Query 003881
Match_columns 789
No_of_seqs 547 out of 3663
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 07:05:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003881.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003881hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 5.8E-66 2E-70 584.5 43.9 390 210-603 41-433 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 4.3E-59 1.5E-63 523.8 46.3 393 213-607 3-412 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 2.9E-56 9.9E-61 500.2 38.0 372 220-598 32-403 (410)
4 3eiq_A Eukaryotic initiation f 100.0 3.4E-55 1.1E-59 491.4 34.0 380 218-604 33-413 (414)
5 1s2m_A Putative ATP-dependent 100.0 5.9E-53 2E-57 471.5 38.8 370 222-600 18-387 (400)
6 1xti_A Probable ATP-dependent 100.0 2.3E-52 7.8E-57 464.8 37.7 367 225-599 8-379 (391)
7 1fuu_A Yeast initiation factor 100.0 5.8E-54 2E-58 477.8 24.8 377 219-603 15-391 (394)
8 3pey_A ATP-dependent RNA helic 100.0 8.9E-52 3E-56 459.7 40.5 358 222-590 2-369 (395)
9 3fht_A ATP-dependent RNA helic 100.0 5.2E-52 1.8E-56 464.9 38.3 369 221-599 21-401 (412)
10 3sqw_A ATP-dependent RNA helic 100.0 5.5E-52 1.9E-56 486.9 38.5 365 224-590 16-410 (579)
11 1hv8_A Putative ATP-dependent 100.0 5E-51 1.7E-55 449.1 42.3 356 224-594 5-361 (367)
12 3i5x_A ATP-dependent RNA helic 100.0 8.9E-52 3E-56 483.5 36.3 357 232-590 79-461 (563)
13 3fmp_B ATP-dependent RNA helic 100.0 5.1E-53 1.8E-57 484.4 21.3 367 223-599 90-468 (479)
14 2z0m_A 337AA long hypothetical 100.0 4.7E-49 1.6E-53 428.5 39.2 335 232-591 1-335 (337)
15 2v1x_A ATP-dependent DNA helic 100.0 1.6E-47 5.4E-52 447.3 36.5 346 224-587 18-383 (591)
16 3fho_A ATP-dependent RNA helic 100.0 1.4E-49 4.9E-54 458.8 18.0 371 218-599 112-492 (508)
17 3oiy_A Reverse gyrase helicase 100.0 3.8E-47 1.3E-51 427.3 29.2 326 236-591 10-376 (414)
18 1oyw_A RECQ helicase, ATP-depe 100.0 9.4E-46 3.2E-50 427.6 35.2 342 224-588 1-353 (523)
19 1tf5_A Preprotein translocase 100.0 1.6E-45 5.4E-50 431.6 23.9 374 180-580 20-547 (844)
20 3l9o_A ATP-dependent RNA helic 100.0 3.8E-45 1.3E-49 452.8 27.3 331 226-578 163-597 (1108)
21 4a2p_A RIG-I, retinoic acid in 100.0 3.8E-44 1.3E-48 417.2 28.9 330 245-580 5-510 (556)
22 3tbk_A RIG-I helicase domain; 100.0 7.3E-44 2.5E-48 414.2 25.5 330 246-583 3-512 (555)
23 2va8_A SSO2462, SKI2-type heli 100.0 7.2E-43 2.5E-47 419.4 34.6 341 224-580 7-410 (715)
24 2ykg_A Probable ATP-dependent 100.0 6.6E-44 2.3E-48 427.3 22.0 340 238-583 4-521 (696)
25 2zj8_A DNA helicase, putative 100.0 4.1E-43 1.4E-47 421.7 28.3 334 226-579 2-388 (720)
26 4a2q_A RIG-I, retinoic acid in 100.0 1.6E-42 5.5E-47 420.8 30.1 332 243-580 244-751 (797)
27 2p6r_A Afuhel308 helicase; pro 100.0 3.8E-43 1.3E-47 420.9 23.4 334 226-580 2-390 (702)
28 4ddu_A Reverse gyrase; topoiso 100.0 3.4E-42 1.2E-46 426.3 31.0 319 243-591 75-503 (1104)
29 1wp9_A ATP-dependent RNA helic 100.0 1.1E-41 3.7E-46 387.3 30.5 323 247-580 9-477 (494)
30 2fsf_A Preprotein translocase 100.0 7.7E-43 2.6E-47 407.6 20.8 365 192-580 23-585 (853)
31 1gku_B Reverse gyrase, TOP-RG; 100.0 1E-42 3.5E-47 431.1 22.8 324 238-592 48-468 (1054)
32 2xgj_A ATP-dependent RNA helic 100.0 1.2E-40 4.1E-45 409.3 36.5 318 244-585 84-507 (1010)
33 4a2w_A RIG-I, retinoic acid in 100.0 1.8E-41 6.2E-46 416.5 28.0 332 243-580 244-751 (936)
34 1nkt_A Preprotein translocase 100.0 1.9E-41 6.4E-46 396.1 25.6 366 193-582 58-621 (922)
35 1gm5_A RECG; helicase, replica 100.0 1.9E-41 6.5E-46 404.5 23.3 346 234-606 356-724 (780)
36 4gl2_A Interferon-induced heli 100.0 1.1E-41 3.8E-46 408.2 20.9 324 246-577 6-517 (699)
37 3fe2_A Probable ATP-dependent 100.0 3.5E-39 1.2E-43 336.1 28.7 239 198-436 2-240 (242)
38 2eyq_A TRCF, transcription-rep 100.0 1.5E-38 5.1E-43 396.1 38.8 323 230-578 586-922 (1151)
39 4a4z_A Antiviral helicase SKI2 100.0 2.5E-39 8.7E-44 397.5 28.9 308 247-576 39-490 (997)
40 4f92_B U5 small nuclear ribonu 100.0 3.9E-38 1.3E-42 402.9 34.4 344 232-586 911-1316(1724)
41 2whx_A Serine protease/ntpase/ 100.0 1.3E-40 4.4E-45 390.3 7.9 323 230-598 155-501 (618)
42 4f92_B U5 small nuclear ribonu 100.0 1E-37 3.5E-42 399.1 33.2 338 244-586 76-481 (1724)
43 2oca_A DAR protein, ATP-depend 100.0 3.4E-39 1.2E-43 372.5 16.4 311 246-575 112-452 (510)
44 2jlq_A Serine protease subunit 100.0 1.1E-38 3.9E-43 362.2 14.4 288 244-577 1-310 (451)
45 2fwr_A DNA repair protein RAD2 100.0 1.1E-37 3.6E-42 356.5 16.8 295 246-578 92-454 (472)
46 1yks_A Genome polyprotein [con 100.0 1.4E-38 4.7E-43 360.2 7.9 286 258-598 4-322 (440)
47 2wv9_A Flavivirin protease NS2 100.0 1.5E-38 5.3E-43 375.0 4.3 306 240-590 203-548 (673)
48 2xau_A PRE-mRNA-splicing facto 100.0 8.1E-37 2.8E-41 366.6 17.8 339 221-580 68-445 (773)
49 1wrb_A DJVLGB; RNA helicase, D 100.0 8.3E-36 2.8E-40 312.5 22.7 236 211-446 7-252 (253)
50 3o8b_A HCV NS3 protease/helica 100.0 1.5E-37 5E-42 361.7 9.8 279 247-582 217-518 (666)
51 3iuy_A Probable ATP-dependent 100.0 4.1E-35 1.4E-39 302.2 23.6 217 216-433 10-228 (228)
52 2z83_A Helicase/nucleoside tri 100.0 2.6E-36 8.8E-41 343.5 10.9 272 256-578 15-313 (459)
53 2v6i_A RNA helicase; membrane, 100.0 7.8E-35 2.7E-39 328.7 21.2 270 261-575 1-288 (431)
54 3bor_A Human initiation factor 100.0 2.7E-34 9.2E-39 298.2 23.1 214 216-434 21-235 (237)
55 3ber_A Probable ATP-dependent 100.0 4.9E-34 1.7E-38 298.6 25.3 208 222-434 40-248 (249)
56 3dkp_A Probable ATP-dependent 100.0 2.6E-34 8.9E-39 299.5 21.5 230 203-436 3-243 (245)
57 2pl3_A Probable ATP-dependent 100.0 1.4E-33 4.8E-38 292.3 26.2 227 201-434 6-233 (236)
58 3h1t_A Type I site-specific re 100.0 5.6E-35 1.9E-39 343.3 17.1 304 246-565 177-544 (590)
59 2oxc_A Probable ATP-dependent 100.0 9.1E-34 3.1E-38 292.8 23.6 212 216-433 15-228 (230)
60 3fmo_B ATP-dependent RNA helic 100.0 7.1E-34 2.4E-38 305.5 23.0 212 215-434 79-298 (300)
61 1q0u_A Bstdead; DEAD protein, 100.0 5.4E-34 1.8E-38 292.1 20.8 208 223-435 2-213 (219)
62 1z63_A Helicase of the SNF2/RA 100.0 3.2E-34 1.1E-38 330.1 21.2 312 246-578 36-453 (500)
63 1vec_A ATP-dependent RNA helic 100.0 3.1E-33 1.1E-37 283.1 25.3 202 225-431 3-205 (206)
64 1qde_A EIF4A, translation init 100.0 1.9E-33 6.5E-38 288.6 23.9 212 218-435 7-218 (224)
65 3mwy_W Chromo domain-containin 100.0 7.2E-33 2.5E-37 335.6 29.8 374 186-578 178-684 (800)
66 2gxq_A Heat resistant RNA depe 100.0 8.4E-33 2.9E-37 280.0 25.3 204 226-433 2-205 (207)
67 3dmq_A RNA polymerase-associat 100.0 7.1E-34 2.4E-38 349.6 20.5 317 246-575 152-610 (968)
68 1z3i_X Similar to RAD54-like; 100.0 1E-31 3.5E-36 317.8 33.9 324 246-578 54-528 (644)
69 3ly5_A ATP-dependent RNA helic 100.0 2E-32 6.9E-37 288.5 23.9 204 225-429 52-258 (262)
70 1t6n_A Probable ATP-dependent 100.0 1.6E-32 5.4E-37 281.1 22.1 208 220-432 9-219 (220)
71 3rc3_A ATP-dependent RNA helic 100.0 5.2E-33 1.8E-37 327.1 20.2 283 256-584 149-450 (677)
72 3jux_A Protein translocase sub 100.0 2E-30 6.8E-35 297.1 29.7 318 246-581 74-590 (822)
73 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 1.6E-29 5.3E-34 309.2 22.6 313 246-576 270-707 (1038)
74 2p6n_A ATP-dependent RNA helic 100.0 1.7E-27 5.8E-32 238.7 18.1 180 422-605 9-189 (191)
75 2ipc_A Preprotein translocase 99.9 4.1E-26 1.4E-30 265.9 30.7 130 243-385 76-215 (997)
76 1c4o_A DNA nucleotide excision 99.9 9E-27 3.1E-31 275.6 23.1 176 402-588 379-560 (664)
77 2jgn_A DBX, DDX3, ATP-dependen 99.9 1.9E-26 6.6E-31 229.8 17.0 169 437-607 14-182 (185)
78 2d7d_A Uvrabc system protein B 99.9 1.4E-25 4.8E-30 265.2 23.8 175 402-587 385-565 (661)
79 2rb4_A ATP-dependent RNA helic 99.9 1.1E-24 3.8E-29 215.0 15.4 154 439-594 4-163 (175)
80 2hjv_A ATP-dependent RNA helic 99.9 1.7E-24 5.8E-29 211.2 16.4 150 438-590 5-154 (163)
81 1t5i_A C_terminal domain of A 99.9 1.5E-24 5.1E-29 213.6 13.2 158 441-601 4-162 (172)
82 1fuk_A Eukaryotic initiation f 99.9 1E-24 3.4E-29 213.2 11.8 158 441-600 2-159 (165)
83 3eaq_A Heat resistant RNA depe 99.9 3.9E-23 1.3E-27 210.5 14.9 140 452-593 14-153 (212)
84 3b6e_A Interferon-induced heli 99.9 4.4E-23 1.5E-27 209.4 13.2 166 244-412 30-216 (216)
85 3i32_A Heat resistant RNA depe 99.9 2.2E-22 7.6E-27 215.1 14.8 147 443-592 3-149 (300)
86 2yjt_D ATP-dependent RNA helic 99.8 3.6E-24 1.2E-28 210.3 0.0 149 442-592 3-151 (170)
87 2vl7_A XPD; helicase, unknown 99.9 1.3E-21 4.4E-26 226.7 20.0 298 244-573 5-517 (540)
88 3llm_A ATP-dependent RNA helic 99.8 6.5E-21 2.2E-25 197.1 14.7 178 238-429 52-232 (235)
89 1rif_A DAR protein, DNA helica 99.8 3.8E-21 1.3E-25 204.4 12.8 156 246-418 112-267 (282)
90 3crv_A XPD/RAD3 related DNA he 99.8 3.1E-19 1.1E-23 207.4 27.9 282 247-549 3-473 (551)
91 4a15_A XPD helicase, ATP-depen 99.8 4.4E-17 1.5E-21 191.1 24.1 313 247-574 3-581 (620)
92 2fz4_A DNA repair protein RAD2 99.7 8.3E-18 2.8E-22 174.0 15.1 139 246-416 92-231 (237)
93 1z5z_A Helicase of the SNF2/RA 99.7 2.9E-18 1E-22 180.8 10.4 127 452-578 93-224 (271)
94 1w36_D RECD, exodeoxyribonucle 98.8 8.7E-09 3E-13 120.6 9.8 146 249-412 151-298 (608)
95 3hgt_A HDA1 complex subunit 3; 98.2 2.5E-06 8.5E-11 90.5 8.7 124 453-581 107-240 (328)
96 2gk6_A Regulator of nonsense t 98.0 3.1E-05 1E-09 90.9 14.3 70 245-321 178-247 (624)
97 4b3f_X DNA-binding protein smu 98.0 1.2E-05 4.2E-10 94.8 9.5 68 246-321 188-256 (646)
98 3lfu_A DNA helicase II; SF1 he 97.9 0.00018 6E-09 84.7 18.6 72 246-323 8-79 (647)
99 3upu_A ATP-dependent DNA helic 97.9 3.2E-05 1.1E-09 87.3 11.2 135 243-412 21-164 (459)
100 3e1s_A Exodeoxyribonuclease V, 97.9 2.8E-05 9.6E-10 90.0 10.7 124 246-412 188-315 (574)
101 2xzl_A ATP-dependent helicase 97.9 4.1E-05 1.4E-09 92.0 12.4 70 245-321 358-427 (802)
102 2wjy_A Regulator of nonsense t 97.9 6.6E-05 2.2E-09 90.2 13.2 70 245-321 354-423 (800)
103 2o0j_A Terminase, DNA packagin 97.0 0.0052 1.8E-07 67.1 13.4 73 247-325 163-235 (385)
104 3cpe_A Terminase, DNA packagin 96.7 0.012 4.3E-07 68.2 14.0 73 247-325 163-235 (592)
105 1pjr_A PCRA; DNA repair, DNA r 96.0 0.023 8E-07 67.6 11.6 110 246-383 10-121 (724)
106 1xx6_A Thymidine kinase; NESG, 96.0 0.011 3.7E-07 58.2 6.9 39 262-308 8-46 (191)
107 3ec2_A DNA replication protein 95.9 0.017 5.7E-07 55.7 8.0 30 249-278 16-54 (180)
108 2orw_A Thymidine kinase; TMTK, 95.8 0.026 9E-07 55.0 9.0 40 261-308 2-41 (184)
109 2j9r_A Thymidine kinase; TK1, 95.6 0.0089 3E-07 59.6 4.7 39 263-309 29-67 (214)
110 3vkw_A Replicase large subunit 95.6 0.026 9E-07 62.4 8.7 107 264-412 163-269 (446)
111 3te6_A Regulatory protein SIR3 95.2 0.14 4.8E-06 54.3 12.7 25 262-287 45-69 (318)
112 3kl4_A SRP54, signal recogniti 95.0 0.097 3.3E-06 58.0 10.9 132 263-425 98-235 (433)
113 2b8t_A Thymidine kinase; deoxy 94.9 0.019 6.6E-07 57.8 4.6 91 261-384 11-101 (223)
114 2kjq_A DNAA-related protein; s 94.8 0.013 4.3E-07 55.2 2.8 41 371-412 82-123 (149)
115 2zpa_A Uncharacterized protein 94.7 0.06 2E-06 62.6 8.5 113 247-414 175-289 (671)
116 1l8q_A Chromosomal replication 94.6 0.11 3.7E-06 55.1 9.9 17 262-278 37-53 (324)
117 1g5t_A COB(I)alamin adenosyltr 94.5 0.27 9.2E-06 48.2 11.6 134 263-421 29-171 (196)
118 1uaa_A REP helicase, protein ( 94.5 0.027 9.1E-07 66.5 5.2 71 247-323 2-72 (673)
119 2p65_A Hypothetical protein PF 94.4 0.23 7.8E-06 47.1 11.0 17 262-278 43-59 (187)
120 2orv_A Thymidine kinase; TP4A 94.4 0.055 1.9E-06 54.5 6.4 40 261-308 18-57 (234)
121 1d2n_A N-ethylmaleimide-sensit 94.3 0.36 1.2E-05 49.5 13.0 16 263-278 65-80 (272)
122 2w58_A DNAI, primosome compone 94.2 0.18 6.3E-06 49.1 10.0 16 263-278 55-70 (202)
123 2v1u_A Cell division control p 94.1 0.13 4.3E-06 55.5 9.3 17 262-278 44-60 (387)
124 1jbk_A CLPB protein; beta barr 93.7 0.39 1.3E-05 45.5 11.0 16 263-278 44-59 (195)
125 1gm5_A RECG; helicase, replica 93.5 0.11 3.6E-06 62.1 7.7 78 469-546 416-498 (780)
126 3dm5_A SRP54, signal recogniti 93.4 0.37 1.2E-05 53.4 11.3 132 263-425 101-236 (443)
127 2qby_B CDC6 homolog 3, cell di 93.4 0.31 1.1E-05 52.5 10.8 16 263-278 46-61 (384)
128 1fnn_A CDC6P, cell division co 93.2 0.18 6.3E-06 54.3 8.5 15 264-278 46-60 (389)
129 3e2i_A Thymidine kinase; Zn-bi 93.2 0.079 2.7E-06 52.8 4.9 41 261-309 27-67 (219)
130 3u4q_A ATP-dependent helicase/ 93.1 0.15 5.1E-06 64.3 8.7 72 246-321 9-80 (1232)
131 2z4s_A Chromosomal replication 93.0 0.26 8.9E-06 54.8 9.6 44 372-415 194-239 (440)
132 3eie_A Vacuolar protein sortin 93.0 0.67 2.3E-05 49.0 12.4 51 222-278 12-67 (322)
133 2chg_A Replication factor C sm 93.0 0.67 2.3E-05 45.0 11.7 39 371-410 101-139 (226)
134 3h4m_A Proteasome-activating n 92.5 0.14 4.9E-06 52.9 6.2 53 223-278 12-67 (285)
135 3oiy_A Reverse gyrase helicase 92.5 0.23 7.9E-06 54.3 8.1 76 469-544 63-145 (414)
136 1a5t_A Delta prime, HOLB; zinc 92.3 0.21 7.1E-06 53.3 7.2 39 249-288 4-49 (334)
137 1w4r_A Thymidine kinase; type 92.0 0.16 5.4E-06 49.8 5.4 39 261-307 19-57 (195)
138 3bos_A Putative DNA replicatio 91.6 0.19 6.6E-06 50.0 5.6 18 261-278 51-68 (242)
139 2qgz_A Helicase loader, putati 91.5 0.59 2E-05 49.2 9.6 17 262-278 152-168 (308)
140 3cf0_A Transitional endoplasmi 91.4 0.86 2.9E-05 47.6 10.8 55 223-278 10-65 (301)
141 2qby_A CDC6 homolog 1, cell di 91.4 0.51 1.8E-05 50.5 9.3 17 262-278 45-61 (386)
142 3u61_B DNA polymerase accessor 91.3 0.48 1.6E-05 49.9 8.8 41 371-411 104-144 (324)
143 3n70_A Transport activator; si 91.3 0.46 1.6E-05 43.8 7.5 19 260-278 22-40 (145)
144 3co5_A Putative two-component 91.0 0.18 6E-06 46.6 4.4 20 259-278 24-43 (143)
145 3syl_A Protein CBBX; photosynt 90.9 0.24 8.1E-06 51.8 5.7 16 263-278 68-83 (309)
146 1njg_A DNA polymerase III subu 90.7 3.1 0.00011 40.6 13.7 15 264-278 47-61 (250)
147 3pfi_A Holliday junction ATP-d 90.5 1.7 5.6E-05 46.0 12.0 16 263-278 56-71 (338)
148 1sxj_E Activator 1 40 kDa subu 90.4 0.62 2.1E-05 49.6 8.7 43 370-413 132-174 (354)
149 2hjv_A ATP-dependent RNA helic 90.0 1.1 3.7E-05 42.1 9.1 73 298-380 35-111 (163)
150 2rb4_A ATP-dependent RNA helic 89.8 1.4 4.6E-05 41.9 9.6 71 298-378 34-108 (175)
151 2p6n_A ATP-dependent RNA helic 89.7 2.1 7.3E-05 41.4 11.1 71 298-378 54-128 (191)
152 4a1f_A DNAB helicase, replicat 89.4 0.45 1.5E-05 50.9 6.4 114 262-386 46-170 (338)
153 1t6n_A Probable ATP-dependent 89.3 2.1 7.1E-05 42.0 10.9 72 470-544 82-164 (220)
154 2qz4_A Paraplegin; AAA+, SPG7, 89.3 5 0.00017 40.2 14.1 17 262-278 39-55 (262)
155 1xwi_A SKD1 protein; VPS4B, AA 89.0 4.7 0.00016 42.4 14.1 50 223-278 7-61 (322)
156 4b4t_J 26S protease regulatory 88.8 0.53 1.8E-05 51.4 6.5 54 222-278 142-198 (405)
157 3vfd_A Spastin; ATPase, microt 88.7 3.1 0.00011 45.0 12.7 17 262-278 148-164 (389)
158 4ddu_A Reverse gyrase; topoiso 88.7 0.55 1.9E-05 58.3 7.3 96 449-544 99-202 (1104)
159 1iqp_A RFCS; clamp loader, ext 88.6 1.8 6.1E-05 45.1 10.5 39 371-410 109-147 (327)
160 2eyq_A TRCF, transcription-rep 88.0 1.4 4.8E-05 54.9 10.4 99 446-544 627-731 (1151)
161 3eaq_A Heat resistant RNA depe 87.7 1.8 6.2E-05 42.6 9.2 71 298-378 31-105 (212)
162 1fuk_A Eukaryotic initiation f 87.6 1.8 6.2E-05 40.6 8.8 73 298-380 30-106 (165)
163 2r6a_A DNAB helicase, replicat 87.5 2.2 7.5E-05 47.4 10.7 115 261-387 202-328 (454)
164 2oxc_A Probable ATP-dependent 87.2 3.2 0.00011 41.0 10.9 91 449-544 67-172 (230)
165 1t5i_A C_terminal domain of A 87.1 1.6 5.5E-05 41.4 8.2 73 298-380 31-107 (172)
166 2fna_A Conserved hypothetical 87.0 16 0.00055 38.0 16.9 52 355-410 123-177 (357)
167 1sxj_D Activator 1 41 kDa subu 86.8 1 3.5E-05 47.7 7.3 40 371-411 132-171 (353)
168 1jr3_A DNA polymerase III subu 86.5 3 0.0001 44.3 10.9 15 264-278 40-54 (373)
169 2dr3_A UPF0273 protein PH0284; 86.2 3.6 0.00012 40.8 10.6 50 261-319 22-71 (247)
170 2q6t_A DNAB replication FORK h 86.1 2 7E-05 47.5 9.5 115 262-387 200-325 (444)
171 2v1x_A ATP-dependent DNA helic 86.0 1.2 4E-05 51.5 7.7 79 447-528 63-144 (591)
172 2qp9_X Vacuolar protein sortin 85.6 1.4 4.6E-05 47.4 7.4 16 263-278 85-100 (355)
173 1w5s_A Origin recognition comp 85.6 0.87 3E-05 49.4 6.0 16 263-278 51-68 (412)
174 1n0w_A DNA repair protein RAD5 85.3 3.8 0.00013 40.5 10.3 18 261-278 23-40 (243)
175 3e70_C DPA, signal recognition 85.2 3.4 0.00012 43.8 10.2 136 262-425 129-265 (328)
176 1xti_A Probable ATP-dependent 84.8 4 0.00014 43.5 10.9 93 449-544 51-158 (391)
177 4b4t_K 26S protease regulatory 84.7 9.4 0.00032 41.9 13.7 54 222-278 166-222 (428)
178 3d8b_A Fidgetin-like protein 1 84.5 2.1 7.2E-05 45.9 8.4 17 262-278 117-133 (357)
179 2pk2_A Cyclin-T1, protein TAT; 84.3 0.63 2.1E-05 50.2 4.0 26 581-606 232-257 (358)
180 1sxj_B Activator 1 37 kDa subu 84.2 2.9 9.8E-05 43.4 9.1 38 372-410 107-144 (323)
181 3hu3_A Transitional endoplasmi 84.2 1.7 5.7E-05 48.9 7.6 43 373-415 298-350 (489)
182 2w0m_A SSO2452; RECA, SSPF, un 84.1 2.6 9E-05 41.3 8.4 18 261-278 22-39 (235)
183 1sxj_C Activator 1 40 kDa subu 83.9 2.6 9E-05 44.6 8.7 39 371-410 109-147 (340)
184 1sxj_A Activator 1 95 kDa subu 83.9 2.1 7.3E-05 48.3 8.4 41 371-413 147-189 (516)
185 4b4t_H 26S protease regulatory 83.4 1.2 4.2E-05 49.3 5.9 54 222-278 203-259 (467)
186 3uk6_A RUVB-like 2; hexameric 83.1 6.4 0.00022 41.8 11.5 16 263-278 71-86 (368)
187 3bor_A Human initiation factor 82.9 3.6 0.00012 40.9 8.8 73 469-544 97-179 (237)
188 3pvs_A Replication-associated 82.6 0.78 2.7E-05 51.0 4.0 16 263-278 51-66 (447)
189 1vec_A ATP-dependent RNA helic 82.5 5.9 0.0002 38.1 10.0 72 469-544 70-152 (206)
190 3ber_A Probable ATP-dependent 82.3 4.1 0.00014 41.0 9.1 71 470-544 111-192 (249)
191 3lda_A DNA repair protein RAD5 82.2 18 0.00061 39.3 14.7 24 255-278 166-194 (400)
192 2jgn_A DBX, DDX3, ATP-dependen 82.0 2.5 8.6E-05 40.6 7.0 71 298-378 46-120 (185)
193 1cr0_A DNA primase/helicase; R 81.8 2 7E-05 44.4 6.7 18 261-278 34-51 (296)
194 3hjh_A Transcription-repair-co 81.7 3.7 0.00013 46.0 9.1 52 261-323 13-64 (483)
195 2gno_A DNA polymerase III, gam 81.7 5.4 0.00018 41.7 9.9 40 370-410 80-119 (305)
196 3t15_A Ribulose bisphosphate c 81.7 1.5 5.1E-05 45.7 5.5 16 263-278 37-52 (293)
197 1qvr_A CLPB protein; coiled co 81.3 3 0.0001 50.4 8.7 16 263-278 192-207 (854)
198 3i5x_A ATP-dependent RNA helic 81.2 11 0.00038 42.6 13.2 78 297-381 338-419 (563)
199 2qen_A Walker-type ATPase; unk 81.1 4.3 0.00015 42.5 9.1 18 261-278 30-47 (350)
200 3fe2_A Probable ATP-dependent 80.8 5.2 0.00018 39.9 9.1 71 470-544 102-182 (242)
201 1oyw_A RECQ helicase, ATP-depe 80.7 1.7 6E-05 49.2 6.1 59 470-528 65-123 (523)
202 3i32_A Heat resistant RNA depe 80.5 3.3 0.00011 43.3 7.7 71 298-378 28-102 (300)
203 2px0_A Flagellar biosynthesis 80.1 6.2 0.00021 41.0 9.7 18 261-278 104-121 (296)
204 2i4i_A ATP-dependent RNA helic 79.5 6.9 0.00023 42.1 10.3 72 297-378 275-350 (417)
205 3bh0_A DNAB-like replicative h 79.3 5.3 0.00018 41.9 9.0 51 261-320 67-117 (315)
206 3sqw_A ATP-dependent RNA helic 79.2 14 0.00047 42.1 13.2 79 297-382 287-369 (579)
207 1hqc_A RUVB; extended AAA-ATPa 78.9 2.3 7.9E-05 44.4 6.0 16 263-278 39-54 (324)
208 1vma_A Cell division protein F 78.2 20 0.00068 37.4 12.9 16 263-278 105-120 (306)
209 2pl3_A Probable ATP-dependent 77.8 5.8 0.0002 39.2 8.4 70 470-544 97-177 (236)
210 1xp8_A RECA protein, recombina 77.4 4.3 0.00015 43.7 7.6 38 262-307 74-111 (366)
211 1qde_A EIF4A, translation init 77.1 7.5 0.00026 37.9 8.9 93 447-544 55-161 (224)
212 2gxq_A Heat resistant RNA depe 77.0 9.3 0.00032 36.6 9.4 71 470-544 72-150 (207)
213 1ls1_A Signal recognition part 76.9 14 0.00046 38.4 11.2 53 371-423 179-232 (295)
214 3bgw_A DNAB-like replicative h 76.4 2.4 8.4E-05 46.9 5.5 37 262-306 197-233 (444)
215 3iuy_A Probable ATP-dependent 76.0 4.5 0.00015 39.8 6.9 72 469-544 93-173 (228)
216 3cmu_A Protein RECA, recombina 75.8 2.5 8.6E-05 55.0 5.9 45 256-308 1415-1465(2050)
217 1nlf_A Regulatory protein REPA 75.7 9.1 0.00031 39.1 9.4 28 259-287 27-54 (279)
218 2ehv_A Hypothetical protein PH 75.5 3 0.0001 41.5 5.4 43 371-413 134-181 (251)
219 3pey_A ATP-dependent RNA helic 75.5 13 0.00044 39.4 10.9 76 297-382 242-321 (395)
220 1gku_B Reverse gyrase, TOP-RG; 74.8 4.6 0.00016 49.9 7.8 74 469-544 98-181 (1054)
221 3fht_A ATP-dependent RNA helic 74.8 7.9 0.00027 41.4 9.0 71 298-378 266-340 (412)
222 2d7d_A Uvrabc system protein B 74.7 50 0.0017 38.2 16.4 78 297-384 444-525 (661)
223 2chq_A Replication factor C sm 74.6 2.6 9E-05 43.6 4.9 15 264-278 40-54 (319)
224 3m6a_A ATP-dependent protease 74.6 3.2 0.00011 47.2 6.0 26 261-288 107-132 (543)
225 2cvh_A DNA repair and recombin 74.5 12 0.00041 36.1 9.6 17 262-278 20-36 (220)
226 1q0u_A Bstdead; DEAD protein, 74.5 3.8 0.00013 40.1 5.9 72 469-544 71-156 (219)
227 2zr9_A Protein RECA, recombina 74.3 1.7 6E-05 46.5 3.5 37 262-306 61-97 (349)
228 1wrb_A DJVLGB; RNA helicase, D 73.7 24 0.0008 35.1 11.8 71 470-544 100-180 (253)
229 1r6b_X CLPA protein; AAA+, N-t 73.3 8 0.00027 45.8 9.2 17 262-278 207-223 (758)
230 1hv8_A Putative ATP-dependent 73.3 31 0.0011 35.8 13.1 74 297-380 237-314 (367)
231 2ffh_A Protein (FFH); SRP54, s 73.2 21 0.00072 39.1 11.9 17 262-278 98-114 (425)
232 2z43_A DNA repair and recombin 73.2 7.1 0.00024 41.1 7.9 44 262-307 107-150 (324)
233 1wp9_A ATP-dependent RNA helic 72.8 7.9 0.00027 42.1 8.5 90 450-544 30-131 (494)
234 2yhs_A FTSY, cell division pro 72.7 11 0.00038 42.1 9.5 23 264-288 295-317 (503)
235 2zts_A Putative uncharacterize 72.2 3.6 0.00012 40.8 5.1 23 262-285 30-52 (251)
236 3hr8_A Protein RECA; alpha and 72.1 2.5 8.4E-05 45.4 4.0 38 262-307 61-98 (356)
237 1fuu_A Yeast initiation factor 71.1 14 0.00049 39.1 9.9 91 449-544 64-168 (394)
238 1c4o_A DNA nucleotide excision 71.0 67 0.0023 37.2 16.2 77 297-383 438-518 (664)
239 4b4t_M 26S protease regulatory 70.2 1.9 6.5E-05 47.6 2.6 55 221-278 174-231 (434)
240 1s2m_A Putative ATP-dependent 70.0 13 0.00044 39.6 9.3 72 298-379 258-333 (400)
241 3ly5_A ATP-dependent RNA helic 70.0 18 0.00062 36.4 9.9 71 470-544 126-207 (262)
242 2l8b_A Protein TRAI, DNA helic 70.0 3.2 0.00011 39.9 3.8 121 248-412 35-158 (189)
243 3cf2_A TER ATPase, transitiona 69.9 4 0.00014 48.6 5.4 54 222-278 471-527 (806)
244 4a74_A DNA repair and recombin 69.7 14 0.00049 35.8 8.8 18 261-278 24-41 (231)
245 2xxa_A Signal recognition part 69.7 18 0.00061 39.8 10.4 16 263-278 101-116 (433)
246 2yjt_D ATP-dependent RNA helic 72.3 0.97 3.3E-05 42.8 0.0 72 298-379 30-105 (170)
247 2j0s_A ATP-dependent RNA helic 69.0 14 0.00048 39.6 9.4 72 298-379 276-351 (410)
248 2i1q_A DNA repair and recombin 68.9 14 0.00049 38.4 9.1 24 255-278 86-114 (322)
249 2j37_W Signal recognition part 68.4 29 0.00099 38.9 11.8 15 264-278 103-117 (504)
