred ----CCCHHHHHHHHhhcCCCCCCCcEEEEEEccccH
Q 003881 548 ----ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (789)
Q Consensus 548 ----p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~ 580 (789)
|-+-.+..||.|||||.+ +|+||.|++..+.
T Consensus 355 L~~~~ISqAsA~QRaGRAGR~~--pGicyRLyse~~~ 389 (845)
T COG1643 355 LETEPISKASADQRAGRAGRTG--PGICYRLYSEEDF 389 (845)
T ss_pred eeEEEechhhhhhhccccccCC--CceEEEecCHHHH
Confidence 235666789999999997 7999999997543
No 112
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.5e-22 Score=225.97 Aligned_cols=306 Identities=21% Similarity=0.281 Sum_probs=201.5
Q ss_pred HHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEE
Q 003881 252 QCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSA 331 (789)
Q Consensus 252 Q~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~ 331 (789)
.++++..|..+--+|+|++||||||.+ +|-+.+-.........++..+=|.-|.|..|..+......-+..++-.|.+
T Consensus 261 Eq~IMEaIn~n~vvIIcGeTGsGKTTQ--vPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsY 338 (1172)
T KOG0926|consen 261 EQRIMEAINENPVVIICGETGSGKTTQ--VPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSY 338 (1172)
T ss_pred HHHHHHHhhcCCeEEEecCCCCCcccc--chHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeE
Confidence 345677777777899999999999987 665544433322222334467788999998887765554433334444433
Q ss_pred E--ECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccch-hccCCChHHHHHHHhhc-------C
Q 003881 332 V--YGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR-MFDLGFEPQIRSIVGQI-------R 401 (789)
Q Consensus 332 ~--~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~-m~~~~f~~~i~~il~~l-------~ 401 (789)
. +.|.. .....|.++|.|.|+.-+... +.|..++.|||||||. -.+ ...+..+|.++ .
T Consensus 339 qIRfd~ti--------~e~T~IkFMTDGVLLrEi~~D-flL~kYSvIIlDEAHERSvn---TDILiGmLSRiV~LR~k~~ 406 (1172)
T KOG0926|consen 339 QIRFDGTI--------GEDTSIKFMTDGVLLREIEND-FLLTKYSVIILDEAHERSVN---TDILIGMLSRIVPLRQKYY 406 (1172)
T ss_pred EEEecccc--------CCCceeEEecchHHHHHHHHh-HhhhhceeEEechhhhccch---HHHHHHHHHHHHHHHHHHh
Confidence 3 33322 224789999999999988654 4589999999999994 222 12222222222 1
Q ss_pred ------CCceEEEEeccCcHHHHHHH--HHHhCC-CeEEeeccccCcccceeEEEEecCCCcccHHHH--HHhcCCCCCC
Q 003881 402 ------PDRQTLLFSATMPRKVEKLA--REILSD-PVRVTVGEVGMANEDITQVVHVIPSDAEKLPWL--LEKLPGMIDD 470 (789)
Q Consensus 402 ------~~~q~ll~SAT~~~~i~~l~--~~~l~~-p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L--~~~L~~~~~~ 470 (789)
...++|+||||+.- .++. ..++.. |-.+.+ ....-.+.-+|........-...+ .-.+.+.++.
T Consensus 407 ke~~~~kpLKLIIMSATLRV--sDFtenk~LFpi~pPlikV---dARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~ 481 (1172)
T KOG0926|consen 407 KEQCQIKPLKLIIMSATLRV--SDFTENKRLFPIPPPLIKV---DARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPP 481 (1172)
T ss_pred hhhcccCceeEEEEeeeEEe--cccccCceecCCCCceeee---ecccCceEEEeccCCCchHHHHHHHHHHHHhhcCCC
Confidence 14579999999842 2221 112221 112222 222223333332222111111111 1123455678
Q ss_pred CCEEEEecccccHHHHHHHHHHc---------------------------------------------------------
Q 003881 471 GDVLVFASKKTTVDEIESQLAQK--------------------------------------------------------- 493 (789)
Q Consensus 471 ~kvLVF~~s~~~a~~l~~~L~~~--------------------------------------------------------- 493 (789)
|.||||+..+.+++.|+..|++.
T Consensus 482 G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~ 561 (1172)
T KOG0926|consen 482 GGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGF 561 (1172)
T ss_pred CcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccc
Confidence 99999999999999999999763
Q ss_pred ------------------------------------------CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhh
Q 003881 494 ------------------------------------------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAA 531 (789)
Q Consensus 494 ------------------------------------------g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~ 531 (789)
.+-|..|++-++...+.+++..--.|..-++|||++++
T Consensus 562 ~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAE 641 (1172)
T KOG0926|consen 562 ASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAE 641 (1172)
T ss_pred hhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchh
Confidence 01277788888888888998888899999999999999
Q ss_pred ccCCCCCccEEEE--------EcCCCCHHHH----------HHHHhhcCCCCCCCcEEEEEEccc
Q 003881 532 RGLDIKSIKSVVN--------FDIARDMDMH----------VHRIGRTGRAGDKDGTAYTLVTQK 578 (789)
Q Consensus 532 rGlDI~~v~~VI~--------~d~p~s~~~y----------iQriGR~gR~G~k~G~~i~lv~~~ 578 (789)
..|.||++++||. ||--..++.| -||.||+||.| .|+||.|++..
T Consensus 642 TSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg--pGHcYRLYSSA 704 (1172)
T KOG0926|consen 642 TSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG--PGHCYRLYSSA 704 (1172)
T ss_pred cccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC--CCceeehhhhH
Confidence 9999999999996 6655555544 49999999999 79999999753
No 113
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.89 E-value=9.7e-22 Score=216.24 Aligned_cols=292 Identities=17% Similarity=0.210 Sum_probs=221.9
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHHhhhc-------------CC------eEEEEECCCChHHHHHHHhc----------
Q 003881 297 EGPIGVICAPTRELAHQIYLETKKFAKSH-------------GI------RVSAVYGGMSKLDQFKELKA---------- 347 (789)
Q Consensus 297 ~gp~vLIl~PtreLa~Qi~~~~~~~~~~~-------------~i------~v~~~~gg~~~~~~~~~l~~---------- 347 (789)
..|+||||||+|..|.++++.+.+++... ++ ....-.....+...+..+..
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 36999999999999999999998887541 10 00000011122233444432
Q ss_pred ---------------CCcEEEeChHHHHHHHhh------cccccCceeEEEEeccch--hccCCChHHHHHHHhhcCCC-
Q 003881 348 ---------------GCEIVIATPGRLIDMLKM------KALTMSRVTYLVLDEADR--MFDLGFEPQIRSIVGQIRPD- 403 (789)
Q Consensus 348 ---------------~~dIiV~Tp~~L~~~l~~------~~~~l~~i~~lVvDEah~--m~~~~f~~~i~~il~~l~~~- 403 (789)
.+|||||||-.|...+.. ....|++|+++|||.||. |.+|.+...+...++..|.+
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~ 195 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKS 195 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCC
Confidence 289999999999998874 345699999999999995 55666666666767666542
Q ss_pred --------------------ceEEEEeccCcHHHHHHHHHHhCCCe---EEee-----ccccCcccceeEEEEecCC---
Q 003881 404 --------------------RQTLLFSATMPRKVEKLAREILSDPV---RVTV-----GEVGMANEDITQVVHVIPS--- 452 (789)
Q Consensus 404 --------------------~q~ll~SAT~~~~i~~l~~~~l~~p~---~i~i-----~~~~~~~~~i~q~~~~~~~--- 452 (789)
||+|++|+...+++..+.+..|.|.. .+.. +........+.|.+..++.
T Consensus 196 ~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~ 275 (442)
T PF06862_consen 196 HDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSP 275 (442)
T ss_pred CCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCc
Confidence 79999999999999999999887742 2211 2223455667788877653
Q ss_pred ---CcccHHHHHH-hcCCCC---CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEE
Q 003881 453 ---DAEKLPWLLE-KLPGMI---DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLI 525 (789)
Q Consensus 453 ---~~~k~~~L~~-~L~~~~---~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLV 525 (789)
...++..+.. +|..+. ..+++|||++++-+..+|.++|++.++.++.||.+.++.+..++...|..|+.+|||
T Consensus 276 ~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL 355 (442)
T PF06862_consen 276 ADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILL 355 (442)
T ss_pred chhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEE
Confidence 2334444433 222222 456999999999999999999999999999999999999999999999999999999
Q ss_pred eehhhh--ccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCC-----CCCcEEEEEEccccHHHHHHHHH
Q 003881 526 ATDVAA--RGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG-----DKDGTAYTLVTQKEARFAGELVN 588 (789)
Q Consensus 526 aT~v~~--rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G-----~k~G~~i~lv~~~d~~~~~~lv~ 588 (789)
.|..++ +.+.|.++++||+|.+|.++..|...+.-..... .....|.+|++..|.-.+..|+-
T Consensus 356 ~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVG 425 (442)
T PF06862_consen 356 YTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVG 425 (442)
T ss_pred EEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhC
Confidence 999988 8999999999999999999999988886554433 13579999999999988887763
No 114
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.88 E-value=1.4e-21 Score=217.60 Aligned_cols=303 Identities=21% Similarity=0.273 Sum_probs=205.9
Q ss_pred HHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhh-hcCCeE
Q 003881 251 IQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK-SHGIRV 329 (789)
Q Consensus 251 iQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~-~~~i~v 329 (789)
+-.+.+..+...+-+|++++||||||.+ +| +++++..-. ...++.+.-|.|..|..++.....-.. .+|-.|
T Consensus 55 ~r~~il~~ve~nqvlIviGeTGsGKSTQ--ip--QyL~eaG~~---~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~V 127 (674)
T KOG0922|consen 55 YRDQILYAVEDNQVLIVIGETGSGKSTQ--IP--QYLAEAGFA---SSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEV 127 (674)
T ss_pred HHHHHHHHHHHCCEEEEEcCCCCCcccc--Hh--HHHHhcccc---cCCcEEeecCchHHHHHHHHHHHHHhCCCcCcee
Confidence 3456677777888999999999999987 33 333322111 122378899999998877655443322 223333
Q ss_pred EEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccch-hccCCChHHHHHHHhhc---CCCce
Q 003881 330 SAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR-MFDLGFEPQIRSIVGQI---RPDRQ 405 (789)
Q Consensus 330 ~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~-m~~~~f~~~i~~il~~l---~~~~q 405 (789)
.+.+--.... .....|.+.|.|.|++.+.... .|+.+++|||||||. -+. .+.+..+|..+ +++.+
T Consensus 128 GY~IRFed~t------s~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl~---TDiLlGlLKki~~~R~~Lk 197 (674)
T KOG0922|consen 128 GYTIRFEDST------SKDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSLH---TDILLGLLKKILKKRPDLK 197 (674)
T ss_pred eeEEEecccC------CCceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhhH---HHHHHHHHHHHHhcCCCce
Confidence 3222111111 1237899999999998876544 589999999999994 222 22333333333 56779
Q ss_pred EEEEeccCcHHHHHHHHHHhCC-CeEEeeccccCcccceeEEEEecCCCccc---HHHHHHhcCCCCCCCCEEEEecccc
Q 003881 406 TLLFSATMPRKVEKLAREILSD-PVRVTVGEVGMANEDITQVVHVIPSDAEK---LPWLLEKLPGMIDDGDVLVFASKKT 481 (789)
Q Consensus 406 ~ll~SAT~~~~i~~l~~~~l~~-p~~i~i~~~~~~~~~i~q~~~~~~~~~~k---~~~L~~~L~~~~~~~kvLVF~~s~~ 481 (789)
+|++|||+.- + ....|+.+ |+....+. .-.|...+..-+....- +..++++ ....+.|.+|||.+.++
T Consensus 198 lIimSATlda--~-kfS~yF~~a~i~~i~GR----~fPVei~y~~~p~~dYv~a~~~tv~~I-h~~E~~GDILvFLtGqe 269 (674)
T KOG0922|consen 198 LIIMSATLDA--E-KFSEYFNNAPILTIPGR----TFPVEILYLKEPTADYVDAALITVIQI-HLTEPPGDILVFLTGQE 269 (674)
T ss_pred EEEEeeeecH--H-HHHHHhcCCceEeecCC----CCceeEEeccCCchhhHHHHHHHHHHH-HccCCCCCEEEEeCCHH
Confidence 9999999963 3 45555555 54433332 22333333332221111 1222222 22346789999999999
Q ss_pred cHHHHHHHHHHc----C----CceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEE--------E
Q 003881 482 TVDEIESQLAQK----G----FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN--------F 545 (789)
Q Consensus 482 ~a~~l~~~L~~~----g----~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~--------~ 545 (789)
+++.+++.|.+. . .-+..+||.++..++.+++..-..|..+|+++|++++..|.|+++..||. |
T Consensus 270 EIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y 349 (674)
T KOG0922|consen 270 EIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKY 349 (674)
T ss_pred HHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEee
Confidence 999999999765 1 13578999999999999999889999999999999999999999999995 4
Q ss_pred cC----------CCCHHHHHHHHhhcCCCCCCCcEEEEEEccccH
Q 003881 546 DI----------ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (789)
Q Consensus 546 d~----------p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~ 580 (789)
++ |-|-..-.||.||+||.| +|.||.|++..+.
T Consensus 350 ~p~~g~~~L~v~~ISkasA~QRaGRAGRt~--pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 350 NPRTGLDSLIVVPISKASANQRAGRAGRTG--PGKCYRLYTESAY 392 (674)
T ss_pred ccccCccceeEEechHHHHhhhcccCCCCC--CceEEEeeeHHHH
Confidence 44 336667789999999998 7999999997754
No 115
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.88 E-value=3.9e-21 Score=221.66 Aligned_cols=323 Identities=18% Similarity=0.236 Sum_probs=213.6
Q ss_pred CCCcHHHHHHHHHHHc---C-------CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHH
Q 003881 246 EKPTSIQCQALPIILS---G-------RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIY 315 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~---g-------rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~ 315 (789)
..++|+|.+++..+.. | ..+|++..+|+|||++ ++++|..++++.+...+--.++|||||. .|+..|+
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq-~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWk 314 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQ-CISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWK 314 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHH-HHHHHHHHHHhCcCccccccccEEEccH-HHHHHHH
Confidence 3578999999998763 2 2478889999999998 6667777776644333333568999997 7889999
Q ss_pred HHHHHHhhhcCCeEEEEECCCChHHHHHHH---------hcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhcc
Q 003881 316 LETKKFAKSHGIRVSAVYGGMSKLDQFKEL---------KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD 386 (789)
Q Consensus 316 ~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l---------~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~ 386 (789)
+++.+|.....+....+++.... ++.++ .-..-|++.+++.+.+.+. .+.+..+++||+||.|++-+
T Consensus 315 kEF~KWl~~~~i~~l~~~~~~~~--~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~--~il~~~~glLVcDEGHrlkN 390 (776)
T KOG0390|consen 315 KEFGKWLGNHRINPLDFYSTKKS--SWIKLKSILFLGYKQFTTPVLIISYETASDYCR--KILLIRPGLLVCDEGHRLKN 390 (776)
T ss_pred HHHHHhccccccceeeeecccch--hhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--HHhcCCCCeEEECCCCCccc
Confidence 99999987667777888887664 11111 1125788899999876554 44567889999999999877
Q ss_pred CCChHHHHHHHhhcCCCceEEEEeccC-cHHHHHHHHHHh-CCC----------------eEE-----------------
Q 003881 387 LGFEPQIRSIVGQIRPDRQTLLFSATM-PRKVEKLAREIL-SDP----------------VRV----------------- 431 (789)
Q Consensus 387 ~~f~~~i~~il~~l~~~~q~ll~SAT~-~~~i~~l~~~~l-~~p----------------~~i----------------- 431 (789)
. ...+...|..+...+ .|++|.|+ .+++.++..-+. .+| +.-
T Consensus 391 ~--~s~~~kaL~~l~t~r-RVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl 467 (776)
T KOG0390|consen 391 S--DSLTLKALSSLKTPR-RVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERL 467 (776)
T ss_pred h--hhHHHHHHHhcCCCc-eEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHH
Confidence 4 456667777776555 46667774 333333321110 000 000
Q ss_pred -------------eeccc-cCcccceeEEEEecC----------------------------------------------
Q 003881 432 -------------TVGEV-GMANEDITQVVHVIP---------------------------------------------- 451 (789)
Q Consensus 432 -------------~i~~~-~~~~~~i~q~~~~~~---------------------------------------------- 451 (789)
..+.. ....+.....+.++.
T Consensus 468 ~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~ 547 (776)
T KOG0390|consen 468 QELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCE 547 (776)
T ss_pred HHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccc
Confidence 00000 000000000111110
Q ss_pred ---------------------------CCcccHHHHHHhcCCCCC--CCCEEEEecccccHHHHHHHHHHcCCceeeccC
Q 003881 452 ---------------------------SDAEKLPWLLEKLPGMID--DGDVLVFASKKTTVDEIESQLAQKGFKAAALHG 502 (789)
Q Consensus 452 ---------------------------~~~~k~~~L~~~L~~~~~--~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg 502 (789)
....|+..|..++..... ..++++..|.+...+.+...++-.|+.++.|||
T Consensus 548 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG 627 (776)
T KOG0390|consen 548 KTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDG 627 (776)
T ss_pred cccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcC
Confidence 011222233333211100 113444455566667777777777999999999
Q ss_pred CCCHHHHHHHHHHhhcCC---cceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCc-EEEEEEcc
Q 003881 503 DKDQASRMEILQKFKSGV---YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDG-TAYTLVTQ 577 (789)
Q Consensus 503 ~~~~~eR~~~l~~F~~G~---~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G-~~i~lv~~ 577 (789)
.|+..+|+.+++.|++-. .-+|++|.+.+.||++-+++.||+||++|||..-.|++.|+.|.|+++. .+|.|++.
T Consensus 628 ~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlat 706 (776)
T KOG0390|consen 628 KTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLAT 706 (776)
T ss_pred CCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecC
Confidence 999999999999998743 4467788999999999999999999999999999999999999996644 45667754
No 116
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.87 E-value=4.5e-21 Score=229.24 Aligned_cols=324 Identities=20% Similarity=0.242 Sum_probs=213.3
Q ss_pred CCcHHHHHHHHHHHcC---C-CEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHh
Q 003881 247 KPTSIQCQALPIILSG---R-DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (789)
Q Consensus 247 ~ptpiQ~~~i~~il~g---r-dvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~ 322 (789)
.+++.|..++..+++. . .+++.||||.|||.+.+++++..+... ....++++++.|++.++.++++.++++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~----~~~~~r~i~vlP~~t~ie~~~~r~~~~~ 270 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK----IKLKSRVIYVLPFRTIIEDMYRRAKEIF 270 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc----ccccceEEEEccHHHHHHHHHHHHHhhh
Confidence 3489999999998854 4 788999999999999888887766442 1257889999999999999999999887
Q ss_pred hhcCCeEEEEECCCChHHHHHH-----H---------hcCCcEEEeChHHHHHHHhh-cccc-c--CceeEEEEeccchh
Q 003881 323 KSHGIRVSAVYGGMSKLDQFKE-----L---------KAGCEIVIATPGRLIDMLKM-KALT-M--SRVTYLVLDEADRM 384 (789)
Q Consensus 323 ~~~~i~v~~~~gg~~~~~~~~~-----l---------~~~~dIiV~Tp~~L~~~l~~-~~~~-l--~~i~~lVvDEah~m 384 (789)
....+.....++.....-.... . ..-..++++||-.+...... .... + -..+++||||+|.+
T Consensus 271 ~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~ 350 (733)
T COG1203 271 GLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLY 350 (733)
T ss_pred cccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhh
Confidence 6443332212333222111000 0 01145566666555442211 1111 1 23478999999988
Q ss_pred ccCCChHHHHHHHhhc-CCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccC---cccceeEEEEecCCCcccHHHH
Q 003881 385 FDLGFEPQIRSIVGQI-RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGM---ANEDITQVVHVIPSDAEKLPWL 460 (789)
Q Consensus 385 ~~~~f~~~i~~il~~l-~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~---~~~~i~q~~~~~~~~~~k~~~L 460 (789)
.+......+..++..+ .....+|++|||+|+...+.+...+.....+....... ....+.+........... ..+
T Consensus 351 ~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~-~~~ 429 (733)
T COG1203 351 ADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQ-EEL 429 (733)
T ss_pred cccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhh-Hhh
Confidence 7764333333333333 34678999999999999988888877654443321100 000111110000000000 112
Q ss_pred HHhc-CCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhh----cCCcceEEeehhhhccCC
Q 003881 461 LEKL-PGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFK----SGVYHVLIATDVAARGLD 535 (789)
Q Consensus 461 ~~~L-~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~----~G~~~VLVaT~v~~rGlD 535 (789)
...+ .......+++|.|||+..|..+...|+..+..+.++|+.+...+|.+.++.++ .+...|+|||++++.|||
T Consensus 430 ~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvD 509 (733)
T COG1203 430 IELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVD 509 (733)
T ss_pred hhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEec
Confidence 2222 22334569999999999999999999998888999999999999998888654 467889999999999999
Q ss_pred CCCccEEEEEcCCCCHHHHHHHHhhcCCCCCC-CcEEEEEEccc
Q 003881 536 IKSIKSVVNFDIARDMDMHVHRIGRTGRAGDK-DGTAYTLVTQK 578 (789)
Q Consensus 536 I~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k-~G~~i~lv~~~ 578 (789)
|. .+++|- -+..++..+||+||++|-|.+ .|.++.+....
T Consensus 510 id-fd~mIT--e~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 510 ID-FDVLIT--ELAPIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred cc-cCeeee--cCCCHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 95 666553 244588999999999999933 56666665443
No 117
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=1.7e-20 Score=206.51 Aligned_cols=308 Identities=20% Similarity=0.297 Sum_probs=212.9
Q ss_pred CcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCC
Q 003881 248 PTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGI 327 (789)
Q Consensus 248 ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i 327 (789)
-.++-.+.+.++..++-+||.++||||||.+ +|-..|-... . ..+.++-+..|.|..|..+...+.+- .++
T Consensus 266 Vy~ykdell~av~e~QVLiI~GeTGSGKTTQ--iPQyL~EaGy---t-k~gk~IgcTQPRRVAAmSVAaRVA~E---Mgv 336 (902)
T KOG0923|consen 266 VYPYKDELLKAVKEHQVLIIVGETGSGKTTQ--IPQYLYEAGY---T-KGGKKIGCTQPRRVAAMSVAARVAEE---MGV 336 (902)
T ss_pred chhhHHHHHHHHHhCcEEEEEcCCCCCcccc--ccHHHHhccc---c-cCCceEeecCcchHHHHHHHHHHHHH---hCc
Confidence 3567777888888888899999999999987 5544432211 1 22444778899999998886555443 244
Q ss_pred eEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccc-hhccCCChHHHHHHHhhcCCCceE
Q 003881 328 RVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD-RMFDLGFEPQIRSIVGQIRPDRQT 406 (789)
Q Consensus 328 ~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah-~m~~~~f~~~i~~il~~l~~~~q~ 406 (789)
+...-+|..-..+.+. ....-|-++|.|.|+.-+... ..|.++++||||||| +-+..+..-.+-.-+.+++++.++
T Consensus 337 kLG~eVGYsIRFEdcT--SekTvlKYMTDGmLlREfL~e-pdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKl 413 (902)
T KOG0923|consen 337 KLGHEVGYSIRFEDCT--SEKTVLKYMTDGMLLREFLSE-PDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKL 413 (902)
T ss_pred ccccccceEEEecccc--CcceeeeeecchhHHHHHhcc-ccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceE
Confidence 3333333322222211 123568899999999877543 469999999999999 444444333444455667899999
Q ss_pred EEEeccCcHHHHHHHHHHhCC-CeEEeeccccCcccceeEEEEecCCCcccHHHHHHhcCC---CCCCCCEEEEeccccc
Q 003881 407 LLFSATMPRKVEKLAREILSD-PVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPG---MIDDGDVLVFASKKTT 482 (789)
Q Consensus 407 ll~SAT~~~~i~~l~~~~l~~-p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~---~~~~~kvLVF~~s~~~ 482 (789)
|+.|||+.-. + ...|+.+ |++...+. ...+...+...+. .+-+...+..+.+ ..+.|.||||...++.
T Consensus 414 lIsSAT~DAe--k-FS~fFDdapIF~iPGR----RyPVdi~Yt~~PE-AdYldAai~tVlqIH~tqp~GDILVFltGQeE 485 (902)
T KOG0923|consen 414 LISSATMDAE--K-FSAFFDDAPIFRIPGR----RYPVDIFYTKAPE-ADYLDAAIVTVLQIHLTQPLGDILVFLTGQEE 485 (902)
T ss_pred EeeccccCHH--H-HHHhccCCcEEeccCc----ccceeeecccCCc-hhHHHHHHhhheeeEeccCCccEEEEeccHHH
Confidence 9999999532 3 4445554 55444332 2233333333333 2333333222221 2245789999999999
Q ss_pred HHHHHHHHHHc---------CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEE--------E
Q 003881 483 VDEIESQLAQK---------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN--------F 545 (789)
Q Consensus 483 a~~l~~~L~~~---------g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~--------~ 545 (789)
.+.....|.+. .+-++.||..++...+..+++---.|..+|++||++++..|.|++|..||. |
T Consensus 486 IEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsy 565 (902)
T KOG0923|consen 486 IETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSY 565 (902)
T ss_pred HHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCc
Confidence 88887777653 356889999999999999999889999999999999999999999999995 3
Q ss_pred cC----------CCCHHHHHHHHhhcCCCCCCCcEEEEEEcc
Q 003881 546 DI----------ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (789)
Q Consensus 546 d~----------p~s~~~yiQriGR~gR~G~k~G~~i~lv~~ 577 (789)
++ |-+-..-.||.||+||.| +|.||.|++.
T Consensus 566 nprtGmesL~v~piSKAsA~QRaGRAGRtg--PGKCfRLYt~ 605 (902)
T KOG0923|consen 566 NPRTGMESLLVTPISKASANQRAGRAGRTG--PGKCFRLYTA 605 (902)
T ss_pred CCCcCceeEEEeeechhhhhhhccccCCCC--CCceEEeech
Confidence 33 334556689999999998 7999999984
No 118
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.86 E-value=1.5e-20 Score=207.28 Aligned_cols=147 Identities=24% Similarity=0.408 Sum_probs=120.7
Q ss_pred CcccHHHHHHhcCCCCCC-CCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCC-cceEEeehhh
Q 003881 453 DAEKLPWLLEKLPGMIDD-GDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGV-YHVLIATDVA 530 (789)
Q Consensus 453 ~~~k~~~L~~~L~~~~~~-~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~-~~VLVaT~v~ 530 (789)
+..|+..|.++|.++..+ .++|+|.+...+.+.+.++|...++....|.|.....+|..++..|+..+ +-+|++|.++
T Consensus 1026 dSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAG 1105 (1185)
T KOG0388|consen 1026 DSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAG 1105 (1185)
T ss_pred cccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccC
Confidence 456666777777665544 49999999999999999999999999999999999999999999998865 4568899999
Q ss_pred hccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCC-CCcEEEEEEccccHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 003881 531 ARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGD-KDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAM 606 (789)
Q Consensus 531 ~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~-k~G~~i~lv~~~d~~~~~~lv~~l~~~~q~vp~~l~~~a~ 606 (789)
+-|||+..+++||+||..|||..-.|.+.|++|.|+ +..++|.|++..-.. .+.|..++|. .++..+.+
T Consensus 1106 GLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvE-----Ek~l~rA~qK--~~vQq~Vm 1175 (1185)
T KOG0388|consen 1106 GLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVE-----EKVLERANQK--DEVQQMVM 1175 (1185)
T ss_pred cccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHH-----HHHHHHhhhH--HHHHHHHH
Confidence 999999999999999999999999999999999994 456788888876432 2345555553 23444555
No 119
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=1.3e-20 Score=207.34 Aligned_cols=309 Identities=20% Similarity=0.258 Sum_probs=205.9
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003881 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (789)
Q Consensus 247 ~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~ 326 (789)
.-...+.+.+..|-..+-+|++++||||||.+ +-++++.... .++..+-+..|.|..|..++..+..-. +
T Consensus 356 Pvf~~R~~ll~~ir~n~vvvivgETGSGKTTQ----l~QyL~edGY---~~~GmIGcTQPRRvAAiSVAkrVa~EM---~ 425 (1042)
T KOG0924|consen 356 PVFACRDQLLSVIRENQVVVIVGETGSGKTTQ----LAQYLYEDGY---ADNGMIGCTQPRRVAAISVAKRVAEEM---G 425 (1042)
T ss_pred chHHHHHHHHHHHhhCcEEEEEecCCCCchhh----hHHHHHhccc---ccCCeeeecCchHHHHHHHHHHHHHHh---C
Confidence 34556777777777888899999999999988 2344443321 123456677899999988766555433 3
Q ss_pred CeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccc-hhccCCChHHHHHHHhhcCCCce
Q 003881 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD-RMFDLGFEPQIRSIVGQIRPDRQ 405 (789)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah-~m~~~~f~~~i~~il~~l~~~~q 405 (789)
.....-+|..-..+... .....|-++|.+.|+.-..... .|.++++||+|||| +-++.+..-.+.+.+-.-+.+.+
T Consensus 426 ~~lG~~VGYsIRFEdvT--~~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERslNtDilfGllk~~larRrdlK 502 (1042)
T KOG0924|consen 426 VTLGDTVGYSIRFEDVT--SEDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLK 502 (1042)
T ss_pred CccccccceEEEeeecC--CCceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhcccchHHHHHHHHHHHHhhccce
Confidence 33333333322222111 1236788999999987654333 58899999999999 44554433333333333456889
Q ss_pred EEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHH-HHHhc--CCCCCCCCEEEEeccccc
Q 003881 406 TLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPW-LLEKL--PGMIDDGDVLVFASKKTT 482 (789)
Q Consensus 406 ~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~-L~~~L--~~~~~~~kvLVF~~s~~~ 482 (789)
+|++|||+. .+.+...|.+.|.....+... .+...+...+.. +-..+ +-..+ ......|.+|||...++.
T Consensus 503 liVtSATm~--a~kf~nfFgn~p~f~IpGRTy----PV~~~~~k~p~e-DYVeaavkq~v~Ihl~~~~GdilIfmtGqed 575 (1042)
T KOG0924|consen 503 LIVTSATMD--AQKFSNFFGNCPQFTIPGRTY----PVEIMYTKTPVE-DYVEAAVKQAVQIHLSGPPGDILIFMTGQED 575 (1042)
T ss_pred EEEeecccc--HHHHHHHhCCCceeeecCCcc----ceEEEeccCchH-HHHHHHHhhheEeeccCCCCCEEEecCCCcc
Confidence 999999994 556666665566554443321 222222222211 11222 11222 112245789999999887
Q ss_pred HHHHHHHHHHc----------CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEcC-----
Q 003881 483 VDEIESQLAQK----------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDI----- 547 (789)
Q Consensus 483 a~~l~~~L~~~----------g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~----- 547 (789)
.+-.+..+... ++.+..|++-|++..+.+++..-..|..+++|||++++..|.|+++.+||..+.
T Consensus 576 iE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kv 655 (1042)
T KOG0924|consen 576 IECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKV 655 (1042)
T ss_pred hhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeee
Confidence 66655555432 678999999999999999999888999999999999999999999999996332
Q ss_pred -------------CCCHHHHHHHHhhcCCCCCCCcEEEEEEcc
Q 003881 548 -------------ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (789)
Q Consensus 548 -------------p~s~~~yiQriGR~gR~G~k~G~~i~lv~~ 577 (789)
|-+-..-.||.||+||.| +|+||.+++.
T Consensus 656 yn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~--pG~cYRlYTe 696 (1042)
T KOG0924|consen 656 YNPRIGMDALQIVPISQANADQRAGRAGRTG--PGTCYRLYTE 696 (1042)
T ss_pred cccccccceeEEEechhccchhhccccCCCC--Ccceeeehhh
Confidence 334555679999999998 7999999987
No 120
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.86 E-value=4.1e-20 Score=216.55 Aligned_cols=133 Identities=22% Similarity=0.382 Sum_probs=117.6
Q ss_pred cccHHHHHHhcCCCCC-CCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhc
Q 003881 454 AEKLPWLLEKLPGMID-DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAAR 532 (789)
Q Consensus 454 ~~k~~~L~~~L~~~~~-~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~r 532 (789)
..++..|++.|..... +.++||||+++..++.|+++|...++.+..+|+++++.+|..++..|+.|++.|||||+++++
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~r 504 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLRE 504 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcC
Confidence 4566677777765443 458999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccEEEEEc-----CCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHH
Q 003881 533 GLDIKSIKSVVNFD-----IARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVN 588 (789)
Q Consensus 533 GlDI~~v~~VI~~d-----~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~ 588 (789)
|+|+|++++||++| .|.+...|+||+||+||.. .|.+++|++..+..+...|.+
T Consensus 505 GfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~--~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 505 GLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV--NGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred CeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC--CCEEEEEEcCCCHHHHHHHHH
Confidence 99999999999998 7999999999999999974 699999999876655544443
No 121
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.86 E-value=2.8e-20 Score=217.90 Aligned_cols=314 Identities=21% Similarity=0.263 Sum_probs=227.7
Q ss_pred CcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHh-hhcC
Q 003881 248 PTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA-KSHG 326 (789)
Q Consensus 248 ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~-~~~~ 326 (789)
-+..+.+.+..+.+.+-+++.++||+|||.+.---+|.+..... ....+++..|.|--|..+++.+..-- ...+
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-----~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g 248 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG-----AACNIICTQPRRISAISVAERVAKERGESLG 248 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC-----CCCeEEecCCchHHHHHHHHHHHHHhccccC
Confidence 35678888899999999999999999999985555555554432 34457888999999988887766432 2334
Q ss_pred CeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccc-hhccCCChHHHHHHHhhcCCCce
Q 003881 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD-RMFDLGFEPQIRSIVGQIRPDRQ 405 (789)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah-~m~~~~f~~~i~~il~~l~~~~q 405 (789)
-.|.+-.+..+.. .....+++||.|.|++.+.. ...+..+++||+||+| |=.+.+|.-.+.+.+-..+++.+
T Consensus 249 ~~VGYqvrl~~~~------s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~Lk 321 (924)
T KOG0920|consen 249 EEVGYQVRLESKR------SRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLK 321 (924)
T ss_pred CeeeEEEeeeccc------CCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCce
Confidence 3444433332221 12378999999999999977 5568899999999999 55666777777777777789999
Q ss_pred EEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcc----------------cceeEE------------EEe--cCCCcc
Q 003881 406 TLLFSATMPRKVEKLAREILSDPVRVTVGEVGMAN----------------EDITQV------------VHV--IPSDAE 455 (789)
Q Consensus 406 ~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~----------------~~i~q~------------~~~--~~~~~~ 455 (789)
+|+||||+. .++...|+...-.+.+....... .+..+. ... ...+..
T Consensus 322 vILMSAT~d---ae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~ 398 (924)
T KOG0920|consen 322 VILMSATLD---AELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYD 398 (924)
T ss_pred EEEeeeecc---hHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHH
Confidence 999999996 33455555554444332211100 000000 000 001122
Q ss_pred cHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHc-------CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeeh
Q 003881 456 KLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK-------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD 528 (789)
Q Consensus 456 k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~-------g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~ 528 (789)
-+..|+..+......|.||||.+...++..+.+.|... .+-+..+|+.|+..+...+...--.|..+|+++|+
T Consensus 399 Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTN 478 (924)
T KOG0920|consen 399 LIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATN 478 (924)
T ss_pred HHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhh
Confidence 33455566666656789999999999999999999653 36788999999999999999999999999999999
Q ss_pred hhhccCCCCCccEEEE--------EcCCCCHH----------HHHHHHhhcCCCCCCCcEEEEEEccc
Q 003881 529 VAARGLDIKSIKSVVN--------FDIARDMD----------MHVHRIGRTGRAGDKDGTAYTLVTQK 578 (789)
Q Consensus 529 v~~rGlDI~~v~~VI~--------~d~p~s~~----------~yiQriGR~gR~G~k~G~~i~lv~~~ 578 (789)
+++..|.|++|-+||. ||+-.+.. .-.||.||+||. ..|.||.+++..
T Consensus 479 IAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv--~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 479 IAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV--RPGICYHLYTRS 544 (924)
T ss_pred hHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc--cCCeeEEeechh
Confidence 9999999999999995 66655433 336999999998 489999999864
No 122
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.85 E-value=3.1e-19 Score=217.59 Aligned_cols=346 Identities=20% Similarity=0.223 Sum_probs=213.3
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHH----HHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCc
Q 003881 232 FSTQLMHAISKQGYEKPTSIQCQALP----IILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (789)
Q Consensus 232 l~~~l~~~l~~~g~~~ptpiQ~~~i~----~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~Pt 307 (789)
+++.+...+...||. ++|.|.+.+. .+..++++++.|+||+|||++|++|++.++. .+.++||.+||
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~--------~~~~vvi~t~t 301 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI--------TEKPVVISTNT 301 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc--------CCCeEEEEeCc
Confidence 344666777777886 8999998776 4557899999999999999999999988763 23469999999
Q ss_pred HHHHHHHHH-HHHHHhhhcC--CeEEEEECCCChH-----H----------H----------------------------
Q 003881 308 RELAHQIYL-ETKKFAKSHG--IRVSAVYGGMSKL-----D----------Q---------------------------- 341 (789)
Q Consensus 308 reLa~Qi~~-~~~~~~~~~~--i~v~~~~gg~~~~-----~----------~---------------------------- 341 (789)
++|..|+.. ++..+.+.++ ++++++.|+...- . .
T Consensus 302 ~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~ 381 (850)
T TIGR01407 302 KVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGG 381 (850)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCc
Confidence 999999965 5666655444 7777777655310 0 0
Q ss_pred ----HH------------------------HHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCC-----
Q 003881 342 ----FK------------------------ELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG----- 388 (789)
Q Consensus 342 ----~~------------------------~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~----- 388 (789)
+. .....++|||+.+.-|+..+......+....+|||||||+|.+..
T Consensus 382 ~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~ 461 (850)
T TIGR01407 382 NKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQ 461 (850)
T ss_pred chhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhc
Confidence 00 001237999999999888765443345667899999999874300
Q ss_pred --C-----hH----------------------------------------------------------------HHHHHH
Q 003881 389 --F-----EP----------------------------------------------------------------QIRSIV 397 (789)
Q Consensus 389 --f-----~~----------------------------------------------------------------~i~~il 397 (789)
+ .. .+...+
T Consensus 462 ~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~ 541 (850)
T TIGR01407 462 EELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFD 541 (850)
T ss_pred ceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 0 00 000000
Q ss_pred hh---------------------c---------------------------CCCceEEEEeccCcHH-HHHHHHHHhCCC
Q 003881 398 GQ---------------------I---------------------------RPDRQTLLFSATMPRK-VEKLAREILSDP 428 (789)
Q Consensus 398 ~~---------------------l---------------------------~~~~q~ll~SAT~~~~-i~~l~~~~l~~p 428 (789)
.. . +....+|++|||+... -.......++-+
T Consensus 542 ~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~ 621 (850)
T TIGR01407 542 LALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLT 621 (850)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCC
Confidence 00 0 0124688999998631 122333333321
Q ss_pred --eEEeeccccCcccceeEEEEecCCC---------cccHHHHHHhcCCC--CCCCCEEEEecccccHHHHHHHHHH---
Q 003881 429 --VRVTVGEVGMANEDITQVVHVIPSD---------AEKLPWLLEKLPGM--IDDGDVLVFASKKTTVDEIESQLAQ--- 492 (789)
Q Consensus 429 --~~i~i~~~~~~~~~i~q~~~~~~~~---------~~k~~~L~~~L~~~--~~~~kvLVF~~s~~~a~~l~~~L~~--- 492 (789)
....+...+.. ...+...+++.+ ..-...+...|.+. ...+++|||++++..++.++..|..
T Consensus 622 ~~~~~~~~~spf~--~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~ 699 (850)
T TIGR01407 622 DVHFNTIEPTPLN--YAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPE 699 (850)
T ss_pred ccccceecCCCCC--HHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhcc
Confidence 11111101111 011111222111 11112233333221 1357999999999999999999975
Q ss_pred -cCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCcc--EEEEEcCCCC----H--------------
Q 003881 493 -KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIK--SVVNFDIARD----M-------------- 551 (789)
Q Consensus 493 -~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~--~VI~~d~p~s----~-------------- 551 (789)
.++. ++..+.. ..|..+++.|++++..||++|+.+.+|||+++.. +||+..+|.. +
T Consensus 700 ~~~~~--~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~ 776 (850)
T TIGR01407 700 FEGYE--VLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGK 776 (850)
T ss_pred ccCce--EEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcC
Confidence 2333 3333333 4789999999999999999999999999999865 5677665531 1
Q ss_pred ------------HHHHHHHhhcCCCCCCCcEEEEEEcc-ccHHHHHHHHHHHH
Q 003881 552 ------------DMHVHRIGRTGRAGDKDGTAYTLVTQ-KEARFAGELVNSLI 591 (789)
Q Consensus 552 ------------~~yiQriGR~gR~G~k~G~~i~lv~~-~d~~~~~~lv~~l~ 591 (789)
..+.|.+||.-|..+..|.++++-.. ....+-..+++.|.
T Consensus 777 ~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 777 NPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred CchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhCC
Confidence 22359999999987445554443222 23445566666663
No 123
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=6.8e-20 Score=214.54 Aligned_cols=139 Identities=21% Similarity=0.263 Sum_probs=117.5
Q ss_pred CcccHHHHHHhcCCCC-CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhh
Q 003881 453 DAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAA 531 (789)
Q Consensus 453 ~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~ 531 (789)
...|+..|++.+.... ...+|||||+++..++.|+..|...++++.+||+ .+.+|+..+..|+.+...|+|||++++
T Consensus 580 ~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAG 657 (1025)
T PRK12900 580 RREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAG 657 (1025)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcC
Confidence 4467888888775432 3569999999999999999999999999999997 688999999999999999999999999
Q ss_pred ccCCCC---Ccc-----EEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHH----HHHHHHHHHcC
Q 003881 532 RGLDIK---SIK-----SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFA----GELVNSLIAAG 594 (789)
Q Consensus 532 rGlDI~---~v~-----~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~----~~lv~~l~~~~ 594 (789)
||+||+ +|. +||+++.|.+...|.|++||+||.| .+|.+++|++..|.-+- ..+...+...+
T Consensus 658 RGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqG-dpGsS~ffvSleD~Lmr~f~~~~i~~~~~~~~ 731 (1025)
T PRK12900 658 RGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQG-DPGESVFYVSLEDELMRLFGSDRVISVMDRLG 731 (1025)
T ss_pred CCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCC-CCcceEEEechhHHHHHhhCcHHHHHHHHHcC
Confidence 999999 554 4599999999999999999999999 68999999998775431 13555555544
No 124
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.83 E-value=7.3e-19 Score=202.71 Aligned_cols=289 Identities=26% Similarity=0.397 Sum_probs=203.1
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHH
Q 003881 236 LMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIY 315 (789)
Q Consensus 236 l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~ 315 (789)
+.+.+.+.-...|+..|.-...-++.|+..-++||||.|||. |.+.+-.++.. .|.+++||+||+.|+.|++
T Consensus 71 ~~~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTT-fg~~~sl~~a~-------kgkr~yii~PT~~Lv~Q~~ 142 (1187)
T COG1110 71 FEEFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTT-FGLLMSLYLAK-------KGKRVYIIVPTTTLVRQVY 142 (1187)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhH-HHHHHHHHHHh-------cCCeEEEEecCHHHHHHHH
Confidence 334455554448999999999999999999999999999996 44444444422 3678999999999999999
Q ss_pred HHHHHHhhhcC-CeEEEEECCC-ChHH---HHHHHhc-CCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhcc---
Q 003881 316 LETKKFAKSHG-IRVSAVYGGM-SKLD---QFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD--- 386 (789)
Q Consensus 316 ~~~~~~~~~~~-i~v~~~~gg~-~~~~---~~~~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~--- 386 (789)
+.+.+++...+ .++.++|.+. +..+ ....+.+ +.||+|+|..-|...+.. +.--++++|++|.+|.++.
T Consensus 143 ~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~Lkask 220 (1187)
T COG1110 143 ERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILKASK 220 (1187)
T ss_pred HHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHhccc
Confidence 99999987665 5554444444 3322 3334444 599999998766554431 1113689999999997653
Q ss_pred --------CCChHH-------HHHHHhhc------------------------CCCceEEEEeccCcHH--HHHHHHHHh
Q 003881 387 --------LGFEPQ-------IRSIVGQI------------------------RPDRQTLLFSATMPRK--VEKLAREIL 425 (789)
Q Consensus 387 --------~~f~~~-------i~~il~~l------------------------~~~~q~ll~SAT~~~~--i~~l~~~~l 425 (789)
.||... +..+...+ ....++++.|||..+. -..+.+.++
T Consensus 221 NvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLl 300 (1187)
T COG1110 221 NVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELL 300 (1187)
T ss_pred cHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHh
Confidence 233321 11111111 1235899999996433 234555555
Q ss_pred CCCeEEeeccccCcccceeEEEEecCCCcccHHHHHHhcCCCCCCCCEEEEecc---cccHHHHHHHHHHcCCceeeccC
Q 003881 426 SDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASK---KTTVDEIESQLAQKGFKAAALHG 502 (789)
Q Consensus 426 ~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s---~~~a~~l~~~L~~~g~~v~~lhg 502 (789)
+ +.++.......+|...+... .-...++++++++ +...|||++. ++.++.|+++|+.+|+++..+|.
T Consensus 301 g----FevG~~~~~LRNIvD~y~~~----~~~e~~~elvk~l--G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a 370 (1187)
T COG1110 301 G----FEVGSGGEGLRNIVDIYVES----ESLEKVVELVKKL--GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHA 370 (1187)
T ss_pred C----CccCccchhhhheeeeeccC----ccHHHHHHHHHHh--CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeec
Confidence 4 34444444455555554433 3344445555543 3478999999 99999999999999999999998
Q ss_pred CCCHHHHHHHHHHhhcCCcceEEee----hhhhccCCCCC-ccEEEEEcCCC
Q 003881 503 DKDQASRMEILQKFKSGVYHVLIAT----DVAARGLDIKS-IKSVVNFDIAR 549 (789)
Q Consensus 503 ~~~~~eR~~~l~~F~~G~~~VLVaT----~v~~rGlDI~~-v~~VI~~d~p~ 549 (789)
. ....++.|..|+++|||.. .++-||||+|. ++.+|+|+.|.
T Consensus 371 ~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 371 E-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred c-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 4 3778999999999999976 67789999997 88999999995
No 125
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.83 E-value=1.8e-20 Score=214.71 Aligned_cols=315 Identities=20% Similarity=0.292 Sum_probs=213.7
Q ss_pred CCCcHHHHHHHHHHH----cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHH
Q 003881 246 EKPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il----~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~ 321 (789)
.++.+||..++.|+. +.-+.|++.+||.|||++ .+.++.+++.... ..||. |||||+..|. .|..++.+|
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K~---~~GP~-LvivPlstL~-NW~~Ef~kW 466 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHKQ---MQGPF-LIIVPLSTLV-NWSSEFPKW 466 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHcc---cCCCe-EEeccccccC-Cchhhcccc
Confidence 378899999999986 335789999999999997 7778888887643 45776 8999999998 599999999
Q ss_pred hhhcCCeEEEEECCCChHHHHH--HHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhh
Q 003881 322 AKSHGIRVSAVYGGMSKLDQFK--ELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQ 399 (789)
Q Consensus 322 ~~~~~i~v~~~~gg~~~~~~~~--~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~ 399 (789)
+. .+..+.+.|....+..+. .....++|+++|++.++. .+..+.-.+|.|+||||.|+|.+. ...+...+..
T Consensus 467 aP--Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa--~~KLt~~L~t 540 (1157)
T KOG0386|consen 467 AP--SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNA--ICKLTDTLNT 540 (1157)
T ss_pred cc--ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccch--hhHHHHHhhc
Confidence 76 455555555332222111 112458999999988865 333344457889999999999763 2222222221
Q ss_pred cCCCceEEEEeccC-cHHHHHH----------------------------------------------------------
Q 003881 400 IRPDRQTLLFSATM-PRKVEKL---------------------------------------------------------- 420 (789)
Q Consensus 400 l~~~~q~ll~SAT~-~~~i~~l---------------------------------------------------------- 420 (789)
.-.....+++|.|+ .+.+.++
T Consensus 541 ~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRR 620 (1157)
T KOG0386|consen 541 HYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRR 620 (1157)
T ss_pred cccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHh
Confidence 11111223333332 1111000
Q ss_pred ----------------------------------------------------------HHHHhCCCeEEeeccccCcccc
Q 003881 421 ----------------------------------------------------------AREILSDPVRVTVGEVGMANED 442 (789)
Q Consensus 421 ----------------------------------------------------------~~~~l~~p~~i~i~~~~~~~~~ 442 (789)
++++|.+|..+.-. ...
T Consensus 621 lKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~v-----e~~ 695 (1157)
T KOG0386|consen 621 LKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANV-----ENS 695 (1157)
T ss_pred hhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhh-----ccc
Confidence 11222222111000 000
Q ss_pred eeEEEE--ecCCCcccHHHHHHhcCCCC-CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcC
Q 003881 443 ITQVVH--VIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSG 519 (789)
Q Consensus 443 i~q~~~--~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G 519 (789)
+...+. .+-....|+..|..+|.++. .+++||.||......+.+..+|.-.++....+.|.....+|...+..|+.-
T Consensus 696 ~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~P 775 (1157)
T KOG0386|consen 696 YTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAP 775 (1157)
T ss_pred cccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCC
Confidence 000000 00012356666656665543 356999999999999999999999999999999999999999999999875
Q ss_pred C---cceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCC-CcEEEEEEcc
Q 003881 520 V---YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDK-DGTAYTLVTQ 577 (789)
Q Consensus 520 ~---~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k-~G~~i~lv~~ 577 (789)
. +.+|++|.+.+.|||+..+++||+||..|++..+.|+..|++|+|++ ...++.+++-
T Consensus 776 ds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv 837 (1157)
T KOG0386|consen 776 DSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITV 837 (1157)
T ss_pred CCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehh
Confidence 4 45799999999999999999999999999999999999999999954 3445555543
No 126
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.83 E-value=2.9e-18 Score=199.38 Aligned_cols=317 Identities=21% Similarity=0.293 Sum_probs=215.9
Q ss_pred CCCcHHHHHHHHHHHcC----CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHH
Q 003881 246 EKPTSIQCQALPIILSG----RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~g----rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~ 321 (789)
..+++-|..++..|... ...++.+-||||||-+|+=.+-..+ . .|..+|||+|-..|..|+...++..
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L-~-------~GkqvLvLVPEI~Ltpq~~~rf~~r 268 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVL-A-------QGKQVLVLVPEIALTPQLLARFKAR 268 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHH-H-------cCCEEEEEeccccchHHHHHHHHHH
Confidence 46788999999999765 6789999999999998766554444 3 3678999999999999998888877
Q ss_pred hhhcCCeEEEEECCCChHHHHHHH---h-cCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchh--ccC---CChHH
Q 003881 322 AKSHGIRVSAVYGGMSKLDQFKEL---K-AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM--FDL---GFEPQ 392 (789)
Q Consensus 322 ~~~~~i~v~~~~gg~~~~~~~~~l---~-~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m--~~~---~f~~~ 392 (789)
+ +.++.+++++.+..+....+ . ....|||+|-..| ...+.++.+|||||-|.- ... .+...
T Consensus 269 F---g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhAR 338 (730)
T COG1198 269 F---GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHAR 338 (730)
T ss_pred h---CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCCCcCHH
Confidence 5 68889999999876654444 3 3589999995444 236789999999999942 221 12222
Q ss_pred HHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccC-cccceeEEEEecCCCccc----HHHHHHhcCCC
Q 003881 393 IRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGM-ANEDITQVVHVIPSDAEK----LPWLLEKLPGM 467 (789)
Q Consensus 393 i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~-~~~~i~q~~~~~~~~~~k----~~~L~~~L~~~ 467 (789)
-..++..-..+.++|+-|||+. ++.+.+-.-+....+....... +...-.+.+.+-...... -..|++.+++.
T Consensus 339 dvA~~Ra~~~~~pvvLgSATPS--LES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~ 416 (730)
T COG1198 339 DVAVLRAKKENAPVVLGSATPS--LESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKT 416 (730)
T ss_pred HHHHHHHHHhCCCEEEecCCCC--HHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHH
Confidence 2234444446788999999986 3444443222222332222211 111111222221111111 14566666544
Q ss_pred CC-CCCEEEEecccccH------------------------------------------------------------HHH
Q 003881 468 ID-DGDVLVFASKKTTV------------------------------------------------------------DEI 486 (789)
Q Consensus 468 ~~-~~kvLVF~~s~~~a------------------------------------------------------------~~l 486 (789)
+. +.++|||+|++-.+ +++
T Consensus 417 l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gteri 496 (730)
T COG1198 417 LERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERI 496 (730)
T ss_pred HhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHH
Confidence 43 44788888865432 566
Q ss_pred HHHHHHc--CCceeeccCCCCHHH--HHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEcCCC------------C
Q 003881 487 ESQLAQK--GFKAAALHGDKDQAS--RMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIAR------------D 550 (789)
Q Consensus 487 ~~~L~~~--g~~v~~lhg~~~~~e--R~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~------------s 550 (789)
++.|.+. +.++..+.++.+... -+..+..|.+|+.+|||.|++++.|+|+|+++.|...|... .
T Consensus 497 eeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~ 576 (730)
T COG1198 497 EEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERT 576 (730)
T ss_pred HHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHH
Confidence 6666554 677888888877543 56889999999999999999999999999999988766543 2
Q ss_pred HHHHHHHHhhcCCCCCCCcEEEEEEccccHHHH
Q 003881 551 MDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFA 583 (789)
Q Consensus 551 ~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~ 583 (789)
..-+.|-.||+||.+ +.|.+++-.-..+...+
T Consensus 577 fqll~QvaGRAgR~~-~~G~VvIQT~~P~hp~i 608 (730)
T COG1198 577 FQLLMQVAGRAGRAG-KPGEVVIQTYNPDHPAI 608 (730)
T ss_pred HHHHHHHHhhhccCC-CCCeEEEEeCCCCcHHH
Confidence 445678889999998 67888877665554433
No 127
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.82 E-value=8e-19 Score=175.79 Aligned_cols=187 Identities=41% Similarity=0.627 Sum_probs=157.2
Q ss_pred cCCCCCcHHHHHHHHHHHcC-CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHH
Q 003881 243 QGYEKPTSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 243 ~g~~~ptpiQ~~~i~~il~g-rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~ 321 (789)
.++..|+++|.+++..++.. +.++++++||+|||.+++++++.++.... ..++||++|++.++.||...+..+
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~------~~~~l~~~p~~~~~~~~~~~~~~~ 77 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK------GKRVLVLVPTRELAEQWAEELKKL 77 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC------CCcEEEEeCCHHHHHHHHHHHHHH
Confidence 45678999999999999999 99999999999999998888888775432 356999999999999999999988
Q ss_pred hhhcCCeEEEEECCCChHHHHHHHhcCC-cEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhc
Q 003881 322 AKSHGIRVSAVYGGMSKLDQFKELKAGC-EIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI 400 (789)
Q Consensus 322 ~~~~~i~v~~~~gg~~~~~~~~~l~~~~-dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l 400 (789)
+..........+++......+..+..+. +|+++|++.|.+.+.........+.+|||||+|.+....+...+..++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~ 157 (201)
T smart00487 78 GPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL 157 (201)
T ss_pred hccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC
Confidence 7654445566666666566666666666 999999999999998766677889999999999998767888888898888
Q ss_pred CCCceEEEEeccCcHHHHHHHHHHhCCCeEEeecc
Q 003881 401 RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGE 435 (789)
Q Consensus 401 ~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~ 435 (789)
++..+++++|||+++.....+..++.+...+....
T Consensus 158 ~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 158 PKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred CccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 88899999999999999999999888777666543
No 128
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.82 E-value=7.5e-19 Score=207.41 Aligned_cols=148 Identities=22% Similarity=0.336 Sum_probs=127.3
Q ss_pred cccHHHHHHhcCCCCC-CCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhc
Q 003881 454 AEKLPWLLEKLPGMID-DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAAR 532 (789)
Q Consensus 454 ~~k~~~L~~~L~~~~~-~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~r 532 (789)
..++..|++.|..... +.++||||+++..++.|+..|...++.+..+||++++.+|..++..|+.|.+.|||||+++++
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~r 508 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLRE 508 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhC
Confidence 3456677777765543 458999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccEEEEEcC-----CCCHHHHHHHHhhcCCCCCCCcEEEEEEcc---------ccHHHHHHHHHHHHHcCCCcc
Q 003881 533 GLDIKSIKSVVNFDI-----ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ---------KEARFAGELVNSLIAAGQNVS 598 (789)
Q Consensus 533 GlDI~~v~~VI~~d~-----p~s~~~yiQriGR~gR~G~k~G~~i~lv~~---------~d~~~~~~lv~~l~~~~q~vp 598 (789)
|+|+|++++||++|. |.+...|+||+||+||. ..|.|++|++. .+....+++...+......+|
T Consensus 509 Gfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~--~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 586 (652)
T PRK05298 509 GLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN--VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITP 586 (652)
T ss_pred CccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC--CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCC
Confidence 999999999999885 78999999999999995 47999999984 355556666666777777777
Q ss_pred HHHHH
Q 003881 599 MELMD 603 (789)
Q Consensus 599 ~~l~~ 603 (789)
.....
T Consensus 587 ~~~~~ 591 (652)
T PRK05298 587 KTIKK 591 (652)
T ss_pred hhHHH
Confidence 76644
No 129
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.82 E-value=2.6e-18 Score=184.05 Aligned_cols=316 Identities=16% Similarity=0.200 Sum_probs=215.5
Q ss_pred CCCCcHHHHHHHHHHH-cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhh
Q 003881 245 YEKPTSIQCQALPIIL-SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (789)
Q Consensus 245 ~~~ptpiQ~~~i~~il-~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~ 323 (789)
+..+.|+|.+++...+ .|-.+|+..+||.|||++++..+-.+... .| .|||||. .|-..|.+.+.+|+.
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraE--------wp-lliVcPA-svrftWa~al~r~lp 265 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAE--------WP-LLIVCPA-SVRFTWAKALNRFLP 265 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhc--------Cc-EEEEecH-HHhHHHHHHHHHhcc
Confidence 3457799999998876 56789999999999999976555444433 34 5999998 566689999999987
Q ss_pred hcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcCCC
Q 003881 324 SHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD 403 (789)
Q Consensus 324 ~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~ 403 (789)
.... +.++.++..... .+.....|.|.+++.|..+-. .+.-..+.+||+||+|.+.+.. ...+..++..+..-
T Consensus 266 s~~p-i~vv~~~~D~~~---~~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~a 338 (689)
T KOG1000|consen 266 SIHP-IFVVDKSSDPLP---DVCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVA 338 (689)
T ss_pred cccc-eEEEecccCCcc---ccccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhccc-hhhhhhhhhHHHHh
Confidence 5433 444555443321 223346799999998865432 2334458899999999887753 23355555555556
Q ss_pred ceEEEEeccCc-------------------HHHHHHHHHHhCCC-eEEeecccc--------------------------
Q 003881 404 RQTLLFSATMP-------------------RKVEKLAREILSDP-VRVTVGEVG-------------------------- 437 (789)
Q Consensus 404 ~q~ll~SAT~~-------------------~~i~~l~~~~l~~p-~~i~i~~~~-------------------------- 437 (789)
.++|++|.|+. ++..+++..||..- +.+.....+
T Consensus 339 khvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~ 418 (689)
T KOG1000|consen 339 KHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLK 418 (689)
T ss_pred hheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67899999962 12233344444321 111100000
Q ss_pred CcccceeEEEEecCC-------------------------------------CcccHHHHHHhcCC-----CCCCCCEEE
Q 003881 438 MANEDITQVVHVIPS-------------------------------------DAEKLPWLLEKLPG-----MIDDGDVLV 475 (789)
Q Consensus 438 ~~~~~i~q~~~~~~~-------------------------------------~~~k~~~L~~~L~~-----~~~~~kvLV 475 (789)
...+. .+.+.++.. ...|...+.+.|.. .....+.||
T Consensus 419 qLPpK-rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflV 497 (689)
T KOG1000|consen 419 QLPPK-RREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLV 497 (689)
T ss_pred hCCcc-ceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEE
Confidence 01111 222222211 01122223333322 112348999
Q ss_pred EecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcC-Ccce-EEeehhhhccCCCCCccEEEEEcCCCCHHH
Q 003881 476 FASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSG-VYHV-LIATDVAARGLDIKSIKSVVNFDIARDMDM 553 (789)
Q Consensus 476 F~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G-~~~V-LVaT~v~~rGlDI~~v~~VI~~d~p~s~~~ 553 (789)
||.-....+.|...+.+.++....|.|..+..+|....+.|+.. ++.| +++-.+++.||++..++.||+..++|||..
T Consensus 498 FaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgv 577 (689)
T KOG1000|consen 498 FAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGV 577 (689)
T ss_pred EehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCce
Confidence 99999999999999999999999999999999999999999875 4444 556688899999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCcEEEEEEccc
Q 003881 554 HVHRIGRTGRAGDKDGTAYTLVTQK 578 (789)
Q Consensus 554 yiQriGR~gR~G~k~G~~i~lv~~~ 578 (789)
.+|.-.|++|.|++..+-+.++..+
T Consensus 578 LlQAEDRaHRiGQkssV~v~ylvAK 602 (689)
T KOG1000|consen 578 LLQAEDRAHRIGQKSSVFVQYLVAK 602 (689)
T ss_pred EEechhhhhhccccceeeEEEEEec
Confidence 9999999999998777665555443
No 130
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.81 E-value=4.7e-18 Score=201.35 Aligned_cols=299 Identities=17% Similarity=0.163 Sum_probs=180.6
Q ss_pred CcHHHHHHHHHHH----c------CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHH
Q 003881 248 PTSIQCQALPIIL----S------GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLE 317 (789)
Q Consensus 248 ptpiQ~~~i~~il----~------grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~ 317 (789)
++++|..|+..++ . .+..|++.+||||||++++..+ ..++.. ...+++|||+|+.+|..||.+.
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la-~~l~~~-----~~~~~vl~lvdR~~L~~Q~~~~ 312 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAA-RKALEL-----LKNPKVFFVVDRRELDYQLMKE 312 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHH-HHHHhh-----cCCCeEEEEECcHHHHHHHHHH
Confidence 7899999998764 2 2579999999999998755444 333321 3468899999999999999999
Q ss_pred HHHHhhhcCCeEEEEECCCChHHHHHHHhc-CCcEEEeChHHHHHHHhhc--ccccCc-eeEEEEeccchhccCCChHHH
Q 003881 318 TKKFAKSHGIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMK--ALTMSR-VTYLVLDEADRMFDLGFEPQI 393 (789)
Q Consensus 318 ~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~-~~dIiV~Tp~~L~~~l~~~--~~~l~~-i~~lVvDEah~m~~~~f~~~i 393 (789)
+..+... . .....+.......+.. ...|+|+|.+.|...+... .+...+ --+||+||||+.... .+
T Consensus 313 f~~~~~~----~--~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~----~~ 382 (667)
T TIGR00348 313 FQSLQKD----C--AERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG----EL 382 (667)
T ss_pred HHhhCCC----C--CcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch----HH
Confidence 9988531 1 1111122222223332 3689999999998644321 111111 128999999985432 23
Q ss_pred HHHHhhcCCCceEEEEeccCcHHHHHHHHHHh----CCCeEEeeccccCcccceeEEE--Ee------cCCC--------
Q 003881 394 RSIVGQIRPDRQTLLFSATMPRKVEKLAREIL----SDPVRVTVGEVGMANEDITQVV--HV------IPSD-------- 453 (789)
Q Consensus 394 ~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l----~~p~~i~i~~~~~~~~~i~q~~--~~------~~~~-------- 453 (789)
...+...-++...++||||+-..........+ ++++..+.- ...........+ .. +...
T Consensus 383 ~~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~-~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~ 461 (667)
T TIGR00348 383 AKNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFI-TDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDE 461 (667)
T ss_pred HHHHHhhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeH-HHHhhcCCeeeEEEEecchhhccChHHHHHHHHH
Confidence 33343233467899999998532111111111 122111100 000000000000 00 0000
Q ss_pred ------------------------------cccHHH----HHHhcCCCC--CCCCEEEEecccccHHHHHHHHHHc----
Q 003881 454 ------------------------------AEKLPW----LLEKLPGMI--DDGDVLVFASKKTTVDEIESQLAQK---- 493 (789)
Q Consensus 454 ------------------------------~~k~~~----L~~~L~~~~--~~~kvLVF~~s~~~a~~l~~~L~~~---- 493 (789)
...... +++.+.... ..++.+|||.++..|..+.+.|.+.
T Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~ 541 (667)
T TIGR00348 462 IFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEK 541 (667)
T ss_pred HHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccc
Confidence 000001 111111111 1379999999999999999988664
Q ss_pred -CCceeeccCCCCHH---------------------HHHHHHHHhhc-CCcceEEeehhhhccCCCCCccEEEEEcCCCC
Q 003881 494 -GFKAAALHGDKDQA---------------------SRMEILQKFKS-GVYHVLIATDVAARGLDIKSIKSVVNFDIARD 550 (789)
Q Consensus 494 -g~~v~~lhg~~~~~---------------------eR~~~l~~F~~-G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s 550 (789)
+...+++++..... ....++++|++ +..+|||+++++..|+|.|.+++++...+-.+
T Consensus 542 ~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~ 621 (667)
T TIGR00348 542 FEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY 621 (667)
T ss_pred cCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccccc
Confidence 24456666654332 23478899976 68899999999999999999999997776665
Q ss_pred HHHHHHHHhhcCCC
Q 003881 551 MDMHVHRIGRTGRA 564 (789)
Q Consensus 551 ~~~yiQriGR~gR~ 564 (789)
..++|.+||+.|.
T Consensus 622 -h~LlQai~R~nR~ 634 (667)
T TIGR00348 622 -HGLLQAIARTNRI 634 (667)
T ss_pred -cHHHHHHHHhccc
Confidence 4589999999994
No 131
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=5.8e-18 Score=193.59 Aligned_cols=316 Identities=21% Similarity=0.239 Sum_probs=215.3
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003881 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~ 325 (789)
..|++.|.-+.-.+++| -|....||.|||+++++|++...+. |..|.||+|+.-||.|-++++..++..+
T Consensus 77 ~r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL~--------G~~VhvvT~NdyLA~RDae~m~~ly~~L 146 (764)
T PRK12326 77 LRPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYALQ--------GRRVHVITVNDYLARRDAEWMGPLYEAL 146 (764)
T ss_pred CCcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHHc--------CCCeEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 36888999888888877 4778999999999999999877643 5668999999999999999999999999
Q ss_pred CCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHH-HHHhh------cccccCceeEEEEeccchhc-cC----------
Q 003881 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLI-DMLKM------KALTMSRVTYLVLDEADRMF-DL---------- 387 (789)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~-~~l~~------~~~~l~~i~~lVvDEah~m~-~~---------- 387 (789)
|+++.++.++.+..+. +... .|||+.+|..-|- ++|+. .......+.++||||+|.|+ |.
T Consensus 147 GLsvg~i~~~~~~~er-r~aY-~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~ 224 (764)
T PRK12326 147 GLTVGWITEESTPEER-RAAY-ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGS 224 (764)
T ss_pred CCEEEEECCCCCHHHH-HHHH-cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCC
Confidence 9999999888765543 3333 4999999987652 22221 22335668999999999763 10
Q ss_pred ----CChHHHHHHHhhcCCC------------------------------------------------------------
Q 003881 388 ----GFEPQIRSIVGQIRPD------------------------------------------------------------ 403 (789)
Q Consensus 388 ----~f~~~i~~il~~l~~~------------------------------------------------------------ 403 (789)
.....+..+...+...
T Consensus 225 ~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dY 304 (764)
T PRK12326 225 TPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHY 304 (764)
T ss_pred CcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcE
Confidence 0111122222222110
Q ss_pred ----------------------------------------------------------ceEEEEeccCcHHHHHHHHHHh
Q 003881 404 ----------------------------------------------------------RQTLLFSATMPRKVEKLAREIL 425 (789)
Q Consensus 404 ----------------------------------------------------------~q~ll~SAT~~~~i~~l~~~~l 425 (789)
..+.+||.|......++..- +
T Consensus 305 iV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~i-Y 383 (764)
T PRK12326 305 IVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQF-Y 383 (764)
T ss_pred EEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHH-h
Confidence 12344444443332222222 2
Q ss_pred CCCeEEeeccccCcccceeEEEEecCCCcccHHHHHHhcCCCC-CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCC
Q 003881 426 SDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDK 504 (789)
Q Consensus 426 ~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~ 504 (789)
+-++.+.....+....+. .-.+......|+..+++.+.+.. .+.+|||.+.+....+.|+..|.+.++++.+|+..-
T Consensus 384 ~l~Vv~IPtnkp~~R~d~--~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~ 461 (764)
T PRK12326 384 DLGVSVIPPNKPNIREDE--ADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKN 461 (764)
T ss_pred CCcEEECCCCCCceeecC--CCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCc
Confidence 222211111111111111 11222234567777777765543 455999999999999999999999999999999875
Q ss_pred CHHHHHHHHHHhhcC-CcceEEeehhhhccCCCC---------------CccEEEEEcCCCCHHHHHHHHhhcCCCCCCC
Q 003881 505 DQASRMEILQKFKSG-VYHVLIATDVAARGLDIK---------------SIKSVVNFDIARDMDMHVHRIGRTGRAGDKD 568 (789)
Q Consensus 505 ~~~eR~~~l~~F~~G-~~~VLVaT~v~~rGlDI~---------------~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~ 568 (789)
...+ ..++. ..| .-.|-|||++|+||.||. +--|||-...+.|.---.|-.||+||.| .+
T Consensus 462 ~~~E-A~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQG-Dp 537 (764)
T PRK12326 462 DAEE-ARIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQG-DP 537 (764)
T ss_pred hHhH-HHHHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCC-CC
Confidence 4433 23332 234 346999999999999997 3348999999999999999999999999 68
Q ss_pred cEEEEEEccccH
Q 003881 569 GTAYTLVTQKEA 580 (789)
Q Consensus 569 G~~i~lv~~~d~ 580 (789)
|.+..|++-+|.
T Consensus 538 Gss~f~lSleDd 549 (764)
T PRK12326 538 GSSVFFVSLEDD 549 (764)
T ss_pred CceeEEEEcchh
Confidence 999999887654
No 132
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.80 E-value=9.9e-19 Score=199.16 Aligned_cols=297 Identities=20% Similarity=0.240 Sum_probs=193.4
Q ss_pred CCCcHHHHHHHHHHH----cC-CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHH
Q 003881 246 EKPTSIQCQALPIIL----SG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK 320 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il----~g-rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~ 320 (789)
..|+.+|..||..+. .| +.+|+++.||+|||.+ .+.++..|++. +.-.++|+|+-++.|+.|.+..+..
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrT-Aiaii~rL~r~-----~~~KRVLFLaDR~~Lv~QA~~af~~ 237 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRT-AIAIIDRLIKS-----GWVKRVLFLADRNALVDQAYGAFED 237 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCccee-HHHHHHHHHhc-----chhheeeEEechHHHHHHHHHHHHH
Confidence 458999999998765 33 4599999999999986 45556666554 3356799999999999999999888
Q ss_pred HhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhc-----ccccCceeEEEEeccchhccCCChHHHHH
Q 003881 321 FAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK-----ALTMSRVTYLVLDEADRMFDLGFEPQIRS 395 (789)
Q Consensus 321 ~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~-----~~~l~~i~~lVvDEah~m~~~~f~~~i~~ 395 (789)
+.... -.+..+.+-... ..++|.|+|+..+...+... .+....+++||||||||-. ......
T Consensus 238 ~~P~~-~~~n~i~~~~~~--------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----~~~~~~ 304 (875)
T COG4096 238 FLPFG-TKMNKIEDKKGD--------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----YSEWSS 304 (875)
T ss_pred hCCCc-cceeeeecccCC--------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----HhhhHH
Confidence 87632 222222221111 14899999999999888654 2334568999999999833 333445
Q ss_pred HHhhcCCCceEEEEeccCcHHHHHHHHHHh-CCCeEEeecc----------------------ccCcccc----------
Q 003881 396 IVGQIRPDRQTLLFSATMPRKVEKLAREIL-SDPVRVTVGE----------------------VGMANED---------- 442 (789)
Q Consensus 396 il~~l~~~~q~ll~SAT~~~~i~~l~~~~l-~~p~~i~i~~----------------------~~~~~~~---------- 442 (789)
|+.++..-+ ++++||+...+..-.-.|+ +.|+..+--. .+.....
T Consensus 305 I~dYFdA~~--~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~ 382 (875)
T COG4096 305 ILDYFDAAT--QGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGE 382 (875)
T ss_pred HHHHHHHHH--HhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhcc
Confidence 555554333 3449998664433333333 3333221100 0000000
Q ss_pred -e---eEEEEecC--------CCcc-cHHHHHHhcCCCC---CCCCEEEEecccccHHHHHHHHHHc-----CCceeecc
Q 003881 443 -I---TQVVHVIP--------SDAE-KLPWLLEKLPGMI---DDGDVLVFASKKTTVDEIESQLAQK-----GFKAAALH 501 (789)
Q Consensus 443 -i---~q~~~~~~--------~~~~-k~~~L~~~L~~~~---~~~kvLVF~~s~~~a~~l~~~L~~~-----g~~v~~lh 501 (789)
+ .+.+...+ .... -...|.+.+.... .-+|+||||.+..+|+.+...|... +--+..|.
T Consensus 383 ~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT 462 (875)
T COG4096 383 AIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKIT 462 (875)
T ss_pred ccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEe
Confidence 0 00000000 0000 0122333444311 1358999999999999999999764 34477788
Q ss_pred CCCCHHHHHHHHHHhhc--CCcceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCC
Q 003881 502 GDKDQASRMEILQKFKS--GVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG 565 (789)
Q Consensus 502 g~~~~~eR~~~l~~F~~--G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G 565 (789)
|+-.+.++ .+..|.. .--+|.|+.+++..|+|+|.|..+|++-.-.|..-|.|++||.-|.-
T Consensus 463 ~d~~~~q~--~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~ 526 (875)
T COG4096 463 GDAEQAQA--LIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLC 526 (875)
T ss_pred ccchhhHH--HHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccC
Confidence 87665543 3566644 34567888899999999999999999999999999999999999975
No 133
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.78 E-value=3.2e-17 Score=177.97 Aligned_cols=165 Identities=24% Similarity=0.354 Sum_probs=126.9
Q ss_pred CceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHHHHHhcCCCC-CCCCEEEEecccc
Q 003881 403 DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKT 481 (789)
Q Consensus 403 ~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~ 481 (789)
..|+|++|||+.+.-.+... ++-+.-.+...+...+.|. +- ........|+..+.... .+.++||-+-|++
T Consensus 386 ~~q~i~VSATPg~~E~e~s~---~~vveQiIRPTGLlDP~ie----vR-p~~~QvdDL~~EI~~r~~~~eRvLVTtLTKk 457 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSG---GNVVEQIIRPTGLLDPEIE----VR-PTKGQVDDLLSEIRKRVAKNERVLVTTLTKK 457 (663)
T ss_pred cCCEEEEECCCChHHHHhcc---CceeEEeecCCCCCCCcee----ee-cCCCcHHHHHHHHHHHHhcCCeEEEEeehHH
Confidence 36999999998654221111 1222223333333333222 11 23445666766665533 4569999999999
Q ss_pred cHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEcCC-----CCHHHHHH
Q 003881 482 TVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIA-----RDMDMHVH 556 (789)
Q Consensus 482 ~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p-----~s~~~yiQ 556 (789)
+++.|.++|.+.|+++..+|++...-+|.+++..++.|.++|||.-+.+-+|||||.|.+|.++|.. .+-...+|
T Consensus 458 mAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQ 537 (663)
T COG0556 458 MAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQ 537 (663)
T ss_pred HHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999864 47888899
Q ss_pred HHhhcCCCCCCCcEEEEEEcc
Q 003881 557 RIGRTGRAGDKDGTAYTLVTQ 577 (789)
Q Consensus 557 riGR~gR~G~k~G~~i~lv~~ 577 (789)
-|||+.|.- .|.++++...
T Consensus 538 tIGRAARN~--~GkvIlYAD~ 556 (663)
T COG0556 538 TIGRAARNV--NGKVILYADK 556 (663)
T ss_pred HHHHHhhcc--CCeEEEEchh
Confidence 999999975 6888877654
No 134
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=2.5e-17 Score=192.70 Aligned_cols=316 Identities=18% Similarity=0.219 Sum_probs=209.5
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003881 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (789)
Q Consensus 247 ~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~ 326 (789)
.|+++|.-+--.+ .+.-|..+.||.|||+++++|++...+. |..|.||+||.-||.|-++++..++..+|
T Consensus 82 ~~ydVQliGg~~L--h~G~iaEM~TGEGKTLvA~l~a~l~al~--------G~~VhvvT~ndyLA~RD~e~m~~l~~~lG 151 (913)
T PRK13103 82 RHFDVQLIGGMTL--HEGKIAEMRTGEGKTLVGTLAVYLNALS--------GKGVHVVTVNDYLARRDANWMRPLYEFLG 151 (913)
T ss_pred CcchhHHHhhhHh--ccCccccccCCCCChHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 5666666554444 4557889999999999999999876643 66689999999999999999999999999
Q ss_pred CeEEEEECCCChHHHHHHHhcCCcEEEeChHHH-HHHHhhc------ccccCceeEEEEeccchhc-cCC----------
Q 003881 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMK------ALTMSRVTYLVLDEADRMF-DLG---------- 388 (789)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L-~~~l~~~------~~~l~~i~~lVvDEah~m~-~~~---------- 388 (789)
++|.++.++.+..+....+ .++|+++|..-| .+.|..+ ......+.++||||+|.|+ |..
T Consensus 152 l~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~~ 229 (913)
T PRK13103 152 LSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQA 229 (913)
T ss_pred CEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecCCC
Confidence 9999998877655443332 399999999886 3333222 2234778999999999763 100
Q ss_pred -----ChHHHHHHHhhcCC--------------------C----------------------------------------
Q 003881 389 -----FEPQIRSIVGQIRP--------------------D---------------------------------------- 403 (789)
Q Consensus 389 -----f~~~i~~il~~l~~--------------------~---------------------------------------- 403 (789)
....+..++..+.. .
T Consensus 230 ~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~ 309 (913)
T PRK13103 230 EDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTH 309 (913)
T ss_pred ccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHHH
Confidence 11111122221100 0
Q ss_pred ---------------------------------------------------------------------------ceEEE
Q 003881 404 ---------------------------------------------------------------------------RQTLL 408 (789)
Q Consensus 404 ---------------------------------------------------------------------------~q~ll 408 (789)
.++.+
T Consensus 310 i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsG 389 (913)
T PRK13103 310 VYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSG 389 (913)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhcc
Confidence 11222
Q ss_pred EeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHHHHHhcCCCCC-CCCEEEEecccccHHHHH
Q 003881 409 FSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMID-DGDVLVFASKKTTVDEIE 487 (789)
Q Consensus 409 ~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~-~~kvLVF~~s~~~a~~l~ 487 (789)
||.|......+ +..+++-++.+.....+....+... .++.....|+..+++.+..... +.+|||-+.+....+.|+
T Consensus 390 MTGTa~te~~E-f~~iY~l~Vv~IPTnkP~~R~D~~d--~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls 466 (913)
T PRK13103 390 MTGTADTEAFE-FRQIYGLDVVVIPPNKPLARKDFND--LVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMS 466 (913)
T ss_pred CCCCCHHHHHH-HHHHhCCCEEECCCCCCcccccCCC--eEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHH
Confidence 23332211111 1111111111111111111111111 1223445788888777765443 459999999999999999
Q ss_pred HHHHHcCCceeeccCCCCHHHHHHHHHHhhcC-CcceEEeehhhhccCCCC-----------------------------
Q 003881 488 SQLAQKGFKAAALHGDKDQASRMEILQKFKSG-VYHVLIATDVAARGLDIK----------------------------- 537 (789)
Q Consensus 488 ~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G-~~~VLVaT~v~~rGlDI~----------------------------- 537 (789)
..|.+.+++..+|+......+-. ++. ..| .-.|-|||++|+||.||.
T Consensus 467 ~~L~~~gi~h~VLNAk~~~~EA~-IIa--~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (913)
T PRK13103 467 NLLKKEGIEHKVLNAKYHEKEAE-IIA--QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQK 543 (913)
T ss_pred HHHHHcCCcHHHhccccchhHHH-HHH--cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHh
Confidence 99999999999988865433322 222 345 346999999999999995
Q ss_pred --------CccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHH
Q 003881 538 --------SIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581 (789)
Q Consensus 538 --------~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~ 581 (789)
+--+||--..+.|.---.|-.||+||.| .+|.+-.|++-+|.-
T Consensus 544 ~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQG-DPGsS~f~lSlED~L 594 (913)
T PRK13103 544 RHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQG-DPGSSRFYLSLEDSL 594 (913)
T ss_pred HHHHHHHcCCCEEEeeccCchHHHHHHhccccccCC-CCCceEEEEEcCcHH
Confidence 3347888888999988999999999999 689999999887653
No 135
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.75 E-value=4e-16 Score=188.15 Aligned_cols=327 Identities=19% Similarity=0.242 Sum_probs=204.1
Q ss_pred CCCCCcHHHHHHHHHHH----cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHH-HHHH
Q 003881 244 GYEKPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI-YLET 318 (789)
Q Consensus 244 g~~~ptpiQ~~~i~~il----~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi-~~~~ 318 (789)
+| .+++-|.+.+..+. .+..+++.|+||+|||++|++|++.+. .+.++||++||++|+.|+ ...+
T Consensus 243 ~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~---------~~~~vvI~t~T~~Lq~Ql~~~~i 312 (820)
T PRK07246 243 GL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS---------DQRQIIVSVPTKILQDQIMAEEV 312 (820)
T ss_pred CC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc---------CCCcEEEEeCcHHHHHHHHHHHH
Confidence 44 68999999665554 567899999999999999999988763 246799999999999999 4778
Q ss_pred HHHhhhcCCeEEEEECCCChH-----HH------------------------------------------HHHH------
Q 003881 319 KKFAKSHGIRVSAVYGGMSKL-----DQ------------------------------------------FKEL------ 345 (789)
Q Consensus 319 ~~~~~~~~i~v~~~~gg~~~~-----~~------------------------------------------~~~l------ 345 (789)
..+.+.+++++.++.|+...- .+ +..+
T Consensus 313 ~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~ 392 (820)
T PRK07246 313 KAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNL 392 (820)
T ss_pred HHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCC
Confidence 877777788888777765311 00 0000
Q ss_pred ------------------hcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCC-----C-------hH----
Q 003881 346 ------------------KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG-----F-------EP---- 391 (789)
Q Consensus 346 ------------------~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~-----f-------~~---- 391 (789)
...+||||+.+.-|...+.... .+...++|||||||++.+.. . ..
T Consensus 393 ~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~ 471 (820)
T PRK07246 393 SQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQK 471 (820)
T ss_pred CCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHH
Confidence 1127999999998887664443 36789999999999874310 0 00
Q ss_pred ------------------------------------------H----H-----------HHHHhh------c--------
Q 003881 392 ------------------------------------------Q----I-----------RSIVGQ------I-------- 400 (789)
Q Consensus 392 ------------------------------------------~----i-----------~~il~~------l-------- 400 (789)
. + ..++.. +
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~ 551 (820)
T PRK07246 472 ALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEK 551 (820)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCc
Confidence 0 0 000000 0
Q ss_pred -------------------CCCceEEEEeccCc--HHHHHHHHHHhCCC--eEEeeccccCcccceeEEEEec----CCC
Q 003881 401 -------------------RPDRQTLLFSATMP--RKVEKLAREILSDP--VRVTVGEVGMANEDITQVVHVI----PSD 453 (789)
Q Consensus 401 -------------------~~~~q~ll~SAT~~--~~i~~l~~~~l~~p--~~i~i~~~~~~~~~i~q~~~~~----~~~ 453 (789)
+....+|++|||++ +.. .+ ...++-. ....+ ..... .+...++ +..
T Consensus 552 ~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f-~~-~~~lGl~~~~~~~~---~~~~~--~~~~~~i~~~~p~~ 624 (820)
T PRK07246 552 RVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRV-SL-ADLLGFEEYLFHKI---EKDKK--QDQLVVVDQDMPLV 624 (820)
T ss_pred ceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCC-cH-HHHcCCCccceecC---CCChH--HccEEEeCCCCCCC
Confidence 01136788888885 222 23 2222311 11111 11111 1112221 211
Q ss_pred -----cccHHHHHHhcCCC-CCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEee
Q 003881 454 -----AEKLPWLLEKLPGM-IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT 527 (789)
Q Consensus 454 -----~~k~~~L~~~L~~~-~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT 527 (789)
..-...+.+.+... ...+++||+++++...+.++..|....+.+ ...|... .+..++++|+++...||++|
T Consensus 625 ~~~~~~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~ 701 (820)
T PRK07246 625 TETSDEVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGL 701 (820)
T ss_pred CCCChHHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEec
Confidence 11112233322211 246899999999999999999997665554 5555322 25668999999888999999
Q ss_pred hhhhccCCCCC--ccEEEEEcCCC----C--------------------------HHHHHHHHhhcCCCCCCCcEEEEEE
Q 003881 528 DVAARGLDIKS--IKSVVNFDIAR----D--------------------------MDMHVHRIGRTGRAGDKDGTAYTLV 575 (789)
Q Consensus 528 ~v~~rGlDI~~--v~~VI~~d~p~----s--------------------------~~~yiQriGR~gR~G~k~G~~i~lv 575 (789)
..+.+|+|+|+ ...||+..+|. + +..+.|.+||.-|.-...|+++++-
T Consensus 702 ~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD 781 (820)
T PRK07246 702 GSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILD 781 (820)
T ss_pred chhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEEC
Confidence 99999999974 56667655552 2 2223599999999874456554443
Q ss_pred cc-ccHHHHHHHHHHHH
Q 003881 576 TQ-KEARFAGELVNSLI 591 (789)
Q Consensus 576 ~~-~d~~~~~~lv~~l~ 591 (789)
.. ....+-+.+++.|-
T Consensus 782 ~R~~~k~Yg~~~l~sLP 798 (820)
T PRK07246 782 RRILTKSYGKQILASLA 798 (820)
T ss_pred CcccccHHHHHHHHhCC
Confidence 33 23455566666664
No 136
>COG4889 Predicted helicase [General function prediction only]
Probab=99.74 E-value=1.8e-17 Score=186.71 Aligned_cols=359 Identities=19% Similarity=0.213 Sum_probs=214.2
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC----CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCe
Q 003881 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG----RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPI 300 (789)
Q Consensus 225 ~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~g----rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~ 300 (789)
..|+.+.. .++..+|.-..-.+|+|+|++|+...+.| ...=+++.+|+|||...+ -+...+. ..+
T Consensus 140 IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsL-kisEala---------~~~ 208 (1518)
T COG4889 140 IDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSL-KISEALA---------AAR 208 (1518)
T ss_pred CChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHH-HHHHHHh---------hhh
Confidence 34554433 45555665556679999999999999866 234556678999998744 3444442 255
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHH--------------------HHHHH-----hcCCcEEEeC
Q 003881 301 GVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD--------------------QFKEL-----KAGCEIVIAT 355 (789)
Q Consensus 301 vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~--------------------~~~~l-----~~~~dIiV~T 355 (789)
+|+|+|+..|..|..+++..-. ...++...++....... .+..+ ..+--||++|
T Consensus 209 iL~LvPSIsLLsQTlrew~~~~-~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsT 287 (1518)
T COG4889 209 ILFLVPSISLLSQTLREWTAQK-ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFST 287 (1518)
T ss_pred eEeecchHHHHHHHHHHHhhcc-CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEc
Confidence 8999999999999876665432 23566666665442211 11111 1246799999
Q ss_pred hHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcC-----CCceEEEEeccCcH---HH----------
Q 003881 356 PGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR-----PDRQTLLFSATMPR---KV---------- 417 (789)
Q Consensus 356 p~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~-----~~~q~ll~SAT~~~---~i---------- 417 (789)
++.|..+-+.....+..+++||+|||||-........-...+.++. +..+.+.|+||+.- ..
T Consensus 288 YQSl~~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~ 367 (1518)
T COG4889 288 YQSLPRIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAE 367 (1518)
T ss_pred ccchHHHHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccce
Confidence 9999998888888899999999999998543211111111111111 12245788898631 11
Q ss_pred --------------------HHHHHHHhCCCeEEeeccccCcccceeEEEEecCC------CcccHHHHHHhcC-CC---
Q 003881 418 --------------------EKLAREILSDPVRVTVGEVGMANEDITQVVHVIPS------DAEKLPWLLEKLP-GM--- 467 (789)
Q Consensus 418 --------------------~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~------~~~k~~~L~~~L~-~~--- 467 (789)
+.+.+.++.+...+.............|....-++ +..|+.-...-|. +.
T Consensus 368 l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~ 447 (1518)
T COG4889 368 LSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGED 447 (1518)
T ss_pred eeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhcccc
Confidence 11122233333222211111111111111111111 0111111111111 10
Q ss_pred ------CCC----CCEEEEecccccHHHHHHHHHHc---------------CCceeeccCCCCHHHHHHHHH---HhhcC
Q 003881 468 ------IDD----GDVLVFASKKTTVDEIESQLAQK---------------GFKAAALHGDKDQASRMEILQ---KFKSG 519 (789)
Q Consensus 468 ------~~~----~kvLVF~~s~~~a~~l~~~L~~~---------------g~~v~~lhg~~~~~eR~~~l~---~F~~G 519 (789)
... .+.|-||.+.++...+++.+.+- .+.+..+.|.|...+|...+. .|...
T Consensus 448 n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~n 527 (1518)
T COG4889 448 NDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPN 527 (1518)
T ss_pred ccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcc
Confidence 001 15788999888877776665431 344566778999988855544 34567
Q ss_pred CcceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCC--CCCcEEEEEE-------------ccccHHHHH
Q 003881 520 VYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG--DKDGTAYTLV-------------TQKEARFAG 584 (789)
Q Consensus 520 ~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G--~k~G~~i~lv-------------~~~d~~~~~ 584 (789)
+++||--...+++|+|+|.++.||+|++-.++.+.+|.+||+.|-. .+.|..|+=+ ...+.+.+.
T Consensus 528 eckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIalpegi~p~~~l~~n~nFk~VW 607 (1518)
T COG4889 528 ECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIALPEGIKPLDELVNNTNFKNVW 607 (1518)
T ss_pred hheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEeccCCCCCchHHHhcCccHHHHH
Confidence 8999998999999999999999999999999999999999999965 2234333322 123445567
Q ss_pred HHHHHHHHcCC
Q 003881 585 ELVNSLIAAGQ 595 (789)
Q Consensus 585 ~lv~~l~~~~q 595 (789)
++++.|..+..
T Consensus 608 qVlnALRShD~ 618 (1518)
T COG4889 608 QVLKALRSHDE 618 (1518)
T ss_pred HHHHHHHhcCH
Confidence 77888876655
No 137
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.73 E-value=4.1e-18 Score=182.47 Aligned_cols=310 Identities=18% Similarity=0.236 Sum_probs=206.1
Q ss_pred CCCcHHHHHHHHHHHc-C--CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHh
Q 003881 246 EKPTSIQCQALPIILS-G--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~-g--rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~ 322 (789)
..++|||..++..++- | |..||+.|+|+|||++-+.++ ..+ ...+||||.+-.-+.||...++.|+
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa-~ti----------kK~clvLcts~VSVeQWkqQfk~ws 369 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAA-CTI----------KKSCLVLCTSAVSVEQWKQQFKQWS 369 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeee-eee----------cccEEEEecCccCHHHHHHHHHhhc
Confidence 5789999999999983 3 689999999999998744433 333 3458999999999999999999998
Q ss_pred hhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhh--------cccccCceeEEEEeccchhccCCChHHHH
Q 003881 323 KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM--------KALTMSRVTYLVLDEADRMFDLGFEPQIR 394 (789)
Q Consensus 323 ~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~--------~~~~l~~i~~lVvDEah~m~~~~f~~~i~ 394 (789)
...+-.++.++...... ...++.|+|+|+..+..--++ ..+.-..|.++|+||+|.+-..-|...+.
T Consensus 370 ti~d~~i~rFTsd~Ke~-----~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVls 444 (776)
T KOG1123|consen 370 TIQDDQICRFTSDAKER-----FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLS 444 (776)
T ss_pred ccCccceEEeecccccc-----CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHH
Confidence 76666666666654332 235799999999877432211 12234568999999999876655665555
Q ss_pred HHHhhcCCCceEEEEeccCcHHHHHHHH-HHhCCCeEEeeccccCc----ccceeEEEEecCC-----------------
Q 003881 395 SIVGQIRPDRQTLLFSATMPRKVEKLAR-EILSDPVRVTVGEVGMA----NEDITQVVHVIPS----------------- 452 (789)
Q Consensus 395 ~il~~l~~~~q~ll~SAT~~~~i~~l~~-~~l~~p~~i~i~~~~~~----~~~i~q~~~~~~~----------------- 452 (789)
.+-.++. |+++||+-++-..+.. .|+-.|......-.... ...+...-++|+-
T Consensus 445 iv~aHcK-----LGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~ 519 (776)
T KOG1123|consen 445 IVQAHCK-----LGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRM 519 (776)
T ss_pred HHHHHhh-----ccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhh
Confidence 5555554 8999998554222211 12222211111000000 0111111122211
Q ss_pred -----CcccH---HHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcC-Ccce
Q 003881 453 -----DAEKL---PWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSG-VYHV 523 (789)
Q Consensus 453 -----~~~k~---~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G-~~~V 523 (789)
...|+ ..|+..-.+ .+.++|||....-.+...+-.|.+ -.|+|..+|.+|.++++.|+.+ .++.
T Consensus 520 lLyvMNP~KFraCqfLI~~HE~--RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNT 592 (776)
T KOG1123|consen 520 LLYVMNPNKFRACQFLIKFHER--RGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNT 592 (776)
T ss_pred eeeecCcchhHHHHHHHHHHHh--cCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccce
Confidence 12233 333333332 466999999887666666655533 3689999999999999999865 6788
Q ss_pred EEeehhhhccCCCCCccEEEEEcCC-CCHHHHHHHHhhcCCCCC-----CCcEEEEEEccccHHHH
Q 003881 524 LIATDVAARGLDIKSIKSVVNFDIA-RDMDMHVHRIGRTGRAGD-----KDGTAYTLVTQKEARFA 583 (789)
Q Consensus 524 LVaT~v~~rGlDI~~v~~VI~~d~p-~s~~~yiQriGR~gR~G~-----k~G~~i~lv~~~d~~~~ 583 (789)
+.-..++...+|+|.++++|....- .+-..-.||+||..|+-. -....|+|++..-.++.
T Consensus 593 IFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~ 658 (776)
T KOG1123|consen 593 IFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMY 658 (776)
T ss_pred EEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHH
Confidence 8888999999999999999987654 356677899999999751 12457788887654443
No 138
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.73 E-value=3.1e-17 Score=182.19 Aligned_cols=122 Identities=16% Similarity=0.277 Sum_probs=99.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhc--CCcc-eEEeehhhhccCCCCCccEEEEE
Q 003881 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKS--GVYH-VLIATDVAARGLDIKSIKSVVNF 545 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~--G~~~-VLVaT~v~~rGlDI~~v~~VI~~ 545 (789)
...+++|..+-...+..++..|.+.|+.+..+||.....+|..+++.|.. |..+ .||+-.+.+.|||+.+.+|+|..
T Consensus 745 skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilv 824 (901)
T KOG4439|consen 745 SKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILV 824 (901)
T ss_pred ccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEE
Confidence 34588888888888899999999999999999999999999999999954 4344 46667888999999999999999
Q ss_pred cCCCCHHHHHHHHhhcCCCCCCCcEE-EEEEccccHHHHHHHHHHHHHc
Q 003881 546 DIARDMDMHVHRIGRTGRAGDKDGTA-YTLVTQKEARFAGELVNSLIAA 593 (789)
Q Consensus 546 d~p~s~~~yiQriGR~gR~G~k~G~~-i~lv~~~d~~~~~~lv~~l~~~ 593 (789)
|+-|||.--.|.+.|+.|.|+++-+. +.|++..-. .+.+..|+..
T Consensus 825 DlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTv---EqrV~~LQdk 870 (901)
T KOG4439|consen 825 DLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTV---EQRVKSLQDK 870 (901)
T ss_pred ecccCHHHHHHHHHHHHHhcccCceEEEEEEecCcH---HHHHHHHHHH
Confidence 99999999999999999999665544 456665432 2344555443
No 139
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.72 E-value=2.2e-16 Score=180.46 Aligned_cols=159 Identities=18% Similarity=0.236 Sum_probs=115.4
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhh-hc
Q 003881 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK-SH 325 (789)
Q Consensus 247 ~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~-~~ 325 (789)
.|..+|.+.+..+-.+...+|+|||-+|||.+-...+ ..++.. .....+|+++||..|+.|+...+..... .+
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~i-EKVLRe-----sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAI-EKVLRE-----SDSDVVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHH-HHHHhh-----cCCCEEEEecchHHHhhhhhHHHHHhhccCc
Confidence 5788999999999999999999999999997644433 444332 3456789999999999999877776542 22
Q ss_pred CCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhh---cccccCceeEEEEeccchhccCCChHHHHHHHhhcCC
Q 003881 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM---KALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP 402 (789)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~---~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~ 402 (789)
-.+.+.+.|.....-++. .-.|.|+|+-|+.|..++.. ......++.++|+||+|.+.+..-.-.+..++..+
T Consensus 585 ~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li-- 660 (1330)
T KOG0949|consen 585 FLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI-- 660 (1330)
T ss_pred cccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--
Confidence 233344444333322222 12599999999999998876 44567899999999999988765454555565554
Q ss_pred CceEEEEeccCcH
Q 003881 403 DRQTLLFSATMPR 415 (789)
Q Consensus 403 ~~q~ll~SAT~~~ 415 (789)
.+.+|.+|||+-+
T Consensus 661 ~CP~L~LSATigN 673 (1330)
T KOG0949|consen 661 PCPFLVLSATIGN 673 (1330)
T ss_pred CCCeeEEecccCC
Confidence 3568999999743
No 140
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=1.6e-15 Score=175.83 Aligned_cols=315 Identities=19% Similarity=0.252 Sum_probs=209.6
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003881 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (789)
Q Consensus 247 ~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~ 326 (789)
.|++.|.-+.-.+..| -|..+.||-|||+++.+|+..+.+. |..|-||+..--||.-=.+++..+...+|
T Consensus 78 r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~--------GkgVhVVTvNdYLA~RDae~mg~vy~fLG 147 (925)
T PRK12903 78 RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALT--------GKGVIVSTVNEYLAERDAEEMGKVFNFLG 147 (925)
T ss_pred CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhc--------CCceEEEecchhhhhhhHHHHHHHHHHhC
Confidence 6778888777666655 5789999999999999998765533 44577888889999988899999999999
Q ss_pred CeEEEEECCCChHHHHHHHhcCCcEEEeChHHH-HHHHhhc------ccccCceeEEEEeccchhc-cCC----------
Q 003881 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMK------ALTMSRVTYLVLDEADRMF-DLG---------- 388 (789)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L-~~~l~~~------~~~l~~i~~lVvDEah~m~-~~~---------- 388 (789)
+.|.++..+....+.... -.|||+.+|..-| .++|+.+ ......+.|.||||+|.|+ |..
T Consensus 148 LsvG~i~~~~~~~~rr~a--Y~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~~ 225 (925)
T PRK12903 148 LSVGINKANMDPNLKREA--YACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQ 225 (925)
T ss_pred CceeeeCCCCChHHHHHh--ccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCCC
Confidence 999999887666543222 2499999998765 3344321 2235678899999999763 110
Q ss_pred -----ChHHHHHHHhhcCC-------C-----------------------------------------------------
Q 003881 389 -----FEPQIRSIVGQIRP-------D----------------------------------------------------- 403 (789)
Q Consensus 389 -----f~~~i~~il~~l~~-------~----------------------------------------------------- 403 (789)
+...+..++..+.. .
T Consensus 226 ~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV 305 (925)
T PRK12903 226 SNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIV 305 (925)
T ss_pred ccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceEE
Confidence 11112222222211 0
Q ss_pred --------------------------------------------------------ceEEEEeccCcHHHHHHHHHHhCC
Q 003881 404 --------------------------------------------------------RQTLLFSATMPRKVEKLAREILSD 427 (789)
Q Consensus 404 --------------------------------------------------------~q~ll~SAT~~~~i~~l~~~~l~~ 427 (789)
.++.+||.|......++..- ++-
T Consensus 306 ~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~i-Y~l 384 (925)
T PRK12903 306 RDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDI-YNM 384 (925)
T ss_pred ECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHH-hCC
Confidence 12233333332222222221 111
Q ss_pred CeEEeeccccCcccceeEEEEecCCCcccHHHHHHhcCCCC-CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCH
Q 003881 428 PVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQ 506 (789)
Q Consensus 428 p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~ 506 (789)
.+.......+....+.. -.++.....|+..+++.+.... .+.+|||.|.+....+.|+..|.+.+++..+|+....
T Consensus 385 ~Vv~IPTnkP~~R~D~~--d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~- 461 (925)
T PRK12903 385 RVNVVPTNKPVIRKDEP--DSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN- 461 (925)
T ss_pred CEEECCCCCCeeeeeCC--CcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch-
Confidence 11111111110000000 0122234577888877776543 4559999999999999999999999999999998644
Q ss_pred HHHHHHHHHhhcC-CcceEEeehhhhccCCCCCcc--------EEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEcc
Q 003881 507 ASRMEILQKFKSG-VYHVLIATDVAARGLDIKSIK--------SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (789)
Q Consensus 507 ~eR~~~l~~F~~G-~~~VLVaT~v~~rGlDI~~v~--------~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~ 577 (789)
+++..+-. ..| .-.|.|||++|+||.||.--. |||....+.|.---.|..||+||.| .+|.+..|++-
T Consensus 462 -e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQG-DpGss~f~lSL 538 (925)
T PRK12903 462 -AREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQG-DVGESRFFISL 538 (925)
T ss_pred -hhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCC-CCCcceEEEec
Confidence 33333322 455 456999999999999997432 8999999999988899999999999 68999999887
Q ss_pred ccH
Q 003881 578 KEA 580 (789)
Q Consensus 578 ~d~ 580 (789)
.|.
T Consensus 539 eD~ 541 (925)
T PRK12903 539 DDQ 541 (925)
T ss_pred chH
Confidence 764
No 141
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.70 E-value=5.2e-16 Score=176.09 Aligned_cols=122 Identities=25% Similarity=0.324 Sum_probs=99.0
Q ss_pred cHHHHHHhcCCCCC-CCCEEEEecccccHHHHHHHHHHc----------------------CCceeeccCCCCHHHHHHH
Q 003881 456 KLPWLLEKLPGMID-DGDVLVFASKKTTVDEIESQLAQK----------------------GFKAAALHGDKDQASRMEI 512 (789)
Q Consensus 456 k~~~L~~~L~~~~~-~~kvLVF~~s~~~a~~l~~~L~~~----------------------g~~v~~lhg~~~~~eR~~~ 512 (789)
|+..|+++|..... +.++|||.++...++.|..+|... |.....|.|.....+|...
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 33344555443322 348999999999999999999752 4568899999999999999
Q ss_pred HHHhhcC----CcceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCC-cEEEEEEcc
Q 003881 513 LQKFKSG----VYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKD-GTAYTLVTQ 577 (789)
Q Consensus 513 l~~F~~G----~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~-G~~i~lv~~ 577 (789)
...|++- ..-+||+|.+++-|+|+-.++.||+||..|||..-+|.|=|+.|.|+.+ ..+|.|+..
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAq 1276 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQ 1276 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhc
Confidence 9999863 2347999999999999999999999999999999999999999999544 445666643
No 142
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.69 E-value=5.1e-16 Score=166.25 Aligned_cols=328 Identities=18% Similarity=0.244 Sum_probs=202.5
Q ss_pred CCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEE
Q 003881 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (789)
Q Consensus 224 i~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLI 303 (789)
+..|....++++-.+.|++..-..-+.++.+-+..+.+.+-++++++||||||.+.--..+.+.+.. ...+..
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~-------~~~v~C 96 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH-------LTGVAC 96 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh-------ccceee
Confidence 6677777888888888876643344555666677777888999999999999976222222222221 133666
Q ss_pred EcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccch
Q 003881 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (789)
Q Consensus 304 l~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~ 383 (789)
..|.|..|.++..... ...++...--+|..-..+.+.. ...-+-.||.+.|+.-..... .|.++.+||+||||.
T Consensus 97 TQprrvaamsva~RVa---dEMDv~lG~EVGysIrfEdC~~--~~T~Lky~tDgmLlrEams~p-~l~~y~viiLDeahE 170 (699)
T KOG0925|consen 97 TQPRRVAAMSVAQRVA---DEMDVTLGEEVGYSIRFEDCTS--PNTLLKYCTDGMLLREAMSDP-LLGRYGVIILDEAHE 170 (699)
T ss_pred cCchHHHHHHHHHHHH---HHhccccchhccccccccccCC--hhHHHHHhcchHHHHHHhhCc-ccccccEEEechhhh
Confidence 7899999988755443 3335544444443333222100 001133567777766544333 588999999999994
Q ss_pred -hccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHHHHH
Q 003881 384 -MFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462 (789)
Q Consensus 384 -m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~ 462 (789)
-+..+..-.+.+-+..-+++.++|.||||+-.. -.+.|+.++-.+.+.. ...+.. ++.-....+.+...+.
T Consensus 171 RtlATDiLmGllk~v~~~rpdLk~vvmSatl~a~---Kfq~yf~n~Pll~vpg----~~PvEi-~Yt~e~erDylEaair 242 (699)
T KOG0925|consen 171 RTLATDILMGLLKEVVRNRPDLKLVVMSATLDAE---KFQRYFGNAPLLAVPG----THPVEI-FYTPEPERDYLEAAIR 242 (699)
T ss_pred hhHHHHHHHHHHHHHHhhCCCceEEEeecccchH---HHHHHhCCCCeeecCC----CCceEE-EecCCCChhHHHHHHH
Confidence 222111111112122235789999999997422 3455666655555432 122222 2222222233332222
Q ss_pred h---cCCCCCCCCEEEEecccccHHHHHHHHHHc---------CCceeeccCCCCHHHHHHHHHHhhc---C--CcceEE
Q 003881 463 K---LPGMIDDGDVLVFASKKTTVDEIESQLAQK---------GFKAAALHGDKDQASRMEILQKFKS---G--VYHVLI 525 (789)
Q Consensus 463 ~---L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~---------g~~v~~lhg~~~~~eR~~~l~~F~~---G--~~~VLV 525 (789)
. |......|.+|||....++.+..++.+... .+.|..|| +.+...+++-... | ..+|+|
T Consensus 243 tV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVv 318 (699)
T KOG0925|consen 243 TVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVV 318 (699)
T ss_pred HHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEE
Confidence 2 122234789999999999998888888753 35688888 4444444443321 2 357999
Q ss_pred eehhhhccCCCCCccEEEEEcC------------------CCCHHHHHHHHhhcCCCCCCCcEEEEEEccc
Q 003881 526 ATDVAARGLDIKSIKSVVNFDI------------------ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK 578 (789)
Q Consensus 526 aT~v~~rGlDI~~v~~VI~~d~------------------p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~ 578 (789)
+|.+++..|.|++|.+||.-++ |-+-..-.||.||+||. ++|.|+.|++++
T Consensus 319 stniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt--~pGkcfrLYte~ 387 (699)
T KOG0925|consen 319 STNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT--RPGKCFRLYTEE 387 (699)
T ss_pred EecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC--CCCceEEeecHH
Confidence 9999999999999999996332 44566667999999997 589999999864
No 143
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.69 E-value=2.1e-16 Score=148.31 Aligned_cols=119 Identities=45% Similarity=0.718 Sum_probs=109.4
Q ss_pred ccHHHHHHhcCCCC-CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhcc
Q 003881 455 EKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARG 533 (789)
Q Consensus 455 ~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rG 533 (789)
.|...+...+.... ..+++||||++...++.+.+.|...+..+..+||.++..+|..+++.|+++...||++|.++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 67777777777654 46799999999999999999999989999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEE
Q 003881 534 LDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTL 574 (789)
Q Consensus 534 lDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~l 574 (789)
+|+|.+++||++++|++...|+|++||++|.|+ .|.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~-~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQ-KGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCC-CceEEeC
Confidence 999999999999999999999999999999994 6777653
No 144
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.68 E-value=3.4e-14 Score=164.51 Aligned_cols=116 Identities=19% Similarity=0.211 Sum_probs=83.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhc----CCcceEEeehhhhccCCC--------
Q 003881 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKS----GVYHVLIATDVAARGLDI-------- 536 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~----G~~~VLVaT~v~~rGlDI-------- 536 (789)
..|++||.+.++..+..++..|...--..+.+.|+.+ .+...+++|++ |...||++|..+-+|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 4679999999999999999999764323455666543 35668888887 478999999999999999
Q ss_pred CC--ccEEEEEcCCCC-------------------------HHHHHHHHhhcCCCCCC--CcEEEEEEccccHHHHHHH
Q 003881 537 KS--IKSVVNFDIARD-------------------------MDMHVHRIGRTGRAGDK--DGTAYTLVTQKEARFAGEL 586 (789)
Q Consensus 537 ~~--v~~VI~~d~p~s-------------------------~~~yiQriGR~gR~G~k--~G~~i~lv~~~d~~~~~~l 586 (789)
|+ +++||+..+|.. ...+.|-+||.-|...- .|+.+++-..-...+-..+
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R~~~~yg~~~ 625 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGRIHWPYMESW 625 (636)
T ss_pred CCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCCCCchhHHHH
Confidence 33 899999777732 12234888999998744 5666655544333443333
No 145
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.67 E-value=9.6e-16 Score=166.89 Aligned_cols=277 Identities=22% Similarity=0.289 Sum_probs=183.2
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHH
Q 003881 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (789)
Q Consensus 263 rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~ 342 (789)
+-++-++||.||||.- +|+++.. ....++.-|.|-||..+++.+... |+.|..++|.......-
T Consensus 192 kIi~H~GPTNSGKTy~----ALqrl~~--------aksGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~~ 255 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYR----ALQRLKS--------AKSGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVLD 255 (700)
T ss_pred eEEEEeCCCCCchhHH----HHHHHhh--------hccceecchHHHHHHHHHHHhhhc----CCCccccccceeeecCC
Confidence 3466689999999965 5666632 344799999999999999888877 88998888865443321
Q ss_pred HHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHH-HhhcCCCceEEEEeccCcHHHHHHH
Q 003881 343 KELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSI-VGQIRPDRQTLLFSATMPRKVEKLA 421 (789)
Q Consensus 343 ~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~i-l~~l~~~~q~ll~SAT~~~~i~~l~ 421 (789)
. ...+..+-||.++.. .-..+++.||||++.|.|...+..+... |.......++.+= +.+-.+.
T Consensus 256 ~--~~~a~hvScTVEM~s--------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGe-----psvldlV 320 (700)
T KOG0953|consen 256 N--GNPAQHVSCTVEMVS--------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGE-----PSVLDLV 320 (700)
T ss_pred C--CCcccceEEEEEEee--------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCC-----chHHHHH
Confidence 1 112566677753321 1235889999999999987666555543 3333333333321 2344556
Q ss_pred HHHhCCCeEEeeccccCcccceeE-EEEecCCCcccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCc-eee
Q 003881 422 REILSDPVRVTVGEVGMANEDITQ-VVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFK-AAA 499 (789)
Q Consensus 422 ~~~l~~p~~i~i~~~~~~~~~i~q-~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~-v~~ 499 (789)
+.++... ...++. .+..+ ..-.-...++..|... ..|.+|| |-++...-.+...+.+.+.. +++
T Consensus 321 ~~i~k~T-----------Gd~vev~~YeRl-~pL~v~~~~~~sl~nl-k~GDCvV-~FSkk~I~~~k~kIE~~g~~k~aV 386 (700)
T KOG0953|consen 321 RKILKMT-----------GDDVEVREYERL-SPLVVEETALGSLSNL-KPGDCVV-AFSKKDIFTVKKKIEKAGNHKCAV 386 (700)
T ss_pred HHHHhhc-----------CCeeEEEeeccc-CcceehhhhhhhhccC-CCCCeEE-EeehhhHHHHHHHHHHhcCcceEE
Confidence 6555421 111111 11111 1111112344445444 3344444 45677788888888888766 999
Q ss_pred ccCCCCHHHHHHHHHHhhc--CCcceEEeehhhhccCCCCCccEEEEEcCC---------CCHHHHHHHHhhcCCCCC--
Q 003881 500 LHGDKDQASRMEILQKFKS--GVYHVLIATDVAARGLDIKSIKSVVNFDIA---------RDMDMHVHRIGRTGRAGD-- 566 (789)
Q Consensus 500 lhg~~~~~eR~~~l~~F~~--G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p---------~s~~~yiQriGR~gR~G~-- 566 (789)
|+|++++..|..--..|++ ++++||||||++++|||+ +++.||+|++- -......|..||+||.|.
T Consensus 387 IYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~ 465 (700)
T KOG0953|consen 387 IYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKY 465 (700)
T ss_pred EecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCC
Confidence 9999999999999999987 899999999999999999 89999998864 356777899999999983
Q ss_pred CCcEEEEEEccccHHHHHHH
Q 003881 567 KDGTAYTLVTQKEARFAGEL 586 (789)
Q Consensus 567 k~G~~i~lv~~~d~~~~~~l 586 (789)
..|.+.+|-. +|...+.++
T Consensus 466 ~~G~vTtl~~-eDL~~L~~~ 484 (700)
T KOG0953|consen 466 PQGEVTTLHS-EDLKLLKRI 484 (700)
T ss_pred cCceEEEeeH-hhHHHHHHH
Confidence 2455555543 344444333
No 146
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.67 E-value=8.3e-15 Score=179.77 Aligned_cols=123 Identities=18% Similarity=0.229 Sum_probs=87.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHHcCC--ceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCC--ccEEEE
Q 003881 469 DDGDVLVFASKKTTVDEIESQLAQKGF--KAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKS--IKSVVN 544 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~--~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~--v~~VI~ 544 (789)
..+++|||++++...+.++..|..... .+.++.-+++...|..+++.|+.+.-.||++|....+|+|+|+ +++||+
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 457999999999999999999976422 1223332444445789999999998899999999999999998 588888
Q ss_pred EcCCC----C--------------------------HHHHHHHHhhcCCCCCCCcEEEEEEcc-ccHHHHHHHHHHHH
Q 003881 545 FDIAR----D--------------------------MDMHVHRIGRTGRAGDKDGTAYTLVTQ-KEARFAGELVNSLI 591 (789)
Q Consensus 545 ~d~p~----s--------------------------~~~yiQriGR~gR~G~k~G~~i~lv~~-~d~~~~~~lv~~l~ 591 (789)
..+|. + +..+.|.+||.-|..+..|.++++-.. ....+-+.+++.|-
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~sLP 908 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLESLP 908 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHhCC
Confidence 77654 1 122258999999988545654444333 24455666666663
No 147
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.66 E-value=2.5e-16 Score=134.57 Aligned_cols=78 Identities=44% Similarity=0.695 Sum_probs=75.7
Q ss_pred HHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCC
Q 003881 488 SQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG 565 (789)
Q Consensus 488 ~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G 565 (789)
++|+..++.+..+||++++.+|..+++.|+++...|||||+++++|+|+|.+++||+|++|+++..|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 468889999999999999999999999999999999999999999999999999999999999999999999999986
No 148
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.66 E-value=4.5e-15 Score=183.44 Aligned_cols=325 Identities=22% Similarity=0.271 Sum_probs=209.3
Q ss_pred CCCcHHHHHHHHHHH-----cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHH
Q 003881 246 EKPTSIQCQALPIIL-----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK 320 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il-----~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~ 320 (789)
..++++|.+++.|+. .+.+.+++.++|.|||++.+. ++.+++.... ...+.+||+||+ +++.+|.+++.+
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~-~l~~~~~~~~---~~~~~~liv~p~-s~~~nw~~e~~k 411 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIA-LLLSLLESIK---VYLGPALIVVPA-SLLSNWKREFEK 411 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHH-HHHhhhhccc---CCCCCeEEEecH-HHHHHHHHHHhh
Confidence 568899999999976 257889999999999998444 4444333221 114568999998 566789999999
Q ss_pred HhhhcCCeEEEEECCCCh----HHHHHHHhcC-----CcEEEeChHHHHHHH-hhcccccCceeEEEEeccchhccCCCh
Q 003881 321 FAKSHGIRVSAVYGGMSK----LDQFKELKAG-----CEIVIATPGRLIDML-KMKALTMSRVTYLVLDEADRMFDLGFE 390 (789)
Q Consensus 321 ~~~~~~i~v~~~~gg~~~----~~~~~~l~~~-----~dIiV~Tp~~L~~~l-~~~~~~l~~i~~lVvDEah~m~~~~f~ 390 (789)
|+..... +...+|.... .+....+... .+|+++|++.|.... ....+.-..+.++|+||||++.+..-.
T Consensus 412 ~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~s~ 490 (866)
T COG0553 412 FAPDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQSS 490 (866)
T ss_pred hCccccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhhhH
Confidence 9874433 5666665541 4444444432 799999999998742 122334457889999999997553211
Q ss_pred HHHHHHHhhcCCCceEEEEeccC-cHHHHHHHH-----------------------------------------------
Q 003881 391 PQIRSIVGQIRPDRQTLLFSATM-PRKVEKLAR----------------------------------------------- 422 (789)
Q Consensus 391 ~~i~~il~~l~~~~q~ll~SAT~-~~~i~~l~~----------------------------------------------- 422 (789)
....+..++...+ +++|.|+ .+.+.++..
T Consensus 491 --~~~~l~~~~~~~~-~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 567 (866)
T COG0553 491 --EGKALQFLKALNR-LDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRK 567 (866)
T ss_pred --HHHHHHHHhhcce-eeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHH
Confidence 0000111111111 2222222 111111100
Q ss_pred --------------------------------------------------------------------------------
Q 003881 423 -------------------------------------------------------------------------------- 422 (789)
Q Consensus 423 -------------------------------------------------------------------------------- 422 (789)
T Consensus 568 ~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 647 (866)
T COG0553 568 LLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTR 647 (866)
T ss_pred HHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHH
Confidence
Q ss_pred --HHhCCCeEEeec-cccCccc--------ceeEEEEecCCCc-ccHHHHHHhc-CCCCCCC---CEEEEecccccHHHH
Q 003881 423 --EILSDPVRVTVG-EVGMANE--------DITQVVHVIPSDA-EKLPWLLEKL-PGMIDDG---DVLVFASKKTTVDEI 486 (789)
Q Consensus 423 --~~l~~p~~i~i~-~~~~~~~--------~i~q~~~~~~~~~-~k~~~L~~~L-~~~~~~~---kvLVF~~s~~~a~~l 486 (789)
.+|.+|..+... ....... ............. .|...+.++| ......+ ++|||++.....+.+
T Consensus 648 lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il 727 (866)
T COG0553 648 LRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLL 727 (866)
T ss_pred HHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHH
Confidence 000001000000 0000000 0000000000011 5666776777 4444444 899999999999999
Q ss_pred HHHHHHcCCceeeccCCCCHHHHHHHHHHhhcC--CcceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCC
Q 003881 487 ESQLAQKGFKAAALHGDKDQASRMEILQKFKSG--VYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRA 564 (789)
Q Consensus 487 ~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G--~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~ 564 (789)
..+|...++.+..++|.++...|...+..|.++ ...+|++|.+++.|||+..+++||+||++||+....|.+.|++|.
T Consensus 728 ~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~Ri 807 (866)
T COG0553 728 EDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRI 807 (866)
T ss_pred HHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHh
Confidence 999999999999999999999999999999986 556778889999999999999999999999999999999999999
Q ss_pred CCCC-cEEEEEEcccc
Q 003881 565 GDKD-GTAYTLVTQKE 579 (789)
Q Consensus 565 G~k~-G~~i~lv~~~d 579 (789)
|++. -.+|.|++...
T Consensus 808 gQ~~~v~v~r~i~~~t 823 (866)
T COG0553 808 GQKRPVKVYRLITRGT 823 (866)
T ss_pred cCcceeEEEEeecCCc
Confidence 9543 45666776654
No 149
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.65 E-value=6.3e-15 Score=172.05 Aligned_cols=274 Identities=19% Similarity=0.189 Sum_probs=174.1
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003881 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (789)
Q Consensus 247 ~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~ 326 (789)
.|++.|.-+. +.-.+..|+.+.||.|||+++++|++.+.+. |..|-||+++..||.+-++++..+...+|
T Consensus 76 r~ydvQlig~--l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~--------G~~VhVvT~NdyLA~RD~e~m~pvy~~LG 145 (870)
T CHL00122 76 RHFDVQLIGG--LVLNDGKIAEMKTGEGKTLVATLPAYLNALT--------GKGVHIVTVNDYLAKRDQEWMGQIYRFLG 145 (870)
T ss_pred CCCchHhhhh--HhhcCCccccccCCCCchHHHHHHHHHHHhc--------CCceEEEeCCHHHHHHHHHHHHHHHHHcC
Confidence 4667776554 4445668999999999999999999655432 55689999999999999999999999999
Q ss_pred CeEEEEECCCChHHHHHHHhcCCcEEEeChHHHH-HHHhh------cccccCceeEEEEeccchhc-cCC----------
Q 003881 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLI-DMLKM------KALTMSRVTYLVLDEADRMF-DLG---------- 388 (789)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~-~~l~~------~~~~l~~i~~lVvDEah~m~-~~~---------- 388 (789)
+.|.++.++.+..+.... -.|||+.+|..-|- ++|+. .......+.++||||+|.|+ |..
T Consensus 146 Lsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiISg~~ 223 (870)
T CHL00122 146 LTVGLIQEGMSSEERKKN--YLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQS 223 (870)
T ss_pred CceeeeCCCCChHHHHHh--cCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceeccCCC
Confidence 999999888776543222 24899999986442 23322 22235678999999999762 100
Q ss_pred -----ChHHHHHHHhhcCCC------------------------------------------------------------
Q 003881 389 -----FEPQIRSIVGQIRPD------------------------------------------------------------ 403 (789)
Q Consensus 389 -----f~~~i~~il~~l~~~------------------------------------------------------------ 403 (789)
....+..+...+..+
T Consensus 224 ~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dYiV 303 (870)
T CHL00122 224 KTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYIV 303 (870)
T ss_pred ccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 000111111111100
Q ss_pred --------------------------------------------------------ceEEEEeccCcHHHHHHHHHHhCC
Q 003881 404 --------------------------------------------------------RQTLLFSATMPRKVEKLAREILSD 427 (789)
Q Consensus 404 --------------------------------------------------------~q~ll~SAT~~~~i~~l~~~~l~~ 427 (789)
..+.+||.|......++ ..+++-
T Consensus 304 ~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef-~~iY~l 382 (870)
T CHL00122 304 RNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEF-EKIYNL 382 (870)
T ss_pred ECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHH-HHHhCC
Confidence 23445555543332222 222222
Q ss_pred CeEEeeccccCcccceeEEEEecCCCcccHHHHHHhcCCCC-CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCH
Q 003881 428 PVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQ 506 (789)
Q Consensus 428 p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~ 506 (789)
.+.+.....+....+. ...+......|+..+++.+.... .+.+|||-|.+....+.|+..|.+.+++..+|+..-.+
T Consensus 383 ~vv~IPtnkp~~R~d~--~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~ 460 (870)
T CHL00122 383 EVVCIPTHRPMLRKDL--PDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPEN 460 (870)
T ss_pred CEEECCCCCCccceeC--CCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCcc
Confidence 2222111111111111 11223345567777777655443 34599999999999999999999999999999986433
Q ss_pred HHHH-HHHHHhhcC-CcceEEeehhhhccCCCC
Q 003881 507 ASRM-EILQKFKSG-VYHVLIATDVAARGLDIK 537 (789)
Q Consensus 507 ~eR~-~~l~~F~~G-~~~VLVaT~v~~rGlDI~ 537 (789)
.+++ .++.. .| .-.|-|||++|+||.||.
T Consensus 461 ~~~EA~IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 461 VRRESEIVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred chhHHHHHHh--cCCCCcEEEeccccCCCcCee
Confidence 2233 33332 44 346999999999999985
No 150
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.64 E-value=5e-15 Score=139.46 Aligned_cols=144 Identities=40% Similarity=0.548 Sum_probs=112.9
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHH
Q 003881 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (789)
Q Consensus 263 rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~ 342 (789)
+++++.++||+|||.+++..+...... ...+++||++|++.|+.|+.+.+..+... .+.+..+.+........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS------LKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQE 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHH
Confidence 468999999999999877777665533 23567999999999999999999988765 67788888877766665
Q ss_pred HHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEeccC
Q 003881 343 KELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (789)
Q Consensus 343 ~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~ 413 (789)
.......+|+|+|++.+...+.........+++|||||+|.+....+...............+++++|||+
T Consensus 74 ~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 74 KLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 55567899999999999888766555566789999999999887655544333344456778899999996
No 151
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.60 E-value=1.6e-13 Score=160.13 Aligned_cols=127 Identities=22% Similarity=0.265 Sum_probs=97.5
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003881 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (789)
Q Consensus 247 ~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~ 326 (789)
.|+++|.-+--.+ .+.-|..+.||-|||+++.+|++...+. |..|-||+++.-||..-.+++..+...+|
T Consensus 85 r~ydVQliGgl~L--h~G~IAEM~TGEGKTL~atlpaylnAL~--------GkgVhVVTvNdYLA~RDae~m~~vy~~LG 154 (939)
T PRK12902 85 RHFDVQLIGGMVL--HEGQIAEMKTGEGKTLVATLPSYLNALT--------GKGVHVVTVNDYLARRDAEWMGQVHRFLG 154 (939)
T ss_pred CcchhHHHhhhhh--cCCceeeecCCCChhHHHHHHHHHHhhc--------CCCeEEEeCCHHHHHhHHHHHHHHHHHhC
Confidence 4566665554444 4557899999999999999999876543 55589999999999999999999999999
Q ss_pred CeEEEEECCCChHHHHHHHhcCCcEEEeChHHH-----HHHHhh--cccccCceeEEEEeccchhc
Q 003881 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-----IDMLKM--KALTMSRVTYLVLDEADRMF 385 (789)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L-----~~~l~~--~~~~l~~i~~lVvDEah~m~ 385 (789)
+.|.++.++....+. ...-.|||+.+|...| .+.+.. .......+.++||||+|.|+
T Consensus 155 Ltvg~i~~~~~~~er--r~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 155 LSVGLIQQDMSPEER--KKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred CeEEEECCCCChHHH--HHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 999999887765433 2334699999999887 444332 22345778999999999763
No 152
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.59 E-value=1.6e-14 Score=156.91 Aligned_cols=349 Identities=13% Similarity=0.065 Sum_probs=232.4
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHH
Q 003881 238 HAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLE 317 (789)
Q Consensus 238 ~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~ 317 (789)
..+.++.-.....+|.++|..+.+|+++++.-.|-+||.++|.+.....++.-+ ....|++.|+.++++...+.
T Consensus 277 ~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~------~s~~~~~~~~~~~~~~~~~~ 350 (1034)
T KOG4150|consen 277 SLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCH------ATNSLLPSEMVEHLRNGSKG 350 (1034)
T ss_pred HHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCc------ccceecchhHHHHhhccCCc
Confidence 344445556778999999999999999999999999999999998887766543 23368889999998654322
Q ss_pred HHHHh---hhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccc----cCceeEEEEeccchhccCCCh
Q 003881 318 TKKFA---KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALT----MSRVTYLVLDEADRMFDLGFE 390 (789)
Q Consensus 318 ~~~~~---~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~----l~~i~~lVvDEah~m~~~~f~ 390 (789)
+.-.. +...--++-.+.+.+......-.+.+..++++.|......+..+... +-...++++||+|..+-. |.
T Consensus 351 ~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~~ 429 (1034)
T KOG4150|consen 351 QVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP-TK 429 (1034)
T ss_pred eEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc-hh
Confidence 11111 01122334556666666666666778999999999887765444333 223467899999965432 22
Q ss_pred ----HHHHHHHhhc-----CCCceEEEEeccCcHHHHHHHHHHhCCC-eEEeeccccCcccceeEEEEecCC-----C--
Q 003881 391 ----PQIRSIVGQI-----RPDRQTLLFSATMPRKVEKLAREILSDP-VRVTVGEVGMANEDITQVVHVIPS-----D-- 453 (789)
Q Consensus 391 ----~~i~~il~~l-----~~~~q~ll~SAT~~~~i~~l~~~~l~~p-~~i~i~~~~~~~~~i~q~~~~~~~-----~-- 453 (789)
.+++.++..+ ..+.|++-.+||+...++....-+.-+- ..+.+. ..+..-...+.+-+. .