250 2db3_A ATP-dependent RNA helic 67.4 13 0.00046 40.5 8.8 69 300-378 302-374 (434)
251 1e9r_A Conjugal transfer prote 66.6 4.5 0.00015 44.4 4.7 43 262-312 53-95 (437)
252 3eiq_A Eukaryotic initiation f 66.4 25 0.00085 37.5 10.7 93 449-544 83-189 (414)
253 3gk5_A Uncharacterized rhodane 65.8 5 0.00017 34.7 3.9 47 459-505 44-90 (108)
254 3dkp_A Probable ATP-dependent 65.8 5.4 0.00018 39.7 4.7 72 470-544 98-181 (245)
255 1ypw_A Transitional endoplasmi 65.6 17 0.00057 43.4 9.8 18 261-278 237-254 (806)
256 1v5w_A DMC1, meiotic recombina 65.1 14 0.00048 39.1 8.1 44 262-307 122-165 (343)
257 3cf2_A TER ATPase, transitiona 64.6 7.3 0.00025 46.4 6.2 16 263-278 239-254 (806)
258 2eyu_A Twitching motility prot 63.5 3.3 0.00011 42.3 2.6 20 259-278 22-41 (261)
259 4a2p_A RIG-I, retinoic acid in 62.8 7.4 0.00025 43.6 5.7 71 470-544 55-136 (556)
260 2v3c_C SRP54, signal recogniti 62.6 5.7 0.00019 43.8 4.5 16 263-278 100-115 (432)
261 3fmo_B ATP-dependent RNA helic 62.4 14 0.00047 38.3 7.3 107 470-587 162-285 (300)
262 2dhr_A FTSH; AAA+ protein, hex 62.2 14 0.00048 41.4 7.7 16 263-278 65-80 (499)
263 1pzn_A RAD51, DNA repair and r 61.6 22 0.00076 37.7 8.9 24 255-278 119-147 (349)
264 3u4q_B ATP-dependent helicase/ 61.4 9.4 0.00032 47.7 6.7 39 265-308 4-42 (1166)
265 3jvv_A Twitching mobility prot 61.4 7.4 0.00025 41.6 5.1 18 261-278 122-139 (356)
266 3cmu_A Protein RECA, recombina 61.2 9 0.00031 50.0 6.5 46 261-315 1080-1125(2050)
267 4a2q_A RIG-I, retinoic acid in 59.7 8.8 0.0003 45.7 5.9 71 470-544 296-377 (797)
268 3flh_A Uncharacterized protein 59.4 7.4 0.00025 34.5 3.9 46 460-505 61-108 (124)
269 1yks_A Genome polyprotein [con 58.7 10 0.00034 41.8 5.7 68 298-377 177-245 (440)
270 2v6i_A RNA helicase; membrane, 58.5 12 0.00041 41.0 6.2 54 298-356 171-225 (431)
271 3tbk_A RIG-I helicase domain; 58.4 8.3 0.00028 43.1 5.1 71 470-544 52-133 (555)
272 1wv9_A Rhodanese homolog TT165 57.7 9.3 0.00032 31.9 4.1 42 463-505 47-88 (94)
273 4b4t_L 26S protease subunit RP 56.8 22 0.00075 39.1 7.9 54 222-278 175-231 (437)
274 1p9r_A General secretion pathw 56.5 14 0.00049 40.3 6.4 25 262-287 167-191 (418)
275 1j8m_F SRP54, signal recogniti 56.0 54 0.0018 33.8 10.5 17 262-278 98-114 (297)
276 3cmw_A Protein RECA, recombina 55.9 7.6 0.00026 49.9 4.5 120 262-416 1431-1570(1706)
277 2oca_A DAR protein, ATP-depend 55.8 1.1E+02 0.0038 33.6 13.9 75 299-382 348-426 (510)
278 3o8b_A HCV NS3 protease/helica 55.0 11 0.00039 43.6 5.5 67 297-377 395-461 (666)
279 3b85_A Phosphate starvation-in 54.3 13 0.00045 36.3 5.1 31 248-278 8-38 (208)
280 2l82_A Designed protein OR32; 53.9 28 0.00096 29.9 6.3 51 473-523 5-55 (162)
281 1q57_A DNA primase/helicase; d 53.4 22 0.00076 39.7 7.5 50 261-318 241-290 (503)
282 3b6e_A Interferon-induced heli 53.4 10 0.00034 36.5 4.1 55 470-528 82-140 (216)
283 1lv7_A FTSH; alpha/beta domain 53.3 17 0.00058 36.3 6.0 53 223-278 7-61 (257)
284 2xau_A PRE-mRNA-splicing facto 53.2 24 0.00082 41.8 8.1 75 298-378 303-393 (773)
285 3foj_A Uncharacterized protein 52.7 5 0.00017 34.1 1.5 37 469-505 55-91 (100)
286 3g5j_A Putative ATP/GTP bindin 52.0 5.7 0.0002 35.3 1.9 38 469-506 87-126 (134)
287 2r44_A Uncharacterized protein 51.8 12 0.00042 39.0 4.7 23 256-278 40-62 (331)
288 1tf5_A Preprotein translocase 51.6 34 0.0012 40.6 8.8 70 469-544 123-209 (844)
289 3eme_A Rhodanese-like domain p 51.6 6 0.0002 33.7 1.9 37 469-505 55-91 (103)
290 3iwh_A Rhodanese-like domain p 51.5 5.7 0.00019 34.2 1.7 38 467-504 53-90 (103)
291 1tf7_A KAIC; homohexamer, hexa 51.4 56 0.0019 36.6 10.5 125 261-413 280-417 (525)
292 4a2w_A RIG-I, retinoic acid in 51.3 17 0.0006 44.1 6.6 71 470-544 296-377 (936)
293 2z0m_A 337AA long hypothetical 50.9 37 0.0013 34.7 8.4 70 470-544 56-135 (337)
294 2wv9_A Flavivirin protease NS2 50.8 15 0.00053 42.7 5.8 68 298-377 410-478 (673)
295 4ag6_A VIRB4 ATPase, type IV s 50.2 16 0.00053 39.4 5.4 42 261-310 34-75 (392)
296 4akg_A Glutathione S-transfera 50.2 17 0.00059 49.0 6.6 48 232-280 890-941 (2695)
297 3io5_A Recombination and repai 49.9 12 0.0004 39.5 4.0 42 264-311 30-71 (333)
298 2oap_1 GSPE-2, type II secreti 49.5 15 0.00051 41.3 5.2 39 238-278 237-276 (511)
299 3nbx_X ATPase RAVA; AAA+ ATPas 49.4 18 0.00061 40.5 5.8 26 253-278 32-57 (500)
300 4gl2_A Interferon-induced heli 49.4 5.1 0.00017 46.8 1.4 70 471-544 57-142 (699)
301 4b4t_I 26S protease regulatory 49.1 8 0.00027 42.4 2.8 54 222-278 176-232 (437)
302 3rc3_A ATP-dependent RNA helic 48.9 33 0.0011 39.9 8.1 74 300-384 322-401 (677)
303 3hws_A ATP-dependent CLP prote 48.3 27 0.00093 36.9 6.9 18 261-278 50-67 (363)
304 1ofh_A ATP-dependent HSL prote 48.2 36 0.0012 34.6 7.6 17 262-278 50-66 (310)
305 2bjv_A PSP operon transcriptio 48.2 11 0.00036 38.1 3.4 18 261-278 28-45 (265)
306 3dmn_A Putative DNA helicase; 47.7 38 0.0013 31.7 7.1 65 470-549 61-125 (174)
307 1tq1_A AT5G66040, senescence-a 47.4 18 0.00062 32.1 4.5 38 468-505 80-118 (129)
308 1tue_A Replication protein E1; 47.4 26 0.00089 34.4 5.9 75 195-287 4-82 (212)
309 1u0j_A DNA replication protein 47.2 26 0.00089 35.7 6.1 43 234-279 73-121 (267)
310 1gmx_A GLPE protein; transfera 47.0 12 0.00041 32.0 3.1 38 469-506 57-95 (108)
311 2ykg_A Probable ATP-dependent 45.5 16 0.00053 42.5 4.8 70 471-544 62-142 (696)
312 3b9p_A CG5977-PA, isoform A; A 45.2 32 0.0011 35.0 6.7 46 223-278 16-70 (297)
313 2fsf_A Preprotein translocase 44.6 25 0.00087 41.7 6.2 70 469-544 114-200 (853)
314 3vaa_A Shikimate kinase, SK; s 43.9 12 0.00042 35.9 2.9 18 261-278 24-41 (199)
315 2gza_A Type IV secretion syste 43.8 14 0.00048 39.4 3.7 20 259-278 172-191 (361)
316 1ixz_A ATP-dependent metallopr 43.3 41 0.0014 33.3 7.0 59 222-287 10-72 (254)
317 2fwr_A DNA repair protein RAD2 42.8 18 0.00063 39.7 4.6 82 448-544 113-198 (472)
318 4f4c_A Multidrug resistance pr 42.7 8.9 0.0003 48.5 2.1 44 370-413 1233-1276(1321)
319 1kgd_A CASK, peripheral plasma 42.6 12 0.00041 35.4 2.6 18 261-278 4-21 (180)
320 1qhx_A CPT, protein (chloramph 42.4 9.7 0.00033 35.5 1.9 17 262-278 3-19 (178)
321 3nwn_A Kinesin-like protein KI 42.1 17 0.00058 38.9 3.9 24 255-278 96-121 (359)
322 3a8t_A Adenylate isopentenyltr 41.5 13 0.00044 39.4 2.9 16 263-278 41-56 (339)
323 3iij_A Coilin-interacting nucl 40.8 9.9 0.00034 35.7 1.7 19 260-278 9-27 (180)
324 3l9o_A ATP-dependent RNA helic 40.8 17 0.00058 45.0 4.2 65 469-544 226-296 (1108)
325 3trf_A Shikimate kinase, SK; a 40.7 15 0.0005 34.6 2.9 17 262-278 5-21 (185)
326 2jlq_A Serine protease subunit 40.6 21 0.00073 39.2 4.6 68 298-377 188-256 (451)
327 1bg2_A Kinesin; motor protein, 40.1 20 0.00067 37.8 4.0 24 255-278 69-94 (325)
328 2fsx_A RV0390, COG0607: rhodan 39.9 41 0.0014 30.5 5.8 37 469-505 79-116 (148)
329 4etp_A Kinesin-like protein KA 39.8 20 0.00069 38.9 4.2 24 255-278 132-157 (403)
330 1ojl_A Transcriptional regulat 39.8 29 0.00098 36.0 5.2 18 261-278 24-41 (304)
331 3lw7_A Adenylate kinase relate 39.6 12 0.00042 34.3 2.1 15 264-278 3-17 (179)
332 1lvg_A Guanylate kinase, GMP k 39.5 17 0.00056 35.0 3.1 25 261-287 3-27 (198)
333 1kht_A Adenylate kinase; phosp 39.4 12 0.00042 35.1 2.2 17 262-278 3-19 (192)
334 1z5z_A Helicase of the SNF2/RA 39.4 96 0.0033 31.3 9.1 94 271-381 93-192 (271)
335 3dc4_A Kinesin-like protein NO 39.3 19 0.00064 38.3 3.7 24 255-278 86-111 (344)
336 2whx_A Serine protease/ntpase/ 38.7 37 0.0013 39.0 6.4 68 298-377 355-423 (618)
337 2nr8_A Kinesin-like protein KI 38.6 19 0.00064 38.5 3.6 24 255-278 95-120 (358)
338 1v8k_A Kinesin-like protein KI 38.4 20 0.00067 39.1 3.7 24 255-278 146-171 (410)
339 2qmh_A HPR kinase/phosphorylas 38.2 14 0.0005 36.0 2.4 18 261-278 33-50 (205)
340 1t5c_A CENP-E protein, centrom 38.2 19 0.00066 38.3 3.6 24 255-278 69-94 (349)
341 2h58_A Kinesin-like protein KI 38.1 22 0.00075 37.5 4.0 24 255-278 72-97 (330)
342 2zfi_A Kinesin-like protein KI 38.1 20 0.00067 38.5 3.6 24 255-278 81-106 (366)
343 2c9o_A RUVB-like 1; hexameric 38.0 31 0.0011 37.9 5.5 16 263-278 64-79 (456)
344 1kag_A SKI, shikimate kinase I 37.8 20 0.00068 33.1 3.3 24 262-287 4-27 (173)
345 2vvg_A Kinesin-2; motor protei 37.7 22 0.00076 37.8 4.0 24 255-278 81-106 (350)
346 3gbj_A KIF13B protein; kinesin 37.6 20 0.00068 38.2 3.6 24 255-278 84-109 (354)
347 2y65_A Kinesin, kinesin heavy 37.6 22 0.00076 38.0 4.0 24 255-278 76-101 (365)
348 2ze6_A Isopentenyl transferase 37.5 16 0.00056 36.7 2.8 15 264-278 3-17 (253)
349 3tau_A Guanylate kinase, GMP k 37.4 18 0.0006 35.1 2.9 18 261-278 7-24 (208)
350 4a14_A Kinesin, kinesin-like p 37.4 23 0.00077 37.6 4.0 24 255-278 75-100 (344)
351 1nij_A Hypothetical protein YJ 37.4 23 0.00079 37.0 4.0 14 265-278 7-20 (318)
352 3b6u_A Kinesin-like protein KI 37.3 22 0.00077 38.1 3.9 24 255-278 93-118 (372)
353 2j41_A Guanylate kinase; GMP, 37.1 16 0.00054 34.9 2.6 19 260-278 4-22 (207)
354 2wbe_C Bipolar kinesin KRP-130 37.1 19 0.00065 38.7 3.4 24 255-278 92-117 (373)
355 1x88_A Kinesin-like protein KI 36.9 18 0.00063 38.6 3.2 24 255-278 80-105 (359)
356 3foz_A TRNA delta(2)-isopenten 36.8 17 0.00058 38.0 2.8 15 264-278 12-26 (316)
357 2pt7_A CAG-ALFA; ATPase, prote 36.7 18 0.00062 38.1 3.1 20 259-278 168-187 (330)
358 3nhv_A BH2092 protein; alpha-b 36.7 21 0.0007 32.6 3.1 37 469-505 71-109 (144)
359 1goj_A Kinesin, kinesin heavy 36.7 19 0.00066 38.3 3.3 24 255-278 72-97 (355)
360 3nzo_A UDP-N-acetylglucosamine 36.7 2.3E+02 0.0077 30.1 12.1 90 253-355 26-119 (399)
361 2qor_A Guanylate kinase; phosp 36.6 15 0.00052 35.3 2.3 20 259-278 9-28 (204)
362 2va8_A SSO2462, SKI2-type heli 36.5 74 0.0025 37.0 8.7 76 298-379 252-363 (715)
363 1qxn_A SUD, sulfide dehydrogen 36.4 26 0.00089 31.5 3.8 37 469-505 81-118 (137)
364 2fz4_A DNA repair protein RAD2 36.4 40 0.0014 33.4 5.5 64 449-527 114-178 (237)
365 3ipz_A Monothiol glutaredoxin- 36.3 53 0.0018 28.1 5.6 52 463-514 10-67 (109)
366 2r62_A Cell division protease 36.0 20 0.00069 35.9 3.2 17 262-278 44-60 (268)
367 3exa_A TRNA delta(2)-isopenten 35.9 16 0.00054 38.3 2.4 16 263-278 4-19 (322)
368 1w36_B RECB, exodeoxyribonucle 35.8 56 0.0019 40.7 7.8 59 264-322 18-80 (1180)
369 3zyw_A Glutaredoxin-3; metal b 35.8 51 0.0017 28.5 5.4 48 467-514 12-65 (111)
370 3lre_A Kinesin-like protein KI 35.7 23 0.00077 37.8 3.7 24 255-278 97-122 (355)
371 2r8r_A Sensor protein; KDPD, P 35.4 30 0.001 34.4 4.3 17 264-280 8-24 (228)
372 2ipc_A Preprotein translocase 35.4 66 0.0023 38.6 7.7 54 469-528 119-176 (997)
373 1u94_A RECA protein, recombina 35.2 30 0.001 36.8 4.6 38 261-306 62-99 (356)
374 2ewv_A Twitching motility prot 35.2 18 0.00063 38.7 2.9 19 260-278 134-152 (372)
375 1iy2_A ATP-dependent metallopr 35.1 14 0.00047 37.6 1.8 59 223-287 35-96 (278)
376 3vkg_A Dynein heavy chain, cyt 35.1 36 0.0012 46.6 6.1 55 232-289 873-931 (3245)
377 1y63_A LMAJ004144AAA protein; 35.1 20 0.0007 33.8 2.9 18 261-278 9-26 (184)
378 3nwj_A ATSK2; P loop, shikimat 35.1 24 0.00083 35.5 3.6 26 259-286 45-70 (250)
379 3t0q_A AGR253WP; kinesin, alph 34.9 19 0.00063 38.4 2.8 24 255-278 77-102 (349)
380 3hix_A ALR3790 protein; rhodan 34.8 22 0.00074 30.4 2.8 37 469-505 51-88 (106)
381 3u06_A Protein claret segregat 34.7 26 0.00089 38.1 4.0 25 254-278 129-155 (412)
382 2heh_A KIF2C protein; kinesin, 34.6 24 0.00081 38.1 3.6 24 255-278 126-151 (387)
383 1f9v_A Kinesin-like protein KA 34.6 19 0.00064 38.3 2.8 24 255-278 76-101 (347)
384 2owm_A Nckin3-434, related to 34.6 24 0.0008 38.9 3.6 24 255-278 128-153 (443)
385 2yan_A Glutaredoxin-3; oxidore 34.5 62 0.0021 27.2 5.7 56 469-524 15-76 (105)
386 3tr0_A Guanylate kinase, GMP k 34.4 19 0.00064 34.3 2.6 25 261-287 6-30 (205)
387 1nkt_A Preprotein translocase 34.4 47 0.0016 39.7 6.3 69 470-544 152-237 (922)
388 3cm0_A Adenylate kinase; ATP-b 34.4 15 0.00053 34.4 1.9 18 261-278 3-20 (186)
389 1zp6_A Hypothetical protein AT 34.0 18 0.00061 34.1 2.3 18 261-278 8-25 (191)
390 3cob_A Kinesin heavy chain-lik 33.9 22 0.00076 38.1 3.2 24 255-278 71-96 (369)
391 3h1t_A Type I site-specific re 33.8 84 0.0029 35.5 8.4 80 297-382 438-527 (590)
392 2r2a_A Uncharacterized protein 33.7 30 0.001 33.5 3.9 17 264-280 7-23 (199)
393 3ney_A 55 kDa erythrocyte memb 33.2 21 0.0007 34.7 2.6 19 260-278 17-35 (197)
394 3kb2_A SPBC2 prophage-derived 33.2 18 0.00061 33.2 2.1 15 264-278 3-17 (173)
395 1ly1_A Polynucleotide kinase; 33.2 18 0.00061 33.5 2.2 15 264-278 4-18 (181)
396 3ice_A Transcription terminati 33.0 1.5E+02 0.0051 32.0 9.4 30 249-278 158-190 (422)
397 3p32_A Probable GTPase RV1496/ 32.7 2.4E+02 0.0084 29.4 11.4 15 264-278 81-95 (355)
398 3crm_A TRNA delta(2)-isopenten 32.6 22 0.00074 37.4 2.8 15 264-278 7-21 (323)
399 3dmq_A RNA polymerase-associat 32.5 72 0.0025 38.8 7.9 77 297-382 502-584 (968)
400 3kta_A Chromosome segregation 32.4 26 0.00089 32.7 3.2 23 264-288 28-50 (182)
401 3bfn_A Kinesin-like protein KI 32.4 20 0.00068 38.7 2.6 23 256-278 91-115 (388)
402 1z6g_A Guanylate kinase; struc 32.3 27 0.00092 34.1 3.4 26 260-287 21-46 (218)
403 3ukw_C Bimax1 peptide; arm rep 32.2 18 0.00061 22.3 1.2 12 777-788 4-15 (28)
404 2ius_A DNA translocase FTSK; n 32.2 45 0.0016 37.3 5.5 26 261-287 166-191 (512)
405 1rj9_A FTSY, signal recognitio 31.9 38 0.0013 35.1 4.6 26 262-289 102-127 (304)
406 1f2t_A RAD50 ABC-ATPase; DNA d 31.8 29 0.00098 31.7 3.3 22 265-288 26-47 (149)
407 2zj8_A DNA helicase, putative 31.7 99 0.0034 36.0 8.7 77 298-381 237-346 (720)
408 2z83_A Helicase/nucleoside tri 31.6 28 0.00095 38.4 3.7 53 298-355 190-243 (459)
409 1um8_A ATP-dependent CLP prote 31.5 26 0.00089 37.3 3.3 17 262-278 72-88 (376)
410 2r2a_A Uncharacterized protein 31.1 28 0.00096 33.7 3.2 40 373-412 88-132 (199)
411 1ak2_A Adenylate kinase isoenz 31.0 23 0.00078 34.9 2.6 18 261-278 15-32 (233)
412 3a00_A Guanylate kinase, GMP k 30.9 29 0.00098 32.8 3.2 23 263-287 2-24 (186)
413 3b5x_A Lipid A export ATP-bind 30.9 62 0.0021 36.8 6.6 42 370-411 496-537 (582)
414 1tev_A UMP-CMP kinase; ploop, 30.5 18 0.00062 33.9 1.7 17 262-278 3-19 (196)
415 4eun_A Thermoresistant glucoki 30.5 27 0.00091 33.4 2.9 18 261-278 28-45 (200)
416 2jtq_A Phage shock protein E; 30.4 30 0.001 28.0 2.8 36 469-505 40-76 (85)
417 1ex7_A Guanylate kinase; subst 30.4 23 0.00079 33.9 2.4 16 263-278 2-17 (186)
418 2rep_A Kinesin-like protein KI 30.2 24 0.00081 38.0 2.7 24 255-278 107-132 (376)
419 1ry6_A Internal kinesin; kines 30.2 31 0.001 36.9 3.5 18 261-278 82-101 (360)
420 1g8p_A Magnesium-chelatase 38 29.9 28 0.00097 36.2 3.3 18 261-278 44-61 (350)
421 2c95_A Adenylate kinase 1; tra 29.9 29 0.00098 32.6 3.0 19 260-278 7-25 (196)
422 4gp7_A Metallophosphoesterase; 29.9 19 0.00065 33.6 1.7 18 261-278 8-25 (171)
423 3d3q_A TRNA delta(2)-isopenten 29.8 26 0.00088 37.1 2.9 15 264-278 9-23 (340)
424 4fcw_A Chaperone protein CLPB; 29.7 31 0.0011 35.2 3.5 16 263-278 48-63 (311)
425 4f4c_A Multidrug resistance pr 29.6 13 0.00043 47.1 0.5 43 370-412 570-612 (1321)
426 3b9q_A Chloroplast SRP recepto 29.5 35 0.0012 35.4 3.8 26 261-288 99-124 (302)
427 1znw_A Guanylate kinase, GMP k 29.3 29 0.00099 33.4 3.0 29 258-288 16-44 (207)
428 2rhm_A Putative kinase; P-loop 28.7 23 0.00079 33.2 2.1 16 263-278 6-21 (193)
429 1knq_A Gluconate kinase; ALFA/ 28.6 26 0.00088 32.5 2.4 17 262-278 8-24 (175)
430 2hhg_A Hypothetical protein RP 28.5 27 0.00094 31.1 2.5 37 469-505 85-122 (139)
431 3e4c_A Caspase-1; zymogen, inf 28.3 63 0.0021 33.5 5.4 47 471-518 61-118 (302)
432 1vee_A Proline-rich protein fa 27.8 44 0.0015 29.7 3.7 37 469-505 73-110 (134)
433 1ye8_A Protein THEP1, hypothet 27.7 35 0.0012 32.2 3.2 23 264-288 2-24 (178)
434 1xjc_A MOBB protein homolog; s 27.6 56 0.0019 30.7 4.5 23 264-287 6-28 (169)
435 2k0z_A Uncharacterized protein 27.6 47 0.0016 28.3 3.8 37 469-505 55-91 (110)
436 2v54_A DTMP kinase, thymidylat 27.5 24 0.00083 33.5 2.0 18 261-278 3-20 (204)
437 1s96_A Guanylate kinase, GMP k 27.5 32 0.0011 33.8 2.9 20 259-278 13-32 (219)
438 1zuh_A Shikimate kinase; alpha 27.4 31 0.0011 31.7 2.7 16 263-278 8-23 (168)
439 2p6r_A Afuhel308 helicase; pro 27.4 33 0.0011 40.0 3.5 69 469-544 67-144 (702)
440 3t61_A Gluconokinase; PSI-biol 27.3 32 0.0011 32.8 2.8 16 263-278 19-34 (202)
441 1in4_A RUVB, holliday junction 27.0 33 0.0011 35.9 3.1 23 263-287 52-74 (334)
442 1via_A Shikimate kinase; struc 26.9 36 0.0012 31.5 3.1 16 263-278 5-20 (175)
443 2bdt_A BH3686; alpha-beta prot 26.9 33 0.0011 32.2 2.9 15 264-278 4-18 (189)
444 3eph_A TRNA isopentenyltransfe 26.9 30 0.001 37.6 2.7 14 265-278 5-18 (409)
445 3fkq_A NTRC-like two-domain pr 26.7 78 0.0027 33.6 6.1 26 355-381 243-268 (373)
446 2bwj_A Adenylate kinase 5; pho 26.6 35 0.0012 32.1 3.0 18 261-278 11-28 (199)
447 3ilm_A ALR3790 protein; rhodan 26.5 40 0.0014 30.5 3.2 37 469-505 55-92 (141)
448 2plr_A DTMP kinase, probable t 26.4 27 0.00091 33.3 2.1 18 261-278 3-20 (213)
449 2og2_A Putative signal recogni 26.3 47 0.0016 35.4 4.2 25 262-288 157-181 (359)
450 3fho_A ATP-dependent RNA helic 26.2 93 0.0032 34.5 6.9 90 447-544 162-265 (508)
451 3uie_A Adenylyl-sulfate kinase 26.2 30 0.001 33.0 2.5 18 261-278 24-41 (200)
452 1wik_A Thioredoxin-like protei 26.1 1.1E+02 0.0038 25.8 5.9 47 470-516 14-66 (109)
453 2iut_A DNA translocase FTSK; n 26.0 66 0.0023 36.5 5.5 26 262-288 214-239 (574)
454 3k1j_A LON protease, ATP-depen 26.0 51 0.0017 37.7 4.7 30 257-288 55-84 (604)
455 2i3b_A HCR-ntpase, human cance 25.9 43 0.0015 32.0 3.5 41 370-413 103-145 (189)
456 3pgw_S U1-70K; protein-RNA com 25.8 1E+02 0.0035 33.6 6.9 12 409-420 1-12 (437)
457 3c8u_A Fructokinase; YP_612366 25.7 34 0.0012 32.9 2.7 25 262-288 22-46 (208)
458 2x8a_A Nuclear valosin-contain 25.7 38 0.0013 34.4 3.2 53 223-278 5-60 (274)
459 1m7g_A Adenylylsulfate kinase; 25.7 28 0.00097 33.5 2.2 29 249-278 13-41 (211)
460 3mm4_A Histidine kinase homolo 25.7 4.1E+02 0.014 24.7 13.4 127 260-413 18-161 (206)
461 4h1g_A Maltose binding protein 25.6 62 0.0021 37.8 5.4 25 254-278 453-479 (715)
462 3fmp_B ATP-dependent RNA helic 25.4 1.2E+02 0.0042 33.0 7.6 67 471-544 163-241 (479)
463 2h54_A Caspase-1; allosteric s 25.4 1E+02 0.0036 29.1 6.0 47 471-518 44-101 (178)
464 1zak_A Adenylate kinase; ATP:A 25.3 41 0.0014 32.6 3.2 16 263-278 6-21 (222)
465 3qiv_A Short-chain dehydrogena 25.3 3.2E+02 0.011 26.4 10.2 81 260-357 7-95 (253)
466 1aky_A Adenylate kinase; ATP:A 25.1 38 0.0013 32.8 3.0 17 262-278 4-20 (220)
467 1zd8_A GTP:AMP phosphotransfer 25.1 36 0.0012 33.1 2.8 17 262-278 7-23 (227)
468 1nks_A Adenylate kinase; therm 25.1 36 0.0012 31.7 2.8 15 264-278 3-17 (194)
469 4a4z_A Antiviral helicase SKI2 25.1 98 0.0034 37.7 7.2 65 469-544 81-153 (997)
470 2zan_A Vacuolar protein sortin 25.0 32 0.0011 37.7 2.7 53 222-278 128-183 (444)
471 1gvn_B Zeta; postsegregational 24.9 28 0.00096 35.7 2.0 16 263-278 34-49 (287)
472 1sky_E F1-ATPase, F1-ATP synth 24.7 1.3E+02 0.0046 33.1 7.5 20 259-278 148-167 (473)
473 1qf9_A UMP/CMP kinase, protein 24.7 38 0.0013 31.5 2.8 15 264-278 8-22 (194)
474 3qks_A DNA double-strand break 24.7 43 0.0015 32.2 3.3 24 264-289 25-48 (203)
475 2pez_A Bifunctional 3'-phospho 24.6 28 0.00094 32.5 1.8 18 261-278 4-21 (179)
476 3sr0_A Adenylate kinase; phosp 24.6 38 0.0013 32.9 2.9 17 264-280 2-18 (206)
477 3czc_A RMPB; alpha/beta sandwi 24.5 1.1E+02 0.0037 26.3 5.5 56 299-357 19-76 (110)
478 1e6c_A Shikimate kinase; phosp 24.3 43 0.0015 30.6 3.1 16 263-278 3-18 (173)
479 2iyv_A Shikimate kinase, SK; t 24.3 46 0.0016 31.0 3.3 16 263-278 3-18 (184)
480 1jr3_D DNA polymerase III, del 24.2 5.8E+02 0.02 25.9 12.6 55 357-413 62-117 (343)
481 3pxg_A Negative regulator of g 24.1 46 0.0016 36.7 3.8 17 262-278 201-217 (468)
482 2vli_A Antibiotic resistance p 24.1 28 0.00097 32.3 1.7 17 262-278 5-21 (183)
483 3h11_B Caspase-8; cell death, 24.0 95 0.0032 31.5 5.8 39 480-519 48-86 (271)
484 3gx8_A Monothiol glutaredoxin- 23.9 1.2E+02 0.0042 26.4 5.8 48 466-513 11-67 (121)
485 1z63_A Helicase of the SNF2/RA 23.8 2.1E+02 0.007 31.3 9.1 95 271-382 322-422 (500)
486 1ukz_A Uridylate kinase; trans 23.7 33 0.0011 32.6 2.2 15 264-278 17-31 (203)
487 3fb4_A Adenylate kinase; psych 23.7 40 0.0014 32.3 2.9 15 264-278 2-16 (216)
488 1zu4_A FTSY; GTPase, signal re 23.7 63 0.0022 33.7 4.5 17 262-278 105-121 (320)
489 3d1p_A Putative thiosulfate su 23.5 38 0.0013 30.3 2.4 37 469-505 90-127 (139)
490 1pyo_A Caspase-2; apoptosis, c 23.4 1.1E+02 0.0038 28.6 5.7 48 470-518 33-94 (167)
491 3qf7_A RAD50; ABC-ATPase, ATPa 23.4 43 0.0015 35.6 3.2 16 264-279 25-40 (365)
492 1pjr_A PCRA; DNA repair, DNA r 23.3 2E+02 0.0067 33.5 9.2 38 470-508 351-388 (724)
493 3mwy_W Chromo domain-containin 23.2 2.7E+02 0.0092 32.8 10.5 94 272-382 554-653 (800)
494 2yvu_A Probable adenylyl-sulfa 23.2 38 0.0013 31.7 2.5 17 262-278 13-29 (186)
495 2jaq_A Deoxyguanosine kinase; 23.2 42 0.0014 31.6 2.8 15 264-278 2-16 (205)
496 2v9p_A Replication protein E1; 23.1 46 0.0016 34.5 3.3 26 261-288 125-150 (305)
497 2pt5_A Shikimate kinase, SK; a 23.1 35 0.0012 31.2 2.1 15 264-278 2-16 (168)
498 3lnc_A Guanylate kinase, GMP k 23.0 32 0.0011 33.6 2.0 23 261-283 26-48 (231)
499 3dl0_A Adenylate kinase; phosp 23.0 43 0.0015 32.2 2.9 19 265-283 3-21 (216)
500 3f9v_A Minichromosome maintena 22.9 32 0.0011 39.4 2.1 27 253-279 304-344 (595)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=5.8e-66 Score=584.48 Aligned_cols=390 Identities=41% Similarity=0.688 Sum_probs=361.7
Q ss_pred HcCceeccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhc
Q 003881 210 SLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMD 289 (789)
Q Consensus 210 ~~~i~v~~~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~ 289 (789)
...+.+.+.++|.|+.+|++++|++.++++|.+.||.+|||+|.++||.+++++|+|++++||||||++|++|++.+++.
T Consensus 41 ~~~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~ 120 (434)
T 2db3_A 41 NIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLE 120 (434)
T ss_dssp GSCEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CceeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHh
Confidence 44678899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccc
Q 003881 290 QPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALT 369 (789)
Q Consensus 290 ~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~ 369 (789)
.+......++++|||+|||+||.||++++++++...++++.+++||.....+...+..+++|+|+||++|.+++.+....
T Consensus 121 ~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~ 200 (434)
T 2db3_A 121 DPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFIT 200 (434)
T ss_dssp SCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCC
T ss_pred cccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcc
Confidence 65433455789999999999999999999999988889999999999998888888899999999999999999988888
Q ss_pred cCceeEEEEeccchhccCCChHHHHHHHhhc--CCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEE
Q 003881 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQI--RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVV 447 (789)
Q Consensus 370 l~~i~~lVvDEah~m~~~~f~~~i~~il~~l--~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~ 447 (789)
+.++++|||||||+|++++|...+..++..+ ++.+|+++||||+|+.+..++..++.++..+.++........+.+.+
T Consensus 201 l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~ 280 (434)
T 2db3_A 201 FEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTI 280 (434)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEE
T ss_pred cccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEE
Confidence 9999999999999999999999999999875 67899999999999999999999999999999888777788888888
Q ss_pred EecCCCcccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEee
Q 003881 448 HVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT 527 (789)
Q Consensus 448 ~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT 527 (789)
..+. ...|...|++++... ..++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||
T Consensus 281 ~~~~-~~~k~~~l~~~l~~~--~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT 357 (434)
T 2db3_A 281 YEVN-KYAKRSKLIEILSEQ--ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIAT 357 (434)
T ss_dssp EECC-GGGHHHHHHHHHHHC--CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEEC
T ss_pred EEeC-cHHHHHHHHHHHHhC--CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEc
Confidence 7774 456788888887754 3459999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEcc-ccHHHHHHHHHHHHHcCCCccHHHHH
Q 003881 528 DVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ-KEARFAGELVNSLIAAGQNVSMELMD 603 (789)
Q Consensus 528 ~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~-~d~~~~~~lv~~l~~~~q~vp~~l~~ 603 (789)
+++++|||||++++||+||+|+++..|+||+||+||.| +.|.|++|+++ .+..++.+|++.|..+++.||++|.+
T Consensus 358 ~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g-~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~ 433 (434)
T 2db3_A 358 SVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVG-NNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRT 433 (434)
T ss_dssp GGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTT-CCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC-
T ss_pred hhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCC-CCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHh
Confidence 99999999999999999999999999999999999999 68999999994 57889999999999999999999865
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.3e-59 Score=523.82 Aligned_cols=393 Identities=41% Similarity=0.698 Sum_probs=354.9
Q ss_pred ceeccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcc
Q 003881 213 IRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPE 292 (789)
Q Consensus 213 i~v~~~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~ 292 (789)
+.+.+..+|+++.+|++++|++.+++.|...||..|||+|.++|+.++.++|+|++++||+|||++|++|++.+++....
T Consensus 3 ~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~ 82 (417)
T 2i4i_A 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGP 82 (417)
T ss_dssp EEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCC
T ss_pred cccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccc
Confidence 55678899999999999999999999999999999999999999999999999999999999999999999998875421
Q ss_pred c-------------cccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHH
Q 003881 293 L-------------QKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL 359 (789)
Q Consensus 293 ~-------------~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L 359 (789)
. ....++++|||+||++||.|+++.+++++...++++..++||.....+...+..+++|+|+||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l 162 (417)
T 2i4i_A 83 GEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRL 162 (417)
T ss_dssp CHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHH
T ss_pred cchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHH
Confidence 1 112357899999999999999999999998888999999999999888888888999999999999
Q ss_pred HHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhc--CC--CceEEEEeccCcHHHHHHHHHHhCCCeEEeecc
Q 003881 360 IDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI--RP--DRQTLLFSATMPRKVEKLAREILSDPVRVTVGE 435 (789)
Q Consensus 360 ~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l--~~--~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~ 435 (789)
.+++....+.+..+++|||||||++.+++|...+..++... ++ .+|+++||||+++.+..++..++.++..+.+..
T Consensus 163 ~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 242 (417)
T 2i4i_A 163 VDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 242 (417)
T ss_dssp HHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC-
T ss_pred HHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCC
Confidence 99998888889999999999999999999999999998753 32 689999999999999999999999998888877
Q ss_pred ccCcccceeEEEEecCCCcccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHH
Q 003881 436 VGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQK 515 (789)
Q Consensus 436 ~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~ 515 (789)
.......+.+.+..+. ...+...|.+++......+++||||+++..++.+++.|...++.+..+||++++.+|..+++.
T Consensus 243 ~~~~~~~i~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~ 321 (417)
T 2i4i_A 243 VGSTSENITQKVVWVE-ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQ 321 (417)
T ss_dssp ---CCSSEEEEEEECC-GGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH
T ss_pred CCCCccCceEEEEEec-cHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHH
Confidence 7677777888777664 456778888888776567799999999999999999999999999999999999999999999
Q ss_pred hhcCCcceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHHHHHHcCC
Q 003881 516 FKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQ 595 (789)
Q Consensus 516 F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~l~~~~q 595 (789)
|++|+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.| +.|.|++|+++.+...+..+++.|...++
T Consensus 322 f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 400 (417)
T 2i4i_A 322 FRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVG-NLGLATSFFNERNINITKDLLDLLVEAKQ 400 (417)
T ss_dssp HHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC---CCEEEEEEECGGGGGGHHHHHHHHHHTTC
T ss_pred HHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCC-CCceEEEEEccccHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999 67999999999999999999999999999
Q ss_pred CccHHHHHHHHh
Q 003881 596 NVSMELMDLAMK 607 (789)
Q Consensus 596 ~vp~~l~~~a~~ 607 (789)
.+|.+|.+++..
T Consensus 401 ~~~~~l~~~~~~ 412 (417)
T 2i4i_A 401 EVPSWLENMAYE 412 (417)
T ss_dssp CCCHHHHHHHTC
T ss_pred cCCHHHHHHHHh
Confidence 999999998863
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.9e-56 Score=500.22 Aligned_cols=372 Identities=31% Similarity=0.535 Sum_probs=340.0
Q ss_pred CCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCC
Q 003881 220 VPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGP 299 (789)
Q Consensus 220 ~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp 299 (789)
.+.+..+|++++|++.+++.|.+.||.+|+|+|.++++.++++++++++++||+|||++|++|++.++... ..++
T Consensus 32 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~ 106 (410)
T 2j0s_A 32 EVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ-----VRET 106 (410)
T ss_dssp TCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT-----SCSC
T ss_pred CccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc-----cCCc
Confidence 34567889999999999999999999999999999999999999999999999999999999999876322 3467
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEe
Q 003881 300 IGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLD 379 (789)
Q Consensus 300 ~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvD 379 (789)
++|||+||++|+.||++++.++....++.+..++|+.....+...+..+++|+|+||++|.+++....+.+..+++||||
T Consensus 107 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViD 186 (410)
T 2j0s_A 107 QALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLD 186 (410)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEc
Confidence 89999999999999999999999888999999999999988888888899999999999999998888888999999999
Q ss_pred ccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHH
Q 003881 380 EADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPW 459 (789)
Q Consensus 380 Eah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~ 459 (789)
|||+|.+++|...+..++..+++.+|+++||||+++.+..++..++.+|..+.+.........+.+.+..+.....|...
T Consensus 187 Eah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 266 (410)
T 2j0s_A 187 EADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDT 266 (410)
T ss_dssp THHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHH
T ss_pred cHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHH
Confidence 99999999999999999999999999999999999999888999999999888777777777888888888766667777
Q ss_pred HHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCc
Q 003881 460 LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSI 539 (789)
Q Consensus 460 L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v 539 (789)
|..++... ..+++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++
T Consensus 267 l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v 345 (410)
T 2j0s_A 267 LCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQV 345 (410)
T ss_dssp HHHHHHHH-TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTE
T ss_pred HHHHHHhc-CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccC
Confidence 77776543 45699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHHHHHHcCCCcc
Q 003881 540 KSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVS 598 (789)
Q Consensus 540 ~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~l~~~~q~vp 598 (789)
++||+||+|+++..|+||+||+||.| +.|.|++|+++.+...+.++.+.+......+|
T Consensus 346 ~~Vi~~~~p~s~~~~~Qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 403 (410)
T 2j0s_A 346 SLIINYDLPNNRELYIHRIGRSGRYG-RKGVAINFVKNDDIRILRDIEQYYSTQIDEMP 403 (410)
T ss_dssp EEEEESSCCSSHHHHHHHHTTSSGGG-CCEEEEEEEEGGGHHHHHHHHHHTTCCCEECC
T ss_pred CEEEEECCCCCHHHHHHhcccccCCC-CceEEEEEecHHHHHHHHHHHHHhCCCceecc
Confidence 99999999999999999999999999 67999999999999999888887766555554
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=3.4e-55 Score=491.40 Aligned_cols=380 Identities=31% Similarity=0.527 Sum_probs=331.7
Q ss_pred CCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccC
Q 003881 218 FDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEE 297 (789)
Q Consensus 218 ~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~ 297 (789)
...+..+.+|.++++++.+++.|.+.+|..|+|+|.++++.+++++++|++++||+|||++|++|++.++... ..
T Consensus 33 ~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~ 107 (414)
T 3eiq_A 33 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-----LK 107 (414)
T ss_dssp CCCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT-----SC
T ss_pred CCccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc-----CC
Confidence 3456677899999999999999999999999999999999999999999999999999999999999887442 24
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHh-cCCcEEEeChHHHHHHHhhcccccCceeEE
Q 003881 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK-AGCEIVIATPGRLIDMLKMKALTMSRVTYL 376 (789)
Q Consensus 298 gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~-~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~l 376 (789)
++++|||+||++|+.|+++.+++++...++.+..++|+.....+...+. .+++|+|+||++|.+++....+.+..+++|
T Consensus 108 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~v 187 (414)
T 3eiq_A 108 ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMF 187 (414)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEE
T ss_pred ceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEE
Confidence 6779999999999999999999999888999999999998887777776 678999999999999998888888999999
Q ss_pred EEeccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCccc
Q 003881 377 VLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEK 456 (789)
Q Consensus 377 VvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k 456 (789)
||||||++.+++|...+..++..+++..|+++||||+++.+..++..++.++..+.+.........+.+.+..+.....+
T Consensus 188 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (414)
T 3eiq_A 188 VLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWK 267 (414)
T ss_dssp EECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTH
T ss_pred EEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhH
Confidence 99999999999999999999999999999999999999999999999999999888877777777888888888777778
Q ss_pred HHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCC
Q 003881 457 LPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDI 536 (789)
Q Consensus 457 ~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI 536 (789)
...+..++... ..+++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+
T Consensus 268 ~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 346 (414)
T 3eiq_A 268 LDTLCDLYETL-TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDV 346 (414)
T ss_dssp HHHHHHHHHSS-CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCG
T ss_pred HHHHHHHHHhC-CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCc
Confidence 88888877654 45799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHHHHHHcCCCccHHHHHH
Q 003881 537 KSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDL 604 (789)
Q Consensus 537 ~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~l~~~~q~vp~~l~~~ 604 (789)
|++++||+|++|+++..|+||+||+||.| +.|.|++|+++.+...+..+.+.+......+|..+.++
T Consensus 347 p~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 413 (414)
T 3eiq_A 347 QQVSLVINYDLPTNRENYIHRIGRGGRFG-RKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADL 413 (414)
T ss_dssp GGCSCEEESSCCSSTHHHHHHSCCC--------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-----
T ss_pred cCCCEEEEeCCCCCHHHhhhhcCcccCCC-CCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhc
Confidence 99999999999999999999999999999 67999999999999999999999888888888776654
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=5.9e-53 Score=471.54 Aligned_cols=370 Identities=29% Similarity=0.503 Sum_probs=326.2
Q ss_pred CCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeE
Q 003881 222 RPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIG 301 (789)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~v 301 (789)
.+..+|++++|++.+++.|.+.||.+|+|+|.++++.++++++++++++||+|||++|++|++.++... ..++++
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~~ 92 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK-----LNKIQA 92 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SCSCCE
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc-----cCCccE
Confidence 445789999999999999999999999999999999999999999999999999999999999886432 245679
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEecc
Q 003881 302 VICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEA 381 (789)
Q Consensus 302 LIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEa 381 (789)
|||+||++|+.||++.+++++...++++..++|+.....+...+...++|+|+||++|..++......+.++++||||||
T Consensus 93 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEa 172 (400)
T 1s2m_A 93 LIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEA 172 (400)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESH
T ss_pred EEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCc
Confidence 99999999999999999999988899999999999888777777778999999999999999887778899999999999
Q ss_pred chhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHHHH
Q 003881 382 DRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLL 461 (789)
Q Consensus 382 h~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~ 461 (789)
|++.+.+|...+..++..+++..|+++||||++..+..++..++..|..+.+... .....+.+.+..+ ....|...+.
T Consensus 173 H~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~k~~~l~ 250 (400)
T 1s2m_A 173 DKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE-LTLKGITQYYAFV-EERQKLHCLN 250 (400)
T ss_dssp HHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS-CBCTTEEEEEEEC-CGGGHHHHHH
T ss_pred hHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc-cccCCceeEEEEe-chhhHHHHHH
Confidence 9999888888899999999889999999999999999999999998877655432 3344566665555 3455666666
Q ss_pred HhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccE
Q 003881 462 EKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKS 541 (789)
Q Consensus 462 ~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~ 541 (789)
.++... ..+++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 251 ~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~ 329 (400)
T 1s2m_A 251 TLFSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNV 329 (400)
T ss_dssp HHHHHS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEE
T ss_pred HHHhhc-CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCE
Confidence 666543 4579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHHHHHHcCCCccHH
Q 003881 542 VVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSME 600 (789)
Q Consensus 542 VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~l~~~~q~vp~~ 600 (789)
||+|++|+++..|+||+||+||.| +.|.|++|+++.+...+..+.+.+....+.+|.+
T Consensus 330 Vi~~~~p~s~~~~~Qr~GR~gR~g-~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 387 (400)
T 1s2m_A 330 VINFDFPKTAETYLHRIGRSGRFG-HLGLAINLINWNDRFNLYKIEQELGTEIAAIPAT 387 (400)
T ss_dssp EEESSCCSSHHHHHHHHCBSSCTT-CCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSS
T ss_pred EEEeCCCCCHHHHHHhcchhcCCC-CCceEEEEeccchHHHHHHHHHHhCCCccccccc
Confidence 999999999999999999999999 6899999999999988888888776555555543
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=2.3e-52 Score=464.81 Aligned_cols=367 Identities=28% Similarity=0.483 Sum_probs=319.3
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEE
Q 003881 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (789)
Q Consensus 225 ~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl 304 (789)
.+|++++|++.+++.|...||..|+|+|.++++.++.+++++++++||+|||++|++|++..+... ..++++|||
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~~~lil 82 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVSVLVM 82 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC-----TTCCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc-----CCCeeEEEE
Confidence 569999999999999999999999999999999999999999999999999999999999876432 245689999
Q ss_pred cCcHHHHHHHHHHHHHHhhhc-CCeEEEEECCCChHHHHHHHhcC-CcEEEeChHHHHHHHhhcccccCceeEEEEeccc
Q 003881 305 APTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD 382 (789)
Q Consensus 305 ~PtreLa~Qi~~~~~~~~~~~-~i~v~~~~gg~~~~~~~~~l~~~-~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah 382 (789)
+||++|+.||.+++.++.... ++++..++|+.........+..+ ++|+|+||++|..++......+..+++|||||||
T Consensus 83 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH 162 (391)
T 1xti_A 83 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD 162 (391)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHH
Confidence 999999999999999998765 78999999998887776666554 7999999999999998887889999999999999
Q ss_pred hhccC-CChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeecccc-CcccceeEEEEecCCCcccHHHH
Q 003881 383 RMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVG-MANEDITQVVHVIPSDAEKLPWL 460 (789)
Q Consensus 383 ~m~~~-~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~-~~~~~i~q~~~~~~~~~~k~~~L 460 (789)
++.++ ++...+..++..++...|+++||||+++.+..++..++.+|..+.+.... .....+.+.+..+ ....+...+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l 241 (391)
T 1xti_A 163 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKL-KDNEKNRKL 241 (391)
T ss_dssp HHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEEC-CGGGHHHHH
T ss_pred HHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEc-CchhHHHHH
Confidence 99884 67788888888888899999999999999999999999999887765433 2334555555554 345677777
Q ss_pred HHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCcc
Q 003881 461 LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIK 540 (789)
Q Consensus 461 ~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~ 540 (789)
..++... ..+++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 242 ~~~l~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~ 320 (391)
T 1xti_A 242 FDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVN 320 (391)
T ss_dssp HHHHHHS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEE
T ss_pred HHHHHhc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCC
Confidence 7766654 567999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccc-cHHHHHHHHHHHHHcCCCccH
Q 003881 541 SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK-EARFAGELVNSLIAAGQNVSM 599 (789)
Q Consensus 541 ~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~-d~~~~~~lv~~l~~~~q~vp~ 599 (789)
+||+|++|+++..|+||+||+||.| +.|.|++|+++. +..++..+.+.+....+.+|.
T Consensus 321 ~Vi~~~~p~s~~~~~Qr~GR~~R~g-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (391)
T 1xti_A 321 IAFNYDMPEDSDTYLHRVARAGRFG-TKGLAITFVSDENDAKILNDVQDRFEVNISELPD 379 (391)
T ss_dssp EEEESSCCSSHHHHHHHHCBCSSSC-CCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCS
T ss_pred EEEEeCCCCCHHHHHHhcccccCCC-CceEEEEEEcccchHHHHHHHHHHhcCChhhCCc
Confidence 9999999999999999999999999 689999999876 455666666666555555554
No 7
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=5.8e-54 Score=477.82 Aligned_cols=377 Identities=30% Similarity=0.518 Sum_probs=192.5
Q ss_pred CCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCC
Q 003881 219 DVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEG 298 (789)
Q Consensus 219 ~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~g 298 (789)
...+++.+|++++|++.+++.|...||..|+|+|.++++.++.+++++++++||+|||++|++|++.++... ..+
T Consensus 15 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~-----~~~ 89 (394)
T 1fuu_A 15 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VKA 89 (394)
T ss_dssp SSCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----CCS
T ss_pred hcccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc-----CCC
Confidence 356778899999999999999999999999999999999999999999999999999999999999886442 346
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEE
Q 003881 299 PIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVL 378 (789)
Q Consensus 299 p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVv 378 (789)
+++|||+||++|+.||++.+.+++...++++..++|+.........+. +++|+|+||++|...+......+.++++|||
T Consensus 90 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIi 168 (394)
T 1fuu_A 90 PQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 168 (394)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 789999999999999999999999888899999999988776655554 5899999999999999888788889999999
Q ss_pred eccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHH
Q 003881 379 DEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLP 458 (789)
Q Consensus 379 DEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~ 458 (789)
||||++.+++|...+..++..+++..|+++||||+++.+..++..++.+|..+.+.........+.+.+..+.....+..
T Consensus 169 DEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (394)
T 1fuu_A 169 DEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYE 248 (394)
T ss_dssp ETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------------
T ss_pred EChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHH
Confidence 99999999999999999999999999999999999999999999999999988876655555666666665555445666
Q ss_pred HHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCC
Q 003881 459 WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKS 538 (789)
Q Consensus 459 ~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~ 538 (789)
.+..++... ..+++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 249 ~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~ 327 (394)
T 1fuu_A 249 CLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQ 327 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcC-CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCccc
Confidence 666665543 4579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHHHHHHcCCCccHHHHH
Q 003881 539 IKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMD 603 (789)
Q Consensus 539 v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~l~~~~q~vp~~l~~ 603 (789)
+++||+|++|+++..|+||+||+||.| +.|.|++|+++.+...+..+.+.+......+|..+.+
T Consensus 328 ~~~Vi~~~~p~s~~~~~Qr~GR~~R~g-~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 391 (394)
T 1fuu_A 328 VSLVINYDLPANKENYIHRIGRGGRFG-RKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIAT 391 (394)
T ss_dssp -----------------------------------------------------------------
T ss_pred CCEEEEeCCCCCHHHHHHHcCcccCCC-CCceEEEEEchhHHHHHHHHHHHhCCcccccCcchhh
Confidence 999999999999999999999999999 6799999999999988888888877776666665543
No 8
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=8.9e-52 Score=459.68 Aligned_cols=358 Identities=30% Similarity=0.524 Sum_probs=316.7
Q ss_pred CCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC--CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCC
Q 003881 222 RPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGP 299 (789)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~g--rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp 299 (789)
+...+|++++|++.+++.|.+.+|..|+|+|.++++.++.+ +++|+++|||+|||++|++|++.++... ..++
T Consensus 2 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~~~ 76 (395)
T 3pey_A 2 AMAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE-----DASP 76 (395)
T ss_dssp --CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----CCSC
T ss_pred ccccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC-----CCCc
Confidence 34688999999999999999999999999999999999998 9999999999999999999999886432 3467
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEe
Q 003881 300 IGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLD 379 (789)
Q Consensus 300 ~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvD 379 (789)
++|||+||++|+.|+++.++++....++.+..++++...... ..+++|+|+||++|..++......+.++++||||
T Consensus 77 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiD 152 (395)
T 3pey_A 77 QAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLD 152 (395)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEE
T ss_pred cEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEE
Confidence 899999999999999999999988888888888887654322 2368999999999999998888889999999999
Q ss_pred ccchhcc-CCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHH
Q 003881 380 EADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLP 458 (789)
Q Consensus 380 Eah~m~~-~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~ 458 (789)
|||++.+ +++...+..++..+++..|+++||||+++.+..++..++.++..+.+.........+.+.+..+.....+..
T Consensus 153 Eah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (395)
T 3pey_A 153 EADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFD 232 (395)
T ss_dssp THHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHH
T ss_pred ChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHH
Confidence 9999988 678888889999999999999999999999999999999999888877777777778888877766667777
Q ss_pred HHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCC
Q 003881 459 WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKS 538 (789)
Q Consensus 459 ~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~ 538 (789)
.+..++... ..+++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 233 ~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 311 (395)
T 3pey_A 233 VLTELYGLM-TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPT 311 (395)
T ss_dssp HHHHHHTTT-TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTT
T ss_pred HHHHHHHhc-cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCccc
Confidence 777766654 5679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEcCCC------CHHHHHHHHhhcCCCCCCCcEEEEEEccccH-HHHHHHHHHH
Q 003881 539 IKSVVNFDIAR------DMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA-RFAGELVNSL 590 (789)
Q Consensus 539 v~~VI~~d~p~------s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~-~~~~~lv~~l 590 (789)
+++||+||+|+ ++..|+||+||+||.| +.|.|++|+...+. .+...+.+.+
T Consensus 312 ~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~~i~~~~ 369 (395)
T 3pey_A 312 VSMVVNYDLPTLANGQADPATYIHRIGRTGRFG-RKGVAISFVHDKNSFNILSAIQKYF 369 (395)
T ss_dssp EEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTT-CCEEEEEEECSHHHHHHHHHHHHHT
T ss_pred CCEEEEcCCCCCCcCCCCHHHhhHhccccccCC-CCceEEEEEechHHHHHHHHHHHHh
Confidence 99999999999 9999999999999999 67999999987554 3444443333
No 9
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=5.2e-52 Score=464.86 Aligned_cols=369 Identities=29% Similarity=0.453 Sum_probs=322.9
Q ss_pred CCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC--CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCC
Q 003881 221 PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEG 298 (789)
Q Consensus 221 P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~g--rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~g 298 (789)
+.++.+|+++++++.+++.|.+.||..|+|+|.++++.++.+ +++|+++|||+|||++|++|++.++... ..+
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~~ 95 (412)
T 3fht_A 21 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKY 95 (412)
T ss_dssp TCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SCS
T ss_pred ccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc-----CCC
Confidence 356889999999999999999999999999999999999997 9999999999999999999999887543 346
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHHhhhc-CCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhh-cccccCceeEE
Q 003881 299 PIGVICAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM-KALTMSRVTYL 376 (789)
Q Consensus 299 p~vLIl~PtreLa~Qi~~~~~~~~~~~-~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~-~~~~l~~i~~l 376 (789)
+++|||+||++|+.|+++.++++.... ++.+.+..++....... ...++|+|+||++|.+++.. ..+.+.++++|
T Consensus 96 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~i 172 (412)
T 3fht_A 96 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 172 (412)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSCGGGCCEE
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcChhhCcEE
Confidence 689999999999999999999997654 67788888876544321 34579999999999999865 56678899999
Q ss_pred EEeccchhcc-CCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcc
Q 003881 377 VLDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAE 455 (789)
Q Consensus 377 VvDEah~m~~-~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~ 455 (789)
||||||++.+ .++...+..++..++...|+++||||+++.+..++..++.++..+.+.........+.+.+..+.....
T Consensus 173 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (412)
T 3fht_A 173 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE 252 (412)
T ss_dssp EEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHH
T ss_pred EEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHH
Confidence 9999999987 688888999999999999999999999999999999999999998887777777888888888877677
Q ss_pred cHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCC
Q 003881 456 KLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLD 535 (789)
Q Consensus 456 k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlD 535 (789)
+...+..++... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||
T Consensus 253 ~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 331 (412)
T 3fht_A 253 KFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGID 331 (412)
T ss_dssp HHHHHHHHHHHH-SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCC
T ss_pred HHHHHHHHHhhc-CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCC
Confidence 777777766543 4569999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEEcCCC------CHHHHHHHHhhcCCCCCCCcEEEEEEcccc-HHHHHHHHHHHHHcCCCccH
Q 003881 536 IKSIKSVVNFDIAR------DMDMHVHRIGRTGRAGDKDGTAYTLVTQKE-ARFAGELVNSLIAAGQNVSM 599 (789)
Q Consensus 536 I~~v~~VI~~d~p~------s~~~yiQriGR~gR~G~k~G~~i~lv~~~d-~~~~~~lv~~l~~~~q~vp~ 599 (789)
+|++++||+||+|+ +...|+||+||+||.| +.|.|++|++..+ ...+..+.+.+......++.
T Consensus 332 ip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 401 (412)
T 3fht_A 332 VEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFG-KRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDT 401 (412)
T ss_dssp CTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTT-CCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC--
T ss_pred ccCCCEEEEECCCCCCCCCcchheeecccCcccCCC-CCceEEEEEcChhhHHHHHHHHHHHCCccccCCC
Confidence 99999999999995 6789999999999999 6799999998764 67777777777555555544
No 10
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=5.5e-52 Score=486.88 Aligned_cols=365 Identities=31% Similarity=0.465 Sum_probs=310.3
Q ss_pred CCCcccCC----CCHHHHHHHHHcCCCCCcHHHHHHHHHHH--cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccC
Q 003881 224 VKTFEDCG----FSTQLMHAISKQGYEKPTSIQCQALPIIL--SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEE 297 (789)
Q Consensus 224 i~sf~~~~----l~~~l~~~l~~~g~~~ptpiQ~~~i~~il--~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~ 297 (789)
..+|.++. |++.++++|...||..|||+|.++|+.++ .++++|++++||+|||++|++|++.++..... ....
T Consensus 16 ~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~-~~~~ 94 (579)
T 3sqw_A 16 EVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-DSQY 94 (579)
T ss_dssp CCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-SSTT
T ss_pred CcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc-cccC
Confidence 34555553 99999999999999999999999999999 78999999999999999999999999876532 1234
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHhhh----cCCeEEEEECCCChHHHHHHHhc-CCcEEEeChHHHHHHHhhc-ccccC
Q 003881 298 GPIGVICAPTRELAHQIYLETKKFAKS----HGIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMK-ALTMS 371 (789)
Q Consensus 298 gp~vLIl~PtreLa~Qi~~~~~~~~~~----~~i~v~~~~gg~~~~~~~~~l~~-~~dIiV~Tp~~L~~~l~~~-~~~l~ 371 (789)
++++|||+||++||.|+++++++++.. ..+.+..++|+.....+...+.. +++|||+||++|.+++... ...+.
T Consensus 95 ~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~ 174 (579)
T 3sqw_A 95 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFR 174 (579)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCT
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccc
Confidence 678999999999999999999998742 35778899999988888777754 7999999999999988764 45688
Q ss_pred ceeEEEEeccchhccCCChHHHHHHHhhcC-------CCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccc----cCcc
Q 003881 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIR-------PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEV----GMAN 440 (789)
Q Consensus 372 ~i~~lVvDEah~m~~~~f~~~i~~il~~l~-------~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~----~~~~ 440 (789)
.+++|||||||+|++++|...+..++..++ +.+|+++||||+++.+..++..++.++..+.+... ....
T Consensus 175 ~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~ 254 (579)
T 3sqw_A 175 FVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAH 254 (579)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSC
T ss_pred cCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccc
Confidence 899999999999999999999998887663 37799999999999999999999999877665432 2334
Q ss_pred cceeEEEEecCCCcccHHHH----HHhcCCCCCCCCEEEEecccccHHHHHHHHHHc---CCceeeccCCCCHHHHHHHH
Q 003881 441 EDITQVVHVIPSDAEKLPWL----LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK---GFKAAALHGDKDQASRMEIL 513 (789)
Q Consensus 441 ~~i~q~~~~~~~~~~k~~~L----~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~---g~~v~~lhg~~~~~eR~~~l 513 (789)
..+.+.+........+...+ ...+.......++||||+++..++.++..|... ++.+..+||+|++.+|..++
T Consensus 255 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~ 334 (579)
T 3sqw_A 255 ERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLV 334 (579)
T ss_dssp TTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHH
T ss_pred cccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHH
Confidence 45666666655433333333 333333334679999999999999999999987 89999999999999999999
Q ss_pred HHhhcCCcceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHHHH
Q 003881 514 QKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSL 590 (789)
Q Consensus 514 ~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~l 590 (789)
+.|++|+.+|||||+++++|||+|+|++||+|++|.++..|+||+||+||.| +.|.|++|+++.+..++..|.+..
T Consensus 335 ~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g-~~g~~i~~~~~~e~~~~~~l~~~~ 410 (579)
T 3sqw_A 335 KRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSG-KEGSSVLFICKDELPFVRELEDAK 410 (579)
T ss_dssp HHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTT-CCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred HHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCC-CCceEEEEEcccHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999 689999999999988887776543
No 11
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=5e-51 Score=449.06 Aligned_cols=356 Identities=35% Similarity=0.608 Sum_probs=318.7
Q ss_pred CCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC-CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEE
Q 003881 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (789)
Q Consensus 224 i~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~g-rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vL 302 (789)
..+|++++|++.+++.|.+.||.+|+|+|.++++.++++ ++++++++||+|||++|++|++..+.. ..++++|
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~------~~~~~~l 78 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE------NNGIEAI 78 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS------SSSCCEE
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc------cCCCcEE
Confidence 457999999999999999999999999999999999988 799999999999999999999887643 2467899
Q ss_pred EEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccc
Q 003881 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD 382 (789)
Q Consensus 303 Il~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah 382 (789)
||+||++|+.||++++.++....++++..++|+.....+...+. .++|+|+||++|...+......+.++++|||||||
T Consensus 79 il~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah 157 (367)
T 1hv8_A 79 ILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEAD 157 (367)
T ss_dssp EECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHH
T ss_pred EEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCch
Confidence 99999999999999999998878899999999988877766655 69999999999999998887888999999999999
Q ss_pred hhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHHHHH
Q 003881 383 RMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462 (789)
Q Consensus 383 ~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~ 462 (789)
++.+++|...+..++..+++..+++++|||+++.+..++..++.++..+.... ...+.+.+..+ ....+...+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~l~~ 232 (367)
T 1hv8_A 158 EMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI----NANIEQSYVEV-NENERFEALCR 232 (367)
T ss_dssp HHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS----SSSSEEEEEEC-CGGGHHHHHHH
T ss_pred HhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC----CCCceEEEEEe-ChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988876655422 23455555554 45677888888
Q ss_pred hcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEE
Q 003881 463 KLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSV 542 (789)
Q Consensus 463 ~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~V 542 (789)
.+.. ...++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 233 ~l~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~V 310 (367)
T 1hv8_A 233 LLKN--KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCV 310 (367)
T ss_dssp HHCS--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEE
T ss_pred HHhc--CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEE
Confidence 8873 46799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHHHHHHcC
Q 003881 543 VNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAG 594 (789)
Q Consensus 543 I~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~l~~~~ 594 (789)
|+|++|+++..|+||+||+||.| +.|.+++++++.+...+..+.+.+...-
T Consensus 311 i~~~~~~s~~~~~Q~~GR~~R~g-~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 361 (367)
T 1hv8_A 311 INYHLPQNPESYMHRIGRTGRAG-KKGKAISIINRREYKKLRYIERAMKLKI 361 (367)
T ss_dssp EESSCCSCHHHHHHHSTTTCCSS-SCCEEEEEECTTSHHHHHHHHHHHTCCC
T ss_pred EEecCCCCHHHhhhcccccccCC-CccEEEEEEcHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999 6799999999999988888877774433
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=8.9e-52 Score=483.53 Aligned_cols=357 Identities=31% Similarity=0.475 Sum_probs=305.2
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHH--cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHH
Q 003881 232 FSTQLMHAISKQGYEKPTSIQCQALPIIL--SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRE 309 (789)
Q Consensus 232 l~~~l~~~l~~~g~~~ptpiQ~~~i~~il--~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~Ptre 309 (789)
|++.+++.|.+.||..|+|+|.++|+.++ .++|+|++++||+|||++|++|++.++...... ...++++|||+||++
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~-~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD-SQYMVKAVIVAPTRD 157 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS-STTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc-ccCCeeEEEEcCcHH
Confidence 99999999999999999999999999999 678999999999999999999999998765422 234578999999999
Q ss_pred HHHHHHHHHHHHhhh----cCCeEEEEECCCChHHHHHHHh-cCCcEEEeChHHHHHHHhhc-ccccCceeEEEEeccch
Q 003881 310 LAHQIYLETKKFAKS----HGIRVSAVYGGMSKLDQFKELK-AGCEIVIATPGRLIDMLKMK-ALTMSRVTYLVLDEADR 383 (789)
Q Consensus 310 La~Qi~~~~~~~~~~----~~i~v~~~~gg~~~~~~~~~l~-~~~dIiV~Tp~~L~~~l~~~-~~~l~~i~~lVvDEah~ 383 (789)
||.|+++.+++++.. ..+.+..++|+.....++..+. .+++|||+||++|.+++.+. ...+..+++|||||||+
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 237 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 237 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHH
Confidence 999999999998653 2467888999998887777664 47999999999999988764 44678899999999999
Q ss_pred hccCCChHHHHHHHhhcC-------CCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccc----cCcccceeEEEEecCC
Q 003881 384 MFDLGFEPQIRSIVGQIR-------PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEV----GMANEDITQVVHVIPS 452 (789)
Q Consensus 384 m~~~~f~~~i~~il~~l~-------~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~----~~~~~~i~q~~~~~~~ 452 (789)
|++++|...+..++..++ +.+|+++||||+++.+..++..++.++..+.+... ......+.+.+.....