T Consensus 430 ~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~D---GSPs~~K~~V~WNP~~~P~~~~~ 506 (1034)
T KOG4150|consen 430 ALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTID---GSPSSEKLFVLWNPSAPPTSKSE 506 (1034)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEec---CCCCccceEEEeCCCCCCcchhh
Confidence 2333443333 2467899999998766554333322222 222222 222222334444332 1
Q ss_pred -cccHHHHHHhcCCCC-CCCCEEEEecccccHHHHHHHHHH----cC----CceeeccCCCCHHHHHHHHHHhhcCCcce
Q 003881 454 -AEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQ----KG----FKAAALHGDKDQASRMEILQKFKSGVYHV 523 (789)
Q Consensus 454 -~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~----~g----~~v~~lhg~~~~~eR~~~l~~F~~G~~~V 523 (789)
..+......++.++. .+-++|-||+.+.-|+.|....+. .+ -.+..+.|+....+|.++....-.|+..-
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~g 586 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCG 586 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeE
Confidence 122222222222222 344899999999999887655443 22 13566789999999999999999999999
Q ss_pred EEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEE--ccccHHHHHHHHHHHHHcCCCc
Q 003881 524 LIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLV--TQKEARFAGELVNSLIAAGQNV 597 (789)
Q Consensus 524 LVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv--~~~d~~~~~~lv~~l~~~~q~v 597 (789)
+|+|++++-||||-+++.|++.++|.++..+.|+.||+||.. +...++.++ .+-|..++..-...+...+.++
T Consensus 587 iIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRN-k~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~EL 661 (1034)
T KOG4150|consen 587 IIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRN-KPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEEL 661 (1034)
T ss_pred EEecchhhhccccccceeEEEccCchhHHHHHHHhccccccC-CCceEEEEEeccchhhHhhcCcHHHhCCCccee
Confidence 999999999999999999999999999999999999999997 666655544 3445555555445554444443
No 153
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.56 E-value=2.1e-14 Score=142.88 Aligned_cols=153 Identities=23% Similarity=0.183 Sum_probs=101.4
Q ss_pred CCcHHHHHHHHHHHc-------CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHH
Q 003881 247 KPTSIQCQALPIILS-------GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETK 319 (789)
Q Consensus 247 ~ptpiQ~~~i~~il~-------grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~ 319 (789)
+|+++|.+++..+.. .+++++.++||+|||.+++..+.... . ++||+||+..|+.|+...+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~-~----------~~l~~~p~~~l~~Q~~~~~~ 71 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA-R----------KVLIVAPNISLLEQWYDEFD 71 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-C----------EEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-c----------ceeEecCHHHHHHHHHHHHH
Confidence 589999999999884 68999999999999998665444433 2 69999999999999999997
Q ss_pred HHhhhcCCeEEE-----------EECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhc-----------ccccCceeEEE
Q 003881 320 KFAKSHGIRVSA-----------VYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK-----------ALTMSRVTYLV 377 (789)
Q Consensus 320 ~~~~~~~i~v~~-----------~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~-----------~~~l~~i~~lV 377 (789)
.+.......... ..................+|+++|+..|....... ......+.+||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI 151 (184)
T PF04851_consen 72 DFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVI 151 (184)
T ss_dssp HHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEE
T ss_pred HhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEE
Confidence 665421111000 00111111112222346899999999998876531 12345688999
Q ss_pred EeccchhccCCChHHHHHHHhhcCCCceEEEEeccCcH
Q 003881 378 LDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPR 415 (789)
Q Consensus 378 vDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~ 415 (789)
+||||++.... ....++. .+...+|+||||+++
T Consensus 152 ~DEaH~~~~~~---~~~~i~~--~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 152 IDEAHHYPSDS---SYREIIE--FKAAFILGLTATPFR 184 (184)
T ss_dssp EETGGCTHHHH---HHHHHHH--SSCCEEEEEESS-S-
T ss_pred EehhhhcCCHH---HHHHHHc--CCCCeEEEEEeCccC
Confidence 99999865432 1344444 556779999999863
No 154
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.53 E-value=1.1e-12 Score=156.98 Aligned_cols=105 Identities=22% Similarity=0.311 Sum_probs=79.1
Q ss_pred CCCEEEEecccccHHHHHHHHHHcCCc-eeeccCCCCHHHHHHHHHHhhcCCc-ceEEeehhhhccCCCCC--ccEEEEE
Q 003881 470 DGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKDQASRMEILQKFKSGVY-HVLIATDVAARGLDIKS--IKSVVNF 545 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~g~~-v~~lhg~~~~~eR~~~l~~F~~G~~-~VLVaT~v~~rGlDI~~--v~~VI~~ 545 (789)
++++|||++++..+..+.+.|...... ....+|..+ +...++.|+.+.- -|||+|..+.+|+|+++ ++.||+.
T Consensus 479 ~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~ 555 (654)
T COG1199 479 PGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIV 555 (654)
T ss_pred CCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEE
Confidence 559999999999999999999886553 344454444 4588888887655 89999999999999998 5788887
Q ss_pred cCCCC------------------------------HHHHHHHHhhcCCCCCCCcEEEEEEcc
Q 003881 546 DIARD------------------------------MDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (789)
Q Consensus 546 d~p~s------------------------------~~~yiQriGR~gR~G~k~G~~i~lv~~ 577 (789)
..|.- +....|.+||+-|.-+..|+++++-..
T Consensus 556 ~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R 617 (654)
T COG1199 556 GLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKR 617 (654)
T ss_pred ecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEeccc
Confidence 76652 233369999999976444655555443
No 155
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.50 E-value=7.8e-14 Score=119.39 Aligned_cols=81 Identities=46% Similarity=0.724 Sum_probs=77.7
Q ss_pred HHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCC
Q 003881 485 EIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRA 564 (789)
Q Consensus 485 ~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~ 564 (789)
.+...|...++.+..+||.++..+|..+++.|+++...|||+|+++++|+|++.+++||++++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46788888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 003881 565 G 565 (789)
Q Consensus 565 G 565 (789)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 156
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.48 E-value=1.7e-11 Score=146.36 Aligned_cols=118 Identities=22% Similarity=0.321 Sum_probs=81.4
Q ss_pred CCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhc----CCcceEEeehhhhccCCCCC--ccEEE
Q 003881 470 DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKS----GVYHVLIATDVAARGLDIKS--IKSVV 543 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~----G~~~VLVaT~v~~rGlDI~~--v~~VI 543 (789)
.+++|||++++...+.++..|....-.-..++|.. .|..+++.|++ ++..||++|..+.+|||+|+ +++||
T Consensus 534 ~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vI 610 (697)
T PRK11747 534 HKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVI 610 (697)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEEE
Confidence 45799999999999999999975322234456643 46778877764 67789999999999999998 78999
Q ss_pred EEcCCC----CHH--------------------------HHHHHHhhcCCCCCCCcEEEEEEccc-cHHHHHHHHHHH
Q 003881 544 NFDIAR----DMD--------------------------MHVHRIGRTGRAGDKDGTAYTLVTQK-EARFAGELVNSL 590 (789)
Q Consensus 544 ~~d~p~----s~~--------------------------~yiQriGR~gR~G~k~G~~i~lv~~~-d~~~~~~lv~~l 590 (789)
+..+|. ++. .+.|.+||.-|.....|.++++-..- ...+-+.+++.|
T Consensus 611 I~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R~~~~~Yg~~~l~sL 688 (697)
T PRK11747 611 ITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRRLLTKRYGKRLLDAL 688 (697)
T ss_pred EEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcccccchhHHHHHHHhC
Confidence 877664 221 12488999999874445544333321 344455555554
No 157
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.47 E-value=1.1e-12 Score=153.86 Aligned_cols=314 Identities=18% Similarity=0.227 Sum_probs=207.9
Q ss_pred CCcHHHHHHHHHHHcC-CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHH-Hhhh
Q 003881 247 KPTSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK-FAKS 324 (789)
Q Consensus 247 ~ptpiQ~~~i~~il~g-rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~-~~~~ 324 (789)
...|+|.+.++.+.+. +++++++|+|||||+++-++++. +....++++++|..+.+...+..+.+ |.+.
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~---------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~ 1213 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR---------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL 1213 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC---------CccceEEEEecchHHHHHHHHHHHHHhhccc
Confidence 3479999999998865 67899999999999998877765 13456799999999999887777664 4555
Q ss_pred cCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCC---C--hHHHHHHHhh
Q 003881 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG---F--EPQIRSIVGQ 399 (789)
Q Consensus 325 ~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~---f--~~~i~~il~~ 399 (789)
.|..++.+.|..+..- .+....+|+|+||+++-.+ + ....+++.|+||+|.+.... + .-.++.|-..
T Consensus 1214 ~G~~~~~l~ge~s~~l---kl~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q 1285 (1674)
T KOG0951|consen 1214 LGLRIVKLTGETSLDL---KLLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQ 1285 (1674)
T ss_pred cCceEEecCCccccch---HHhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHH
Confidence 6788877777655432 3444589999999998655 2 67789999999999887421 0 0115666666
Q ss_pred cCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCC---cccHHH---HHHhcC-CCCCCCC
Q 003881 400 IRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSD---AEKLPW---LLEKLP-GMIDDGD 472 (789)
Q Consensus 400 l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~---~~k~~~---L~~~L~-~~~~~~k 472 (789)
+-+..+++.+|..+.+. .++ +...+..+.............-.+..+... ...+.+ .+..+. ......+
T Consensus 1286 ~~k~ir~v~ls~~lana-~d~---ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~ 1361 (1674)
T KOG0951|consen 1286 LEKKIRVVALSSSLANA-RDL---IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKP 1361 (1674)
T ss_pred HHhheeEEEeehhhccc-hhh---ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCC
Confidence 77788899999887643 223 111111222112222222222222222211 111111 111111 1224568
Q ss_pred EEEEecccccHHHHHHHHHHc----------------------CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhh
Q 003881 473 VLVFASKKTTVDEIESQLAQK----------------------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530 (789)
Q Consensus 473 vLVF~~s~~~a~~l~~~L~~~----------------------g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~ 530 (789)
.+||++++++|..++..|-.. .++..+=|.+++..+...+-..|..|.+.|+|...-
T Consensus 1362 ~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~- 1440 (1674)
T KOG0951|consen 1362 AIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD- 1440 (1674)
T ss_pred eEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-
Confidence 999999999998776554321 233444499999999999999999999999998866
Q ss_pred hccCCCCCccEEEE----EcC------CCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHH
Q 003881 531 ARGLDIKSIKSVVN----FDI------ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGEL 586 (789)
Q Consensus 531 ~rGlDI~~v~~VI~----~d~------p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~l 586 (789)
..|+-...--+||. ||- +-.+...+|++|++.|+ |.|+++....+..++++.
T Consensus 1441 ~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~----~k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1441 CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGA----GKCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcCC----ccEEEEecCchHHHHHHh
Confidence 77877754333442 443 34578889999999985 568888777777665543
No 158
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.46 E-value=5.1e-12 Score=149.73 Aligned_cols=309 Identities=18% Similarity=0.171 Sum_probs=178.7
Q ss_pred CCcHHHHHHHHHHHcC------C--CEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHH
Q 003881 247 KPTSIQCQALPIILSG------R--DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLET 318 (789)
Q Consensus 247 ~ptpiQ~~~i~~il~g------r--dvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~ 318 (789)
.-..+|-.|+..+..- . =+|-.|.||+|||++=.- |+..+.. ...|.+..|..-.|.|..|.-..+
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR-ImyaLsd-----~~~g~RfsiALGLRTLTLQTGda~ 481 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR-AMYALRD-----DKQGARFAIALGLRSLTLQTGHAL 481 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH-HHHHhCC-----CCCCceEEEEccccceeccchHHH
Confidence 3457999999988742 1 245579999999987433 3333322 134567777788888888888888
Q ss_pred HHHhhhcCCeEEEEECCCChHHHHH-------------------------------------------HHhc--------
Q 003881 319 KKFAKSHGIRVSAVYGGMSKLDQFK-------------------------------------------ELKA-------- 347 (789)
Q Consensus 319 ~~~~~~~~i~v~~~~gg~~~~~~~~-------------------------------------------~l~~-------- 347 (789)
++-+...+-...+++|+....+... .+..
T Consensus 482 r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll 561 (1110)
T TIGR02562 482 KTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLL 561 (1110)
T ss_pred HHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhh
Confidence 8766544445555666543222110 0000
Q ss_pred CCcEEEeChHHHHHHHhhc---ccccC----ceeEEEEeccchhccCCChHHHHHHHhhc-CCCceEEEEeccCcHHHHH
Q 003881 348 GCEIVIATPGRLIDMLKMK---ALTMS----RVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPDRQTLLFSATMPRKVEK 419 (789)
Q Consensus 348 ~~dIiV~Tp~~L~~~l~~~---~~~l~----~i~~lVvDEah~m~~~~f~~~i~~il~~l-~~~~q~ll~SAT~~~~i~~ 419 (789)
...|+|||+..++...... ...+. .-+.|||||+|.+-...+ ..+..++.-+ .....+|+||||+|+.+..
T Consensus 562 ~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~-~~L~rlL~w~~~lG~~VlLmSATLP~~l~~ 640 (1110)
T TIGR02562 562 AAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDL-PALLRLVQLAGLLGSRVLLSSATLPPALVK 640 (1110)
T ss_pred cCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHH-HHHHHHHHHHHHcCCCEEEEeCCCCHHHHH
Confidence 1689999999998876321 11111 135799999997322111 1222222211 2357799999999987654
Q ss_pred H-HHHH----------hCC---CeEEeeccc---cCc--------------------------ccceeEEE--EecCCCc
Q 003881 420 L-AREI----------LSD---PVRVTVGEV---GMA--------------------------NEDITQVV--HVIPSDA 454 (789)
Q Consensus 420 l-~~~~----------l~~---p~~i~i~~~---~~~--------------------------~~~i~q~~--~~~~~~~ 454 (789)
. ...| .+. +..|...-. ... ...+...- ..++...
T Consensus 641 ~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~ 720 (1110)
T TIGR02562 641 TLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLP 720 (1110)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCcc
Confidence 3 3333 121 221211100 000 00111111 1111111
Q ss_pred ----ccHHHHHHhcCC-----------CCC-CC-C---EEEEecccccHHHHHHHHHHc------CCceeeccCCCCHHH
Q 003881 455 ----EKLPWLLEKLPG-----------MID-DG-D---VLVFASKKTTVDEIESQLAQK------GFKAAALHGDKDQAS 508 (789)
Q Consensus 455 ----~k~~~L~~~L~~-----------~~~-~~-k---vLVF~~s~~~a~~l~~~L~~~------g~~v~~lhg~~~~~e 508 (789)
.....+.+.+.+ ... .+ + -||-++++..+..++..|... .+.++++|+......
T Consensus 721 ~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~ 800 (1110)
T TIGR02562 721 RENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLL 800 (1110)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHH
Confidence 111122221110 111 12 2 278888888888888888654 345889999988777
Q ss_pred HHHHHHHh----------------------hc----CCcceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcC
Q 003881 509 RMEILQKF----------------------KS----GVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTG 562 (789)
Q Consensus 509 R~~~l~~F----------------------~~----G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~g 562 (789)
|..+.+.. .+ +...|+|+|.+++.|+|+ +.+.+| --|..+...+|+.||+.
T Consensus 801 Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~--~~~~~~~sliQ~aGR~~ 877 (1110)
T TIGR02562 801 RSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAI--ADPSSMRSIIQLAGRVN 877 (1110)
T ss_pred HHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeee--eccCcHHHHHHHhhccc
Confidence 77655443 12 466799999999999999 455554 33667999999999999
Q ss_pred CCC
Q 003881 563 RAG 565 (789)
Q Consensus 563 R~G 565 (789)
|.+
T Consensus 878 R~~ 880 (1110)
T TIGR02562 878 RHR 880 (1110)
T ss_pred ccc
Confidence 988
No 159
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.45 E-value=1.7e-11 Score=147.28 Aligned_cols=74 Identities=22% Similarity=0.201 Sum_probs=61.9
Q ss_pred CCCCCcHHHHHHHHHHH----cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHH
Q 003881 244 GYEKPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETK 319 (789)
Q Consensus 244 g~~~ptpiQ~~~i~~il----~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~ 319 (789)
.|..++|.|.+.+..+. .+.++++.+|||+|||++.+.|+|.++...+ ..+++++++.|..-..|+.++++
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~-----~~~kIiy~sRThsQl~q~i~Elk 81 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP-----EVRKIIYASRTHSQLEQATEELR 81 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc-----ccccEEEEcccchHHHHHHHHHH
Confidence 36667999999887765 6789999999999999999999999875432 34679999999999999999999
Q ss_pred HHh
Q 003881 320 KFA 322 (789)
Q Consensus 320 ~~~ 322 (789)
+..
T Consensus 82 ~~~ 84 (705)
T TIGR00604 82 KLM 84 (705)
T ss_pred hhh
Confidence 853
No 160
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.45 E-value=7.4e-12 Score=147.03 Aligned_cols=273 Identities=10% Similarity=0.130 Sum_probs=163.8
Q ss_pred CCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHH---HHhc
Q 003881 271 TGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELKA 347 (789)
Q Consensus 271 TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~---~l~~ 347 (789)
+|||||.+|+-.+-..+ . .|..+|||+|...|+.|+...++..+. +..+..++++.+..+... .+..
T Consensus 169 ~GSGKTevyl~~i~~~l-~-------~Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~~ 238 (665)
T PRK14873 169 PGEDWARRLAAAAAATL-R-------AGRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAVLR 238 (665)
T ss_pred CCCcHHHHHHHHHHHHH-H-------cCCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHHhC
Confidence 59999999776655544 2 366799999999999999999887753 266888999888765443 4444
Q ss_pred C-CcEEEeChHHHHHHHhhcccccCceeEEEEeccchh--ccC-CChHHHH--HHHhhcCCCceEEEEeccCcHHHHHHH
Q 003881 348 G-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM--FDL-GFEPQIR--SIVGQIRPDRQTLLFSATMPRKVEKLA 421 (789)
Q Consensus 348 ~-~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m--~~~-~f~~~i~--~il~~l~~~~q~ll~SAT~~~~i~~l~ 421 (789)
| ..|||+|-..+ ...+.++.+|||||-|.- .+. ......+ .++.....+..+|+.|||++-+....+
T Consensus 239 G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~ 311 (665)
T PRK14873 239 GQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALV 311 (665)
T ss_pred CCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 4 79999995433 346889999999999942 221 1111222 223333457789999999875544333
Q ss_pred HHHhCCCeEEeecc--ccCcccceeEEEEecC-----CCc----ccHHHHHHhcCCCCCCCCEEEEecccccH-------
Q 003881 422 REILSDPVRVTVGE--VGMANEDITQVVHVIP-----SDA----EKLPWLLEKLPGMIDDGDVLVFASKKTTV------- 483 (789)
Q Consensus 422 ~~~l~~p~~i~i~~--~~~~~~~i~q~~~~~~-----~~~----~k~~~L~~~L~~~~~~~kvLVF~~s~~~a------- 483 (789)
.. +....+.... .......| +.+..-. ... .--..+++.+.+.+..+++|||+|.+-.+
T Consensus 312 ~~--g~~~~~~~~~~~~~~~~P~v-~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~gqvll~lnRrGyap~l~C~~ 388 (665)
T PRK14873 312 ES--GWAHDLVAPRPVVRARAPRV-RALGDSGLALERDPAARAARLPSLAFRAARDALEHGPVLVQVPRRGYVPSLACAR 388 (665)
T ss_pred hc--CcceeeccccccccCCCCeE-EEEeCchhhhccccccccCccCHHHHHHHHHHHhcCcEEEEecCCCCCCeeEhhh
Confidence 21 1111111000 00111111 1111100 000 01134556666555556999999865443
Q ss_pred ----------------------------------------------------HHHHHHHHHc--CCceeeccCCCCHHHH
Q 003881 484 ----------------------------------------------------DEIESQLAQK--GFKAAALHGDKDQASR 509 (789)
Q Consensus 484 ----------------------------------------------------~~l~~~L~~~--g~~v~~lhg~~~~~eR 509 (789)
+++++.|.+. +.++..+. +
T Consensus 389 Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~d-------~ 461 (665)
T PRK14873 389 CRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTSG-------G 461 (665)
T ss_pred CcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEEC-------h
Confidence 3334444332 23333333 2
Q ss_pred HHHHHHhhcCCcceEEeeh----hhhccCCCCCccEEEEEcCCC------------CHHHHHHHHhhcCCCCCCCcEEEE
Q 003881 510 MEILQKFKSGVYHVLIATD----VAARGLDIKSIKSVVNFDIAR------------DMDMHVHRIGRTGRAGDKDGTAYT 573 (789)
Q Consensus 510 ~~~l~~F~~G~~~VLVaT~----v~~rGlDI~~v~~VI~~d~p~------------s~~~yiQriGR~gR~G~k~G~~i~ 573 (789)
+.+++.|. ++.+|||+|. +++ .+++.|+..|... ....+.|..||+||.. +.|.+++
T Consensus 462 d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~-~~G~V~i 534 (665)
T PRK14873 462 DQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRA-DGGQVVV 534 (665)
T ss_pred HHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCC-CCCEEEE
Confidence 34788886 5899999998 555 3667777766542 2344578889999987 6788887
Q ss_pred EEcc
Q 003881 574 LVTQ 577 (789)
Q Consensus 574 lv~~ 577 (789)
...+
T Consensus 535 q~~p 538 (665)
T PRK14873 535 VAES 538 (665)
T ss_pred EeCC
Confidence 7533
No 161
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.39 E-value=7.8e-12 Score=147.47 Aligned_cols=125 Identities=21% Similarity=0.258 Sum_probs=100.6
Q ss_pred CcccHHHHHHhcCCCCC-CCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhh
Q 003881 453 DAEKLPWLLEKLPGMID-DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAA 531 (789)
Q Consensus 453 ~~~k~~~L~~~L~~~~~-~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~ 531 (789)
...|+..+++.+..... +.+|||-+.+.+..+.|+..|...+++..+|+......+-+.+-+.=+ .-.|-|||++|+
T Consensus 610 ~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~--~GaVTIATNMAG 687 (1112)
T PRK12901 610 KREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQ--PGTVTIATNMAG 687 (1112)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCC--CCcEEEeccCcC
Confidence 45677777777665443 459999999999999999999999999999988755444333333222 345999999999
Q ss_pred ccCCCC--------CccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccH
Q 003881 532 RGLDIK--------SIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (789)
Q Consensus 532 rGlDI~--------~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~ 580 (789)
||-||. +--+||--..+.|.--..|-.||+||.| .+|.+..|++-+|.
T Consensus 688 RGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQG-DPGsS~f~lSLEDd 743 (1112)
T PRK12901 688 RGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQG-DPGSSQFYVSLEDN 743 (1112)
T ss_pred CCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCC-CCCcceEEEEcccH
Confidence 999998 4568998999999999999999999999 68999999887764
No 162
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.31 E-value=6.8e-12 Score=135.12 Aligned_cols=156 Identities=22% Similarity=0.228 Sum_probs=95.8
Q ss_pred HHHHHHHHHH-------------cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHH
Q 003881 251 IQCQALPIIL-------------SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLE 317 (789)
Q Consensus 251 iQ~~~i~~il-------------~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~ 317 (789)
+|.+++.+++ ..+.+|++.++|+|||++.+. ++.++....... ....+|||||. .+..||..+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~-~~~~l~~~~~~~--~~~~~LIv~P~-~l~~~W~~E 76 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIA-LISYLKNEFPQR--GEKKTLIVVPS-SLLSQWKEE 76 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHH-HHHHHHHCCTTS--S-S-EEEEE-T-TTHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhh-hhhhhhhccccc--cccceeEeecc-chhhhhhhh
Confidence 6889998884 236799999999999987444 444444332110 11248999999 777899999
Q ss_pred HHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHh---hcccccCceeEEEEeccchhccCCChHHHH
Q 003881 318 TKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLK---MKALTMSRVTYLVLDEADRMFDLGFEPQIR 394 (789)
Q Consensus 318 ~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~---~~~~~l~~i~~lVvDEah~m~~~~f~~~i~ 394 (789)
+.+++....+++..+.+...............+|+|+|++.+..... ...+.-..+++|||||+|.+.+. .....
T Consensus 77 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~--~s~~~ 154 (299)
T PF00176_consen 77 IEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNK--DSKRY 154 (299)
T ss_dssp HHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTT--TSHHH
T ss_pred hccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccccc--ccccc
Confidence 99998655677666666551222222233458999999999981110 11122245999999999998654 33444
Q ss_pred HHHhhcCCCceEEEEeccC
Q 003881 395 SIVGQIRPDRQTLLFSATM 413 (789)
Q Consensus 395 ~il~~l~~~~q~ll~SAT~ 413 (789)
..+..+. ....+++|||+
T Consensus 155 ~~l~~l~-~~~~~lLSgTP 172 (299)
T PF00176_consen 155 KALRKLR-ARYRWLLSGTP 172 (299)
T ss_dssp HHHHCCC-ECEEEEE-SS-
T ss_pred ccccccc-cceEEeecccc
Confidence 4555565 56678899995
No 163
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.26 E-value=2.7e-10 Score=132.25 Aligned_cols=286 Identities=16% Similarity=0.206 Sum_probs=177.0
Q ss_pred EEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHH
Q 003881 265 IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE 344 (789)
Q Consensus 265 vll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~ 344 (789)
.++.+|+|+|||.+ ++..|...++. ...++|+|.-.+.|+.++...++.. ++.-...|........ .
T Consensus 52 ~vVRSpMGTGKTta-Li~wLk~~l~~------~~~~VLvVShRrSL~~sL~~rf~~~----~l~gFv~Y~d~~~~~i-~- 118 (824)
T PF02399_consen 52 LVVRSPMGTGKTTA-LIRWLKDALKN------PDKSVLVVSHRRSLTKSLAERFKKA----GLSGFVNYLDSDDYII-D- 118 (824)
T ss_pred EEEECCCCCCcHHH-HHHHHHHhccC------CCCeEEEEEhHHHHHHHHHHHHhhc----CCCcceeeeccccccc-c-
Confidence 56779999999987 34444444332 3566999999999999998777754 2211112222111100 0
Q ss_pred HhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHH------HH-HHhhcCCCceEEEEeccCcHHH
Q 003881 345 LKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQI------RS-IVGQIRPDRQTLLFSATMPRKV 417 (789)
Q Consensus 345 l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i------~~-il~~l~~~~q~ll~SAT~~~~i 417 (789)
....+-+++..+.|..+. ...+.++++|||||+-.++..=|.+.+ .. +...++....+|++-|++....
T Consensus 119 -~~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~t 194 (824)
T PF02399_consen 119 -GRPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQT 194 (824)
T ss_pred -ccccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHH
Confidence 012567777777776554 234677999999999976654232222 22 3344566778999999999998
Q ss_pred HHHHHHHhCC-CeEEeeccccCcccceeEEEEecC-----------------------------------CCcccHHHHH
Q 003881 418 EKLAREILSD-PVRVTVGEVGMANEDITQVVHVIP-----------------------------------SDAEKLPWLL 461 (789)
Q Consensus 418 ~~l~~~~l~~-p~~i~i~~~~~~~~~i~q~~~~~~-----------------------------------~~~~k~~~L~ 461 (789)
-+++..+..+ .+.+.+.......-.-.+- ..+. ........+-
T Consensus 195 vdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~-~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~ 273 (824)
T PF02399_consen 195 VDFLASCRPDENIHVIVNTYASPGFSNRRC-TFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFS 273 (824)
T ss_pred HHHHHHhCCCCcEEEEEeeeecCCcccceE-EEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHH
Confidence 8888887654 3333332211110000000 0000 0011112222
Q ss_pred HhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCc--
Q 003881 462 EKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSI-- 539 (789)
Q Consensus 462 ~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v-- 539 (789)
.++..+..+.+|-||+.+...++.+++.......++..+++..+..+. +. =++++|+|+|.++..|+++...
T Consensus 274 ~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~--W~~~~VviYT~~itvG~Sf~~~HF 347 (824)
T PF02399_consen 274 ELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ES--WKKYDVVIYTPVITVGLSFEEKHF 347 (824)
T ss_pred HHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----cc--ccceeEEEEeceEEEEeccchhhc
Confidence 333333346688999999999999999999999999999987766532 22 3468999999999999999764
Q ss_pred cEEEEEcCC----CCHHHHHHHHhhcCCCCCCCcEEEEEEc
Q 003881 540 KSVVNFDIA----RDMDMHVHRIGRTGRAGDKDGTAYTLVT 576 (789)
Q Consensus 540 ~~VI~~d~p----~s~~~yiQriGR~gR~G~k~G~~i~lv~ 576 (789)
+-|.-|=-| .++....|++||+-... ....++.+.
T Consensus 348 ~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~--~~ei~v~~d 386 (824)
T PF02399_consen 348 DSMFAYVKPMSYGPDMVSVYQMLGRVRSLL--DNEIYVYID 386 (824)
T ss_pred eEEEEEecCCCCCCcHHHHHHHHHHHHhhc--cCeEEEEEe
Confidence 335444222 23556799999997765 345555554
No 164
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.18 E-value=2e-10 Score=128.99 Aligned_cols=107 Identities=24% Similarity=0.396 Sum_probs=91.1
Q ss_pred CCEEEEecccccHHHHHHHHHHc------------------CCceeeccCCCCHHHHHHHHHHhhcC--C-cceEEeehh
Q 003881 471 GDVLVFASKKTTVDEIESQLAQK------------------GFKAAALHGDKDQASRMEILQKFKSG--V-YHVLIATDV 529 (789)
Q Consensus 471 ~kvLVF~~s~~~a~~l~~~L~~~------------------g~~v~~lhg~~~~~eR~~~l~~F~~G--~-~~VLVaT~v 529 (789)
.++|||.+....++.|.+.|.+. ......+.|..+..+|++.|++|++- - .-+|++|..
T Consensus 720 ~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstra 799 (1387)
T KOG1016|consen 720 EKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRA 799 (1387)
T ss_pred ceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcc
Confidence 37999999999999999999875 23456789999999999999999863 2 358899999
Q ss_pred hhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCC-CCcEEEEEEcc
Q 003881 530 AARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGD-KDGTAYTLVTQ 577 (789)
Q Consensus 530 ~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~-k~G~~i~lv~~ 577 (789)
..-|+|+-..+.||+||.-|++.--.|.+-|+.|.|+ |+..+|.|+..
T Consensus 800 g~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD 848 (1387)
T KOG1016|consen 800 GSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMD 848 (1387)
T ss_pred ccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhh
Confidence 9999999999999999999999999999999999994 44556666654
No 165
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.10 E-value=2.7e-10 Score=133.21 Aligned_cols=105 Identities=16% Similarity=0.208 Sum_probs=93.1
Q ss_pred CCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCC-cc-eEEeehhhhccCCCCCccEEEEEcCC
Q 003881 471 GDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGV-YH-VLIATDVAARGLDIKSIKSVVNFDIA 548 (789)
Q Consensus 471 ~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~-~~-VLVaT~v~~rGlDI~~v~~VI~~d~p 548 (789)
.++|||++....++.+...|...++....+.|.|+...|.+.+..|..+. .. .|++..++..|||+..+.+|+..|+.
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 48999999999999999999999999999999999999999999998643 33 45677899999999999999999999
Q ss_pred CCHHHHHHHHhhcCCCCCCCcEEEEEE
Q 003881 549 RDMDMHVHRIGRTGRAGDKDGTAYTLV 575 (789)
Q Consensus 549 ~s~~~yiQriGR~gR~G~k~G~~i~lv 575 (789)
||+...-|.|-|++|.|+.+.+-++.+
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~v~r~ 646 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVKVSRF 646 (674)
T ss_pred cChHHHHHHHHHHHHhcccceeeeeee
Confidence 999999999999999996655555444
No 166
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.03 E-value=2.7e-09 Score=114.45 Aligned_cols=73 Identities=21% Similarity=0.195 Sum_probs=58.1
Q ss_pred CCcHHHHHHHH----HHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHH
Q 003881 247 KPTSIQCQALP----IILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 247 ~ptpiQ~~~i~----~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~ 321 (789)
.|+|.|.+.+. .+..+.++|+.+|||+|||++|++|++.++...+... .+.+++|+++|..+..|...++++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~--~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI--QKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc--cccceeEEeccHHHHHHHHHHHHhc
Confidence 36999999554 4557899999999999999999999998876543210 2347899999999999988888765
No 167
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.03 E-value=2.7e-09 Score=114.45 Aligned_cols=73 Identities=21% Similarity=0.195 Sum_probs=58.1
Q ss_pred CCcHHHHHHHH----HHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHH
Q 003881 247 KPTSIQCQALP----IILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 247 ~ptpiQ~~~i~----~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~ 321 (789)
.|+|.|.+.+. .+..+.++|+.+|||+|||++|++|++.++...+... .+.+++|+++|..+..|...++++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~--~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI--QKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc--cccceeEEeccHHHHHHHHHHHHhc
Confidence 36999999554 4557899999999999999999999998876543210 2347899999999999988888765
No 168
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.01 E-value=2.8e-08 Score=122.10 Aligned_cols=298 Identities=17% Similarity=0.191 Sum_probs=165.8
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHH
Q 003881 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (789)
Q Consensus 263 rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~ 342 (789)
+..+|+--+|||||+..+. +...++.. ...|.++||+-++.|-.|+.+++..+........ .-.+..+..
T Consensus 274 ~~G~IWHtqGSGKTlTm~~-~A~~l~~~-----~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk 343 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFK-LARLLLEL-----PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELK 343 (962)
T ss_pred CceEEEeecCCchHHHHHH-HHHHHHhc-----cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHH
Confidence 4689999999999987433 33444443 4679999999999999999999999876432211 223333333
Q ss_pred HHHhcC-CcEEEeChHHHHHHHhhcc--cccCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHH
Q 003881 343 KELKAG-CEIVIATPGRLIDMLKMKA--LTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEK 419 (789)
Q Consensus 343 ~~l~~~-~dIiV~Tp~~L~~~l~~~~--~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~ 419 (789)
..+..+ ..|||||-+.|-..+.... ..-.+--+||+|||||-.. +.....+...+ ++...++||.|+--.-..
T Consensus 344 ~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~---G~~~~~~~~~~-~~a~~~gFTGTPi~~~d~ 419 (962)
T COG0610 344 ELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQY---GELAKLLKKAL-KKAIFIGFTGTPIFKEDK 419 (962)
T ss_pred HHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccc---cHHHHHHHHHh-ccceEEEeeCCccccccc
Confidence 344434 4899999999988875541 1122334689999998432 22222222333 347899999996322111
Q ss_pred H-HHHHhCCCeEEeeccccCcccce-eEEEEe---cC---CC------------------------------------cc
Q 003881 420 L-AREILSDPVRVTVGEVGMANEDI-TQVVHV---IP---SD------------------------------------AE 455 (789)
Q Consensus 420 l-~~~~l~~p~~i~i~~~~~~~~~i-~q~~~~---~~---~~------------------------------------~~ 455 (789)
. ....++++...+..........+ ...+.. +. .. ..
T Consensus 420 ~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 499 (962)
T COG0610 420 DTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAV 499 (962)
T ss_pred cchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchH
Confidence 1 12333333322221111000000 000000 00 00 00
Q ss_pred c----HHHHHHhcCC-CCCCCCEEEEecccccHHHHHHHHHHc-----------C--------C----ceeeccCCCCHH
Q 003881 456 K----LPWLLEKLPG-MIDDGDVLVFASKKTTVDEIESQLAQK-----------G--------F----KAAALHGDKDQA 507 (789)
Q Consensus 456 k----~~~L~~~L~~-~~~~~kvLVF~~s~~~a~~l~~~L~~~-----------g--------~----~v~~lhg~~~~~ 507 (789)
+ ...+...... .....++++.|.++..+..+.+.+... + + .....|.. ...
T Consensus 500 r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~ 578 (962)
T COG0610 500 RLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAK-LKD 578 (962)
T ss_pred HHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHH-HHH
Confidence 0 0011122222 223457777777777554444443321 0 0 00000111 122
Q ss_pred HHHHHHHHh--hcCCcceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCC-C--CCcEEEEEEc
Q 003881 508 SRMEILQKF--KSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG-D--KDGTAYTLVT 576 (789)
Q Consensus 508 eR~~~l~~F--~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G-~--k~G~~i~lv~ 576 (789)
.+.....+| .....+|||.++++-.|.|.|.++++. +|-|.-....+|.+.|+.|.- . ..|..+.|+.
T Consensus 579 ~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 579 EKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred HHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 333444443 456789999999999999999887766 666777778899999999976 2 2355555554
No 169
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.01 E-value=5.7e-10 Score=104.39 Aligned_cols=135 Identities=16% Similarity=0.187 Sum_probs=79.4
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHH
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~ 341 (789)
|+-.++-..+|+|||.-.+.-++...++ .+.++|||.|||.++..+.+.++.. .+++... ...
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~-------~~~rvLvL~PTRvva~em~~aL~~~----~~~~~t~---~~~--- 66 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK-------RRLRVLVLAPTRVVAEEMYEALKGL----PVRFHTN---ARM--- 66 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH-------TT--EEEEESSHHHHHHHHHHTTTS----SEEEEST---TSS---
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH-------ccCeEEEecccHHHHHHHHHHHhcC----CcccCce---eee---
Confidence 3446778899999998755555554443 3677999999999999877666533 3333211 110
Q ss_pred HHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcC--CCceEEEEeccCcHHH
Q 003881 342 FKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR--PDRQTLLFSATMPRKV 417 (789)
Q Consensus 342 ~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~--~~~q~ll~SAT~~~~i 417 (789)
.....+.-|-|+|+..+...+.. ...+..+++||+||||-+--. .-..+..+..+. ....+|++|||+|-..
T Consensus 67 -~~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~--sIA~rg~l~~~~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 67 -RTHFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPT--SIAARGYLRELAESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp -----SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHH--HHHHHHHHHHHHHTTS-EEEEEESS-TT--
T ss_pred -ccccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHH--HHhhheeHHHhhhccCeeEEEEeCCCCCCC
Confidence 02234567899999999888765 555789999999999963211 111122222221 3357999999998553
No 170
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.99 E-value=1.7e-09 Score=123.81 Aligned_cols=311 Identities=18% Similarity=0.256 Sum_probs=185.0
Q ss_pred HHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHH-hhhcCCeEEEE
Q 003881 254 QALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF-AKSHGIRVSAV 332 (789)
Q Consensus 254 ~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~-~~~~~i~v~~~ 332 (789)
..+..+...+-+++-++||+|||.++.--+|..++...... ...+.+.-|+|..+.-+.+.+..- +...+- .
T Consensus 385 ~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~---~~na~v~qprrisaisiaerva~er~e~~g~----t 457 (1282)
T KOG0921|consen 385 EILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGA---SFNAVVSQPRRISAISLAERVANERGEEVGE----T 457 (1282)
T ss_pred HHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccc---cccceeccccccchHHHHHHHHHhhHHhhcc----c
Confidence 34444455666888899999999998888888877653222 233788899998888776554432 222222 2
Q ss_pred ECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchh-ccCCChHHHHHHHhhcCCCceEEEEec
Q 003881 333 YGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM-FDLGFEPQIRSIVGQIRPDRQTLLFSA 411 (789)
Q Consensus 333 ~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m-~~~~f~~~i~~il~~l~~~~q~ll~SA 411 (789)
+|......... -..---|.+||-+.|+.++... +..+.++|+||.|.. .+..|...+..-+..+-++.+.++|||
T Consensus 458 vgy~vRf~Sa~-prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsa 533 (1282)
T KOG0921|consen 458 CGYNVRFDSAT-PRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSA 533 (1282)
T ss_pred ccccccccccc-cccccceeeeccchhhhhhhhc---ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhc
Confidence 22222111100 0112468999999999988644 557788999999952 333344333333333334555556666
Q ss_pred cCcHH--------------------HHHHHHHHhCCCeEEeeccccCc-ccceeE-----------EEEecC--------
Q 003881 412 TMPRK--------------------VEKLAREILSDPVRVTVGEVGMA-NEDITQ-----------VVHVIP-------- 451 (789)
Q Consensus 412 T~~~~--------------------i~~l~~~~l~~p~~i~i~~~~~~-~~~i~q-----------~~~~~~-------- 451 (789)
|+... ++.++...+..+........... ...... ....+.
T Consensus 534 tIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~ 613 (1282)
T KOG0921|consen 534 TIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNEST 613 (1282)
T ss_pred ccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchh
Confidence 65322 11222222211111110000000 000000 000000
Q ss_pred -------CCcc----cHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHc-------CCceeeccCCCCHHHHHHHH
Q 003881 452 -------SDAE----KLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK-------GFKAAALHGDKDQASRMEIL 513 (789)
Q Consensus 452 -------~~~~----k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~-------g~~v~~lhg~~~~~eR~~~l 513 (789)
+... -...++..+....-.+-|+||.+--..+..|..+|... .+.+..+|..+...+..++.
T Consensus 614 ~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf 693 (1282)
T KOG0921|consen 614 RTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVF 693 (1282)
T ss_pred hhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhcc
Confidence 0001 11122222222222457999999999988888888654 46789999999999989999
Q ss_pred HHhhcCCcceEEeehhhhccCCCCCccEEEEEcC------------------CCCHHHHHHHHhhcCCCCCCCcEEEEEE
Q 003881 514 QKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDI------------------ARDMDMHVHRIGRTGRAGDKDGTAYTLV 575 (789)
Q Consensus 514 ~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~------------------p~s~~~yiQriGR~gR~G~k~G~~i~lv 575 (789)
+....|..++++.|.++..-+.|.++..||+.+. +.+....+||.||+||. +.|.|+.++
T Consensus 694 ~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv--R~G~~f~lc 771 (1282)
T KOG0921|consen 694 EPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV--RPGFCFHLC 771 (1282)
T ss_pred CcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee--ccccccccc
Confidence 9999999999999999999999988877775332 22445568999999997 579999887
Q ss_pred cc
Q 003881 576 TQ 577 (789)
Q Consensus 576 ~~ 577 (789)
+.
T Consensus 772 s~ 773 (1282)
T KOG0921|consen 772 SR 773 (1282)
T ss_pred HH
Confidence 53
No 171
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.92 E-value=2.7e-08 Score=116.60 Aligned_cols=317 Identities=20% Similarity=0.239 Sum_probs=190.6
Q ss_pred CcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCC
Q 003881 248 PTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGI 327 (789)
Q Consensus 248 ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i 327 (789)
++|+-.|.+-.+.-...-|.-+.||-|||+++.+|+.-..+. |..+.+|...--||.--.+++.++...+|+
T Consensus 79 ~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~--------gkgVhvVTvNdYLA~RDae~m~~l~~~LGl 150 (822)
T COG0653 79 MRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA--------GKGVHVVTVNDYLARRDAEWMGPLYEFLGL 150 (822)
T ss_pred CChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC--------CCCcEEeeehHHhhhhCHHHHHHHHHHcCC
Confidence 444555566666666778999999999999999998655433 445788888999999889999999999999
Q ss_pred eEEEEECCCChHHHHHHHhcCCcEEEeChHHH-HHHH------hhcccccCceeEEEEeccchhcc----------C---
Q 003881 328 RVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDML------KMKALTMSRVTYLVLDEADRMFD----------L--- 387 (789)
Q Consensus 328 ~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L-~~~l------~~~~~~l~~i~~lVvDEah~m~~----------~--- 387 (789)
.+.+...+....++.... .|||..+|-..| .+.+ ...........+.|+||+|-|+- +
T Consensus 151 svG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~~ 228 (822)
T COG0653 151 SVGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPAE 228 (822)
T ss_pred ceeeccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeecccc
Confidence 999999998776554433 499999997655 1222 11233355688999999996531 1
Q ss_pred ---CChHHHHHHHhhcCCC--------ceEEEEecc-Cc--------------HHH------HHH--HHHH-hCC-----
Q 003881 388 ---GFEPQIRSIVGQIRPD--------RQTLLFSAT-MP--------------RKV------EKL--AREI-LSD----- 427 (789)
Q Consensus 388 ---~f~~~i~~il~~l~~~--------~q~ll~SAT-~~--------------~~i------~~l--~~~~-l~~----- 427 (789)
.....+..++..+... .+.|.++-. +. .++ ... +..+ ..+
T Consensus 229 ~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIV 308 (822)
T COG0653 229 DSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIV 308 (822)
T ss_pred cCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEE
Confidence 0122222332222111 111111111 00 000 000 0000 000
Q ss_pred -------------------------------------------------------------------------------C
Q 003881 428 -------------------------------------------------------------------------------P 428 (789)
Q Consensus 428 -------------------------------------------------------------------------------p 428 (789)
-
T Consensus 309 rd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~ 388 (822)
T COG0653 309 RDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLD 388 (822)
T ss_pred ecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCc
Confidence 0
Q ss_pred eEEeeccccCcccceeEEEEecCCCcccHHHHHHhcCCCC-CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHH
Q 003881 429 VRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQA 507 (789)
Q Consensus 429 ~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~ 507 (789)
+.+.....+....+ ..-.+......|+..++..+.... .+.+|||-..+.+..+.+.+.|.+.+++..+|...-...
T Consensus 389 vv~iPTnrp~~R~D--~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~ 466 (822)
T COG0653 389 VVVIPTNRPIIRLD--EPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAR 466 (822)
T ss_pred eeeccCCCcccCCC--CccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHH
Confidence 00000000000000 000111124456777776665433 456999999999999999999999999998888766543
Q ss_pred HHHHHHHHhhcCCcceEEeehhhhccCCCCCcc-----------EEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEc
Q 003881 508 SRMEILQKFKSGVYHVLIATDVAARGLDIKSIK-----------SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVT 576 (789)
Q Consensus 508 eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~-----------~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~ 576 (789)
+ .-+-.+.--.--|-|||++|+||-||.--. +||--.--.+-.--.|--||+||.| -+|....|++
T Consensus 467 E--A~Iia~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQG-DpG~S~F~lS 543 (822)
T COG0653 467 E--AEIIAQAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQG-DPGSSRFYLS 543 (822)
T ss_pred H--HHHHhhcCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCC-Ccchhhhhhh
Confidence 3 333333222335889999999999997433 3443333333333347789999999 5788777776
Q ss_pred ccc
Q 003881 577 QKE 579 (789)
Q Consensus 577 ~~d 579 (789)
-.|
T Consensus 544 leD 546 (822)
T COG0653 544 LED 546 (822)
T ss_pred hHH
Confidence 554
No 172
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.70 E-value=4.6e-07 Score=95.05 Aligned_cols=132 Identities=22% Similarity=0.265 Sum_probs=96.7
Q ss_pred HcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHH
Q 003881 242 KQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 242 ~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~ 321 (789)
+.--..|++.|..++-.+..|+ |+...||=|||++..+|++.+.+. |..|=||+.+..||..=++++..+
T Consensus 72 r~~g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~--------G~~V~vvT~NdyLA~RD~~~~~~~ 141 (266)
T PF07517_consen 72 RTLGLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ--------GKGVHVVTSNDYLAKRDAEEMRPF 141 (266)
T ss_dssp HHTS----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT--------SS-EEEEESSHHHHHHHHHHHHHH
T ss_pred HHcCCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh--------cCCcEEEeccHHHhhccHHHHHHH
Confidence 3333478889988887776665 999999999999988888777654 556888999999999999999999
Q ss_pred hhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHH-HHhhc------ccccCceeEEEEeccchhc
Q 003881 322 AKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLID-MLKMK------ALTMSRVTYLVLDEADRMF 385 (789)
Q Consensus 322 ~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~-~l~~~------~~~l~~i~~lVvDEah~m~ 385 (789)
...+|+.+.+++.+.+..+.. ... .++|+.+|...|.- .|... ......+.++||||+|.|+
T Consensus 142 y~~LGlsv~~~~~~~~~~~r~-~~Y-~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 142 YEFLGLSVGIITSDMSSEERR-EAY-AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHTT--EEEEETTTEHHHHH-HHH-HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHhhhccccCccccCHHHHH-HHH-hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 999999999999988754432 222 37899999988753 44321 1125678999999999664
No 173
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.60 E-value=6.6e-07 Score=107.34 Aligned_cols=70 Identities=19% Similarity=0.078 Sum_probs=57.6
Q ss_pred HhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEeccCc
Q 003881 345 LKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (789)
Q Consensus 345 l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~ 414 (789)
++....|+++||..|..-+..+.+.+..|..|||||||++....-+..|-.++..-.+..-+.+|||.+.
T Consensus 4 ly~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 4 VYLEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred HhhcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 4455789999999998888888899999999999999998776666666677766666777888888863
No 174
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.47 E-value=5.1e-09 Score=121.14 Aligned_cols=78 Identities=24% Similarity=0.400 Sum_probs=64.9
Q ss_pred ccHHHHHHhcCCCCCC-CCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhc---CCcceEEeehhh
Q 003881 455 EKLPWLLEKLPGMIDD-GDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKS---GVYHVLIATDVA 530 (789)
Q Consensus 455 ~k~~~L~~~L~~~~~~-~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~---G~~~VLVaT~v~ 530 (789)
.|+..|...++++... .+||||.+.....+.|..++...+ ....+.|..+..+|+.++.+|+. ....+|++|.+.
T Consensus 615 ~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~ 693 (696)
T KOG0383|consen 615 GKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAG 693 (696)
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccc
Confidence 4555555556555443 499999999999999999999988 99999999999999999999984 467799999987
Q ss_pred hcc
Q 003881 531 ARG 533 (789)
Q Consensus 531 ~rG 533 (789)
+.|
T Consensus 694 g~g 696 (696)
T KOG0383|consen 694 GLG 696 (696)
T ss_pred cCC
Confidence 654
No 175
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.23 E-value=1.4e-05 Score=96.19 Aligned_cols=74 Identities=19% Similarity=0.277 Sum_probs=58.1
Q ss_pred CcceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCC-CCCc-------EEE-EEEccccHHHHHHHHHHH
Q 003881 520 VYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG-DKDG-------TAY-TLVTQKEARFAGELVNSL 590 (789)
Q Consensus 520 ~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G-~k~G-------~~i-~lv~~~d~~~~~~lv~~l 590 (789)
..++|++-.++.+|-|.|+|=.++-+....+...-.|-+||..|.- +..| ... ++++.....++..|..-+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 5789999999999999999999999998888989999999999964 1222 122 334556778888888877
Q ss_pred HHc
Q 003881 591 IAA 593 (789)
Q Consensus 591 ~~~ 593 (789)
...
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 554
No 176
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.21 E-value=5.8e-07 Score=105.70 Aligned_cols=258 Identities=20% Similarity=0.181 Sum_probs=156.4
Q ss_pred CcHHHHHHHHHHHc-CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003881 248 PTSIQCQALPIILS-GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (789)
Q Consensus 248 ptpiQ~~~i~~il~-grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~ 326 (789)
..|+|.+.+..+.. ..++++.+|||+|||++|.++++..+...+ +.++++++|-..|+..-...+.+.....|
T Consensus 928 fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p------~~kvvyIap~kalvker~~Dw~~r~~~~g 1001 (1230)
T KOG0952|consen 928 FNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYP------GSKVVYIAPDKALVKERSDDWSKRDELPG 1001 (1230)
T ss_pred cCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCC------CccEEEEcCCchhhcccccchhhhcccCC
Confidence 34455555544433 257889999999999999998887665443 46799999999999888888877666568
Q ss_pred CeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHh--hcccccCceeEEEEeccchhccCCChHHHHHHH-------
Q 003881 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLK--MKALTMSRVTYLVLDEADRMFDLGFEPQIRSIV------- 397 (789)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~--~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il------- 397 (789)
++++-+.|..... ... ...++|+|+||++...+.. .....+.+++.+|+||.|.+.+. ..+.+..+.
T Consensus 1002 ~k~ie~tgd~~pd--~~~-v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~-rgPVle~ivsr~n~~s 1077 (1230)
T KOG0952|consen 1002 IKVIELTGDVTPD--VKA-VREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED-RGPVLEVIVSRMNYIS 1077 (1230)
T ss_pred ceeEeccCccCCC--hhh-eecCceEEcccccccCccccccchhhhccccceeecccccccCC-CcceEEEEeeccccCc
Confidence 9999888877654 122 2348999999999988876 34556789999999999976543 233322222
Q ss_pred hhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCc-ccceeEEE------EecCCCcccHHHHHHhcCCCCCC
Q 003881 398 GQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMA-NEDITQVV------HVIPSDAEKLPWLLEKLPGMIDD 470 (789)
Q Consensus 398 ~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~-~~~i~q~~------~~~~~~~~k~~~L~~~L~~~~~~ 470 (789)
....+.++.+.+|.-+ .+..+++.|+-..+. . +..... .......+ +.++....+.......++...+.
T Consensus 1078 ~~t~~~vr~~glsta~-~na~dla~wl~~~~~-~--nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~ 1153 (1230)
T KOG0952|consen 1078 SQTEEPVRYLGLSTAL-ANANDLADWLNIKDM-Y--NFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPI 1153 (1230)
T ss_pred cccCcchhhhhHhhhh-hccHHHHHHhCCCCc-C--CCCcccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCC
Confidence 1223345566655443 344566666544333 0 000111 11111111 22222233444455666666677
Q ss_pred CCEEEEecccccHH----HHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCc
Q 003881 471 GDVLVFASKKTTVD----EIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVY 521 (789)
Q Consensus 471 ~kvLVF~~s~~~a~----~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~ 521 (789)
.++|||+.+..... .+...+....-+...++- +..+-+.++...+....
T Consensus 1154 ~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~--de~e~e~~~~~~~d~~L 1206 (1230)
T KOG0952|consen 1154 KPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLNM--DELELEIIMSKVRDTNL 1206 (1230)
T ss_pred CceEEEeecccccccchHhHHhhccCCCCchhccCC--CHHHHHHHHHHhcccch
Confidence 79999999876543 333333333333344443 35555666665555433
No 177
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.20 E-value=1.7e-05 Score=81.81 Aligned_cols=73 Identities=21% Similarity=0.295 Sum_probs=51.6
Q ss_pred CCcHHHHHHHHHHHcCCC-EEEEccCCChhhHHHHHHHHHHHhcCc-cccccCCCeEEEEcCcHHHHHHHHHHHHH
Q 003881 247 KPTSIQCQALPIILSGRD-IIGIAKTGSGKTAAFVLPMIVHIMDQP-ELQKEEGPIGVICAPTRELAHQIYLETKK 320 (789)
Q Consensus 247 ~ptpiQ~~~i~~il~grd-vll~a~TGsGKTla~llpil~~l~~~~-~~~~~~gp~vLIl~PtreLa~Qi~~~~~~ 320 (789)
++.+.|.+|+..+++... .++.+|.|+|||.+ +..++.+++... ......+.++||++|+...+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~-l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTT-LASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHH-HHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHH-HHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 467899999999999998 99999999999964 445555552210 11124467799999999999999888887
No 178
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.10 E-value=0.00026 Score=82.59 Aligned_cols=73 Identities=15% Similarity=0.244 Sum_probs=58.4
Q ss_pred CcceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCC-CCCcEEE-----------EEEccccHHHHHHHH
Q 003881 520 VYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG-DKDGTAY-----------TLVTQKEARFAGELV 587 (789)
Q Consensus 520 ~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G-~k~G~~i-----------~lv~~~d~~~~~~lv 587 (789)
..++|.+-.++-+|-|-|+|=+++-+....|...=+|.+||..|.- +..|.-+ +|+...+..++..|+
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~Lq 562 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKALQ 562 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999975 3334333 355666777887777
Q ss_pred HHHHH
Q 003881 588 NSLIA 592 (789)
Q Consensus 588 ~~l~~ 592 (789)
+.+..
T Consensus 563 kEI~~ 567 (985)
T COG3587 563 KEIND 567 (985)
T ss_pred HHHHH
Confidence 65543
No 179
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.07 E-value=2.2e-05 Score=79.51 Aligned_cols=123 Identities=19% Similarity=0.205 Sum_probs=72.2
Q ss_pred CCcHHHHHHHHHHHcCC--CEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhh
Q 003881 247 KPTSIQCQALPIILSGR--DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (789)
Q Consensus 247 ~ptpiQ~~~i~~il~gr--dvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~ 324 (789)
+|++-|.+++..++... -+++.++.|+|||.+ +..+...+.. .+.++++++||...+..+.+.+
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~-------~g~~v~~~apT~~Aa~~L~~~~------ 66 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA-------AGKRVIGLAPTNKAAKELREKT------ 66 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH-------TT--EEEEESSHHHHHHHHHHH------
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh-------CCCeEEEECCcHHHHHHHHHhh------
Confidence 37889999999997543 366779999999964 3334444322 3577999999998887654441
Q ss_pred cCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhccc----ccCceeEEEEeccchhccCCChHHHHHHHhhc
Q 003881 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL----TMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI 400 (789)
Q Consensus 325 ~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~----~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l 400 (789)
++.+ .|-..++........ .+...++||||||-.+. ...+..++..+
T Consensus 67 -~~~a------------------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~ 117 (196)
T PF13604_consen 67 -GIEA------------------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLA 117 (196)
T ss_dssp -TS-E------------------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS
T ss_pred -Ccch------------------------hhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHH
Confidence 2222 222222221111111 15566799999999754 34666777776
Q ss_pred CC-CceEEEEecc
Q 003881 401 RP-DRQTLLFSAT 412 (789)
Q Consensus 401 ~~-~~q~ll~SAT 412 (789)
+. ..++|++.-+
T Consensus 118 ~~~~~klilvGD~ 130 (196)
T PF13604_consen 118 KKSGAKLILVGDP 130 (196)
T ss_dssp -T-T-EEEEEE-T
T ss_pred HhcCCEEEEECCc
Confidence 65 6677777665
No 180
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.06 E-value=4.4e-05 Score=86.26 Aligned_cols=86 Identities=21% Similarity=0.286 Sum_probs=69.7
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHH
Q 003881 238 HAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLE 317 (789)
Q Consensus 238 ~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~ 317 (789)
..+...++.++..-|..|+..+|+..-.||.+|.|+|||.+ ...++.|+.++ ....+||++|+...+.|+.+.
T Consensus 401 ~~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvt-sa~IVyhl~~~------~~~~VLvcApSNiAVDqLaeK 473 (935)
T KOG1802|consen 401 RRFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVT-SATIVYHLARQ------HAGPVLVCAPSNIAVDQLAEK 473 (935)
T ss_pred hhhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceeh-hHHHHHHHHHh------cCCceEEEcccchhHHHHHHH
Confidence 35666788899999999999999999999999999999987 45556666554 345589999999999999888
Q ss_pred HHHHhhhcCCeEEEEEC
Q 003881 318 TKKFAKSHGIRVSAVYG 334 (789)
Q Consensus 318 ~~~~~~~~~i~v~~~~g 334 (789)
+.+. +++|+-++.
T Consensus 474 Ih~t----gLKVvRl~a 486 (935)
T KOG1802|consen 474 IHKT----GLKVVRLCA 486 (935)
T ss_pred HHhc----CceEeeeeh
Confidence 8775 677766654
No 181
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.05 E-value=3.3e-05 Score=81.52 Aligned_cols=167 Identities=12% Similarity=0.103 Sum_probs=104.6
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHHc----------CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCe
Q 003881 231 GFSTQLMHAISKQGYEKPTSIQCQALPIILS----------GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPI 300 (789)
Q Consensus 231 ~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~----------grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~ 300 (789)
.||+.++.. ..+...|.+++-.+.+ ....++-..||.||--+..-.|+.+++.. ..+
T Consensus 27 ~lp~~~~~~------g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G-------r~r 93 (303)
T PF13872_consen 27 HLPEEVIDS------GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG-------RKR 93 (303)
T ss_pred CCCHHHHhc------ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC-------CCc
Confidence 566655442 3578889998877652 34578888999999877555566665442 345
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhc---cccc-------
Q 003881 301 GVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK---ALTM------- 370 (789)
Q Consensus 301 vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~---~~~l------- 370 (789)
+|+|..+-.|-....+.++.+... .+.+..+.. .... ....-...||++||..|...-... ...|
T Consensus 94 ~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~-~~~~---~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~ 168 (303)
T PF13872_consen 94 AVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNK-FKYG---DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWC 168 (303)
T ss_pred eEEEECChhhhhHHHHHHHHhCCC-cccceechh-hccC---cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHH
Confidence 899999999998888888876432 232222211 0000 001123569999999998765321 1111
Q ss_pred --CceeEEEEeccchhccCCCh--------HHHHHHHhhcCCCceEEEEeccCcHH
Q 003881 371 --SRVTYLVLDEADRMFDLGFE--------PQIRSIVGQIRPDRQTLLFSATMPRK 416 (789)
Q Consensus 371 --~~i~~lVvDEah~m~~~~f~--------~~i~~il~~l~~~~q~ll~SAT~~~~ 416 (789)
..=.+|||||||.+.+..-. ..+..+-+.++ +.+++.+|||-..+
T Consensus 169 g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP-~ARvvY~SATgase 223 (303)
T PF13872_consen 169 GEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLP-NARVVYASATGASE 223 (303)
T ss_pred hcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCC-CCcEEEecccccCC
Confidence 11258999999998876431 23444555564 55599999997544
No 182
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.03 E-value=0.00011 Score=75.06 Aligned_cols=153 Identities=16% Similarity=0.260 Sum_probs=100.7
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHc---CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeE
Q 003881 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILS---GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIG 301 (789)
Q Consensus 225 ~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~---grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~v 301 (789)
.+|.....|..|+=.+... ...++.|.+.+..+.+ +.+.+...-||.|||.+ ++|++..++... ...+
T Consensus 3 ~~w~p~~~P~wLl~E~e~~--iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg------~~Lv 73 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIESN--ILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADG------SRLV 73 (229)
T ss_pred CCCCchhChHHHHHHHHcC--ceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCC------CcEE
Confidence 3566666677776665533 4689999999999885 57999999999999987 899999887653 3456
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhh-cCCeEEEEE--CCCChH----HHHH----HHhcCCcEEEeChHHHHHHHhhc----
Q 003881 302 VICAPTRELAHQIYLETKKFAKS-HGIRVSAVY--GGMSKL----DQFK----ELKAGCEIVIATPGRLIDMLKMK---- 366 (789)
Q Consensus 302 LIl~PtreLa~Qi~~~~~~~~~~-~~i~v~~~~--gg~~~~----~~~~----~l~~~~dIiV~Tp~~L~~~l~~~---- 366 (789)
.+++|. .|..|..+.+...+.. .+-++..+- -..... ..+. .......|+++||+.++.+.-..
T Consensus 74 rviVpk-~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l 152 (229)
T PF12340_consen 74 RVIVPK-ALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERL 152 (229)
T ss_pred EEEcCH-HHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHH
Confidence 778885 7999999888866543 232332221 112111 1122 22345679999999987653211
Q ss_pred ---c-----------cccCceeEEEEeccchhccC
Q 003881 367 ---A-----------LTMSRVTYLVLDEADRMFDL 387 (789)
Q Consensus 367 ---~-----------~~l~~i~~lVvDEah~m~~~ 387 (789)
. ..+.....-|+||+|.++..
T Consensus 153 ~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~~ 187 (229)
T PF12340_consen 153 QDGKPEEARELLKIQKWLDEHSRDILDESDEILSV 187 (229)
T ss_pred HhcCHHHHHHHHHHHHHHHhcCCeEeECchhccCc
Confidence 0 01334455799999987653
No 183
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.00 E-value=0.00073 Score=80.37 Aligned_cols=67 Identities=18% Similarity=0.232 Sum_probs=53.8
Q ss_pred CCCcHHHHHHHHHHHcC-CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHH
Q 003881 246 EKPTSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK 320 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~g-rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~ 320 (789)
..+++.|.+++..++.. ..+++.+|+|+|||.+ +..++.++.. .+.++|+++||...+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t-~~~ii~~~~~-------~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRT-LVELIRQLVK-------RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHH-HHHHHHHHHH-------cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 46799999999999876 5678899999999975 4455555543 255799999999999998877765
No 184
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.77 E-value=8.1e-05 Score=75.24 Aligned_cols=146 Identities=16% Similarity=0.197 Sum_probs=73.9
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHH-------HHHH
Q 003881 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI-------YLET 318 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi-------~~~~ 318 (789)
...++.|..++..++...-+++.++.|+|||+.++..++..+... .-.+++|+-|+.+....+ .+.+
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g------~~~kiii~Rp~v~~~~~lGflpG~~~eK~ 76 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG------EYDKIIITRPPVEAGEDLGFLPGDLEEKM 76 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT------S-SEEEEEE-S--TT----SS--------
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC------CCcEEEEEecCCCCccccccCCCCHHHHH
Confidence 446789999999999888899999999999999888888777542 234577887776432111 1111
Q ss_pred HHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHh
Q 003881 319 KKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVG 398 (789)
Q Consensus 319 ~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~ 398 (789)
.-|+...--. ....-.......+.....|-+.++.-+ +-. .+. -.+||||||+.+. ..++..++.