T Consensus 238 l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (563)
T 3i5x_A 238 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 317 (563)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECch
Confidence 999999999998877663 37799999999999999999999998877665432 2334456666666554
Q ss_pred CcccHHHHH----HhcCCCCCCCCEEEEecccccHHHHHHHHHHc---CCceeeccCCCCHHHHHHHHHHhhcCCcceEE
Q 003881 453 DAEKLPWLL----EKLPGMIDDGDVLVFASKKTTVDEIESQLAQK---GFKAAALHGDKDQASRMEILQKFKSGVYHVLI 525 (789)
Q Consensus 453 ~~~k~~~L~----~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~---g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLV 525 (789)
...+...++ ..+.......++||||+++..++.++..|... ++.+..+||+|++.+|..+++.|++|+.+|||
T Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLv 397 (563)
T 3i5x_A 318 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 397 (563)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 434333333 33333345679999999999999999999987 89999999999999999999999999999999
Q ss_pred eehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHHHH
Q 003881 526 ATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSL 590 (789)
Q Consensus 526 aT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~l 590 (789)
||+++++|||+|+|++||+||+|.++..|+||+||+||.| +.|.|++|+++.+..++..|.+.+
T Consensus 398 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g-~~g~~i~~~~~~e~~~~~~l~~~~ 461 (563)
T 3i5x_A 398 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSG-KEGSSVLFICKDELPFVRELEDAK 461 (563)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTT-CCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred EcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCC-CCceEEEEEchhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999 689999999999988887776654
No 13
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=5.1e-53 Score=484.37 Aligned_cols=367 Identities=29% Similarity=0.459 Sum_probs=178.6
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC--CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCe
Q 003881 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPI 300 (789)
Q Consensus 223 pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~g--rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~ 300 (789)
++.+|.+++|++.+++.|.+.||..|+|+|.++++.++.+ +++|++++||||||++|++|++.++... ..+++
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~-----~~~~~ 164 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKYPQ 164 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT-----SCSCC
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc-----CCCCc
Confidence 4678999999999999999999999999999999999987 9999999999999999999999876443 34668
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhhc-CCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhh-cccccCceeEEEE
Q 003881 301 GVICAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM-KALTMSRVTYLVL 378 (789)
Q Consensus 301 vLIl~PtreLa~Qi~~~~~~~~~~~-~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~-~~~~l~~i~~lVv 378 (789)
+|||+||++||.|+++.++++.... ++.+.+.+++....... ...++|+|+||++|.+++.. ..+.+.++.+|||
T Consensus 165 ~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 241 (479)
T 3fmp_B 165 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (479)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEE
T ss_pred EEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc---cCCCCEEEECchHHHHHHHhcCCcCcccCCEEEE
Confidence 9999999999999999999987653 57777777776543221 23579999999999999865 4567889999999
Q ss_pred eccchhcc-CCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccH
Q 003881 379 DEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKL 457 (789)
Q Consensus 379 DEah~m~~-~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~ 457 (789)
||||+|++ .+|...+..++..++..+|+|+||||+++.+..++..++.+|..+.+.........+.+.+..+.....+.
T Consensus 242 DEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (479)
T 3fmp_B 242 DEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKF 321 (479)
T ss_dssp CCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-----------------------
T ss_pred ECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHH
Confidence 99999987 67888888999999999999999999999999999999999998888777777777888877776666677
Q ss_pred HHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCC
Q 003881 458 PWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIK 537 (789)
Q Consensus 458 ~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~ 537 (789)
..|..++... ..+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|
T Consensus 322 ~~l~~~~~~~-~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip 400 (479)
T 3fmp_B 322 QALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVE 400 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhhc-cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccc
Confidence 7776666543 456999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEcCCC------CHHHHHHHHhhcCCCCCCCcEEEEEEcccc-HHHHHHHHHHHHHcCCCccH
Q 003881 538 SIKSVVNFDIAR------DMDMHVHRIGRTGRAGDKDGTAYTLVTQKE-ARFAGELVNSLIAAGQNVSM 599 (789)
Q Consensus 538 ~v~~VI~~d~p~------s~~~yiQriGR~gR~G~k~G~~i~lv~~~d-~~~~~~lv~~l~~~~q~vp~ 599 (789)
++++||+||+|+ +...|+||+||+||.| +.|.|++|+++.+ ..++..+.+.+...-..++.
T Consensus 401 ~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g-~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 468 (479)
T 3fmp_B 401 QVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFG-KRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDT 468 (479)
T ss_dssp ---------------------------------------------------------------------
T ss_pred cCCEEEEecCCCCCccCCCHHHHHHHhcccccCC-CCceEEEEEcCcchHHHHHHHHHHhCCCceECCC
Confidence 999999999995 5689999999999999 6899999998765 66666666666555444443
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.7e-49 Score=428.51 Aligned_cols=335 Identities=32% Similarity=0.574 Sum_probs=291.8
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHH
Q 003881 232 FSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (789)
Q Consensus 232 l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa 311 (789)
|++.+.+.|.+.||..|+|+|.++++.+++++++++++|||+|||++|++|++.. ++++|||+||++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-----------~~~~liv~P~~~L~ 69 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-----------GMKSLVVTPTRELT 69 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----------TCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-----------cCCEEEEeCCHHHH
Confidence 5788999999999999999999999999999999999999999999999998763 46699999999999
Q ss_pred HHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChH
Q 003881 312 HQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEP 391 (789)
Q Consensus 312 ~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~ 391 (789)
.||++.++++....++++..++|+.....+...+. .++|+|+||++|..++......+..+++|||||||++.+++|..
T Consensus 70 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~ 148 (337)
T 2z0m_A 70 RQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFID 148 (337)
T ss_dssp HHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHH
Confidence 99999999998888899999999988877666654 49999999999999988877788999999999999999999999
Q ss_pred HHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHHHHHhcCCCCCCC
Q 003881 392 QIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDG 471 (789)
Q Consensus 392 ~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~ 471 (789)
.+..++..++...++++||||+++.+...+..++.++..+... .....+.+.+..+.... ...+..+.. ...+
T Consensus 149 ~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~ 221 (337)
T 2z0m_A 149 DIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDW---RSKVQALRE-NKDK 221 (337)
T ss_dssp HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSS---HHHHHHHHT-CCCS
T ss_pred HHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHH---HHHHHHHHh-CCCC
Confidence 9999999999999999999999999999999999888766432 33445566655554332 222233332 2467
Q ss_pred CEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEcCCCCH
Q 003881 472 DVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDM 551 (789)
Q Consensus 472 kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~ 551 (789)
++||||+++..++.+++.|. .+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|+++
T Consensus 222 ~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~ 297 (337)
T 2z0m_A 222 GVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDL 297 (337)
T ss_dssp SEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSH
T ss_pred cEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCH
Confidence 99999999999999999886 58899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHHHHH
Q 003881 552 DMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLI 591 (789)
Q Consensus 552 ~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~l~ 591 (789)
..|+||+||+||.| +.|.|++|+. .+..+...+.+.+.
T Consensus 298 ~~~~Q~~GR~gR~g-~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 298 RTYIHRIGRTGRMG-RKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp HHHHHHHTTBCGGG-CCEEEEEEES-SCHHHHHHHC----
T ss_pred HHhhHhcCccccCC-CCceEEEEEe-CcHHHHHHHHHHhc
Confidence 99999999999999 6799999999 88777777766653
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.6e-47 Score=447.30 Aligned_cols=346 Identities=18% Similarity=0.302 Sum_probs=286.1
Q ss_pred CCCcc--cCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCe
Q 003881 224 VKTFE--DCGFSTQLMHAISK-QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPI 300 (789)
Q Consensus 224 i~sf~--~~~l~~~l~~~l~~-~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~ 300 (789)
...|. ++++++.+.+.|++ .||..|+|+|.++|+.+++++|+|+++|||+|||++|++|++.. .+.
T Consensus 18 ~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~-----------~g~ 86 (591)
T 2v1x_A 18 PAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS-----------DGF 86 (591)
T ss_dssp GGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS-----------SSE
T ss_pred hhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc-----------CCc
Confidence 34444 47888999999998 59999999999999999999999999999999999999999752 457
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHH---H---hcCCcEEEeChHHHH------HHHhhccc
Q 003881 301 GVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---L---KAGCEIVIATPGRLI------DMLKMKAL 368 (789)
Q Consensus 301 vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~---l---~~~~dIiV~Tp~~L~------~~l~~~~~ 368 (789)
+|||+|+++|+.|+++.+.++ ++.+..++++....+.... + ...++|+|+||++|. +.+. ...
T Consensus 87 ~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~-~~~ 161 (591)
T 2v1x_A 87 TLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLE-KAY 161 (591)
T ss_dssp EEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHH-HHH
T ss_pred EEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHH-hhh
Confidence 999999999999999999887 7899999998876654322 2 346899999999874 2232 244
Q ss_pred ccCceeEEEEeccchhccCC--ChHHHHH--HHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccee
Q 003881 369 TMSRVTYLVLDEADRMFDLG--FEPQIRS--IVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDIT 444 (789)
Q Consensus 369 ~l~~i~~lVvDEah~m~~~~--f~~~i~~--il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~ 444 (789)
.+..+.+|||||||++.+|+ |.+.+.. ++....+..++|+||||+++.+...+..++..+..+.+.. .....++.
T Consensus 162 ~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~~r~nl~ 240 (591)
T 2v1x_A 162 EARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SFNRPNLY 240 (591)
T ss_dssp HTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CCCCTTEE
T ss_pred hccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CCCCcccE
Confidence 57789999999999999998 7776654 4555567899999999999998888888877654333322 22333444
Q ss_pred EEEEecCC-CcccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcce
Q 003881 445 QVVHVIPS-DAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHV 523 (789)
Q Consensus 445 q~~~~~~~-~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~V 523 (789)
..+..... ...+...|++.+......+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++|
T Consensus 241 ~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~V 320 (591)
T 2v1x_A 241 YEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQV 320 (591)
T ss_dssp EEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSE
T ss_pred EEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeE
Confidence 43333222 23455677777776556779999999999999999999999999999999999999999999999999999
Q ss_pred EEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHH
Q 003881 524 LIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELV 587 (789)
Q Consensus 524 LVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv 587 (789)
||||+++++|||+|+|++||+|++|.+++.|+||+||+||.| +.|.|++|+++.|...+..++
T Consensus 321 lVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G-~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 321 VVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDD-MKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp EEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTS-SCEEEEEEECHHHHHHHHHHT
T ss_pred EEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCC-CCceEEEEEChHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 689999999988877665554
No 16
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-49 Score=458.83 Aligned_cols=371 Identities=29% Similarity=0.433 Sum_probs=267.9
Q ss_pred CCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC--CCEEEEccCCChhhHHHHHHHHHHHhcCccccc
Q 003881 218 FDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQK 295 (789)
Q Consensus 218 ~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~g--rdvll~a~TGsGKTla~llpil~~l~~~~~~~~ 295 (789)
...|.++..|...++++.+++.|.+.+|..|+++|.++++.++++ +++|++++||+|||++|+++++.++...
T Consensus 112 ~~~p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~----- 186 (508)
T 3fho_A 112 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS----- 186 (508)
T ss_dssp ---------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT-----
T ss_pred cccccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC-----
Confidence 334556667777889999999999999999999999999999998 9999999999999999999999887443
Q ss_pred cCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeE
Q 003881 296 EEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTY 375 (789)
Q Consensus 296 ~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~ 375 (789)
..++++|||+|+++|+.|+++.+++++...++.+...+++..... ....++|+|+||++|...+....+.+..+++
T Consensus 187 ~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~l 262 (508)
T 3fho_A 187 VPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQLDARDIKV 262 (508)
T ss_dssp CCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCE
T ss_pred CCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCCccccCCCE
Confidence 346689999999999999999999998777777766666543322 2346899999999999999888888999999
Q ss_pred EEEeccchhcc-CCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCc
Q 003881 376 LVLDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDA 454 (789)
Q Consensus 376 lVvDEah~m~~-~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~ 454 (789)
|||||||++.+ +++...+..++..+++..|+|++|||+++.+..++..++.++..+.+.........+.+.+..+....
T Consensus 263 IIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 342 (508)
T 3fho_A 263 FVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEE 342 (508)
T ss_dssp EEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CH
T ss_pred EEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchH
Confidence 99999999987 67999999999999999999999999999999999999999988877666666666777777776666
Q ss_pred ccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccC
Q 003881 455 EKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGL 534 (789)
Q Consensus 455 ~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGl 534 (789)
.+...+..++... ..+++||||+++..++.++..|.+.++.+..+||++++.+|..+++.|++|+.+|||||+++++|+
T Consensus 343 ~k~~~l~~ll~~~-~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~Gi 421 (508)
T 3fho_A 343 HKYNVLVELYGLL-TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGI 421 (508)
T ss_dssp HHHHHHHHHHC----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----C
T ss_pred HHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCC
Confidence 7777777777654 567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEEcCC------CCHHHHHHHHhhcCCCCCCCcEEEEEEcc-ccHHHHHHHHHHHHHcCCCccH
Q 003881 535 DIKSIKSVVNFDIA------RDMDMHVHRIGRTGRAGDKDGTAYTLVTQ-KEARFAGELVNSLIAAGQNVSM 599 (789)
Q Consensus 535 DI~~v~~VI~~d~p------~s~~~yiQriGR~gR~G~k~G~~i~lv~~-~d~~~~~~lv~~l~~~~q~vp~ 599 (789)
|+|++++||+|++| .++..|+||+||+||.| +.|.|++|+.. .+...+..+.+.+......++.
T Consensus 422 Dip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g-~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~ 492 (508)
T 3fho_A 422 DVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFG-RVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPT 492 (508)
T ss_dssp CCTTCCEEEC----CC-----CTHHHHHTTSCCC------CEEEEEECTTTSSSSHHHHHHHSCCCCC----
T ss_pred CccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCC-CCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCC
Confidence 99999999999999 78999999999999999 68999999985 4566666776666555555554
No 17
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=3.8e-47 Score=427.29 Aligned_cols=326 Identities=22% Similarity=0.302 Sum_probs=270.9
Q ss_pred HHHHHHHc-CCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHH
Q 003881 236 LMHAISKQ-GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI 314 (789)
Q Consensus 236 l~~~l~~~-g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi 314 (789)
+.+.+++. +| +|+|+|.++++.+++++|+++++|||+|||++|++|++..+ ..++++|||+||++|+.|+
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~--------~~~~~~lil~Pt~~L~~q~ 80 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--------RKGKKSALVFPTVTLVKQT 80 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH--------TTTCCEEEEESSHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh--------cCCCEEEEEECCHHHHHHH
Confidence 44555553 55 89999999999999999999999999999999999988765 3468899999999999999
Q ss_pred HHHHHHHhhhcCCeEEEEECCCCh---HHHHHHHhcC-CcEEEeChHHHHHHHhhcccccCceeEEEEeccchhc-----
Q 003881 315 YLETKKFAKSHGIRVSAVYGGMSK---LDQFKELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF----- 385 (789)
Q Consensus 315 ~~~~~~~~~~~~i~v~~~~gg~~~---~~~~~~l~~~-~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~----- 385 (789)
++.+++++. .++++..++|+... ..++..+..+ ++|+|+||++|.+++.. +.+..+++|||||||++.
T Consensus 81 ~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~ 157 (414)
T 3oiy_A 81 LERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRN 157 (414)
T ss_dssp HHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHH
T ss_pred HHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccch
Confidence 999999987 78999999999988 5566777776 99999999999888764 667799999999998654
Q ss_pred -----c-CCChHH-HHHHHhhcC-----------CCceEEEEecc-CcHHHH-HHHHHHhCCCeEEeeccccCcccceeE
Q 003881 386 -----D-LGFEPQ-IRSIVGQIR-----------PDRQTLLFSAT-MPRKVE-KLAREILSDPVRVTVGEVGMANEDITQ 445 (789)
Q Consensus 386 -----~-~~f~~~-i~~il~~l~-----------~~~q~ll~SAT-~~~~i~-~l~~~~l~~p~~i~i~~~~~~~~~i~q 445 (789)
+ ++|... +..++..++ +.+|+++|||| +|..+. .+...++. +.+.........+.+
T Consensus 158 ~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~ 233 (414)
T 3oiy_A 158 IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITH 233 (414)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEE
T ss_pred hhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchh
Confidence 4 788888 788888876 88999999999 565544 33444433 223333444556666
Q ss_pred EEEecCCCcccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCcee-eccCCCCHHHHHHHHHHhhcCCcceE
Q 003881 446 VVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAA-ALHGDKDQASRMEILQKFKSGVYHVL 524 (789)
Q Consensus 446 ~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~-~lhg~~~~~eR~~~l~~F~~G~~~VL 524 (789)
.+..+ .+...|..++.. ..+++||||+++..++.++..|...++.+. .+||. +|. ++.|++|+++||
T Consensus 234 ~~~~~----~~~~~l~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vL 301 (414)
T 3oiy_A 234 VRISS----RSKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINIL 301 (414)
T ss_dssp EEESS----CCHHHHHHHHHH--HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEE
T ss_pred eeecc----CHHHHHHHHHHH--cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEE
Confidence 66544 455666666655 247999999999999999999999999998 99995 444 999999999999
Q ss_pred Ee----ehhhhccCCCCC-ccEEEEEcCC--CCHHHHHHHHhhcCCCCC---CCcEEEEEEccccHHHHHHHHHHHH
Q 003881 525 IA----TDVAARGLDIKS-IKSVVNFDIA--RDMDMHVHRIGRTGRAGD---KDGTAYTLVTQKEARFAGELVNSLI 591 (789)
Q Consensus 525 Va----T~v~~rGlDI~~-v~~VI~~d~p--~s~~~yiQriGR~gR~G~---k~G~~i~lv~~~d~~~~~~lv~~l~ 591 (789)
|| |+++++|||+|+ |++||+||+| .++..|+||+||+||.|. +.|.+++|+ .+...+..+.+.+.
T Consensus 302 vat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 302 IGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp EEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred EEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 99 999999999999 9999999999 999999999999999984 479999999 67777777777776
No 18
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=9.4e-46 Score=427.65 Aligned_cols=342 Identities=19% Similarity=0.328 Sum_probs=278.9
Q ss_pred CCCcccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEE
Q 003881 224 VKTFEDCGFSTQLMHAISK-QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (789)
Q Consensus 224 i~sf~~~~l~~~l~~~l~~-~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vL 302 (789)
+.+|++++|++.+.+.|++ .||..|+|+|.++|+.+++++|+|+++|||+|||++|++|++.. .+.+|
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----------~g~~l 69 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----------NGLTV 69 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----------SSEEE
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-----------CCCEE
Confidence 3578999999999999998 79999999999999999999999999999999999999998742 35689
Q ss_pred EEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHH---HH-hcCCcEEEeChHHHHHHHhhcccccCceeEEEE
Q 003881 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---EL-KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVL 378 (789)
Q Consensus 303 Il~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~---~l-~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVv 378 (789)
||+|+++|+.|+++.++++ ++.+..++++........ .+ ...++|+|+||++|........+....+.+|||
T Consensus 70 vi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vVi 145 (523)
T 1oyw_A 70 VVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAV 145 (523)
T ss_dssp EECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEE
T ss_pred EECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEE
Confidence 9999999999999998875 788888888877654432 22 235899999999996432223344578999999
Q ss_pred eccchhccCC--ChHHHHHHH--hhcCCCceEEEEeccCcHHHHHHHHHHh--CCCeEEeeccccCcccceeEEEEecCC
Q 003881 379 DEADRMFDLG--FEPQIRSIV--GQIRPDRQTLLFSATMPRKVEKLAREIL--SDPVRVTVGEVGMANEDITQVVHVIPS 452 (789)
Q Consensus 379 DEah~m~~~~--f~~~i~~il--~~l~~~~q~ll~SAT~~~~i~~l~~~~l--~~p~~i~i~~~~~~~~~i~q~~~~~~~ 452 (789)
||||++.+|+ |.+.+..+. ....+..++++||||+++.+...+...+ .++..+ +.. ....++...+..
T Consensus 146 DEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~--~~r~~l~~~v~~--- 219 (523)
T 1oyw_A 146 DEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISS--FDRPNIRYMLME--- 219 (523)
T ss_dssp SSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEE-ECC--CCCTTEEEEEEE---
T ss_pred eCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE-eCC--CCCCceEEEEEe---
Confidence 9999999987 666655432 2223578999999999988765444443 344333 222 223334332222
Q ss_pred CcccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhc
Q 003881 453 DAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAAR 532 (789)
Q Consensus 453 ~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~r 532 (789)
...+...|++.+... ...++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++
T Consensus 220 ~~~~~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~ 298 (523)
T 1oyw_A 220 KFKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGM 298 (523)
T ss_dssp CSSHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCT
T ss_pred CCCHHHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhC
Confidence 245667777777543 4569999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHH
Q 003881 533 GLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVN 588 (789)
Q Consensus 533 GlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~ 588 (789)
|||+|+|++||+|++|+++..|+||+||+||.| +.|.|++|+++.|...+..++.
T Consensus 299 GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g-~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 299 GINKPNVRFVVHFDIPRNIESYYQETGRAGRDG-LPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp TTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTS-SCEEEEEEECHHHHHHHHHHHH
T ss_pred CCCccCccEEEEECCCCCHHHHHHHhccccCCC-CCceEEEEeCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999 6899999999988877666554
No 19
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.6e-45 Score=431.55 Aligned_cols=374 Identities=22% Similarity=0.251 Sum_probs=287.5
Q ss_pred cccCccccccccCChhhcCCCHHHHHHHHHHcCceeccCCCCCCCCCcccCCCCHHHHHHHH--------HcCCCCCcHH
Q 003881 180 IDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAIS--------KQGYEKPTSI 251 (789)
Q Consensus 180 ~~~~~f~k~fy~~~~~i~~~s~~~~~~~r~~~~i~v~~~~~P~pi~sf~~~~l~~~l~~~l~--------~~g~~~ptpi 251 (789)
..|.++.+.++...+.+..|+.+++.....++...+.... + |++.+.+++. ..|| .|||+
T Consensus 20 k~~~~~~~~in~~~~~~~~lsd~el~~~t~~~~~~~~~g~------~-----ld~~l~ea~a~vrea~~r~lG~-~pt~V 87 (844)
T 1tf5_A 20 NRYEKIANDIDAIRGDYENLSDDALKHKTIEFKERLEKGA------T-----TDDLLVEAFAVVREASRRVTGM-FPFKV 87 (844)
T ss_dssp CHHHHHHHHHHHTTHHHHTCCHHHHHHHHHHHHHHHHTTC------C-----HHHHHHHHHHHHHHHHHHHHSC-CCCHH
T ss_pred HHHHHHHHHHHhhhHHHHhCCHHHHHHHHHHHHHHHhcCC------C-----hHHHHHHHHHHHHHHHHHHcCC-CCcHH
Confidence 3467777888888999999999999877776654432111 1 2223333332 4799 99999
Q ss_pred HHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEE
Q 003881 252 QCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSA 331 (789)
Q Consensus 252 Q~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~ 331 (789)
|..++|.+++|+ |+.++||+|||++|++|++.+.+. ++.++||+||++||.|+.+++..++..+++++.+
T Consensus 88 Q~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~--------g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~ 157 (844)
T 1tf5_A 88 QLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT--------GKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGL 157 (844)
T ss_dssp HHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEE
Confidence 999999999998 999999999999999999865532 5679999999999999999999999999999999
Q ss_pred EECCCChHHHHHHHhcCCcEEEeChHHH-HHHHhhc------ccccCceeEEEEeccchhc-cCC---------------
Q 003881 332 VYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMK------ALTMSRVTYLVLDEADRMF-DLG--------------- 388 (789)
Q Consensus 332 ~~gg~~~~~~~~~l~~~~dIiV~Tp~~L-~~~l~~~------~~~l~~i~~lVvDEah~m~-~~~--------------- 388 (789)
++||.+...+ .+..++||+|+||++| ++++... .+.+..+.++||||||+|+ +.+
T Consensus 158 i~gg~~~~~r--~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~ 235 (844)
T 1tf5_A 158 NLNSMSKDEK--REAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTK 235 (844)
T ss_dssp CCTTSCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCH
T ss_pred EeCCCCHHHH--HHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchh
Confidence 9999876543 3345699999999999 6666532 4567899999999999998 764
Q ss_pred ChHHHHHHHhhcC---------CCceEE-----------------EEeccCcH---HHHHH--HHHHhC-CCeEE-----
Q 003881 389 FEPQIRSIVGQIR---------PDRQTL-----------------LFSATMPR---KVEKL--AREILS-DPVRV----- 431 (789)
Q Consensus 389 f~~~i~~il~~l~---------~~~q~l-----------------l~SAT~~~---~i~~l--~~~~l~-~p~~i----- 431 (789)
|...+..++..++ +.+|++ +||||++. .+... +..++. +...+
T Consensus 236 ~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~ 315 (844)
T 1tf5_A 236 LYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQ 315 (844)
T ss_dssp HHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTE
T ss_pred HHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCe
Confidence 5678899999987 368888 99999874 33333 222332 11111
Q ss_pred --eec-----------------------------cccCccccee------------------------------------
Q 003881 432 --TVG-----------------------------EVGMANEDIT------------------------------------ 444 (789)
Q Consensus 432 --~i~-----------------------------~~~~~~~~i~------------------------------------ 444 (789)
.+. ........|.
T Consensus 316 v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~I 395 (844)
T 1tf5_A 316 VVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTI 395 (844)
T ss_dssp EEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEEC
T ss_pred eEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEe
Confidence 000 0000000000
Q ss_pred ----------EEEEecCCCcccHHHHHHhcCCCC-CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHH
Q 003881 445 ----------QVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEIL 513 (789)
Q Consensus 445 ----------q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l 513 (789)
+...+......|+..|+..+.... ...++||||+++..++.|+..|...|+++.+|||++.+.+|..+.
T Consensus 396 Ptn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~ 475 (844)
T 1tf5_A 396 PTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIE 475 (844)
T ss_dssp CCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHT
T ss_pred cCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHH
Confidence 000112234567777777775432 345899999999999999999999999999999999888887666
Q ss_pred HHhhcCCcceEEeehhhhccCCCC--------CccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccH
Q 003881 514 QKFKSGVYHVLIATDVAARGLDIK--------SIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (789)
Q Consensus 514 ~~F~~G~~~VLVaT~v~~rGlDI~--------~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~ 580 (789)
..|+.| .|||||++++||+||+ ++.+||||+.|.+...|+||+||+||+| ++|.+++|++..|.
T Consensus 476 ~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG-~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 476 EAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQG-DPGITQFYLSMEDE 547 (844)
T ss_dssp TTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGG-CCEEEEEEEETTSS
T ss_pred HcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCC-CCCeEEEEecHHHH
Confidence 666665 6999999999999999 8889999999999999999999999999 78999999998774
No 20
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-45 Score=452.81 Aligned_cols=331 Identities=18% Similarity=0.200 Sum_probs=262.3
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEc
Q 003881 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305 (789)
Q Consensus 226 sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~ 305 (789)
.|..+++++.+...+....+..|+|+|.++|+.++.++++|++++||||||++|++|++..+ ..++++||++
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l--------~~g~rvlvl~ 234 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSL--------KNKQRVIYTS 234 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHH--------HTTCEEEEEE
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHH--------hcCCeEEEEc
Confidence 45555666665555556667789999999999999999999999999999999999999887 3467899999
Q ss_pred CcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhc
Q 003881 306 PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (789)
Q Consensus 306 PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~ 385 (789)
||++|+.|+++.+.+++. .+.+++|+.... .+++|+|+||++|.+++......+.++.+|||||||+|.
T Consensus 235 PtraLa~Q~~~~l~~~~~----~VglltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~ 303 (1108)
T 3l9o_A 235 PIKALSNQKYRELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMR 303 (1108)
T ss_dssp SSHHHHHHHHHHHHHHTS----SEEEECSSCBCC-------CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTT
T ss_pred CcHHHHHHHHHHHHHHhC----CccEEeCccccC-------CCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhcc
Confidence 999999999999999864 567788877643 358999999999999998887778999999999999999
Q ss_pred cCCChHHHHHHHhhcCCCceEEEEeccCcHH--HHHHHHHHhCCCeEEeeccccCcccceeEEEEecC---------CC-
Q 003881 386 DLGFEPQIRSIVGQIRPDRQTLLFSATMPRK--VEKLAREILSDPVRVTVGEVGMANEDITQVVHVIP---------SD- 453 (789)
Q Consensus 386 ~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~--i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~---------~~- 453 (789)
+++|...+..++..+++.+|+|+||||+|+. +..++..+...|..+....... ..+.+.+.... ..
T Consensus 304 d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp--~pl~~~~~~~~~~~~~~~vd~~~ 381 (1108)
T 3l9o_A 304 DKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP--TPLQHYLFPAHGDGIYLVVDEKS 381 (1108)
T ss_dssp SHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCS--SCEEEEEEETTSSCCEEEEETTT
T ss_pred ccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc--ccceEEEeecCCcceeeeecccc
Confidence 9999999999999999999999999999874 4455666666666555433221 12222221100 00
Q ss_pred --------------------------------------------cccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHH
Q 003881 454 --------------------------------------------AEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQ 489 (789)
Q Consensus 454 --------------------------------------------~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~ 489 (789)
..++..++..+... ..+++||||+++..|+.++..
T Consensus 382 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~-~~~~vIVF~~sr~~~e~la~~ 460 (1108)
T 3l9o_A 382 TFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK-KYNPVIVFSFSKRDCEELALK 460 (1108)
T ss_dssp EECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHT-TCCCEEEEESCHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhc-CCCCEEEEeCcHHHHHHHHHH
Confidence 11122233333221 345899999999999999999
Q ss_pred HHHcCCc---------------------------------------eeeccCCCCHHHHHHHHHHhhcCCcceEEeehhh
Q 003881 490 LAQKGFK---------------------------------------AAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530 (789)
Q Consensus 490 L~~~g~~---------------------------------------v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~ 530 (789)
|...++. +..+||+|++.+|..++..|++|.++|||||+++
T Consensus 461 L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vl 540 (1108)
T 3l9o_A 461 MSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETF 540 (1108)
T ss_dssp TCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCC
T ss_pred HHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHH
Confidence 8653222 7899999999999999999999999999999999
Q ss_pred hccCCCCCccEEEEEcCC--------CCHHHHHHHHhhcCCCC-CCCcEEEEEEccc
Q 003881 531 ARGLDIKSIKSVVNFDIA--------RDMDMHVHRIGRTGRAG-DKDGTAYTLVTQK 578 (789)
Q Consensus 531 ~rGlDI~~v~~VI~~d~p--------~s~~~yiQriGR~gR~G-~k~G~~i~lv~~~ 578 (789)
++|||+|++++||+++.| .++..|+||+||+||.| ...|.||+++.+.
T Consensus 541 a~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 541 SIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp CSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred hcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 999999999999977653 36778999999999999 3579999998775
No 21
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=3.8e-44 Score=417.17 Aligned_cols=330 Identities=20% Similarity=0.210 Sum_probs=207.4
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhh
Q 003881 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (789)
Q Consensus 245 ~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~ 324 (789)
..+|+|+|.++++.++.++++|++++||+|||++|++|++..+...+. ..++++|||+||++|+.||++++++++..
T Consensus 5 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 5 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA---GRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp ---CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS---SCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc---cCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 458999999999999999999999999999999999999998866431 23678999999999999999999999988
Q ss_pred cCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhccc-ccCceeEEEEeccchhccCCChHHHH-HHHhh-c-
Q 003881 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL-TMSRVTYLVLDEADRMFDLGFEPQIR-SIVGQ-I- 400 (789)
Q Consensus 325 ~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~-~l~~i~~lVvDEah~m~~~~f~~~i~-~il~~-l- 400 (789)
.++++..++|+.....++..+..+++|+|+||++|.+++....+ .+..+++|||||||++.+++....+. .++.. +
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 161 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN 161 (556)
T ss_dssp GTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHC
T ss_pred cCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhc
Confidence 89999999999987777777777899999999999999988776 78999999999999999877544432 22221 1
Q ss_pred --CCCceEEEEeccCcH-----------HHHHHHHHHh------------------CCCeEEeeccccCcccc-------
Q 003881 401 --RPDRQTLLFSATMPR-----------KVEKLAREIL------------------SDPVRVTVGEVGMANED------- 442 (789)
Q Consensus 401 --~~~~q~ll~SAT~~~-----------~i~~l~~~~l------------------~~p~~i~i~~~~~~~~~------- 442 (789)
.+..|+|+||||++. .+..+...+. ..|....+.........
T Consensus 162 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (556)
T 4a2p_A 162 SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISN 241 (556)
T ss_dssp C---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHH
T ss_pred ccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHH
Confidence 456899999999842 2222222221 11111110000000000
Q ss_pred -----------ee---EEE-------------------------------------------------------------
Q 003881 443 -----------IT---QVV------------------------------------------------------------- 447 (789)
Q Consensus 443 -----------i~---q~~------------------------------------------------------------- 447 (789)
+. ...
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 321 (556)
T 4a2p_A 242 LMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 321 (556)
T ss_dssp HHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 00 000
Q ss_pred -------------------------------------------EecCCCcccHHHHHHhcCCC---CCCCCEEEEecccc
Q 003881 448 -------------------------------------------HVIPSDAEKLPWLLEKLPGM---IDDGDVLVFASKKT 481 (789)
Q Consensus 448 -------------------------------------------~~~~~~~~k~~~L~~~L~~~---~~~~kvLVF~~s~~ 481 (789)
........|...|.++|... ....++||||+++.
T Consensus 322 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~ 401 (556)
T 4a2p_A 322 RIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRA 401 (556)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHH
Confidence 00000134555566666433 34679999999999
Q ss_pred cHHHHHHHHHHc------------CCceeeccCCCCHHHHHHHHHHhhc-CCcceEEeehhhhccCCCCCccEEEEEcCC
Q 003881 482 TVDEIESQLAQK------------GFKAAALHGDKDQASRMEILQKFKS-GVYHVLIATDVAARGLDIKSIKSVVNFDIA 548 (789)
Q Consensus 482 ~a~~l~~~L~~~------------g~~v~~lhg~~~~~eR~~~l~~F~~-G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p 548 (789)
.++.|++.|... |..+..+||+|++.+|..+++.|++ |.++|||||+++++|||+|+|++||+||+|
T Consensus 402 ~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p 481 (556)
T 4a2p_A 402 LVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYS 481 (556)
T ss_dssp HHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETCC
T ss_pred HHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCC
Confidence 999999999875 4555666788999999999999999 999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhcCCCCCCCcEEEEEEccccH
Q 003881 549 RDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (789)
Q Consensus 549 ~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~ 580 (789)
+|+..|+||+|| ||. +.|.+|+|++..+.
T Consensus 482 ~s~~~~~Qr~GR-gR~--~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 482 GNVTKMIQVRGR-GRA--AGSKCILVTSKTEV 510 (556)
T ss_dssp SCHHHHHHC-----------CCEEEEESCHHH
T ss_pred CCHHHHHHhcCC-CCC--CCceEEEEEeCcch
Confidence 999999999999 998 47999999988654
No 22
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=7.3e-44 Score=414.17 Aligned_cols=330 Identities=20% Similarity=0.250 Sum_probs=233.7
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003881 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~ 325 (789)
.+|+|+|.+++++++.++++|++++||+|||++|++|++.++...+. ..++++|||+||++|+.||++++.+++...
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC---GQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS---SCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc---CCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 37999999999999999999999999999999999999998876432 236789999999999999999999999888
Q ss_pred CCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhccc-ccCceeEEEEeccchhccCCChHH-HHHHHhhc---
Q 003881 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL-TMSRVTYLVLDEADRMFDLGFEPQ-IRSIVGQI--- 400 (789)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~-~l~~i~~lVvDEah~m~~~~f~~~-i~~il~~l--- 400 (789)
++++..++|+.....++..+..+++|+|+||++|..++....+ .+..+++|||||||++.+.+.... +..++...
T Consensus 80 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 159 (555)
T 3tbk_A 80 GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGE 159 (555)
T ss_dssp TCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSS
T ss_pred CcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhcc
Confidence 9999999999987777777777899999999999999988766 788999999999999988753222 22333322
Q ss_pred --CCCceEEEEeccCcH-----------HHHHHHHHHhCCCeEEeeccc-----cCcccceeEEEEecC-----------
Q 003881 401 --RPDRQTLLFSATMPR-----------KVEKLAREILSDPVRVTVGEV-----GMANEDITQVVHVIP----------- 451 (789)
Q Consensus 401 --~~~~q~ll~SAT~~~-----------~i~~l~~~~l~~p~~i~i~~~-----~~~~~~i~q~~~~~~----------- 451 (789)
.+..|+|+||||++. .+..+...+ ........... ......... +..+.
T Consensus 160 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~ 237 (555)
T 3tbk_A 160 SRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAAL-DASVIATVRDNVAELEQVVYKPQKI-SRKVASRTSNTFKCII 237 (555)
T ss_dssp CCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHT-TCSEEECCCSCHHHHHTTCCCCCEE-EEECCCCSCCHHHHHH
T ss_pred ccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhc-CCeeeeccccCHHHHHhhcCCCceE-EEEecCcccChHHHHH
Confidence 256799999999853 122222222 11111100000 000000000 00000
Q ss_pred --------------------------------------------------------------------------------
Q 003881 452 -------------------------------------------------------------------------------- 451 (789)
Q Consensus 452 -------------------------------------------------------------------------------- 451 (789)
T Consensus 238 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 317 (555)
T 3tbk_A 238 SQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIIS 317 (555)
T ss_dssp HHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence
Q ss_pred --------------------------------------------------CCcccHHHHHHhcCCC---CCCCCEEEEec
Q 003881 452 --------------------------------------------------SDAEKLPWLLEKLPGM---IDDGDVLVFAS 478 (789)
Q Consensus 452 --------------------------------------------------~~~~k~~~L~~~L~~~---~~~~kvLVF~~ 478 (789)
....|...|.++|... ....++||||+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~ 397 (555)
T 3tbk_A 318 EDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVK 397 (555)
T ss_dssp HHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECS
T ss_pred hhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeC
Confidence 0134555555555443 24579999999
Q ss_pred ccccHHHHHHHHHHcC----C--------ceeeccCCCCHHHHHHHHHHhhc-CCcceEEeehhhhccCCCCCccEEEEE
Q 003881 479 KKTTVDEIESQLAQKG----F--------KAAALHGDKDQASRMEILQKFKS-GVYHVLIATDVAARGLDIKSIKSVVNF 545 (789)
Q Consensus 479 s~~~a~~l~~~L~~~g----~--------~v~~lhg~~~~~eR~~~l~~F~~-G~~~VLVaT~v~~rGlDI~~v~~VI~~ 545 (789)
++..++.|++.|...+ + ....+||+|++.+|..+++.|++ |.++|||||+++++|||+|+|++||+|
T Consensus 398 ~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~ 477 (555)
T 3tbk_A 398 TRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILY 477 (555)
T ss_dssp SHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEE
T ss_pred cHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEe
Confidence 9999999999999864 3 44455569999999999999999 999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHH
Q 003881 546 DIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFA 583 (789)
Q Consensus 546 d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~ 583 (789)
|+|+|+..|+||+|| ||. +.|.+|+|+++.+....
T Consensus 478 d~p~s~~~~~Qr~GR-gR~--~~g~~~~l~~~~~~~~~ 512 (555)
T 3tbk_A 478 EYVGNVIKMIQTRGR-GRA--RDSKCFLLTSSADVIEK 512 (555)
T ss_dssp SCCSSCCCEECSSCC-CTT--TSCEEEEEESCHHHHHH
T ss_pred CCCCCHHHHHHhcCc-CcC--CCceEEEEEcCCCHHHH
Confidence 999999999999999 897 57999999998765444
No 23
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=7.2e-43 Score=419.45 Aligned_cols=341 Identities=24% Similarity=0.356 Sum_probs=270.0
Q ss_pred CCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEE
Q 003881 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPI-ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (789)
Q Consensus 224 i~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~-il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vL 302 (789)
..+|++++|++.+.+.+.+.||..|+|+|.++++. +.+++++|+++|||||||++|.++++.++.. ++.++|
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-------~~~~il 79 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK-------NGGKAI 79 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH-------SCSEEE
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH-------CCCeEE
Confidence 35799999999999999999999999999999999 7889999999999999999999999988753 257899
Q ss_pred EEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccc
Q 003881 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD 382 (789)
Q Consensus 303 Il~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah 382 (789)
|++|+++||.|+++.++++ ...++++..++|+....... ...++|+|+||++|..++......+.++++|||||||
T Consensus 80 ~i~P~r~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H 155 (715)
T 2va8_A 80 YVTPLRALTNEKYLTFKDW-ELIGFKVAMTSGDYDTDDAW---LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELH 155 (715)
T ss_dssp EECSCHHHHHHHHHHHGGG-GGGTCCEEECCSCSSSCCGG---GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGG
T ss_pred EEeCcHHHHHHHHHHHHHh-hcCCCEEEEEeCCCCCchhh---cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechh
Confidence 9999999999999999644 44589999999987654431 2369999999999999988876668999999999999
Q ss_pred hhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCc-------ccceeEEEEecC----
Q 003881 383 RMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMA-------NEDITQVVHVIP---- 451 (789)
Q Consensus 383 ~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~-------~~~i~q~~~~~~---- 451 (789)
++.++.+...+..++..++ +.|+|+||||+++ ...++.++...++.......... .......+.+..
T Consensus 156 ~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~~l~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 233 (715)
T 2va8_A 156 YLNDPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAKWLGAEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTK 233 (715)
T ss_dssp GGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHHHHTCEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEE
T ss_pred hcCCcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHHHhCCCccCCCCCCCCceEEEEecCCcccceeeecCcchhh
Confidence 9998889989998888887 8999999999986 35666655422111100000000 000000111111
Q ss_pred ---CCcccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcC----------------------------------
Q 003881 452 ---SDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKG---------------------------------- 494 (789)
Q Consensus 452 ---~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g---------------------------------- 494 (789)
....+...+.+.+. ..+++||||+++..++.++..|....
T Consensus 234 ~~~~~~~~~~~~~~~~~---~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 310 (715)
T 2va8_A 234 KVHGDDAIIAYTLDSLS---KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSL 310 (715)
T ss_dssp EEESSSHHHHHHHHHHT---TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHh---cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHH
Confidence 01233444444443 46899999999999999999998642
Q ss_pred --CceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEE----Ec-------CCCCHHHHHHHHhhc
Q 003881 495 --FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN----FD-------IARDMDMHVHRIGRT 561 (789)
Q Consensus 495 --~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~----~d-------~p~s~~~yiQriGR~ 561 (789)
..+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+||+
T Consensus 311 ~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRa 390 (715)
T 2va8_A 311 ISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRA 390 (715)
T ss_dssp HTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTB
T ss_pred HhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhc
Confidence 24899999999999999999999999999999999999999999999999 99 899999999999999
Q ss_pred CCCC-CCCcEEEEEEccccH
Q 003881 562 GRAG-DKDGTAYTLVTQKEA 580 (789)
Q Consensus 562 gR~G-~k~G~~i~lv~~~d~ 580 (789)
||.| ...|.||++++..+.
T Consensus 391 GR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 391 GRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp CCTTTCSCEEEEEECSCGGG
T ss_pred CCCCCCCCceEEEEeCCchH
Confidence 9998 347999999987663
No 24
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=6.6e-44 Score=427.27 Aligned_cols=340 Identities=21% Similarity=0.253 Sum_probs=225.8
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHH
Q 003881 238 HAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLE 317 (789)
Q Consensus 238 ~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~ 317 (789)
..+...||.+|+|+|.+++++++.++|+|++++||+|||++|++|++.++...+. ..++++|||+||++|+.||.++
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~---~~~~~~lvl~Pt~~L~~Q~~~~ 80 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ---GQKGKVVFFANQIPVYEQNKSV 80 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT---TCCCCEEEECSSHHHHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc---CCCCeEEEEECCHHHHHHHHHH
Confidence 4566778999999999999999999999999999999999999999998865431 2236799999999999999999
Q ss_pred HHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhccc-ccCceeEEEEeccchhccCCChHHHH-H
Q 003881 318 TKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL-TMSRVTYLVLDEADRMFDLGFEPQIR-S 395 (789)
Q Consensus 318 ~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~-~l~~i~~lVvDEah~m~~~~f~~~i~-~ 395 (789)
+++++...++++..++|+.....+...+..+++|+|+||++|.+.+....+ .+..+++|||||||++.+......+. .
T Consensus 81 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~ 160 (696)
T 2ykg_A 81 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFN 160 (696)
T ss_dssp HHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHH
T ss_pred HHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHH
Confidence 999998778999999999877666777777899999999999999987766 78899999999999988654222222 2
Q ss_pred HHhh-----cCCCceEEEEeccCc-------H-HHHHHHHH---------------------HhCCCeEEeeccccCc--
Q 003881 396 IVGQ-----IRPDRQTLLFSATMP-------R-KVEKLARE---------------------ILSDPVRVTVGEVGMA-- 439 (789)
Q Consensus 396 il~~-----l~~~~q~ll~SAT~~-------~-~i~~l~~~---------------------~l~~p~~i~i~~~~~~-- 439 (789)
.+.. ..+..++|+||||+. . .+..+... +...|...........
T Consensus 161 ~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~ 240 (696)
T 2ykg_A 161 YLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD 240 (696)
T ss_dssp HHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCC
T ss_pred HHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCC
Confidence 2222 246789999999986 1 12222111 1111211110000000
Q ss_pred --------------------------------------------------------------------------------
Q 003881 440 -------------------------------------------------------------------------------- 439 (789)
Q Consensus 440 -------------------------------------------------------------------------------- 439 (789)
T Consensus 241 ~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 320 (696)
T 2ykg_A 241 KFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYN 320 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHh
Confidence
Q ss_pred -----------------------------ccceeEEEEe---------------cCCCcccHHHHHHhcCCC---CCCCC
Q 003881 440 -----------------------------NEDITQVVHV---------------IPSDAEKLPWLLEKLPGM---IDDGD 472 (789)
Q Consensus 440 -----------------------------~~~i~q~~~~---------------~~~~~~k~~~L~~~L~~~---~~~~k 472 (789)
...+.+.+.. ......|...|.++|... ...++
T Consensus 321 ~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~ 400 (696)
T 2ykg_A 321 DALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 400 (696)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCC
T ss_pred HHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCc
Confidence 0000000000 001234666666666543 24569
Q ss_pred EEEEecccccHHHHHHHHHHcC----Cceeec--------cCCCCHHHHHHHHHHhhc-CCcceEEeehhhhccCCCCCc
Q 003881 473 VLVFASKKTTVDEIESQLAQKG----FKAAAL--------HGDKDQASRMEILQKFKS-GVYHVLIATDVAARGLDIKSI 539 (789)
Q Consensus 473 vLVF~~s~~~a~~l~~~L~~~g----~~v~~l--------hg~~~~~eR~~~l~~F~~-G~~~VLVaT~v~~rGlDI~~v 539 (789)
+||||+++..++.|++.|...+ +.+..+ |++|++.+|..+++.|++ |+++|||||+++++|||||+|
T Consensus 401 ~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v 480 (696)
T 2ykg_A 401 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQC 480 (696)
T ss_dssp EEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCC
T ss_pred EEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccC
Confidence 9999999999999999999987 889988 459999999999999998 999999999999999999999
Q ss_pred cEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHH
Q 003881 540 KSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFA 583 (789)
Q Consensus 540 ~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~ 583 (789)
++||+||+|+++..|+||+|| ||. +.|.|++|++..+....
T Consensus 481 ~~VI~~d~p~s~~~~~Qr~GR-GR~--~~g~~~~l~~~~~~~~~ 521 (696)
T 2ykg_A 481 NLVILYEYVGNVIKMIQTRGR-GRA--RGSKCFLLTSNAGVIEK 521 (696)
T ss_dssp SEEEEESCC--CCCC------------CCCEEEEEESCHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHhhcc-CcC--CCceEEEEecCCCHHHH
Confidence 999999999999999999999 997 47999999988766433
No 25
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=4.1e-43 Score=421.73 Aligned_cols=334 Identities=20% Similarity=0.288 Sum_probs=273.9
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEE
Q 003881 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPI-ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (789)
Q Consensus 226 sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~-il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl 304 (789)
+|++++|++.+.+.+.+.||..|+|+|.++++. ++.++++|+++|||||||++|.+|++.++... +.++||+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~~l~i 74 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-------GGKAVYI 74 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-------CSEEEEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------CCEEEEE
Confidence 588999999999999999999999999999998 88999999999999999999999999887532 5789999
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchh
Q 003881 305 APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM 384 (789)
Q Consensus 305 ~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m 384 (789)
+|+++||.|+++.++++.. .++++..++|+...... ....++|+|+||++|..++......+.++++|||||||++
T Consensus 75 ~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l 150 (720)
T 2zj8_A 75 VPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLI 150 (720)
T ss_dssp CSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGG
T ss_pred cCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCccc
Confidence 9999999999999975543 58999999997665432 1236899999999999988876666899999999999999
Q ss_pred ccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEE------EecCC----Cc
Q 003881 385 FDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVV------HVIPS----DA 454 (789)
Q Consensus 385 ~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~------~~~~~----~~ 454 (789)
.++.+...+..++..++.+.|+|+||||+++ ...++.++...+ +... .....+...+ ..... ..
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~~l~~~~--~~~~---~rp~~l~~~~~~~~~~~~~~~~~~~~~ 224 (720)
T 2zj8_A 151 GSRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAEWLNAEL--IVSD---WRPVKLRRGVFYQGFVTWEDGSIDRFS 224 (720)
T ss_dssp GCTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHHHTTEEE--EECC---CCSSEEEEEEEETTEEEETTSCEEECS
T ss_pred CCCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHHHhCCcc--cCCC---CCCCcceEEEEeCCeeeccccchhhhh
Confidence 9989999999999998888999999999986 355666543211 1110 0111111111 11110 23
Q ss_pred ccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHc---------------------------------CCceeecc
Q 003881 455 EKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK---------------------------------GFKAAALH 501 (789)
Q Consensus 455 ~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~---------------------------------g~~v~~lh 501 (789)
.+...+.+.+. ..+++||||+++..++.++..|.+. ...+..+|
T Consensus 225 ~~~~~~~~~~~---~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h 301 (720)
T 2zj8_A 225 SWEELVYDAIR---KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHH 301 (720)
T ss_dssp STTHHHHHHHH---TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEEC
T ss_pred HHHHHHHHHHh---CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeec
Confidence 34455555443 4579999999999999999998753 12489999
Q ss_pred CCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEE----Ec----CCCCHHHHHHHHhhcCCCC-CCCcEEE
Q 003881 502 GDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN----FD----IARDMDMHVHRIGRTGRAG-DKDGTAY 572 (789)
Q Consensus 502 g~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~----~d----~p~s~~~yiQriGR~gR~G-~k~G~~i 572 (789)
|+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.++.+|+||+||+||.| ...|.||
T Consensus 302 ~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~ 381 (720)
T 2zj8_A 302 AGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGI 381 (720)
T ss_dssp TTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEE
Confidence 9999999999999999999999999999999999999999998 77 6899999999999999998 3479999
Q ss_pred EEEcccc
Q 003881 573 TLVTQKE 579 (789)
Q Consensus 573 ~lv~~~d 579 (789)
+|++..+
T Consensus 382 ~l~~~~~ 388 (720)
T 2zj8_A 382 IVSTSDD 388 (720)
T ss_dssp EECSSSC
T ss_pred EEecCcc
Confidence 9998877
No 26
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.6e-42 Score=420.79 Aligned_cols=332 Identities=20% Similarity=0.209 Sum_probs=214.1
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHh
Q 003881 243 QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (789)
Q Consensus 243 ~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~ 322 (789)
.++..|+|+|.++++.++.++++|++++||+|||++|++|++.++...+. ..++++|||+||++|+.||++++++++
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~---~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~ 320 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA---GRKAKVVFLATKVPVYEQQKNVFKHHF 320 (797)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS---SCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc---cCCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 36789999999999999999999999999999999999999998866431 236789999999999999999999999
Q ss_pred hhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhccc-ccCceeEEEEeccchhccCCChHHHH-HHHhhc
Q 003881 323 KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL-TMSRVTYLVLDEADRMFDLGFEPQIR-SIVGQI 400 (789)
Q Consensus 323 ~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~-~l~~i~~lVvDEah~m~~~~f~~~i~-~il~~l 400 (789)
...++++..++|+.....+...+..+++|||+||++|.+.+....+ .+..+++|||||||++.+.+....+. .++...
T Consensus 321 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~ 400 (797)
T 4a2q_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 400 (797)
T ss_dssp GGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHH
T ss_pred ccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHh
Confidence 8889999999999988777777888899999999999999987766 78899999999999998765333332 222221
Q ss_pred ----CCCceEEEEeccCcH-----------HHHHHHHHH------------------hCCCeEEeeccccCccc------
Q 003881 401 ----RPDRQTLLFSATMPR-----------KVEKLAREI------------------LSDPVRVTVGEVGMANE------ 441 (789)
Q Consensus 401 ----~~~~q~ll~SAT~~~-----------~i~~l~~~~------------------l~~p~~i~i~~~~~~~~------ 441 (789)
.+.+|+|+||||+.. .+..+...+ +..|....+........
T Consensus 401 ~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (797)
T 4a2q_A 401 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 480 (797)
T ss_dssp HTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHH
T ss_pred hccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHH
Confidence 566899999999852 333332222 11121111000000000
Q ss_pred ------------cee------EEE-E------------------------------------------------------
Q 003881 442 ------------DIT------QVV-H------------------------------------------------------ 448 (789)
Q Consensus 442 ------------~i~------q~~-~------------------------------------------------------ 448 (789)
.+. ... .
T Consensus 481 ~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 560 (797)
T 4a2q_A 481 SNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 560 (797)
T ss_dssp HHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 000 000 0
Q ss_pred ----------------------------------------------ecCCCcccHHHHHHhcCCC---CCCCCEEEEecc
Q 003881 449 ----------------------------------------------VIPSDAEKLPWLLEKLPGM---IDDGDVLVFASK 479 (789)
Q Consensus 449 ----------------------------------------------~~~~~~~k~~~L~~~L~~~---~~~~kvLVF~~s 479 (789)
.......|...|..+|... ....++||||++
T Consensus 561 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~ 640 (797)
T 4a2q_A 561 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 640 (797)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESS
T ss_pred cccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECc
Confidence 0000133555555555432 245799999999
Q ss_pred cccHHHHHHHHHHc------------CCceeeccCCCCHHHHHHHHHHhhc-CCcceEEeehhhhccCCCCCccEEEEEc
Q 003881 480 KTTVDEIESQLAQK------------GFKAAALHGDKDQASRMEILQKFKS-GVYHVLIATDVAARGLDIKSIKSVVNFD 546 (789)
Q Consensus 480 ~~~a~~l~~~L~~~------------g~~v~~lhg~~~~~eR~~~l~~F~~-G~~~VLVaT~v~~rGlDI~~v~~VI~~d 546 (789)
+..++.|+.+|... |..+..+||+|++.+|..+++.|++ |.++|||||+++++|||||+|++||+||
T Consensus 641 ~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd 720 (797)
T 4a2q_A 641 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYE 720 (797)
T ss_dssp HHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEES
T ss_pred HHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeC
Confidence 99999999999873 5566778899999999999999999 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccH
Q 003881 547 IARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (789)
Q Consensus 547 ~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~ 580 (789)
+|+|+..|+||+|| ||. +.|.||+|++..+.
T Consensus 721 ~p~s~~~~iQr~GR-GR~--~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 721 YSGNVTKMIQVRGR-GRA--AGSKCILVTSKTEV 751 (797)
T ss_dssp CCSCHHHHHTC----------CCCEEEEECCHHH
T ss_pred CCCCHHHHHHhcCC-CCC--CCceEEEEEeCCcH
Confidence 99999999999999 998 47999999988654
No 27
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=3.8e-43 Score=420.86 Aligned_cols=334 Identities=22% Similarity=0.325 Sum_probs=267.4
Q ss_pred CcccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEE
Q 003881 226 TFEDCG--FSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (789)
Q Consensus 226 sf~~~~--l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLI 303 (789)
+|++++ |++.+.+.+.+.||..|+|+|.++++.+++++++|+++|||||||++|.++++.++.. +.++||
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~l~ 73 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK--------GGKSLY 73 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT--------TCCEEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh--------CCcEEE
Confidence 577787 9999999999999999999999999999999999999999999999999999988743 567999
Q ss_pred EcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccch
Q 003881 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (789)
Q Consensus 304 l~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~ 383 (789)
++|+++||.|+++.++++. ..++++..++|+...... ....++|+|+||++|..++......+.++++|||||||+
T Consensus 74 i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~ 149 (702)
T 2p6r_A 74 VVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHL 149 (702)
T ss_dssp EESSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGG
T ss_pred EeCcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeee
Confidence 9999999999999996543 458899999998765432 123689999999999999988766689999999999999
Q ss_pred hccCCChHHHHHHHhhc---CCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEE------EecCCC-
Q 003881 384 MFDLGFEPQIRSIVGQI---RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVV------HVIPSD- 453 (789)
Q Consensus 384 m~~~~f~~~i~~il~~l---~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~------~~~~~~- 453 (789)
+.++++...+..++..+ .++.|+|+||||+++ ...++.++.. +. +... .....+...+ ......
T Consensus 150 l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~l~~-~~-~~~~---~r~~~l~~~~~~~~~~~~~~~~~ 223 (702)
T 2p6r_A 150 LDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEWLDA-DY-YVSD---WRPVPLVEGVLCEGTLELFDGAF 223 (702)
T ss_dssp GGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHHTTC-EE-EECC---CCSSCEEEEEECSSEEEEEETTE
T ss_pred cCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHHhCC-Cc-ccCC---CCCccceEEEeeCCeeeccCcch
Confidence 99988888888777666 578999999999986 4666665532 21 1111 0111111111 111100
Q ss_pred -----cccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHc------------------------------CCcee
Q 003881 454 -----AEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK------------------------------GFKAA 498 (789)
Q Consensus 454 -----~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~------------------------------g~~v~ 498 (789)
..+...+.+.+. ..+++||||+++..++.++..|... +..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~---~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~ 300 (702)
T 2p6r_A 224 STSRRVKFEELVEECVA---ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAA 300 (702)
T ss_dssp EEEEECCHHHHHHHHHH---TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCC
T ss_pred hhhhhhhHHHHHHHHHh---cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeE
Confidence 013444444443 4679999999999999999998753 23588
Q ss_pred eccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEE----Ec---CCCCHHHHHHHHhhcCCCC-CCCcE
Q 003881 499 ALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN----FD---IARDMDMHVHRIGRTGRAG-DKDGT 570 (789)
Q Consensus 499 ~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~----~d---~p~s~~~yiQriGR~gR~G-~k~G~ 570 (789)
.+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.++.+|+||+||+||.| ...|.
T Consensus 301 ~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~ 380 (702)
T 2p6r_A 301 FHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGE 380 (702)
T ss_dssp EECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEE
T ss_pred EecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCce
Confidence 8999999999999999999999999999999999999999999998 77 7899999999999999998 34799
Q ss_pred EEEEEccccH
Q 003881 571 AYTLVTQKEA 580 (789)
Q Consensus 571 ~i~lv~~~d~ 580 (789)
||++++..+.
T Consensus 381 ~~~l~~~~~~ 390 (702)
T 2p6r_A 381 AIIIVGKRDR 390 (702)
T ss_dssp EEEECCGGGH
T ss_pred EEEEecCccH
Confidence 9999988763
No 28
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=3.4e-42 Score=426.33 Aligned_cols=319 Identities=23% Similarity=0.304 Sum_probs=265.6
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHh
Q 003881 243 QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (789)
Q Consensus 243 ~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~ 322 (789)
.+| +|||+|.++++.+++++|+|++|+||+|||++|+++++..+ ..++++|||+||++||.|+++.+++++
T Consensus 75 ~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~--------~~~~~~Lil~PtreLa~Q~~~~l~~l~ 145 (1104)
T 4ddu_A 75 FGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--------RKGKKSALVFPTVTLVKQTLERLQKLA 145 (1104)
T ss_dssp SSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH--------TTTCCEEEEESSHHHHHHHHHHHHTTS
T ss_pred cCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH--------hcCCeEEEEechHHHHHHHHHHHHHhh
Confidence 467 69999999999999999999999999999998888877765 347889999999999999999999977
Q ss_pred hhcCCeEEEEECCCCh---HHHHHHHhcC-CcEEEeChHHHHHHHhhcccccCceeEEEEeccch----------hcc-C
Q 003881 323 KSHGIRVSAVYGGMSK---LDQFKELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR----------MFD-L 387 (789)
Q Consensus 323 ~~~~i~v~~~~gg~~~---~~~~~~l~~~-~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~----------m~~-~ 387 (789)
..++++.+++|+.+. ..++..+..+ ++|||+||++|.+++.. +.+.++++|||||||+ |++ +
T Consensus 146 -~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~ 222 (1104)
T 4ddu_A 146 -DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMV 222 (1104)
T ss_dssp -CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTS
T ss_pred -CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhc
Confidence 668999999999987 6677778776 99999999999888764 6678999999999965 555 8
Q ss_pred CChHH-HHHHHhhcC-----------CCceEEEEecc-CcHHHH-HHHHHHhCCCeEEeeccccCcccceeEEEEecCCC
Q 003881 388 GFEPQ-IRSIVGQIR-----------PDRQTLLFSAT-MPRKVE-KLAREILSDPVRVTVGEVGMANEDITQVVHVIPSD 453 (789)
Q Consensus 388 ~f~~~-i~~il~~l~-----------~~~q~ll~SAT-~~~~i~-~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~ 453 (789)
+|... +..++..++ ..+|+++|||| .|..+. .+...++. +.+.........+.+.+..+
T Consensus 223 gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~--- 295 (1104)
T 4ddu_A 223 GIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS--- 295 (1104)
T ss_dssp SCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESC---
T ss_pred CCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEec---
Confidence 99988 889998887 88999999999 565544 23334333 33444445566677776555
Q ss_pred cccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCcee-eccCCCCHHHHHHHHHHhhcCCcceEEe----eh
Q 003881 454 AEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAA-ALHGDKDQASRMEILQKFKSGVYHVLIA----TD 528 (789)
Q Consensus 454 ~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~-~lhg~~~~~eR~~~l~~F~~G~~~VLVa----T~ 528 (789)
.+...|..+|.. ..+++||||+++..++.|+..|...++.+. .+||. |.+ ++.|++|+++|||| |+
T Consensus 296 -~k~~~L~~ll~~--~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~Td 366 (1104)
T 4ddu_A 296 -RSKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYG 366 (1104)
T ss_dssp -CCHHHHHHHHHH--HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHH
T ss_pred -CHHHHHHHHHHh--cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCC
Confidence 455666666655 247999999999999999999999999998 99992 555 99999999999999 99
Q ss_pred hhhccCCCCC-ccEEEEEcCCC----------------------------------------------------------
Q 003881 529 VAARGLDIKS-IKSVVNFDIAR---------------------------------------------------------- 549 (789)
Q Consensus 529 v~~rGlDI~~-v~~VI~~d~p~---------------------------------------------------------- 549 (789)
++++|||||+ |++|||||+|.
T Consensus 367 vlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~ 446 (1104)
T 4ddu_A 367 KLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFR 446 (1104)
T ss_dssp HHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCC
T ss_pred eeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccc
Confidence 9999999999 99999999998
Q ss_pred --------------CHHHHHHHHhhcCCCCC---CCcEEEEEEccccHHHHHHHHHHHH
Q 003881 550 --------------DMDMHVHRIGRTGRAGD---KDGTAYTLVTQKEARFAGELVNSLI 591 (789)
Q Consensus 550 --------------s~~~yiQriGR~gR~G~---k~G~~i~lv~~~d~~~~~~lv~~l~ 591 (789)
++.+|+||+|||||.|. ..|.+++++ .|...+..|.+.|.
T Consensus 447 ~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~--~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 447 GVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 503 (1104)
T ss_dssp SSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred eEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE--ecHHHHHHHHHHHh
Confidence 78899999999999652 135555555 78888888888876
No 29
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.1e-41 Score=387.32 Aligned_cols=323 Identities=21% Similarity=0.242 Sum_probs=253.2
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003881 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (789)
Q Consensus 247 ~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~ 326 (789)
.|+|+|.+++++++.+ ++|++++||+|||++++++++.++. ..+.++|||||+++|+.||.+++.+++....
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~-------~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT-------KYGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH-------HSCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh-------cCCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 7999999999999999 9999999999999999999988764 2356799999999999999999999974334
Q ss_pred CeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcCCCceE
Q 003881 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 406 (789)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ 406 (789)
.++..++|+...... ..+...++|+|+||+.|...+....+.+..+++|||||||++.+......+...+....+..++
T Consensus 81 ~~v~~~~g~~~~~~~-~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~ 159 (494)
T 1wp9_A 81 EKIVALTGEKSPEER-SKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLV 159 (494)
T ss_dssp GGEEEECSCSCHHHH-HHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCE
T ss_pred hheEEeeCCcchhhh-hhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeE
Confidence 588888888776543 3344568999999999999988877788999999999999998765555666666666778899
Q ss_pred EEEeccCcHH---HHHHHHHHhCCCeEEeeccccC-----cccceeEEEEe-----------------------------
Q 003881 407 LLFSATMPRK---VEKLAREILSDPVRVTVGEVGM-----ANEDITQVVHV----------------------------- 449 (789)
Q Consensus 407 ll~SAT~~~~---i~~l~~~~l~~p~~i~i~~~~~-----~~~~i~q~~~~----------------------------- 449 (789)
++||||+.+. +..++..+......+....... ....+......
T Consensus 160 l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (494)
T 1wp9_A 160 IGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLL 239 (494)
T ss_dssp EEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred EEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999743 4444444322211111000000 00000000000
Q ss_pred --------------------------------------------------------------------------------
Q 003881 450 -------------------------------------------------------------------------------- 449 (789)
Q Consensus 450 -------------------------------------------------------------------------------- 449 (789)
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 319 (494)
T 1wp9_A 240 ESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEI 319 (494)
T ss_dssp SCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred cccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhh
Confidence
Q ss_pred ------------------cCCCcccHHHHHHhcCCC---CCCCCEEEEecccccHHHHHHHHHHcCCceeeccC------
Q 003881 450 ------------------IPSDAEKLPWLLEKLPGM---IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHG------ 502 (789)
Q Consensus 450 ------------------~~~~~~k~~~L~~~L~~~---~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg------ 502 (789)
......|...|.++|... ....++||||+++..++.+++.|...++.+..+||
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~ 399 (494)
T 1wp9_A 320 FSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKEN 399 (494)
T ss_dssp HTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC--
T ss_pred hhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccc
Confidence 002234556666666553 25679999999999999999999999999999999
Q ss_pred --CCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccH
Q 003881 503 --DKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (789)
Q Consensus 503 --~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~ 580 (789)
+++..+|..+++.|++|.++|||||+++++|||+|++++||+||+||++..|+||+||+||.| . |.+|.|+++.+.