T Consensus 77 ~p~~~p~~d~----l~~~~~~~~~~~~~~~~~Ie~~~~~~i----RGr--t~~-~~~iIvDEaQN~t----~~~~k~ilT 141 (205)
T PF02562_consen 77 EPYLRPIYDA----LEELFGKEKLEELIQNGKIEIEPLAFI----RGR--TFD-NAFIIVDEAQNLT----PEELKMILT 141 (205)
T ss_dssp -TTTHHHHHH----HTTTS-TTCHHHHHHTTSEEEEEGGGG----TT----B--SEEEEE-SGGG------HHHHHHHHT
T ss_pred HHHHHHHHHH----HHHHhChHhHHHHhhcCeEEEEehhhh----cCc--ccc-ceEEEEecccCCC----HHHHHHHHc
Confidence 1111100000 000001112223333444555543221 111 122 3789999999854 458889999
Q ss_pred hcCCCceEEEEecc
Q 003881 399 QIRPDRQTLLFSAT 412 (789)
Q Consensus 399 ~l~~~~q~ll~SAT 412 (789)
++..+.+++++.-.
T Consensus 142 R~g~~skii~~GD~ 155 (205)
T PF02562_consen 142 RIGEGSKIIITGDP 155 (205)
T ss_dssp TB-TT-EEEEEE--
T ss_pred ccCCCcEEEEecCc
Confidence 99888888876654
No 185
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.74 E-value=3.6e-05 Score=75.82 Aligned_cols=78 Identities=23% Similarity=0.373 Sum_probs=58.4
Q ss_pred CCCEEEEecccccHHHHHHHHHHcCC--ceeeccCCCCHHHHHHHHHHhhcCCcceEEeeh--hhhccCCCCC--ccEEE
Q 003881 470 DGDVLVFASKKTTVDEIESQLAQKGF--KAAALHGDKDQASRMEILQKFKSGVYHVLIATD--VAARGLDIKS--IKSVV 543 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~g~--~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~--v~~rGlDI~~--v~~VI 543 (789)
++++|||++++..++.+.+.|..... .+.++.. ...++..+++.|+.+...||+++. .+.+|+|+++ ++.||
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vi 86 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVI 86 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheee
Confidence 48999999999999999999976531 1223332 355788999999999999999998 8899999997 88899
Q ss_pred EEcCCC
Q 003881 544 NFDIAR 549 (789)
Q Consensus 544 ~~d~p~ 549 (789)
...+|.
T Consensus 87 i~glPf 92 (167)
T PF13307_consen 87 IVGLPF 92 (167)
T ss_dssp EES---
T ss_pred ecCCCC
Confidence 988774
No 186
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.69 E-value=0.00015 Score=80.28 Aligned_cols=107 Identities=19% Similarity=0.220 Sum_probs=67.2
Q ss_pred EEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHH
Q 003881 265 IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE 344 (789)
Q Consensus 265 vll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~ 344 (789)
+||.+..|||||+. ++.++..+.. ...+..++++++...|...+...+..... .
T Consensus 4 ~~I~G~aGTGKTvl-a~~l~~~l~~-----~~~~~~~~~l~~n~~l~~~l~~~l~~~~~----------~---------- 57 (352)
T PF09848_consen 4 ILITGGAGTGKTVL-ALNLAKELQN-----SEEGKKVLYLCGNHPLRNKLREQLAKKYN----------P---------- 57 (352)
T ss_pred EEEEecCCcCHHHH-HHHHHHHhhc-----cccCCceEEEEecchHHHHHHHHHhhhcc----------c----------
Confidence 67889999999987 3444444411 13466789999999999877777665430 0
Q ss_pred HhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCC-------ChHHHHHHHhh
Q 003881 345 LKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG-------FEPQIRSIVGQ 399 (789)
Q Consensus 345 l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~-------f~~~i~~il~~ 399 (789)
......+..+..++..+.........+++|||||||+|.... ...++..++..
T Consensus 58 --~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 --KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred --chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 001223344444444333223456688999999999998731 24566666665
No 187
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.68 E-value=0.0004 Score=81.55 Aligned_cols=142 Identities=20% Similarity=0.214 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeE
Q 003881 250 SIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRV 329 (789)
Q Consensus 250 piQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v 329 (789)
..|+.++..++..+-+++.++.|+|||.+ +..++..+...... ...+++++++||--.|..+.+.+......+...
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~-v~~ll~~l~~~~~~--~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~- 223 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTT-VARLLLALVKQSPK--QGKLRIALAAPTGKAAARLAESLRKAVKNLAAA- 223 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHH-HHHHHHHHHHhccc--cCCCcEEEECCcHHHHHHHHHHHHhhhcccccc-
Confidence 79999999999999999999999999975 44444444332110 113578999999988887777665543221110
Q ss_pred EEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhh------cccccCceeEEEEeccchhccCCChHHHHHHHhhcCCC
Q 003881 330 SAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM------KALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD 403 (789)
Q Consensus 330 ~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~------~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~ 403 (789)
. .+.....+-..|-.+|+..... ...+.-.+++||||||-++- ...+..++..+++.
T Consensus 224 --------~-----~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~~ 286 (586)
T TIGR01447 224 --------E-----ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPPN 286 (586)
T ss_pred --------h-----hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCCC
Confidence 0 0001112224454444433211 11123367999999999643 34667788888889
Q ss_pred ceEEEEecc
Q 003881 404 RQTLLFSAT 412 (789)
Q Consensus 404 ~q~ll~SAT 412 (789)
.++|++.=.
T Consensus 287 ~rlIlvGD~ 295 (586)
T TIGR01447 287 TKLILLGDK 295 (586)
T ss_pred CEEEEECCh
Confidence 999988766
No 188
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.62 E-value=0.00045 Score=81.27 Aligned_cols=142 Identities=21% Similarity=0.235 Sum_probs=89.9
Q ss_pred cHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCe
Q 003881 249 TSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIR 328 (789)
Q Consensus 249 tpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~ 328 (789)
.++|+.|+-..+..+-+++.+++|+|||.+ +..++..+++.. ......+++++||...|..+.+.+.......++.
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~-v~~ll~~l~~~~---~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~ 229 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTT-VAKLLAALIQLA---DGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 229 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHH-HHHHHHHHHHhc---CCCCcEEEEECCcHHHHHHHHHHHHhhhhccccc
Confidence 589999999999999999999999999975 444444443321 1123568899999999988877766544322210
Q ss_pred EEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHh------hcccccCceeEEEEeccchhccCCChHHHHHHHhhcCC
Q 003881 329 VSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLK------MKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP 402 (789)
Q Consensus 329 v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~------~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~ 402 (789)
. .+......-..|-.+|+.... ....+.-.+++||||||-++ + ...+..++..+++
T Consensus 230 -----------~---~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv-d---~~lm~~ll~al~~ 291 (615)
T PRK10875 230 -----------D---EQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV-D---LPMMARLIDALPP 291 (615)
T ss_pred -----------h---hhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc-c---HHHHHHHHHhccc
Confidence 0 000001112234344432211 11112335689999999964 2 4566778888999
Q ss_pred CceEEEEecc
Q 003881 403 DRQTLLFSAT 412 (789)
Q Consensus 403 ~~q~ll~SAT 412 (789)
..++|++.-.
T Consensus 292 ~~rlIlvGD~ 301 (615)
T PRK10875 292 HARVIFLGDR 301 (615)
T ss_pred CCEEEEecch
Confidence 9999988766
No 189
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.60 E-value=0.00028 Score=82.74 Aligned_cols=77 Identities=16% Similarity=0.132 Sum_probs=53.1
Q ss_pred CCcHHHHHHHHHHH----cCCCEEEEccCCChhhHHHHHHHHHHHhcCcc----------c------cc-----------
Q 003881 247 KPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPE----------L------QK----------- 295 (789)
Q Consensus 247 ~ptpiQ~~~i~~il----~grdvll~a~TGsGKTla~llpil~~l~~~~~----------~------~~----------- 295 (789)
+|+|.|...+.-++ ...+.++..|||+|||++.+-..|.+...+.. . ..
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 67888988776665 45789999999999998866555554432210 0 00
Q ss_pred -------cCCCeEEEEcCcHHHHHHHHHHHHHHhh
Q 003881 296 -------EEGPIGVICAPTRELAHQIYLETKKFAK 323 (789)
Q Consensus 296 -------~~gp~vLIl~PtreLa~Qi~~~~~~~~~ 323 (789)
-..|++.+-.-|..-..|+.+++++..-
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y 135 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGY 135 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCC
Confidence 0136777777777777889999888643
No 190
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.59 E-value=0.00015 Score=81.89 Aligned_cols=66 Identities=23% Similarity=0.368 Sum_probs=51.7
Q ss_pred CCCcHHHHHHHHHHHcCCC-EEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHH
Q 003881 246 EKPTSIQCQALPIILSGRD-IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETK 319 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~grd-vll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~ 319 (789)
..+.+-|.+|+...++.++ .++.+|+|+|||.+ +.-++..++++ +.++||++||.+.+..+.+.+.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~T-lvEiI~qlvk~-------~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRT-LVEIISQLVKQ-------KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceee-HHHHHHHHHHc-------CCeEEEEcCchHHHHHHHHHhc
Confidence 3567899999999998866 56679999999987 44445555543 5779999999999999988543
No 191
>PRK10536 hypothetical protein; Provisional
Probab=97.54 E-value=0.0014 Score=68.26 Aligned_cols=146 Identities=14% Similarity=0.122 Sum_probs=81.0
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHH-------HHHH
Q 003881 244 GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAH-------QIYL 316 (789)
Q Consensus 244 g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~-------Qi~~ 316 (789)
++...+..|...+.++.+...+++.+++|+|||+.++..++..++.. .-.+++|.-|+.+... .+.+
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~------~~~kIiI~RP~v~~ge~LGfLPG~~~e 129 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK------DVDRIIVTRPVLQADEDLGFLPGDIAE 129 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC------CeeEEEEeCCCCCchhhhCcCCCCHHH
Confidence 34566789999999999988899999999999987666666555332 1234566666644221 1112
Q ss_pred HHHHHhhhcCCeEEEEECCCChHHHHHHHh--cCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHH
Q 003881 317 ETKKFAKSHGIRVSAVYGGMSKLDQFKELK--AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIR 394 (789)
Q Consensus 317 ~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~--~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~ 394 (789)
.+..|....--....+.+. ..+..+. ....|-|+... +++-. .| .-.+||||||+.+- ..++.
T Consensus 130 K~~p~~~pi~D~L~~~~~~----~~~~~~~~~~~~~Iei~~l~----ymRGr--tl-~~~~vIvDEaqn~~----~~~~k 194 (262)
T PRK10536 130 KFAPYFRPVYDVLVRRLGA----SFMQYCLRPEIGKVEIAPFA----YMRGR--TF-ENAVVILDEAQNVT----AAQMK 194 (262)
T ss_pred HHHHHHHHHHHHHHHHhCh----HHHHHHHHhccCcEEEecHH----HhcCC--cc-cCCEEEEechhcCC----HHHHH
Confidence 2222211100000000111 1122221 12334444432 22211 12 33789999999854 36788
Q ss_pred HHHhhcCCCceEEEEe
Q 003881 395 SIVGQIRPDRQTLLFS 410 (789)
Q Consensus 395 ~il~~l~~~~q~ll~S 410 (789)
.++.++..+.++|++.
T Consensus 195 ~~ltR~g~~sk~v~~G 210 (262)
T PRK10536 195 MFLTRLGENVTVIVNG 210 (262)
T ss_pred HHHhhcCCCCEEEEeC
Confidence 8888888877777654
No 192
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.49 E-value=0.00097 Score=80.48 Aligned_cols=126 Identities=21% Similarity=0.140 Sum_probs=79.8
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003881 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~ 325 (789)
..+++-|.+|+..+...+-+++.+..|+|||.+ +-.++..+... .....+++++||-..|..+.+. .
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~-l~~i~~~~~~~-----~~~~~v~l~ApTg~AA~~L~e~-------~ 388 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTI-TRAIIELAEEL-----GGLLPVGLAAPTGRAAKRLGEV-------T 388 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHH-HHHHHHHHHHc-----CCCceEEEEeCchHHHHHHHHh-------c
Confidence 579999999999999999999999999999964 33333333221 0114578899998887654322 1
Q ss_pred CCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHh-----hcccccCceeEEEEeccchhccCCChHHHHHHHhhc
Q 003881 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLK-----MKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI 400 (789)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~-----~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l 400 (789)
+... .|..+|+.... .........++||||||+++- ...+..++..+
T Consensus 389 g~~a------------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd----~~~~~~Ll~~~ 440 (720)
T TIGR01448 389 GLTA------------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMD----TWLALSLLAAL 440 (720)
T ss_pred CCcc------------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccCC----HHHHHHHHHhC
Confidence 2211 11111111100 000112357899999999753 33556777788
Q ss_pred CCCceEEEEecc
Q 003881 401 RPDRQTLLFSAT 412 (789)
Q Consensus 401 ~~~~q~ll~SAT 412 (789)
+...++|++.-+
T Consensus 441 ~~~~rlilvGD~ 452 (720)
T TIGR01448 441 PDHARLLLVGDT 452 (720)
T ss_pred CCCCEEEEECcc
Confidence 888888887766
No 193
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.39 E-value=0.0006 Score=71.81 Aligned_cols=82 Identities=22% Similarity=0.419 Sum_probs=65.4
Q ss_pred HHHHHhhcCCcceEEeehhhhccCCCCC--------ccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccc---c
Q 003881 511 EILQKFKSGVYHVLIATDVAARGLDIKS--------IKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK---E 579 (789)
Q Consensus 511 ~~l~~F~~G~~~VLVaT~v~~rGlDI~~--------v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~---d 579 (789)
...+.|++|+..|+|.+++++.|+.+.. -++-|.+.+||+.+..+|.+||++|.|+..+-.|.++..+ +
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 4567999999999999999999998874 3456678999999999999999999997666666655443 5
Q ss_pred HHHHHHHHHHHHH
Q 003881 580 ARFAGELVNSLIA 592 (789)
Q Consensus 580 ~~~~~~lv~~l~~ 592 (789)
.+++..+.+.|..
T Consensus 132 ~Rfas~va~rL~s 144 (278)
T PF13871_consen 132 RRFASTVARRLES 144 (278)
T ss_pred HHHHHHHHHHHhh
Confidence 6666666666644
No 194
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.14 E-value=0.0021 Score=76.31 Aligned_cols=138 Identities=20% Similarity=0.205 Sum_probs=85.9
Q ss_pred cCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCC-EEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCc
Q 003881 229 DCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRD-IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (789)
Q Consensus 229 ~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grd-vll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~Pt 307 (789)
...+.+.+... -+..+..-|++|+-.++..+| .||.+=+|+|||.. +..++..++. .|.++|+.+=|
T Consensus 655 ~~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTt-I~~LIkiL~~-------~gkkVLLtsyT 722 (1100)
T KOG1805|consen 655 SKVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTT-ISLLIKILVA-------LGKKVLLTSYT 722 (1100)
T ss_pred ccccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhh-HHHHHHHHHH-------cCCeEEEEehh
Confidence 33455555443 235678899999999988876 56678899999975 3333333322 36779999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHH-----------------HHHHhcCCcEEEeChHHHHHHHhhccccc
Q 003881 308 RELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ-----------------FKELKAGCEIVIATPGRLIDMLKMKALTM 370 (789)
Q Consensus 308 reLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~-----------------~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l 370 (789)
...+..+.-.++.+ ++...-+-.+.....+ ++.......||.||--.+.+.+ +..
T Consensus 723 hsAVDNILiKL~~~----~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl----f~~ 794 (1100)
T KOG1805|consen 723 HSAVDNILIKLKGF----GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL----FVN 794 (1100)
T ss_pred hHHHHHHHHHHhcc----CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh----hhc
Confidence 88777775444443 3332211112222222 2233445788888865555443 345
Q ss_pred CceeEEEEeccchhcc
Q 003881 371 SRVTYLVLDEADRMFD 386 (789)
Q Consensus 371 ~~i~~lVvDEah~m~~ 386 (789)
..++|+|||||-.|..
T Consensus 795 R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 795 RQFDYCIIDEASQILL 810 (1100)
T ss_pred cccCEEEEcccccccc
Confidence 6799999999998753
No 195
>PF13245 AAA_19: Part of AAA domain
Probab=97.10 E-value=0.0017 Score=54.94 Aligned_cols=53 Identities=21% Similarity=0.301 Sum_probs=37.2
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHH
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLET 318 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~ 318 (789)
..-+++.++.|+|||.. ++.++.+++.... ..+..+||++||+..+.++.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~-~~~~i~~l~~~~~---~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTT-LAARIAELLAARA---DPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHHHHhc---CCCCeEEEECCCHHHHHHHHHHH
Confidence 34455699999999976 4555555543110 11567999999999999887776
No 196
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.05 E-value=0.0084 Score=72.77 Aligned_cols=124 Identities=18% Similarity=0.162 Sum_probs=76.5
Q ss_pred CCCcHHHHHHHHHHHcC-CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhh
Q 003881 246 EKPTSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~g-rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~ 324 (789)
..+++-|.+|+..++.+ +-+++.++.|+|||.. +-.+..++.. .+..+++++||--.|..+.+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl--l~~i~~~~~~------~g~~V~~~ApTg~Aa~~L~~~------- 415 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM--LKAAREAWEA------AGYRVIGAALSGKAAEGLQAE------- 415 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH--HHHHHHHHHh------CCCeEEEEeCcHHHHHHHHhc-------
Confidence 46899999999999875 5678899999999964 4444444332 367799999997766544321
Q ss_pred cCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhc-CCC
Q 003881 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPD 403 (789)
Q Consensus 325 ~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l-~~~ 403 (789)
.++... |-.+++..+......+...++||||||-++-.. .+..++... ...
T Consensus 416 ~g~~a~------------------------Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~~----~~~~Ll~~~~~~~ 467 (744)
T TIGR02768 416 SGIESR------------------------TLASLEYAWANGRDLLSDKDVLVIDEAGMVGSR----QMARVLKEAEEAG 467 (744)
T ss_pred cCCcee------------------------eHHHHHhhhccCcccCCCCcEEEEECcccCCHH----HHHHHHHHHHhcC
Confidence 233221 112221111222334567899999999975432 344455432 356
Q ss_pred ceEEEEecc
Q 003881 404 RQTLLFSAT 412 (789)
Q Consensus 404 ~q~ll~SAT 412 (789)
.++|++.=+
T Consensus 468 ~kliLVGD~ 476 (744)
T TIGR02768 468 AKVVLVGDP 476 (744)
T ss_pred CEEEEECCh
Confidence 677777644
No 197
>PRK08181 transposase; Validated
Probab=96.99 E-value=0.0053 Score=65.14 Aligned_cols=111 Identities=12% Similarity=0.188 Sum_probs=60.3
Q ss_pred HHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCC
Q 003881 257 PIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGM 336 (789)
Q Consensus 257 ~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~ 336 (789)
.++-.++++++++++|+|||..+ ..+..++.. .+..+++ ++..+|..++..... .
T Consensus 101 ~~~~~~~nlll~Gp~GtGKTHLa-~Aia~~a~~-------~g~~v~f-~~~~~L~~~l~~a~~------~---------- 155 (269)
T PRK08181 101 SWLAKGANLLLFGPPGGGKSHLA-AAIGLALIE-------NGWRVLF-TRTTDLVQKLQVARR------E---------- 155 (269)
T ss_pred HHHhcCceEEEEecCCCcHHHHH-HHHHHHHHH-------cCCceee-eeHHHHHHHHHHHHh------C----------
Confidence 35667889999999999999542 223333332 2334444 455566655421100 0
Q ss_pred ChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCC-hHHHHHHHhhcCCCceEEEEeccCcH
Q 003881 337 SKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGF-EPQIRSIVGQIRPDRQTLLFSATMPR 415 (789)
Q Consensus 337 ~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f-~~~i~~il~~l~~~~q~ll~SAT~~~ 415 (789)
.+...++. .+.++++|||||.+.+....+ ...+..+++.......+|+.|-..+.
T Consensus 156 -----------------~~~~~~l~-------~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~ 211 (269)
T PRK08181 156 -----------------LQLESAIA-------KLDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFG 211 (269)
T ss_pred -----------------CcHHHHHH-------HHhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHH
Confidence 01111222 234678899999997543322 23455666654444455555555544
Q ss_pred H
Q 003881 416 K 416 (789)
Q Consensus 416 ~ 416 (789)
.
T Consensus 212 ~ 212 (269)
T PRK08181 212 E 212 (269)
T ss_pred H
Confidence 3
No 198
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.98 E-value=0.0015 Score=79.22 Aligned_cols=154 Identities=18% Similarity=0.145 Sum_probs=91.5
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCcc----------ccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEE
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPE----------LQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVS 330 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l~~~~~----------~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~ 330 (789)
.|++++++..+|+|||..-+...+.+.-+... .........|||||. .+..||.+++.+.+... +++.
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~ 450 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVL 450 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEE
Confidence 34678999999999998755444443211100 000123457999998 66679999999998754 5665
Q ss_pred EEECCCChHHH-HHHHhcCCcEEEeChHHHHHHHhhcc--------------cc----cC--ceeEEEEeccchhccCCC
Q 003881 331 AVYGGMSKLDQ-FKELKAGCEIVIATPGRLIDMLKMKA--------------LT----MS--RVTYLVLDEADRMFDLGF 389 (789)
Q Consensus 331 ~~~gg~~~~~~-~~~l~~~~dIiV~Tp~~L~~~l~~~~--------------~~----l~--~i~~lVvDEah~m~~~~f 389 (789)
.+.| ....-. .......+||||+||..|..-+.... .. |- .|=.|+||||+.+-. -
T Consensus 451 ~Y~G-irk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--s 527 (1394)
T KOG0298|consen 451 LYFG-IRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--S 527 (1394)
T ss_pred EEec-hhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--h
Confidence 5544 322111 01112359999999999977664321 11 11 123489999997544 2
Q ss_pred hHHHHHHHhhcCCCceEEEEeccCcHHHHHH
Q 003881 390 EPQIRSIVGQIRPDRQTLLFSATMPRKVEKL 420 (789)
Q Consensus 390 ~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l 420 (789)
..+....+.+++ ....-.+|.|+-..+..+
T Consensus 528 sS~~a~M~~rL~-~in~W~VTGTPiq~Iddl 557 (1394)
T KOG0298|consen 528 SSAAAEMVRRLH-AINRWCVTGTPIQKIDDL 557 (1394)
T ss_pred HHHHHHHHHHhh-hhceeeecCCchhhhhhh
Confidence 334444444443 334567899965545444
No 199
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.96 E-value=0.0028 Score=59.11 Aligned_cols=17 Identities=35% Similarity=0.393 Sum_probs=12.0
Q ss_pred CCCEEEEccCCChhhHH
Q 003881 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvll~a~TGsGKTla 278 (789)
++.+++.|++|+|||.+
T Consensus 4 ~~~~~i~G~~G~GKT~~ 20 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTL 20 (131)
T ss_dssp ---EEEEE-TTSSHHHH
T ss_pred CcccEEEcCCCCCHHHH
Confidence 45689999999999975
No 200
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.96 E-value=0.0068 Score=74.81 Aligned_cols=124 Identities=20% Similarity=0.161 Sum_probs=77.7
Q ss_pred CCCcHHHHHHHHHHHcCCC-EEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhh
Q 003881 246 EKPTSIQCQALPIILSGRD-IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~grd-vll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~ 324 (789)
..+++-|.+++..++.+++ +++.+..|+|||.+ +-.+..++. ..+..++.++||--.|..+.+ .
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~--l~~~~~~~e------~~G~~V~~~ApTGkAA~~L~e-------~ 409 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM--LGVAREAWE------AAGYEVRGAALSGIAAENLEG-------G 409 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH--HHHHHHHHH------HcCCeEEEecCcHHHHHHHhh-------c
Confidence 3699999999999998765 67889999999975 333333332 236779999999766644321 1
Q ss_pred cCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhc-CCC
Q 003881 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPD 403 (789)
Q Consensus 325 ~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l-~~~ 403 (789)
.++.. .|..+|+.-.......+...++||||||-++.. .++..++... +..
T Consensus 410 tGi~a------------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~----~~m~~LL~~a~~~g 461 (988)
T PRK13889 410 SGIAS------------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGT----RQLERVLSHAADAG 461 (988)
T ss_pred cCcch------------------------hhHHHHHhhhcccccccccCcEEEEECcccCCH----HHHHHHHHhhhhCC
Confidence 12211 122222211122233466778999999996543 3445555543 456
Q ss_pred ceEEEEecc
Q 003881 404 RQTLLFSAT 412 (789)
Q Consensus 404 ~q~ll~SAT 412 (789)
.++|++.=+
T Consensus 462 arvVLVGD~ 470 (988)
T PRK13889 462 AKVVLVGDP 470 (988)
T ss_pred CEEEEECCH
Confidence 778887666
No 201
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.92 E-value=0.0085 Score=66.64 Aligned_cols=74 Identities=18% Similarity=0.208 Sum_probs=47.1
Q ss_pred CCCCcHHHHHHHHHHH----cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHH
Q 003881 245 YEKPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK 320 (789)
Q Consensus 245 ~~~ptpiQ~~~i~~il----~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~ 320 (789)
|....|-|.+-+-.+. .+-++|+.+|+|+|||++.+-.++.+.+..|. .-.+.+++.-|..-......+++.
T Consensus 14 Y~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~----~~~KliYCSRTvpEieK~l~El~~ 89 (755)
T KOG1131|consen 14 YDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPD----EHRKLIYCSRTVPEIEKALEELKR 89 (755)
T ss_pred CcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCc----ccceEEEecCcchHHHHHHHHHHH
Confidence 4455666766554443 44689999999999999866666666655542 223456666665555555556655
Q ss_pred Hh
Q 003881 321 FA 322 (789)
Q Consensus 321 ~~ 322 (789)
+.
T Consensus 90 l~ 91 (755)
T KOG1131|consen 90 LM 91 (755)
T ss_pred HH
Confidence 54
No 202
>PRK04296 thymidine kinase; Provisional
Probab=96.84 E-value=0.0024 Score=64.29 Aligned_cols=109 Identities=13% Similarity=0.179 Sum_probs=58.8
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCc---HHHHHHHHHHHHHHhhhcCCeEEEEECCCChH
Q 003881 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT---RELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (789)
Q Consensus 263 rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~Pt---reLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~ 339 (789)
.-.++.+++|+|||...+ -++..+. ..+.+++|+-|. +....+ ++...++....
T Consensus 3 ~i~litG~~GsGKTT~~l-~~~~~~~-------~~g~~v~i~k~~~d~~~~~~~-------i~~~lg~~~~~-------- 59 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELL-QRAYNYE-------ERGMKVLVFKPAIDDRYGEGK-------VVSRIGLSREA-------- 59 (190)
T ss_pred EEEEEECCCCCHHHHHHH-HHHHHHH-------HcCCeEEEEeccccccccCCc-------EecCCCCcccc--------
Confidence 346889999999997633 3333332 235668888663 222111 11111221110
Q ss_pred HHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEecc
Q 003881 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT 412 (789)
Q Consensus 340 ~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT 412 (789)
+.+..+..++..+.. .-..+++|||||+|.+- ..++..++..+.+.-..+++++-
T Consensus 60 -----------~~~~~~~~~~~~~~~---~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 60 -----------IPVSSDTDIFELIEE---EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred -----------eEeCChHHHHHHHHh---hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEec
Confidence 123444455555443 23467899999998632 34566677765544445555554
No 203
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.84 E-value=0.086 Score=70.34 Aligned_cols=236 Identities=15% Similarity=0.182 Sum_probs=127.9
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhh
Q 003881 247 KPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (789)
Q Consensus 247 ~ptpiQ~~~i~~il~g--rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~ 324 (789)
.+++-|.+++..++.. +-+++.+..|+|||.+ +-.+..++. ..|..+++++||-.-+..+.+.....+
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~--l~~l~~~~~------~~G~~V~~lAPTgrAA~~L~e~~g~~A-- 498 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI--AQLLLHLAS------EQGYEIQIITAGSLSAQELRQKIPRLA-- 498 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH--HHHHHHHHH------hcCCeEEEEeCCHHHHHHHHHHhcchh--
Confidence 5889999999999876 4578889999999964 334444433 246779999999887766554432111
Q ss_pred cCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhc-CCC
Q 003881 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPD 403 (789)
Q Consensus 325 ~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l-~~~ 403 (789)
. .....+..+.. ..-..|...|+ .....+...++||||||-++. ...+..++... +..
T Consensus 499 -----~------Ti~~~l~~l~~--~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~~g 557 (1960)
T TIGR02760 499 -----S------TFITWVKNLFN--DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQHN 557 (1960)
T ss_pred -----h------hHHHHHHhhcc--cccchhHHHhh----cccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhhcC
Confidence 0 00111111111 11122333333 223345678899999999653 34566677655 467
Q ss_pred ceEEEEecc--CcH----HHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHHHHHhcCCCCC-CCCEEEE
Q 003881 404 RQTLLFSAT--MPR----KVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMID-DGDVLVF 476 (789)
Q Consensus 404 ~q~ll~SAT--~~~----~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~-~~kvLVF 476 (789)
.++|++.-+ ++. .+..++.... -+ .+...........+ . .....+..+...+.+.+..+.. ...++|+
T Consensus 558 arvVlvGD~~QL~sV~aG~~f~~L~~~g-v~-t~~l~~i~rq~~~v--~-i~~~~~~~r~~~ia~~y~~L~~~r~~tliv 632 (1960)
T TIGR02760 558 SKLILLNDSAQRQGMSAGSAIDLLKEGG-VT-TYAWVDTKQQKASV--E-ISEAVDKLRVDYIASAWLDLTPDRQNSQVL 632 (1960)
T ss_pred CEEEEEcChhhcCccccchHHHHHHHCC-Cc-EEEeecccccCcce--e-eeccCchHHHHHHHHHHHhcccccCceEEE
Confidence 889988776 322 2222322211 11 11111111111112 1 1112233444455554444333 3368999
Q ss_pred ecccccHHHHHHHHHH----cC------Cceeecc-CCCCHHHHHHHHHHhhcC
Q 003881 477 ASKKTTVDEIESQLAQ----KG------FKAAALH-GDKDQASRMEILQKFKSG 519 (789)
Q Consensus 477 ~~s~~~a~~l~~~L~~----~g------~~v~~lh-g~~~~~eR~~~l~~F~~G 519 (789)
..+..+...|....+. .| +.+..|. -.|+..++... ..|+.|
T Consensus 633 ~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~G 685 (1960)
T TIGR02760 633 ATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQG 685 (1960)
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCC
Confidence 9998887777666543 22 2333333 35777777644 556554
No 204
>PRK14974 cell division protein FtsY; Provisional
Probab=96.76 E-value=0.014 Score=63.74 Aligned_cols=132 Identities=23% Similarity=0.292 Sum_probs=75.1
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcC-c-H-HHHHHHHHHHHHHhhhcCCeEEEEECCCChH
Q 003881 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP-T-R-ELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (789)
Q Consensus 263 rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~P-t-r-eLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~ 339 (789)
.-+++++++|+|||.+ +..+.+.+.. .+.+++++.. | | ....|+ +.++...++.+.....+....
T Consensus 141 ~vi~~~G~~GvGKTTt--iakLA~~l~~------~g~~V~li~~Dt~R~~a~eqL----~~~a~~lgv~v~~~~~g~dp~ 208 (336)
T PRK14974 141 VVIVFVGVNGTGKTTT--IAKLAYYLKK------NGFSVVIAAGDTFRAGAIEQL----EEHAERLGVKVIKHKYGADPA 208 (336)
T ss_pred eEEEEEcCCCCCHHHH--HHHHHHHHHH------cCCeEEEecCCcCcHHHHHHH----HHHHHHcCCceecccCCCCHH
Confidence 3577899999999975 2233333322 2344555543 2 2 333444 344444466544322222111
Q ss_pred HHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhc-cCCChHHHHHHHhhcCCCceEEEEeccCcHHHH
Q 003881 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF-DLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVE 418 (789)
Q Consensus 340 ~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~-~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~ 418 (789)
.. +.+.+... ....+++||||.+.++. +......+..+...+.++..++.++||......
T Consensus 209 ~v-----------------~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~ 269 (336)
T PRK14974 209 AV-----------------AYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAV 269 (336)
T ss_pred HH-----------------HHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHH
Confidence 10 11222211 12356799999999875 334556677777777888889999999877766
Q ss_pred HHHHHHh
Q 003881 419 KLAREIL 425 (789)
Q Consensus 419 ~l~~~~l 425 (789)
..+..|.
T Consensus 270 ~~a~~f~ 276 (336)
T PRK14974 270 EQAREFN 276 (336)
T ss_pred HHHHHHH
Confidence 6666664
No 205
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.62 E-value=0.0036 Score=69.70 Aligned_cols=60 Identities=22% Similarity=0.320 Sum_probs=45.3
Q ss_pred CCcHHHHHHHHHH------HcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHH
Q 003881 247 KPTSIQCQALPII------LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI 314 (789)
Q Consensus 247 ~ptpiQ~~~i~~i------l~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi 314 (789)
+|++-|+.++..+ ..+..+++.++-|+|||. ++-.+.+.+.. .+..+++++||-..|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~--l~~~i~~~~~~------~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSF--LIKAIIDYLRS------RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhH--HHHHHHHHhcc------ccceEEEecchHHHHHhc
Confidence 3677899998888 577889999999999995 45555544432 356799999997777654
No 206
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.62 E-value=0.015 Score=62.61 Aligned_cols=143 Identities=15% Similarity=0.225 Sum_probs=85.2
Q ss_pred CCCCCcHHHHHHHHHHHcC--CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHH------
Q 003881 244 GYEKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIY------ 315 (789)
Q Consensus 244 g~~~ptpiQ~~~i~~il~g--rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~------ 315 (789)
|+......|.-|+..++.- .=|.+.++.|+|||+.++.+.|...+..+.. .++||.=|+..+-..|-
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y-----~KiiVtRp~vpvG~dIGfLPG~e 299 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRY-----RKIIVTRPTVPVGEDIGFLPGTE 299 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhh-----ceEEEecCCcCcccccCcCCCch
Confidence 5555667788888888865 3477789999999999999999888776433 34677667655443220
Q ss_pred -HHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCc----------eeEEEEeccchh
Q 003881 316 -LETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSR----------VTYLVLDEADRM 384 (789)
Q Consensus 316 -~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~----------i~~lVvDEah~m 384 (789)
+.+..|+.. ..+....+.. .-=|+.+.|..++.+..+.+.. =.|||||||+.+
T Consensus 300 EeKm~PWmq~-------------i~DnLE~L~~---~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNL 363 (436)
T COG1875 300 EEKMGPWMQA-------------IFDNLEVLFS---PNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNL 363 (436)
T ss_pred hhhccchHHH-------------HHhHHHHHhc---ccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhcc
Confidence 111111110 0111111111 1112344454454443332211 257999999975
Q ss_pred ccCCChHHHHHHHhhcCCCceEEEEec
Q 003881 385 FDLGFEPQIRSIVGQIRPDRQTLLFSA 411 (789)
Q Consensus 385 ~~~~f~~~i~~il~~l~~~~q~ll~SA 411 (789)
- ..++..|+.++....+++++.-
T Consensus 364 T----pheikTiltR~G~GsKIVl~gd 386 (436)
T COG1875 364 T----PHELKTILTRAGEGSKIVLTGD 386 (436)
T ss_pred C----HHHHHHHHHhccCCCEEEEcCC
Confidence 3 4578899999988888877643
No 207
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.60 E-value=0.0055 Score=66.17 Aligned_cols=123 Identities=15% Similarity=0.084 Sum_probs=75.2
Q ss_pred CcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCC
Q 003881 248 PTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGI 327 (789)
Q Consensus 248 ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i 327 (789)
+|+-|.+++.+ ...+++|.|..|||||.+.+ .-+.+++..... ....+|+|++|+..|..+.+.+...+.....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~-~ri~~ll~~~~~---~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~ 74 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLL-ERIAYLLYEGGV---PPERILVLTFTNAAAQEMRERIRELLEEEQQ 74 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHH-HHHHHHHHTSSS---TGGGEEEEESSHHHHHHHHHHHHHHHHHCCH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHH-HHHHHhhccccC---ChHHheecccCHHHHHHHHHHHHHhcCcccc
Confidence 57889999888 66789999999999998744 444454443321 2345899999999999999999887654321
Q ss_pred eEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccC--ceeEEEEeccc
Q 003881 328 RVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMS--RVTYLVLDEAD 382 (789)
Q Consensus 328 ~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~--~i~~lVvDEah 382 (789)
.. ............-..+.|+|...+...+-+...... .-.+-|+|+..
T Consensus 75 ~~------~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 75 ES------SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp CC------TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cc------cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 10 000011122233467899998887664433222211 22456777776
No 208
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.59 E-value=0.012 Score=56.19 Aligned_cols=67 Identities=16% Similarity=0.283 Sum_probs=47.2
Q ss_pred HHHHHHHHHHcCC------ceeeccCCCCHHHHHHHHHHhhcCC-cceEEeehhhhccCCCCC--ccEEEEEcCCC
Q 003881 483 VDEIESQLAQKGF------KAAALHGDKDQASRMEILQKFKSGV-YHVLIATDVAARGLDIKS--IKSVVNFDIAR 549 (789)
Q Consensus 483 a~~l~~~L~~~g~------~v~~lhg~~~~~eR~~~l~~F~~G~-~~VLVaT~v~~rGlDI~~--v~~VI~~d~p~ 549 (789)
.+.+...+...+. ...++....+..+...+++.|+... ..||++|..+.+|+|+++ ++.||...+|.
T Consensus 4 m~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 4 MESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred HHHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 4455555555443 2344445566667889999998754 379999988999999998 67888877664
No 209
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.58 E-value=0.087 Score=64.29 Aligned_cols=72 Identities=18% Similarity=0.167 Sum_probs=54.1
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhh
Q 003881 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~ 323 (789)
..|+|-|.+++.. ....++|.|..|||||.+ ++.-+.+++...... ..++|+|+-|+..|..+.+.+.+++.
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~-l~~ria~Li~~~~i~---P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRV-LTHRIAHLIAEKNVA---PWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHH-HHHHHHHHHHcCCCC---HHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 4588999999864 346899999999999987 555566666532211 23589999999999999888887754
No 210
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.54 E-value=0.036 Score=69.07 Aligned_cols=137 Identities=18% Similarity=0.120 Sum_probs=82.9
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHHc-CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHH
Q 003881 232 FSTQLMHAISKQGYEKPTSIQCQALPIILS-GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTREL 310 (789)
Q Consensus 232 l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~-grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreL 310 (789)
+++..+......+ ..+++-|.+++..+.. .+-+++.+..|+|||.+ +-+ +..++. ..+..++.++||---
T Consensus 367 v~~~~l~a~~~~~-~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~-~~~~~e------~~G~~V~g~ApTgkA 437 (1102)
T PRK13826 367 VREAVLAATFARH-ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKA-AREAWE------AAGYRVVGGALAGKA 437 (1102)
T ss_pred CCHHHHHHHHhcC-CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHH-HHHHHH------HcCCeEEEEcCcHHH
Confidence 3444444433332 4799999999998865 45578899999999965 333 333332 246778999999776
Q ss_pred HHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCCh
Q 003881 311 AHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFE 390 (789)
Q Consensus 311 a~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~ 390 (789)
|..+.+ . .++... |-.+|+.........+..-++||||||-++. .
T Consensus 438 A~~L~e----~---~Gi~a~------------------------TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~----~ 482 (1102)
T PRK13826 438 AEGLEK----E---AGIQSR------------------------TLSSWELRWNQGRDQLDNKTVFVLDEAGMVA----S 482 (1102)
T ss_pred HHHHHH----h---hCCCee------------------------eHHHHHhhhccCccCCCCCcEEEEECcccCC----H
Confidence 654422 1 244322 1122211111122346667899999999643 3
Q ss_pred HHHHHHHhhcC-CCceEEEEecc
Q 003881 391 PQIRSIVGQIR-PDRQTLLFSAT 412 (789)
Q Consensus 391 ~~i~~il~~l~-~~~q~ll~SAT 412 (789)
.++..++..+. ...++|++.=+
T Consensus 483 ~~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 483 RQMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHHHHHHhcCCEEEEECCH
Confidence 35556666654 56778887666
No 211
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.51 E-value=0.003 Score=71.32 Aligned_cols=142 Identities=19% Similarity=0.195 Sum_probs=71.6
Q ss_pred EEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHH-HhhhcCCeEEEEECCCChH----HH
Q 003881 267 GIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK-FAKSHGIRVSAVYGGMSKL----DQ 341 (789)
Q Consensus 267 l~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~-~~~~~~i~v~~~~gg~~~~----~~ 341 (789)
..+.||||||+++. .++.+++.+. -..-|+.|....+......-+.. ....+=+.-...+++.... ..
T Consensus 2 f~matgsgkt~~ma-~lil~~y~kg------yr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~ 74 (812)
T COG3421 2 FEMATGSGKTLVMA-GLILECYKKG------YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNN 74 (812)
T ss_pred cccccCCChhhHHH-HHHHHHHHhc------hhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecc
Confidence 45789999999744 4445555542 12246666554444433222211 1110001111112221110 11
Q ss_pred HHHHhcCCcEEEeChHHHHHHHhhc---cc---ccCceeE-EEEeccchhcc-------------CCChHHHHHHHhhcC
Q 003881 342 FKELKAGCEIVIATPGRLIDMLKMK---AL---TMSRVTY-LVLDEADRMFD-------------LGFEPQIRSIVGQIR 401 (789)
Q Consensus 342 ~~~l~~~~dIiV~Tp~~L~~~l~~~---~~---~l~~i~~-lVvDEah~m~~-------------~~f~~~i~~il~~l~ 401 (789)
..+...+..|+++|.+.|...+.+. .+ .|....+ ++-||||++-. ..|+..+...++. .
T Consensus 75 fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~-n 153 (812)
T COG3421 75 FSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQ-N 153 (812)
T ss_pred cCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhc-C
Confidence 1122345789999999998776542 22 2334443 56799999743 1233333333332 3
Q ss_pred CCceEEEEeccCcHH
Q 003881 402 PDRQTLLFSATMPRK 416 (789)
Q Consensus 402 ~~~q~ll~SAT~~~~ 416 (789)
++--++.+|||+|.+
T Consensus 154 kd~~~lef~at~~k~ 168 (812)
T COG3421 154 KDNLLLEFSATIPKE 168 (812)
T ss_pred CCceeehhhhcCCcc
Confidence 455678899999843
No 212
>PRK06526 transposase; Provisional
Probab=96.49 E-value=0.011 Score=62.44 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=20.0
Q ss_pred HHHHHHcCCCEEEEccCCChhhHH
Q 003881 255 ALPIILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 255 ~i~~il~grdvll~a~TGsGKTla 278 (789)
+..++..++++++++|+|+|||..
T Consensus 91 ~~~fi~~~~nlll~Gp~GtGKThL 114 (254)
T PRK06526 91 TLDFVTGKENVVFLGPPGTGKTHL 114 (254)
T ss_pred cCchhhcCceEEEEeCCCCchHHH
Confidence 345666788999999999999965
No 213
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.48 E-value=0.031 Score=52.24 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=15.1
Q ss_pred CCCEEEEccCCChhhHH
Q 003881 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvll~a~TGsGKTla 278 (789)
++.+++.+++|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 67899999999999964
No 214
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.46 E-value=0.015 Score=64.40 Aligned_cols=133 Identities=20% Similarity=0.157 Sum_probs=66.6
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHH
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~ 340 (789)
.+..+++++|||+|||......+...+... ...++.++. +...-.--.+.++.|+...++.+..+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~------G~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~~~~------- 201 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRF------GASKVALLT-TDSYRIGGHEQLRIFGKILGVPVHAVK------- 201 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc------CCCeEEEEe-cccccccHHHHHHHHHHHcCCceEecC-------
Confidence 467899999999999986333222222221 112333332 222211123445666655565443322
Q ss_pred HHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCC-ChHHHHHHHhhcCCCceEEEEeccCcHH-HH
Q 003881 341 QFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG-FEPQIRSIVGQIRPDRQTLLFSATMPRK-VE 418 (789)
Q Consensus 341 ~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~-f~~~i~~il~~l~~~~q~ll~SAT~~~~-i~ 418 (789)
++..+...+. .+.+.++|+||.+=+..... ...++..+.....+...++.+|||.... +.
T Consensus 202 --------------~~~~l~~~l~----~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ 263 (374)
T PRK14722 202 --------------DGGDLQLALA----ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLN 263 (374)
T ss_pred --------------CcccHHHHHH----HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHH
Confidence 3323322222 34566889999997532111 1222222222223345578899997544 45
Q ss_pred HHHHHHh
Q 003881 419 KLAREIL 425 (789)
Q Consensus 419 ~l~~~~l 425 (789)
+.+..|.
T Consensus 264 evi~~f~ 270 (374)
T PRK14722 264 EVVQAYR 270 (374)
T ss_pred HHHHHHH
Confidence 5556554
No 215
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.37 E-value=0.033 Score=62.17 Aligned_cols=132 Identities=17% Similarity=0.159 Sum_probs=71.5
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCc-HHHHHHHHHHHHHHhhhcCCeEEEEECCCChHH
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT-RELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~Pt-reLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~ 340 (789)
.+.++++++||+|||.+..-. ..++... .. ......+||-+-| |.-+.. .++.++...++.+.+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKL-A~~~~~~-~~-~~g~~V~lit~Dt~R~aa~e---QL~~~a~~lgvpv~~--------- 238 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKL-AAIYGIN-SD-DKSLNIKIITIDNYRIGAKK---QIQTYGDIMGIPVKA--------- 238 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHH-HHHHHhh-hc-cCCCeEEEEeccCccHHHHH---HHHHHhhcCCcceEe---------
Confidence 356889999999999863322 2222111 00 0122334454444 333332 256666555554422
Q ss_pred HHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCC-ChHHHHHHHhhcCCC-ceEEEEeccCc-HHH
Q 003881 341 QFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG-FEPQIRSIVGQIRPD-RQTLLFSATMP-RKV 417 (789)
Q Consensus 341 ~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~-f~~~i~~il~~l~~~-~q~ll~SAT~~-~~i 417 (789)
+-++..+...+. .+..+++||||++.++.... ....+..++..+.+. ..++.+|||.. ..+
T Consensus 239 ------------~~~~~~l~~~L~----~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~ 302 (388)
T PRK12723 239 ------------IESFKDLKEEIT----QSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDV 302 (388)
T ss_pred ------------eCcHHHHHHHHH----HhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHH
Confidence 123444444443 24578999999999865311 123445555555443 46788999975 445
Q ss_pred HHHHHHH
Q 003881 418 EKLAREI 424 (789)
Q Consensus 418 ~~l~~~~ 424 (789)
.+.+..|
T Consensus 303 ~~~~~~~ 309 (388)
T PRK12723 303 KEIFHQF 309 (388)
T ss_pred HHHHHHh
Confidence 5555555
No 216
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.31 E-value=0.0081 Score=62.63 Aligned_cols=86 Identities=24% Similarity=0.373 Sum_probs=65.8
Q ss_pred cCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECC-CChHHHHHHHhc-CCcEEEeChHHHHHHHhhcccccCce
Q 003881 296 EEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGG-MSKLDQFKELKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (789)
Q Consensus 296 ~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg-~~~~~~~~~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i 373 (789)
...|.+|||+..-.=|..+.+.++.|.. .+..|+-++.- ....+++..+.. .++|.||||+||..+++...+.+..+
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 4579999999987777777777777631 12333334433 245677777764 68999999999999999999999999
Q ss_pred eEEEEeccc
Q 003881 374 TYLVLDEAD 382 (789)
Q Consensus 374 ~~lVvDEah 382 (789)
.+||||--|
T Consensus 203 ~~ivlD~s~ 211 (252)
T PF14617_consen 203 KRIVLDWSY 211 (252)
T ss_pred eEEEEcCCc
Confidence 999999876
No 217
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.30 E-value=0.016 Score=55.41 Aligned_cols=67 Identities=18% Similarity=0.348 Sum_probs=44.8
Q ss_pred HHHHHHHHHHcCC---ceeeccCCCCHHHHHHHHHHhhcCCc---ceEEeehh--hhccCCCCC--ccEEEEEcCCC
Q 003881 483 VDEIESQLAQKGF---KAAALHGDKDQASRMEILQKFKSGVY---HVLIATDV--AARGLDIKS--IKSVVNFDIAR 549 (789)
Q Consensus 483 a~~l~~~L~~~g~---~v~~lhg~~~~~eR~~~l~~F~~G~~---~VLVaT~v--~~rGlDI~~--v~~VI~~d~p~ 549 (789)
.+.+.+.+.+.+. ...++.......+...+++.|++... .||+++.- +.+|||+++ ++.||...+|.
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 4556666655433 22233333334455788889987543 69998876 899999998 67899887764
No 218
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.26 E-value=0.37 Score=54.02 Aligned_cols=71 Identities=14% Similarity=0.305 Sum_probs=54.5
Q ss_pred CCCE-EEEecccccHHHHHHHHHH----cCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeeh--hhh----ccCCCCC
Q 003881 470 DGDV-LVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD--VAA----RGLDIKS 538 (789)
Q Consensus 470 ~~kv-LVF~~s~~~a~~l~~~L~~----~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~--v~~----rGlDI~~ 538 (789)
++++ ||.|++++.|..+....++ .++.++++||+.+..++...|+ . ..-|+|||. ++. .++|+..
T Consensus 295 ~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk---~-g~EivVaTPgRlid~VkmKatn~~r 370 (731)
T KOG0339|consen 295 EGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK---E-GAEIVVATPGRLIDMVKMKATNLSR 370 (731)
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh---c-CCeEEEechHHHHHHHHhhccccee
Confidence 4565 7788999998888776655 4889999999999888776665 3 467999993 222 6889999
Q ss_pred ccEEEE
Q 003881 539 IKSVVN 544 (789)
Q Consensus 539 v~~VI~ 544 (789)
+.++|+
T Consensus 371 vS~LV~ 376 (731)
T KOG0339|consen 371 VSYLVL 376 (731)
T ss_pred eeEEEE
Confidence 888774
No 219
>PRK06921 hypothetical protein; Provisional
Probab=96.08 E-value=0.067 Score=56.81 Aligned_cols=45 Identities=22% Similarity=0.211 Sum_probs=26.9
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHH
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQ 313 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Q 313 (789)
.+..+++.+++|+|||.. +.++...+... .+..++++ +..++..+
T Consensus 116 ~~~~l~l~G~~G~GKThL-a~aia~~l~~~------~g~~v~y~-~~~~l~~~ 160 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHL-LTAAANELMRK------KGVPVLYF-PFVEGFGD 160 (266)
T ss_pred CCCeEEEECCCCCcHHHH-HHHHHHHHhhh------cCceEEEE-EHHHHHHH
Confidence 357799999999999964 33344444321 14445554 44455444
No 220
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.01 E-value=0.014 Score=54.06 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=25.2
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHH
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa 311 (789)
+..+++++++|+|||.. +..++..+ .. ....++++.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl-~~~l~~~~-~~------~~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTL-ARALAREL-GP------PGGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHH-HHHHHhcc-CC------CCCCEEEECCEEccc
Confidence 46789999999999975 22222222 21 112467777765443
No 221
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.94 E-value=0.098 Score=57.80 Aligned_cols=135 Identities=18% Similarity=0.277 Sum_probs=78.9
Q ss_pred HcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChH
Q 003881 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (789)
Q Consensus 260 l~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~ 339 (789)
.+++-+.+++|||.|||.+ ++=|++.+. ...+....+||.+-|--.+. ++.++.++..+++.+.+
T Consensus 201 ~~~~vi~LVGPTGVGKTTT--lAKLAar~~---~~~~~~kVaiITtDtYRIGA--~EQLk~Ya~im~vp~~v-------- 265 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTT--LAKLAARYV---MLKKKKKVAIITTDTYRIGA--VEQLKTYADIMGVPLEV-------- 265 (407)
T ss_pred ccCcEEEEECCCCCcHHHH--HHHHHHHHH---hhccCcceEEEEeccchhhH--HHHHHHHHHHhCCceEE--------
Confidence 3478899999999999976 222333222 11233445677666644432 45677777766766543
Q ss_pred HHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhc-cCCChHHHHHHHhhcCCCceEEEEeccCc-HHH
Q 003881 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF-DLGFEPQIRSIVGQIRPDRQTLLFSATMP-RKV 417 (789)
Q Consensus 340 ~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~-~~~f~~~i~~il~~l~~~~q~ll~SAT~~-~~i 417 (789)
+-+|.-|...+. .+.++++|.||=+=+-. |.-...++..++....+.--.|.+|||.. ..+
T Consensus 266 -------------v~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dl 328 (407)
T COG1419 266 -------------VYSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDL 328 (407)
T ss_pred -------------ecCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHH
Confidence 445555555443 45566778888776421 21233445555555544556788999964 445
Q ss_pred HHHHHHHhC
Q 003881 418 EKLAREILS 426 (789)
Q Consensus 418 ~~l~~~~l~ 426 (789)
.+....|-.
T Consensus 329 kei~~~f~~ 337 (407)
T COG1419 329 KEIIKQFSL 337 (407)
T ss_pred HHHHHHhcc
Confidence 556666544
No 222
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.93 E-value=0.052 Score=54.88 Aligned_cols=131 Identities=20% Similarity=0.237 Sum_probs=71.4
Q ss_pred EEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCc-HHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHH
Q 003881 265 IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT-RELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK 343 (789)
Q Consensus 265 vll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~Pt-reLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~ 343 (789)
+++++|||+|||.+ +.-+..++..+ +...+||.+-| |.=| .++++.++...++.+....-.....+.
T Consensus 4 i~lvGptGvGKTTt-~aKLAa~~~~~------~~~v~lis~D~~R~ga---~eQL~~~a~~l~vp~~~~~~~~~~~~~-- 71 (196)
T PF00448_consen 4 IALVGPTGVGKTTT-IAKLAARLKLK------GKKVALISADTYRIGA---VEQLKTYAEILGVPFYVARTESDPAEI-- 71 (196)
T ss_dssp EEEEESTTSSHHHH-HHHHHHHHHHT------T--EEEEEESTSSTHH---HHHHHHHHHHHTEEEEESSTTSCHHHH--
T ss_pred EEEECCCCCchHhH-HHHHHHHHhhc------cccceeecCCCCCccH---HHHHHHHHHHhccccchhhcchhhHHH--
Confidence 67899999999986 33333333221 22334554443 3333 445677776667665443222211111
Q ss_pred HHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhcc-CCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHH
Q 003881 344 ELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAR 422 (789)
Q Consensus 344 ~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~-~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~ 422 (789)
+...++. ....++++|+||=+-+... ......+..++..+.+..-++.+|||........+.
T Consensus 72 ---------------~~~~l~~--~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~ 134 (196)
T PF00448_consen 72 ---------------AREALEK--FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQAL 134 (196)
T ss_dssp ---------------HHHHHHH--HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHH
T ss_pred ---------------HHHHHHH--HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHH
Confidence 1122221 1234577899999875332 223456667777777777889999998766544444
Q ss_pred HH
Q 003881 423 EI 424 (789)
Q Consensus 423 ~~ 424 (789)
.+
T Consensus 135 ~~ 136 (196)
T PF00448_consen 135 AF 136 (196)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 223
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.89 E-value=0.18 Score=57.30 Aligned_cols=130 Identities=22% Similarity=0.248 Sum_probs=67.7
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeE-EEEcCc-HHHHHHHHHHHHHHhhhcCCeEEEEECCCChH
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIG-VICAPT-RELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~v-LIl~Pt-reLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~ 339 (789)
++.+++++|||+|||...+- +..++... ..+.++ ||-+-+ |.-+ .+.++.++...++.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~k-LA~~~~~~-----~~g~~V~li~~D~~r~~a---~eqL~~~a~~~~vp~~--------- 282 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAK-LAARYALL-----YGKKKVALITLDTYRIGA---VEQLKTYAKIMGIPVE--------- 282 (424)
T ss_pred CcEEEEECCCCCCHHHHHHH-HHHHHHHh-----cCCCeEEEEECCccHHHH---HHHHHHHHHHhCCceE---------
Confidence 56788999999999976332 22222100 112333 444433 3222 2345555544444332
Q ss_pred HHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhcc-CCChHHHHHHHh-hcCCCceEEEEeccCcH-H
Q 003881 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD-LGFEPQIRSIVG-QIRPDRQTLLFSATMPR-K 416 (789)
Q Consensus 340 ~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~-~~f~~~i~~il~-~l~~~~q~ll~SAT~~~-~ 416 (789)
++.++..+...+. .+..+++||||-+-+... ......+..++. ...+....++++||... .
T Consensus 283 ------------~~~~~~~l~~~l~----~~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~ 346 (424)
T PRK05703 283 ------------VVYDPKELAKALE----QLRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYED 346 (424)
T ss_pred ------------ccCCHHhHHHHHH----HhCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHH
Confidence 2234444444443 234678999999865321 112234445555 22344567889998754 5
Q ss_pred HHHHHHHHh
Q 003881 417 VEKLAREIL 425 (789)
Q Consensus 417 i~~l~~~~l 425 (789)
+..++..|-
T Consensus 347 l~~~~~~f~ 355 (424)
T PRK05703 347 LKDIYKHFS 355 (424)
T ss_pred HHHHHHHhC
Confidence 555555553
No 224
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.88 E-value=0.019 Score=66.37 Aligned_cols=150 Identities=19% Similarity=0.183 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHc-----C----CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHH
Q 003881 250 SIQCQALPIILS-----G----RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK 320 (789)
Q Consensus 250 piQ~~~i~~il~-----g----rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~ 320 (789)
|+|+-.+-.++- + +.+++.-+=+-|||......++.+++-. ...++.++++++++.-|..++..+..
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~----g~~~~~i~~~A~~~~QA~~~f~~~~~ 76 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD----GEPGAEIYCAANTRDQAKIVFDEAKK 76 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC----CccCceEEEEeCCHHHHHHHHHHHHH
Confidence 678887777772 2 3578888999999976555555555433 23467899999999999999999998
Q ss_pred HhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhc--ccccCceeEEEEeccchhccCCChHHHHHHHh
Q 003881 321 FAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK--ALTMSRVTYLVLDEADRMFDLGFEPQIRSIVG 398 (789)
Q Consensus 321 ~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~--~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~ 398 (789)
+........... . ...... ....|..-..+.++..+... ...=.+.+++|+||+|.+.+......+..-..
T Consensus 77 ~i~~~~~l~~~~-~-----~~~~~~-~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~ 149 (477)
T PF03354_consen 77 MIEASPELRKRK-K-----PKIIKS-NKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMG 149 (477)
T ss_pred HHHhChhhccch-h-----hhhhhh-hceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhc
Confidence 876422111000 0 000000 01223322222222222221 11222578999999999766433444444444
Q ss_pred hcCCCceEEEEec
Q 003881 399 QIRPDRQTLLFSA 411 (789)
Q Consensus 399 ~l~~~~q~ll~SA 411 (789)
. +++.+++++|.
T Consensus 150 ~-r~~pl~~~IST 161 (477)
T PF03354_consen 150 A-RPNPLIIIIST 161 (477)
T ss_pred c-CCCceEEEEeC
Confidence 3 34666665543
No 225
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.85 E-value=0.1 Score=54.54 Aligned_cols=48 Identities=25% Similarity=0.339 Sum_probs=29.1
Q ss_pred cCceeEEEEeccchhccCCChHH-HHHHHhh-cCCCceEEEEeccCcHHH
Q 003881 370 MSRVTYLVLDEADRMFDLGFEPQ-IRSIVGQ-IRPDRQTLLFSATMPRKV 417 (789)
Q Consensus 370 l~~i~~lVvDEah~m~~~~f~~~-i~~il~~-l~~~~q~ll~SAT~~~~i 417 (789)
+..+++|||||++......|... +..|+.. ......+++.|---+..+
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l 209 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEM 209 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHH
Confidence 44788999999997665444443 3345543 233456666666555443
No 226
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.81 E-value=0.13 Score=56.94 Aligned_cols=129 Identities=22% Similarity=0.330 Sum_probs=69.7
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeE-EEEc-CcH-HHHHHHHHHHHHHhhhcCCeEEEEECCCChH
Q 003881 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIG-VICA-PTR-ELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (789)
Q Consensus 263 rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~v-LIl~-Ptr-eLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~ 339 (789)
+.++++++||+|||..... +...+.. .+.++ +|-+ |.| ..+.| ++.++...++.+.
T Consensus 242 ~vI~LVGptGvGKTTTiaK-LA~~L~~-------~GkkVglI~aDt~RiaAvEQ----Lk~yae~lgipv~--------- 300 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAK-MAWQFHG-------KKKTVGFITTDHSRIGTVQQ----LQDYVKTIGFEVI--------- 300 (436)
T ss_pred cEEEEECCCCCcHHHHHHH-HHHHHHH-------cCCcEEEEecCCcchHHHHH----HHHHhhhcCCcEE---------
Confidence 5688999999999976332 2223322 23334 4444 333 22333 3344433333322
Q ss_pred HHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccC-CChHHHHHHHhhcCCCceEEEEeccCc-HHH
Q 003881 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMP-RKV 417 (789)
Q Consensus 340 ~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~-~f~~~i~~il~~l~~~~q~ll~SAT~~-~~i 417 (789)
++.+|..|.+.+..-. ...++++|+||-+=+.... .....+..++....+..-++.+|||.. +.+
T Consensus 301 ------------v~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~ 367 (436)
T PRK11889 301 ------------AVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDM 367 (436)
T ss_pred ------------ecCCHHHHHHHHHHHH-hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHH
Confidence 2345666666553211 1125788999998764422 123344455555556656677999754 566
Q ss_pred HHHHHHHh
Q 003881 418 EKLAREIL 425 (789)
Q Consensus 418 ~~l~~~~l 425 (789)
...+..|-
T Consensus 368 ~~i~~~F~ 375 (436)
T PRK11889 368 IEIITNFK 375 (436)
T ss_pred HHHHHHhc
Confidence 66776664
No 227
>PHA02533 17 large terminase protein; Provisional
Probab=95.79 E-value=0.049 Score=63.43 Aligned_cols=148 Identities=16% Similarity=0.070 Sum_probs=85.4
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003881 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (789)
Q Consensus 247 ~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~ 326 (789)
.|.|+|...+..+..+|-.++..+=..|||.+....++..++.. .+..+++++|++.-|..+.+.++.+.....
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~------~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P 132 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN------KDKNVGILAHKASMAAEVLDRTKQAIELLP 132 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC------CCCEEEEEeCCHHHHHHHHHHHHHHHHhCH
Confidence 58899999998876666667777778899987665455444432 255799999999999999888886654321
Q ss_pred --CeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcCC--
Q 003881 327 --IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP-- 402 (789)
Q Consensus 327 --i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~-- 402 (789)
++...... ......+.+++.|.+.|-. .....=..+.++||||+|.+.+ +...+..+...+..
T Consensus 133 ~l~~~~i~~~----~~~~I~l~NGS~I~~lss~-------~~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg~ 199 (534)
T PHA02533 133 DFLQPGIVEW----NKGSIELENGSKIGAYASS-------PDAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSGR 199 (534)
T ss_pred HHhhcceeec----CccEEEeCCCCEEEEEeCC-------CCccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcCC
Confidence 11100000 0011112455666554421 1111122467899999997644 23333333333332
Q ss_pred CceEEEEeccC
Q 003881 403 DRQTLLFSATM 413 (789)
Q Consensus 403 ~~q~ll~SAT~ 413 (789)
..+++++|++.
T Consensus 200 ~~r~iiiSTp~ 210 (534)
T PHA02533 200 SSKIIITSTPN 210 (534)
T ss_pred CceEEEEECCC
Confidence 23455666553
No 228
>PRK08116 hypothetical protein; Validated
Probab=95.64 E-value=0.18 Score=53.70 Aligned_cols=48 Identities=13% Similarity=0.227 Sum_probs=27.9
Q ss_pred cCceeEEEEeccch--hccCCChHHHHHHHhhc-CCCceEEEEeccCcHHHH
Q 003881 370 MSRVTYLVLDEADR--MFDLGFEPQIRSIVGQI-RPDRQTLLFSATMPRKVE 418 (789)
Q Consensus 370 l~~i~~lVvDEah~--m~~~~f~~~i~~il~~l-~~~~q~ll~SAT~~~~i~ 418 (789)
+..+++||||+++. ..+|. ...+..+++.. .....+|+.|-..|..+.
T Consensus 176 l~~~dlLviDDlg~e~~t~~~-~~~l~~iin~r~~~~~~~IiTsN~~~~eL~ 226 (268)
T PRK08116 176 LVNADLLILDDLGAERDTEWA-REKVYNIIDSRYRKGLPTIVTTNLSLEELK 226 (268)
T ss_pred hcCCCEEEEecccCCCCCHHH-HHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 34667899999963 33332 33455555543 344566766666655543
No 229
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.59 E-value=0.11 Score=49.75 Aligned_cols=44 Identities=18% Similarity=0.336 Sum_probs=25.3
Q ss_pred cCceeEEEEeccchhccCCC----------hHHHHHHHhhcCCCceEEEEeccC
Q 003881 370 MSRVTYLVLDEADRMFDLGF----------EPQIRSIVGQIRPDRQTLLFSATM 413 (789)
Q Consensus 370 l~~i~~lVvDEah~m~~~~f----------~~~i~~il~~l~~~~q~ll~SAT~ 413 (789)
.....+|||||++.+..... ...+..++..++....+++++...
T Consensus 83 ~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~ 136 (165)
T cd01120 83 RGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQV 136 (165)
T ss_pred CCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEec
Confidence 34678999999998754321 234445555554434444444443
No 230
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.55 E-value=0.052 Score=66.05 Aligned_cols=109 Identities=17% Similarity=0.174 Sum_probs=72.7
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003881 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~ 325 (789)
..|+|-|.+++.. ....++|.|..|||||.+ ++.-+.+++..... ....+|+|+-|+..|..+.+.+.++....
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~-L~~Ria~Li~~~~v---~p~~IL~lTFTnkAA~em~~Rl~~~~~~~ 76 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRV-LTHRIAWLLSVENA---SPHSIMAVTFTNKAAAEMRHRIGALLGTS 76 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHcCCC---CHHHeEeeeccHHHHHHHHHHHHHHhccc
Confidence 4689999999864 346899999999999987 66666777654221 23358999999999999988888875310
Q ss_pred CCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHH-Hhhcc--cccCceeEEEEeccch
Q 003881 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDM-LKMKA--LTMSRVTYLVLDEADR 383 (789)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~-l~~~~--~~l~~i~~lVvDEah~ 383 (789)
...+.|+|...|... ++... ..+. -.+-|+|+.+.
T Consensus 77 ----------------------~~~~~i~TfHs~~~~iLr~~~~~~g~~-~~f~i~d~~d~ 114 (715)
T TIGR01075 77 ----------------------ARGMWIGTFHGLAHRLLRAHHLDAGLP-QDFQILDSDDQ 114 (715)
T ss_pred ----------------------ccCcEEEcHHHHHHHHHHHHHHHhCCC-CCCeecCHHHH
Confidence 024677887776543 33221 1121 13457787764
No 231
>PRK05642 DNA replication initiation factor; Validated
Probab=95.51 E-value=0.044 Score=57.07 Aligned_cols=45 Identities=18% Similarity=0.334 Sum_probs=29.6
Q ss_pred CceeEEEEeccchhccC-CChHHHHHHHhhcCCCceEEEEeccCcH
Q 003881 371 SRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMPR 415 (789)
Q Consensus 371 ~~i~~lVvDEah~m~~~-~f~~~i~~il~~l~~~~q~ll~SAT~~~ 415 (789)
..+++||||++|.+... .+...+..+++.+......++++++.++
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 35578999999976533 3455677788776654445666666543
No 232
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.43 E-value=0.06 Score=65.54 Aligned_cols=71 Identities=17% Similarity=0.150 Sum_probs=54.5
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHh
Q 003881 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~ 322 (789)
..|+|-|.+++... ...++|.|..|||||.+ ++.-+.+++..... ....+|+|+-|+..|..+.+.+.++.
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~v-l~~Ria~Li~~~~v---~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRV-LVHRIAWLMQVENA---SPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHH-HHHHHHHHHHcCCC---ChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 45899999998643 45899999999999987 55666677653211 22358999999999999988888875
No 233
>PRK06893 DNA replication initiation factor; Validated
Probab=95.37 E-value=0.051 Score=56.38 Aligned_cols=46 Identities=20% Similarity=0.312 Sum_probs=30.4
Q ss_pred CceeEEEEeccchhcc-CCChHHHHHHHhhcCC-CceEEEEeccCcHH
Q 003881 371 SRVTYLVLDEADRMFD-LGFEPQIRSIVGQIRP-DRQTLLFSATMPRK 416 (789)
Q Consensus 371 ~~i~~lVvDEah~m~~-~~f~~~i~~il~~l~~-~~q~ll~SAT~~~~ 416 (789)
.++++|||||+|.+.. ..+...+..+++.+.. ..+++++|++.++.
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 4678899999998753 2344456666766654 34566788876543
No 234
>PRK08727 hypothetical protein; Validated
Probab=95.30 E-value=0.046 Score=56.88 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=26.6
Q ss_pred CceeEEEEeccchhccCC-ChHHHHHHHhhcCCC-ceEEEEeccCcHHH
Q 003881 371 SRVTYLVLDEADRMFDLG-FEPQIRSIVGQIRPD-RQTLLFSATMPRKV 417 (789)
Q Consensus 371 ~~i~~lVvDEah~m~~~~-f~~~i~~il~~l~~~-~q~ll~SAT~~~~i 417 (789)
.++++|||||+|.+.... ....+..+++.+... .++|+.|...|...
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 455789999999876432 233445555554333 34444444455443
No 235
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.18 E-value=0.27 Score=53.86 Aligned_cols=48 Identities=6% Similarity=0.183 Sum_probs=27.9
Q ss_pred cCceeEEEEeccchhccCCC-hHHHHHHHhhcC-CCceEEEEeccCcHHH
Q 003881 370 MSRVTYLVLDEADRMFDLGF-EPQIRSIVGQIR-PDRQTLLFSATMPRKV 417 (789)
Q Consensus 370 l~~i~~lVvDEah~m~~~~f-~~~i~~il~~l~-~~~q~ll~SAT~~~~i 417 (789)
+.++++||||+.+......| ...+..+++... ....+|+.|-..+..+
T Consensus 244 l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el 293 (329)
T PRK06835 244 LINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEEL 293 (329)
T ss_pred hccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHH
Confidence 45678999999986543322 334556665443 3445555555545444
No 236
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.16 E-value=0.061 Score=64.59 Aligned_cols=74 Identities=15% Similarity=0.137 Sum_probs=54.7
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhh
Q 003881 244 GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (789)
Q Consensus 244 g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~ 323 (789)
.-..+++-|++++-. ...++++.|..|||||.+ ++.-+.+++.... .....+|+|+.|+..|..+.+.+...+.
T Consensus 193 e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~v-l~~r~ayLl~~~~---~~~~~IL~ltft~~AA~em~eRL~~~lg 266 (684)
T PRK11054 193 ESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSV-LVARAGWLLARGQ---AQPEQILLLAFGRQAAEEMDERIRERLG 266 (684)
T ss_pred cCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHH-HHHHHHHHHHhCC---CCHHHeEEEeccHHHHHHHHHHHHHhcC
Confidence 335789999999853 345789999999999987 5555666654321 1234699999999999999888877653
No 237
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.12 E-value=0.46 Score=57.22 Aligned_cols=131 Identities=15% Similarity=0.189 Sum_probs=66.2
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeE-EEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHH
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIG-VICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~v-LIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~ 340 (789)
++-++++++||+|||.+....+..+.... .+.++ ||-+-|--.+ ..+.++.++...++.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~------G~kkV~lit~Dt~Rig--A~eQL~~~a~~~gvpv~---------- 246 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVARE------GADQLALLTTDSFRIG--ALEQLRIYGRILGVPVH---------- 246 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHc------CCCeEEEecCcccchH--HHHHHHHHHHhCCCCcc----------
Confidence 44578899999999976333222221111 11233 3333332211 13445555554454332
Q ss_pred HHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccC-CChHHHHHHHhhcCCCceEEEEeccCc-HHHH
Q 003881 341 QFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMP-RKVE 418 (789)
Q Consensus 341 ~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~-~f~~~i~~il~~l~~~~q~ll~SAT~~-~~i~ 418 (789)
++.+|..+.+.+. .+..+++|+||=+=+.... .....+..+.....+...++.++||.. ..+.
T Consensus 247 -----------~~~~~~~l~~al~----~~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~ 311 (767)
T PRK14723 247 -----------AVKDAADLRFALA----ALGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLN 311 (767)
T ss_pred -----------ccCCHHHHHHHHH----HhcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHH
Confidence 2235555555554 2345577888877764321 122233333334445666778888864 3445
Q ss_pred HHHHHHh
Q 003881 419 KLAREIL 425 (789)
Q Consensus 419 ~l~~~~l 425 (789)
+++..|.
T Consensus 312 ~i~~~f~ 318 (767)
T PRK14723 312 EVVHAYR 318 (767)
T ss_pred HHHHHHh
Confidence 5555553
No 238
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.11 E-value=0.07 Score=55.61 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=25.3
Q ss_pred eeEEEEeccchhccC-CChHHHHHHHhhcCC-CceEEEEeccCc
Q 003881 373 VTYLVLDEADRMFDL-GFEPQIRSIVGQIRP-DRQTLLFSATMP 414 (789)
Q Consensus 373 i~~lVvDEah~m~~~-~f~~~i~~il~~l~~-~~q~ll~SAT~~ 414 (789)
+++|||||+|.+... .+...+..+++.+.. ....+++|++.|
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~ 141 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRP 141 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCC
Confidence 468999999987532 345556666666543 222344555544
No 239
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.02 E-value=0.12 Score=62.49 Aligned_cols=108 Identities=18% Similarity=0.131 Sum_probs=70.7
Q ss_pred CcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCC
Q 003881 248 PTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGI 327 (789)
Q Consensus 248 ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i 327 (789)
|+|-|.+++.. ...++++.|..|||||.+ ++.-+.+++..... ....+|+|+.|+..|.++.+.+.+.+...
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~-L~~ri~~ll~~~~~---~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~-- 73 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRV-ITNKIAYLIQNCGY---KARNIAAVTFTNKAAREMKERVAKTLGKG-- 73 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHhcCC---CHHHeEEEeccHHHHHHHHHHHHHHhCcc--
Confidence 67889998764 356899999999999986 55556666643211 23458999999999999988887765310
Q ss_pred eEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcc---cccCceeEEEEeccch
Q 003881 328 RVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKA---LTMSRVTYLVLDEADR 383 (789)
Q Consensus 328 ~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~---~~l~~i~~lVvDEah~ 383 (789)
....|.|.|..+|...+-+.. ..+ .-.+-|+|+.+.
T Consensus 74 -------------------~~~~v~v~TfHs~a~~il~~~~~~~g~-~~~~~il~~~~~ 112 (664)
T TIGR01074 74 -------------------EARGLTISTFHTLGLDIIKREYNALGY-KSNFSLFDETDQ 112 (664)
T ss_pred -------------------ccCCeEEEeHHHHHHHHHHHHHHHhCC-CCCCEEeCHHHH
Confidence 013577888877755443221 111 122456777763
No 240
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.99 E-value=0.034 Score=58.54 Aligned_cols=54 Identities=24% Similarity=0.301 Sum_probs=41.0
Q ss_pred CCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcC
Q 003881 218 FDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQ 290 (789)
Q Consensus 218 ~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~ 290 (789)
..+|..+.+|+++++|+.+.+.+... .-=+|+.+|||||||.. +.+|+.++.++
T Consensus 99 R~Ip~~i~~~e~LglP~i~~~~~~~~------------------~GLILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 99 RLIPSKIPTLEELGLPPIVRELAESP------------------RGLILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred eccCccCCCHHHcCCCHHHHHHHhCC------------------CceEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 45789999999999999877733211 11377889999999986 78888888654
No 241
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=94.97 E-value=0.093 Score=59.15 Aligned_cols=145 Identities=12% Similarity=0.230 Sum_probs=84.8
Q ss_pred CEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHH-HHHHHHHHHHHHhhhcCCeEEEEECCCChHHHH
Q 003881 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRE-LAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (789)
Q Consensus 264 dvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~Ptre-La~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~ 342 (789)
-.++.+..|||||.+.++-++..++.. ..+.++|++-|+.. |...++..+......+++....-....+. .+
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~-----~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i 75 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN-----KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EI 75 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc-----CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EE
Confidence 467889999999998888888887764 12466899989887 77777778877776666542221111110 00
Q ss_pred HHHhc-CCcEEEeCh-HHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcCC--CceEEEEeccCcHHHH
Q 003881 343 KELKA-GCEIVIATP-GRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP--DRQTLLFSATMPRKVE 418 (789)
Q Consensus 343 ~~l~~-~~dIiV~Tp-~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~--~~q~ll~SAT~~~~i~ 418 (789)
.+.. +..|++..- ..... ......+.++.+|||..+.. ..+..++..++. ....+++|.+++....
T Consensus 76 -~~~~~g~~i~f~g~~d~~~~-----ik~~~~~~~~~idEa~~~~~----~~~~~l~~rlr~~~~~~~i~~t~NP~~~~~ 145 (396)
T TIGR01547 76 -KILNTGKKFIFKGLNDKPNK-----LKSGAGIAIIWFEEASQLTF----EDIKELIPRLRETGGKKFIIFSSNPESPLH 145 (396)
T ss_pred -EecCCCeEEEeecccCChhH-----hhCcceeeeehhhhhhhcCH----HHHHHHHHHhhccCCccEEEEEcCcCCCcc
Confidence 1112 455666443 11111 11233468999999998743 244455444542 2224788888764333
Q ss_pred HHHHHHh
Q 003881 419 KLAREIL 425 (789)
Q Consensus 419 ~l~~~~l 425 (789)
-+...|.
T Consensus 146 w~~~~f~ 152 (396)
T TIGR01547 146 WVKKRFI 152 (396)
T ss_pred HHHHHHH
Confidence 3344443
No 242
>PRK12377 putative replication protein; Provisional
Probab=94.97 E-value=0.12 Score=54.20 Aligned_cols=45 Identities=13% Similarity=0.219 Sum_probs=27.4
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHH
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIY 315 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~ 315 (789)
..++++.+++|+|||.. +.++.+++... +..+ ++++..+|..++.
T Consensus 101 ~~~l~l~G~~GtGKThL-a~AIa~~l~~~-------g~~v-~~i~~~~l~~~l~ 145 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHL-AAAIGNRLLAK-------GRSV-IVVTVPDVMSRLH 145 (248)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHHHc-------CCCe-EEEEHHHHHHHHH
Confidence 35799999999999964 33444444321 3334 4445556666543
No 243
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.95 E-value=0.15 Score=65.82 Aligned_cols=65 Identities=29% Similarity=0.250 Sum_probs=45.4
Q ss_pred CCCcHHHHHHHHHHHcC--CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHH
Q 003881 246 EKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI 314 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~g--rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi 314 (789)
..+++-|.+++..++.. +-+++.+..|+|||.+ +-.++..+.. +....+..++.++||-..+..+
T Consensus 834 ~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~-l~~i~~~~~~---l~e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQ-FRAVMSAVNM---LPESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred cccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHH-HHHHHHHHHH---HhhccCceEEEEechHHHHHHH
Confidence 37899999999999965 6688899999999965 2222222211 0112356788899998777654
No 244
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.95 E-value=0.089 Score=60.21 Aligned_cols=109 Identities=15% Similarity=0.113 Sum_probs=58.5
Q ss_pred CCEEEEccCCChhhHHHHHHHHHH-HhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHH
Q 003881 263 RDIIGIAKTGSGKTAAFVLPMIVH-IMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (789)
Q Consensus 263 rdvll~a~TGsGKTla~llpil~~-l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~ 341 (789)
..+++.|++|+|||.. +.++.+ +... ..+.+++++ +..++...+...+....
T Consensus 142 npl~i~G~~G~GKTHL--l~Ai~~~l~~~-----~~~~~v~yv-~~~~f~~~~~~~l~~~~------------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHL--LKAAKNYIESN-----FSDLKVSYM-SGDEFARKAVDILQKTH------------------- 194 (450)
T ss_pred CceEEECCCCCcHHHH--HHHHHHHHHHh-----CCCCeEEEE-EHHHHHHHHHHHHHHhh-------------------
Confidence 4588999999999953 344433 3221 123445554 44566655544443210
Q ss_pred HHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccC-CChHHHHHHHhhcCC-CceEEEEeccCcHHH
Q 003881 342 FKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRP-DRQTLLFSATMPRKV 417 (789)
Q Consensus 342 ~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~-~f~~~i~~il~~l~~-~~q~ll~SAT~~~~i 417 (789)
+.+..+.. .+..+++|||||+|.+... .....+..+++.+.. ..|+|+.|-..|..+
T Consensus 195 ---------------~~~~~~~~----~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 195 ---------------KEIEQFKN----EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred ---------------hHHHHHHH----HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 01111111 2346788999999987532 233455666665543 345555555555444
No 245
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.91 E-value=0.18 Score=65.84 Aligned_cols=127 Identities=20% Similarity=0.169 Sum_probs=75.7
Q ss_pred CCCcHHHHHHHHHHHcC--CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhh
Q 003881 246 EKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~g--rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~ 323 (789)
..+++.|.+++..++.. +-+++.+..|+|||.+ +-.++..+... ....+..++.++||--.|..+. .
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l---~~~~~~~V~glAPTgrAAk~L~----e--- 1034 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTL---PESERPRVVGLGPTHRAVGEMR----S--- 1034 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHh---hcccCceEEEECCcHHHHHHHH----h---
Confidence 46899999999999975 5688899999999965 33333332111 1123567888999987775442 1
Q ss_pred hcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHH----hhcccccCceeEEEEeccchhccCCChHHHHHHHhh
Q 003881 324 SHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDML----KMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQ 399 (789)
Q Consensus 324 ~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l----~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~ 399 (789)
.++... |-.+|+... ..........++|||||+=++.. ..+..++..
T Consensus 1035 -~Gi~A~------------------------TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaSMv~~----~~m~~Ll~~ 1085 (1747)
T PRK13709 1035 -AGVDAQ------------------------TLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGN----TDMARAYAL 1085 (1747)
T ss_pred -cCcchh------------------------hHHHHhcccccccccccCCCCCCcEEEEEccccccH----HHHHHHHHh
Confidence 133221 222222111 01111223458999999997543 345555655
Q ss_pred cCC-CceEEEEecc
Q 003881 400 IRP-DRQTLLFSAT 412 (789)
Q Consensus 400 l~~-~~q~ll~SAT 412 (789)
+.. ..++|++.=+
T Consensus 1086 ~~~~garvVLVGD~ 1099 (1747)
T PRK13709 1086 IAAGGGRAVSSGDT 1099 (1747)
T ss_pred hhcCCCEEEEecch
Confidence 553 5677777666
No 246
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.87 E-value=0.45 Score=50.55 Aligned_cols=131 Identities=21% Similarity=0.289 Sum_probs=71.7
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeE-EEEcCcH--HHHHHHHHHHHHHhhhcCCeEEEEECCCC
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIG-VICAPTR--ELAHQIYLETKKFAKSHGIRVSAVYGGMS 337 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~v-LIl~Ptr--eLa~Qi~~~~~~~~~~~~i~v~~~~gg~~ 337 (789)
.+..+++++++|+|||..+...+ ..+.. .+..+ +|-+.+. ..+.||. .++...++.+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~-~~l~~-------~~~~v~~i~~D~~ri~~~~ql~----~~~~~~~~~~~~------ 135 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMA-WQFHG-------KKKTVGFITTDHSRIGTVQQLQ----DYVKTIGFEVIA------ 135 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHH-HHHHH-------cCCeEEEEecCCCCHHHHHHHH----HHhhhcCceEEe------
Confidence 44678999999999997644332 22211 13334 4444332 3444443 333323433321
Q ss_pred hHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhcc-CCChHHHHHHHhhcCCCceEEEEeccC-cH
Q 003881 338 KLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATM-PR 415 (789)
Q Consensus 338 ~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~-~~f~~~i~~il~~l~~~~q~ll~SAT~-~~ 415 (789)
..++..|...+..- .....+++||||-+=++.. ......+..++....++.-++.+|||. ..
T Consensus 136 ---------------~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~ 199 (270)
T PRK06731 136 ---------------VRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK 199 (270)
T ss_pred ---------------cCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH
Confidence 12444554444321 1234678999999976532 122334455555556665677899986 45
Q ss_pred HHHHHHHHHh
Q 003881 416 KVEKLAREIL 425 (789)
Q Consensus 416 ~i~~l~~~~l 425 (789)
.+...++.|-
T Consensus 200 d~~~~~~~f~ 209 (270)
T PRK06731 200 DMIEIITNFK 209 (270)
T ss_pred HHHHHHHHhC
Confidence 7777777764
No 247
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.81 E-value=0.15 Score=58.52 Aligned_cols=47 Identities=15% Similarity=0.250 Sum_probs=26.6
Q ss_pred ceeEEEEeccchhccCC-ChHHHHHHHhhcC-CCceEEEEeccCcHHHH
Q 003881 372 RVTYLVLDEADRMFDLG-FEPQIRSIVGQIR-PDRQTLLFSATMPRKVE 418 (789)
Q Consensus 372 ~i~~lVvDEah~m~~~~-f~~~i~~il~~l~-~~~q~ll~SAT~~~~i~ 418 (789)
.+++|||||+|.+.... ....+..+++.+. ...++++.|...|..+.
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~ 259 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELP 259 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH
Confidence 56789999999875432 1234445554443 34555554444554543
No 248
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=94.80 E-value=0.73 Score=53.68 Aligned_cols=123 Identities=20% Similarity=0.297 Sum_probs=79.8
Q ss_pred CCEEEEecccccHHHHHHHHHHcCCc------eeeccCCCCHHHHHHHHHHhh----cCCcceEEee--hhhhccCCCCC
Q 003881 471 GDVLVFASKKTTVDEIESQLAQKGFK------AAALHGDKDQASRMEILQKFK----SGVYHVLIAT--DVAARGLDIKS 538 (789)
Q Consensus 471 ~kvLVF~~s~~~a~~l~~~L~~~g~~------v~~lhg~~~~~eR~~~l~~F~----~G~~~VLVaT--~v~~rGlDI~~ 538 (789)
+.|++|+++++-...+.+.+.+.|+- =.++...... -+.++..|+ .|.-.||+|. .-+++|||+.+
T Consensus 630 gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~--~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D 707 (821)
T KOG1133|consen 630 GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT--VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFSD 707 (821)
T ss_pred CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc--HHHHHHHHHHHhhcCCCeEEEEEecccccccccccc
Confidence 79999999999999999999876531 1112222221 355666664 3555678776 67789999987
Q ss_pred --ccEEEEEcCCCC------------------------HHH--------HHHHHhhcCCCCCCCcEEEEEEccccHHHHH
Q 003881 539 --IKSVVNFDIARD------------------------MDM--------HVHRIGRTGRAGDKDGTAYTLVTQKEARFAG 584 (789)
Q Consensus 539 --v~~VI~~d~p~s------------------------~~~--------yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~ 584 (789)
++.||..++|.. -+. .-|.|||+-|.- +.--+++|+. .+++.
T Consensus 708 ~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~-~DYA~i~LlD---~RY~~ 783 (821)
T KOG1133|consen 708 DLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHR-KDYASIYLLD---KRYAR 783 (821)
T ss_pred ccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhh-ccceeEEEeh---hhhcC
Confidence 788888877652 111 249999999975 5556666664 33332
Q ss_pred HHHHHHHHcCCCccHHHHHHHH
Q 003881 585 ELVNSLIAAGQNVSMELMDLAM 606 (789)
Q Consensus 585 ~lv~~l~~~~q~vp~~l~~~a~ 606 (789)
.+.+ .+|.|+.+...
T Consensus 784 p~~R-------KLp~WI~~~v~ 798 (821)
T KOG1133|consen 784 PLSR-------KLPKWIRKRVH 798 (821)
T ss_pred chhh-------hccHHHHhHhc
Confidence 2222 67888755443
No 249
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.73 E-value=0.5 Score=54.44 Aligned_cols=165 Identities=17% Similarity=0.215 Sum_probs=77.5
Q ss_pred CcccCCCCHHHHHHHHHcCC--CCCcHHHHHHHHH------------HHcCCCEEEEccCCChhhHHHHHHHHHHHhcCc
Q 003881 226 TFEDCGFSTQLMHAISKQGY--EKPTSIQCQALPI------------ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQP 291 (789)
Q Consensus 226 sf~~~~l~~~l~~~l~~~g~--~~ptpiQ~~~i~~------------il~grdvll~a~TGsGKTla~llpil~~l~~~~ 291 (789)
.+...|+++.+...|...-- ..........+.. +..++.+++++++|+|||......+. .+...
T Consensus 300 ~L~~~Gvs~~la~~L~~~l~~~~~~~~~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakLAa-~la~~- 377 (559)
T PRK12727 300 LMDDYGFDAGLTRDVAMQIPADTELHRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQ-RFAAQ- 377 (559)
T ss_pred HHHHCCCCHHHHHHHHHhhhcccchhhHHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHHHHHH-HHHHh-
Confidence 34566888887777644210 1111111111121 22456788899999999975322222 22111
Q ss_pred cccccCCCeEE-EEcC-cHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccc
Q 003881 292 ELQKEEGPIGV-ICAP-TRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALT 369 (789)
Q Consensus 292 ~~~~~~gp~vL-Il~P-treLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~ 369 (789)
..+.++. |-+- .|..+. +.++.+....++.+.. +.++..|...+. .
T Consensus 378 ----~~gkkVaLIdtDtyRigA~---EQLk~ya~iLgv~v~~---------------------a~d~~~L~~aL~----~ 425 (559)
T PRK12727 378 ----HAPRDVALVTTDTQRVGGR---EQLHSYGRQLGIAVHE---------------------ADSAESLLDLLE----R 425 (559)
T ss_pred ----cCCCceEEEecccccccHH---HHHHHhhcccCceeEe---------------------cCcHHHHHHHHH----H
Confidence 1122233 3332 343332 2233333323332211 123344445543 2
Q ss_pred cCceeEEEEeccchhccC-CChHHHHHHHhhcCCCceEEEEeccCc-HHHHHHHHHHh
Q 003881 370 MSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMP-RKVEKLAREIL 425 (789)
Q Consensus 370 l~~i~~lVvDEah~m~~~-~f~~~i~~il~~l~~~~q~ll~SAT~~-~~i~~l~~~~l 425 (789)
+.++++||||.+=++... ....++..+ ........+|+++++.. ..+..+++.|.
T Consensus 426 l~~~DLVLIDTaG~s~~D~~l~eeL~~L-~aa~~~a~lLVLpAtss~~Dl~eii~~f~ 482 (559)
T PRK12727 426 LRDYKLVLIDTAGMGQRDRALAAQLNWL-RAARQVTSLLVLPANAHFSDLDEVVRRFA 482 (559)
T ss_pred hccCCEEEecCCCcchhhHHHHHHHHHH-HHhhcCCcEEEEECCCChhHHHHHHHHHH
Confidence 346789999999764221 111122222 22233456778888864 35555555553
No 250
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=94.70 E-value=0.049 Score=63.46 Aligned_cols=82 Identities=27% Similarity=0.460 Sum_probs=65.1
Q ss_pred HHHhhcCCcceEEeehhhhccCCCCCccEEEE--------EcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEcc---ccHH
Q 003881 513 LQKFKSGVYHVLIATDVAARGLDIKSIKSVVN--------FDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ---KEAR 581 (789)
Q Consensus 513 l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~--------~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~---~d~~ 581 (789)
-++|+.|+..|-|-..+++-||.+..-+.|+| +.+||+.+.-+|..||++|..+-.+--|+|+.. .+.+
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErR 929 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERR 929 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchH
Confidence 35799999999999999999999988766664 889999999999999999998555555555433 4777
Q ss_pred HHHHHHHHHHHcC
Q 003881 582 FAGELVNSLIAAG 594 (789)
Q Consensus 582 ~~~~lv~~l~~~~ 594 (789)
++.-+.+.|+..+
T Consensus 930 FAS~VAKRLESLG 942 (1300)
T KOG1513|consen 930 FASIVAKRLESLG 942 (1300)
T ss_pred HHHHHHHHHHhhc
Confidence 7777777776544
No 251
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.69 E-value=0.16 Score=59.60 Aligned_cols=49 Identities=14% Similarity=0.241 Sum_probs=31.4
Q ss_pred cCceeEEEEeccchhccCC-ChHHHHHHHhhcCC-CceEEEEeccCcHHHH
Q 003881 370 MSRVTYLVLDEADRMFDLG-FEPQIRSIVGQIRP-DRQTLLFSATMPRKVE 418 (789)
Q Consensus 370 l~~i~~lVvDEah~m~~~~-f~~~i~~il~~l~~-~~q~ll~SAT~~~~i~ 418 (789)
+.++++||||++|.+.... ....+..+++.+.. ..++|+.|-..|..+.
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV 425 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhh
Confidence 3457889999999876533 24456666666544 4667765555665543
No 252
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.62 E-value=0.15 Score=52.46 Aligned_cols=42 Identities=12% Similarity=0.286 Sum_probs=24.5
Q ss_pred eeEEEEeccchhccC-CChHHHHHHHhhcCCCceEEEEeccCc
Q 003881 373 VTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMP 414 (789)
Q Consensus 373 i~~lVvDEah~m~~~-~f~~~i~~il~~l~~~~q~ll~SAT~~ 414 (789)
..+|||||+|.+... .+...+..++..+......++++++.+
T Consensus 91 ~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~ 133 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAA 133 (226)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 357999999987543 224456666655433223455566543
No 253
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=94.58 E-value=0.032 Score=68.34 Aligned_cols=105 Identities=19% Similarity=0.175 Sum_probs=82.7
Q ss_pred hcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEE
Q 003881 463 KLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSV 542 (789)
Q Consensus 463 ~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~V 542 (789)
.++......++|||+.-....+.+...+...++.+..--+. .+-...+..|++ --.+||-+...+-|+|+-++.||
T Consensus 1214 ~iK~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t---~d~~dc~~~fk~-I~clll~~~~~~~GLNL~eA~Hv 1289 (1394)
T KOG0298|consen 1214 YIKFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGET---EDFDDCIICFKS-IDCLLLFVSKGSKGLNLIEATHV 1289 (1394)
T ss_pred HHhccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccCC---cchhhhhhhccc-ceEEEEEeccCcccccHHhhhhh
Confidence 33333345699999999999999999988877766555443 334567777776 33457778889999999999999
Q ss_pred EEEcCCCCHHHHHHHHhhcCCCCCCCcEE
Q 003881 543 VNFDIARDMDMHVHRIGRTGRAGDKDGTA 571 (789)
Q Consensus 543 I~~d~p~s~~~yiQriGR~gR~G~k~G~~ 571 (789)
+..++-.|+..-.|.+||++|.|++..+.
T Consensus 1290 fl~ePiLN~~~E~QAigRvhRiGQ~~pT~ 1318 (1394)
T KOG0298|consen 1290 FLVEPILNPGDEAQAIGRVHRIGQKRPTF 1318 (1394)
T ss_pred heeccccCchHHHhhhhhhhhcccccchh
Confidence 99999999999999999999999655544
No 254
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=94.53 E-value=0.063 Score=64.69 Aligned_cols=71 Identities=18% Similarity=0.128 Sum_probs=53.8
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhh
Q 003881 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (789)
Q Consensus 247 ~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~ 323 (789)
.+++-|.+++.. ....+++.|..|||||.+ ++.-+.+++..... ...++|+|+-|+..|..+.+.+.+++.
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~v-L~~Ria~Li~~~~v---~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRV-ITNKIAHLIRGCGY---QARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHhcCC---CHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 478899999865 346789999999999987 55666676643211 123589999999999999988887654
No 255
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.47 E-value=0.26 Score=55.71 Aligned_cols=47 Identities=15% Similarity=0.248 Sum_probs=26.2
Q ss_pred ceeEEEEeccchhccCC-ChHHHHHHHhhc-CCCceEEEEeccCcHHHH
Q 003881 372 RVTYLVLDEADRMFDLG-FEPQIRSIVGQI-RPDRQTLLFSATMPRKVE 418 (789)
Q Consensus 372 ~i~~lVvDEah~m~~~~-f~~~i~~il~~l-~~~~q~ll~SAT~~~~i~ 418 (789)
.+++|||||+|.+.... ....+..++..+ ....++|+.|...|..+.
T Consensus 199 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~ 247 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELP 247 (405)
T ss_pred hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHh
Confidence 46789999999876532 123344555444 234555554444454443
No 256
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.44 E-value=0.24 Score=52.49 Aligned_cols=57 Identities=14% Similarity=0.248 Sum_probs=38.0
Q ss_pred ccccCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEeccC---cHHHHHHHHHH
Q 003881 367 ALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM---PRKVEKLAREI 424 (789)
Q Consensus 367 ~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~---~~~i~~l~~~~ 424 (789)
......+.++||||||.|-... ...++..+........+++.+..+ +..+..-+.+|
T Consensus 124 ~~~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~Kf 183 (346)
T KOG0989|consen 124 GYPCPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKF 183 (346)
T ss_pred CCCCCcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHh
Confidence 3456678999999999887543 335666777766677788888774 34444444444
No 257
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.40 E-value=0.28 Score=48.64 Aligned_cols=48 Identities=17% Similarity=0.258 Sum_probs=30.7
Q ss_pred EEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHH
Q 003881 265 IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 265 vll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~ 321 (789)
+++.+++|+|||.. .+-++...++ ++..++++.. .+...++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l-~~~~~~~~~~-------~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTF-ALQFLYAGLA-------RGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHH-HHHHHHHHHH-------CCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 68899999999975 3333333322 3556777754 45566776666554
No 258
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.24 E-value=0.24 Score=52.28 Aligned_cols=52 Identities=15% Similarity=0.287 Sum_probs=33.8
Q ss_pred HHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHH
Q 003881 258 IILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLET 318 (789)
Q Consensus 258 ~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~ 318 (789)
++.++.++++.+++|+|||.. +.++.+.+++ .|.. ++++++.+|+.++...+
T Consensus 101 ~~~~~~nl~l~G~~G~GKThL-a~Ai~~~l~~-------~g~s-v~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 101 FFERGENLVLLGPPGVGKTHL-AIAIGNELLK-------AGIS-VLFITAPDLLSKLKAAF 152 (254)
T ss_pred HhccCCcEEEECCCCCcHHHH-HHHHHHHHHH-------cCCe-EEEEEHHHHHHHHHHHH
Confidence 334778999999999999965 3333344432 1344 55567778887765443
No 259
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.24 E-value=0.3 Score=52.19 Aligned_cols=112 Identities=14% Similarity=0.188 Sum_probs=59.1
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCcccc----ccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCCh
Q 003881 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQ----KEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSK 338 (789)
Q Consensus 263 rdvll~a~TGsGKTla~llpil~~l~~~~~~~----~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~ 338 (789)
.+++++++|+.|||.. +.++....+.. ...-|.++|-+|...-..-++..+-..+ +.... .....
T Consensus 62 p~lLivG~snnGKT~I-----i~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l---gaP~~---~~~~~ 130 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI-----IERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL---GAPYR---PRDRV 130 (302)
T ss_pred CceEEecCCCCcHHHH-----HHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh---CcccC---CCCCH
Confidence 5899999999999974 34444322111 1123777777887766666655554432 22110 01111
Q ss_pred HHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHH--HHHHHhhcCCCc
Q 003881 339 LDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQ--IRSIVGQIRPDR 404 (789)
Q Consensus 339 ~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~--i~~il~~l~~~~ 404 (789)
... . ...+.++. --.+.+|||||+|.++......+ +...++.+....
T Consensus 131 ~~~-~-------------~~~~~llr-----~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL 179 (302)
T PF05621_consen 131 AKL-E-------------QQVLRLLR-----RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL 179 (302)
T ss_pred HHH-H-------------HHHHHHHH-----HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc
Confidence 100 0 01112222 23678899999999887654332 334444444443
No 260
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.23 E-value=0.16 Score=62.12 Aligned_cols=42 Identities=24% Similarity=0.286 Sum_probs=27.9
Q ss_pred CceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEeccCc
Q 003881 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (789)
Q Consensus 371 ~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~ 414 (789)
.+++++||||+|+|-... .+.+.++|+..+....+||.+ |-+
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t-t~~ 160 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT-TEP 160 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe-CCh
Confidence 578899999999986543 335566666655555555554 533
No 261
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=94.23 E-value=0.1 Score=63.02 Aligned_cols=98 Identities=18% Similarity=0.221 Sum_probs=74.2
Q ss_pred EEecCCCcccHHHH-HHhcCCCCCCCCEEEEecccccHHHHHHHHHH----cCCceeeccCCCCHHHHHHHHHHhhcCCc
Q 003881 447 VHVIPSDAEKLPWL-LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVY 521 (789)
Q Consensus 447 ~~~~~~~~~k~~~L-~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~----~g~~v~~lhg~~~~~eR~~~l~~F~~G~~ 521 (789)
+...+....|.... +..+.....+.+++|.+++..-+...++.|++ .++++..+||+++..+|..++..+.+|..
T Consensus 286 Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~ 365 (681)
T PRK10917 286 LLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEA 365 (681)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCC
Confidence 34445556665432 22232223455899999999988887777654 47899999999999999999999999999
Q ss_pred ceEEeehh-hhccCCCCCccEEEE
Q 003881 522 HVLIATDV-AARGLDIKSIKSVVN 544 (789)
Q Consensus 522 ~VLVaT~v-~~rGlDI~~v~~VI~ 544 (789)
.|+|+|.. +...+.+.++.+||.
T Consensus 366 ~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 366 DIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred CEEEchHHHhcccchhcccceEEE
Confidence 99999964 556678888888884
No 262
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.21 E-value=0.5 Score=53.69 Aligned_cols=53 Identities=19% Similarity=0.328 Sum_probs=34.5
Q ss_pred eeEEEEeccchhcc-CCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHh
Q 003881 373 VTYLVLDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREIL 425 (789)
Q Consensus 373 i~~lVvDEah~m~~-~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l 425 (789)
.++||||.+-++.. ......+..+...+.++.-++.++|+........++.|.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F~ 229 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFH 229 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHHH
Confidence 37899999965322 123334556666666777788889988766555565543
No 263
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.16 E-value=0.38 Score=52.32 Aligned_cols=39 Identities=15% Similarity=0.201 Sum_probs=25.3
Q ss_pred ceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEe
Q 003881 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 372 ~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~S 410 (789)
..++|||||+|.+........+..++...+...++|+.+
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 457899999998733323445566666666666665544
No 264
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.15 E-value=0.59 Score=49.85 Aligned_cols=132 Identities=20% Similarity=0.309 Sum_probs=66.6
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEc-C-cHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHH
Q 003881 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA-P-TRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (789)
Q Consensus 263 rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~-P-treLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~ 340 (789)
+-+++++++|+|||....-.+ .++ . ..+.+++++. - .|.-+. +.+..|+...++.+.....+..
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA-~~l-~------~~g~~V~li~~D~~r~~a~---~ql~~~~~~~~i~~~~~~~~~d--- 138 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLA-NKL-K------KQGKSVLLAAGDTFRAAAI---EQLEEWAKRLGVDVIKQKEGAD--- 138 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHH-HHH-H------hcCCEEEEEeCCCCCHHHH---HHHHHHHHhCCeEEEeCCCCCC---
Confidence 457778999999997633322 222 2 1244555553 3 344332 3455555545544332221111
Q ss_pred HHHHHhcCCcEEEeChHH-HHHHHhhcccccCceeEEEEeccchhcc-CCChHHHHHHHhhcC------CCceEEEEecc
Q 003881 341 QFKELKAGCEIVIATPGR-LIDMLKMKALTMSRVTYLVLDEADRMFD-LGFEPQIRSIVGQIR------PDRQTLLFSAT 412 (789)
Q Consensus 341 ~~~~l~~~~dIiV~Tp~~-L~~~l~~~~~~l~~i~~lVvDEah~m~~-~~f~~~i~~il~~l~------~~~q~ll~SAT 412 (789)
|.. +.+.+.. .....+++||||=+-++.. ......+..+...+. ++--++.++||
T Consensus 139 ---------------p~~~~~~~l~~--~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~ 201 (272)
T TIGR00064 139 ---------------PAAVAFDAIQK--AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT 201 (272)
T ss_pred ---------------HHHHHHHHHHH--HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECC
Confidence 111 1111111 1124567888888876432 112234445554444 56678889998
Q ss_pred CcHHHHHHHHHHh
Q 003881 413 MPRKVEKLAREIL 425 (789)
Q Consensus 413 ~~~~i~~l~~~~l 425 (789)
........+..|.
T Consensus 202 ~~~~~~~~~~~f~ 214 (272)
T TIGR00064 202 TGQNALEQAKVFN 214 (272)
T ss_pred CCHHHHHHHHHHH
Confidence 7665545555554
No 265
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=93.95 E-value=0.36 Score=57.58 Aligned_cols=149 Identities=18% Similarity=0.245 Sum_probs=89.0
Q ss_pred HHHHcCCCCCcHHHHHHHHHHHcCC--CEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHH
Q 003881 239 AISKQGYEKPTSIQCQALPIILSGR--DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYL 316 (789)
Q Consensus 239 ~l~~~g~~~ptpiQ~~~i~~il~gr--dvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~ 316 (789)
.+.....+.+..-|.+.+..++..+ -+++.|.=|=|||.+.-+.+. .+.... ..-.++|.+|+.+-++.+.+
T Consensus 206 ~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~-~~~~~~-----~~~~iiVTAP~~~nv~~Lf~ 279 (758)
T COG1444 206 ELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALA-AAARLA-----GSVRIIVTAPTPANVQTLFE 279 (758)
T ss_pred HHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHH-HHHHhc-----CCceEEEeCCCHHHHHHHHH
Confidence 3444445566666666777777653 577889999999987655542 221111 03468999999999988888
Q ss_pred HHHHHhhhcCCeEEEEECCCChHHHHHHHh-cCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHH
Q 003881 317 ETKKFAKSHGIRVSAVYGGMSKLDQFKELK-AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRS 395 (789)
Q Consensus 317 ~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~-~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~ 395 (789)
.+.+-+...|++--+....... +.... ....|=.-+|.... . .-++||||||=.|- .+.+..
T Consensus 280 fa~~~l~~lg~~~~v~~d~~g~---~~~~~~~~~~i~y~~P~~a~---------~-~~DllvVDEAAaIp----lplL~~ 342 (758)
T COG1444 280 FAGKGLEFLGYKRKVAPDALGE---IREVSGDGFRIEYVPPDDAQ---------E-EADLLVVDEAAAIP----LPLLHK 342 (758)
T ss_pred HHHHhHHHhCCccccccccccc---eeeecCCceeEEeeCcchhc---------c-cCCEEEEehhhcCC----hHHHHH
Confidence 8887777666543222211100 00000 11223344443221 1 16789999998643 556666
Q ss_pred HHhhcCCCceEEEEeccCc
Q 003881 396 IVGQIRPDRQTLLFSATMP 414 (789)
Q Consensus 396 il~~l~~~~q~ll~SAT~~ 414 (789)
++... +.++||.|+.
T Consensus 343 l~~~~----~rv~~sTTIh 357 (758)
T COG1444 343 LLRRF----PRVLFSTTIH 357 (758)
T ss_pred HHhhc----CceEEEeeec
Confidence 66654 3689999984
No 266
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=93.88 E-value=1.2 Score=43.39 Aligned_cols=54 Identities=15% Similarity=0.281 Sum_probs=40.6
Q ss_pred ccCceeEEEEeccchhccCCC--hHHHHHHHhhcCCCceEEEEeccCcHHHHHHHH
Q 003881 369 TMSRVTYLVLDEADRMFDLGF--EPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAR 422 (789)
Q Consensus 369 ~l~~i~~lVvDEah~m~~~~f--~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~ 422 (789)
....+++|||||+-..++.++ ...+..++...+....+|+.+-.+|+.+.+++.
T Consensus 92 ~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 92 ASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred hcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 345789999999998877765 456777787777777777777778888766553
No 267
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=93.81 E-value=0.33 Score=55.44 Aligned_cols=53 Identities=9% Similarity=0.241 Sum_probs=32.0
Q ss_pred CceeEEEEeccchhccCC-ChHHHHHHHhhcC-CCceEEEEeccCcHHHHHHHHH
Q 003881 371 SRVTYLVLDEADRMFDLG-FEPQIRSIVGQIR-PDRQTLLFSATMPRKVEKLARE 423 (789)
Q Consensus 371 ~~i~~lVvDEah~m~~~~-f~~~i~~il~~l~-~~~q~ll~SAT~~~~i~~l~~~ 423 (789)
..+++|||||+|.+.... ....+..+++.+. ...|+|+.|.+.|..+..+...
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~r 255 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEER 255 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHH
Confidence 467889999999876532 2344555555442 3456666665566665544333
No 268
>PRK09183 transposase/IS protein; Provisional
Probab=93.78 E-value=0.26 Score=52.17 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=18.6
Q ss_pred HHHHcCCCEEEEccCCChhhHH
Q 003881 257 PIILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 257 ~~il~grdvll~a~TGsGKTla 278 (789)
.++..+.++++.+|+|+|||..
T Consensus 97 ~~i~~~~~v~l~Gp~GtGKThL 118 (259)
T PRK09183 97 SFIERNENIVLLGPSGVGKTHL 118 (259)
T ss_pred CchhcCCeEEEEeCCCCCHHHH
Confidence 3466789999999999999964
No 269
>PRK05580 primosome assembly protein PriA; Validated
Probab=93.76 E-value=0.22 Score=60.02 Aligned_cols=94 Identities=18% Similarity=0.251 Sum_probs=72.6
Q ss_pred CCcccHHHHHHhcCCCC-CCCCEEEEecccccHHHHHHHHHH-cCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehh
Q 003881 452 SDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQ-KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDV 529 (789)
Q Consensus 452 ~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~-~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v 529 (789)
....|....+..+...+ .+.++||.++++..+.++.+.|++ .+..+..+||+++..+|..+......|..+|+|+|..
T Consensus 171 TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrs 250 (679)
T PRK05580 171 TGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARS 250 (679)
T ss_pred CCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccH
Confidence 34556555444433322 345899999999999999999976 4788999999999999999999999999999999964
Q ss_pred hhccCCCCCccEEEEEc
Q 003881 530 AARGLDIKSIKSVVNFD 546 (789)
Q Consensus 530 ~~rGlDI~~v~~VI~~d 546 (789)
+- -+.+.++.+||.-+
T Consensus 251 al-~~p~~~l~liVvDE 266 (679)
T PRK05580 251 AL-FLPFKNLGLIIVDE 266 (679)
T ss_pred Hh-cccccCCCEEEEEC
Confidence 33 25677888888644
No 270
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=93.73 E-value=0.67 Score=56.08 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=16.5
Q ss_pred CE-EEEccCCChhhHHHHHHHHHHH
Q 003881 264 DI-IGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 264 dv-ll~a~TGsGKTla~llpil~~l 287 (789)
++ +|.|+||+|||++ +..++..+
T Consensus 782 nvLYIyG~PGTGKTAT-VK~VLrEL 805 (1164)
T PTZ00112 782 QILYISGMPGTGKTAT-VYSVIQLL 805 (1164)
T ss_pred ceEEEECCCCCCHHHH-HHHHHHHH
Confidence 44 5899999999987 44444544
No 271
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.64 E-value=0.44 Score=53.56 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=18.0
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHH
Q 003881 263 RDIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 263 rdvll~a~TGsGKTla~llpil~~l 287 (789)
.++++.|++|+|||.. +-.++.++
T Consensus 56 ~~~lI~G~~GtGKT~l-~~~v~~~l 79 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT-VKKVFEEL 79 (394)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHH
Confidence 5799999999999975 44444444
No 272
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.63 E-value=0.57 Score=50.82 Aligned_cols=48 Identities=13% Similarity=0.106 Sum_probs=26.1
Q ss_pred cCceeEEEEeccchhccCCCh--HHHHHHHhh-cCCCceEEEEeccCcHHH
Q 003881 370 MSRVTYLVLDEADRMFDLGFE--PQIRSIVGQ-IRPDRQTLLFSATMPRKV 417 (789)
Q Consensus 370 l~~i~~lVvDEah~m~~~~f~--~~i~~il~~-l~~~~q~ll~SAT~~~~i 417 (789)
+..+++|||||...-....|. ..+..|+.. +.....|++.|--.+..+
T Consensus 215 l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el 265 (306)
T PRK08939 215 VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDEL 265 (306)
T ss_pred hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHH
Confidence 457889999999843222222 233445443 234555666665544443
No 273
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=93.63 E-value=0.26 Score=63.54 Aligned_cols=124 Identities=19% Similarity=0.127 Sum_probs=77.9
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003881 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (789)
Q Consensus 247 ~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~ 326 (789)
+.|+-|.++|. ..++++++.|..|||||.+.+--++..+... ..-..+|+|+=|+..|..+.+.+.+.+...-
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-----~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~ 73 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG-----VDIDRLLVVTFTNAAAREMKERIEEALQKAL 73 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC-----CCHhhEEEEeccHHHHHHHHHHHHHHHHHHH
Confidence 36889999987 4688999999999999988555555555432 1123489999999999998888887654211
Q ss_pred CeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCc--eeEEEEeccch
Q 003881 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSR--VTYLVLDEADR 383 (789)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~--i~~lVvDEah~ 383 (789)
-. ........+.+..-...-|+|...+...+-+.....-. -.+=|+||...
T Consensus 74 ~~------~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 74 QQ------EPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred hc------CchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 00 00011111122222456789988886554443322222 24566888874
No 274
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.61 E-value=0.48 Score=55.80 Aligned_cols=41 Identities=12% Similarity=0.206 Sum_probs=26.1
Q ss_pred cCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEec
Q 003881 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSA 411 (789)
Q Consensus 370 l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SA 411 (789)
..+++++||||+|+|....+ +.+.++|+.-+....+|+.|.
T Consensus 122 ~gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred cCCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEEeC
Confidence 35688999999998865433 344455555455555555544
No 275
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=93.48 E-value=0.32 Score=50.23 Aligned_cols=43 Identities=16% Similarity=0.311 Sum_probs=26.2
Q ss_pred ceeEEEEeccchhccCCChHHHHHHHhhcCCCce-EEEEeccCcH
Q 003881 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ-TLLFSATMPR 415 (789)
Q Consensus 372 ~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q-~ll~SAT~~~ 415 (789)
..++|||||+|.+-.. -...+..++..+..... +++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 4567999999986432 23445555555443333 5777777544
No 276
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.39 E-value=0.68 Score=52.23 Aligned_cols=133 Identities=15% Similarity=0.155 Sum_probs=67.3
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHH
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~ 340 (789)
.++-+.++++||+|||......+-.+++.. ......+|.+.+.-++ ..+.+..++..+++.+..+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~-----~~~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~~v~------- 255 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRH-----GADKVALLTTDSYRIG--GHEQLRIYGKLLGVSVRSIK------- 255 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc-----CCCeEEEEecCCcchh--HHHHHHHHHHHcCCceecCC-------
Confidence 456688899999999976332222222221 1123356666664332 23445556655565543222
Q ss_pred HHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhcc-CCChHHHHHHHhhcCCCceEEEEeccCc-HHHH
Q 003881 341 QFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMP-RKVE 418 (789)
Q Consensus 341 ~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~-~~f~~~i~~il~~l~~~~q~ll~SAT~~-~~i~ 418 (789)
++..+...+. .+...++++||.+=+... .....++..+.....+...+|.++||.. ..+.
T Consensus 256 --------------~~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~ 317 (420)
T PRK14721 256 --------------DIADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLD 317 (420)
T ss_pred --------------CHHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHH
Confidence 2222222221 255667788888633211 0112233333222234456788999964 4455
Q ss_pred HHHHHHh
Q 003881 419 KLAREIL 425 (789)
Q Consensus 419 ~l~~~~l 425 (789)
+.+..|-
T Consensus 318 ~~~~~f~ 324 (420)
T PRK14721 318 EVISAYQ 324 (420)
T ss_pred HHHHHhc
Confidence 6665553
No 277
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=93.39 E-value=0.97 Score=53.32 Aligned_cols=149 Identities=12% Similarity=0.161 Sum_probs=81.2
Q ss_pred CCcHHHHHHHHHHH---cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhh
Q 003881 247 KPTSIQCQALPIIL---SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (789)
Q Consensus 247 ~ptpiQ~~~i~~il---~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~ 323 (789)
.|.|.=.+-|..++ ..+-.++.+|=|.|||.+..+ ++.+++.. .+..++|.+|...-+.++.+.+++++.
T Consensus 169 ~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi-~l~~La~f------~Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 169 APSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAI-ILAAMISF------LEIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred CCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHH-HHHHHHHh------cCCeEEEECCChhhHHHHHHHHHHHHH
Confidence 34444444444443 556788889999999976443 33344321 256799999999999999999888886
Q ss_pred hcC--------CeEEEEECCCChHHHH--HHHhcC-CcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHH
Q 003881 324 SHG--------IRVSAVYGGMSKLDQF--KELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQ 392 (789)
Q Consensus 324 ~~~--------i~v~~~~gg~~~~~~~--~~l~~~-~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~ 392 (789)
..+ .++..+.||...-... ...+.+ ..|.+++-. .+...-..+++||||||+-+-+ ..
T Consensus 242 ~lg~~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAfI~~----~~ 310 (752)
T PHA03333 242 AYQHKPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAFVNP----GA 310 (752)
T ss_pred HhccccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECcccCCH----HH
Confidence 432 1122222221100000 000001 122222110 1112223568999999998655 34
Q ss_pred HHHHHhhcC-CCceEEEEeccC
Q 003881 393 IRSIVGQIR-PDRQTLLFSATM 413 (789)
Q Consensus 393 i~~il~~l~-~~~q~ll~SAT~ 413 (789)
+..++-.+. ...+++++|.+.
T Consensus 311 l~aIlP~l~~~~~k~IiISS~~ 332 (752)
T PHA03333 311 LLSVLPLMAVKGTKQIHISSPV 332 (752)
T ss_pred HHHHHHHHccCCCceEEEeCCC
Confidence 444444443 356677777775
No 278
>PTZ00293 thymidine kinase; Provisional
Probab=93.33 E-value=0.41 Score=48.76 Aligned_cols=39 Identities=18% Similarity=0.059 Sum_probs=25.4
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcH
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTR 308 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~Ptr 308 (789)
|+=.++++||+||||...+-.+-++. ..+.+++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~--------~ag~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFT--------YSEKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHH--------HcCCceEEEEecc
Confidence 45568899999999976333333332 2245588888863
No 279
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.33 E-value=0.5 Score=54.22 Aligned_cols=19 Identities=32% Similarity=0.359 Sum_probs=15.2
Q ss_pred CCCEEEEccCCChhhHHHH
Q 003881 262 GRDIIGIAKTGSGKTAAFV 280 (789)
Q Consensus 262 grdvll~a~TGsGKTla~l 280 (789)
++-++++++||+|||.+..
T Consensus 256 g~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTA 274 (484)
T ss_pred CcEEEEECCCCccHHHHHH
Confidence 4567889999999998633
No 280
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=93.29 E-value=0.19 Score=60.33 Aligned_cols=96 Identities=20% Similarity=0.246 Sum_probs=72.8
Q ss_pred ecCCCcccHHH-HHHhcCCCCCCCCEEEEecccccHHHHHHHHHH----cCCceeeccCCCCHHHHHHHHHHhhcCCcce
Q 003881 449 VIPSDAEKLPW-LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYHV 523 (789)
Q Consensus 449 ~~~~~~~k~~~-L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~----~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~V 523 (789)
..+....|... ++..+.....+.+++|.+++..-+.++++.+.+ .++++..+||+++..+|..++....+|+..|
T Consensus 262 ~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~I 341 (630)
T TIGR00643 262 QGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHL 341 (630)
T ss_pred ECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCE
Confidence 33445555433 223333233456899999999998888777665 3789999999999999999999999999999
Q ss_pred EEeehh-hhccCCCCCccEEEE
Q 003881 524 LIATDV-AARGLDIKSIKSVVN 544 (789)
Q Consensus 524 LVaT~v-~~rGlDI~~v~~VI~ 544 (789)
+|+|.. +...+.+.++.+||.
T Consensus 342 iVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 342 VVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred EEecHHHHhccccccccceEEE
Confidence 999964 456678888888874
No 281
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=93.29 E-value=0.23 Score=56.13 Aligned_cols=31 Identities=26% Similarity=0.266 Sum_probs=25.3
Q ss_pred CcHHHHHHHHHHHcCCCEEEEccCCChhhHH
Q 003881 248 PTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 248 ptpiQ~~~i~~il~grdvll~a~TGsGKTla 278 (789)
+-......+..+..++++++.+++|+|||..
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~l 210 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFV 210 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHH
Confidence 4445566677788899999999999999965
No 282
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=93.23 E-value=0.35 Score=53.12 Aligned_cols=36 Identities=28% Similarity=0.441 Sum_probs=22.9
Q ss_pred ceeEEEEeccchhccCCChHHHH-HHHhhcCCCceEEEEeccC
Q 003881 372 RVTYLVLDEADRMFDLGFEPQIR-SIVGQIRPDRQTLLFSATM 413 (789)
Q Consensus 372 ~i~~lVvDEah~m~~~~f~~~i~-~il~~l~~~~q~ll~SAT~ 413 (789)
+=.+|+|||+||+ ..... .+|-++ .+..++++.||-
T Consensus 104 r~tiLflDEIHRf-----nK~QQD~lLp~v-E~G~iilIGATT 140 (436)
T COG2256 104 RRTILFLDEIHRF-----NKAQQDALLPHV-ENGTIILIGATT 140 (436)
T ss_pred CceEEEEehhhhc-----Chhhhhhhhhhh-cCCeEEEEeccC
Confidence 3457999999993 33333 334433 456688888884
No 283
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.19 E-value=0.67 Score=53.00 Aligned_cols=51 Identities=14% Similarity=0.350 Sum_probs=29.5
Q ss_pred ceeEEEEeccchhccCC-ChHHHHHHHhhcC-CCceEEEEeccCcHHHHHHHH
Q 003881 372 RVTYLVLDEADRMFDLG-FEPQIRSIVGQIR-PDRQTLLFSATMPRKVEKLAR 422 (789)
Q Consensus 372 ~i~~lVvDEah~m~~~~-f~~~i~~il~~l~-~~~q~ll~SAT~~~~i~~l~~ 422 (789)
.+++|||||+|.+.+.. ....+..+++.+. ...++|+.|...|..+..+..
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~ 246 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQD 246 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHH
Confidence 46789999999876532 2234445554443 344555555556655544433
No 284
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=93.16 E-value=0.42 Score=52.35 Aligned_cols=41 Identities=12% Similarity=0.032 Sum_probs=29.7
Q ss_pred CcHHHHHHHHHHHcC----CCEEEEccCCChhhHHHHHHHHHHHhc
Q 003881 248 PTSIQCQALPIILSG----RDIIGIAKTGSGKTAAFVLPMIVHIMD 289 (789)
Q Consensus 248 ptpiQ~~~i~~il~g----rdvll~a~TGsGKTla~llpil~~l~~ 289 (789)
+.|+|...+..++.. +-+|+.++.|.|||.. ...+...++.
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~-A~~~A~~llC 48 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRAL-AERLAAALLC 48 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHH-HHHHHHHHcC
Confidence 468888888887754 2478999999999975 4444555544
No 285
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.13 E-value=0.61 Score=51.04 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=24.2
Q ss_pred CceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEe
Q 003881 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 371 ~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~S 410 (789)
....+|||||+|.+... ....+..++...+...++|+.+
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEe
Confidence 45678999999987532 2334555666555555555443
No 286
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.10 E-value=1.6 Score=43.06 Aligned_cols=53 Identities=13% Similarity=0.270 Sum_probs=40.0
Q ss_pred cCceeEEEEeccchhccCCCh--HHHHHHHhhcCCCceEEEEeccCcHHHHHHHH
Q 003881 370 MSRVTYLVLDEADRMFDLGFE--PQIRSIVGQIRPDRQTLLFSATMPRKVEKLAR 422 (789)
Q Consensus 370 l~~i~~lVvDEah~m~~~~f~--~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~ 422 (789)
-..+++|||||+-..++.++. ..+..++...++...+|+..-.+|+.+.+++.
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 357899999999988887754 45667777767677777777778888766654
No 287
>PF13173 AAA_14: AAA domain
Probab=93.06 E-value=0.77 Score=42.77 Aligned_cols=38 Identities=21% Similarity=0.427 Sum_probs=25.8
Q ss_pred ceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEecc
Q 003881 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT 412 (789)
Q Consensus 372 ~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT 412 (789)
.-.+|||||+|++-+ +...+..+.... ++.++++.+..
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEccc
Confidence 456799999999865 466777776654 45566555444
No 288
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.98 E-value=0.27 Score=57.19 Aligned_cols=92 Identities=20% Similarity=0.264 Sum_probs=71.1
Q ss_pred CcccHHHHHHhcCCCC-CCCCEEEEecccccHHHHHHHHHHc-CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhh
Q 003881 453 DAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQK-GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530 (789)
Q Consensus 453 ~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~-g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~ 530 (789)
...|....+..+...+ .+.++||.+++..-+.++++.|++. +..+..+|++++..+|.++.....+|+.+|+|+|..+
T Consensus 7 GsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsa 86 (505)
T TIGR00595 7 GSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSA 86 (505)
T ss_pred CCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHH
Confidence 3455555444443333 3458999999999999999999764 6789999999999999999999999999999999654
Q ss_pred hccCCCCCccEEEEE
Q 003881 531 ARGLDIKSIKSVVNF 545 (789)
Q Consensus 531 ~rGlDI~~v~~VI~~ 545 (789)
- =+.+.++.+||.-
T Consensus 87 l-f~p~~~l~lIIVD 100 (505)
T TIGR00595 87 L-FLPFKNLGLIIVD 100 (505)
T ss_pred H-cCcccCCCEEEEE
Confidence 3 2467778888853
No 289
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=92.92 E-value=0.57 Score=62.81 Aligned_cols=63 Identities=27% Similarity=0.272 Sum_probs=44.1
Q ss_pred CCCcHHHHHHHHHHHcC--CCEEEEccCCChhhHHHH--HHHHHHHhcCccccccCCCeEEEEcCcHHHHHHH
Q 003881 246 EKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFV--LPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI 314 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~g--rdvll~a~TGsGKTla~l--lpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi 314 (789)
..+++.|.+++..++.+ +-+++.+..|+|||.... +-.+..++. ..+..++.++||-..+.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~------~~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFE------SEQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHH------hcCCeEEEEeChHHHHHHH
Confidence 47899999999999876 456778999999997521 022222222 2366788899997777554
No 290
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=92.92 E-value=0.72 Score=48.83 Aligned_cols=16 Identities=31% Similarity=0.416 Sum_probs=14.3
Q ss_pred CCEEEEccCCChhhHH
Q 003881 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll~a~TGsGKTla 278 (789)
.++++.+|+|+|||..
T Consensus 43 ~~vll~GppGtGKTtl 58 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTV 58 (261)
T ss_pred ceEEEEcCCCCCHHHH
Confidence 4789999999999975
No 291
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=92.87 E-value=0.31 Score=50.24 Aligned_cols=48 Identities=13% Similarity=0.268 Sum_probs=31.1
Q ss_pred cCceeEEEEeccchhccCC-ChHHHHHHHhhcC-CCceEEEEeccCcHHH
Q 003881 370 MSRVTYLVLDEADRMFDLG-FEPQIRSIVGQIR-PDRQTLLFSATMPRKV 417 (789)
Q Consensus 370 l~~i~~lVvDEah~m~~~~-f~~~i~~il~~l~-~~~q~ll~SAT~~~~i 417 (789)
+..+++||||.+|.+.... +...+..+++.+. ...++|+.|...|..+
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 4478899999999876532 3445556666653 4557777776766553
No 292
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=92.85 E-value=0.75 Score=50.10 Aligned_cols=141 Identities=18% Similarity=0.203 Sum_probs=70.9
Q ss_pred CCCcHHHHHHHHHHH----cCC---CEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHH
Q 003881 246 EKPTSIQCQALPIIL----SGR---DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLET 318 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il----~gr---dvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~ 318 (789)
..+.|+|..++..+. +++ -+|+.++.|.||+.. ...+...++...... .. .|+. +
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~l-A~~lA~~LlC~~~~~---~~----~c~~----------c 64 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAV-ALALAEHVLASGPDP---AA----AQRT----------R 64 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHH-HHHHHHHHhCCCCCC---CC----cchH----------H
Confidence 467888988887766 333 488999999999975 444555665432100 00 1221 1
Q ss_pred HHHhh--hcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHH
Q 003881 319 KKFAK--SHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSI 396 (789)
Q Consensus 319 ~~~~~--~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~i 396 (789)
+.+.. +.++.++...-..... +....|.|-..-.+...+.... .....+++|||+||.|... -.+.+.++
T Consensus 65 ~~~~~g~HPD~~~i~~~p~~~~~------k~~~~I~idqIR~l~~~~~~~p-~~g~~kV~iI~~ae~m~~~-AaNaLLKt 136 (319)
T PRK08769 65 QLIAAGTHPDLQLVSFIPNRTGD------KLRTEIVIEQVREISQKLALTP-QYGIAQVVIVDPADAINRA-ACNALLKT 136 (319)
T ss_pred HHHhcCCCCCEEEEecCCCcccc------cccccccHHHHHHHHHHHhhCc-ccCCcEEEEeccHhhhCHH-HHHHHHHH
Confidence 12221 1233332101100000 0001222222222223222221 2346789999999998543 24456667
Q ss_pred HhhcCCCceEEEEecc
Q 003881 397 VGQIRPDRQTLLFSAT 412 (789)
Q Consensus 397 l~~l~~~~q~ll~SAT 412 (789)
++.-+++..+|++|.-
T Consensus 137 LEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 137 LEEPSPGRYLWLISAQ 152 (319)
T ss_pred hhCCCCCCeEEEEECC
Confidence 7765666666666654
No 293
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=92.83 E-value=0.21 Score=46.14 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=13.4
Q ss_pred ceeEEEEeccchhccCC
Q 003881 372 RVTYLVLDEADRMFDLG 388 (789)
Q Consensus 372 ~i~~lVvDEah~m~~~~ 388 (789)
...+|+|||+|.+....