T Consensus 400 ~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g-~-g~~~~l~~~~t~ 477 (494)
T 1wp9_A 400 DRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHM-P-GRVIILMAKGTR 477 (494)
T ss_dssp -----CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCC-C-SEEEEEEETTSH
T ss_pred cccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCC-C-ceEEEEEecCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999 3 999999998754
No 30
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=7.7e-43 Score=407.63 Aligned_cols=365 Identities=19% Similarity=0.242 Sum_probs=251.4
Q ss_pred CChhhcCCCHHHHHHHHHHcCceeccCCCCCCCCCcccCCCCHHHHHHHHH-----cCCCCCcHHHHHHHHHHHcCCCEE
Q 003881 192 DSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISK-----QGYEKPTSIQCQALPIILSGRDII 266 (789)
Q Consensus 192 ~~~~i~~~s~~~~~~~r~~~~i~v~~~~~P~pi~sf~~~~l~~~l~~~l~~-----~g~~~ptpiQ~~~i~~il~grdvl 266 (789)
-.+.+..|+.+++.....++...+.... +++++ | ++....+.. .|. .|+|+|..+++.+++|+ |
T Consensus 23 le~~~~~lsd~eL~~kt~~fk~rl~~g~------~ld~~-l-peafA~vrea~~R~lg~-~p~~VQ~~~i~~ll~G~--I 91 (853)
T 2fsf_A 23 MEPEMEKLSDEELKGKTAEFRARLEKGE------VLENL-I-PEAFAVVREASKRVFGM-RHFDVQLLGGMVLNERC--I 91 (853)
T ss_dssp THHHHHHSCHHHHHHHHHHHHHHHHTTC------CHHHH-H-HHHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHSSE--E
T ss_pred hHHHHHhCCHHHHHHHHHHHHHHHHcCC------Chhhh-h-HHHHHHHHHHHHHHcCC-CCChHHHhhcccccCCe--e
Confidence 3456788888888776665544332211 12221 1 222222222 354 89999999999999998 9
Q ss_pred EEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHh
Q 003881 267 GIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK 346 (789)
Q Consensus 267 l~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~ 346 (789)
+.++||+|||++|++|++.+.+ .++.++||+||++||.|+++++..++..+++++.+++||.+.. .+.+.
T Consensus 92 aem~TGsGKTlaf~LP~l~~~l--------~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~--~r~~~ 161 (853)
T 2fsf_A 92 AEMRTGEGKTLTATLPAYLNAL--------TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAP--AKREA 161 (853)
T ss_dssp EECCTTSCHHHHHHHHHHHHHT--------TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHH--HHHHH
T ss_pred eeecCCchHHHHHHHHHHHHHH--------cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHH--HHHHh
Confidence 9999999999999999987653 2567999999999999999999999999999999999998764 34455
Q ss_pred cCCcEEEeChHHH-HHHHhhc------ccccCceeEEEEeccchhc-cCC---------------ChHHHHHHHhhcCC-
Q 003881 347 AGCEIVIATPGRL-IDMLKMK------ALTMSRVTYLVLDEADRMF-DLG---------------FEPQIRSIVGQIRP- 402 (789)
Q Consensus 347 ~~~dIiV~Tp~~L-~~~l~~~------~~~l~~i~~lVvDEah~m~-~~~---------------f~~~i~~il~~l~~- 402 (789)
.+++|+|+||++| ++++..+ .+.+..+.++||||||+|+ +.+ |...+..++..++.
T Consensus 162 ~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~ 241 (853)
T 2fsf_A 162 YAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQ 241 (853)
T ss_dssp HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC---------------------
T ss_pred cCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchhh
Confidence 5799999999999 7888654 3567899999999999998 543 56778888888864
Q ss_pred -------------------CceEE------------------------EEeccCcHHHHHH-----HHHHhC--------
Q 003881 403 -------------------DRQTL------------------------LFSATMPRKVEKL-----AREILS-------- 426 (789)
Q Consensus 403 -------------------~~q~l------------------------l~SAT~~~~i~~l-----~~~~l~-------- 426 (789)
.+|++ +||||.+.-+..+ +..++.
T Consensus 242 ~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~ 321 (853)
T 2fsf_A 242 EKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVK 321 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHHHHHHHHhhcCccceee
Confidence 56654 8999976422211 111111
Q ss_pred CC-----------------------------eEEeeccccCcccceeE--------------------------------
Q 003881 427 DP-----------------------------VRVTVGEVGMANEDITQ-------------------------------- 445 (789)
Q Consensus 427 ~p-----------------------------~~i~i~~~~~~~~~i~q-------------------------------- 445 (789)
++ ..+.+.....+...|.+
T Consensus 322 d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~v 401 (853)
T 2fsf_A 322 DGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDT 401 (853)
T ss_dssp -----------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCEE
T ss_pred cCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCcE
Confidence 00 11111111111111111
Q ss_pred --------------EEEecCCCcccHHHHHHhcCCCC-CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHH
Q 003881 446 --------------VVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRM 510 (789)
Q Consensus 446 --------------~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~ 510 (789)
...+......|+..|+..+.... ...++||||+++..++.|+..|.+.|+++.+|||++.+.++.
T Consensus 402 v~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~ 481 (853)
T 2fsf_A 402 VVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAA 481 (853)
T ss_dssp EECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHH
T ss_pred EEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHH
Confidence 00122244567888887775432 345899999999999999999999999999999999998988
Q ss_pred HHHHHhhcCCcceEEeehhhhccCCCCCc-------------------------------------cEEEEEcCCCCHHH
Q 003881 511 EILQKFKSGVYHVLIATDVAARGLDIKSI-------------------------------------KSVVNFDIARDMDM 553 (789)
Q Consensus 511 ~~l~~F~~G~~~VLVaT~v~~rGlDI~~v-------------------------------------~~VI~~d~p~s~~~ 553 (789)
.+...|+.| .|||||++++||+||+.. .+||+|+.|.+...
T Consensus 482 iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~ri 559 (853)
T 2fsf_A 482 IVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRI 559 (853)
T ss_dssp HHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHH
T ss_pred HHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHH
Confidence 888899988 699999999999999973 69999999999999
Q ss_pred HHHHHhhcCCCCCCCcEEEEEEccccH
Q 003881 554 HVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (789)
Q Consensus 554 yiQriGR~gR~G~k~G~~i~lv~~~d~ 580 (789)
|+||+||+||.| .+|.+++|++..|.
T Consensus 560 y~qr~GRTGRqG-d~G~s~~fls~eD~ 585 (853)
T 2fsf_A 560 DNQLRGRSGRQG-DAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHTTSSGGG-CCEEEEEEEETTSG
T ss_pred HHhhccccccCC-CCeeEEEEecccHH
Confidence 999999999999 68999999998764
No 31
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1e-42 Score=431.11 Aligned_cols=324 Identities=20% Similarity=0.288 Sum_probs=265.5
Q ss_pred HHHH-HcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHH
Q 003881 238 HAIS-KQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYL 316 (789)
Q Consensus 238 ~~l~-~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~ 316 (789)
+.+. ..||. | |+|.++|+.++.++|+|++++||||||+ |++|++.++.. .++++|||+||++||.|+++
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~-------~~~~~lil~PtreLa~Q~~~ 117 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL-------KGKRCYVIFPTSLLVIQAAE 117 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT-------TSCCEEEEESCHHHHHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh-------cCCeEEEEeccHHHHHHHHH
Confidence 3444 36999 9 9999999999999999999999999998 89999988754 36789999999999999999
Q ss_pred HHHHHhhhcCC----eEEEEECCCChHHH---HHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCC
Q 003881 317 ETKKFAKSHGI----RVSAVYGGMSKLDQ---FKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGF 389 (789)
Q Consensus 317 ~~~~~~~~~~i----~v~~~~gg~~~~~~---~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f 389 (789)
.+++++...++ ++.+++|+.....+ ...+.. ++|+|+||++|.+++.. |..+++|||||||+|++ |
T Consensus 118 ~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~ 190 (1054)
T 1gku_B 118 TIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--A 190 (1054)
T ss_dssp HHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--S
T ss_pred HHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--c
Confidence 99999988888 89999999987663 344455 99999999999998764 67899999999999998 5
Q ss_pred hHHHHHHHhhc-----------CCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHH
Q 003881 390 EPQIRSIVGQI-----------RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLP 458 (789)
Q Consensus 390 ~~~i~~il~~l-----------~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~ 458 (789)
...+..++..+ +..+|+++||||+++. ..++..++.++..+.+.........+.+.+. ...+..
T Consensus 191 ~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~----~~~k~~ 265 (1054)
T 1gku_B 191 SKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV----NDESIS 265 (1054)
T ss_dssp THHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE----SCCCTT
T ss_pred cccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe----chhHHH
Confidence 67777777666 3568999999999877 5555555555544544444444556666554 245666
Q ss_pred HHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEe----ehhhhccC
Q 003881 459 WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIA----TDVAARGL 534 (789)
Q Consensus 459 ~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVa----T~v~~rGl 534 (789)
.|..++... .+++||||+++..|+.++..|... +.+..+||++ ..+++.|++|+++|||| |+++++||
T Consensus 266 ~L~~ll~~~--~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGI 337 (1054)
T 1gku_B 266 TLSSILEKL--GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGL 337 (1054)
T ss_dssp TTHHHHTTS--CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCS
T ss_pred HHHHHHhhc--CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEecc
Confidence 666766654 578999999999999999999988 9999999998 47889999999999999 89999999
Q ss_pred CCCCc-cEEEEEcCC-----------------------------------------------------------------
Q 003881 535 DIKSI-KSVVNFDIA----------------------------------------------------------------- 548 (789)
Q Consensus 535 DI~~v-~~VI~~d~p----------------------------------------------------------------- 548 (789)
|||+| ++||+||+|
T Consensus 338 Dip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 417 (1054)
T 1gku_B 338 DLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVR 417 (1054)
T ss_dssp CCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEE
T ss_pred ccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEe
Confidence 99996 999999999
Q ss_pred ------CCHHHHHHHHhhcCCCCCCCc--EEEEEEccccHHHHHHHHHHHHH
Q 003881 549 ------RDMDMHVHRIGRTGRAGDKDG--TAYTLVTQKEARFAGELVNSLIA 592 (789)
Q Consensus 549 ------~s~~~yiQriGR~gR~G~k~G--~~i~lv~~~d~~~~~~lv~~l~~ 592 (789)
.++..|+||+||+||.| +.| .+++|+...+...+..|.+.+..
T Consensus 418 ~~~~~~~~~~~yiQr~GRagR~g-~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 418 EGEVIFPDLRTYIQGSGRTSRLF-AGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp TTEEEEECHHHHHHHHHTTCCEE-TTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred ecceecCcHHHHhhhhchhhhcc-CCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 78999999999999987 444 48888888888888888888874
No 32
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-40 Score=409.26 Aligned_cols=318 Identities=19% Similarity=0.230 Sum_probs=255.9
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhh
Q 003881 244 GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (789)
Q Consensus 244 g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~ 323 (789)
+| .|+|+|.++++.+++++++|++++||+|||++|.++++..+. .+.++||++||++|+.|+++++.+++.
T Consensus 84 ~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~--------~g~rvL~l~PtkaLa~Q~~~~l~~~~~ 154 (1010)
T 2xgj_A 84 PF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK--------NKQRVIYTSPIKALSNQKYRELLAEFG 154 (1010)
T ss_dssp SS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH--------TTCEEEEEESSHHHHHHHHHHHHHHHS
T ss_pred CC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc--------cCCeEEEECChHHHHHHHHHHHHHHhC
Confidence 45 499999999999999999999999999999999999988762 367899999999999999999998864
Q ss_pred hcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcCCC
Q 003881 324 SHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD 403 (789)
Q Consensus 324 ~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~ 403 (789)
.+..++|+..... .++|+|+||++|..++.+....+.++++|||||||+|.++++...+..++..+++.
T Consensus 155 ----~vglltGd~~~~~-------~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~ 223 (1010)
T 2xgj_A 155 ----DVGLMTGDITINP-------DAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDK 223 (1010)
T ss_dssp ----CEEEECSSCEECT-------TCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTT
T ss_pred ----CEEEEeCCCccCC-------CCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCC
Confidence 6777888776542 48999999999999998877788999999999999999999999999999999999
Q ss_pred ceEEEEeccCcHHHHHHHHH---HhCCCeEEeeccccCcccceeEEEEecC---------CC------------------
Q 003881 404 RQTLLFSATMPRKVEKLARE---ILSDPVRVTVGEVGMANEDITQVVHVIP---------SD------------------ 453 (789)
Q Consensus 404 ~q~ll~SAT~~~~i~~l~~~---~l~~p~~i~i~~~~~~~~~i~q~~~~~~---------~~------------------ 453 (789)
.|+|+||||+++.. .++.+ ....+..+...... ...+.+.+.... ..
T Consensus 224 ~~il~LSATi~n~~-e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 300 (1010)
T 2xgj_A 224 VRYVFLSATIPNAM-EFAEWICKIHSQPCHIVYTNFR--PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQ 300 (1010)
T ss_dssp CEEEEEECCCTTHH-HHHHHHHHHHTSCEEEEEECCC--SSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC--
T ss_pred CeEEEEcCCCCCHH-HHHHHHHhhcCCCeEEEecCCC--cccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhh
Confidence 99999999998753 34444 34556555443322 122333322211 00
Q ss_pred ---------------------------cccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCc----------
Q 003881 454 ---------------------------AEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFK---------- 496 (789)
Q Consensus 454 ---------------------------~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~---------- 496 (789)
...+..++..+... ...++||||+++..|+.++..|...++.
T Consensus 301 ~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~ 379 (1010)
T 2xgj_A 301 IGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK-KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTK 379 (1010)
T ss_dssp ----------------------------CHHHHHHHHHHHH-TCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHH
T ss_pred hcccccccccccccccccccccccccchHHHHHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHH
Confidence 11122233333221 2348999999999999999998764432
Q ss_pred -----------------------------eeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEE---
Q 003881 497 -----------------------------AAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN--- 544 (789)
Q Consensus 497 -----------------------------v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~--- 544 (789)
+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+
T Consensus 380 ~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~ 459 (1010)
T 2xgj_A 380 IFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVR 459 (1010)
T ss_dssp HHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSE
T ss_pred HHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCc
Confidence 788999999999999999999999999999999999999999999999
Q ss_pred -EcC----CCCHHHHHHHHhhcCCCCC-CCcEEEEEEccc-cHHHHHH
Q 003881 545 -FDI----ARDMDMHVHRIGRTGRAGD-KDGTAYTLVTQK-EARFAGE 585 (789)
Q Consensus 545 -~d~----p~s~~~yiQriGR~gR~G~-k~G~~i~lv~~~-d~~~~~~ 585 (789)
||. |.++..|+||+||+||.|. ..|.||+|+++. +...+..
T Consensus 460 kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~ 507 (1010)
T 2xgj_A 460 KWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKG 507 (1010)
T ss_dssp EECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHH
T ss_pred ccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHH
Confidence 999 8999999999999999993 369999999865 4433333
No 33
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.8e-41 Score=416.50 Aligned_cols=332 Identities=20% Similarity=0.216 Sum_probs=213.0
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHh
Q 003881 243 QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (789)
Q Consensus 243 ~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~ 322 (789)
.++.+|+|+|.+++++++.++++|++++||+|||++|++|++.++...+. ..++++|||+||++|+.||+.++++++
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~---~~~~~vLvl~Pt~~L~~Q~~~~~~~~~ 320 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA---GRKAKVVFLATKVPVYEQQKNVFKHHF 320 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCS---SCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccc---cCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 35789999999999999999999999999999999999999887755321 236779999999999999999999999
Q ss_pred hhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhccc-ccCceeEEEEeccchhccCCChHHHH-HHHhh-
Q 003881 323 KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL-TMSRVTYLVLDEADRMFDLGFEPQIR-SIVGQ- 399 (789)
Q Consensus 323 ~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~-~l~~i~~lVvDEah~m~~~~f~~~i~-~il~~- 399 (789)
...++++..++|+.....+...+..+++|||+||++|.+.+....+ .+..+++|||||||++.+.+....+. .++..
T Consensus 321 ~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~ 400 (936)
T 4a2w_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 400 (936)
T ss_dssp HTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHH
T ss_pred cccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHh
Confidence 8889999999999877766666777799999999999999987766 78899999999999998765333322 22222
Q ss_pred ---cCCCceEEEEeccCc-----------HHHHHHHHHH------------------hCCCeEEeeccccCccc------
Q 003881 400 ---IRPDRQTLLFSATMP-----------RKVEKLAREI------------------LSDPVRVTVGEVGMANE------ 441 (789)
Q Consensus 400 ---l~~~~q~ll~SAT~~-----------~~i~~l~~~~------------------l~~p~~i~i~~~~~~~~------ 441 (789)
..+..|+|+||||+. ..+..+...+ +..|....+........
T Consensus 401 ~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l 480 (936)
T 4a2w_A 401 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 480 (936)
T ss_dssp HTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHH
T ss_pred hccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHH
Confidence 155689999999985 2222222221 12222111100000000
Q ss_pred ------------ce------eEEE-Ee-----------------------------------------------------
Q 003881 442 ------------DI------TQVV-HV----------------------------------------------------- 449 (789)
Q Consensus 442 ------------~i------~q~~-~~----------------------------------------------------- 449 (789)
.+ .+.. ..
T Consensus 481 ~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~ 560 (936)
T 4a2w_A 481 SNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 560 (936)
T ss_dssp HHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 00 0000 00
Q ss_pred -----------------------------------------------cCCCcccHHHHHHhcCCC---CCCCCEEEEecc
Q 003881 450 -----------------------------------------------IPSDAEKLPWLLEKLPGM---IDDGDVLVFASK 479 (789)
Q Consensus 450 -----------------------------------------------~~~~~~k~~~L~~~L~~~---~~~~kvLVF~~s 479 (789)
......|...|.++|.+. ....++||||++
T Consensus 561 ~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t 640 (936)
T 4a2w_A 561 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 640 (936)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESS
T ss_pred chhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCC
Confidence 000133455555555443 245799999999
Q ss_pred cccHHHHHHHHHHc------------CCceeeccCCCCHHHHHHHHHHhhc-CCcceEEeehhhhccCCCCCccEEEEEc
Q 003881 480 KTTVDEIESQLAQK------------GFKAAALHGDKDQASRMEILQKFKS-GVYHVLIATDVAARGLDIKSIKSVVNFD 546 (789)
Q Consensus 480 ~~~a~~l~~~L~~~------------g~~v~~lhg~~~~~eR~~~l~~F~~-G~~~VLVaT~v~~rGlDI~~v~~VI~~d 546 (789)
+..++.|+.+|... |..+..+||+|++.+|..+++.|++ |.++|||||+++++|||||+|++||+||
T Consensus 641 ~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD 720 (936)
T 4a2w_A 641 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYE 720 (936)
T ss_dssp HHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEES
T ss_pred HHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeC
Confidence 99999999999986 5556667889999999999999999 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccH
Q 003881 547 IARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (789)
Q Consensus 547 ~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~ 580 (789)
+|+|+..|+||+|| ||. +.|.+|+|++..+.
T Consensus 721 ~p~s~~~~iQr~GR-GR~--~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 721 YSGNVTKMIQVRGR-GRA--AGSKCILVTSKTEV 751 (936)
T ss_dssp CCSCSHHHHCC----------CCCEEEEESCHHH
T ss_pred CCCCHHHHHHhcCC-CCC--CCCEEEEEEeCCCH
Confidence 99999999999999 998 47999999987644
No 34
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=1.9e-41 Score=396.12 Aligned_cols=366 Identities=19% Similarity=0.254 Sum_probs=275.0
Q ss_pred ChhhcCCCHHHHH----HHHHHcCceeccCCCCCCCCCcccCCCCHHH---HHHHH-HcCCCCCcHHHHHHHHHHHcCCC
Q 003881 193 SASISGMSEQDVM----EYKKSLAIRVSGFDVPRPVKTFEDCGFSTQL---MHAIS-KQGYEKPTSIQCQALPIILSGRD 264 (789)
Q Consensus 193 ~~~i~~~s~~~~~----~~r~~~~i~v~~~~~P~pi~sf~~~~l~~~l---~~~l~-~~g~~~ptpiQ~~~i~~il~grd 264 (789)
.+.+..|+.++.. ++|..+.-.+.|. +++++ |++.+ .++.. ..|+ .|+++|..++|.+++|+
T Consensus 58 e~~~~~Lsd~eL~~kt~efk~rl~~~~~ge-------~ld~~-lpeafA~vrEa~~R~lG~-rP~~VQ~~~ip~Ll~G~- 127 (922)
T 1nkt_A 58 SDDVEKLTDAELRAKTDEFKRRLADQKNPE-------TLDDL-LPEAFAVAREAAWRVLDQ-RPFDVQVMGAAALHLGN- 127 (922)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHHCSSSCC-------CHHHH-HHHHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTTE-
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhcccCC-------CHHHH-HHHHHHHHHHHHHHHcCC-CCCHHHHHHHHhHhcCC-
Confidence 4567888888874 4444432211121 22222 22221 12222 3688 99999999999999998
Q ss_pred EEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHH
Q 003881 265 IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE 344 (789)
Q Consensus 265 vll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~ 344 (789)
|+.++||+|||++|++|++.+.+. ++.++||+||++||.|+.+++..++..+++++.+++||.+... +.
T Consensus 128 -Iaem~TGeGKTLa~~LP~~l~aL~--------g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~--r~ 196 (922)
T 1nkt_A 128 -VAEMKTGEGKTLTCVLPAYLNALA--------GNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDE--RR 196 (922)
T ss_dssp -EEECCTTSCHHHHTHHHHHHHHTT--------TSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHH--HH
T ss_pred -EEEecCCCccHHHHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHH--HH
Confidence 999999999999999999766542 4569999999999999999999999999999999999987543 33
Q ss_pred HhcCCcEEEeChHHH-HHHHhhc------ccccCceeEEEEeccchhc-cC---------------CChHHHHHHHhhcC
Q 003881 345 LKAGCEIVIATPGRL-IDMLKMK------ALTMSRVTYLVLDEADRMF-DL---------------GFEPQIRSIVGQIR 401 (789)
Q Consensus 345 l~~~~dIiV~Tp~~L-~~~l~~~------~~~l~~i~~lVvDEah~m~-~~---------------~f~~~i~~il~~l~ 401 (789)
+..++||+|+||++| +++|..+ .+.+..+.++||||||+|+ |. +|...+..++..++
T Consensus 197 ~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~ 276 (922)
T 1nkt_A 197 VAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLME 276 (922)
T ss_dssp HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSC
T ss_pred HhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCc
Confidence 444699999999999 7877653 4667889999999999998 43 47788999999997
Q ss_pred ---------CCceEE-----------------EEeccCcH---HHHHHH--HHHhC-C-------CeEEeeccc------
Q 003881 402 ---------PDRQTL-----------------LFSATMPR---KVEKLA--REILS-D-------PVRVTVGEV------ 436 (789)
Q Consensus 402 ---------~~~q~l-----------------l~SAT~~~---~i~~l~--~~~l~-~-------p~~i~i~~~------ 436 (789)
+.+|++ +||||++. .+...+ ..++. + ...+.+...
T Consensus 277 ~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~ 356 (922)
T 1nkt_A 277 KDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIVDEFTGRVLI 356 (922)
T ss_dssp BTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEEEBCSSSCCBCT
T ss_pred ccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecCceEEEecccCcccC
Confidence 678998 99999864 333322 22222 1 111111100
Q ss_pred -----------------------cCcccceeE----------------------------------------------EE
Q 003881 437 -----------------------GMANEDITQ----------------------------------------------VV 447 (789)
Q Consensus 437 -----------------------~~~~~~i~q----------------------------------------------~~ 447 (789)
..+...|.+ ..
T Consensus 357 grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtn~p~~R~d~~d 436 (922)
T 1nkt_A 357 GRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVSIPTNMPMIREDQSD 436 (922)
T ss_dssp TCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEECCCSSCCCCEECCC
T ss_pred CccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCCeEEeCCCCCcccccCCc
Confidence 000001110 00
Q ss_pred EecCCCcccHHHHHHhcCCCC-CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEe
Q 003881 448 HVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIA 526 (789)
Q Consensus 448 ~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVa 526 (789)
.+......|+..|+..+.... ...++||||+++..++.|+..|.+.|+++.+|||++.+.++..+...|+.| .||||
T Consensus 437 ~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIA 514 (922)
T 1nkt_A 437 LIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVA 514 (922)
T ss_dssp EEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEE
T ss_pred EEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEe
Confidence 112234557777777775432 345899999999999999999999999999999999888888888888887 69999
Q ss_pred ehhhhccCCCCCc----------------------------------------------------cEEEEEcCCCCHHHH
Q 003881 527 TDVAARGLDIKSI----------------------------------------------------KSVVNFDIARDMDMH 554 (789)
Q Consensus 527 T~v~~rGlDI~~v----------------------------------------------------~~VI~~d~p~s~~~y 554 (789)
|++++||+||+.+ .+||+|+.|.+...|
T Consensus 515 TnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy 594 (922)
T 1nkt_A 515 TNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRID 594 (922)
T ss_dssp ETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHH
T ss_pred cchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHH
Confidence 9999999999975 599999999999999
Q ss_pred HHHHhhcCCCCCCCcEEEEEEccccHHH
Q 003881 555 VHRIGRTGRAGDKDGTAYTLVTQKEARF 582 (789)
Q Consensus 555 iQriGR~gR~G~k~G~~i~lv~~~d~~~ 582 (789)
+||+||+||.| .+|.+++|++..|.-+
T Consensus 595 ~qr~GRTGRqG-dpG~s~fflSleD~l~ 621 (922)
T 1nkt_A 595 NQLRGRSGRQG-DPGESRFYLSLGDELM 621 (922)
T ss_dssp HHHHHTSSGGG-CCEEEEEEEETTSHHH
T ss_pred HHHhcccccCC-CCeeEEEEechhHHHH
Confidence 99999999999 6899999999887633
No 35
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.9e-41 Score=404.47 Aligned_cols=346 Identities=20% Similarity=0.250 Sum_probs=259.4
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHcC------CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCc
Q 003881 234 TQLMHAISKQGYEKPTSIQCQALPIILSG------RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (789)
Q Consensus 234 ~~l~~~l~~~g~~~ptpiQ~~~i~~il~g------rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~Pt 307 (789)
..+.+.+...+| .||++|.++++.++.+ +++|++++||||||++|++|++..+. .+.++|||+||
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~--------~g~qvlvlaPt 426 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE--------AGFQTAFMVPT 426 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH--------HTSCEEEECSC
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHH--------cCCeEEEEeCc
Confidence 344455677899 9999999999999875 59999999999999999999998873 36789999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHH---HHHHhcC-CcEEEeChHHHHHHHhhcccccCceeEEEEeccch
Q 003881 308 RELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ---FKELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (789)
Q Consensus 308 reLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~---~~~l~~~-~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~ 383 (789)
++||.|+++.+.+++...++++.+++|+....+. +..+..+ ++|||+||+.|.+ ...+.++++|||||+|+
T Consensus 427 r~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr 501 (780)
T 1gm5_A 427 SILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHR 501 (780)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCC
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccch
Confidence 9999999999999998889999999999876553 3445554 9999999987754 45688999999999999
Q ss_pred hccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHHHHHh
Q 003881 384 MFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463 (789)
Q Consensus 384 m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~ 463 (789)
+.. ..+..+......+|+++||||+.+... ...++.+.....+.........+...+ + ...+...+++.
T Consensus 502 ~g~-----~qr~~l~~~~~~~~vL~mSATp~p~tl--~~~~~g~~~~s~i~~~p~~r~~i~~~~--~--~~~~~~~l~~~ 570 (780)
T 1gm5_A 502 FGV-----KQREALMNKGKMVDTLVMSATPIPRSM--ALAFYGDLDVTVIDEMPPGRKEVQTML--V--PMDRVNEVYEF 570 (780)
T ss_dssp C----------CCCCSSSSCCCEEEEESSCCCHHH--HHHHTCCSSCEEECCCCSSCCCCEECC--C--CSSTHHHHHHH
T ss_pred hhH-----HHHHHHHHhCCCCCEEEEeCCCCHHHH--HHHHhCCcceeeeeccCCCCcceEEEE--e--ccchHHHHHHH
Confidence 532 222333334457899999999866543 333444433222322222223333221 1 12334444444
Q ss_pred cCCC-CCCCCEEEEecccc--------cHHHHHHHHHH---cCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhh
Q 003881 464 LPGM-IDDGDVLVFASKKT--------TVDEIESQLAQ---KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAA 531 (789)
Q Consensus 464 L~~~-~~~~kvLVF~~s~~--------~a~~l~~~L~~---~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~ 531 (789)
+... ....+++|||+... .++.+++.|.. .++.+..+||+|++.+|..+++.|++|+++|||||++++
T Consensus 571 i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie 650 (780)
T 1gm5_A 571 VRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIE 650 (780)
T ss_dssp HHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCC
T ss_pred HHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence 4332 24568999999764 47788888887 478999999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEEcCCC-CHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 003881 532 RGLDIKSIKSVVNFDIAR-DMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAM 606 (789)
Q Consensus 532 rGlDI~~v~~VI~~d~p~-s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~l~~~~q~vp~~l~~~a~ 606 (789)
+|+|+|++++||++++|. +...|.||+||+||.| +.|.|++++++.+. .....++.+......+.....++..
T Consensus 651 ~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g-~~g~~ill~~~~~~-~~~~rl~~l~~~~dgf~iae~dL~~ 724 (780)
T 1gm5_A 651 VGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGG-QEAYCFLVVGDVGE-EAMERLRFFTLNTDGFKIAEYDLKT 724 (780)
T ss_dssp SCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSS-TTCEEECCCCSCCH-HHHHHHHHHHTCCCSHHHHHHHHHS
T ss_pred ccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCC-CCCEEEEEECCCCh-HHHHHHHHHHhhhccchhhHhhHhc
Confidence 999999999999999996 6888999999999999 67999999884433 3445566777777766555555543
No 36
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.1e-41 Score=408.15 Aligned_cols=324 Identities=23% Similarity=0.299 Sum_probs=229.2
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHH-HHHHHHHhhh
Q 003881 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI-YLETKKFAKS 324 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi-~~~~~~~~~~ 324 (789)
.+|+|+|.+++++++.++++|++++||+|||++|++|++.++...+. ...+.++|||+||++|+.|| ++++++++..
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH--HTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc--cCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 47999999999999999999999999999999999999988765321 12236799999999999999 9999999864
Q ss_pred cCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHH------hhcccccCceeEEEEeccchhccCCChHHHH-HHH
Q 003881 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDML------KMKALTMSRVTYLVLDEADRMFDLGFEPQIR-SIV 397 (789)
Q Consensus 325 ~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l------~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~-~il 397 (789)
++++..++|+.........+...++|||+||++|...+ ....+.+..+++|||||||++....+...+. .++
T Consensus 84 -~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l 162 (699)
T 4gl2_A 84 -WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYL 162 (699)
T ss_dssp -TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHH
T ss_pred -CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHH
Confidence 48999999998877766777788999999999999988 4455678899999999999986654333333 222
Q ss_pred hh----cC---------CCceEEEEeccCcH-----------HHHHHHHHHhCCCeEEeecc---c-cCcccceeEEEEe
Q 003881 398 GQ----IR---------PDRQTLLFSATMPR-----------KVEKLAREILSDPVRVTVGE---V-GMANEDITQVVHV 449 (789)
Q Consensus 398 ~~----l~---------~~~q~ll~SAT~~~-----------~i~~l~~~~l~~p~~i~i~~---~-~~~~~~i~q~~~~ 449 (789)
.. .. +..|+|+||||+.. .+..++..+....+...... . ....... ..+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~-~~~~~ 241 (699)
T 4gl2_A 163 MQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPC-KKFAI 241 (699)
T ss_dssp HHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCE-EEEEE
T ss_pred HhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCc-eEEEE
Confidence 22 11 67899999999986 22333322221000000000 0 0000000 00000
Q ss_pred cCC-----------------------------------------------------------------------------
Q 003881 450 IPS----------------------------------------------------------------------------- 452 (789)
Q Consensus 450 ~~~----------------------------------------------------------------------------- 452 (789)
+..
T Consensus 242 ~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 321 (699)
T 4gl2_A 242 ADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMID 321 (699)
T ss_dssp EC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred cccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000
Q ss_pred ---------------------------------------------------------CcccHHHHHHhcCCCC---C-CC
Q 003881 453 ---------------------------------------------------------DAEKLPWLLEKLPGMI---D-DG 471 (789)
Q Consensus 453 ---------------------------------------------------------~~~k~~~L~~~L~~~~---~-~~ 471 (789)
...|...|.+.|.... . .+
T Consensus 322 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~ 401 (699)
T 4gl2_A 322 AYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESA 401 (699)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCC
Confidence 1122222223332211 1 67
Q ss_pred CEEEEecccccHHHHHHHHHHc------CCceeeccCC--------CCHHHHHHHHHHhhcCCcceEEeehhhhccCCCC
Q 003881 472 DVLVFASKKTTVDEIESQLAQK------GFKAAALHGD--------KDQASRMEILQKFKSGVYHVLIATDVAARGLDIK 537 (789)
Q Consensus 472 kvLVF~~s~~~a~~l~~~L~~~------g~~v~~lhg~--------~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~ 537 (789)
++||||+++..++.|+++|... ++.+..+||+ |++.+|..+++.|++|+++|||||+++++|||+|
T Consensus 402 ~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip 481 (699)
T 4gl2_A 402 RGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIK 481 (699)
T ss_dssp CEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCC
T ss_pred cEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccc
Confidence 9999999999999999999987 8999999999 9999999999999999999999999999999999
Q ss_pred CccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEcc
Q 003881 538 SIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (789)
Q Consensus 538 ~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~ 577 (789)
+|++||+||+|+|+..|+||+||+||.| .+++|+..