T Consensus 58 ~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 58 KPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp TSEEEEEETGGGTSHHC
T ss_pred cceeeeeccchhccccc
Confidence 35789999999887654
No 294
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=92.77 E-value=0.2 Score=58.97 Aligned_cols=127 Identities=17% Similarity=0.149 Sum_probs=72.7
Q ss_pred CCCcHHHHHHHHHHHcC--CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHH-HHHHHHh
Q 003881 246 EKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIY-LETKKFA 322 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~g--rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~-~~~~~~~ 322 (789)
...+|||.+.+..+... +.++++..+-+|||.+ ++.++.+.+.+. ...+|++.||.++|..+. ..+..+.
T Consensus 15 ~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~-~~n~~g~~i~~~------P~~~l~v~Pt~~~a~~~~~~rl~Pmi 87 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPSVREVVVMKSAQVGKTEL-LLNWIGYSIDQD------PGPMLYVQPTDDAAKDFSKERLDPMI 87 (557)
T ss_pred CCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHH-HHhhceEEEEeC------CCCEEEEEEcHHHHHHHHHHHHHHHH
Confidence 46789999999888754 6889999999999985 444444444432 223799999999999886 3444444
Q ss_pred hhcCCeEEEEEC---CCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhc
Q 003881 323 KSHGIRVSAVYG---GMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (789)
Q Consensus 323 ~~~~i~v~~~~g---g~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~ 385 (789)
.....--..+.. .........+...+..|.++.-.. -..+.-..+.+|++||.|.+-
T Consensus 88 ~~sp~l~~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~S------~~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 88 RASPVLRRKLSPSKSRDSGNTILYKRFPGGFLYLVGANS------PSNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred HhCHHHHHHhCchhhcccCCchhheecCCCEEEEEeCCC------CcccccCCcCEEEEechhhcc
Confidence 322110011111 000001111112234444443111 112233467899999999874
No 295
>PLN03025 replication factor C subunit; Provisional
Probab=92.72 E-value=0.98 Score=49.33 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=23.8
Q ss_pred CceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEecc
Q 003881 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT 412 (789)
Q Consensus 371 ~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT 412 (789)
....+|||||+|.|.... ...+..++...+....+++ +++
T Consensus 98 ~~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~il-~~n 137 (319)
T PLN03025 98 GRHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFAL-ACN 137 (319)
T ss_pred CCeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEEE-EeC
Confidence 357899999999975432 3344555555444444444 444
No 296
>PRK04195 replication factor C large subunit; Provisional
Probab=92.70 E-value=0.82 Score=53.00 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=14.9
Q ss_pred CCCEEEEccCCChhhHH
Q 003881 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvll~a~TGsGKTla 278 (789)
.+.+|+.||+|+|||..
T Consensus 39 ~~~lLL~GppG~GKTtl 55 (482)
T PRK04195 39 KKALLLYGPPGVGKTSL 55 (482)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46799999999999975
No 297
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=92.70 E-value=0.69 Score=55.38 Aligned_cols=52 Identities=25% Similarity=0.401 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHHHHhhcCCcceEE--eehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhc
Q 003881 502 GDKDQASRMEILQKFKSGVYHVLI--ATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRT 561 (789)
Q Consensus 502 g~~~~~eR~~~l~~F~~G~~~VLV--aT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~ 561 (789)
|..+...-..+++.+.+++..-++ +..+..+|+|+.. +...+..++|++=..
T Consensus 242 G~~d~~~i~~ll~aL~~~d~~~~l~~~~~l~~~g~~~~~--------~l~dLl~~l~~~~~~ 295 (830)
T PRK07003 242 GALDQTYMVRLLDALAAGDGPEILAVADEMALRSLSFST--------ALQDLASLLHRIAWA 295 (830)
T ss_pred CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHH--------HHHHHHHHHHHHHHH
Confidence 667777777888888887765433 3466677877632 123455566666443
No 298
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=92.67 E-value=1.4 Score=49.93 Aligned_cols=132 Identities=16% Similarity=0.200 Sum_probs=67.0
Q ss_pred CEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEE-c-CcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHH
Q 003881 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC-A-PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (789)
Q Consensus 264 dvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl-~-PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~ 341 (789)
-+++++++|+|||.... -|++.+.. .+.+++++ + |.|.-|.++ ++.++...++.+...+.+......
T Consensus 102 vi~lvG~~GvGKTTtaa--KLA~~l~~------~G~kV~lV~~D~~R~aA~eQ---Lk~~a~~~~vp~~~~~~~~dp~~i 170 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCT--KLAYYYQR------KGFKPCLVCADTFRAGAFDQ---LKQNATKARIPFYGSYTESDPVKI 170 (429)
T ss_pred EEEEECCCCCCHHHHHH--HHHHHHHH------CCCCEEEEcCcccchhHHHH---HHHHhhccCCeEEeecCCCCHHHH
Confidence 46789999999997533 22222321 23344444 3 335444433 444554445555443333221111
Q ss_pred HHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccC-CChHHHHHHHhhcCCCceEEEEeccCcHHHHHH
Q 003881 342 FKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKL 420 (789)
Q Consensus 342 ~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~-~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l 420 (789)
.. +.+.. ..-..+++||||=+-++... .....+..+...+.++.-++.++||........
T Consensus 171 ~~-----------------~~l~~--~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~ 231 (429)
T TIGR01425 171 AS-----------------EGVEK--FKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ 231 (429)
T ss_pred HH-----------------HHHHH--HHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH
Confidence 00 01110 00134567777777653321 123344455555566667888888877666666
Q ss_pred HHHHh
Q 003881 421 AREIL 425 (789)
Q Consensus 421 ~~~~l 425 (789)
+..|.
T Consensus 232 a~~F~ 236 (429)
T TIGR01425 232 AKAFK 236 (429)
T ss_pred HHHHH
Confidence 66663
No 299
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=92.59 E-value=0.054 Score=53.59 Aligned_cols=124 Identities=20% Similarity=0.242 Sum_probs=52.4
Q ss_pred EEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHH
Q 003881 266 IGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL 345 (789)
Q Consensus 266 ll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l 345 (789)
++.|+-|-||+.+.-+. +..++.. ....++|.+|+.+-++.+.+.+.+-+...+++....... .......
T Consensus 1 VltA~RGRGKSa~lGl~-~a~l~~~------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~---~~~~~~~ 70 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLA-AAALIQK------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRI---GQIIKLR 70 (177)
T ss_dssp -EEE-TTSSHHHHHHHC-CCCSSS-----------EEEE-SS--S-HHHHHCC---------------------------
T ss_pred CccCCCCCCHHHHHHHH-HHHHHHh------cCceEEEecCCHHHHHHHHHHHHhhcccccccccccccc---ccccccc
Confidence 57899999999763332 2222221 224689999999988888777766655444443000000 0000011
Q ss_pred hcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEeccCc
Q 003881 346 KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (789)
Q Consensus 346 ~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~ 414 (789)
.....|-+..|..+.... ...++||||||=.+- .+.+..++...+ .++||.|+.
T Consensus 71 ~~~~~i~f~~Pd~l~~~~-------~~~DlliVDEAAaIp----~p~L~~ll~~~~----~vv~stTi~ 124 (177)
T PF05127_consen 71 FNKQRIEFVAPDELLAEK-------PQADLLIVDEAAAIP----LPLLKQLLRRFP----RVVFSTTIH 124 (177)
T ss_dssp --CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCCSS----EEEEEEEBS
T ss_pred cccceEEEECCHHHHhCc-------CCCCEEEEechhcCC----HHHHHHHHhhCC----EEEEEeecc
Confidence 124667777776654321 234789999998743 445556654332 577888863
No 300
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.56 E-value=0.53 Score=57.31 Aligned_cols=44 Identities=18% Similarity=0.180 Sum_probs=25.7
Q ss_pred CceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHH
Q 003881 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRK 416 (789)
Q Consensus 371 ~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~ 416 (789)
.++.++||||||+|.... ...+.+++..-+....+|+. .|-+..
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFILa-TTe~~k 161 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLLA-TTDPQK 161 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEEE-CCCchh
Confidence 467899999999975332 23444555554444544443 444333
No 301
>PRK13342 recombination factor protein RarA; Reviewed
Probab=92.53 E-value=0.79 Score=52.01 Aligned_cols=38 Identities=29% Similarity=0.384 Sum_probs=22.7
Q ss_pred ceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEeccCc
Q 003881 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (789)
Q Consensus 372 ~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~ 414 (789)
...+|||||+|++.. .+...++..+. ..+++++.+|..
T Consensus 92 ~~~vL~IDEi~~l~~----~~q~~LL~~le-~~~iilI~att~ 129 (413)
T PRK13342 92 RRTILFIDEIHRFNK----AQQDALLPHVE-DGTITLIGATTE 129 (413)
T ss_pred CceEEEEechhhhCH----HHHHHHHHHhh-cCcEEEEEeCCC
Confidence 456899999998642 23334444443 345666666643
No 302
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=92.52 E-value=0.26 Score=61.11 Aligned_cols=98 Identities=14% Similarity=0.193 Sum_probs=74.7
Q ss_pred EEecCCCcccHHHHH-HhcCCCCCCCCEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCc
Q 003881 447 VHVIPSDAEKLPWLL-EKLPGMIDDGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVY 521 (789)
Q Consensus 447 ~~~~~~~~~k~~~L~-~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~ 521 (789)
+...+....|....+ ..+.......+++|.+||..-|.+.++.|++. ++.+..++|..+..++..+++.+++|+.
T Consensus 476 Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~ 555 (926)
T TIGR00580 476 LVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKI 555 (926)
T ss_pred EEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCc
Confidence 444455566654332 22222234568999999999999988877653 6788899999999999999999999999
Q ss_pred ceEEeeh-hhhccCCCCCccEEEE
Q 003881 522 HVLIATD-VAARGLDIKSIKSVVN 544 (789)
Q Consensus 522 ~VLVaT~-v~~rGlDI~~v~~VI~ 544 (789)
+|+|+|. .+...+.+.++.+||.
T Consensus 556 dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 556 DILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred eEEEchHHHhhCCCCcccCCEEEe
Confidence 9999996 4556788888988885
No 303
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=92.49 E-value=0.51 Score=50.59 Aligned_cols=17 Identities=41% Similarity=0.513 Sum_probs=14.4
Q ss_pred CCCEEEEccCCChhhHH
Q 003881 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvll~a~TGsGKTla 278 (789)
++.++++++||+|||..
T Consensus 194 ~~vi~~vGptGvGKTTt 210 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTT 210 (282)
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45688899999999976
No 304
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.39 E-value=2.4 Score=47.09 Aligned_cols=131 Identities=22% Similarity=0.316 Sum_probs=62.3
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCc-HHH-HHHHHHHHHHHhhhcCCeEEEEECCCCh
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT-REL-AHQIYLETKKFAKSHGIRVSAVYGGMSK 338 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~Pt-reL-a~Qi~~~~~~~~~~~~i~v~~~~gg~~~ 338 (789)
.++.+++++++|+|||....-.+ .++..+ ....++|-+-+ |.- +.| ++.++...++.+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA-~~l~~~------g~~V~lItaDtyR~gAveQ----Lk~yae~lgvpv~-------- 265 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLG-WQLLKQ------NRTVGFITTDTFRSGAVEQ----FQGYADKLDVELI-------- 265 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH-HHHHHc------CCeEEEEeCCccCccHHHH----HHHHhhcCCCCEE--------
Confidence 35678899999999997633322 222221 12233444433 322 223 4444443344322
Q ss_pred HHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccC-CChHHHHHHHhhcCCCceEEEEeccCc-HH
Q 003881 339 LDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMP-RK 416 (789)
Q Consensus 339 ~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~-~f~~~i~~il~~l~~~~q~ll~SAT~~-~~ 416 (789)
++.+|..|...+.... ....+++|+||=+=+.... .....+..++..+.++.-++.+||+.. ..
T Consensus 266 -------------~~~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d 331 (407)
T PRK12726 266 -------------VATSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSAD 331 (407)
T ss_pred -------------ecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHHH
Confidence 1234555544443211 1235677888877653311 122333444444444444566777643 34
Q ss_pred HHHHHHHH
Q 003881 417 VEKLAREI 424 (789)
Q Consensus 417 i~~l~~~~ 424 (789)
+...+..|
T Consensus 332 ~~~i~~~f 339 (407)
T PRK12726 332 VMTILPKL 339 (407)
T ss_pred HHHHHHhc
Confidence 44444443
No 305
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=92.34 E-value=0.92 Score=45.29 Aligned_cols=88 Identities=19% Similarity=0.126 Sum_probs=53.5
Q ss_pred CEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHH
Q 003881 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK 343 (789)
Q Consensus 264 dvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~ 343 (789)
=.+++++|.||||...+--+-++. ..+.+++|..|-..- . ++...+...-|...
T Consensus 6 l~~i~gpM~SGKT~eLl~r~~~~~--------~~g~~v~vfkp~iD~----------R---~~~~~V~Sr~G~~~----- 59 (201)
T COG1435 6 LEFIYGPMFSGKTEELLRRARRYK--------EAGMKVLVFKPAIDT----------R---YGVGKVSSRIGLSS----- 59 (201)
T ss_pred EEEEEccCcCcchHHHHHHHHHHH--------HcCCeEEEEeccccc----------c---cccceeeeccCCcc-----
Confidence 357899999999986333322222 235668888885321 1 13333434444333
Q ss_pred HHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccch
Q 003881 344 ELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (789)
Q Consensus 344 ~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~ 383 (789)
..++|-.+..+.+.+....... .++.|.||||+-
T Consensus 60 -----~A~~i~~~~~i~~~i~~~~~~~-~~~~v~IDEaQF 93 (201)
T COG1435 60 -----EAVVIPSDTDIFDEIAALHEKP-PVDCVLIDEAQF 93 (201)
T ss_pred -----cceecCChHHHHHHHHhcccCC-CcCEEEEehhHh
Confidence 3466777777877776543322 288999999996
No 306
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=92.30 E-value=1.1 Score=48.48 Aligned_cols=40 Identities=13% Similarity=0.221 Sum_probs=24.4
Q ss_pred cCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEe
Q 003881 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 370 l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~S 410 (789)
.....+|||||||.|... -...+...+..-+.+..+++.+
T Consensus 107 ~~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 107 EGGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred CCCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEc
Confidence 367899999999987652 2334445555444444444444
No 307
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=92.29 E-value=3.1 Score=41.09 Aligned_cols=138 Identities=17% Similarity=0.152 Sum_probs=63.6
Q ss_pred EEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHH
Q 003881 265 IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE 344 (789)
Q Consensus 265 vll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~ 344 (789)
+.+....|-|||.+++=-++..+ ..+.+|+|+-=.+-- --.-++..+....++.+.. .|.........
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~--------G~G~rV~ivQFlKg~--~~~GE~~~l~~l~~~~~~~--~g~~f~~~~~~ 73 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAA--------GHGMRVLIVQFLKGG--RYSGELKALKKLPNVEIER--FGKGFVWRMNE 73 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHH--------CTT--EEEEESS--S--S--HHHHHHGGGT--EEEE----TT----GGG
T ss_pred EEEEeCCCCCchHHHHHHHHHHH--------hCCCEEEEEEEecCC--CCcCHHHHHHhCCeEEEEE--cCCcccccCCC
Confidence 44556688899998887777765 567788887433220 0112222222211233221 12111000000
Q ss_pred HhcCCcEEEeChHHHHHHHhh--cccccCceeEEEEeccchhccCCCh--HHHHHHHhhcCCCceEEEEeccCcHHHHHH
Q 003881 345 LKAGCEIVIATPGRLIDMLKM--KALTMSRVTYLVLDEADRMFDLGFE--PQIRSIVGQIRPDRQTLLFSATMPRKVEKL 420 (789)
Q Consensus 345 l~~~~dIiV~Tp~~L~~~l~~--~~~~l~~i~~lVvDEah~m~~~~f~--~~i~~il~~l~~~~q~ll~SAT~~~~i~~l 420 (789)
-. .+ .......++. ..+.-..+++|||||+-..++.++. ..+..++...+....+|+..-.+|+.+.+.
T Consensus 74 ~~--~~-----~~~~~~~~~~a~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~ 146 (172)
T PF02572_consen 74 EE--ED-----RAAAREGLEEAKEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEA 146 (172)
T ss_dssp HH--HH-----HHHHHHHHHHHHHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH
T ss_pred cH--HH-----HHHHHHHHHHHHHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHh
Confidence 00 00 1111122211 2223457899999999988888765 456677777666777777777788777665
Q ss_pred H
Q 003881 421 A 421 (789)
Q Consensus 421 ~ 421 (789)
+
T Consensus 147 A 147 (172)
T PF02572_consen 147 A 147 (172)
T ss_dssp -
T ss_pred C
Confidence 5
No 308
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=92.23 E-value=2.8 Score=46.72 Aligned_cols=16 Identities=50% Similarity=0.638 Sum_probs=14.4
Q ss_pred CCEEEEccCCChhhHH
Q 003881 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll~a~TGsGKTla 278 (789)
.++++.++||+|||++
T Consensus 43 ~n~~iyG~~GTGKT~~ 58 (366)
T COG1474 43 SNIIIYGPTGTGKTAT 58 (366)
T ss_pred ccEEEECCCCCCHhHH
Confidence 4799999999999986
No 309
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=92.22 E-value=0.53 Score=47.14 Aligned_cols=146 Identities=15% Similarity=0.092 Sum_probs=76.3
Q ss_pred HcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCCh-
Q 003881 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSK- 338 (789)
Q Consensus 260 l~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~- 338 (789)
+....+++...+|.|||.+++--++..+ ..|.+|+|+-=.+--. -.-+...+....++... ..|...
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~--------g~G~~V~ivQFlKg~~--~~GE~~~l~~l~~v~~~--~~g~~~~ 87 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAV--------GHGKKVGVVQFIKGAW--STGERNLLEFGGGVEFH--VMGTGFT 87 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHH--------HCCCeEEEEEEecCCC--ccCHHHHHhcCCCcEEE--ECCCCCc
Confidence 3456889999999999998776666665 4466777762111100 01111212111123322 222211
Q ss_pred HHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCCh--HHHHHHHhhcCCCceEEEEeccCcHH
Q 003881 339 LDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFE--PQIRSIVGQIRPDRQTLLFSATMPRK 416 (789)
Q Consensus 339 ~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~--~~i~~il~~l~~~~q~ll~SAT~~~~ 416 (789)
... ...+--+......+.... ..+.-..+++|||||+-..++.++. ..+..++...++...+|+..-.+|+.
T Consensus 88 ~~~-----~~~~e~~~~~~~~~~~a~-~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~ 161 (191)
T PRK05986 88 WET-----QDRERDIAAAREGWEEAK-RMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRE 161 (191)
T ss_pred ccC-----CCcHHHHHHHHHHHHHHH-HHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHH
Confidence 000 000000001111112111 1222356899999999998888754 45667777666666666666668887
Q ss_pred HHHHHHH
Q 003881 417 VEKLARE 423 (789)
Q Consensus 417 i~~l~~~ 423 (789)
+.+++..
T Consensus 162 Lie~ADl 168 (191)
T PRK05986 162 LIEAADL 168 (191)
T ss_pred HHHhCch
Confidence 7666543
No 310
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.07 E-value=0.42 Score=50.73 Aligned_cols=118 Identities=15% Similarity=0.161 Sum_probs=56.0
Q ss_pred HcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChH
Q 003881 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (789)
Q Consensus 260 l~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~ 339 (789)
..|.-+++.|++|+|||.. ++.++.++..+ .+..++++.- -+-..++...+........+......-... .
T Consensus 28 ~~g~~~~i~g~~G~GKT~l-~~~~~~~~~~~------~g~~vl~iS~-E~~~~~~~~r~~~~~~~~~~~~~~~~~~~~-~ 98 (271)
T cd01122 28 RKGELIILTAGTGVGKTTF-LREYALDLITQ------HGVRVGTISL-EEPVVRTARRLLGQYAGKRLHLPDTVFIYT-L 98 (271)
T ss_pred cCCcEEEEEcCCCCCHHHH-HHHHHHHHHHh------cCceEEEEEc-ccCHHHHHHHHHHHHhCCCcccCCcccccc-H
Confidence 4567789999999999974 34344443221 2455777643 223334444443332211221100000111 1
Q ss_pred HHH----HHHhcCCcEEE-e-----ChHHHHHHHhhcccccCceeEEEEeccchhccC
Q 003881 340 DQF----KELKAGCEIVI-A-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL 387 (789)
Q Consensus 340 ~~~----~~l~~~~dIiV-~-----Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~ 387 (789)
+.+ ..+.....+++ - |...+...+..... -..+++||||..+.+...
T Consensus 99 ~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~~-~~~~~~vvID~l~~l~~~ 155 (271)
T cd01122 99 EEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAV-SHGIQHIIIDNLSIMVSD 155 (271)
T ss_pred HHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHHh-cCCceEEEECCHHHHhcc
Confidence 111 22221122222 1 45555555543221 236789999999987643
No 311
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=92.01 E-value=0.92 Score=52.49 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=15.0
Q ss_pred CCCEEEEccCCChhhHH
Q 003881 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvll~a~TGsGKTla 278 (789)
.+.+|+.+|+|+|||+.
T Consensus 216 p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CcceEEECCCCCcHHHH
Confidence 46799999999999974
No 312
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.93 E-value=0.86 Score=52.50 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=26.5
Q ss_pred cCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHH
Q 003881 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRK 416 (789)
Q Consensus 370 l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~ 416 (789)
..+.+++||||+|.|....+ +.+.+.+...++...+|+ .+|-+..
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~fIl-atte~~K 158 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKFIL-ATTEVKK 158 (491)
T ss_pred cCCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEEEE-EeCChHH
Confidence 45789999999998765332 244555555444444444 4453333
No 313
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=91.92 E-value=1.2 Score=51.37 Aligned_cols=88 Identities=19% Similarity=0.206 Sum_probs=54.7
Q ss_pred CCCHH-HHHHHHHcCCCCCc----HHHHHHHHHHHcC--CCEEEEccCCChhhHHHHHHHHHHHh-cCccccccCCCeEE
Q 003881 231 GFSTQ-LMHAISKQGYEKPT----SIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIM-DQPELQKEEGPIGV 302 (789)
Q Consensus 231 ~l~~~-l~~~l~~~g~~~pt----piQ~~~i~~il~g--rdvll~a~TGsGKTla~llpil~~l~-~~~~~~~~~gp~vL 302 (789)
++.++ |...|.++--.+++ -||.+==.+|..- +-+++.+..|||||.+++ +=+++++ ..+... ..+| +|
T Consensus 188 ~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiAL-HRvAyLlY~~R~~l-~~k~-vl 264 (747)
T COG3973 188 GGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIAL-HRVAYLLYGYRGPL-QAKP-VL 264 (747)
T ss_pred chHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHH-HHHHHHHhcccccc-ccCc-eE
Confidence 45554 45566665545554 3555555555544 457888999999998744 4445544 333222 1223 89
Q ss_pred EEcCcHHHHHHHHHHHHHH
Q 003881 303 ICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 303 Il~PtreLa~Qi~~~~~~~ 321 (789)
|+.|.+.++.-+...+-.+
T Consensus 265 vl~PN~vFleYis~VLPeL 283 (747)
T COG3973 265 VLGPNRVFLEYISRVLPEL 283 (747)
T ss_pred EEcCcHHHHHHHHHhchhh
Confidence 9999999987666655555
No 314
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.91 E-value=0.47 Score=56.03 Aligned_cols=42 Identities=14% Similarity=0.166 Sum_probs=25.8
Q ss_pred CceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEeccCc
Q 003881 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (789)
Q Consensus 371 ~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~ 414 (789)
.+++++||||+|+|.... ...+.+++...+....+|+ .+|-+
T Consensus 117 gk~KV~IIDEVh~LS~~A-~NALLKtLEEPP~~v~FIL-aTtd~ 158 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS-FNALLKTLEEPPEHVKFLF-ATTDP 158 (702)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhcCCCCcEEEE-EECCh
Confidence 467899999999875443 3345556665554454444 44533
No 315
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=91.91 E-value=0.44 Score=51.95 Aligned_cols=65 Identities=25% Similarity=0.206 Sum_probs=42.1
Q ss_pred HHHHcCCCCCcHHHHHHHHHHH-cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHH
Q 003881 239 AISKQGYEKPTSIQCQALPIIL-SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (789)
Q Consensus 239 ~l~~~g~~~ptpiQ~~~i~~il-~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa 311 (789)
.+.+.|. +++.|.+.|..+. .+.++|++++||||||.. +-.++..+...+ ..-+++++=.+.||.
T Consensus 122 ~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~-----~~~rivtiEd~~El~ 187 (323)
T PRK13833 122 DYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASA-----PEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCC-----CCceEEEecCCcccc
Confidence 3444443 5677777776655 557999999999999974 455555553322 123567777777764
No 316
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=91.88 E-value=2.1 Score=45.17 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=22.0
Q ss_pred CCcHHHHHHHHHHH----cCC-CEEEEccCCChhhHH
Q 003881 247 KPTSIQCQALPIIL----SGR-DIIGIAKTGSGKTAA 278 (789)
Q Consensus 247 ~ptpiQ~~~i~~il----~gr-dvll~a~TGsGKTla 278 (789)
-+++.+.+++..+. .+. .+++++++|+|||..
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl 59 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTL 59 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 35556666665543 223 578899999999975
No 317
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=91.87 E-value=0.77 Score=53.93 Aligned_cols=137 Identities=19% Similarity=0.220 Sum_probs=82.4
Q ss_pred HHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhc--CCeEEEEECCC
Q 003881 259 ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH--GIRVSAVYGGM 336 (789)
Q Consensus 259 il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~--~i~v~~~~gg~ 336 (789)
.+..+-.++..|==.|||.. +.+++..++.. -.|-++++++|.+..+..+++++..++... .-.+..+.| .
T Consensus 251 ~fkqk~tVflVPRR~GKTwi-vv~iI~~ll~s-----~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e 323 (738)
T PHA03368 251 HFRQRATVFLVPRRHGKTWF-LVPLIALALAT-----FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-E 323 (738)
T ss_pred HhhccceEEEecccCCchhh-HHHHHHHHHHh-----CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-c
Confidence 34556678888888999975 44666655432 136779999999999999999999876632 111212222 1
Q ss_pred ChHHHHHHHhcC--CcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhc-CCCceEEEEeccC
Q 003881 337 SKLDQFKELKAG--CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPDRQTLLFSATM 413 (789)
Q Consensus 337 ~~~~~~~~l~~~--~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l-~~~~q~ll~SAT~ 413 (789)
.. ...+..+ .-|.++|- -..+...=..+++||||||+-+.+. .+..++-.+ ..+.++|++|.|-
T Consensus 324 ~I---~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~----al~~ilp~l~~~n~k~I~ISS~N 390 (738)
T PHA03368 324 TI---SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPD----AVQTIMGFLNQTNCKIIFVSSTN 390 (738)
T ss_pred EE---EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHH----HHHHHHHHHhccCccEEEEecCC
Confidence 11 0111222 24555531 1112233346899999999987653 333333222 2478999999885
Q ss_pred cH
Q 003881 414 PR 415 (789)
Q Consensus 414 ~~ 415 (789)
..
T Consensus 391 s~ 392 (738)
T PHA03368 391 TG 392 (738)
T ss_pred CC
Confidence 43
No 318
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=91.75 E-value=1.8 Score=51.65 Aligned_cols=41 Identities=15% Similarity=0.095 Sum_probs=24.2
Q ss_pred CceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEeccC
Q 003881 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (789)
Q Consensus 371 ~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~ 413 (789)
.+++++||||+|+|.... .+.+.+++..-+....+|+. .|-
T Consensus 118 g~~KV~IIDEah~Ls~~a-~NALLKtLEEPp~~v~FIL~-Tt~ 158 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLA-TTD 158 (647)
T ss_pred CCCEEEEEechHhCCHHH-HHHHHHHHHcCCCCeEEEEe-cCC
Confidence 468899999999876543 23444455553444444443 443
No 319
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=91.69 E-value=1.1 Score=52.06 Aligned_cols=18 Identities=22% Similarity=0.182 Sum_probs=14.9
Q ss_pred CCEEEEccCCChhhHHHH
Q 003881 263 RDIIGIAKTGSGKTAAFV 280 (789)
Q Consensus 263 rdvll~a~TGsGKTla~l 280 (789)
+.+|++++.|+|||.++.
T Consensus 44 ~a~Lf~Gp~G~GKTT~Ar 61 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSAR 61 (507)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 368999999999997633
No 320
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=91.59 E-value=0.77 Score=51.38 Aligned_cols=49 Identities=14% Similarity=0.254 Sum_probs=35.7
Q ss_pred ceeEEEEeccchhccC-CChHHHHHHHhhcCCC-ceEEEEeccCcHHHHHH
Q 003881 372 RVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPD-RQTLLFSATMPRKVEKL 420 (789)
Q Consensus 372 ~i~~lVvDEah~m~~~-~f~~~i~~il~~l~~~-~q~ll~SAT~~~~i~~l 420 (789)
.+++|+||.++.+... .....+..+++.+... .|+|+.|..+|..+..+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~ 225 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGL 225 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccc
Confidence 7788999999987665 3566677777777644 47777777788776533
No 321
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=91.52 E-value=1.2 Score=54.11 Aligned_cols=47 Identities=19% Similarity=0.252 Sum_probs=27.2
Q ss_pred ceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHH
Q 003881 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLARE 423 (789)
Q Consensus 372 ~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~ 423 (789)
...+|||||+|++.. .+...++..+ ...+++++++|-++....+...
T Consensus 109 ~~~IL~IDEIh~Ln~----~qQdaLL~~l-E~g~IiLI~aTTenp~~~l~~a 155 (725)
T PRK13341 109 KRTILFIDEVHRFNK----AQQDALLPWV-ENGTITLIGATTENPYFEVNKA 155 (725)
T ss_pred CceEEEEeChhhCCH----HHHHHHHHHh-cCceEEEEEecCCChHhhhhhH
Confidence 456899999998542 2223333333 3456788888765443333333
No 322
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.50 E-value=1.7 Score=49.39 Aligned_cols=57 Identities=19% Similarity=0.278 Sum_probs=33.5
Q ss_pred CCCCCCCCcccCC---CCHHHHHHHHHcC---CCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHH
Q 003881 219 DVPRPVKTFEDCG---FSTQLMHAISKQG---YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 219 ~~P~pi~sf~~~~---l~~~l~~~l~~~g---~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla 278 (789)
.+-.|--.|+++| |+.+.-+.+.+.- ...|--+-+-.++ .-+.+|+.+|+|+|||+.
T Consensus 210 ~ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~---HVKGiLLyGPPGTGKTLi 272 (744)
T KOG0741|consen 210 SIINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIK---HVKGILLYGPPGTGKTLI 272 (744)
T ss_pred cccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCcc---ceeeEEEECCCCCChhHH
Confidence 3445667788884 6676655554431 1112222222222 226799999999999975
No 323
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=91.50 E-value=1.1 Score=49.60 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=18.2
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHH
Q 003881 263 RDIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 263 rdvll~a~TGsGKTla~llpil~~l 287 (789)
.++++.+++|+|||.+ +-.++.++
T Consensus 41 ~~i~I~G~~GtGKT~l-~~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAV-TKYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHH
Confidence 5799999999999975 44444544
No 324
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=91.38 E-value=3.1 Score=40.78 Aligned_cols=55 Identities=18% Similarity=0.312 Sum_probs=31.0
Q ss_pred CceeEEEEeccchhc-cCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHh
Q 003881 371 SRVTYLVLDEADRMF-DLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREIL 425 (789)
Q Consensus 371 ~~i~~lVvDEah~m~-~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l 425 (789)
...++||+|....+. +......+..+.....+..-++.+++.........+..+.
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~~ 136 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAFN 136 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHH
Confidence 356678899888643 2122333444444444566677777776555555555543
No 325
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=91.31 E-value=1.8 Score=44.96 Aligned_cols=52 Identities=10% Similarity=0.093 Sum_probs=31.8
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHH
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~ 321 (789)
.+.-+++.+++|+|||+. ++-++..+++ .+.++++++. .+-..++.+.+..+
T Consensus 23 ~g~~~~i~G~~G~GKTtl-~~~~~~~~~~-------~g~~~~yi~~-e~~~~~~~~~~~~~ 74 (230)
T PRK08533 23 AGSLILIEGDESTGKSIL-SQRLAYGFLQ-------NGYSVSYVST-QLTTTEFIKQMMSL 74 (230)
T ss_pred CCcEEEEECCCCCCHHHH-HHHHHHHHHh-------CCCcEEEEeC-CCCHHHHHHHHHHh
Confidence 456789999999999975 3334444433 2455777774 33444555555443
No 326
>PRK14873 primosome assembly protein PriA; Provisional
Probab=91.19 E-value=0.6 Score=55.92 Aligned_cols=92 Identities=20% Similarity=0.201 Sum_probs=75.5
Q ss_pred cccHHHHHHhcCCCCC-CCCEEEEecccccHHHHHHHHHHc-C-CceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhh
Q 003881 454 AEKLPWLLEKLPGMID-DGDVLVFASKKTTVDEIESQLAQK-G-FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530 (789)
Q Consensus 454 ~~k~~~L~~~L~~~~~-~~kvLVF~~s~~~a~~l~~~L~~~-g-~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~ 530 (789)
+.|...++.++.+.+. +.++||.++....+..+...|+.. + ..+..+|++++..+|.+......+|+.+|+|.|..+
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 4677777777766554 448999999999999999999865 3 679999999999999999999999999999999654
Q ss_pred hccCCCCCccEEEEEc
Q 003881 531 ARGLDIKSIKSVVNFD 546 (789)
Q Consensus 531 ~rGlDI~~v~~VI~~d 546 (789)
- =+-++++..||..+
T Consensus 251 v-FaP~~~LgLIIvdE 265 (665)
T PRK14873 251 V-FAPVEDLGLVAIWD 265 (665)
T ss_pred E-EeccCCCCEEEEEc
Confidence 3 35667777777644
No 327
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=91.10 E-value=1.7 Score=43.13 Aligned_cols=54 Identities=13% Similarity=0.282 Sum_probs=39.7
Q ss_pred CceeEEEEeccchhccCCCh--HHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHH
Q 003881 371 SRVTYLVLDEADRMFDLGFE--PQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREI 424 (789)
Q Consensus 371 ~~i~~lVvDEah~m~~~~f~--~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~ 424 (789)
..+++||+||.-..+..++. ..+..++..-|.+..+|+..-..|+.+.+++...
T Consensus 121 ~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADlV 176 (198)
T COG2109 121 GKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADLV 176 (198)
T ss_pred CCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHH
Confidence 36899999999988887755 4566777766666666666666888887776653
No 328
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=91.07 E-value=0.15 Score=50.52 Aligned_cols=45 Identities=29% Similarity=0.317 Sum_probs=31.0
Q ss_pred HHHHhcCCcEEEeChHHHHHHHhhcccc--cCceeEEEEeccchhcc
Q 003881 342 FKELKAGCEIVIATPGRLIDMLKMKALT--MSRVTYLVLDEADRMFD 386 (789)
Q Consensus 342 ~~~l~~~~dIiV~Tp~~L~~~l~~~~~~--l~~i~~lVvDEah~m~~ 386 (789)
.+.....++|||+++..|++-.....+. ...-.+|||||||.|.+
T Consensus 113 ~r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 113 ARELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HHHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 3445567999999999988755443332 23457899999999765
No 329
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=90.99 E-value=1.5 Score=48.57 Aligned_cols=40 Identities=18% Similarity=0.138 Sum_probs=25.8
Q ss_pred cCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEe
Q 003881 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 370 l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~S 410 (789)
...+.+|||||||.|-... .+.+.++++..+....+|++|
T Consensus 139 ~g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILIS 178 (351)
T ss_pred cCCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 3567899999999975432 344666666644455555554
No 330
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=90.98 E-value=0.8 Score=49.61 Aligned_cols=51 Identities=24% Similarity=0.245 Sum_probs=28.5
Q ss_pred cCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHh
Q 003881 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREIL 425 (789)
Q Consensus 370 l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l 425 (789)
..+-.+|.+||+|+ |......++--.-.+--++++.||--+.-..+...++
T Consensus 220 ~krkTilFiDEiHR-----FNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLl 270 (554)
T KOG2028|consen 220 TKRKTILFIDEIHR-----FNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALL 270 (554)
T ss_pred hcceeEEEeHHhhh-----hhhhhhhcccceeccCceEEEecccCCCccchhHHHH
Confidence 34556799999999 4444333332222344577888885443333443333
No 331
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=90.94 E-value=0.59 Score=50.99 Aligned_cols=67 Identities=28% Similarity=0.304 Sum_probs=43.0
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHH-HcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHH
Q 003881 237 MHAISKQGYEKPTSIQCQALPII-LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (789)
Q Consensus 237 ~~~l~~~g~~~ptpiQ~~~i~~i-l~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa 311 (789)
++.|.+.|+ +++.|.+.+..+ ..+++++++++||||||. ++-.++.++...+ ...++++|-.+.||.
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~~~-----~~~rivtIEd~~El~ 191 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEMVIQD-----PTERVFIIEDTGEIQ 191 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhhhhcC-----CCceEEEEcCCCccc
Confidence 344444444 456777777654 466899999999999995 3555555543221 234577777777763
No 332
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.88 E-value=1.6 Score=51.74 Aligned_cols=44 Identities=16% Similarity=0.235 Sum_probs=26.2
Q ss_pred cCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEeccCcH
Q 003881 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPR 415 (789)
Q Consensus 370 l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~ 415 (789)
..+++++||||+|+|.... .+.+.+++...++...+|+ .+|-+.
T Consensus 117 ~~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl-~t~~~~ 160 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIF-ATTEPH 160 (576)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEE-EeCChh
Confidence 4578899999999875432 2345555555444444444 445433
No 333
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=90.88 E-value=0.36 Score=52.20 Aligned_cols=60 Identities=22% Similarity=0.151 Sum_probs=42.8
Q ss_pred CCCCCcHHHHHHHHHHHcCC-CEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHH
Q 003881 244 GYEKPTSIQCQALPIILSGR-DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAH 312 (789)
Q Consensus 244 g~~~ptpiQ~~~i~~il~gr-dvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~ 312 (789)
.|...++-|...+-.+...+ ++|+++.||||||.. +-+++.++ ...-++|.+--|.||--
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-LNal~~~i--------~~~eRvItiEDtaELql 214 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-LNALSGFI--------DSDERVITIEDTAELQL 214 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-HHHHHhcC--------CCcccEEEEeehhhhcc
Confidence 46788899999998888776 999999999999974 22222222 11226788888877743
No 334
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=90.87 E-value=0.66 Score=48.33 Aligned_cols=51 Identities=18% Similarity=0.169 Sum_probs=33.6
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHH
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~ 321 (789)
|.-+++.+++|+|||+..+--+...+ + .+-.+|++. +.+-..|+.+.+..+
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~-~-------~ge~~lyvs-~ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGL-Q-------MGEPGIYVA-LEEHPVQVRRNMAQF 71 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH-H-------cCCcEEEEE-eeCCHHHHHHHHHHh
Confidence 46789999999999985433333333 2 255577776 456666777766654
No 335
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=90.87 E-value=2.1 Score=44.11 Aligned_cols=51 Identities=18% Similarity=0.178 Sum_probs=29.2
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHH
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK 320 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~ 320 (789)
.|..+++.+++|+|||... +.++.+.+.. +..++++.- .+.+.++.+.+..
T Consensus 19 ~G~~~~i~G~~G~GKT~l~-~~~~~~~~~~-------g~~~~~is~-e~~~~~i~~~~~~ 69 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFC-LHFAYKGLRD-------GDPVIYVTT-EESRESIIRQAAQ 69 (229)
T ss_pred CCeEEEEECCCCCChHHHH-HHHHHHHHhc-------CCeEEEEEc-cCCHHHHHHHHHH
Confidence 4567899999999999753 3333333221 344666653 3344455444443
No 336
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.85 E-value=1.5 Score=48.90 Aligned_cols=39 Identities=15% Similarity=0.224 Sum_probs=22.9
Q ss_pred CceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEe
Q 003881 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 371 ~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~S 410 (789)
....++||||+|.|....+. .+.+.+...+....+|+.+
T Consensus 118 ~~~kviIIDEa~~l~~~a~n-aLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFN-ALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCHHHHH-HHHHHHhcCCCCeEEEEEc
Confidence 46789999999997643222 3444444444444455443
No 337
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=90.85 E-value=1.4 Score=50.69 Aligned_cols=147 Identities=14% Similarity=0.146 Sum_probs=83.9
Q ss_pred CCCcHHHHHHHHHHHc------C----CCEEEEccCCChhhHHHHHHHH-HHHhcCccccccCCCeEEEEcCcHHHHHHH
Q 003881 246 EKPTSIQCQALPIILS------G----RDIIGIAKTGSGKTAAFVLPMI-VHIMDQPELQKEEGPIGVICAPTRELAHQI 314 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~------g----rdvll~a~TGsGKTla~llpil-~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi 314 (789)
..+-|+|.-++-.|+- + +-.+|..+-+-|||......++ ..++.. ..+....|++|+.+-+.+.
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-----~~~~~~~i~A~s~~qa~~~ 134 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-----RSGAGIYILAPSVEQAANS 134 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-----hcCCcEEEEeccHHHHHHh
Confidence 3567999999988881 1 3467888888899964332222 222222 4567789999999999999
Q ss_pred HHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHH---HHHHHhh--cccccCceeEEEEeccchhccCCC
Q 003881 315 YLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGR---LIDMLKM--KALTMSRVTYLVLDEADRMFDLGF 389 (789)
Q Consensus 315 ~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~---L~~~l~~--~~~~l~~i~~lVvDEah~m~~~~f 389 (789)
...++..+.... +... ......+.+..+... .+..+.. +...-.+..+.||||.|...+..
T Consensus 135 F~~ar~mv~~~~--------~l~~-----~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~- 200 (546)
T COG4626 135 FNPARDMVKRDD--------DLRD-----LCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE- 200 (546)
T ss_pred hHHHHHHHHhCc--------chhh-----hhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH-
Confidence 988887765332 0000 000011111122211 1222222 12223357889999999865542
Q ss_pred hHHHHHHHhhc--CCCceEEEEecc
Q 003881 390 EPQIRSIVGQI--RPDRQTLLFSAT 412 (789)
Q Consensus 390 ~~~i~~il~~l--~~~~q~ll~SAT 412 (789)
..+..+..-+ +++.+++..|..
T Consensus 201 -~~~~~~~~g~~ar~~~l~~~ITT~ 224 (546)
T COG4626 201 -DMYSEAKGGLGARPEGLVVYITTS 224 (546)
T ss_pred -HHHHHHHhhhccCcCceEEEEecC
Confidence 3444444433 456677766653
No 338
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.63 E-value=1.9 Score=50.13 Aligned_cols=39 Identities=13% Similarity=0.205 Sum_probs=25.9
Q ss_pred CceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEe
Q 003881 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 371 ~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~S 410 (789)
.+++++||||+|+|....+ +.+.+++...++...+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4678999999998765433 34555666655565555544
No 339
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=90.63 E-value=0.72 Score=47.96 Aligned_cols=111 Identities=23% Similarity=0.225 Sum_probs=54.9
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEc---CcHHHHHHHHHHHHHHhhhcCCeEEEEECCCC
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA---PTRELAHQIYLETKKFAKSHGIRVSAVYGGMS 337 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~---PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~ 337 (789)
.|.-++++|++|+|||.. ++-++.++..+ .+..++++. |..+++..+.. .. .++....+..+..
T Consensus 12 ~G~l~lI~G~~G~GKT~~-~~~~~~~~~~~------~g~~vly~s~E~~~~~~~~r~~~---~~---~~~~~~~~~~~~~ 78 (242)
T cd00984 12 PGDLIIIAARPSMGKTAF-ALNIAENIAKK------QGKPVLFFSLEMSKEQLLQRLLA---SE---SGISLSKLRTGSL 78 (242)
T ss_pred CCeEEEEEeCCCCCHHHH-HHHHHHHHHHh------CCCceEEEeCCCCHHHHHHHHHH---Hh---cCCCHHHHhcCCC
Confidence 456688999999999974 55554444332 145577775 33444433321 11 1221111111111
Q ss_pred hHHH-------HHHHhcCCcEEE-----eChHHHHHHHhhcccccCceeEEEEeccchhcc
Q 003881 338 KLDQ-------FKELKAGCEIVI-----ATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD 386 (789)
Q Consensus 338 ~~~~-------~~~l~~~~dIiV-----~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~ 386 (789)
.... ...+. ...+.| .|+..|...+..... -..+++||||=.+.|..
T Consensus 79 ~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~l~~~i~~~~~-~~~~~~vvID~l~~l~~ 137 (242)
T cd00984 79 SDEDWERLAEAIGELK-ELPIYIDDSSSLTVSDIRSRARRLKK-EHGLGLIVIDYLQLMSG 137 (242)
T ss_pred CHHHHHHHHHHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcCchhcCC
Confidence 1111 11122 233444 255566655543221 22788999999997643
No 340
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=90.59 E-value=0.76 Score=44.94 Aligned_cols=42 Identities=12% Similarity=0.245 Sum_probs=28.2
Q ss_pred CceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEeccC
Q 003881 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (789)
Q Consensus 371 ~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~ 413 (789)
...+++|||+||.|-.. -...+.+.++.-+....+|++|..+
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECCh
Confidence 56899999999987643 2456667777766666666666543
No 341
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=90.57 E-value=2.7 Score=47.68 Aligned_cols=16 Identities=38% Similarity=0.488 Sum_probs=13.6
Q ss_pred CEEEEccCCChhhHHH
Q 003881 264 DIIGIAKTGSGKTAAF 279 (789)
Q Consensus 264 dvll~a~TGsGKTla~ 279 (789)
-+++++++|+|||.+.
T Consensus 101 vi~~vG~~GsGKTTta 116 (428)
T TIGR00959 101 VILMVGLQGSGKTTTC 116 (428)
T ss_pred EEEEECCCCCcHHHHH
Confidence 4788999999999763
No 342
>PRK10867 signal recognition particle protein; Provisional
Probab=90.44 E-value=3.3 Score=47.05 Aligned_cols=16 Identities=31% Similarity=0.428 Sum_probs=13.4
Q ss_pred CEEEEccCCChhhHHH
Q 003881 264 DIIGIAKTGSGKTAAF 279 (789)
Q Consensus 264 dvll~a~TGsGKTla~ 279 (789)
-+++++++|+|||...
T Consensus 102 vI~~vG~~GsGKTTta 117 (433)
T PRK10867 102 VIMMVGLQGAGKTTTA 117 (433)
T ss_pred EEEEECCCCCcHHHHH
Confidence 4778899999999763
No 343
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.43 E-value=2.5 Score=47.68 Aligned_cols=23 Identities=26% Similarity=0.211 Sum_probs=16.5
Q ss_pred CEEEEccCCChhhHHHHHHHHHHH
Q 003881 264 DIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 264 dvll~a~TGsGKTla~llpil~~l 287 (789)
.+|+++|.|+|||.++.+ +...+
T Consensus 40 a~lf~Gp~G~GKtt~A~~-~a~~l 62 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARV-FAKAV 62 (397)
T ss_pred eEEEECCCCCCHHHHHHH-HHHHh
Confidence 488999999999986433 33444
No 344
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.31 E-value=1.1 Score=51.41 Aligned_cols=16 Identities=31% Similarity=0.256 Sum_probs=13.7
Q ss_pred EEEEccCCChhhHHHH
Q 003881 265 IIGIAKTGSGKTAAFV 280 (789)
Q Consensus 265 vll~a~TGsGKTla~l 280 (789)
+|+++|.|+|||.++.
T Consensus 43 ~Lf~GP~GtGKTTlAr 58 (484)
T PRK14956 43 YIFFGPRGVGKTTIAR 58 (484)
T ss_pred EEEECCCCCCHHHHHH
Confidence 7999999999997633
No 345
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.22 E-value=3.9 Score=43.36 Aligned_cols=149 Identities=18% Similarity=0.317 Sum_probs=83.1
Q ss_pred CCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCC-----CEEEEccCCChhhHHHHHHHHHHHhcCcccccc
Q 003881 222 RPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGR-----DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKE 296 (789)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~gr-----dvll~a~TGsGKTla~llpil~~l~~~~~~~~~ 296 (789)
+|-..|.+..=-+...++|+..=+ .|+- +|.++.|+ .+|+.+|.|+||+ |+.-+++.-.
T Consensus 127 KPNVkWsDVAGLE~AKeALKEAVI---LPIK---FPqlFtGkR~PwrgiLLyGPPGTGKS--YLAKAVATEA-------- 190 (439)
T KOG0739|consen 127 KPNVKWSDVAGLEGAKEALKEAVI---LPIK---FPQLFTGKRKPWRGILLYGPPGTGKS--YLAKAVATEA-------- 190 (439)
T ss_pred CCCCchhhhccchhHHHHHHhhee---eccc---chhhhcCCCCcceeEEEeCCCCCcHH--HHHHHHHhhc--------
Confidence 444566665333344445544311 1221 56677774 5899999999999 5555554421
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEE
Q 003881 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYL 376 (789)
Q Consensus 297 ~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~l 376 (789)
+ ...+-+-+..|+..|.-+-.++.+. |..+.+. +.-++|
T Consensus 191 -n-STFFSvSSSDLvSKWmGESEkLVkn----------------------------------LFemARe-----~kPSII 229 (439)
T KOG0739|consen 191 -N-STFFSVSSSDLVSKWMGESEKLVKN----------------------------------LFEMARE-----NKPSII 229 (439)
T ss_pred -C-CceEEeehHHHHHHHhccHHHHHHH----------------------------------HHHHHHh-----cCCcEE
Confidence 1 3577788889998887666666431 1222221 234569
Q ss_pred EEeccchhccCCC---hHHHHHH----HhhcC----CCceEEEEeccC-cHHHHHHHHHHhCC
Q 003881 377 VLDEADRMFDLGF---EPQIRSI----VGQIR----PDRQTLLFSATM-PRKVEKLAREILSD 427 (789)
Q Consensus 377 VvDEah~m~~~~f---~~~i~~i----l~~l~----~~~q~ll~SAT~-~~~i~~l~~~~l~~ 427 (789)
.|||+|.|....- ....+.| |-+++ .+--+|.+.||- |=.+...++.-+..
T Consensus 230 FiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFek 292 (439)
T KOG0739|consen 230 FIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEK 292 (439)
T ss_pred EeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhc
Confidence 9999997754321 1222222 22222 344688999994 43444444444443
No 346
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=90.18 E-value=0.74 Score=47.43 Aligned_cols=133 Identities=13% Similarity=0.157 Sum_probs=64.5
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhc-----CCeEEEEECCC
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH-----GIRVSAVYGGM 336 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~-----~i~v~~~~gg~ 336 (789)
|.-+++.+++|+|||+..+--+.+.+.. .+-++++++- .+-..++.+.++.+.-.. .-....+....
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~-------~ge~vlyvs~-ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~ 90 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKN-------FGEKVLYVSF-EEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFP 90 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHH-------HT--EEEEES-SS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSG
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhh-------cCCcEEEEEe-cCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccc
Confidence 4678999999999997544333344422 0344777764 344556666666542100 00111111110
Q ss_pred ChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCC----ChHHHHHHHhhcCCCceEEEEecc
Q 003881 337 SKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG----FEPQIRSIVGQIRPDRQTLLFSAT 412 (789)
Q Consensus 337 ~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~----f~~~i~~il~~l~~~~q~ll~SAT 412 (789)
..... . -..+..+...+......+ +.++||||-...+.... +...+..++..++....++++++.
T Consensus 91 ~~~~~--------~--~~~~~~l~~~i~~~i~~~-~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~~ 159 (226)
T PF06745_consen 91 ERIGW--------S--PNDLEELLSKIREAIEEL-KPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTSE 159 (226)
T ss_dssp GGST---------T--SCCHHHHHHHHHHHHHHH-TSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred ccccc--------c--ccCHHHHHHHHHHHHHhc-CCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEEc
Confidence 00000 0 123444444443321112 23789999999873222 233455556666555566666666
Q ss_pred C
Q 003881 413 M 413 (789)
Q Consensus 413 ~ 413 (789)
.
T Consensus 160 ~ 160 (226)
T PF06745_consen 160 M 160 (226)
T ss_dssp E
T ss_pred c
Confidence 3
No 347
>PRK10689 transcription-repair coupling factor; Provisional
Probab=90.12 E-value=0.86 Score=58.01 Aligned_cols=98 Identities=11% Similarity=0.131 Sum_probs=72.5
Q ss_pred EEecCCCcccHHHHHHh-cCCCCCCCCEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCc
Q 003881 447 VHVIPSDAEKLPWLLEK-LPGMIDDGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVY 521 (789)
Q Consensus 447 ~~~~~~~~~k~~~L~~~-L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~ 521 (789)
+...+....|....+.. +.......++||.||++.-+.++++.|.+. ++.+..+++..+..++..+++.+++|.+
T Consensus 625 Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~ 704 (1147)
T PRK10689 625 LVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKI 704 (1147)
T ss_pred EEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCC
Confidence 34445556666432211 111224568999999999999988888653 4678889999999999999999999999
Q ss_pred ceEEeeh-hhhccCCCCCccEEEE
Q 003881 522 HVLIATD-VAARGLDIKSIKSVVN 544 (789)
Q Consensus 522 ~VLVaT~-v~~rGlDI~~v~~VI~ 544 (789)
+|||+|. .+...+.+..+.+||.
T Consensus 705 dIVVgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 705 DILIGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred CEEEECHHHHhCCCCHhhCCEEEE
Confidence 9999995 4555677778888774
No 348
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=90.05 E-value=2.7 Score=44.27 Aligned_cols=115 Identities=14% Similarity=0.110 Sum_probs=58.3
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHH
Q 003881 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (789)
Q Consensus 263 rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~ 342 (789)
.=+++.|.+|.|||.. ++-+..++... .+..++++..= .-..++...+-... .++....+..+.-....+
T Consensus 20 ~L~vi~a~pg~GKT~~-~l~ia~~~a~~------~~~~vly~SlE-m~~~~l~~R~la~~--s~v~~~~i~~g~l~~~e~ 89 (259)
T PF03796_consen 20 ELTVIAARPGVGKTAF-ALQIALNAALN------GGYPVLYFSLE-MSEEELAARLLARL--SGVPYNKIRSGDLSDEEF 89 (259)
T ss_dssp -EEEEEESTTSSHHHH-HHHHHHHHHHT------TSSEEEEEESS-S-HHHHHHHHHHHH--HTSTHHHHHCCGCHHHHH
T ss_pred cEEEEEecccCCchHH-HHHHHHHHHHh------cCCeEEEEcCC-CCHHHHHHHHHHHh--hcchhhhhhccccCHHHH
Confidence 4578889999999974 55555555432 23567777552 11222322222221 122222222232222222
Q ss_pred HHHh------cCCcEEE-e----ChHHHHHHHhhcccccCceeEEEEeccchhccC
Q 003881 343 KELK------AGCEIVI-A----TPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL 387 (789)
Q Consensus 343 ~~l~------~~~dIiV-~----Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~ 387 (789)
..+. ....++| . |+..|...+..-......+.+||||=.|.|...
T Consensus 90 ~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~ 145 (259)
T PF03796_consen 90 ERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSE 145 (259)
T ss_dssp HHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTS
T ss_pred HHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCC
Confidence 2221 1233443 3 445555555443333378899999999988763
No 349
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=89.96 E-value=1.1 Score=53.40 Aligned_cols=40 Identities=8% Similarity=0.081 Sum_probs=24.9
Q ss_pred cCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEe
Q 003881 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 370 l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~S 410 (789)
+.+.++|||||+|+|.... ...+.+++...+....+|+.+
T Consensus 117 ~gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 4567899999999865422 234555555545555555544
No 350
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=89.94 E-value=1.4 Score=49.58 Aligned_cols=140 Identities=17% Similarity=0.116 Sum_probs=76.2
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHH
Q 003881 236 LMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIY 315 (789)
Q Consensus 236 l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~ 315 (789)
+++.|.+. +..+-..|..+.-..-.|.- .+.+=.|||||.. ++.-+.++... ...-+++|.+=|+.|+.++.
T Consensus 152 ~l~~iesk-IanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~-La~Kaa~lh~k-----nPd~~I~~Tfftk~L~s~~r 223 (660)
T COG3972 152 LLDTIESK-IANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTEL-LAHKAAELHSK-----NPDSRIAFTFFTKILASTMR 223 (660)
T ss_pred HHHHHHHH-HhcccchhheeeeecCCchh-hhhcccCCCchhH-HHHHHHHHhcC-----CCCceEEEEeehHHHHHHHH
Confidence 34444332 33444556665544444444 5567789999986 33334455432 23456899999999999999
Q ss_pred HHHHHHhhhc--------CCeEEEEECCCChHHHHHH---HhcCCcEEEeChHHHHHHH----hhcccccCceeEEEEec
Q 003881 316 LETKKFAKSH--------GIRVSAVYGGMSKLDQFKE---LKAGCEIVIATPGRLIDML----KMKALTMSRVTYLVLDE 380 (789)
Q Consensus 316 ~~~~~~~~~~--------~i~v~~~~gg~~~~~~~~~---l~~~~dIiV~Tp~~L~~~l----~~~~~~l~~i~~lVvDE 380 (789)
..+.+|+-.. .+.++.-.||.+....... ...-..+-++--+.-.+.. -....++.-+++|.|||
T Consensus 224 ~lv~~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~~~~~~~yD~ilIDE 303 (660)
T COG3972 224 TLVPEFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIADINNKKAYDYILIDE 303 (660)
T ss_pred HHHHHHHHHHhhcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHhhhccccccEEEecc
Confidence 9888887432 2334445566654332221 1111122222111111111 11122356689999999
Q ss_pred cch
Q 003881 381 ADR 383 (789)
Q Consensus 381 ah~ 383 (789)
++-
T Consensus 304 ~QD 306 (660)
T COG3972 304 SQD 306 (660)
T ss_pred ccc
Confidence 996
No 351
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=89.93 E-value=3.2 Score=46.76 Aligned_cols=126 Identities=16% Similarity=0.189 Sum_probs=63.0
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeE-EEEcCc-HHHHHHHHHHHHHHhhhcCCeEEEEECCCChHH
Q 003881 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIG-VICAPT-RELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (789)
Q Consensus 263 rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~v-LIl~Pt-reLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~ 340 (789)
.-+++++++|+|||.+..-.+...... .+.++ |+-+-+ |..+. ..++.++...++.+..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~-------~G~~V~Lit~Dt~R~aA~---eQLk~yAe~lgvp~~~--------- 284 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLH-------MGKSVSLYTTDNYRIAAI---EQLKRYADTMGMPFYP--------- 284 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHh-------cCCeEEEecccchhhhHH---HHHHHHHHhcCCCeee---------
Confidence 347789999999998643333222222 13334 343333 33332 2455555444443211
Q ss_pred HHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhc-cCCChHHHHHHHhhcC---CCceEEEEeccCcH-
Q 003881 341 QFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF-DLGFEPQIRSIVGQIR---PDRQTLLFSATMPR- 415 (789)
Q Consensus 341 ~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~-~~~f~~~i~~il~~l~---~~~q~ll~SAT~~~- 415 (789)
+..+..+...+. -..+++||||=+-++. +......+..++..+. +...++.++||...
T Consensus 285 ------------~~~~~~l~~~l~-----~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~ 347 (432)
T PRK12724 285 ------------VKDIKKFKETLA-----RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH 347 (432)
T ss_pred ------------hHHHHHHHHHHH-----hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH
Confidence 001222333332 2456889999766542 1112233344444332 23457888999866
Q ss_pred HHHHHHHHH
Q 003881 416 KVEKLAREI 424 (789)
Q Consensus 416 ~i~~l~~~~ 424 (789)
.+...+..|
T Consensus 348 ~~~~~~~~f 356 (432)
T PRK12724 348 HTLTVLKAY 356 (432)
T ss_pred HHHHHHHHh
Confidence 555555555
No 352
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=89.87 E-value=1.4 Score=52.29 Aligned_cols=40 Identities=10% Similarity=0.154 Sum_probs=26.1
Q ss_pred cCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEe
Q 003881 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 370 l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~S 410 (789)
....++|||||+|.|.... .+.+.+.+...++...+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 4578899999999976432 234555566555555566554
No 353
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=89.59 E-value=3.5 Score=48.15 Aligned_cols=68 Identities=26% Similarity=0.516 Sum_probs=56.1
Q ss_pred EEEEecccccHHHHHHHHHHc-----CCceeeccCCCCHHHHHHHHHHhhcCCcceEEee-----hhhhcc-CCCCCccE
Q 003881 473 VLVFASKKTTVDEIESQLAQK-----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT-----DVAARG-LDIKSIKS 541 (789)
Q Consensus 473 vLVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT-----~v~~rG-lDI~~v~~ 541 (789)
+||+++|++-|.++++.+... ++.+..++|+++...+...++ .| .+|||+| +.+.++ +++..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~---~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALK---RG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHh---cC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 999999999999998887653 567899999999877665554 46 9999999 456677 99999999
Q ss_pred EEE
Q 003881 542 VVN 544 (789)
Q Consensus 542 VI~ 544 (789)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 995
No 354
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=89.45 E-value=6.2 Score=43.85 Aligned_cols=109 Identities=14% Similarity=0.165 Sum_probs=58.6
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHH
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~ 341 (789)
.+.+.+.++.|.|||. ++-++-..+... .+.+ +...+...+++..+.++. ++...-.
T Consensus 62 ~~GlYl~G~vG~GKT~--Lmd~f~~~lp~~-----~k~R----~HFh~Fm~~vh~~l~~~~-----------~~~~~l~- 118 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTM--LMDLFYDSLPIK-----RKRR----VHFHEFMLDVHSRLHQLR-----------GQDDPLP- 118 (362)
T ss_pred CceEEEECCCCCchhH--HHHHHHHhCCcc-----cccc----ccccHHHHHHHHHHHHHh-----------CCCccHH-
Confidence 3678999999999995 344443332210 1111 245577777777777663 1111111
Q ss_pred HHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhc-CCCceEEEEeccCcHH
Q 003881 342 FKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPDRQTLLFSATMPRK 416 (789)
Q Consensus 342 ~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l-~~~~q~ll~SAT~~~~ 416 (789)
.+.+.+ .....+|+|||.|- -|.+-.-.+..++..+ ....-+|+.|-+.|..
T Consensus 119 ----------------~va~~l------~~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~ 171 (362)
T PF03969_consen 119 ----------------QVADEL------AKESRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPED 171 (362)
T ss_pred ----------------HHHHHH------HhcCCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHH
Confidence 111111 23456799999994 2222223344444443 3455677777777755
No 355
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.44 E-value=1.7 Score=51.41 Aligned_cols=44 Identities=23% Similarity=0.241 Sum_probs=26.9
Q ss_pred cCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEeccCcH
Q 003881 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPR 415 (789)
Q Consensus 370 l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~ 415 (789)
....+++||||+|+|.... .+.+.+++...+...-+|+.+ |-+.
T Consensus 116 ~~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t-te~~ 159 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT-TEPE 159 (584)
T ss_pred cCCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe-CChH
Confidence 3578899999999876543 234455555544455445444 5443
No 356
>PHA00729 NTP-binding motif containing protein
Probab=89.38 E-value=2.9 Score=43.11 Aligned_cols=74 Identities=14% Similarity=0.189 Sum_probs=38.3
Q ss_pred cEEEeChHHHHHHHhhcccccCceeEEEEeccchhccC-CCh----HHHHHHHhhcCCCceEEEEeccCcHHHHHHHHH
Q 003881 350 EIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFE----PQIRSIVGQIRPDRQTLLFSATMPRKVEKLARE 423 (789)
Q Consensus 350 dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~-~f~----~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~ 423 (789)
..++.+...|...+........++++||||++=.-+.. .|. .....+...++...+++.+...-+..+...++.
T Consensus 60 ~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 60 NSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred cEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 45555555565555432222335678999994311110 011 122234444444566777777767666666655
No 357
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=89.33 E-value=0.95 Score=50.39 Aligned_cols=50 Identities=18% Similarity=0.296 Sum_probs=33.7
Q ss_pred CCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhc
Q 003881 221 PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMD 289 (789)
Q Consensus 221 P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~ 289 (789)
|..+.++.++++++.+++.+. .....+|++++||||||.. +-.++.++..
T Consensus 126 ~~~~~~l~~lgl~~~~~~~l~------------------~~~GlilI~G~TGSGKTT~-l~al~~~i~~ 175 (372)
T TIGR02525 126 PSDIPDLKQMGIEPDLFNSLL------------------PAAGLGLICGETGSGKSTL-AASIYQHCGE 175 (372)
T ss_pred CCcCCCHHHcCCCHHHHHHHH------------------hcCCEEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 344456788888876544332 1234689999999999974 5666777644
No 358
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=89.21 E-value=1.5 Score=47.54 Aligned_cols=66 Identities=29% Similarity=0.326 Sum_probs=40.5
Q ss_pred HHHHHcCCCCCcHHHHHHHHHH-HcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHH
Q 003881 238 HAISKQGYEKPTSIQCQALPII-LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (789)
Q Consensus 238 ~~l~~~g~~~ptpiQ~~~i~~i-l~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa 311 (789)
+.|.+.|. +++-|.+.|..+ ..+++++++++||||||.. +-.++..+...+ ..-+++++-.+.||.
T Consensus 109 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~~-----~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 109 DDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKND-----PTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhccC-----CCceEEEECCchhhc
Confidence 33444443 445555555544 4567999999999999974 444555543211 134577788887774
No 359
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.19 E-value=1.3 Score=52.45 Aligned_cols=19 Identities=21% Similarity=0.186 Sum_probs=15.1
Q ss_pred CCEEEEccCCChhhHHHHH
Q 003881 263 RDIIGIAKTGSGKTAAFVL 281 (789)
Q Consensus 263 rdvll~a~TGsGKTla~ll 281 (789)
+.+|+.++.|+|||.++.+
T Consensus 39 ha~Lf~GPpG~GKTtiAri 57 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARI 57 (624)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3578899999999986443
No 360
>CHL00181 cbbX CbbX; Provisional
Probab=89.16 E-value=2.1 Score=46.07 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=15.1
Q ss_pred CCCEEEEccCCChhhHHH
Q 003881 262 GRDIIGIAKTGSGKTAAF 279 (789)
Q Consensus 262 grdvll~a~TGsGKTla~ 279 (789)
+.++++.+++|+|||..+
T Consensus 59 ~~~ill~G~pGtGKT~lA 76 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVA 76 (287)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457899999999999753
No 361
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=89.15 E-value=0.92 Score=50.34 Aligned_cols=49 Identities=18% Similarity=0.293 Sum_probs=31.7
Q ss_pred CCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHh
Q 003881 221 PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (789)
Q Consensus 221 P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~ 288 (789)
|..+.+++++++++.+.+.+. ..+..++++++||||||.. +-.++.++.
T Consensus 111 ~~~~~~l~~l~~~~~~~~~~~------------------~~~glilI~GpTGSGKTTt-L~aLl~~i~ 159 (358)
T TIGR02524 111 PAEPPKLSKLDLPAAIIDAIA------------------PQEGIVFITGATGSGKSTL-LAAIIRELA 159 (358)
T ss_pred CCCCCCHHHcCCCHHHHHHHh------------------ccCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 445567777777654433221 2456799999999999975 455555553
No 362
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=89.14 E-value=1.9 Score=47.95 Aligned_cols=135 Identities=16% Similarity=0.162 Sum_probs=63.2
Q ss_pred CEEEEccCCChhhHHHHHHHHHHHhcCcccccc---CCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEE-CCCChH
Q 003881 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKE---EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVY-GGMSKL 339 (789)
Q Consensus 264 dvll~a~TGsGKTla~llpil~~l~~~~~~~~~---~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~-gg~~~~ 339 (789)
-+|+.++.|+||+.. .+.+...++........ ..+..+-+|+.-..|.++ ... ...++..+.-. .+...
T Consensus 43 A~Lf~Gp~G~GK~~l-A~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i----~~~-~HPDl~~i~~~~~~~~~- 115 (365)
T PRK07471 43 AWLIGGPQGIGKATL-AYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRI----AAG-AHGGLLTLERSWNEKGK- 115 (365)
T ss_pred eEEEECCCCCCHHHH-HHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHH----Hcc-CCCCeEEEecccccccc-
Confidence 489999999999975 55556666654321110 012334445543333322 111 11233332210 01000
Q ss_pred HHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEeccC
Q 003881 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (789)
Q Consensus 340 ~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~ 413 (789)
.....|.|-..-.+...+... .......+|||||+|.|-.. -.+.+.+.++..+....+|++|...
T Consensus 116 ------~~~~~I~VdqiR~l~~~~~~~-~~~~~~kVviIDead~m~~~-aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 116 ------RLRTVITVDEVRELISFFGLT-AAEGGWRVVIVDTADEMNAN-AANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred ------cccccccHHHHHHHHHHhCcC-cccCCCEEEEEechHhcCHH-HHHHHHHHHhcCCCCeEEEEEECCc
Confidence 001223333322233333222 12356789999999986432 2345555666544455555555443
No 363
>PF05729 NACHT: NACHT domain
Probab=89.04 E-value=2.2 Score=40.86 Aligned_cols=38 Identities=18% Similarity=0.329 Sum_probs=23.3
Q ss_pred EEEEeccchhccCC-------ChHHHHHHHhh-cCCCceEEEEecc
Q 003881 375 YLVLDEADRMFDLG-------FEPQIRSIVGQ-IRPDRQTLLFSAT 412 (789)
Q Consensus 375 ~lVvDEah~m~~~~-------f~~~i~~il~~-l~~~~q~ll~SAT 412 (789)
+||||-+|.+.... +...+..++.. +.+..++++.|.+
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~ 129 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRP 129 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcC
Confidence 49999999877632 22344455554 4556666666654
No 364
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=89.00 E-value=10 Score=39.16 Aligned_cols=51 Identities=10% Similarity=0.119 Sum_probs=29.7
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHH
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~ 321 (789)
+.-+++.+++|+|||... ..++...+. ++.+++++.=- +-..++.+.+..+
T Consensus 25 g~~~~i~G~~GsGKt~l~-~~~~~~~~~-------~g~~~~y~~~e-~~~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLS-QQFVYGALK-------QGKKVYVITTE-NTSKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHH-HHHHHHHHh-------CCCEEEEEEcC-CCHHHHHHHHHHC
Confidence 456888999999999753 333332222 24556666543 3344555555554
No 365
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=88.94 E-value=8.7 Score=44.91 Aligned_cols=129 Identities=16% Similarity=0.202 Sum_probs=79.5
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhh-cCCe-EEEEECCCCh
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS-HGIR-VSAVYGGMSK 338 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~-~~i~-v~~~~gg~~~ 338 (789)
..+-.+..-|=-.|||. |+.|++..++.. -.+-++.+++.-+..++-+.+++...+.. ++-+ ++..-
T Consensus 201 KQkaTVFLVPRRHGKTW-f~VpiIsllL~s-----~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k----- 269 (668)
T PHA03372 201 KQKATVFLVPRRHGKTW-FIIPIISFLLKN-----IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENK----- 269 (668)
T ss_pred hccceEEEecccCCcee-hHHHHHHHHHHh-----hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeec-----
Confidence 34566777888999997 689999888763 34677999999999888777766543321 2211 11111
Q ss_pred HHHHHHHhcCCcEEEeChHHH-----HHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhc-CCCceEEEEecc
Q 003881 339 LDQFKELKAGCEIVIATPGRL-----IDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPDRQTLLFSAT 412 (789)
Q Consensus 339 ~~~~~~l~~~~dIiV~Tp~~L-----~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l-~~~~q~ll~SAT 412 (789)
+-.|++.-|+.= ......+...-..+.+|+|||||-+. ...+..|+..+ ..++++|+.|.|
T Consensus 270 ---------~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 270 ---------DNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQNTTKIIFISST 336 (668)
T ss_pred ---------CcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC----HHHHHHhhhhhcccCceEEEEeCC
Confidence 112333322211 11223334445678999999999543 23455555554 367889999988
Q ss_pred C
Q 003881 413 M 413 (789)
Q Consensus 413 ~ 413 (789)
-
T Consensus 337 N 337 (668)
T PHA03372 337 N 337 (668)
T ss_pred C
Confidence 4
No 366
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=88.91 E-value=0.32 Score=62.30 Aligned_cols=93 Identities=24% Similarity=0.305 Sum_probs=75.2
Q ss_pred EEEEecccccHHHHHHHHHHcC-CceeeccCCCC-----------HHHHHHHHHHhhcCCcceEEeehhhhccCCCCCcc
Q 003881 473 VLVFASKKTTVDEIESQLAQKG-FKAAALHGDKD-----------QASRMEILQKFKSGVYHVLIATDVAARGLDIKSIK 540 (789)
Q Consensus 473 vLVF~~s~~~a~~l~~~L~~~g-~~v~~lhg~~~-----------~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~ 540 (789)
.++||.....+..+...++... ..+..+.|.+. +..+..++..|....+++|++|.++..|+|++.++
T Consensus 295 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~~ 374 (1606)
T KOG0701|consen 295 GIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKCN 374 (1606)
T ss_pred heeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhhh
Confidence 4788888888887777776542 23333444332 23467899999999999999999999999999999
Q ss_pred EEEEEcCCCCHHHHHHHHhhcCCCC
Q 003881 541 SVVNFDIARDMDMHVHRIGRTGRAG 565 (789)
Q Consensus 541 ~VI~~d~p~s~~~yiQriGR~gR~G 565 (789)
.|+.++.|.....|+|..||+-++.
T Consensus 375 ~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 375 LVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hheeccCcchHHHHHHhhcccccch
Confidence 9999999999999999999997765
No 367
>PRK11823 DNA repair protein RadA; Provisional
Probab=88.83 E-value=1.4 Score=50.45 Aligned_cols=51 Identities=22% Similarity=0.300 Sum_probs=32.4
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHH
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~ 321 (789)
|.-+++.+++|+|||.. ++-++..+.+ .+.++|++.- .+-..|+...+.++
T Consensus 80 Gs~~lI~G~pG~GKTtL-~lq~a~~~a~-------~g~~vlYvs~-Ees~~qi~~ra~rl 130 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTL-LLQVAARLAA-------AGGKVLYVSG-EESASQIKLRAERL 130 (446)
T ss_pred CEEEEEECCCCCCHHHH-HHHHHHHHHh-------cCCeEEEEEc-cccHHHHHHHHHHc
Confidence 45678899999999974 4444444322 2456788764 45556776655554
No 368
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=88.82 E-value=3.8 Score=49.96 Aligned_cols=44 Identities=11% Similarity=0.245 Sum_probs=26.1
Q ss_pred eEEEEeccchhccCCC----hHHHHHHHhhcCCCceEEEEeccCcHHH
Q 003881 374 TYLVLDEADRMFDLGF----EPQIRSIVGQIRPDRQTLLFSATMPRKV 417 (789)
Q Consensus 374 ~~lVvDEah~m~~~~f----~~~i~~il~~l~~~~q~ll~SAT~~~~i 417 (789)
.+|+|||+|.+...+- ...+..++..+-...++.++.||-+++.
T Consensus 280 ~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~ 327 (758)
T PRK11034 280 SILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF 327 (758)
T ss_pred CEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHH
Confidence 4899999999876542 1223334443333445667777765554
No 369
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=88.81 E-value=6.8 Score=42.78 Aligned_cols=134 Identities=19% Similarity=0.287 Sum_probs=64.9
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEE-cCc-HHHHHHHHHHHHHHhhhcCCeEEEEECCCChH
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC-APT-RELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl-~Pt-reLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~ 339 (789)
+.-+++++++|+|||.. +..|...+.. .+.+++++ +.+ |..+.+ .+..+....++.++....+....
T Consensus 114 ~~vi~lvGpnGsGKTTt--~~kLA~~l~~------~g~~V~Li~~D~~r~~a~e---ql~~~a~~~~i~~~~~~~~~dpa 182 (318)
T PRK10416 114 PFVILVVGVNGVGKTTT--IGKLAHKYKA------QGKKVLLAAGDTFRAAAIE---QLQVWGERVGVPVIAQKEGADPA 182 (318)
T ss_pred CeEEEEECCCCCcHHHH--HHHHHHHHHh------cCCeEEEEecCccchhhHH---HHHHHHHHcCceEEEeCCCCCHH
Confidence 35577899999999975 3333333322 23445554 444 333322 23334433455443332221110
Q ss_pred HHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccC-CChHHHHHHHhhc------CCCceEEEEecc
Q 003881 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQI------RPDRQTLLFSAT 412 (789)
Q Consensus 340 ~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~-~f~~~i~~il~~l------~~~~q~ll~SAT 412 (789)
....+.+... ....+++||||=+-++... .....+..+...+ .+...++.++||
T Consensus 183 -----------------~~v~~~l~~~--~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~ 243 (318)
T PRK10416 183 -----------------SVAFDAIQAA--KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDAT 243 (318)
T ss_pred -----------------HHHHHHHHHH--HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECC
Confidence 0111111111 1356788999988875422 1223344443322 244567889999
Q ss_pred CcHHHHHHHHHHh
Q 003881 413 MPRKVEKLAREIL 425 (789)
Q Consensus 413 ~~~~i~~l~~~~l 425 (789)
...+....+..|.
T Consensus 244 ~g~~~~~~a~~f~ 256 (318)
T PRK10416 244 TGQNALSQAKAFH 256 (318)
T ss_pred CChHHHHHHHHHH
Confidence 7654444455554
No 370
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=88.77 E-value=2.8 Score=45.03 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=15.4
Q ss_pred CCCEEEEccCCChhhHHH
Q 003881 262 GRDIIGIAKTGSGKTAAF 279 (789)
Q Consensus 262 grdvll~a~TGsGKTla~ 279 (789)
+.++++.+++|+|||.++
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 458999999999999754
No 371
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=88.66 E-value=6.9 Score=38.78 Aligned_cols=53 Identities=19% Similarity=0.323 Sum_probs=40.0
Q ss_pred cCceeEEEEeccchhccCCCh--HHHHHHHhhcCCCceEEEEeccCcHHHHHHHH
Q 003881 370 MSRVTYLVLDEADRMFDLGFE--PQIRSIVGQIRPDRQTLLFSATMPRKVEKLAR 422 (789)
Q Consensus 370 l~~i~~lVvDEah~m~~~~f~--~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~ 422 (789)
-..+++||+||+-..++.++. ..+..++...+....+|+..-.+|+.+.+++.
T Consensus 113 ~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD 167 (178)
T PRK07414 113 EGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIAD 167 (178)
T ss_pred CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCC
Confidence 356899999999988888755 45667777777777777777778888765543
No 372
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=88.66 E-value=1.4 Score=45.27 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=13.6
Q ss_pred CEEEEccCCChhhHH
Q 003881 264 DIIGIAKTGSGKTAA 278 (789)
Q Consensus 264 dvll~a~TGsGKTla 278 (789)
++|+.+|.|+|||..
T Consensus 52 h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTL 66 (233)
T ss_dssp EEEEESSTTSSHHHH
T ss_pred eEEEECCCccchhHH
Confidence 699999999999964
No 373
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=88.57 E-value=5.6 Score=48.69 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=14.6
Q ss_pred CCEEEEccCCChhhHH
Q 003881 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll~a~TGsGKTla 278 (789)
.++|+++++|+|||..
T Consensus 204 ~n~lL~G~pG~GKT~l 219 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAI 219 (731)
T ss_pred CceEEECCCCCCHHHH
Confidence 5899999999999975
No 374
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.43 E-value=1.1 Score=53.08 Aligned_cols=45 Identities=18% Similarity=0.287 Sum_probs=26.0
Q ss_pred cCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHH
Q 003881 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRK 416 (789)
Q Consensus 370 l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~ 416 (789)
..+++++||||+|+|....|. .+.+.+...+....+|+ .+|-+..
T Consensus 122 ~g~~KV~IIDEvh~Ls~~a~N-aLLKtLEEPP~~~~fIL-~Ttd~~k 166 (618)
T PRK14951 122 QGRFKVFMIDEVHMLTNTAFN-AMLKTLEEPPEYLKFVL-ATTDPQK 166 (618)
T ss_pred cCCceEEEEEChhhCCHHHHH-HHHHhcccCCCCeEEEE-EECCchh
Confidence 346889999999997654332 34444444344444444 4454433
No 375
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.37 E-value=6.2 Score=46.28 Aligned_cols=40 Identities=10% Similarity=0.063 Sum_probs=25.0
Q ss_pred cCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEe
Q 003881 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 370 l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~S 410 (789)
.....++||||||+|-... ...+.+.+...+....+|+.+
T Consensus 117 ~g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 3467899999999976532 234555555544455555544
No 376
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.34 E-value=0.99 Score=49.61 Aligned_cols=16 Identities=38% Similarity=0.526 Sum_probs=14.7
Q ss_pred CCEEEEccCCChhhHH
Q 003881 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll~a~TGsGKTla 278 (789)
||+++.+|+|+|||+.
T Consensus 385 RNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMF 400 (630)
T ss_pred hheeeeCCCCCCchHH
Confidence 7999999999999974
No 377
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=88.33 E-value=1.3 Score=48.66 Aligned_cols=44 Identities=23% Similarity=0.237 Sum_probs=29.6
Q ss_pred HHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHH
Q 003881 259 ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (789)
Q Consensus 259 il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa 311 (789)
+..+++++++++||||||.. +-.++.++ ...-+++++=-+.||.
T Consensus 157 v~~~~nili~G~tgSGKTTl-l~aL~~~i--------p~~~ri~tiEd~~El~ 200 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTF-TNAALREI--------PAIERLITVEDAREIV 200 (332)
T ss_pred HHcCCcEEEECCCCCCHHHH-HHHHHhhC--------CCCCeEEEecCCCccc
Confidence 44678999999999999974 45555554 1234566665666654
No 378
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=88.30 E-value=0.69 Score=50.94 Aligned_cols=45 Identities=24% Similarity=0.221 Sum_probs=30.5
Q ss_pred HHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHH
Q 003881 258 IILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (789)
Q Consensus 258 ~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa 311 (789)
++..+++++++++||||||.. +-.++.++ ....+++.+-.+.||.
T Consensus 158 ~v~~~~nilI~G~tGSGKTTl-l~aLl~~i--------~~~~rivtiEd~~El~ 202 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTM-SKTLISAI--------PPQERLITIEDTLELV 202 (344)
T ss_pred HHHcCCeEEEECCCCccHHHH-HHHHHccc--------CCCCCEEEECCCcccc
Confidence 345678999999999999974 44444443 1233467777887764
No 379
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.29 E-value=2.7 Score=46.21 Aligned_cols=16 Identities=25% Similarity=0.549 Sum_probs=14.5
Q ss_pred CCEEEEccCCChhhHH
Q 003881 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll~a~TGsGKTla 278 (789)
+.+|+.+|.|+|||+.
T Consensus 246 kgvLm~GPPGTGKTlL 261 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLL 261 (491)
T ss_pred ceeeeeCCCCCcHHHH
Confidence 6899999999999964
No 380
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=88.28 E-value=5.4 Score=43.09 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=24.1
Q ss_pred ceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEe
Q 003881 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 372 ~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~S 410 (789)
...+|||||+|.+... ....+..++...+....+|+.+
T Consensus 102 ~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 4678999999987542 1334555666555556555544
No 381
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=88.21 E-value=7.1 Score=42.97 Aligned_cols=142 Identities=17% Similarity=0.153 Sum_probs=73.5
Q ss_pred CcHHHHHHHHHHHcCCC------EEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHH
Q 003881 248 PTSIQCQALPIILSGRD------IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 248 ptpiQ~~~i~~il~grd------vll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~ 321 (789)
.+..|...+..++...+ +++.|.+|+|||.. +..++.+. +-..+++.+-- |..+.-.+.++
T Consensus 10 ~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~-~r~~l~~~----------n~~~vw~n~~e--cft~~~lle~I 76 (438)
T KOG2543|consen 10 CRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYL-VRQLLRKL----------NLENVWLNCVE--CFTYAILLEKI 76 (438)
T ss_pred chHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHH-HHHHHhhc----------CCcceeeehHH--hccHHHHHHHH
Confidence 46788888888886654 38889999999965 33333332 11235555431 22233334444
Q ss_pred hhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhh--cccccCceeEEEEeccchhccCC--ChHHHHHHH
Q 003881 322 AKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM--KALTMSRVTYLVLDEADRMFDLG--FEPQIRSIV 397 (789)
Q Consensus 322 ~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~--~~~~l~~i~~lVvDEah~m~~~~--f~~~i~~il 397 (789)
+...+ .+-..|........ +-..++..+.+ ...+....-+||+|-||.+-|++ ..+.+..+-
T Consensus 77 L~~~~---~~d~dg~~~~~~~e-----------n~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~ 142 (438)
T KOG2543|consen 77 LNKSQ---LADKDGDKVEGDAE-----------NFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLY 142 (438)
T ss_pred HHHhc---cCCCchhhhhhHHH-----------HHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHH
Confidence 32221 00000111100000 11112222222 12222456789999999998876 223344444
Q ss_pred hhcCCCceEEEEeccCcHH
Q 003881 398 GQIRPDRQTLLFSATMPRK 416 (789)
Q Consensus 398 ~~l~~~~q~ll~SAT~~~~ 416 (789)
..++.+.-.|++|+++++.
T Consensus 143 el~~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 143 ELLNEPTIVIILSAPSCEK 161 (438)
T ss_pred HHhCCCceEEEEeccccHH
Confidence 4555555678889998755
No 382
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=88.13 E-value=1.1 Score=45.66 Aligned_cols=41 Identities=22% Similarity=0.223 Sum_probs=25.4
Q ss_pred CceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEecc
Q 003881 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT 412 (789)
Q Consensus 371 ~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT 412 (789)
.+.++||+||||.|-+- -...++..+.......++.+..-+
T Consensus 112 grhKIiILDEADSMT~g-AQQAlRRtMEiyS~ttRFalaCN~ 152 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTAG-AQQALRRTMEIYSNTTRFALACNQ 152 (333)
T ss_pred CceeEEEeeccchhhhH-HHHHHHHHHHHHcccchhhhhhcc
Confidence 67889999999987653 233455555555444444444444
No 383
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=88.09 E-value=2.7 Score=49.55 Aligned_cols=44 Identities=11% Similarity=0.237 Sum_probs=24.3
Q ss_pred cCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEeccCcH
Q 003881 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPR 415 (789)
Q Consensus 370 l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~ 415 (789)
.....++||||+|+|....+. .+.+.+...+... +++|.+|-+.
T Consensus 117 ~~~~kViIIDE~~~Lt~~a~n-aLLKtLEepp~~~-ifIlatt~~~ 160 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGAFN-ALLKTLEEPPAHV-IFILATTEPH 160 (559)
T ss_pred cCCeEEEEEECcccCCHHHHH-HHHHHhcCCCCCe-EEEEEeCChh
Confidence 456889999999987543222 3334444433333 3344445443
No 384
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=88.08 E-value=0.78 Score=55.07 Aligned_cols=92 Identities=22% Similarity=0.346 Sum_probs=76.9
Q ss_pred CCcccHHHHHHhcCCCCCCC-CEEEEecccccHHHHHHHHHHc-CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehh
Q 003881 452 SDAEKLPWLLEKLPGMIDDG-DVLVFASKKTTVDEIESQLAQK-GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDV 529 (789)
Q Consensus 452 ~~~~k~~~L~~~L~~~~~~~-kvLVF~~s~~~a~~l~~~L~~~-g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v 529 (789)
..+.|.+.+++++.+.+..| .+||.++-+.....+...|+.. +.++.++|++++..+|.....+..+|+.+|+|.|..
T Consensus 226 TGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRS 305 (730)
T COG1198 226 TGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRS 305 (730)
T ss_pred CCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEech
Confidence 45778888888888777666 7999999999999888888654 889999999999999999999999999999999964
Q ss_pred hhccCCCCCccEEEE
Q 003881 530 AARGLDIKSIKSVVN 544 (789)
Q Consensus 530 ~~rGlDI~~v~~VI~ 544 (789)
+- =+-++++..||.
T Consensus 306 Al-F~Pf~~LGLIIv 319 (730)
T COG1198 306 AL-FLPFKNLGLIIV 319 (730)
T ss_pred hh-cCchhhccEEEE
Confidence 32 245667777774
No 385
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=87.93 E-value=1.1 Score=52.43 Aligned_cols=88 Identities=19% Similarity=0.306 Sum_probs=72.2
Q ss_pred HHHHHHhcCCCCCCCCEEEEeccc----ccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhh-h
Q 003881 457 LPWLLEKLPGMIDDGDVLVFASKK----TTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA-A 531 (789)
Q Consensus 457 ~~~L~~~L~~~~~~~kvLVF~~s~----~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~-~ 531 (789)
...++..+.....+.++.+-++|- .+++.+.++|...++.+.++.|.+....|..++....+|.++|+|.|-++ .
T Consensus 298 vVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ 377 (677)
T COG1200 298 VVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ 377 (677)
T ss_pred HHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh
Confidence 344455555554566899999984 56667777777789999999999999999999999999999999999765 6
Q ss_pred ccCCCCCccEEEE
Q 003881 532 RGLDIKSIKSVVN 544 (789)
Q Consensus 532 rGlDI~~v~~VI~ 544 (789)
..+++.++-.||.
T Consensus 378 d~V~F~~LgLVIi 390 (677)
T COG1200 378 DKVEFHNLGLVII 390 (677)
T ss_pred cceeecceeEEEE
Confidence 8899998888884
No 386
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.88 E-value=3.4 Score=49.13 Aligned_cols=40 Identities=10% Similarity=0.114 Sum_probs=23.3
Q ss_pred cCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEe
Q 003881 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 370 l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~S 410 (789)
.....++||||+|.|.... ...+...+...+...-+|+++
T Consensus 125 ~~~~KVvIIdEad~Lt~~a-~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAA-FNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred cCCCEEEEEeChhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 4577899999999975432 223444444444443344443
No 387
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=87.78 E-value=4.7 Score=44.19 Aligned_cols=144 Identities=18% Similarity=0.147 Sum_probs=63.4
Q ss_pred EEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHH-H---HHHHHHhhhcCCeEEEE--ECCCChH
Q 003881 266 IGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI-Y---LETKKFAKSHGIRVSAV--YGGMSKL 339 (789)
Q Consensus 266 ll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi-~---~~~~~~~~~~~i~v~~~--~gg~~~~ 339 (789)
|+.++-|+|||.+.++.++.+++..+. ...++++ ||..-+... . ..+..+... .+.+... ......
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~-----~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~- 72 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP-----GRRVIIA-STYRQARDIFGRFWKGIIELLPS-WFEIKFNEWNDRKII- 72 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS-------EEEEE-ESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-SSEEE-
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC-----CcEEEEe-cCHHHHHHHHHHhHHHHHHHHHH-hcCcccccCCCCcEE-
Confidence 567899999999888888888766532 2345555 665554442 2 223333332 1222111 010000
Q ss_pred HHHHHHhcCCcEEEeChHHH--HHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEecc--CcH
Q 003881 340 DQFKELKAGCEIVIATPGRL--IDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT--MPR 415 (789)
Q Consensus 340 ~~~~~l~~~~dIiV~Tp~~L--~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT--~~~ 415 (789)
+.++..|.+.+...- ..-+ .=..+++|||||+-.+.+..+...+...+.... ....+++|.| ...
T Consensus 73 -----~~nG~~i~~~~~~~~~~~~~~-----~G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~p~~~~~ 141 (384)
T PF03237_consen 73 -----LPNGSRIQFRGADSPDSGDNI-----RGFEYDLIIIDEAAKVPDDAFSELIRRLRATWG-GSIRMYISTPPNPGG 141 (384)
T ss_dssp -----ETTS-EEEEES-----SHHHH-----HTS--SEEEEESGGGSTTHHHHHHHHHHHHCST-T--EEEEEE---SSS
T ss_pred -----ecCceEEEEeccccccccccc-----cccccceeeeeecccCchHHHHHHHHhhhhccc-CcceEEeecCCCCCC
Confidence 034556666663221 1111 124678899999887654433333333332222 2222245544 333
Q ss_pred HHHHHHHHHhCCC
Q 003881 416 KVEKLAREILSDP 428 (789)
Q Consensus 416 ~i~~l~~~~l~~p 428 (789)
.+..+......+.
T Consensus 142 ~~~~~~~~~~~~~ 154 (384)
T PF03237_consen 142 WFYEIFQRNLDDD 154 (384)
T ss_dssp HHHHHHHHHHCTS
T ss_pred ceeeeeehhhcCC
Confidence 4555566655554
No 388
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.72 E-value=1.7 Score=52.11 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=38.2
Q ss_pred ceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEeccCc
Q 003881 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (789)
Q Consensus 372 ~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~ 414 (789)
+.=+||||..|++.+......++.++++.|++.+.++.|-+-|
T Consensus 129 ~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 129 GPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred CceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 3458999999999999888899999999999999999998865
No 389
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=87.70 E-value=3.6 Score=46.29 Aligned_cols=45 Identities=22% Similarity=0.368 Sum_probs=26.7
Q ss_pred cCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHH
Q 003881 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRK 416 (789)
Q Consensus 370 l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~ 416 (789)
.....++||||+|+|.... .+.+.+++..-++.. ++++.+|-+..
T Consensus 115 ~~~~kViiIDead~m~~~a-anaLLk~LEep~~~~-~fIL~a~~~~~ 159 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERA-ANALLKAVEEPPPRT-VWLLCAPSPED 159 (394)
T ss_pred cCCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCC-eEEEEECChHH
Confidence 3567899999999985432 244555555544444 44555554433
No 390
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.70 E-value=3.4 Score=48.44 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=25.2
Q ss_pred cCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEe
Q 003881 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 370 l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~S 410 (789)
..+..++||||+|+|....+ +.+.+.+...+....+|+.+
T Consensus 117 ~~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 35678999999998765332 34455555545555555544
No 391
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=87.58 E-value=7.5 Score=42.17 Aligned_cols=129 Identities=20% Similarity=0.300 Sum_probs=73.4
Q ss_pred EEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcC-c-HHHHHHHHHHHHHHhhhcCCeEEEE-ECCCChHHH
Q 003881 265 IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP-T-RELAHQIYLETKKFAKSHGIRVSAV-YGGMSKLDQ 341 (789)
Q Consensus 265 vll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~P-t-reLa~Qi~~~~~~~~~~~~i~v~~~-~gg~~~~~~ 341 (789)
+++++-.|+|||.. +.=|++.+.+ .|.++|+.+- | |+-| .++++.|....++.++.- +|+.+-.-
T Consensus 142 il~vGVNG~GKTTT--IaKLA~~l~~------~g~~VllaA~DTFRAaA---iEQL~~w~er~gv~vI~~~~G~DpAaV- 209 (340)
T COG0552 142 ILFVGVNGVGKTTT--IAKLAKYLKQ------QGKSVLLAAGDTFRAAA---IEQLEVWGERLGVPVISGKEGADPAAV- 209 (340)
T ss_pred EEEEecCCCchHhH--HHHHHHHHHH------CCCeEEEEecchHHHHH---HHHHHHHHHHhCCeEEccCCCCCcHHH-
Confidence 67789999999986 4455555543 3566666543 3 3433 345666766667777652 23322211
Q ss_pred HHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccC-CChHHHHHHHhhcCCCc------eEEEEeccCc
Q 003881 342 FKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDR------QTLLFSATMP 414 (789)
Q Consensus 342 ~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~-~f~~~i~~il~~l~~~~------q~ll~SAT~~ 414 (789)
..+.++.. .-..+++|++|=|=||.+. +.-..+.+|.+-+.+.. -++.+=||.-
T Consensus 210 -----------------afDAi~~A--kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttG 270 (340)
T COG0552 210 -----------------AFDAIQAA--KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTG 270 (340)
T ss_pred -----------------HHHHHHHH--HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccC
Confidence 12222211 2345677888888887653 24445556655554433 3444478887
Q ss_pred HHHHHHHHHH
Q 003881 415 RKVEKLAREI 424 (789)
Q Consensus 415 ~~i~~l~~~~ 424 (789)
.+...-++.|
T Consensus 271 qnal~QAk~F 280 (340)
T COG0552 271 QNALSQAKIF 280 (340)
T ss_pred hhHHHHHHHH
Confidence 6655555555
No 392
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=87.57 E-value=4.1 Score=46.30 Aligned_cols=116 Identities=18% Similarity=0.157 Sum_probs=55.2
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHH
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~ 340 (789)
.|.-+++.|.+|+|||.. ++-+..++.. ..+..++++. .-.-+.|+...+... ..++....+..|.-...
T Consensus 193 ~g~liviag~pg~GKT~~-al~ia~~~a~------~~g~~v~~fS-lEm~~~~l~~Rl~~~--~~~v~~~~~~~~~l~~~ 262 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTL-ALNIAENVAL------REGKPVLFFS-LEMSAEQLGERLLAS--KSGINTGNIRTGRFNDS 262 (421)
T ss_pred CCceEEEEeCCCCCHHHH-HHHHHHHHHH------hCCCcEEEEE-CCCCHHHHHHHHHHH--HcCCCHHHHhcCCCCHH
Confidence 345678899999999974 5555544431 1234466665 222233333322221 12333222222222222
Q ss_pred HHHHH------hcCCcEEEe-----ChHHHHHHHhhcccccCceeEEEEeccchhcc
Q 003881 341 QFKEL------KAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMFD 386 (789)
Q Consensus 341 ~~~~l------~~~~dIiV~-----Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~ 386 (789)
.+..+ ..+..+.|. |...+...+++-......+++||||=.|.|..
T Consensus 263 ~~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~ 319 (421)
T TIGR03600 263 DFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAP 319 (421)
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCC
Confidence 22221 123455553 33444443332211222588999999887653
No 393
>PRK04841 transcriptional regulator MalT; Provisional
Probab=87.49 E-value=2.8 Score=52.45 Aligned_cols=44 Identities=16% Similarity=0.309 Sum_probs=34.6
Q ss_pred CceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEeccCc
Q 003881 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (789)
Q Consensus 371 ~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~ 414 (789)
..--+||||++|.+-+......+..++...++..++|+.|-+.|
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 34457999999998665556678888888888899988887754
No 394
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=87.47 E-value=6 Score=49.28 Aligned_cols=16 Identities=38% Similarity=0.499 Sum_probs=14.5
Q ss_pred CCEEEEccCCChhhHH
Q 003881 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll~a~TGsGKTla 278 (789)
.++|+++++|+|||..
T Consensus 195 ~n~lL~G~pGvGKT~l 210 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAI 210 (852)
T ss_pred CceEEEcCCCCCHHHH
Confidence 5899999999999975
No 395
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=87.28 E-value=1.1 Score=54.45 Aligned_cols=62 Identities=19% Similarity=0.318 Sum_probs=52.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHHcC-----Cceee-ccCCCCHHHHHHHHHHhhcCCcceEEeehhh
Q 003881 469 DDGDVLVFASKKTTVDEIESQLAQKG-----FKAAA-LHGDKDQASRMEILQKFKSGVYHVLIATDVA 530 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g-----~~v~~-lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~ 530 (789)
.+.+++|.+||..-+.++++.|.... +.+.. +|+.|+..+++.++++|.+|.++|||+|...
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 34799999999998888888887642 44333 9999999999999999999999999999653
No 396
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.23 E-value=4.8 Score=46.44 Aligned_cols=16 Identities=31% Similarity=0.324 Sum_probs=13.5
Q ss_pred CEEEEccCCChhhHHH
Q 003881 264 DIIGIAKTGSGKTAAF 279 (789)
Q Consensus 264 dvll~a~TGsGKTla~ 279 (789)
.+|+++|.|+|||..+
T Consensus 38 ~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 38 AYIFAGPRGTGKTTVA 53 (472)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3699999999999753
No 397
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.17 E-value=1.5 Score=51.91 Aligned_cols=139 Identities=18% Similarity=0.258 Sum_probs=76.3
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEE-EcCcHHHHHHHHHHHHHHhhhcCCeEE---------
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI-CAPTRELAHQIYLETKKFAKSHGIRVS--------- 330 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLI-l~PtreLa~Qi~~~~~~~~~~~~i~v~--------- 330 (789)
.|+.+.+++|.|+|||.+ +.+|.+++.- ...++++ =+|-+++-.+|.+ +.....+-..+
T Consensus 493 pGe~vALVGPSGsGKSTi--asLL~rfY~P------tsG~IllDG~~i~~~~~~~lr---~~Ig~V~QEPvLFs~sI~eN 561 (716)
T KOG0058|consen 493 PGEVVALVGPSGSGKSTI--ASLLLRFYDP------TSGRILLDGVPISDINHKYLR---RKIGLVGQEPVLFSGSIREN 561 (716)
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHHhcCC------CCCeEEECCeehhhcCHHHHH---HHeeeeeccceeecccHHHH
Confidence 577899999999999975 5567777652 2333333 3666666655543 22111111111
Q ss_pred EEECCCCh-HH-------------HHHHHhcCCcEEEeChHHHHHHHhhc-----ccccCceeEEEEeccchhccCCChH
Q 003881 331 AVYGGMSK-LD-------------QFKELKAGCEIVIATPGRLIDMLKMK-----ALTMSRVTYLVLDEADRMFDLGFEP 391 (789)
Q Consensus 331 ~~~gg~~~-~~-------------~~~~l~~~~dIiV~Tp~~L~~~l~~~-----~~~l~~i~~lVvDEah~m~~~~f~~ 391 (789)
..||-... .+ .+..+..+++-.|+.-|..+.-=++. .--+++-.+||+|||---+|..-+.
T Consensus 562 I~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~ 641 (716)
T KOG0058|consen 562 IAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEY 641 (716)
T ss_pred HhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHH
Confidence 11221111 01 11122233444444443332111111 1125667889999999999988889
Q ss_pred HHHHHHhhcCCCceEEEEec
Q 003881 392 QIRSIVGQIRPDRQTLLFSA 411 (789)
Q Consensus 392 ~i~~il~~l~~~~q~ll~SA 411 (789)
.++..+..+..++ +++.=|
T Consensus 642 lVq~aL~~~~~~r-TVlvIA 660 (716)
T KOG0058|consen 642 LVQEALDRLMQGR-TVLVIA 660 (716)
T ss_pred HHHHHHHHhhcCC-eEEEEe
Confidence 9999998887774 444433
No 398
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=87.16 E-value=1.8 Score=50.04 Aligned_cols=53 Identities=17% Similarity=0.285 Sum_probs=33.8
Q ss_pred CCCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHH
Q 003881 223 PVKTFEDCGFSTQLMHAISKQ---GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 223 pi~sf~~~~l~~~l~~~l~~~---g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla 278 (789)
|-.+|++.|--..+...|... .+..|--++.-++.. -..+|+|+|.|+|||+.
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~---PsGvLL~GPPGCGKTLl 561 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDA---PSGVLLCGPPGCGKTLL 561 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCC---CCceEEeCCCCccHHHH
Confidence 457899998777776666432 233333333332211 24699999999999974
No 399
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=87.13 E-value=2.3 Score=47.42 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=31.1
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHH
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~ 321 (789)
|.-+++.+++|+|||.. ++-++..+.. .+.++|++.-. +-..|+...+.++
T Consensus 82 GslvLI~G~pG~GKStL-llq~a~~~a~-------~g~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 82 GSVILIGGDPGIGKSTL-LLQVAARLAK-------RGGKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred CeEEEEEeCCCCCHHHH-HHHHHHHHHh-------cCCeEEEEECC-cCHHHHHHHHHHc
Confidence 45688899999999975 4434444322 23457777653 4445665555444
No 400
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.12 E-value=1.6 Score=50.65 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=16.7
Q ss_pred EEEEccCCChhhHHHHHHHHHHHh
Q 003881 265 IIGIAKTGSGKTAAFVLPMIVHIM 288 (789)
Q Consensus 265 vll~a~TGsGKTla~llpil~~l~ 288 (789)
+|+++|.|+|||.++ ..+..++.
T Consensus 39 ~Lf~GppGtGKTTlA-~~lA~~l~ 61 (504)
T PRK14963 39 YLFSGPRGVGKTTTA-RLIAMAVN 61 (504)
T ss_pred EEEECCCCCCHHHHH-HHHHHHHh
Confidence 599999999999863 34444443
No 401
>PRK08506 replicative DNA helicase; Provisional
Probab=86.85 E-value=3.7 Score=47.40 Aligned_cols=112 Identities=19% Similarity=0.178 Sum_probs=55.8
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHH
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~ 341 (789)
|.-+++.|.+|+|||. |++-++.++.. .+..++|+.. -.-+.|+...+.... .++....+..+.-....
T Consensus 192 G~LivIaarpg~GKT~-fal~ia~~~~~-------~g~~V~~fSl-EMs~~ql~~Rlla~~--s~v~~~~i~~~~l~~~e 260 (472)
T PRK08506 192 GDLIIIAARPSMGKTT-LCLNMALKALN-------QDKGVAFFSL-EMPAEQLMLRMLSAK--TSIPLQNLRTGDLDDDE 260 (472)
T ss_pred CceEEEEcCCCCChHH-HHHHHHHHHHh-------cCCcEEEEeC-cCCHHHHHHHHHHHh--cCCCHHHHhcCCCCHHH
Confidence 3457888999999997 45555555543 2344666533 234445544433221 12222112212211222
Q ss_pred HH-------HHhcCCcEEEe-----ChHHHHHHHhhcccccCceeEEEEeccchhc
Q 003881 342 FK-------ELKAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (789)
Q Consensus 342 ~~-------~l~~~~dIiV~-----Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~ 385 (789)
+. .+. ...+.|. |+..+...+++-......+++||||=.+.|.
T Consensus 261 ~~~~~~a~~~l~-~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 261 WERLSDACDELS-KKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHHHHHHHH-cCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 22 222 2345553 4555554443321112357899999999775
No 402
>PRK05973 replicative DNA helicase; Provisional
Probab=86.81 E-value=2.7 Score=43.80 Aligned_cols=65 Identities=20% Similarity=0.231 Sum_probs=38.1
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHH
Q 003881 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 247 ~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~ 321 (789)
.+||... ..--+..|.-+++.|++|+|||+. .+-++..... +|..++|+.- -+-..|+.+.+..+
T Consensus 50 ~~~p~~~-l~GGl~~Gsl~LIaG~PG~GKT~l-alqfa~~~a~-------~Ge~vlyfSl-Ees~~~i~~R~~s~ 114 (237)
T PRK05973 50 ATTPAEE-LFSQLKPGDLVLLGARPGHGKTLL-GLELAVEAMK-------SGRTGVFFTL-EYTEQDVRDRLRAL 114 (237)
T ss_pred CCCCHHH-hcCCCCCCCEEEEEeCCCCCHHHH-HHHHHHHHHh-------cCCeEEEEEE-eCCHHHHHHHHHHc
Confidence 4566332 333444566788999999999975 4444444332 2455677643 23345666666555
No 403
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=86.75 E-value=0.54 Score=48.47 Aligned_cols=14 Identities=36% Similarity=0.477 Sum_probs=12.1
Q ss_pred EEEEccCCChhhHH
Q 003881 265 IIGIAKTGSGKTAA 278 (789)
Q Consensus 265 vll~a~TGsGKTla 278 (789)
+++.|..|+|||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47889999999974
No 404
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.60 E-value=7.2 Score=44.60 Aligned_cols=137 Identities=20% Similarity=0.280 Sum_probs=74.2
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHH----HHHcC--------CCEEEEccCCChhhHHHHHHHHHHHhcCccccccC
Q 003881 230 CGFSTQLMHAISKQGYEKPTSIQCQALP----IILSG--------RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEE 297 (789)
Q Consensus 230 ~~l~~~l~~~l~~~g~~~ptpiQ~~~i~----~il~g--------rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~ 297 (789)
+|.+++.++.+...|...-.|.=.+.+. .+.+- ..+|+.+|.|||||..+.-.++ ...
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~----------~S~ 563 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIAL----------SSD 563 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHh----------hcC
Confidence 5777777777777765443333333332 22211 3589999999999964332222 134
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEE
Q 003881 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLV 377 (789)
Q Consensus 298 gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lV 377 (789)
-|.+=|+.|..-.. .+....+..+.+ .+.+. .-+.+.+||
T Consensus 564 FPFvKiiSpe~miG------------------------~sEsaKc~~i~k----------~F~DA------YkS~lsiiv 603 (744)
T KOG0741|consen 564 FPFVKIISPEDMIG------------------------LSESAKCAHIKK----------IFEDA------YKSPLSIIV 603 (744)
T ss_pred CCeEEEeChHHccC------------------------ccHHHHHHHHHH----------HHHHh------hcCcceEEE
Confidence 67788888853221 111111111110 01111 134578899
Q ss_pred EeccchhccCC-----ChHHHHHH----HhhcCC-CceEEEEeccCcHH
Q 003881 378 LDEADRMFDLG-----FEPQIRSI----VGQIRP-DRQTLLFSATMPRK 416 (789)
Q Consensus 378 vDEah~m~~~~-----f~~~i~~i----l~~l~~-~~q~ll~SAT~~~~ 416 (789)
||+..+++||. |.+.+.+. +...+| .++++.|..|-...
T Consensus 604 vDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~ 652 (744)
T KOG0741|consen 604 VDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRRE 652 (744)
T ss_pred EcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHH
Confidence 99999999974 44444433 333343 45667776665433
No 405
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.51 E-value=2.8 Score=50.06 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=17.6
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHh
Q 003881 263 RDIIGIAKTGSGKTAAFVLPMIVHIM 288 (789)
Q Consensus 263 rdvll~a~TGsGKTla~llpil~~l~ 288 (789)
+.+|+.++.|+|||.. +..+...++
T Consensus 39 ~a~Lf~Gp~G~GKttl-A~~lAk~L~ 63 (620)
T PRK14948 39 PAYLFTGPRGTGKTSS-ARILAKSLN 63 (620)
T ss_pred ceEEEECCCCCChHHH-HHHHHHHhc
Confidence 4579999999999976 333444443
No 406
>PRK06904 replicative DNA helicase; Validated
Probab=86.34 E-value=9.1 Score=44.21 Aligned_cols=116 Identities=16% Similarity=0.116 Sum_probs=56.9
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECC-CChHH
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGG-MSKLD 340 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg-~~~~~ 340 (789)
|.=+|+.|.+|+|||. |++-+..++... .+..++|+.. -.-..|+...+.... .++....+..| .-..+
T Consensus 221 G~LiiIaarPg~GKTa-falnia~~~a~~------~g~~Vl~fSl-EMs~~ql~~Rlla~~--s~v~~~~i~~g~~l~~~ 290 (472)
T PRK06904 221 SDLIIVAARPSMGKTT-FAMNLCENAAMA------SEKPVLVFSL-EMPAEQIMMRMLASL--SRVDQTKIRTGQNLDQQ 290 (472)
T ss_pred CcEEEEEeCCCCChHH-HHHHHHHHHHHh------cCCeEEEEec-cCCHHHHHHHHHHhh--CCCCHHHhccCCCCCHH
Confidence 4456778999999997 455555544321 2334666543 234445544433322 12222222222 11222
Q ss_pred HHH-------HHhcCCcEEE-----eChHHHHHHHhhcccccCceeEEEEeccchhccC
Q 003881 341 QFK-------ELKAGCEIVI-----ATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL 387 (789)
Q Consensus 341 ~~~-------~l~~~~dIiV-----~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~ 387 (789)
.+. .+.....+.| .|+..+...+++-......+++||||=.+.|...
T Consensus 291 e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~ 349 (472)
T PRK06904 291 DWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAP 349 (472)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCC
Confidence 222 2323344666 3455554444322111235789999998877543
No 407
>PHA00012 I assembly protein
Probab=86.31 E-value=11 Score=41.06 Aligned_cols=56 Identities=25% Similarity=0.274 Sum_probs=33.1
Q ss_pred CceeEEEEeccchhccCC-Ch----HHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhC
Q 003881 371 SRVTYLVLDEADRMFDLG-FE----PQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILS 426 (789)
Q Consensus 371 ~~i~~lVvDEah~m~~~~-f~----~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~ 426 (789)
..-.++||||||..++.. +. ..+...+...+...-.++|-.--+..+...++..+.
T Consensus 80 p~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh~G~DvilITQ~ps~VDs~IR~ll~ 140 (361)
T PHA00012 80 SKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHARKLGWDIIFIIQDISIMDKQAREALA 140 (361)
T ss_pred CCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhccCCceEEEEcCCHHHHhHHHHHhhh
Confidence 456789999999887632 22 335555666555544444444444566666655443
No 408
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=86.21 E-value=1.1 Score=44.65 Aligned_cols=50 Identities=20% Similarity=0.347 Sum_probs=28.4
Q ss_pred HHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHH
Q 003881 256 LPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI 314 (789)
Q Consensus 256 i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi 314 (789)
..++-.++++++.+++|+|||.. +.++..+++. .+..+++ +++.+|...+
T Consensus 41 ~~~~~~~~~l~l~G~~G~GKThL-a~ai~~~~~~-------~g~~v~f-~~~~~L~~~l 90 (178)
T PF01695_consen 41 LEFIENGENLILYGPPGTGKTHL-AVAIANEAIR-------KGYSVLF-ITASDLLDEL 90 (178)
T ss_dssp H-S-SC--EEEEEESTTSSHHHH-HHHHHHHHHH-------TT--EEE-EEHHHHHHHH
T ss_pred CCCcccCeEEEEEhhHhHHHHHH-HHHHHHHhcc-------CCcceeE-eecCceeccc
Confidence 34455778999999999999975 3334444443 2444555 4555666544
No 409
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=86.04 E-value=6.2 Score=43.24 Aligned_cols=41 Identities=15% Similarity=0.151 Sum_probs=26.3
Q ss_pred cCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEec
Q 003881 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSA 411 (789)
Q Consensus 370 l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SA 411 (789)
....+++|+|++|.|-.. ....+.+++...+....+|+.|.
T Consensus 111 ~~~~kV~iiEp~~~Ld~~-a~naLLk~LEep~~~~~~Ilvth 151 (325)
T PRK08699 111 RGGLRVILIHPAESMNLQ-AANSLLKVLEEPPPQVVFLLVSH 151 (325)
T ss_pred cCCceEEEEechhhCCHH-HHHHHHHHHHhCcCCCEEEEEeC
Confidence 356788999999986443 45566667776654544444443
No 410
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.88 E-value=4.8 Score=47.88 Aligned_cols=41 Identities=12% Similarity=0.256 Sum_probs=23.1
Q ss_pred cCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEecc
Q 003881 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT 412 (789)
Q Consensus 370 l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT 412 (789)
+....+|||||+|.|.... ...+...+...+.. .++++.++
T Consensus 118 ~~~~kVvIIDEa~~L~~~a-~naLLk~LEepp~~-tv~Il~t~ 158 (585)
T PRK14950 118 LARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPH-AIFILATT 158 (585)
T ss_pred cCCeEEEEEeChHhCCHHH-HHHHHHHHhcCCCC-eEEEEEeC
Confidence 4568899999999875432 22333444443333 34444444
No 411
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=85.85 E-value=4.6 Score=44.49 Aligned_cols=40 Identities=10% Similarity=0.023 Sum_probs=26.8
Q ss_pred cHHHHHHHHHHHcC-----CCEEEEccCCChhhHHHHHHHHHHHhc
Q 003881 249 TSIQCQALPIILSG-----RDIIGIAKTGSGKTAAFVLPMIVHIMD 289 (789)
Q Consensus 249 tpiQ~~~i~~il~g-----rdvll~a~TGsGKTla~llpil~~l~~ 289 (789)
.|+|...+..+.+. +-+|+.++.|.||+..+ ..+...++.
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA-~~~A~~LlC 47 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFA-QHLAQGLLC 47 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHH-HHHHHHHcC
Confidence 46677777666532 35789999999999753 444455544
No 412
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=85.84 E-value=0.58 Score=52.55 Aligned_cols=56 Identities=23% Similarity=0.265 Sum_probs=39.0
Q ss_pred CEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEE
Q 003881 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVY 333 (789)
Q Consensus 264 dvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~ 333 (789)
+++++|+||+|||..+++|.+... ...+||+=|--++........++. +.+|.++-
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~----------~~s~vv~D~Kge~~~~t~~~r~~~----G~~V~v~n 56 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW----------PGSVVVLDPKGENFELTSEHRRAL----GRKVFVFD 56 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC----------CCCEEEEccchhHHHHHHHHHHHc----CCeEEEEc
Confidence 579999999999999888876532 234788889888886555444432 55554443
No 413
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=85.84 E-value=2.6 Score=44.23 Aligned_cols=20 Identities=30% Similarity=0.302 Sum_probs=17.1
Q ss_pred HHcCCCEEEEccCCChhhHH
Q 003881 259 ILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 259 il~grdvll~a~TGsGKTla 278 (789)
+-.|+.+++.++.|+|||..
T Consensus 13 i~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34788999999999999963
No 414
>PRK10865 protein disaggregation chaperone; Provisional
Probab=85.60 E-value=8.2 Score=48.06 Aligned_cols=16 Identities=38% Similarity=0.499 Sum_probs=14.4
Q ss_pred CCEEEEccCCChhhHH
Q 003881 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll~a~TGsGKTla 278 (789)
.++|+.+++|+|||..
T Consensus 200 ~n~lL~G~pGvGKT~l 215 (857)
T PRK10865 200 NNPVLIGEPGVGKTAI 215 (857)
T ss_pred CceEEECCCCCCHHHH
Confidence 4899999999999975
No 415
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.58 E-value=2.3 Score=49.19 Aligned_cols=76 Identities=22% Similarity=0.332 Sum_probs=62.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeeh-hhhcc------C-CCCCcc
Q 003881 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAARG------L-DIKSIK 540 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~~rG------l-DI~~v~ 540 (789)
..+.+||.+|+++-+......|...++.+..++++.+..++..++.....+..+||++|. .+... + ....+.
T Consensus 50 ~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~ 129 (470)
T TIGR00614 50 SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGIT 129 (470)
T ss_pred cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcC
Confidence 356899999999999988899999999999999999999999999999999999999995 22221 2 455667
Q ss_pred EEEE
Q 003881 541 SVVN 544 (789)
Q Consensus 541 ~VI~ 544 (789)
+||.
T Consensus 130 ~iVi 133 (470)
T TIGR00614 130 LIAV 133 (470)
T ss_pred EEEE
Confidence 7664
No 416
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=85.46 E-value=4.4 Score=42.83 Aligned_cols=37 Identities=16% Similarity=0.067 Sum_probs=24.1
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEc
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~ 305 (789)
.|.-+++.+++|+|||.. ++-++.+.+. .+.+++++.
T Consensus 35 ~gs~~lI~G~pGtGKT~l-~~qf~~~~a~-------~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLM-VEQFAVTQAS-------RGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHH-HHHHHHHHHh-------CCCcEEEEE
Confidence 345688999999999974 4444443322 245577775
No 417
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=85.27 E-value=0.88 Score=52.50 Aligned_cols=57 Identities=32% Similarity=0.458 Sum_probs=40.6
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEE
Q 003881 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVY 333 (789)
Q Consensus 263 rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~ 333 (789)
.+++++|+||||||..+++|.+... .+ -+||+=|--+|.......+++. +.+|.++-
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~---------~~-s~iV~D~KgEl~~~t~~~r~~~----G~~V~vld 101 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY---------PG-SMIVTDPKGELYEKTAGYRKKR----GYKVYVLD 101 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc---------cC-CEEEEECCCcHHHHHHHHHHHC----CCEEEEee
Confidence 5799999999999999999987432 12 4788889988887655544443 44554443
No 418
>PRK13764 ATPase; Provisional
Probab=85.26 E-value=1.8 Score=51.04 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=20.3
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHH
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l 287 (789)
..+++|++++||||||.. +-+++.++
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i 281 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFY 281 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 457899999999999974 55556565
No 419
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=85.25 E-value=6.2 Score=43.15 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=26.5
Q ss_pred cCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEec
Q 003881 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSA 411 (789)
Q Consensus 370 l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SA 411 (789)
....+++|||+||+|-.. -.+.+.++++.-++...+|+.|.
T Consensus 105 ~g~~KV~iI~~a~~m~~~-AaNaLLKtLEEPp~~~~fiL~t~ 145 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEA-AANALLKTLEEPRPNTYFLLQAD 145 (325)
T ss_pred cCCceEEEEechhhhCHH-HHHHHHHHhcCCCCCeEEEEEEC
Confidence 356789999999997653 24456666666444554444443
No 420
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=85.24 E-value=0.53 Score=55.73 Aligned_cols=11 Identities=27% Similarity=0.362 Sum_probs=6.7
Q ss_pred ccccCCCCCCC
Q 003881 29 RLYVPPSSRYS 39 (789)
Q Consensus 29 ~~~~~~~~~~~ 39 (789)
+.|-++++|-.
T Consensus 1393 r~yEIGR~r~~ 1403 (1516)
T KOG1832|consen 1393 RMYEIGRRRPT 1403 (1516)
T ss_pred hhhhhcccCCC
Confidence 44556766665
No 421
>PRK06620 hypothetical protein; Validated
Probab=85.20 E-value=4.3 Score=41.65 Aligned_cols=106 Identities=12% Similarity=0.092 Sum_probs=58.6
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhhcC-CeEEEEECCC--ChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEE
Q 003881 301 GVICAPTRELAHQIYLETKKFAKSHG-IRVSAVYGGM--SKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLV 377 (789)
Q Consensus 301 vLIl~PtreLa~Qi~~~~~~~~~~~~-i~v~~~~gg~--~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lV 377 (789)
-.|+.+.-.+|..+...+.+...... .+..+++|.. .+....+.+.......+.+...... ..+...++|+
T Consensus 17 ~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~------~~~~~~d~ll 90 (214)
T PRK06620 17 EFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNE------EILEKYNAFI 90 (214)
T ss_pred hhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhch------hHHhcCCEEE
Confidence 47888977777776665543111111 1557888854 4555555555545555544322211 1134567899
Q ss_pred EeccchhccCCChHHHHHHHhhcCCCceEEEEecc-CcHH
Q 003881 378 LDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT-MPRK 416 (789)
Q Consensus 378 vDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT-~~~~ 416 (789)
|||+|.+.+ ..+..+++.+......++++++ .|+.
T Consensus 91 iDdi~~~~~----~~lf~l~N~~~e~g~~ilits~~~p~~ 126 (214)
T PRK06620 91 IEDIENWQE----PALLHIFNIINEKQKYLLLTSSDKSRN 126 (214)
T ss_pred EeccccchH----HHHHHHHHHHHhcCCEEEEEcCCCccc
Confidence 999996422 3556666666544334455555 5554
No 422
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=85.16 E-value=1.5 Score=47.36 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=14.1
Q ss_pred CCEEEEccCCChhhHH
Q 003881 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll~a~TGsGKTla 278 (789)
.++++++|.|+|||..
T Consensus 31 ~~~ll~Gp~G~GKT~l 46 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTL 46 (305)
T ss_pred CeEEEECCCCCCHHHH
Confidence 4699999999999964
No 423
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=85.15 E-value=1 Score=44.79 Aligned_cols=43 Identities=16% Similarity=0.335 Sum_probs=30.9
Q ss_pred cCceeEEEEeccchhccCCChHHHHHHHhhcCCC-ceEEEEecc
Q 003881 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD-RQTLLFSAT 412 (789)
Q Consensus 370 l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~-~q~ll~SAT 412 (789)
+....++++||...-++......+..++..+... .++|+.|--
T Consensus 114 ~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 114 IKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 3567889999999888877666777776665433 666666654
No 424
>COG1485 Predicted ATPase [General function prediction only]
Probab=85.14 E-value=14 Score=40.48 Aligned_cols=116 Identities=13% Similarity=0.134 Sum_probs=67.3
Q ss_pred HHHHHHcC-----CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeE
Q 003881 255 ALPIILSG-----RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRV 329 (789)
Q Consensus 255 ~i~~il~g-----rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v 329 (789)
++.|++.. +.+-+.++.|.|||. ++-++-+.+... + -.-++....+..+++++..+.
T Consensus 53 ~l~~lf~r~~~~~~GlYl~GgVGrGKT~--LMD~Fy~~lp~~---~------k~R~HFh~FM~~vH~~l~~l~------- 114 (367)
T COG1485 53 ALGWLFGRDHGPVRGLYLWGGVGRGKTM--LMDLFYESLPGE---R------KRRLHFHRFMARVHQRLHTLQ------- 114 (367)
T ss_pred ccccccccCCCCCceEEEECCCCccHHH--HHHHHHhhCCcc---c------cccccHHHHHHHHHHHHHHHc-------
Confidence 55555544 678889999999994 555555543221 0 134577788888888888774
Q ss_pred EEEECCCC-hHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhh-cCCCceEE
Q 003881 330 SAVYGGMS-KLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQ-IRPDRQTL 407 (789)
Q Consensus 330 ~~~~gg~~-~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~-l~~~~q~l 407 (789)
|... ..... ..+ .....+|+|||.|- .|.+-.-.+..+++. +.....++
T Consensus 115 ----g~~dpl~~iA-----------------~~~-------~~~~~vLCfDEF~V-tDI~DAMiL~rL~~~Lf~~GV~lv 165 (367)
T COG1485 115 ----GQTDPLPPIA-----------------DEL-------AAETRVLCFDEFEV-TDIADAMILGRLLEALFARGVVLV 165 (367)
T ss_pred ----CCCCccHHHH-----------------HHH-------HhcCCEEEeeeeee-cChHHHHHHHHHHHHHHHCCcEEE
Confidence 1110 11111 111 33566799999993 222112223333333 34578888
Q ss_pred EEeccCcHHH
Q 003881 408 LFSATMPRKV 417 (789)
Q Consensus 408 l~SAT~~~~i 417 (789)
..|-|.|.++
T Consensus 166 aTSN~~P~~L 175 (367)
T COG1485 166 ATSNTAPDNL 175 (367)
T ss_pred EeCCCChHHh
Confidence 9999988764
No 425
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=85.12 E-value=4.9 Score=45.85 Aligned_cols=112 Identities=19% Similarity=0.137 Sum_probs=55.5
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHH
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~ 341 (789)
|.-+++.|.+|+|||. |++-++.++.. ..+..++++.. -.-..|+...+..... ++....+..|.-....
T Consensus 195 G~l~vi~g~pg~GKT~-~~l~~a~~~a~------~~g~~vl~~Sl-Em~~~~i~~R~~~~~~--~v~~~~~~~g~l~~~~ 264 (434)
T TIGR00665 195 SDLIILAARPSMGKTA-FALNIAENAAI------KEGKPVAFFSL-EMSAEQLAMRMLSSES--RVDSQKLRTGKLSDED 264 (434)
T ss_pred CeEEEEEeCCCCChHH-HHHHHHHHHHH------hCCCeEEEEeC-cCCHHHHHHHHHHHhc--CCCHHHhccCCCCHHH
Confidence 4557889999999996 45555555432 12344666643 2333444444333221 2222222222212222
Q ss_pred H-------HHHhcCCcEEE-----eChHHHHHHHhhcccccCceeEEEEeccchhc
Q 003881 342 F-------KELKAGCEIVI-----ATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (789)
Q Consensus 342 ~-------~~l~~~~dIiV-----~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~ 385 (789)
+ ..+. ...+.| .|+..+...+..-... ..+++||||=.+.|.
T Consensus 265 ~~~~~~a~~~l~-~~~l~i~d~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 265 WEKLTSAAGKLS-EAPLYIDDTPGLTITELRAKARRLKRE-HGLGLIVIDYLQLMS 318 (434)
T ss_pred HHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcC
Confidence 2 1222 234554 2445555444322211 247899999998774
No 426
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=85.08 E-value=4.2 Score=48.19 Aligned_cols=72 Identities=21% Similarity=0.381 Sum_probs=52.1
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHH---HHhc-CCcEEEeChHHHHHHHhhcccccCc
Q 003881 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELKA-GCEIVIATPGRLIDMLKMKALTMSR 372 (789)
Q Consensus 297 ~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~---~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~ 372 (789)
.+.++||.|+|+..|.++++.+.+. ++.+..++|+.+..+... .+.. ..+||||| +++. .-+++..
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaT-----dv~a-rGIDip~ 325 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT-----DVAA-RGLHIDG 325 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----hhhh-cCCCccC
Confidence 3567999999999999988877654 789999999987655433 2333 47999999 3443 3346777
Q ss_pred eeEEEE
Q 003881 373 VTYLVL 378 (789)
Q Consensus 373 i~~lVv 378 (789)
+++||.
T Consensus 326 V~~VIn 331 (572)
T PRK04537 326 VKYVYN 331 (572)
T ss_pred CCEEEE
Confidence 777764
No 427
>PRK04328 hypothetical protein; Provisional
Probab=84.80 E-value=5.4 Score=41.86 Aligned_cols=52 Identities=19% Similarity=0.188 Sum_probs=31.6
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHH
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~ 321 (789)
.|.-+++.+++|+|||+..+--+...+ + .+-.+|++. +.+-..++.+.+..+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~-~-------~ge~~lyis-~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGL-Q-------MGEPGVYVA-LEEHPVQVRRNMRQF 73 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-h-------cCCcEEEEE-eeCCHHHHHHHHHHc
Confidence 346788899999999975333333333 2 244566665 445555666666555
No 428
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=84.73 E-value=3.6 Score=46.35 Aligned_cols=54 Identities=20% Similarity=0.232 Sum_probs=32.7
Q ss_pred CCCCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHH
Q 003881 222 RPVKTFEDCGFSTQLMHAISKQ---GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~---g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla 278 (789)
.|-.+|.+++-.+...+.|... .+..|.-++...+ ...+.+++.+|+|+|||+.