T Consensus 482 ~v~~VI~~d~p~s~~~~~Qr~GRArr~g----~~~~l~~~ 517 (699)
T 4gl2_A 482 ECNIVIRYGLVTNEIAMVQARGRARADE----STYVLVAH 517 (699)
T ss_dssp SCCCCEEESCCCCHHHHHHHHTTSCSSS----CEEEEEEE
T ss_pred cCCEEEEeCCCCCHHHHHHHcCCCCCCC----ceEEEEEe
Confidence 9999999999999999999999976543 44555544
No 37
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=3.5e-39 Score=336.06 Aligned_cols=239 Identities=47% Similarity=0.832 Sum_probs=223.0
Q ss_pred CCCHHHHHHHHHHcCceeccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhH
Q 003881 198 GMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTA 277 (789)
Q Consensus 198 ~~s~~~~~~~r~~~~i~v~~~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTl 277 (789)
.++++++..+++...+.+.+...|+|+.+|.+++|++.+++.|.+.||..|+|+|.++++.+++++|++++++||+|||+
T Consensus 2 ~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~ 81 (242)
T 3fe2_A 2 MRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTL 81 (242)
T ss_dssp ----CHHHHHHHHHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHH
T ss_pred CCCHHHHHHHHhcCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHH
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChH
Q 003881 278 AFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPG 357 (789)
Q Consensus 278 a~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~ 357 (789)
+|++|++.++...+......++++|||+||++|+.|+++.+++++...++++.+++||.....+...+..+++|+|+||+
T Consensus 82 ~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~ 161 (242)
T 3fe2_A 82 SYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPG 161 (242)
T ss_dssp HHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHH
T ss_pred HHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHH
Confidence 99999999998766555567889999999999999999999999999999999999999999888888899999999999
Q ss_pred HHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccc
Q 003881 358 RLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEV 436 (789)
Q Consensus 358 ~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~ 436 (789)
+|.+++......+.++++|||||||+|.+++|...+..++..+++++|+++||||+|+.+..+++.++.+|+.+.++..
T Consensus 162 ~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 162 RLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp HHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred HHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 9999998888889999999999999999999999999999999999999999999999999999999999999987643
No 38
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=1.5e-38 Score=396.14 Aligned_cols=323 Identities=18% Similarity=0.237 Sum_probs=257.6
Q ss_pred CCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHHc----CC--CEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEE
Q 003881 230 CGFSTQLMHAISK-QGYEKPTSIQCQALPIILS----GR--DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (789)
Q Consensus 230 ~~l~~~l~~~l~~-~g~~~ptpiQ~~~i~~il~----gr--dvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vL 302 (789)
+.++..+.+.+.. .+| .|||+|.++++.++. ++ |+|++++||+|||++|+++++..+. .++++|
T Consensus 586 ~~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~--------~g~~vl 656 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD--------NHKQVA 656 (1151)
T ss_dssp CCCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT--------TTCEEE
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH--------hCCeEE
Confidence 4566777777755 466 479999999999986 65 9999999999999999999887653 367899
Q ss_pred EEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHH---HHHHhcC-CcEEEeChHHHHHHHhhcccccCceeEEEE
Q 003881 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ---FKELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVL 378 (789)
Q Consensus 303 Il~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~---~~~l~~~-~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVv 378 (789)
|||||++||.||++.+.+++...++++..+++.....+. +..+..+ ++|+|+||+.|. ..+.+.++++|||
T Consensus 657 vlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 657 VLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIV 731 (1151)
T ss_dssp EECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEE
T ss_pred EEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEE
Confidence 999999999999999999888778899888887665443 3445554 999999997663 3456889999999
Q ss_pred eccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHH
Q 003881 379 DEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLP 458 (789)
Q Consensus 379 DEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~ 458 (789)
||||+ |......++..++...++|+||||+++....++...+.++..+.. .......+...+.... ......
T Consensus 732 DEaH~-----~g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~--~~~~r~~i~~~~~~~~-~~~i~~ 803 (1151)
T 2eyq_A 732 DEEHR-----FGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIAT--PPARRLAVKTFVREYD-SMVVRE 803 (1151)
T ss_dssp ESGGG-----SCHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCC--CCCBCBCEEEEEEECC-HHHHHH
T ss_pred echHh-----cChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEec--CCCCccccEEEEecCC-HHHHHH
Confidence 99999 455667778888888999999999877766665555544433322 2222233444333221 111122
Q ss_pred HHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHc--CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCC
Q 003881 459 WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDI 536 (789)
Q Consensus 459 ~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~--g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI 536 (789)
.++.. ...++++||||+++..++.+++.|.+. ++.+..+||+|++.+|..+++.|++|+++|||||+++++||||
T Consensus 804 ~il~~---l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDi 880 (1151)
T 2eyq_A 804 AILRE---ILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI 880 (1151)
T ss_dssp HHHHH---HTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCC
T ss_pred HHHHH---HhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecc
Confidence 23333 335689999999999999999999987 7899999999999999999999999999999999999999999
Q ss_pred CCccEEEEEcC-CCCHHHHHHHHhhcCCCCCCCcEEEEEEccc
Q 003881 537 KSIKSVVNFDI-ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK 578 (789)
Q Consensus 537 ~~v~~VI~~d~-p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~ 578 (789)
|++++||+++. ++++..|+||+||+||.| +.|.||+++.+.
T Consensus 881 p~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g-~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 881 PTANTIIIERADHFGLAQLHQLRGRVGRSH-HQAYAWLLTPHP 922 (1151)
T ss_dssp TTEEEEEETTTTSSCHHHHHHHHTTCCBTT-BCEEEEEEECCG
T ss_pred cCCcEEEEeCCCCCCHHHHHHHHhccCcCC-CceEEEEEECCc
Confidence 99999999998 579999999999999999 679999998764
No 39
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2.5e-39 Score=397.50 Aligned_cols=308 Identities=20% Similarity=0.234 Sum_probs=245.7
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003881 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (789)
Q Consensus 247 ~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~ 326 (789)
.|+|+|.++|+.+++++++|++++||+|||++|+++++..+ ..++++||++||++|+.|+++.+.+++. +
T Consensus 39 ~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~--------~~g~~vlvl~PtraLa~Q~~~~l~~~~~--~ 108 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAH--------RNMTKTIYTSPIKALSNQKFRDFKETFD--D 108 (997)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHH--------HTTCEEEEEESCGGGHHHHHHHHHTTC----
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHH--------hcCCeEEEEeCCHHHHHHHHHHHHHHcC--C
Confidence 58999999999999999999999999999999999988765 2467899999999999999999998754 6
Q ss_pred CeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcCCCceE
Q 003881 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 406 (789)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ 406 (789)
+++..++|+..... .++|+|+||++|..++......+..+.+|||||||++.+++|...+..++..+++..|+
T Consensus 109 ~~v~~l~G~~~~~~-------~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~i 181 (997)
T 4a4z_A 109 VNIGLITGDVQINP-------DANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKF 181 (997)
T ss_dssp CCEEEECSSCEECT-------TSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEE
T ss_pred CeEEEEeCCCccCC-------CCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCE
Confidence 78889999876543 38999999999999998877788999999999999999999999999999999999999
Q ss_pred EEEeccCcHHHHHHHHHHhC---CCeEEeeccccCcccceeEEEEe----------------------------------
Q 003881 407 LLFSATMPRKVEKLAREILS---DPVRVTVGEVGMANEDITQVVHV---------------------------------- 449 (789)
Q Consensus 407 ll~SAT~~~~i~~l~~~~l~---~p~~i~i~~~~~~~~~i~q~~~~---------------------------------- 449 (789)
|+||||+++.. +++.++.. .+..+.... .....+.+.+..
T Consensus 182 IlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~--~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 258 (997)
T 4a4z_A 182 ILLSATVPNTY-EFANWIGRTKQKNIYVISTP--KRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGA 258 (997)
T ss_dssp EEEECCCTTHH-HHHHHHHHHHTCCEEEEECS--SCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-------
T ss_pred EEEcCCCCChH-HHHHHHhcccCCceEEEecC--CCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccc
Confidence 99999998654 55655532 222221111 111111111100
Q ss_pred ----------------------------------------------------------cCCCcccHHHHHHhcCCCCCCC
Q 003881 450 ----------------------------------------------------------IPSDAEKLPWLLEKLPGMIDDG 471 (789)
Q Consensus 450 ----------------------------------------------------------~~~~~~k~~~L~~~L~~~~~~~ 471 (789)
......++..++..+... ...
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~-~~~ 337 (997)
T 4a4z_A 259 PSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR-ELL 337 (997)
T ss_dssp ----------------------------------------------------------CCCCTTHHHHHHHHHHHT-TCC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhC-CCC
Confidence 001122344555555432 346
Q ss_pred CEEEEecccccHHHHHHHHHHcCC---------------------------------------ceeeccCCCCHHHHHHH
Q 003881 472 DVLVFASKKTTVDEIESQLAQKGF---------------------------------------KAAALHGDKDQASRMEI 512 (789)
Q Consensus 472 kvLVF~~s~~~a~~l~~~L~~~g~---------------------------------------~v~~lhg~~~~~eR~~~ 512 (789)
++||||+++..|+.++..|...++ .+..+||+|++.+|..+
T Consensus 338 ~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v 417 (997)
T 4a4z_A 338 PMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELI 417 (997)
T ss_dssp SEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHH
Confidence 999999999999999999976555 47899999999999999
Q ss_pred HHHhhcCCcceEEeehhhhccCCCCCccEEEEEcCCC---------CHHHHHHHHhhcCCCC-CCCcEEEEEEc
Q 003881 513 LQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIAR---------DMDMHVHRIGRTGRAG-DKDGTAYTLVT 576 (789)
Q Consensus 513 l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~---------s~~~yiQriGR~gR~G-~k~G~~i~lv~ 576 (789)
++.|++|.++|||||+++++|||+|+ ..||+++.+. ++..|+||+||+||.| ...|.||+++.
T Consensus 418 ~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 418 EILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp HHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECC
T ss_pred HHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecC
Confidence 99999999999999999999999999 5555544444 9999999999999998 55788988883
No 40
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.9e-38 Score=402.90 Aligned_cols=344 Identities=15% Similarity=0.193 Sum_probs=264.8
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC-CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHH
Q 003881 232 FSTQLMHAISKQGYEKPTSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTREL 310 (789)
Q Consensus 232 l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~g-rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreL 310 (789)
|.....+.|...+|..++|+|.++++.++.+ +|++++||||||||++|.+|++.++... .+.++|||+|+++|
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~------~~~kavyi~P~raL 984 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS------SEGRCVYITPMEAL 984 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC------TTCCEEEECSCHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC------CCCEEEEEcChHHH
Confidence 5566778888889999999999999999865 6899999999999999999999998653 35679999999999
Q ss_pred HHHHHHHHHHH-hhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhh--cccccCceeEEEEeccchhccC
Q 003881 311 AHQIYLETKKF-AKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM--KALTMSRVTYLVLDEADRMFDL 387 (789)
Q Consensus 311 a~Qi~~~~~~~-~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~--~~~~l~~i~~lVvDEah~m~~~ 387 (789)
|.|++..+.+. ....++++..++|+..... .....++|+||||++|..++.+ ....+.++.+|||||+|.|.+.
T Consensus 985 a~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~---~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~ 1061 (1724)
T 4f92_B 985 AEQVYMDWYEKFQDRLNKKVVLLTGETSTDL---KLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE 1061 (1724)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEECCSCHHHHH---HHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST
T ss_pred HHHHHHHHHHHhchhcCCEEEEEECCCCcch---hhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC
Confidence 99999999764 4557899998888754322 2234589999999999877764 2334788999999999988774
Q ss_pred CChHHHHHHHh-------hcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCccc----
Q 003881 388 GFEPQIRSIVG-------QIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEK---- 456 (789)
Q Consensus 388 ~f~~~i~~il~-------~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k---- 456 (789)
....+..++. .+++..|+|+||||+++ ..+++.|+...+..+...........+...+.........
T Consensus 1062 -rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~ 1139 (1724)
T 4f92_B 1062 -NGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLL 1139 (1724)
T ss_dssp -THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHH
T ss_pred -CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhh
Confidence 5655555544 34578999999999985 5778888766543333322223333344444333322111
Q ss_pred --HHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHc----------------------------------CCceeec
Q 003881 457 --LPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK----------------------------------GFKAAAL 500 (789)
Q Consensus 457 --~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~----------------------------------g~~v~~l 500 (789)
...+...+......+++||||+++..|+.++..|... ...++.+
T Consensus 1140 ~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~h 1219 (1724)
T 4f92_B 1140 SMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYL 1219 (1724)
T ss_dssp TTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEE
T ss_pred hhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEE
Confidence 1122333333445679999999999999888776431 2348899
Q ss_pred cCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEE----Ec------CCCCHHHHHHHHhhcCCCC-CCCc
Q 003881 501 HGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN----FD------IARDMDMHVHRIGRTGRAG-DKDG 569 (789)
Q Consensus 501 hg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~----~d------~p~s~~~yiQriGR~gR~G-~k~G 569 (789)
|++|++.+|..+.+.|++|.++|||||+++++|||+|...+||. || .|.++.+|+||+|||||.| +..|
T Consensus 1220 HagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G 1299 (1724)
T 4f92_B 1220 HEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEG 1299 (1724)
T ss_dssp CTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCE
T ss_pred CCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCce
Confidence 99999999999999999999999999999999999999988883 33 3568999999999999999 4479
Q ss_pred EEEEEEccccHHHHHHH
Q 003881 570 TAYTLVTQKEARFAGEL 586 (789)
Q Consensus 570 ~~i~lv~~~d~~~~~~l 586 (789)
.|++|+...+..++..+
T Consensus 1300 ~avll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1300 RCVIMCQGSKKDFFKKF 1316 (1724)
T ss_dssp EEEEEEEGGGHHHHHHH
T ss_pred EEEEEecchHHHHHHHH
Confidence 99999998887766554
No 41
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=1.3e-40 Score=390.28 Aligned_cols=323 Identities=16% Similarity=0.163 Sum_probs=239.4
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHH
Q 003881 230 CGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRE 309 (789)
Q Consensus 230 ~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~Ptre 309 (789)
+++++.+++.|... ...++|+|+++++.+++++|+|++++||||||++|++|++.+++. .++++|||+|||+
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-------~~~~vLvl~Ptre 226 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-------RRLRTLILAPTRV 226 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------TTCCEEEEESSHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCeEEEEcChHH
Confidence 34555554444432 478899998899999999999999999999999999999998864 3578999999999
Q ss_pred HHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCC
Q 003881 310 LAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGF 389 (789)
Q Consensus 310 La~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f 389 (789)
||.|+++.++ ++.+. +.+.... .....+..|.++|.+.|...+... ..+.++++|||||||+| +.+|
T Consensus 227 La~Qi~~~l~------~~~v~-~~~~~l~----~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~ 293 (618)
T 2whx_A 227 VAAEMEEALR------GLPIR-YQTPAVK----SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCS 293 (618)
T ss_dssp HHHHHHHHTT------TSCEE-ECCTTSS----CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHH
T ss_pred HHHHHHHHhc------CCcee-Eecccce----eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccH
Confidence 9999987775 23333 2221100 001123567788888887766544 45889999999999998 6677
Q ss_pred hHHHHHHHhhcC-CCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHHHHHhcCCCC
Q 003881 390 EPQIRSIVGQIR-PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI 468 (789)
Q Consensus 390 ~~~i~~il~~l~-~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~ 468 (789)
...+..++..++ +++|+|+||||++..+..++. .++..+.+... ++. .++..++..+.+
T Consensus 294 ~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~-------------~~~--~~~~~ll~~l~~-- 353 (618)
T 2whx_A 294 VAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE-------------IPE--RSWNTGFDWITD-- 353 (618)
T ss_dssp HHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECC-------------CCS--SCCSSSCHHHHH--
T ss_pred HHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeeccc-------------CCH--HHHHHHHHHHHh--
Confidence 778888877775 789999999999876432222 12322222111 111 111111222222
Q ss_pred CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEE------
Q 003881 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSV------ 542 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~V------ 542 (789)
..+++||||+++..++.+++.|...++.+..+||. +|.++++.|++|+.+|||||+++++||||+ +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~ 428 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRC 428 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEE
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcce
Confidence 25699999999999999999999999999999984 688899999999999999999999999997 8888
Q ss_pred --------------EEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEc---cccHHHHHHHHHHHHHcCCCcc
Q 003881 543 --------------VNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVT---QKEARFAGELVNSLIAAGQNVS 598 (789)
Q Consensus 543 --------------I~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~---~~d~~~~~~lv~~l~~~~q~vp 598 (789)
|+|++|.+..+|+||+||+||.|.+.|.||+|++ +.+...+..+...+......++
T Consensus 429 ~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~~ 501 (618)
T 2whx_A 429 LKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTP 501 (618)
T ss_dssp EEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCT
T ss_pred ecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhccccccCC
Confidence 8889999999999999999999856899999998 7777777777666644444443
No 42
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1e-37 Score=399.08 Aligned_cols=338 Identities=19% Similarity=0.265 Sum_probs=260.6
Q ss_pred CCCCCcHHHHHHHHHHH-cCCCEEEEccCCChhhHHHHHHHHHHHhcCccc---cccCCCeEEEEcCcHHHHHHHHHHHH
Q 003881 244 GYEKPTSIQCQALPIIL-SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPEL---QKEEGPIGVICAPTRELAHQIYLETK 319 (789)
Q Consensus 244 g~~~ptpiQ~~~i~~il-~grdvll~a~TGsGKTla~llpil~~l~~~~~~---~~~~gp~vLIl~PtreLa~Qi~~~~~ 319 (789)
||++|+++|.+++|.++ +++|+|++||||||||++|.++++..+.+.... ....+.++|||+|+++||.|+++.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 78999999999999988 478999999999999999999999999764322 22357789999999999999999999
Q ss_pred HHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcc--cccCceeEEEEeccchhccCCChHHHHHHH
Q 003881 320 KFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKA--LTMSRVTYLVLDEADRMFDLGFEPQIRSIV 397 (789)
Q Consensus 320 ~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~--~~l~~i~~lVvDEah~m~~~~f~~~i~~il 397 (789)
+.+...+++|..++|+...... ....++|+||||+++..++.+.. ..+..+.+|||||+|.+.+ ..+..+..++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 9988899999999998765432 13459999999999876665432 2478899999999997765 5666665554
Q ss_pred h-------hcCCCceEEEEeccCcHHHHHHHHHHhCCCe-EEeeccccCcccceeEEEEecCCCc--cc----HHHHHHh
Q 003881 398 G-------QIRPDRQTLLFSATMPRKVEKLAREILSDPV-RVTVGEVGMANEDITQVVHVIPSDA--EK----LPWLLEK 463 (789)
Q Consensus 398 ~-------~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~-~i~i~~~~~~~~~i~q~~~~~~~~~--~k----~~~L~~~ 463 (789)
. .++++.|+|++|||+|+ .++++.|+..++. .+........+..+.+.+..+.... .+ ...+.+.
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEK 310 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHH
Confidence 4 34678999999999985 5777877655431 1111111222233444443332211 11 1233445
Q ss_pred cCCCCCCCCEEEEecccccHHHHHHHHHHc-------------------------------------CCceeeccCCCCH
Q 003881 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQK-------------------------------------GFKAAALHGDKDQ 506 (789)
Q Consensus 464 L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~-------------------------------------g~~v~~lhg~~~~ 506 (789)
+.+....+++||||+++..|+.++..|.+. ...++.+||+|++
T Consensus 311 v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~ 390 (1724)
T 4f92_B 311 IMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTR 390 (1724)
T ss_dssp HTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCT
T ss_pred HHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCH
Confidence 555556779999999999999999888642 2347899999999
Q ss_pred HHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEE----EcC------CCCHHHHHHHHhhcCCCC-CCCcEEEEEE
Q 003881 507 ASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN----FDI------ARDMDMHVHRIGRTGRAG-DKDGTAYTLV 575 (789)
Q Consensus 507 ~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~----~d~------p~s~~~yiQriGR~gR~G-~k~G~~i~lv 575 (789)
.+|..+.+.|++|.++|||||+++++|||+|.+++||. |++ |-++.+|+||+|||||.| ...|.++++.
T Consensus 391 ~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~ 470 (1724)
T 4f92_B 391 VDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILIT 470 (1724)
T ss_dssp HHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEE
T ss_pred HHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEe
Confidence 99999999999999999999999999999999999984 654 458999999999999998 4579999999
Q ss_pred ccccHHHHHHH
Q 003881 576 TQKEARFAGEL 586 (789)
Q Consensus 576 ~~~d~~~~~~l 586 (789)
.+.+...+..+
T Consensus 471 ~~~~~~~~~~l 481 (1724)
T 4f92_B 471 SHGELQYYLSL 481 (1724)
T ss_dssp ESTTCCHHHHH
T ss_pred cchhHHHHHHH
Confidence 88776555444
No 43
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=3.4e-39 Score=372.46 Aligned_cols=311 Identities=17% Similarity=0.148 Sum_probs=234.4
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003881 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~ 325 (789)
.+|+|+|.++++.++.++++|++++||+|||++|+++++..+.. ..+++|||+||++|+.||++++.++....
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-------~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~ 184 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-------YEGKILIIVPTTALTTQMADDFVDYRLFS 184 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH-------CSSEEEEEESSHHHHHHHHHHHHHTTSSC
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC-------CCCeEEEEECcHHHHHHHHHHHHHhhcCC
Confidence 48999999999999999999999999999999999988877642 23489999999999999999999986555
Q ss_pred CCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcCCCce
Q 003881 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405 (789)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q 405 (789)
++++..++++.....+ +...++|+|+||+.|.. .....+.++++|||||||++.. ..+..++..+.+..+
T Consensus 185 ~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~ 254 (510)
T 2oca_A 185 HAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMF 254 (510)
T ss_dssp GGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCE
T ss_pred ccceEEEecCCccccc---cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcE
Confidence 6788888988776654 44569999999997654 2335577899999999999765 567788888888899
Q ss_pred EEEEeccCcHHHHHHHH-HHhCCCeEEeecccc------CcccceeEEEEecC--------------------CCcccHH
Q 003881 406 TLLFSATMPRKVEKLAR-EILSDPVRVTVGEVG------MANEDITQVVHVIP--------------------SDAEKLP 458 (789)
Q Consensus 406 ~ll~SAT~~~~i~~l~~-~~l~~p~~i~i~~~~------~~~~~i~q~~~~~~--------------------~~~~k~~ 458 (789)
+|+||||+++....+.. ..+..+..+.+.... .....+.......+ ....+..
T Consensus 255 ~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (510)
T 2oca_A 255 KFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNK 334 (510)
T ss_dssp EEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHH
T ss_pred EEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHH
Confidence 99999999766433221 112223222221110 01111111111111 0111223
Q ss_pred HHHHhcCCCC-CCC-CEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEee-hhhhccCC
Q 003881 459 WLLEKLPGMI-DDG-DVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT-DVAARGLD 535 (789)
Q Consensus 459 ~L~~~L~~~~-~~~-kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT-~v~~rGlD 535 (789)
.+.+.+.... ..+ ++||||+ ...++.|++.|...+..+..+||++++.+|..+++.|++|+.+||||| +++++|+|
T Consensus 335 ~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiD 413 (510)
T 2oca_A 335 WIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGIS 413 (510)
T ss_dssp HHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCC
T ss_pred HHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccc
Confidence 3334333322 223 5666666 889999999999988899999999999999999999999999999999 99999999
Q ss_pred CCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEE
Q 003881 536 IKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLV 575 (789)
Q Consensus 536 I~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv 575 (789)
+|++++||++++|+++..|+||+||+||.|. .+.+++++
T Consensus 414 ip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~-~~~~v~i~ 452 (510)
T 2oca_A 414 VKNLHHVVLAHGVKSKIIVLQTIGRVLRKHG-SKTIATVW 452 (510)
T ss_dssp CCSEEEEEESSCCCSCCHHHHHHHHHHTTTC-CCCCCEEE
T ss_pred cccCcEEEEeCCCCCHHHHHHHHhcccccCC-CCceEEEE
Confidence 9999999999999999999999999999994 34333333
No 44
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.1e-38 Score=362.23 Aligned_cols=288 Identities=16% Similarity=0.166 Sum_probs=215.9
Q ss_pred CCCCCcHHHHHHHHHHHcCCCE-EEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHh
Q 003881 244 GYEKPTSIQCQALPIILSGRDI-IGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (789)
Q Consensus 244 g~~~ptpiQ~~~i~~il~grdv-ll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~ 322 (789)
|+.+|+|+|. +||.+++++++ |++++||||||++|++|++.+++. .++++|||+|||+||.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~--- 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-------RRLRTLILAPTRVVAAEMEEALR--- 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTT---
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-------cCCcEEEECCCHHHHHHHHHHhc---
Confidence 6788999985 79999999887 888999999999999999988754 35789999999999999988774
Q ss_pred hhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHh-hcC
Q 003881 323 KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVG-QIR 401 (789)
Q Consensus 323 ~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~-~l~ 401 (789)
++.+......... ....+..|.++|++.|...+... ..+.++++|||||||++ +..+...+..+.. ...
T Consensus 70 ---g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~ 139 (451)
T 2jlq_A 70 ---GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEM 139 (451)
T ss_dssp ---TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHT
T ss_pred ---Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcC
Confidence 3333322221111 11234679999999998877544 46889999999999986 4333333322322 235
Q ss_pred CCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHHHHHhcCCCCCCCCEEEEecccc
Q 003881 402 PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKT 481 (789)
Q Consensus 402 ~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~ 481 (789)
+++|+|+||||++..+.. .+..++..+.+..... .. .......++.+ ..+++||||+++.
T Consensus 140 ~~~~~i~~SAT~~~~~~~---~~~~~~~~~~~~~~~p-~~----------~~~~~~~~l~~------~~~~~lVF~~s~~ 199 (451)
T 2jlq_A 140 GEAAAIFMTATPPGSTDP---FPQSNSPIEDIEREIP-ER----------SWNTGFDWITD------YQGKTVWFVPSIK 199 (451)
T ss_dssp TSCEEEEECSSCTTCCCS---SCCCSSCEEEEECCCC-SS----------CCSSSCHHHHH------CCSCEEEECSSHH
T ss_pred CCceEEEEccCCCccchh---hhcCCCceEecCccCC-ch----------hhHHHHHHHHh------CCCCEEEEcCCHH
Confidence 689999999999864322 1223333332211000 00 00112223322 2569999999999
Q ss_pred cHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEc---------------
Q 003881 482 TVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFD--------------- 546 (789)
Q Consensus 482 ~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d--------------- 546 (789)
.++.++..|...++.+..+|+.+. ..+++.|++|+.+|||||+++++|||||+ ++||+||
T Consensus 200 ~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l 274 (451)
T 2jlq_A 200 AGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERV 274 (451)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEE
T ss_pred HHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccccccccee
Confidence 999999999999999999999764 57899999999999999999999999999 9999998
Q ss_pred -----CCCCHHHHHHHHhhcCCCCCCCcEEEEEEcc
Q 003881 547 -----IARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (789)
Q Consensus 547 -----~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~ 577 (789)
.|.+...|+||+||+||.|...|.|++|+..
T Consensus 275 ~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 275 ILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred eecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 9999999999999999999547889888644
No 45
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.1e-37 Score=356.52 Aligned_cols=295 Identities=20% Similarity=0.226 Sum_probs=222.6
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003881 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~ 325 (789)
..|+|+|.++++.++.++++|++++||+|||++|++++... +.++||||||++|+.||.+++.+|
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-----------~~~~Lvl~P~~~L~~Q~~~~~~~~---- 156 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-----------CSCEEEEESSHHHHHHHHHHGGGG----
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEECCHHHHHHHHHHHHhC----
Confidence 47999999999999999999999999999999999887653 456999999999999999999884
Q ss_pred CCe-EEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcCCCc
Q 003881 326 GIR-VSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR 404 (789)
Q Consensus 326 ~i~-v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~ 404 (789)
+++ +..++|+... ..+|+|+||+.|...+.. ...++++|||||||++.+..|.. ++..+ +..
T Consensus 157 ~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~ 219 (472)
T 2fwr_A 157 GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAP 219 (472)
T ss_dssp CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTSTTTHH----HHHTC-CCS
T ss_pred CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCChHHHH----HHHhc-CCC
Confidence 778 7777776543 478999999999876542 12468999999999999887753 34444 467
Q ss_pred eEEEEeccCcHH-------------------HHHHHHHHhCCCeEEeeccc--cC------------------------c
Q 003881 405 QTLLFSATMPRK-------------------VEKLAREILSDPVRVTVGEV--GM------------------------A 439 (789)
Q Consensus 405 q~ll~SAT~~~~-------------------i~~l~~~~l~~p~~i~i~~~--~~------------------------~ 439 (789)
++|++|||+.+. ...+...++..+..+.+... .. .
T Consensus 220 ~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 299 (472)
T 2fwr_A 220 FRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRR 299 (472)
T ss_dssp EEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTC
T ss_pred eEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 899999998731 22222222222211111000 00 0
Q ss_pred ccceeEEEE--------------------ecCCCcccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceee
Q 003881 440 NEDITQVVH--------------------VIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAA 499 (789)
Q Consensus 440 ~~~i~q~~~--------------------~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~ 499 (789)
...+.+.+. .......|...|.+++.. ....++||||+++..++.+++.|. +..
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~k~lvF~~~~~~~~~l~~~l~-----~~~ 373 (472)
T 2fwr_A 300 AEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER-HRKDKIIIFTRHNELVYRISKVFL-----IPA 373 (472)
T ss_dssp CSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH-TSSSCBCCBCSCHHHHHHHHHHTT-----CCB
T ss_pred hhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHhC-----cce
Confidence 000000000 000123355666666655 346799999999999999999883 678
Q ss_pred ccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCC--CcEEEEEEcc
Q 003881 500 LHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDK--DGTAYTLVTQ 577 (789)
Q Consensus 500 lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k--~G~~i~lv~~ 577 (789)
+||+++..+|..+++.|++|+++|||||+++++|+|+|++++||+|++|+++..|+||+||+||.|+. ...+|.|++.
T Consensus 374 ~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~ 453 (472)
T 2fwr_A 374 ITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 453 (472)
T ss_dssp CCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred eeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999943 4566777775
Q ss_pred c
Q 003881 578 K 578 (789)
Q Consensus 578 ~ 578 (789)
.
T Consensus 454 ~ 454 (472)
T 2fwr_A 454 G 454 (472)
T ss_dssp S
T ss_pred C
Confidence 4
No 46
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=1.4e-38 Score=360.20 Aligned_cols=286 Identities=19% Similarity=0.245 Sum_probs=201.0
Q ss_pred HHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCC
Q 003881 258 IILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMS 337 (789)
Q Consensus 258 ~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~ 337 (789)
++++++|+|++++||||||++|++|++.++.. +++++|||+||++||.|+++.++.+ .+.+..+..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-------~~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~~~~~- 69 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR-------RRLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQAF- 69 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTTTS------CEEEESSCC-
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh-------cCCeEEEEcchHHHHHHHHHHHhcC------CeEEecccc-
Confidence 45789999999999999999999999998754 3678999999999999999887643 222211110
Q ss_pred hHHHHHHHhcCCcEEEeChHHHHHHHhhc--------ccccCceeEEEEeccchhccCCChHHHHHHHhhc-CCCceEEE
Q 003881 338 KLDQFKELKAGCEIVIATPGRLIDMLKMK--------ALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPDRQTLL 408 (789)
Q Consensus 338 ~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~--------~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l-~~~~q~ll 408 (789)
-+|+||+++++++... ...+.++++|||||||+| +.++...+..+...+ +..+|+|+
T Consensus 70 -------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~ 135 (440)
T 1yks_A 70 -------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATIL 135 (440)
T ss_dssp -------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEE
T ss_pred -------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEE
Confidence 0366666555433322 234789999999999997 333332222222222 36799999
Q ss_pred EeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCC--CcccHHHHHHhcCCCCCCCCEEEEecccccHHHH
Q 003881 409 FSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPS--DAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEI 486 (789)
Q Consensus 409 ~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~--~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l 486 (789)
||||+++.+..++.. . ..+......++. ....+..+.+ ..+++||||+++..++.+
T Consensus 136 ~SAT~~~~~~~~~~~----~------------~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~lVF~~s~~~a~~l 193 (440)
T 1yks_A 136 MTATPPGTSDEFPHS----N------------GEIEDVQTDIPSEPWNTGHDWILA------DKRPTAWFLPSIRAANVM 193 (440)
T ss_dssp ECSSCTTCCCSSCCC----S------------SCEEEEECCCCSSCCSSSCHHHHH------CCSCEEEECSCHHHHHHH
T ss_pred EeCCCCchhhhhhhc----C------------CCeeEeeeccChHHHHHHHHHHHh------cCCCEEEEeCCHHHHHHH
Confidence 999998664322211 0 111111111111 1122233332 257999999999999999
Q ss_pred HHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEE-------------------EcC
Q 003881 487 ESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN-------------------FDI 547 (789)
Q Consensus 487 ~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~-------------------~d~ 547 (789)
++.|...++.+..+|| .+|..+++.|++|+++|||||+++++||||| +++||+ |+.
T Consensus 194 ~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~ 268 (440)
T 1yks_A 194 AASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPL 268 (440)
T ss_dssp HHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEE
T ss_pred HHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeecccc
Confidence 9999999999999999 4688999999999999999999999999999 999986 999
Q ss_pred CCCHHHHHHHHhhcCCCCCCCcEEEEEE---ccccHHHHHHHHHHHHHcCCCcc
Q 003881 548 ARDMDMHVHRIGRTGRAGDKDGTAYTLV---TQKEARFAGELVNSLIAAGQNVS 598 (789)
Q Consensus 548 p~s~~~yiQriGR~gR~G~k~G~~i~lv---~~~d~~~~~~lv~~l~~~~q~vp 598 (789)
|.++..|+||+||+||.|.+.|.|++|+ ++.+...+..+...+..+...++
T Consensus 269 p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~ 322 (440)
T 1yks_A 269 RISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVR 322 (440)
T ss_dssp ECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCG
T ss_pred ccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhcccccccc
Confidence 9999999999999999854689999996 67777777777666655555543
No 47
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=1.5e-38 Score=374.98 Aligned_cols=306 Identities=19% Similarity=0.232 Sum_probs=214.9
Q ss_pred HHHcCCC-----CCcHHHH-----HHHHHHH------cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEE
Q 003881 240 ISKQGYE-----KPTSIQC-----QALPIIL------SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (789)
Q Consensus 240 l~~~g~~-----~ptpiQ~-----~~i~~il------~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLI 303 (789)
|...||. .|||+|. ++||.++ .++|+|++++||||||++|++|++.++.. .++++||
T Consensus 203 l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-------~~~~~li 275 (673)
T 2wv9_A 203 LYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-------KRLRTAV 275 (673)
T ss_dssp EEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-------TTCCEEE
T ss_pred eeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCcEEE
Confidence 3345666 8999999 9999988 89999999999999999999999988754 3578999
Q ss_pred EcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccch
Q 003881 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (789)
Q Consensus 304 l~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~ 383 (789)
|+||++||.|+++.++.+ ++. ...+.... ....+.-+-+.+.+.+...+... ..+.++++|||||||+
T Consensus 276 laPTr~La~Q~~~~l~~~----~i~--~~~~~l~~-----v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~ 343 (673)
T 2wv9_A 276 LAPTRVVAAEMAEALRGL----PVR--YLTPAVQR-----EHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHF 343 (673)
T ss_dssp EESSHHHHHHHHHHTTTS----CCE--ECCC---C-----CCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTC
T ss_pred EccHHHHHHHHHHHHhcC----Cee--eecccccc-----cCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCcc
Confidence 999999999999887754 332 11110000 00011233444555554444332 4688999999999999
Q ss_pred hccCCChHHHHHHHhhc-CCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHHHHH
Q 003881 384 MFDLGFEPQIRSIVGQI-RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462 (789)
Q Consensus 384 m~~~~f~~~i~~il~~l-~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~ 462 (789)
+ +..+...+..+...+ +..+|+|+||||+++.+..+.. . ...+......+.. .+...++.