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl---~~pkgvLL~GppGTGKT~L 195 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGI---DPPRGVLLYGPPGTGKTML 195 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCC---CCCceEEEECCCCCCHHHH
Confidence 4456788887666555555432 2233332222221 2347899999999999975
No 429
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=84.70 E-value=0.85 Score=48.46 Aligned_cols=26 Identities=50% Similarity=0.892 Sum_probs=13.0
Q ss_pred cCCCCCCCCCCCCCCCCCCCCcccCC
Q 003881 618 RKGGGKKGKGRGGAGRGVRGVDFGLG 643 (789)
Q Consensus 618 r~~g~~~g~g~gggg~g~~g~~~g~g 643 (789)
+.+|+..|+|++|||++++|.+.|+|
T Consensus 429 rdggg~~gggr~gggr~gggrgrggg 454 (465)
T KOG3973|consen 429 RDGGGRDGGGRDGGGRDGGGRGRGGG 454 (465)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 34444455555556655544444433
No 430
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=84.67 E-value=5 Score=40.20 Aligned_cols=71 Identities=18% Similarity=0.274 Sum_probs=51.7
Q ss_pred CCCEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeeh-----hhh-ccCCCCCc
Q 003881 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-----VAA-RGLDIKSI 539 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-----v~~-rGlDI~~v 539 (789)
..++||.+++...+...+..+... ++.+..++|+.+..+....+. +...|+|+|. .+. .-+++..+
T Consensus 69 ~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~l 144 (203)
T cd00268 69 GPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSKV 144 (203)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhhC
Confidence 457999999999888877766554 678889999998766554433 6688999994 222 23667778
Q ss_pred cEEEE
Q 003881 540 KSVVN 544 (789)
Q Consensus 540 ~~VI~ 544 (789)
.+||.
T Consensus 145 ~~lIv 149 (203)
T cd00268 145 KYLVL 149 (203)
T ss_pred CEEEE
Confidence 87774
No 431
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=84.63 E-value=5.6 Score=46.43 Aligned_cols=40 Identities=13% Similarity=0.157 Sum_probs=26.4
Q ss_pred cCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEe
Q 003881 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 370 l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~S 410 (789)
.....++||||||+|.... ...+.+.+...++...+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 4578999999999876432 234555666655556555554
No 432
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=84.35 E-value=1.4 Score=51.49 Aligned_cols=42 Identities=21% Similarity=0.300 Sum_probs=34.4
Q ss_pred CCcHHHHHHHHHHH----cCCCEEEEccCCChhhHHHHHHHHHHHh
Q 003881 247 KPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (789)
Q Consensus 247 ~ptpiQ~~~i~~il----~grdvll~a~TGsGKTla~llpil~~l~ 288 (789)
+|+.||.+.+..++ .|+-.|+..|||+|||+..+-.+|.++-
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~ 60 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLR 60 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHH
Confidence 68899998887765 6888899999999999986666666653
No 433
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=84.27 E-value=5.7 Score=46.22 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=29.0
Q ss_pred CCCCCcccCCCCHHHHHHHHHc--CCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHH
Q 003881 222 RPVKTFEDCGFSTQLMHAISKQ--GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~--g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla 278 (789)
.|-.+|+++.-.+.+...+... -+..|..++... ....+.+|+.+|+|+|||+.
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~l 104 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLG---AKIPKGVLLVGPPGTGKTLL 104 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcC---CCCCCcEEEECCCCCCHHHH
Confidence 4456777775555544443321 012222222211 11225799999999999964
No 434
>PRK05748 replicative DNA helicase; Provisional
Probab=84.17 E-value=4.9 Score=46.15 Aligned_cols=114 Identities=17% Similarity=0.132 Sum_probs=55.9
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHH
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~ 341 (789)
|.-+++.|.+|+|||. |++-++.++... .+..++++.. -.-..|+...+.... .++....+..+.-....
T Consensus 203 G~livIaarpg~GKT~-~al~ia~~~a~~------~g~~v~~fSl-Ems~~~l~~R~l~~~--~~v~~~~i~~~~l~~~e 272 (448)
T PRK05748 203 NDLIIVAARPSVGKTA-FALNIAQNVATK------TDKNVAIFSL-EMGAESLVMRMLCAE--GNIDAQRLRTGQLTDDD 272 (448)
T ss_pred CceEEEEeCCCCCchH-HHHHHHHHHHHh------CCCeEEEEeC-CCCHHHHHHHHHHHh--cCCCHHHhhcCCCCHHH
Confidence 3557888999999997 466666554321 2344566532 333445544442211 12222212222222222
Q ss_pred HHHH------hcCCcEEEe-----ChHHHHHHHhhcccccCceeEEEEeccchhc
Q 003881 342 FKEL------KAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (789)
Q Consensus 342 ~~~l------~~~~dIiV~-----Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~ 385 (789)
+..+ .....+.|. |+..+...+.+-......+++||||=.+.|.
T Consensus 273 ~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 273 WPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 2221 123445553 4445544443221111257899999999874
No 435
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=84.12 E-value=2.8 Score=50.26 Aligned_cols=72 Identities=18% Similarity=0.316 Sum_probs=53.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHHc-----CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeeh-----hhhc-cCCCC
Q 003881 469 DDGDVLVFASKKTTVDEIESQLAQK-----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-----VAAR-GLDIK 537 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-----v~~r-GlDI~ 537 (789)
...++||.|++++-+.++++.|... ++.+..+||+.+...+...+ + ....|+|+|. .+.+ .+++.
T Consensus 73 ~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l---~-~~~~IVVgTPgrl~d~l~r~~l~l~ 148 (629)
T PRK11634 73 KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL---R-QGPQIVVGTPGRLLDHLKRGTLDLS 148 (629)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcchh
Confidence 3457999999999999988877653 68899999998776544443 2 3578999993 3333 47888
Q ss_pred CccEEEE
Q 003881 538 SIKSVVN 544 (789)
Q Consensus 538 ~v~~VI~ 544 (789)
++.+||.
T Consensus 149 ~l~~lVl 155 (629)
T PRK11634 149 KLSGLVL 155 (629)
T ss_pred hceEEEe
Confidence 8888774
No 436
>CHL00095 clpC Clp protease ATP binding subunit
Probab=84.06 E-value=6 Score=49.06 Aligned_cols=17 Identities=41% Similarity=0.442 Sum_probs=14.9
Q ss_pred CCEEEEccCCChhhHHH
Q 003881 263 RDIIGIAKTGSGKTAAF 279 (789)
Q Consensus 263 rdvll~a~TGsGKTla~ 279 (789)
.++|+++++|+|||...
T Consensus 201 ~n~lL~G~pGvGKTal~ 217 (821)
T CHL00095 201 NNPILIGEPGVGKTAIA 217 (821)
T ss_pred CCeEEECCCCCCHHHHH
Confidence 58999999999999753
No 437
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=83.91 E-value=2.5 Score=49.77 Aligned_cols=24 Identities=25% Similarity=0.127 Sum_probs=17.0
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHH
Q 003881 263 RDIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 263 rdvll~a~TGsGKTla~llpil~~l 287 (789)
+-+|++||.|+|||..+ ..+...+
T Consensus 39 hA~Lf~GP~GvGKTTlA-~~lAk~L 62 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIA-KIFAKAI 62 (605)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHh
Confidence 35889999999999753 3333444
No 438
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=83.47 E-value=1.6 Score=48.51 Aligned_cols=27 Identities=26% Similarity=0.477 Sum_probs=19.5
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhc
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMD 289 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l~~ 289 (789)
..-|+|+.+|||||||+. .--|+.++.
T Consensus 225 eKSNvLllGPtGsGKTll--aqTLAr~ld 251 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLL--AQTLARVLD 251 (564)
T ss_pred ecccEEEECCCCCchhHH--HHHHHHHhC
Confidence 345899999999999964 334555543
No 439
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=83.46 E-value=0.95 Score=47.10 Aligned_cols=44 Identities=32% Similarity=0.415 Sum_probs=29.3
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCC-CEEEEccCCChhhHHHHHHHHHH
Q 003881 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGR-DIIGIAKTGSGKTAAFVLPMIVH 286 (789)
Q Consensus 223 pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~gr-dvll~a~TGsGKTla~llpil~~ 286 (789)
.+.+|++++||+.+.+.. +..| -+|++++|||||+.. +..|+.|
T Consensus 106 ~IPt~eeL~LPevlk~la-------------------~~kRGLviiVGaTGSGKSTt-mAaMi~y 150 (375)
T COG5008 106 KIPTFEELKLPEVLKDLA-------------------LAKRGLVIIVGATGSGKSTT-MAAMIGY 150 (375)
T ss_pred cCCcHHhcCCcHHHHHhh-------------------cccCceEEEECCCCCCchhh-HHHHhcc
Confidence 456788888877665421 2223 377889999999986 5555554
No 440
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=83.40 E-value=6.2 Score=39.29 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=18.2
Q ss_pred CEEEEccCCChhhHHHHHHHHHHHhc
Q 003881 264 DIIGIAKTGSGKTAAFVLPMIVHIMD 289 (789)
Q Consensus 264 dvll~a~TGsGKTla~llpil~~l~~ 289 (789)
.+|+.++.|+|||.. +..+...++.
T Consensus 16 ~~L~~G~~G~gkt~~-a~~~~~~l~~ 40 (188)
T TIGR00678 16 AYLFAGPEGVGKELL-ALALAKALLC 40 (188)
T ss_pred EEEEECCCCCCHHHH-HHHHHHHHcC
Confidence 488999999999975 4444555544
No 441
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=83.31 E-value=12 Score=46.60 Aligned_cols=16 Identities=38% Similarity=0.451 Sum_probs=14.4
Q ss_pred CCEEEEccCCChhhHH
Q 003881 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll~a~TGsGKTla 278 (789)
.++|++++.|+|||..
T Consensus 209 ~n~lLvG~pGvGKTal 224 (852)
T TIGR03345 209 NNPILTGEAGVGKTAV 224 (852)
T ss_pred CceeEECCCCCCHHHH
Confidence 4899999999999965
No 442
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=83.31 E-value=6.7 Score=40.95 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=16.9
Q ss_pred HHHcCC-CEEEEccCCChhhHHHH
Q 003881 258 IILSGR-DIIGIAKTGSGKTAAFV 280 (789)
Q Consensus 258 ~il~gr-dvll~a~TGsGKTla~l 280 (789)
.+..++ -+.++++.|||||...=
T Consensus 46 ~i~d~qg~~~vtGevGsGKTv~~R 69 (269)
T COG3267 46 AIADGQGILAVTGEVGSGKTVLRR 69 (269)
T ss_pred HHhcCCceEEEEecCCCchhHHHH
Confidence 344455 67889999999997633
No 443
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=83.26 E-value=6.4 Score=42.90 Aligned_cols=127 Identities=17% Similarity=0.216 Sum_probs=61.9
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCcc--------ccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEEC
Q 003881 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPE--------LQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYG 334 (789)
Q Consensus 263 rdvll~a~TGsGKTla~llpil~~l~~~~~--------~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~g 334 (789)
+..|+.++.|+||+.. ...+...++.... ....+.|-.+++-|+...-.+. .-.......+.
T Consensus 27 ha~Lf~G~~G~Gk~~~-A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~--~~~~~~~~~~~------- 96 (314)
T PRK07399 27 PAYLFAGPEGVGRKLA-ALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKL--ITASEAEEAGL------- 96 (314)
T ss_pred ceEEEECCCCCCHHHH-HHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccc--cchhhhhhccc-------
Confidence 4689999999999975 5555666654321 1122345556666642110000 00000000000
Q ss_pred CCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEec
Q 003881 335 GMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSA 411 (789)
Q Consensus 335 g~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SA 411 (789)
.. .....|-|-....+...+..... ....+++|||+||.|-.. -.+.+.+++..-+ +..+|+++.
T Consensus 97 --~~-------~~~~~I~id~ir~i~~~l~~~p~-~~~~kVvII~~ae~m~~~-aaNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 97 --KR-------KAPPQIRLEQIREIKRFLSRPPL-EAPRKVVVIEDAETMNEA-AANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred --cc-------cccccCcHHHHHHHHHHHccCcc-cCCceEEEEEchhhcCHH-HHHHHHHHHhCCC-CCeEEEEEC
Confidence 00 00122333333334444443332 357899999999997543 2445666666655 554555444
No 444
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=83.24 E-value=1.2 Score=52.72 Aligned_cols=57 Identities=25% Similarity=0.189 Sum_probs=43.0
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEE
Q 003881 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVY 333 (789)
Q Consensus 263 rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~ 333 (789)
++++++|+||||||..+++|-|... +.-+||+=|--|+........++ .|.+|.++-
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~----------~~S~VV~DpKGEl~~~Ta~~R~~----~G~~V~vfd 215 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW----------EDSVVVHDIKLENYELTSGWREK----QGQKVFVWE 215 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC----------CCCEEEEeCcHHHHHHHHHHHHH----CCCeEEEEe
Confidence 5799999999999999999988763 22378899999998766555444 366665554
No 445
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=83.16 E-value=3.8 Score=50.16 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=16.6
Q ss_pred CCEEEEccCCChhhHHHHHHHHHH
Q 003881 263 RDIIGIAKTGSGKTAAFVLPMIVH 286 (789)
Q Consensus 263 rdvll~a~TGsGKTla~llpil~~ 286 (789)
+.+|+.+|+|+|||+. .-++++
T Consensus 488 ~giLL~GppGtGKT~l--akalA~ 509 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLL--AKAVAT 509 (733)
T ss_pred ceEEEECCCCCCHHHH--HHHHHH
Confidence 5689999999999964 334444
No 446
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=83.13 E-value=1.1 Score=52.98 Aligned_cols=154 Identities=16% Similarity=0.163 Sum_probs=86.4
Q ss_pred CCCcHHHHHHHHHHHcCC----------CEEEEccC--CChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHH
Q 003881 246 EKPTSIQCQALPIILSGR----------DIIGIAKT--GSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQ 313 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~gr----------dvll~a~T--GsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Q 313 (789)
..+...|.+++-.+.+.+ ..||-... |-|.|++ .+.+-+++ +...++|.+.-+..|-..
T Consensus 263 g~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvA-giIfeNyL--------kGRKrAlW~SVSsDLKfD 333 (1300)
T KOG1513|consen 263 GHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVA-GIIFENYL--------KGRKRALWFSVSSDLKFD 333 (1300)
T ss_pred cchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeE-EEEehhhh--------cccceeEEEEeccccccc
Confidence 457778888887766443 24554444 4456654 33333444 235678999888888766
Q ss_pred HHHHHHHHhhhcCCeEEEEE----CCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcc----------c---ccCceeEE
Q 003881 314 IYLETKKFAKSHGIRVSAVY----GGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKA----------L---TMSRVTYL 376 (789)
Q Consensus 314 i~~~~~~~~~~~~i~v~~~~----gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~----------~---~l~~i~~l 376 (789)
-.+.+..... .+|.|..+. +..+..+. ... .--||+|||-.|+---..+. + .-..-.+|
T Consensus 334 AERDL~DigA-~~I~V~alnK~KYakIss~en-~n~--krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvI 409 (1300)
T KOG1513|consen 334 AERDLRDIGA-TGIAVHALNKFKYAKISSKEN-TNT--KRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVI 409 (1300)
T ss_pred hhhchhhcCC-CCccceehhhccccccccccc-CCc--cceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeE
Confidence 6666655432 344443221 10000000 001 14599999998875432110 0 01112689
Q ss_pred EEeccchhccC---------CChHHHHHHHhhcCCCceEEEEeccC
Q 003881 377 VLDEADRMFDL---------GFEPQIRSIVGQIRPDRQTLLFSATM 413 (789)
Q Consensus 377 VvDEah~m~~~---------~f~~~i~~il~~l~~~~q~ll~SAT~ 413 (789)
||||||+-.+. .....+..+-..+| +.+++.-|||=
T Consensus 410 vfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASATG 454 (1300)
T KOG1513|consen 410 VFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASATG 454 (1300)
T ss_pred EehhhhhhcccccccCCCcCcccHhHHHHHHhCC-CceEEEeeccC
Confidence 99999976552 13455666666664 66799999993
No 447
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=83.13 E-value=1.4 Score=43.81 Aligned_cols=36 Identities=17% Similarity=0.101 Sum_probs=23.7
Q ss_pred EEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcH
Q 003881 265 IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTR 308 (789)
Q Consensus 265 vll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~Ptr 308 (789)
.++.+||+||||.. |+-.+..+. ..+.+++++-|..
T Consensus 4 ~~i~GpM~sGKS~e-Li~~~~~~~-------~~~~~v~~~kp~~ 39 (176)
T PF00265_consen 4 EFITGPMFSGKSTE-LIRRIHRYE-------IAGKKVLVFKPAI 39 (176)
T ss_dssp EEEEESTTSSHHHH-HHHHHHHHH-------HTT-EEEEEEEST
T ss_pred EEEECCcCChhHHH-HHHHHHHHH-------hCCCeEEEEEecc
Confidence 57889999999986 444443331 2356788888863
No 448
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=83.11 E-value=1.9 Score=49.12 Aligned_cols=40 Identities=25% Similarity=0.344 Sum_probs=30.6
Q ss_pred cHHHHHHHHHHHcCCC--EEEEccCCChhhHHHHHHHHHHHhc
Q 003881 249 TSIQCQALPIILSGRD--IIGIAKTGSGKTAAFVLPMIVHIMD 289 (789)
Q Consensus 249 tpiQ~~~i~~il~grd--vll~a~TGsGKTla~llpil~~l~~ 289 (789)
.+.|.+.+..+++... +|+.+|||||||.. +..+|..+..
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 6788888888776643 56789999999986 6677777644
No 449
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=83.06 E-value=5.2 Score=44.01 Aligned_cols=41 Identities=10% Similarity=0.053 Sum_probs=26.0
Q ss_pred cCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEec
Q 003881 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSA 411 (789)
Q Consensus 370 l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SA 411 (789)
....+++|||+||+|-.. -.+.+.++++.=++..-+|++|.
T Consensus 106 ~g~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t~ 146 (334)
T PRK07993 106 LGGAKVVWLPDAALLTDA-AANALLKTLEEPPENTWFFLACR 146 (334)
T ss_pred cCCceEEEEcchHhhCHH-HHHHHHHHhcCCCCCeEEEEEEC
Confidence 457899999999997643 24456666666444444444443
No 450
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=82.90 E-value=4.9 Score=40.80 Aligned_cols=55 Identities=20% Similarity=0.347 Sum_probs=28.5
Q ss_pred ChHHHHHHHhhcccccCceeEEEEeccchhc-cC----CChHHHHHHHhhcC-CCceEEEEeccC
Q 003881 355 TPGRLIDMLKMKALTMSRVTYLVLDEADRMF-DL----GFEPQIRSIVGQIR-PDRQTLLFSATM 413 (789)
Q Consensus 355 Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~-~~----~f~~~i~~il~~l~-~~~q~ll~SAT~ 413 (789)
+...++..+...... -+|||||+|.+. .. .+...+..++.... .....++++++.
T Consensus 105 ~l~~~~~~l~~~~~~----~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 105 ALERLLEKLKKKGKK----VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp -HHHHHHHHHHCHCC----EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred HHHHHHHHHHhcCCc----EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 344455555433222 679999999988 22 23344555555422 233445566664
No 451
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=82.87 E-value=5.1 Score=43.69 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=26.8
Q ss_pred cCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEecc
Q 003881 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT 412 (789)
Q Consensus 370 l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT 412 (789)
....+++|||+||+|... -.+.+.+.++.-+++..+|+.|..
T Consensus 106 ~~~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 106 LNGYRLFVIEPADAMNES-ASNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred cCCceEEEecchhhhCHH-HHHHHHHHhcCCCCCeEEEEEECC
Confidence 456889999999997643 244566666664444444444443
No 452
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=82.74 E-value=5.5 Score=48.81 Aligned_cols=53 Identities=23% Similarity=0.308 Sum_probs=29.0
Q ss_pred CCCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHH
Q 003881 223 PVKTFEDCGFSTQLMHAISKQ---GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 223 pi~sf~~~~l~~~l~~~l~~~---g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla 278 (789)
+-.+|++++-....++.+... .+..|.-++... +..++.+++.+++|+|||..
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~g---i~~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLG---IEPPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC---CCCCceEEEECCCCCChHHH
Confidence 345677776555444444322 112221111111 12347899999999999964
No 453
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=82.71 E-value=4.8 Score=46.34 Aligned_cols=89 Identities=16% Similarity=0.206 Sum_probs=59.0
Q ss_pred CChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHh---c-
Q 003881 272 GSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK---A- 347 (789)
Q Consensus 272 GsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~---~- 347 (789)
...|-. -+.++|..++ .....++||.|-|+.-|.++...++.. ++++.++||..+..+....|. .
T Consensus 322 ~~~K~~-~l~~lL~~~~------~~~~~KvIIFc~tkr~~~~l~~~l~~~----~~~a~~iHGd~sQ~eR~~~L~~FreG 390 (519)
T KOG0331|consen 322 ETAKLR-KLGKLLEDIS------SDSEGKVIIFCETKRTCDELARNLRRK----GWPAVAIHGDKSQSERDWVLKGFREG 390 (519)
T ss_pred HHHHHH-HHHHHHHHHh------ccCCCcEEEEecchhhHHHHHHHHHhc----CcceeeecccccHHHHHHHHHhcccC
Confidence 344543 2455555543 234668999999999998887776665 688999999988766544443 2
Q ss_pred CCcEEEeChHHHHHHHhhcccccCceeEEE
Q 003881 348 GCEIVIATPGRLIDMLKMKALTMSRVTYLV 377 (789)
Q Consensus 348 ~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lV 377 (789)
.+.|+|||. +...-+++..+++||
T Consensus 391 ~~~vLVATd------VAaRGLDi~dV~lVI 414 (519)
T KOG0331|consen 391 KSPVLVATD------VAARGLDVPDVDLVI 414 (519)
T ss_pred CcceEEEcc------cccccCCCccccEEE
Confidence 489999993 223344565666555
No 454
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=82.70 E-value=3.4 Score=45.62 Aligned_cols=42 Identities=24% Similarity=0.177 Sum_probs=25.9
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHH
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTREL 310 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreL 310 (789)
+..++++++||||||.. +-.++.++... ...+++.+--..|+
T Consensus 122 ~g~ili~G~tGSGKTT~-l~al~~~i~~~------~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTT-LASMIDYINKN------AAGHIITIEDPIEY 163 (343)
T ss_pred CcEEEEECCCCCCHHHH-HHHHHHhhCcC------CCCEEEEEcCChhh
Confidence 45789999999999975 44455554221 12345555544444
No 455
>PRK09165 replicative DNA helicase; Provisional
Probab=82.66 E-value=6.5 Score=45.75 Aligned_cols=119 Identities=16% Similarity=0.086 Sum_probs=57.5
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCccc--------cccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEEC
Q 003881 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPEL--------QKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYG 334 (789)
Q Consensus 263 rdvll~a~TGsGKTla~llpil~~l~~~~~~--------~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~g 334 (789)
.=+|+.|.+|+|||.. ++-++.++...... ....+..++|+.. -.-..|+...+..... ++....+..
T Consensus 218 ~livIaarpg~GKT~~-al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSl-EMs~~ql~~R~la~~s--~v~~~~i~~ 293 (497)
T PRK09165 218 DLIILAGRPSMGKTAL-ATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSL-EMSAEQLATRILSEQS--EISSSKIRR 293 (497)
T ss_pred ceEEEEeCCCCChHHH-HHHHHHHHHHhhcccccccccccccCCCeEEEEeC-cCCHHHHHHHHHHHhc--CCCHHHHhc
Confidence 4478889999999974 44444444321100 0012456666633 3344455544433321 332222222
Q ss_pred CCChHHHHHHHh------cCCcEEEe-----ChHHHHHHHhhcccccCceeEEEEeccchhcc
Q 003881 335 GMSKLDQFKELK------AGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMFD 386 (789)
Q Consensus 335 g~~~~~~~~~l~------~~~dIiV~-----Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~ 386 (789)
|.-....+..+. ....+.|. |+..+...+++-.. -..+++||||=.|.|..
T Consensus 294 ~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~-~~~~~lvvIDyLqli~~ 355 (497)
T PRK09165 294 GKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKR-QHGLDLLVVDYLQLIRG 355 (497)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhccC
Confidence 222222222221 12445553 44555444432211 23578999999997753
No 456
>PRK10436 hypothetical protein; Provisional
Probab=82.58 E-value=2 Score=49.36 Aligned_cols=35 Identities=26% Similarity=0.285 Sum_probs=23.0
Q ss_pred HHHHHHHHHc--CCCEEEEccCCChhhHHHHHHHHHHH
Q 003881 252 QCQALPIILS--GRDIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 252 Q~~~i~~il~--grdvll~a~TGsGKTla~llpil~~l 287 (789)
|.+.+..++. +--+|++++||||||.. +..+|.++
T Consensus 206 ~~~~l~~~~~~~~GliLvtGpTGSGKTTt-L~a~l~~~ 242 (462)
T PRK10436 206 QLAQFRQALQQPQGLILVTGPTGSGKTVT-LYSALQTL 242 (462)
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCChHHH-HHHHHHhh
Confidence 4444444432 33588899999999985 45566665
No 457
>PRK08840 replicative DNA helicase; Provisional
Probab=82.56 E-value=13 Score=42.96 Aligned_cols=115 Identities=15% Similarity=0.110 Sum_probs=53.1
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHH
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~ 340 (789)
.|.=+++.|.+|+|||.. ++-+..++... .+..++|+..= .-..|+...+-... .++...-+..|.-...
T Consensus 216 ~g~LiviaarPg~GKTaf-alnia~~~a~~------~~~~v~~fSlE-Ms~~ql~~Rlla~~--s~v~~~~i~~~~l~~~ 285 (464)
T PRK08840 216 GSDLIIVAARPSMGKTTF-AMNLCENAAMD------QDKPVLIFSLE-MPAEQLMMRMLASL--SRVDQTKIRTGQLDDE 285 (464)
T ss_pred CCceEEEEeCCCCchHHH-HHHHHHHHHHh------CCCeEEEEecc-CCHHHHHHHHHHhh--CCCCHHHHhcCCCCHH
Confidence 345577789999999974 44444444211 23445665332 22334433332221 1222221222222222
Q ss_pred HHH-------HHhcCCcEEEe-----ChHHHHHHHhhcccccCceeEEEEeccchhc
Q 003881 341 QFK-------ELKAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (789)
Q Consensus 341 ~~~-------~l~~~~dIiV~-----Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~ 385 (789)
.+. .+.....+.|. |...+...+++-......+++||||=.|.|.
T Consensus 286 e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 286 DWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMR 342 (464)
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcC
Confidence 222 22223445553 3334443332211112247899999988774
No 458
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=82.40 E-value=3.3 Score=41.61 Aligned_cols=52 Identities=23% Similarity=0.405 Sum_probs=25.9
Q ss_pred ceeEEEEeccchhccCCCh-----HHHHHHHhhcCCCceEEEEeccCcHHHHHHHHH
Q 003881 372 RVTYLVLDEADRMFDLGFE-----PQIRSIVGQIRPDRQTLLFSATMPRKVEKLARE 423 (789)
Q Consensus 372 ~i~~lVvDEah~m~~~~f~-----~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~ 423 (789)
.-.+|||||||.++..... +.+...+...+....-|+|..--+..+...++.
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~~~id~~ir~ 135 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSPSQIDKFIRD 135 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-GGGB-HHHHC
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCHHHHhHHHHH
Confidence 4568999999987764322 233355665555544454444444444444443
No 459
>PRK08760 replicative DNA helicase; Provisional
Probab=81.98 E-value=8.5 Score=44.50 Aligned_cols=112 Identities=19% Similarity=0.129 Sum_probs=55.3
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHH
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~ 341 (789)
|.=+++.|.+|+|||. |++-++.++... .+..++|+.. -.-..|+...+..... ++....+..|.-....
T Consensus 229 G~LivIaarPg~GKTa-fal~iA~~~a~~------~g~~V~~fSl-EMs~~ql~~Rl~a~~s--~i~~~~i~~g~l~~~e 298 (476)
T PRK08760 229 TDLIILAARPAMGKTT-FALNIAEYAAIK------SKKGVAVFSM-EMSASQLAMRLISSNG--RINAQRLRTGALEDED 298 (476)
T ss_pred CceEEEEeCCCCChhH-HHHHHHHHHHHh------cCCceEEEec-cCCHHHHHHHHHHhhC--CCcHHHHhcCCCCHHH
Confidence 3457778999999997 455555554321 2344666543 2333455544433321 2221112222222222
Q ss_pred HH-------HHhcCCcEEEe-----ChHHHHHHHhhcccccCceeEEEEeccchhc
Q 003881 342 FK-------ELKAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (789)
Q Consensus 342 ~~-------~l~~~~dIiV~-----Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~ 385 (789)
+. .+. ...+.|. |+..+...+.+-. .-..+++||||=.+.|.
T Consensus 299 ~~~~~~a~~~l~-~~~l~I~d~~~~t~~~I~~~~r~l~-~~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 299 WARVTGAIKMLK-ETKIFIDDTPGVSPEVLRSKCRRLK-REHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHHH-HhcCCCEEEEecHHhcC
Confidence 22 222 2445544 4455544443221 12357899999998774
No 460
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=81.86 E-value=3.6 Score=51.31 Aligned_cols=92 Identities=13% Similarity=0.196 Sum_probs=71.3
Q ss_pred CcccHHHHHHh-cCCCCCCCCEEEEecccccHHHHHHHHH----HcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEee
Q 003881 453 DAEKLPWLLEK-LPGMIDDGDVLVFASKKTTVDEIESQLA----QKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT 527 (789)
Q Consensus 453 ~~~k~~~L~~~-L~~~~~~~kvLVF~~s~~~a~~l~~~L~----~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT 527 (789)
...|-..-+.. ......+.+|.|.|||.--|++=.+.|+ ...+++..+.-=.+..+...+++..++|+++|+|.|
T Consensus 625 GFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT 704 (1139)
T COG1197 625 GFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT 704 (1139)
T ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEec
Confidence 44555544333 3333345689999999766655555554 457889999999999999999999999999999999
Q ss_pred -hhhhccCCCCCccEEEE
Q 003881 528 -DVAARGLDIKSIKSVVN 544 (789)
Q Consensus 528 -~v~~rGlDI~~v~~VI~ 544 (789)
.+++..+-+.++-+||.
T Consensus 705 HrLL~kdv~FkdLGLlII 722 (1139)
T COG1197 705 HRLLSKDVKFKDLGLLII 722 (1139)
T ss_pred hHhhCCCcEEecCCeEEE
Confidence 67789999999999885
No 461
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=81.80 E-value=8 Score=41.16 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=17.2
Q ss_pred HHHHHc-C--CCEEEEccCCChhhHH
Q 003881 256 LPIILS-G--RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 256 i~~il~-g--rdvll~a~TGsGKTla 278 (789)
++.+.. + +++++.+++|+|||..
T Consensus 102 l~~l~~~~~~~~~~i~g~~g~GKttl 127 (270)
T TIGR02858 102 LPYLVRNNRVLNTLIISPPQCGKTTL 127 (270)
T ss_pred HHHHHhCCCeeEEEEEcCCCCCHHHH
Confidence 444443 2 5889999999999964
No 462
>PRK08006 replicative DNA helicase; Provisional
Probab=81.77 E-value=14 Score=42.74 Aligned_cols=114 Identities=15% Similarity=0.125 Sum_probs=54.9
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHH
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~ 341 (789)
|.=+++.|.+|+|||. |++-+..++... .+..++|+..= .-..|+...+.... .++....+..+.-..+.
T Consensus 224 G~LiiIaarPgmGKTa-falnia~~~a~~------~g~~V~~fSlE-M~~~ql~~Rlla~~--~~v~~~~i~~~~l~~~e 293 (471)
T PRK08006 224 SDLIIVAARPSMGKTT-FAMNLCENAAML------QDKPVLIFSLE-MPGEQIMMRMLASL--SRVDQTRIRTGQLDDED 293 (471)
T ss_pred CcEEEEEeCCCCCHHH-HHHHHHHHHHHh------cCCeEEEEecc-CCHHHHHHHHHHHh--cCCCHHHhhcCCCCHHH
Confidence 3456778999999997 455555554321 13446665332 23334443333221 12222222222222222
Q ss_pred HHH-------HhcCCcEEEe-----ChHHHHHHHhhcccccCceeEEEEeccchhc
Q 003881 342 FKE-------LKAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (789)
Q Consensus 342 ~~~-------l~~~~dIiV~-----Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~ 385 (789)
+.. +.....+.|. |+..+...+++-......+++||||=.|.|.
T Consensus 294 ~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 294 WARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 222 2233455553 4444444443211112357899999999774
No 463
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=81.66 E-value=8.6 Score=39.42 Aligned_cols=51 Identities=24% Similarity=0.272 Sum_probs=31.7
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHH
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~ 321 (789)
+.-+++.+++|+|||.. ++-++...++ ++..++++.-. +-..|+.+.+..+
T Consensus 16 g~~~li~G~~G~GKt~~-~~~~~~~~~~-------~g~~~~y~s~e-~~~~~l~~~~~~~ 66 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTF-SLQFLYQGLK-------NGEKAMYISLE-EREERILGYAKSK 66 (224)
T ss_pred CeEEEEECCCCCCHHHH-HHHHHHHHHh-------CCCeEEEEECC-CCHHHHHHHHHHc
Confidence 45688899999999974 3333333322 24556776554 4566666666554
No 464
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=81.51 E-value=8.7 Score=38.13 Aligned_cols=61 Identities=15% Similarity=0.110 Sum_probs=34.1
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccc---cCCCeEEEEcCcHHHHHHHHHHHHHHhh
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQK---EEGPIGVICAPTRELAHQIYLETKKFAK 323 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~---~~gp~vLIl~PtreLa~Qi~~~~~~~~~ 323 (789)
.|.-+++.|++|+|||.. ++.++.++....+... ..+.++|++..--. ..++.+.+..+..
T Consensus 31 ~g~l~~i~g~~g~GKT~~-~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTL-ALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp TTSEEEEEECSTSSHHHH-HHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHH-HHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 455689999999999975 5666666554222111 13456777755433 4567777766653
No 465
>PRK07004 replicative DNA helicase; Provisional
Probab=81.50 E-value=9.5 Score=43.94 Aligned_cols=116 Identities=16% Similarity=0.152 Sum_probs=54.5
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHH
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~ 340 (789)
.|.=+++.|.+|+|||. |++-+..++.. ..+..++++.. -.-..|+...+-.. ..++....+.-|.-..+
T Consensus 212 ~g~liviaarpg~GKT~-~al~ia~~~a~------~~~~~v~~fSl-EM~~~ql~~R~la~--~~~v~~~~i~~g~l~~~ 281 (460)
T PRK07004 212 GGELIIVAGRPSMGKTA-FSMNIGEYVAV------EYGLPVAVFSM-EMPGTQLAMRMLGS--VGRLDQHRMRTGRLTDE 281 (460)
T ss_pred CCceEEEEeCCCCCccH-HHHHHHHHHHH------HcCCeEEEEeC-CCCHHHHHHHHHHh--hcCCCHHHHhcCCCCHH
Confidence 34557888999999997 45555555432 12344555532 22233443333211 11222221212222222
Q ss_pred HHHHH------hcCCcEEEe-----ChHHHHHHHhhcccccCceeEEEEeccchhcc
Q 003881 341 QFKEL------KAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMFD 386 (789)
Q Consensus 341 ~~~~l------~~~~dIiV~-----Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~ 386 (789)
.+..+ .....+.|. |+..+...+++-......+++||||=.+.|..
T Consensus 282 e~~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~ 338 (460)
T PRK07004 282 DWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSG 338 (460)
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccC
Confidence 22221 123556663 44444443332211223578999999998753
No 466
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=81.45 E-value=2.6 Score=50.71 Aligned_cols=43 Identities=9% Similarity=0.101 Sum_probs=23.8
Q ss_pred cCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEeccCc
Q 003881 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (789)
Q Consensus 370 l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~ 414 (789)
.....++||||||.|.... ...+...+...+... ++++.+|-+
T Consensus 116 ~g~~KV~IIDEa~~LT~~A-~NALLKtLEEPP~~t-ifILaTte~ 158 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSKSA-FNALLKTLEEPPKHV-IFILATTEV 158 (725)
T ss_pred cCCCEEEEEEChhhCCHHH-HHHHHHHhhcCCCce-EEEEEcCCh
Confidence 3577899999999875432 223444444433333 334444433
No 467
>PRK05636 replicative DNA helicase; Provisional
Probab=81.43 E-value=11 Score=44.06 Aligned_cols=109 Identities=21% Similarity=0.243 Sum_probs=51.4
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEE---cCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChH
Q 003881 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC---APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (789)
Q Consensus 263 rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl---~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~ 339 (789)
.=+++.|.+|+|||.. .+-++.++... .+..++|+ .+..+|+..+ .. ...++....+..|.-..
T Consensus 266 ~Liiiaarpg~GKT~~-al~~a~~~a~~------~g~~v~~fSlEMs~~ql~~R~----ls--~~s~v~~~~i~~g~l~~ 332 (505)
T PRK05636 266 QMIIVAARPGVGKSTL-ALDFMRSASIK------HNKASVIFSLEMSKSEIVMRL----LS--AEAEVRLSDMRGGKMDE 332 (505)
T ss_pred ceEEEEeCCCCCHHHH-HHHHHHHHHHh------CCCeEEEEEeeCCHHHHHHHH----HH--HhcCCCHHHHhcCCCCH
Confidence 3457789999999974 44444443211 23445665 3334444332 11 11222222222332222
Q ss_pred HHHHHHh------cCCcEEEe-----ChHHHHHHHhhcccccCceeEEEEeccchhc
Q 003881 340 DQFKELK------AGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (789)
Q Consensus 340 ~~~~~l~------~~~dIiV~-----Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~ 385 (789)
+.+..+. ....|.|. |...+...+++-.. -..+++||||=.|.|.
T Consensus 333 ~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~-~~~~~lvvIDYLql~~ 388 (505)
T PRK05636 333 DAWEKLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLKQ-KHDLKLIVVDYLQLMS 388 (505)
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcC
Confidence 2322221 23445553 33334333322111 2357899999999875
No 468
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=81.27 E-value=4.3 Score=46.72 Aligned_cols=70 Identities=19% Similarity=0.355 Sum_probs=53.7
Q ss_pred CCEEEEecccccHHHHHHHHHHc-----CCceeeccCCCCHHHHHHHHHHhhcCCcceEEee-----hhhh-ccCCCCCc
Q 003881 471 GDVLVFASKKTTVDEIESQLAQK-----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT-----DVAA-RGLDIKSI 539 (789)
Q Consensus 471 ~kvLVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT-----~v~~-rGlDI~~v 539 (789)
.++||.|++++-+.++++.++.. ++.+..++|+.+...+...+. ....|+|+| +.+. ..+++.++
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l~~l 148 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDLDAL 148 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccHHHC
Confidence 37999999999999998887653 578899999998866554443 567899999 2333 45788888
Q ss_pred cEEEE
Q 003881 540 KSVVN 544 (789)
Q Consensus 540 ~~VI~ 544 (789)
.+||.
T Consensus 149 ~~lVi 153 (460)
T PRK11776 149 NTLVL 153 (460)
T ss_pred CEEEE
Confidence 88885
No 469
>PF12846 AAA_10: AAA-like domain
Probab=81.15 E-value=4.3 Score=43.15 Aligned_cols=42 Identities=29% Similarity=0.482 Sum_probs=29.9
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHH
Q 003881 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAH 312 (789)
Q Consensus 263 rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~ 312 (789)
++++++|+||+|||.... .++..++. .+..++|+=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~-------~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIR-------RGPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHH-------cCCCEEEEcCCchHHH
Confidence 589999999999997644 55555543 3566788877755543
No 470
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=81.04 E-value=3.9 Score=48.75 Aligned_cols=60 Identities=18% Similarity=0.221 Sum_probs=54.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeeh
Q 003881 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD 528 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~ 528 (789)
..+.+||.+|++.-+......|...++.+..+|+.++..++..++.....|.++||+.|.
T Consensus 52 ~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tp 111 (591)
T TIGR01389 52 LKGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAP 111 (591)
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECh
Confidence 357899999999998888889999999999999999999999999999999999999883
No 471
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=80.99 E-value=6.2 Score=44.94 Aligned_cols=86 Identities=19% Similarity=0.300 Sum_probs=58.1
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHH---HHhc-CCcEEEeChHHHHHHHhhcccccCc
Q 003881 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELKA-GCEIVIATPGRLIDMLKMKALTMSR 372 (789)
Q Consensus 297 ~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~---~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~ 372 (789)
..|.++|.+.|..-|.-++..+.+. +++++.++||....+... .++. ..+|+|||. .. -..+.+.+
T Consensus 516 ~~ppiIIFvN~kk~~d~lAk~LeK~----g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTD-----vA-gRGIDIpn 585 (673)
T KOG0333|consen 516 FDPPIIIFVNTKKGADALAKILEKA----GYKVTTLHGGKSQEQRENALADFREGTGDILVATD-----VA-GRGIDIPN 585 (673)
T ss_pred CCCCEEEEEechhhHHHHHHHHhhc----cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEec-----cc-ccCCCCCc
Confidence 3577899999998888777766666 899999999988765433 3444 589999993 22 23455677
Q ss_pred eeEEEEeccchhccCCChHHHHHHHhhc
Q 003881 373 VTYLVLDEADRMFDLGFEPQIRSIVGQI 400 (789)
Q Consensus 373 i~~lVvDEah~m~~~~f~~~i~~il~~l 400 (789)
+++|| +.++...+...+.++
T Consensus 586 VSlVi--------nydmaksieDYtHRI 605 (673)
T KOG0333|consen 586 VSLVI--------NYDMAKSIEDYTHRI 605 (673)
T ss_pred cceee--------ecchhhhHHHHHHHh
Confidence 77665 333444555544444
No 472
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=80.95 E-value=6.8 Score=44.67 Aligned_cols=70 Identities=20% Similarity=0.311 Sum_probs=51.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHH---Hhc-CCcEEEeChHHHHHHHhhcccccCce
Q 003881 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (789)
Q Consensus 298 gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~---l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i 373 (789)
..++||.|++++-|..++..+... ++.+..++|+.+..+.... +.. ..+||||| +.+. ..+++..+
T Consensus 245 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaT-----d~~~-~GiDip~v 314 (434)
T PRK11192 245 VTRSIVFVRTRERVHELAGWLRKA----GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVAT-----DVAA-RGIDIDDV 314 (434)
T ss_pred CCeEEEEeCChHHHHHHHHHHHhC----CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEc-----cccc-cCccCCCC
Confidence 467999999999999888877663 7899999998876655333 333 47999999 3332 34467777
Q ss_pred eEEE
Q 003881 374 TYLV 377 (789)
Q Consensus 374 ~~lV 377 (789)
++||
T Consensus 315 ~~VI 318 (434)
T PRK11192 315 SHVI 318 (434)
T ss_pred CEEE
Confidence 7776
No 473
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=80.92 E-value=12 Score=37.74 Aligned_cols=38 Identities=24% Similarity=0.201 Sum_probs=24.3
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCc
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~Pt 307 (789)
|.-+.+.+++|+|||... +-++.+... .+..++++.-.
T Consensus 12 g~i~~i~G~~GsGKT~l~-~~~~~~~~~-------~g~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNIC-MILAVNAAR-------QGKKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHH-HHHHHHHHh-------CCCeEEEEECC
Confidence 456889999999999754 444444332 24456666553
No 474
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=80.73 E-value=3.7 Score=44.78 Aligned_cols=43 Identities=26% Similarity=0.251 Sum_probs=27.9
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHH
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa 311 (789)
.|+-+++.++.|+|||.. +++++....+ .+..++++-.-..+.
T Consensus 54 ~G~iteI~G~~GsGKTtL-aL~~~~~~~~-------~g~~v~yId~E~~~~ 96 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTL-ALHAIAEAQK-------AGGTAAFIDAEHALD 96 (321)
T ss_pred CCeEEEEECCCCCCHHHH-HHHHHHHHHH-------cCCcEEEEcccchhH
Confidence 346688999999999975 5555555533 245567775544443
No 475
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=80.62 E-value=2.9 Score=49.50 Aligned_cols=44 Identities=25% Similarity=0.391 Sum_probs=32.6
Q ss_pred cCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEeccC
Q 003881 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (789)
Q Consensus 370 l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~ 413 (789)
+.+-.++|+|||..-+|..-+..+...+..+..++.+++.+.-+
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRl 524 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRL 524 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccH
Confidence 45568899999998888888888888887666666555555443
No 476
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=80.55 E-value=2.4 Score=47.35 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=16.3
Q ss_pred cCCCEEEEccCCChhhHH
Q 003881 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla 278 (789)
.|+.+++++++|+|||..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred CCCEEEEECCCCCChhHH
Confidence 678899999999999974
No 477
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=80.47 E-value=3.6 Score=45.31 Aligned_cols=64 Identities=19% Similarity=0.199 Sum_probs=39.6
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHH-cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHH
Q 003881 237 MHAISKQGYEKPTSIQCQALPIIL-SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (789)
Q Consensus 237 ~~~l~~~g~~~ptpiQ~~~i~~il-~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa 311 (789)
++.|.+.|+ +++.+.+.+..+. .+.+++++++||+|||.. +-.++..+ . ...+.+++--+.||.
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl-l~al~~~i-~-------~~~riv~iEd~~El~ 218 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL-LSALLALV-A-------PDERIVLVEDAAELR 218 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH-HHHHHccC-C-------CCCcEEEECCcceec
Confidence 444555554 4566777776655 457999999999999974 33333332 1 123466777776763
No 478
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=80.46 E-value=20 Score=44.29 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=14.5
Q ss_pred CCCEEEEccCCChhhHH
Q 003881 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvll~a~TGsGKTla 278 (789)
+..+++++|+|+|||..
T Consensus 347 ~~~lll~GppG~GKT~l 363 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSL 363 (775)
T ss_pred CceEEEECCCCCCHHHH
Confidence 45699999999999964
No 479
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=80.40 E-value=5.3 Score=47.17 Aligned_cols=43 Identities=14% Similarity=0.158 Sum_probs=24.0
Q ss_pred cCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEeccCc
Q 003881 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (789)
Q Consensus 370 l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~ 414 (789)
.....++||||+|.|.... ...+...+...+ ..-+++|.+|-+
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a-~naLLK~LEepp-~~~vfI~~tte~ 159 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSA-FNALLKTIEEPP-PYIVFIFATTEV 159 (563)
T ss_pred cCCCEEEEEEChhhcCHHH-HHHHHHhhccCC-CCEEEEEecCCh
Confidence 4577899999999875432 223344444433 333444444533
No 480
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=80.24 E-value=8.1 Score=44.46 Aligned_cols=70 Identities=21% Similarity=0.313 Sum_probs=49.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHH---HHhc-CCcEEEeChHHHHHHHhhcccccCce
Q 003881 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (789)
Q Consensus 298 gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~---~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i 373 (789)
..++||.|+++.-|..+++.+.+. ++.+..++|+.+..+... .+.. ..+|+||| +.+. .-+++..+
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT-----dv~~-rGiDip~v 314 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKD----GIRSAAIHGNKSQGARTRALADFKSGDIRVLVAT-----DIAA-RGLDIEEL 314 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHC----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEc-----cHHh-cCCCcccC
Confidence 456899999999998887777654 789999999987654433 3333 47899999 3333 33456667
Q ss_pred eEEE
Q 003881 374 TYLV 377 (789)
Q Consensus 374 ~~lV 377 (789)
++||
T Consensus 315 ~~VI 318 (456)
T PRK10590 315 PHVV 318 (456)
T ss_pred CEEE
Confidence 6665
No 481
>PRK14701 reverse gyrase; Provisional
Probab=80.22 E-value=4.2 Score=53.66 Aligned_cols=60 Identities=12% Similarity=0.277 Sum_probs=52.9
Q ss_pred CCCEEEEecccccHHHHHHHHHHc------CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehh
Q 003881 470 DGDVLVFASKKTTVDEIESQLAQK------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDV 529 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~------g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v 529 (789)
..++||.+|++.-+.++.+.|... ++.+..+||+++..++..+++.+++|..+|||+|.-
T Consensus 122 g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 122 GKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred CCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 458999999999999999988763 467789999999999999999999999999999953
No 482
>PRK06321 replicative DNA helicase; Provisional
Probab=80.21 E-value=12 Score=43.29 Aligned_cols=112 Identities=15% Similarity=0.086 Sum_probs=54.5
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHH
Q 003881 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (789)
Q Consensus 263 rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~ 342 (789)
.=+++.|.+|+|||. |++-+..++... .+..++++.. -.-..|+...+... ..++...-+..+.-....+
T Consensus 227 ~LiiiaarPgmGKTa-fal~ia~~~a~~------~g~~v~~fSL-EMs~~ql~~Rlla~--~s~v~~~~i~~~~l~~~e~ 296 (472)
T PRK06321 227 NLMILAARPAMGKTA-LALNIAENFCFQ------NRLPVGIFSL-EMTVDQLIHRIICS--RSEVESKKISVGDLSGRDF 296 (472)
T ss_pred cEEEEEeCCCCChHH-HHHHHHHHHHHh------cCCeEEEEec-cCCHHHHHHHHHHh--hcCCCHHHhhcCCCCHHHH
Confidence 346778999999997 455565554321 1333555532 22333444333221 1223222222222222222
Q ss_pred H-------HHhcCCcEEEe-----ChHHHHHHHhhcccccCceeEEEEeccchhcc
Q 003881 343 K-------ELKAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMFD 386 (789)
Q Consensus 343 ~-------~l~~~~dIiV~-----Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~ 386 (789)
. .+. ...+.|. |...+...+++-.. -..+++||||=.+.|..
T Consensus 297 ~~~~~a~~~l~-~~~~~idd~~~~ti~~i~~~~r~~~~-~~~~~lvvIDyLql~~~ 350 (472)
T PRK06321 297 QRIVSVVNEMQ-EHTLLIDDQPGLKITDLRARARRMKE-SYDIQFLIIDYLQLLSG 350 (472)
T ss_pred HHHHHHHHHHH-cCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHHcCC
Confidence 2 222 3456664 44445444433211 23578999999998753
No 483
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=80.20 E-value=21 Score=42.93 Aligned_cols=117 Identities=15% Similarity=0.330 Sum_probs=73.0
Q ss_pred cCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHH---HHHHhc-CCcEEEeChHHHHHHHhhcccccC
Q 003881 296 EEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ---FKELKA-GCEIVIATPGRLIDMLKMKALTMS 371 (789)
Q Consensus 296 ~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~---~~~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~ 371 (789)
..+.++||+|+|+..|..+.+.+.+. ++.+.+++++....+. +..+.. ..+|+||| +.+. ..+.+.
T Consensus 440 ~~g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L~-rGfDiP 509 (655)
T TIGR00631 440 ARNERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLLR-EGLDLP 509 (655)
T ss_pred cCCCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----Chhc-CCeeeC
Confidence 34678999999999998887777765 7888889888665433 233333 47899999 3333 455688
Q ss_pred ceeEEEEeccchhccCCChHHHHHHHhhcC--CCceEEEEeccCcHHHHHHHH
Q 003881 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIR--PDRQTLLFSATMPRKVEKLAR 422 (789)
Q Consensus 372 ~i~~lVvDEah~m~~~~f~~~i~~il~~l~--~~~q~ll~SAT~~~~i~~l~~ 422 (789)
.+++||+-+++...-......+.+.+.+.. .....+++--.....+...+.
T Consensus 510 ~v~lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~~~~~~ai~ 562 (655)
T TIGR00631 510 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYADKITDSMQKAIE 562 (655)
T ss_pred CCcEEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCCHHHHHHHH
Confidence 999998888876322222333333333322 223455555555555444333
No 484
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=80.07 E-value=12 Score=43.00 Aligned_cols=37 Identities=14% Similarity=0.139 Sum_probs=21.6
Q ss_pred CceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEE
Q 003881 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLL 408 (789)
Q Consensus 371 ~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll 408 (789)
....+|||||+|.|.... ...+...+...+....+|+
T Consensus 120 ~~~kvvIIdead~lt~~~-~n~LLk~lEep~~~~~~Il 156 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEA-FNSLLKTLEEPPQHVKFFL 156 (451)
T ss_pred CCCEEEEEecHHhhCHHH-HHHHHHHhhcCCCCceEEE
Confidence 567899999999875422 2234444554333333443
No 485
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=80.03 E-value=3.6 Score=49.62 Aligned_cols=71 Identities=20% Similarity=0.128 Sum_probs=54.5
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhh
Q 003881 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (789)
Q Consensus 247 ~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~ 323 (789)
.+++-|.+++... ...++|.|..|||||.+ +..-+.|++........ .+|.|+=|+-.|.++.+.+.+++.
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~v-lt~Ria~li~~~~v~p~---~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRV-LTERIAYLIAAGGVDPE---QILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhh-HHHHHHHHHHcCCcChH---HeeeeechHHHHHHHHHHHHHHhC
Confidence 5789999998766 55789999999999987 55556666665433222 378888899999999988888875
No 486
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=79.89 E-value=3.7 Score=40.95 Aligned_cols=32 Identities=28% Similarity=0.340 Sum_probs=24.8
Q ss_pred CCcHHHHHHHHHHH-cCCCEEEEccCCChhhHH
Q 003881 247 KPTSIQCQALPIIL-SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 247 ~ptpiQ~~~i~~il-~grdvll~a~TGsGKTla 278 (789)
..++-|.+.+...+ .+..++++++||+|||..
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 35566777776655 578899999999999975
No 487
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=79.63 E-value=6.8 Score=44.06 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=14.4
Q ss_pred CCEEEEccCCChhhHH
Q 003881 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll~a~TGsGKTla 278 (789)
+.+|+++|+|+|||+.
T Consensus 166 ~gvLL~GppGtGKT~l 181 (389)
T PRK03992 166 KGVLLYGPPGTGKTLL 181 (389)
T ss_pred CceEEECCCCCChHHH
Confidence 5799999999999975
No 488
>CHL00176 ftsH cell division protein; Validated
Probab=79.60 E-value=9.4 Score=45.75 Aligned_cols=16 Identities=25% Similarity=0.530 Sum_probs=14.4
Q ss_pred CCEEEEccCCChhhHH
Q 003881 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll~a~TGsGKTla 278 (789)
+.+|+.+|+|+|||+.
T Consensus 217 ~gVLL~GPpGTGKT~L 232 (638)
T CHL00176 217 KGVLLVGPPGTGKTLL 232 (638)
T ss_pred ceEEEECCCCCCHHHH
Confidence 5799999999999964
No 489
>PHA00350 putative assembly protein
Probab=79.45 E-value=14 Score=41.60 Aligned_cols=23 Identities=22% Similarity=0.236 Sum_probs=16.6
Q ss_pred EEEEccCCChhhHHHHH-HHHHHH
Q 003881 265 IIGIAKTGSGKTAAFVL-PMIVHI 287 (789)
Q Consensus 265 vll~a~TGsGKTla~ll-pil~~l 287 (789)
.|+.+..|||||+.++. .++..+
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~pal 27 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPAL 27 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHH
Confidence 47889999999987665 344443
No 490
>PF14516 AAA_35: AAA-like domain
Probab=79.41 E-value=20 Score=39.42 Aligned_cols=40 Identities=20% Similarity=0.220 Sum_probs=32.1
Q ss_pred cHHHHHHHHHHHc-CCCEEEEccCCChhhHHHHHHHHHHHhc
Q 003881 249 TSIQCQALPIILS-GRDIIGIAKTGSGKTAAFVLPMIVHIMD 289 (789)
Q Consensus 249 tpiQ~~~i~~il~-grdvll~a~TGsGKTla~llpil~~l~~ 289 (789)
.|+..+++..+.+ |.-+.|.+|=.+|||.. +..++.++.+
T Consensus 17 ~~~e~~~~~~i~~~G~~~~I~apRq~GKTSl-l~~l~~~l~~ 57 (331)
T PF14516_consen 17 PPAEQECYQEIVQPGSYIRIKAPRQMGKTSL-LLRLLERLQQ 57 (331)
T ss_pred hHHHHHHHHHHhcCCCEEEEECcccCCHHHH-HHHHHHHHHH
Confidence 3589999999987 89999999999999975 5555566533
No 491
>PTZ00110 helicase; Provisional
Probab=79.33 E-value=10 Score=44.69 Aligned_cols=72 Identities=22% Similarity=0.303 Sum_probs=51.8
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHH---HHHhc-CCcEEEeChHHHHHHHhhcccccCc
Q 003881 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF---KELKA-GCEIVIATPGRLIDMLKMKALTMSR 372 (789)
Q Consensus 297 ~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~---~~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~ 372 (789)
.+.++||.|+|+.-|..+...+.. .++.+.+++|+....+.. ..++. ...|||||. .+. .-+++..
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~----~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTd-----v~~-rGIDi~~ 445 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRL----DGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATD-----VAS-RGLDVKD 445 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHH----cCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcc-----hhh-cCCCccc
Confidence 357899999999999888777664 378889999988765543 33333 478999993 332 3446777
Q ss_pred eeEEEE
Q 003881 373 VTYLVL 378 (789)
Q Consensus 373 i~~lVv 378 (789)
+++||.
T Consensus 446 v~~VI~ 451 (545)
T PTZ00110 446 VKYVIN 451 (545)
T ss_pred CCEEEE
Confidence 887775
No 492
>PRK07413 hypothetical protein; Validated
Probab=79.24 E-value=8.2 Score=42.92 Aligned_cols=53 Identities=19% Similarity=0.186 Sum_probs=39.0
Q ss_pred CceeEEEEeccchhccCCChH--HHHHHHhhcCCCceEEEEecc-CcHHHHHHHHH
Q 003881 371 SRVTYLVLDEADRMFDLGFEP--QIRSIVGQIRPDRQTLLFSAT-MPRKVEKLARE 423 (789)
Q Consensus 371 ~~i~~lVvDEah~m~~~~f~~--~i~~il~~l~~~~q~ll~SAT-~~~~i~~l~~~ 423 (789)
..+++|||||+-..++.++.+ .+..++...+....+|+..-. .|+.+.+++..
T Consensus 304 g~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVLTGR~~ap~~lie~ADl 359 (382)
T PRK07413 304 GLYKTIILDELNPTVDLELLPVEPIVQTLLRKPRDTEVIITGRCKNQPAYFDLASV 359 (382)
T ss_pred CCCCEEEEechHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHhCch
Confidence 468899999999988888664 667777776666666666665 77777666543
No 493
>PRK09354 recA recombinase A; Provisional
Probab=79.19 E-value=5.8 Score=43.73 Aligned_cols=42 Identities=24% Similarity=0.251 Sum_probs=28.2
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHH
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa 311 (789)
|+-+.+.++.|+|||.. ++.++....+ .+..+++|-.-..+-
T Consensus 60 G~IteI~G~~GsGKTtL-al~~~~~~~~-------~G~~~~yId~E~s~~ 101 (349)
T PRK09354 60 GRIVEIYGPESSGKTTL-ALHAIAEAQK-------AGGTAAFIDAEHALD 101 (349)
T ss_pred CeEEEEECCCCCCHHHH-HHHHHHHHHH-------cCCcEEEECCccchH
Confidence 46688999999999985 4444444432 356678876655554
No 494
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=78.89 E-value=9 Score=42.82 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=19.3
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHH
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l 287 (789)
.|+.++|.++.|+|||.. +-.+.+.+
T Consensus 168 kGQR~lIvgppGvGKTTL-aK~Ian~I 193 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVL-LQNIANSI 193 (416)
T ss_pred cCceEEEeCCCCCChhHH-HHHHHHHH
Confidence 678899999999999964 33344444
No 495
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=78.87 E-value=2.9 Score=49.42 Aligned_cols=38 Identities=18% Similarity=0.158 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHHcC--CCEEEEccCCChhhHHHHHHHHHHH
Q 003881 249 TSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 249 tpiQ~~~i~~il~g--rdvll~a~TGsGKTla~llpil~~l 287 (789)
.+-|.+.+..++.. -.+|++++||||||.. +..++.++
T Consensus 301 ~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt-l~a~l~~~ 340 (564)
T TIGR02538 301 EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVS-LYTALNIL 340 (564)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHHhh
Confidence 34555566555543 3577899999999976 45566665
No 496
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=78.86 E-value=2 Score=49.40 Aligned_cols=47 Identities=15% Similarity=0.214 Sum_probs=29.6
Q ss_pred eChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcC
Q 003881 354 ATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR 401 (789)
Q Consensus 354 ~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~ 401 (789)
-+||-..++-- ..+.+..-.+.|+|||-.-++.+.+..+-.++..+.
T Consensus 571 LS~GEqQRLa~-ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~g 617 (659)
T KOG0060|consen 571 LSPGEQQRLAF-ARLFYHKPKFAILDECTSAVTEDVEGALYRKCREMG 617 (659)
T ss_pred cCHHHHHHHHH-HHHHhcCCceEEeechhhhccHHHHHHHHHHHHHcC
Confidence 35655544322 233466778999999997776666666666665543
No 497
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=78.85 E-value=8.5 Score=43.37 Aligned_cols=79 Identities=16% Similarity=0.200 Sum_probs=43.8
Q ss_pred ceeEEEEeccchhccCC--------ChH----HHHHHHhhcCCCceEEEEecc-CcHHHHHHHHHHhCCCeEEeeccccC
Q 003881 372 RVTYLVLDEADRMFDLG--------FEP----QIRSIVGQIRPDRQTLLFSAT-MPRKVEKLAREILSDPVRVTVGEVGM 438 (789)
Q Consensus 372 ~i~~lVvDEah~m~~~~--------f~~----~i~~il~~l~~~~q~ll~SAT-~~~~i~~l~~~~l~~p~~i~i~~~~~ 438 (789)
...+++|||+|.++... ..- .+..+.....++-++++++|| .|..+.+-++..+..-
T Consensus 245 qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr---------- 314 (428)
T KOG0740|consen 245 QPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFVKR---------- 314 (428)
T ss_pred CCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhhce----------
Confidence 56678899999876422 011 112222223455689999999 6766666555533321
Q ss_pred cccceeEEEEecCCCcccHHHHHHhcCCC
Q 003881 439 ANEDITQVVHVIPSDAEKLPWLLEKLPGM 467 (789)
Q Consensus 439 ~~~~i~q~~~~~~~~~~k~~~L~~~L~~~ 467 (789)
.+...++...+...+..+|.+.
T Consensus 315 -------~yiplPd~etr~~~~~~ll~~~ 336 (428)
T KOG0740|consen 315 -------LYIPLPDYETRSLLWKQLLKEQ 336 (428)
T ss_pred -------eeecCCCHHHHHHHHHHHHHhC
Confidence 2223344455666666666653
No 498
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=78.64 E-value=8.6 Score=43.67 Aligned_cols=72 Identities=19% Similarity=0.263 Sum_probs=51.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHH---Hhc-CCcEEEeChHHHHHHHhhcccccCce
Q 003881 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (789)
Q Consensus 298 gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~---l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i 373 (789)
..++||.|+++..|..+++.+... ++++..++|+....+.... +.. .++|+|||. .+. ..+++..+
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~~----g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd-----v~~-rGiDip~v 324 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAAD----GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD-----VAA-RGLHIPAV 324 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhC----CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec-----hhh-cCCCcccc
Confidence 456899999999998877776654 8899999998876554332 333 589999993 333 34567778
Q ss_pred eEEEEe
Q 003881 374 TYLVLD 379 (789)
Q Consensus 374 ~~lVvD 379 (789)
++||.-
T Consensus 325 ~~VI~~ 330 (423)
T PRK04837 325 THVFNY 330 (423)
T ss_pred CEEEEe
Confidence 777654
No 499
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=78.54 E-value=4.6 Score=42.87 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHc-C-CCEEEEccCCChhhHHHHHHHHHHH
Q 003881 250 SIQCQALPIILS-G-RDIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 250 piQ~~~i~~il~-g-rdvll~a~TGsGKTla~llpil~~l 287 (789)
+.|.+.|..++. . ..++++++||||||.. +..++.++
T Consensus 66 ~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i 104 (264)
T cd01129 66 PENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSEL 104 (264)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhh
Confidence 335555544443 3 3578999999999975 45555665
No 500
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=78.54 E-value=12 Score=35.64 Aligned_cols=40 Identities=18% Similarity=0.288 Sum_probs=27.7
Q ss_pred cCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEecc
Q 003881 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT 412 (789)
Q Consensus 370 l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT 412 (789)
+.+-.++|+||.-.-+|......+..++..+. . +++++.-
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~--~-til~~th 125 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEYP--G-TVILVSH 125 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHcC--C-EEEEEEC
Confidence 44667899999998888766777777777662 3 4444443
Done!