T Consensus 344 ~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~----~------------~~~i~~v~~~~~~--~~~~~~l~ 404 (673)
T 2wv9_A 344 T-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPD----T------------NSPVHDVSSEIPD--RAWSSGFE 404 (673)
T ss_dssp C-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCC----C------------SSCEEEEECCCCS--SCCSSCCH
T ss_pred c-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhcc----c------------CCceEEEeeecCH--HHHHHHHH
Confidence 7 222222333333333 3679999999999865322111 0 1111111111111 11111122
Q ss_pred hcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEE
Q 003881 463 KLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSV 542 (789)
Q Consensus 463 ~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~V 542 (789)
.+.+ ..+++||||+++..++.++..|...++.+..+||. +|..+++.|++|+++|||||+++++||||| +++|
T Consensus 405 ~l~~--~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~V 477 (673)
T 2wv9_A 405 WITD--YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRV 477 (673)
T ss_dssp HHHS--CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEE
T ss_pred HHHh--CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEE
Confidence 2222 36799999999999999999999999999999994 799999999999999999999999999999 9999
Q ss_pred EE--------------------EcCCCCHHHHHHHHhhcCCCCCCCcEEEEEE---ccccHHHHHHHHHHH
Q 003881 543 VN--------------------FDIARDMDMHVHRIGRTGRAGDKDGTAYTLV---TQKEARFAGELVNSL 590 (789)
Q Consensus 543 I~--------------------~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv---~~~d~~~~~~lv~~l 590 (789)
|+ ||+|.++..|+||+||+||.+.+.|.||+|+ ++.+..++..+...+
T Consensus 478 I~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 478 IDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp EECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred EECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 98 6789999999999999999943789999996 566666665554443
No 48
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=8.1e-37 Score=366.62 Aligned_cols=339 Identities=19% Similarity=0.251 Sum_probs=247.3
Q ss_pred CCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHc-CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCC
Q 003881 221 PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILS-GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGP 299 (789)
Q Consensus 221 P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~-grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp 299 (789)
+.++.+|.++++++.+.+.+...+ ..|+++|+++|+.++. +++++++++||+|||+ ++|++...... ....++
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~---~~~~g~ 141 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEM---PHLENT 141 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHC---GGGGTC
T ss_pred cCCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhcc---ccCCCc
Confidence 456788999999999999999887 7899999999988875 4679999999999998 46665332111 112367
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEe
Q 003881 300 IGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLD 379 (789)
Q Consensus 300 ~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvD 379 (789)
+++|++|+++||.|+++.+.... ++.+...+|+...... ......+|+|+||++|...+... ..+.++++||||
T Consensus 142 ~ilvl~P~r~La~q~~~~l~~~~---~~~v~~~vG~~i~~~~--~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlD 215 (773)
T 2xau_A 142 QVACTQPRRVAAMSVAQRVAEEM---DVKLGEEVGYSIRFEN--KTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILD 215 (773)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHT---TCCBTTTEEEEETTEE--ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEEC
T ss_pred eEEecCchHHHHHHHHHHHHHHh---CCchhheecceecccc--ccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEec
Confidence 79999999999999987665543 3333222221111000 01235899999999999877654 458899999999
Q ss_pred ccch-hccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHH
Q 003881 380 EADR-MFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLP 458 (789)
Q Consensus 380 Eah~-m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~ 458 (789)
|+|. +++..+...+...+....++.|+|+||||++. ..+. .++.++..+.+... ...+.+.+..... ..+..
T Consensus 216 Eah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~--~~l~-~~~~~~~vi~v~gr---~~pv~~~~~~~~~-~~~~~ 288 (773)
T 2xau_A 216 EAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA--EKFQ-RYFNDAPLLAVPGR---TYPVELYYTPEFQ-RDYLD 288 (773)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC--HHHH-HHTTSCCEEECCCC---CCCEEEECCSSCC-SCHHH
T ss_pred CccccccchHHHHHHHHHHHHhCCCceEEEEeccccH--HHHH-HHhcCCCcccccCc---ccceEEEEecCCc-hhHHH
Confidence 9995 66643332333333344568999999999964 3444 44554433443222 2234443332222 22222
Q ss_pred HHHHhcCC---CCCCCCEEEEecccccHHHHHHHHHH-----------cCCceeeccCCCCHHHHHHHHHHhh-----cC
Q 003881 459 WLLEKLPG---MIDDGDVLVFASKKTTVDEIESQLAQ-----------KGFKAAALHGDKDQASRMEILQKFK-----SG 519 (789)
Q Consensus 459 ~L~~~L~~---~~~~~kvLVF~~s~~~a~~l~~~L~~-----------~g~~v~~lhg~~~~~eR~~~l~~F~-----~G 519 (789)
.++..+.. ....+++||||+++..++.++..|.+ .++.+..+||+|++.+|..+++.|+ +|
T Consensus 289 ~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g 368 (773)
T 2xau_A 289 SAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRP 368 (773)
T ss_dssp HHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSC
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCC
Confidence 22222211 12467999999999999999999985 4788999999999999999999999 99
Q ss_pred CcceEEeehhhhccCCCCCccEEEEEcC------------------CCCHHHHHHHHhhcCCCCCCCcEEEEEEccccH
Q 003881 520 VYHVLIATDVAARGLDIKSIKSVVNFDI------------------ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (789)
Q Consensus 520 ~~~VLVaT~v~~rGlDI~~v~~VI~~d~------------------p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~ 580 (789)
..+|||||+++++|||||+|++||++++ |.+...|+||+||+||. +.|.||+|+++.+.
T Consensus 369 ~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~--~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 369 GRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT--RPGKCFRLYTEEAF 445 (773)
T ss_dssp CEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS--SSEEEEESSCHHHH
T ss_pred ceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC--CCCEEEEEecHHHh
Confidence 9999999999999999999999999777 88999999999999998 47999999987654
No 49
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=8.3e-36 Score=312.47 Aligned_cols=236 Identities=42% Similarity=0.721 Sum_probs=203.0
Q ss_pred cCceeccCCCCC--CCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHh
Q 003881 211 LAIRVSGFDVPR--PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (789)
Q Consensus 211 ~~i~v~~~~~P~--pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~ 288 (789)
+.+.+.+...|. ++.+|++++|++.+++.|...||..|+|+|.++++.++.++|++++++||+|||++|++|++.++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~ 86 (253)
T 1wrb_A 7 IPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLV 86 (253)
T ss_dssp CCCCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CceeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHH
Confidence 456677888887 899999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCccc----cccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHh
Q 003881 289 DQPEL----QKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLK 364 (789)
Q Consensus 289 ~~~~~----~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~ 364 (789)
..... ....++++|||+||++|+.||+++++++....++++..++||.....+...+..+++|+|+||++|.+++.
T Consensus 87 ~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~ 166 (253)
T 1wrb_A 87 CQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIE 166 (253)
T ss_dssp TTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHH
T ss_pred hhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHH
Confidence 54321 12345789999999999999999999998888899999999999888888888889999999999999998
Q ss_pred hcccccCceeEEEEeccchhccCCChHHHHHHHhhc--CC--CceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcc
Q 003881 365 MKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI--RP--DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMAN 440 (789)
Q Consensus 365 ~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l--~~--~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~ 440 (789)
.....+..+++|||||||+|++++|...+..++..+ +. .+|+++||||+++.+..++..++.+|..+.++......
T Consensus 167 ~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~ 246 (253)
T 1wrb_A 167 KNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTS 246 (253)
T ss_dssp TTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC------
T ss_pred cCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCc
Confidence 888889999999999999999999999999999854 33 68999999999999999999999999999988776666
Q ss_pred cceeEE
Q 003881 441 EDITQV 446 (789)
Q Consensus 441 ~~i~q~ 446 (789)
.+|.|.
T Consensus 247 ~~i~q~ 252 (253)
T 1wrb_A 247 DSIKQE 252 (253)
T ss_dssp ------
T ss_pred CCceec
Confidence 666654
No 50
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=1.5e-37 Score=361.69 Aligned_cols=279 Identities=23% Similarity=0.263 Sum_probs=213.2
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003881 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (789)
Q Consensus 247 ~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~ 326 (789)
.+.++|.++++.+..++++|++|+||||||++|.+|++. .+.++||++|||+||.|+++.+.+.. +
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~-----------~g~~vLVl~PTReLA~Qia~~l~~~~---g 282 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA-----------QGYKVLVLNPSVAATLGFGAYMSKAH---G 282 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH-----------TTCCEEEEESCHHHHHHHHHHHHHHH---S
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH-----------CCCeEEEEcchHHHHHHHHHHHHHHh---C
Confidence 344556666666778899999999999999999988875 24579999999999999988766554 6
Q ss_pred CeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcCCCce-
Q 003881 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ- 405 (789)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q- 405 (789)
..+...+|+.. +..+++|+|+||++| +....+.+.++++||||||| +++.+|...+..++..++..+|
T Consensus 283 ~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~~~~ 351 (666)
T 3o8b_A 283 IDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETAGAR 351 (666)
T ss_dssp CCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTTTCS
T ss_pred CCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhcCCc
Confidence 66777788754 245689999999998 45566778899999999996 5677788888889998887777
Q ss_pred -EEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHHHHHhcCCCCCCCCEEEEecccccHH
Q 003881 406 -TLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVD 484 (789)
Q Consensus 406 -~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~ 484 (789)
+++||||++..+. ...+....+.. ..... +... ..+.. + .....+++||||++++.++
T Consensus 352 llil~SAT~~~~i~------~~~p~i~~v~~---~~~~~---i~~~---~~~~~-----l-~~~~~~~vLVFv~Tr~~ae 410 (666)
T 3o8b_A 352 LVVLATATPPGSVT------VPHPNIEEVAL---SNTGE---IPFY---GKAIP-----I-EAIRGGRHLIFCHSKKKCD 410 (666)
T ss_dssp EEEEEESSCTTCCC------CCCTTEEEEEC---BSCSS---EEET---TEEEC-----G-GGSSSSEEEEECSCHHHHH
T ss_pred eEEEECCCCCcccc------cCCcceEEEee---cccch---hHHH---Hhhhh-----h-hhccCCcEEEEeCCHHHHH
Confidence 6778999987311 11111111100 00000 0000 00000 1 1224679999999999999
Q ss_pred HHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEE----------EEc--------
Q 003881 485 EIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVV----------NFD-------- 546 (789)
Q Consensus 485 ~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI----------~~d-------- 546 (789)
.+++.|.+.++.+..+||+|++.+ |.++..+|||||+++++||||+ +++|| |||
T Consensus 411 ~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~ 482 (666)
T 3o8b_A 411 ELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIE 482 (666)
T ss_dssp HHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEE
T ss_pred HHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccc
Confidence 999999999999999999999865 5566779999999999999997 99988 777
Q ss_pred ---CCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHH
Q 003881 547 ---IARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARF 582 (789)
Q Consensus 547 ---~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~ 582 (789)
.|.+...|+||+||+|| | +.|. |+|+++.+...
T Consensus 483 ~~~~P~s~~syiQRiGRtGR-g-~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 483 TTTVPQDAVSRSQRRGRTGR-G-RRGI-YRFVTPGERPS 518 (666)
T ss_dssp EEEEECBHHHHHHHHTTBCS-S-SCEE-EEESCCCCBCS
T ss_pred cccCcCCHHHHHHHhccCCC-C-CCCE-EEEEecchhhc
Confidence 89999999999999999 7 6799 99998876544
No 51
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=4.1e-35 Score=302.18 Aligned_cols=217 Identities=42% Similarity=0.703 Sum_probs=190.5
Q ss_pred ccCCCCCCCCCccc-CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccc-
Q 003881 216 SGFDVPRPVKTFED-CGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPEL- 293 (789)
Q Consensus 216 ~~~~~P~pi~sf~~-~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~- 293 (789)
....+|+|+.+|.+ +++++.+++.|.+.||.+|+|+|.++++.+++++|++++++||+|||++|++|++.++......
T Consensus 10 ~~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~ 89 (228)
T 3iuy_A 10 EKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR 89 (228)
T ss_dssp SCCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC------
T ss_pred ccCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchh
Confidence 34568999999999 7999999999999999999999999999999999999999999999999999999988653211
Q ss_pred cccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCce
Q 003881 294 QKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRV 373 (789)
Q Consensus 294 ~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i 373 (789)
....++++|||+||++||.|+++.++++. ..++++.+++|+.....+...+..+++|+|+||++|.+++......+.++
T Consensus 90 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 90 EQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp ---CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred hccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 12357889999999999999999999986 35789999999998888888888899999999999999998888889999
Q ss_pred eEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEee
Q 003881 374 TYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTV 433 (789)
Q Consensus 374 ~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i 433 (789)
++|||||||+|.+++|...+..++..+++++|+++||||+|+.+..++..++.+|+.+.+
T Consensus 169 ~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 169 TYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp CEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEC
T ss_pred eEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 999999999999999999999999999999999999999999999999999999988754
No 52
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=2.6e-36 Score=343.52 Aligned_cols=272 Identities=19% Similarity=0.256 Sum_probs=198.9
Q ss_pred HHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECC
Q 003881 256 LPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGG 335 (789)
Q Consensus 256 i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg 335 (789)
..++..++++|++++||||||++|++|++.+++. .++++|||+|||+||.|+++.+. ++.+....+.
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~ 81 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-------QRLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSA 81 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEECSHHHHHHHHHHTT------TSCEEECC--
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-------CCCcEEEECchHHHHHHHHHHhc------CceEeEEecc
Confidence 4456678999999999999999999999998764 35789999999999999988876 3333222221
Q ss_pred CChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccch-----hccCCChHHHHHHHhhcCCCceEEEEe
Q 003881 336 MSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR-----MFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 336 ~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~-----m~~~~f~~~i~~il~~l~~~~q~ll~S 410 (789)
... .-..+..+.++|.+.|...+... ..+.++++|||||||+ ++.++|...+. ..+.+|+|+||
T Consensus 82 ~~~-----~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~-----~~~~~~~il~S 150 (459)
T 2z83_A 82 VQR-----EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATKV-----ELGEAAAIFMT 150 (459)
T ss_dssp -----------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-----HTTSCEEEEEC
T ss_pred ccc-----CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHHh-----ccCCccEEEEE
Confidence 111 01234567788998887766543 4588999999999998 44444332221 23689999999
Q ss_pred ccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCC--CcccHHHHHHhcCCCCCCCCEEEEecccccHHHHHH
Q 003881 411 ATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPS--DAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIES 488 (789)
Q Consensus 411 AT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~--~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~ 488 (789)
||++..+..+... ..|+.... ..++. .......+.+ ..+++||||+++..++.+++
T Consensus 151 AT~~~~~~~~~~~--~~pi~~~~--------------~~~~~~~~~~~~~~l~~------~~~~~LVF~~s~~~~~~l~~ 208 (459)
T 2z83_A 151 ATPPGTTDPFPDS--NAPIHDLQ--------------DEIPDRAWSSGYEWITE------YAGKTVWFVASVKMGNEIAM 208 (459)
T ss_dssp SSCTTCCCSSCCC--SSCEEEEE--------------CCCCSSCCSSCCHHHHH------CCSCEEEECSCHHHHHHHHH
T ss_pred cCCCcchhhhccC--CCCeEEec--------------ccCCcchhHHHHHHHHh------cCCCEEEEeCChHHHHHHHH
Confidence 9998653222111 12222111 01111 1112222222 25799999999999999999
Q ss_pred HHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEE--------------------EcCC
Q 003881 489 QLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN--------------------FDIA 548 (789)
Q Consensus 489 ~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~--------------------~d~p 548 (789)
.|...++.+..+|+. +|..+++.|++|+.+|||||+++++|||||+ ++||+ |++|
T Consensus 209 ~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p 283 (459)
T 2z83_A 209 CLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSP 283 (459)
T ss_dssp HHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEE
T ss_pred HHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCC
Confidence 999999999999995 6888999999999999999999999999999 99999 7799
Q ss_pred CCHHHHHHHHhhcCCCCCCCcEEEEEEccc
Q 003881 549 RDMDMHVHRIGRTGRAGDKDGTAYTLVTQK 578 (789)
Q Consensus 549 ~s~~~yiQriGR~gR~G~k~G~~i~lv~~~ 578 (789)
.++..|+||+||+||.|.+.|.|++|++..
T Consensus 284 ~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 284 ITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 999999999999999994489999999875
No 53
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=7.8e-35 Score=328.71 Aligned_cols=270 Identities=21% Similarity=0.222 Sum_probs=195.1
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHH
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~ 340 (789)
.++++|++++||||||++|++|++.+++. .++++|||+||++||.|+++.+. ++.+.+..++...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~-------~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK-------KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS-- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC--------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc--
Confidence 36899999999999999999999977653 36789999999999999987764 4555544443221
Q ss_pred HHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhc-CCCceEEEEeccCcHHHHH
Q 003881 341 QFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPDRQTLLFSATMPRKVEK 419 (789)
Q Consensus 341 ~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l-~~~~q~ll~SAT~~~~i~~ 419 (789)
.-..+.-+.++|.+.+...+.. ...+.++++|||||||++ +..+..+...+.... ++.+|+|+||||+++.+..
T Consensus 66 ---~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~ 140 (431)
T 2v6i_A 66 ---ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEA 140 (431)
T ss_dssp ------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCS
T ss_pred ---cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhh
Confidence 1112456778899988776655 556889999999999996 333333433333332 5689999999999864221
Q ss_pred HHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceee
Q 003881 420 LAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAA 499 (789)
Q Consensus 420 l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~ 499 (789)
+. .....+......++ ..+...++..+.+ ..+++||||+++..++.+++.|...++.+..
T Consensus 141 ~~----------------~~~~~i~~~~~~~~--~~~~~~~~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~ 200 (431)
T 2v6i_A 141 FP----------------PSNSPIIDEETRIP--DKAWNSGYEWITE--FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLY 200 (431)
T ss_dssp SC----------------CCSSCCEEEECCCC--SSCCSSCCHHHHS--CSSCEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred hc----------------CCCCceeeccccCC--HHHHHHHHHHHHc--CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEE
Confidence 11 01111111111111 1122222233333 2568999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccE-----------------EEEEcCCCCHHHHHHHHhhcC
Q 003881 500 LHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKS-----------------VVNFDIARDMDMHVHRIGRTG 562 (789)
Q Consensus 500 lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~-----------------VI~~d~p~s~~~yiQriGR~g 562 (789)
+||+ +|..+++.|++|+++|||||+++++||||| +.+ ||+++.|.+...|+||+||+|
T Consensus 201 lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~G 275 (431)
T 2v6i_A 201 LNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIG 275 (431)
T ss_dssp ESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSS
T ss_pred eCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccC
Confidence 9997 578899999999999999999999999999 544 678999999999999999999
Q ss_pred CCCCCCcEEEEEE
Q 003881 563 RAGDKDGTAYTLV 575 (789)
Q Consensus 563 R~G~k~G~~i~lv 575 (789)
|.|.+.+.++++.
T Consensus 276 R~g~~~~~~~~~~ 288 (431)
T 2v6i_A 276 RNPEKLGDIYAYS 288 (431)
T ss_dssp CCTTCCCCEEEEC
T ss_pred CCCCCCCeEEEEc
Confidence 9985556666665
No 54
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=2.7e-34 Score=298.19 Aligned_cols=214 Identities=33% Similarity=0.532 Sum_probs=181.5
Q ss_pred ccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccc
Q 003881 216 SGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQK 295 (789)
Q Consensus 216 ~~~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~ 295 (789)
...+.|.++.+|++++|++.+++.|.+.||..|+|+|.++++.++++++++++++||+|||++|++|++.++...
T Consensus 21 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~----- 95 (237)
T 3bor_A 21 IESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE----- 95 (237)
T ss_dssp ------CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----
T ss_pred ccCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----
Confidence 445577889999999999999999999999999999999999999999999999999999999999999886432
Q ss_pred cCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcC-CcEEEeChHHHHHHHhhcccccCcee
Q 003881 296 EEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAG-CEIVIATPGRLIDMLKMKALTMSRVT 374 (789)
Q Consensus 296 ~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~-~dIiV~Tp~~L~~~l~~~~~~l~~i~ 374 (789)
..++++|||+||++|+.|+++.+++++...++.+..++|+.....+...+..+ ++|+|+||++|.+++......+..++
T Consensus 96 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~ 175 (237)
T 3bor_A 96 FKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIK 175 (237)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCC
T ss_pred CCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCc
Confidence 24678999999999999999999999888889999999998877777777666 89999999999999988878889999
Q ss_pred EEEEeccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeec
Q 003881 375 YLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVG 434 (789)
Q Consensus 375 ~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~ 434 (789)
+|||||||+|.+++|...+..++..++..+|+++||||+++.+..+++.++.+|..+.+.
T Consensus 176 ~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 176 MFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp EEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred EEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 999999999999999999999999999999999999999999999999999999888653
No 55
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=4.9e-34 Score=298.59 Aligned_cols=208 Identities=43% Similarity=0.717 Sum_probs=193.1
Q ss_pred CCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeE
Q 003881 222 RPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIG 301 (789)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~v 301 (789)
.++.+|+++++++.+++.|.+.||..|+++|.++++.++++++++++++||+|||++|++|++.++... ..++++
T Consensus 40 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~-----~~~~~~ 114 (249)
T 3ber_A 40 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET-----PQRLFA 114 (249)
T ss_dssp HHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-----CCSSCE
T ss_pred cccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC-----CCCceE
Confidence 457889999999999999999999999999999999999999999999999999999999999988654 246789
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhh-cccccCceeEEEEec
Q 003881 302 VICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM-KALTMSRVTYLVLDE 380 (789)
Q Consensus 302 LIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~-~~~~l~~i~~lVvDE 380 (789)
|||+||++|+.|+++.+++++...++++.+++|+.....+...+..+++|+|+||++|.+++.. ..+.+..+++|||||
T Consensus 115 lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDE 194 (249)
T 3ber_A 115 LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDE 194 (249)
T ss_dssp EEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECS
T ss_pred EEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcC
Confidence 9999999999999999999998889999999999998888888888999999999999998876 456788999999999
Q ss_pred cchhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeec
Q 003881 381 ADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVG 434 (789)
Q Consensus 381 ah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~ 434 (789)
||+|.+++|...+..++..+++.+|+++||||+++.+..+++.++.+|+.+.+.
T Consensus 195 ah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 195 ADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp HHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred hhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 999999999999999999999999999999999999999999999999988653
No 56
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.6e-34 Score=299.48 Aligned_cols=230 Identities=33% Similarity=0.574 Sum_probs=199.5
Q ss_pred HHHHHHHHcCceeccCCCCCCCCCcccC----CCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHH
Q 003881 203 DVMEYKKSLAIRVSGFDVPRPVKTFEDC----GFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 203 ~~~~~r~~~~i~v~~~~~P~pi~sf~~~----~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla 278 (789)
++..+|++..+.+.+..+|.|+.+|+++ ++++.+++.|.+.||..|+|+|.++++.++++++++++++||+|||++
T Consensus 3 ~~~~~~~~~~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 3 KINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHHHTTEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred hHHHHHHhCceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHH
Confidence 4677889999999999999999999987 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHH-HHhcCCcEEEeChH
Q 003881 279 FVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK-ELKAGCEIVIATPG 357 (789)
Q Consensus 279 ~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~-~l~~~~dIiV~Tp~ 357 (789)
|++|++.++... ...++++|||+||++|+.|+++++++++...++++.+++|+........ ....+++|+|+||+
T Consensus 83 ~~l~~l~~l~~~----~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~ 158 (245)
T 3dkp_A 83 FSIPILMQLKQP----ANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPN 158 (245)
T ss_dssp HHHHHHHHHCSC----CSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHH
T ss_pred HHHHHHHHHhhc----ccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHH
Confidence 999999988542 1346789999999999999999999999888888888777643332211 12346899999999
Q ss_pred HHHHHHhhc--ccccCceeEEEEeccchhcc---CCChHHHHHHHhhcC-CCceEEEEeccCcHHHHHHHHHHhCCCeEE
Q 003881 358 RLIDMLKMK--ALTMSRVTYLVLDEADRMFD---LGFEPQIRSIVGQIR-PDRQTLLFSATMPRKVEKLAREILSDPVRV 431 (789)
Q Consensus 358 ~L~~~l~~~--~~~l~~i~~lVvDEah~m~~---~~f~~~i~~il~~l~-~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i 431 (789)
+|.+++... ...+.++.+|||||||+|.+ .+|...+..++..+. +..|+++||||+|+.+..+++.++.+|+.+
T Consensus 159 ~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i 238 (245)
T 3dkp_A 159 RLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISV 238 (245)
T ss_dssp HHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEE
T ss_pred HHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEE
Confidence 999999775 46788999999999999998 568888888887664 578999999999999999999999999999
Q ss_pred eeccc
Q 003881 432 TVGEV 436 (789)
Q Consensus 432 ~i~~~ 436 (789)
.++..
T Consensus 239 ~~~~~ 243 (245)
T 3dkp_A 239 SIGAR 243 (245)
T ss_dssp EECC-
T ss_pred EeCCC
Confidence 88653
No 57
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.4e-33 Score=292.26 Aligned_cols=227 Identities=31% Similarity=0.504 Sum_probs=197.2
Q ss_pred HHHHHHHHHHcCceeccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHH
Q 003881 201 EQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFV 280 (789)
Q Consensus 201 ~~~~~~~r~~~~i~v~~~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~l 280 (789)
.+++..+++.+.. ..++++.+|+++++++.+++.|.+.||..|+|+|.++++.++++++++++++||+|||++|+
T Consensus 6 ~~~~~~~~~~~~~-----~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 6 RESISRLMQNYEK-----INVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp HHHHHHHHHTTTT-----CCGGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred HhHHHHHHhcccc-----CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 4455666665432 22567889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHH
Q 003881 281 LPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLI 360 (789)
Q Consensus 281 lpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~ 360 (789)
+|++.+++.... ....++++|||+||++|+.||++.++++....++++.+++|+.....+...+ .+++|+|+||++|.
T Consensus 81 ~~~l~~l~~~~~-~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~ 158 (236)
T 2pl3_A 81 VPVLEALYRLQW-TSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLL 158 (236)
T ss_dssp HHHHHHHHHTTC-CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHH
T ss_pred HHHHHHHHhhcc-cccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHH
Confidence 999998875432 1234788999999999999999999999887789999999998877665555 57999999999999
Q ss_pred HHHhhc-ccccCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeec
Q 003881 361 DMLKMK-ALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVG 434 (789)
Q Consensus 361 ~~l~~~-~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~ 434 (789)
+.+... .+.+.++++|||||||+|.+++|...+..++..+++.+|+++||||+++.+..+++.++.+|..+.+.
T Consensus 159 ~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 159 QHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp HHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred HHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 988764 46688999999999999999999999999999999999999999999999999999999999988764
No 58
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=5.6e-35 Score=343.31 Aligned_cols=304 Identities=17% Similarity=0.187 Sum_probs=191.5
Q ss_pred CCCcHHHHHHHHHHHc----C-CCEEEEccCCChhhHHHHHHHHHHHhcCc--cccccCCCeEEEEcCcHHHHHHHH-HH
Q 003881 246 EKPTSIQCQALPIILS----G-RDIIGIAKTGSGKTAAFVLPMIVHIMDQP--ELQKEEGPIGVICAPTRELAHQIY-LE 317 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~----g-rdvll~a~TGsGKTla~llpil~~l~~~~--~~~~~~gp~vLIl~PtreLa~Qi~-~~ 317 (789)
..|+|+|.++++.++. + +++|++++||+|||++++. ++..++... ......++++||||||++|+.||. +.
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~-~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQ-ISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHH-HHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 3799999999999886 4 6699999999999998554 455554421 001124678999999999999998 77
Q ss_pred HHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHh----hcccccCceeEEEEeccchhccCCChHHH
Q 003881 318 TKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLK----MKALTMSRVTYLVLDEADRMFDLGFEPQI 393 (789)
Q Consensus 318 ~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~----~~~~~l~~i~~lVvDEah~m~~~~f~~~i 393 (789)
++.+ +..+..+.++. +..+.+|+|+||++|...+. ...+....+++|||||||++.... ...+
T Consensus 256 ~~~~----~~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~ 322 (590)
T 3h1t_A 256 FTPF----GDARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNW 322 (590)
T ss_dssp CTTT----CSSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------C
T ss_pred HHhc----chhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHH
Confidence 7665 33444444322 23458999999999988764 233456779999999999987643 2455
Q ss_pred HHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccc----c-CcccceeEEEE-------------------e
Q 003881 394 RSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEV----G-MANEDITQVVH-------------------V 449 (789)
Q Consensus 394 ~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~----~-~~~~~i~q~~~-------------------~ 449 (789)
..++..++ ..++|+||||+..........++..++....... . .....+..... .
T Consensus 323 ~~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (590)
T 3h1t_A 323 REILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGRE 401 (590)
T ss_dssp HHHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC----------------
T ss_pred HHHHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccc
Confidence 66666665 4789999999875433333444444332211000 0 00000000000 0
Q ss_pred c------CCC-------cccHHH----HHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCc--------eeeccCCC
Q 003881 450 I------PSD-------AEKLPW----LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFK--------AAALHGDK 504 (789)
Q Consensus 450 ~------~~~-------~~k~~~----L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~--------v~~lhg~~ 504 (789)
+ ... ..+... |.+.+......+++||||+++.+|+.+++.|.+.+.. +..+||.+
T Consensus 402 ~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~ 481 (590)
T 3h1t_A 402 IPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEE 481 (590)
T ss_dssp -------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTT
T ss_pred cccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCC
Confidence 0 000 011112 2222333234579999999999999999999876432 77899998
Q ss_pred CHHHHHHHHHHhhcCCcc---eEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCC
Q 003881 505 DQASRMEILQKFKSGVYH---VLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG 565 (789)
Q Consensus 505 ~~~eR~~~l~~F~~G~~~---VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G 565 (789)
+. +|..+++.|++|+.+ |||||+++++|+|+|.|++||++++|+++..|+||+||++|.+
T Consensus 482 ~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~ 544 (590)
T 3h1t_A 482 GK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLR 544 (590)
T ss_dssp HH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCB
T ss_pred hH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccC
Confidence 64 799999999998766 8889999999999999999999999999999999999999987
No 59
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=9.1e-34 Score=292.79 Aligned_cols=212 Identities=27% Similarity=0.446 Sum_probs=185.4
Q ss_pred ccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccc
Q 003881 216 SGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQK 295 (789)
Q Consensus 216 ~~~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~ 295 (789)
.+...|.+..+|+++++++.+++.|.+.||..|+|+|.++++.+++++|++++++||+|||++|++|++.++...
T Consensus 15 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~----- 89 (230)
T 2oxc_A 15 TGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE----- 89 (230)
T ss_dssp ---------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----
T ss_pred cCCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----
Confidence 345667888999999999999999999999999999999999999999999999999999999999999887543
Q ss_pred cCCCeEEEEcCcHHHHHHHHHHHHHHhhhc-CCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCcee
Q 003881 296 EEGPIGVICAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVT 374 (789)
Q Consensus 296 ~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~-~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~ 374 (789)
..++++|||+||++|+.|+++.++++.... ++++.+++|+.....+...+ .+++|+|+||++|.+++....+.+.+++
T Consensus 90 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~ 168 (230)
T 2oxc_A 90 NLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIR 168 (230)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCC
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCC
Confidence 346789999999999999999999997654 78999999998876655444 4799999999999999988878889999
Q ss_pred EEEEeccchhccCC-ChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEee
Q 003881 375 YLVLDEADRMFDLG-FEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTV 433 (789)
Q Consensus 375 ~lVvDEah~m~~~~-f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i 433 (789)
+|||||||++.+++ |...+..++..++..+|+++||||+++.+..++..++.+|..+.+
T Consensus 169 ~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 169 LFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp EEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred EEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 99999999999997 999999999999989999999999999999999999999987764
No 60
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=7.1e-34 Score=305.51 Aligned_cols=212 Identities=32% Similarity=0.450 Sum_probs=186.8
Q ss_pred eccCCCCC---CCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC--CCEEEEccCCChhhHHHHHHHHHHHhc
Q 003881 215 VSGFDVPR---PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMD 289 (789)
Q Consensus 215 v~~~~~P~---pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~g--rdvll~a~TGsGKTla~llpil~~l~~ 289 (789)
+.+.+.+. ++.+|++++|++.+++.|...||..|||+|.++||.++.+ +|+|++++||||||++|++|++.++..
T Consensus 79 v~~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~ 158 (300)
T 3fmo_B 79 VLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP 158 (300)
T ss_dssp EECSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCT
T ss_pred eccCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhc
Confidence 44444444 4688999999999999999999999999999999999998 999999999999999999999998754
Q ss_pred CccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhc-CCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhh-cc
Q 003881 290 QPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM-KA 367 (789)
Q Consensus 290 ~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~-~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~-~~ 367 (789)
. ..++++|||+|||+||.|++..++.+.... ++.+.+++|+....... ..+++|||+||++|++++.+ ..
T Consensus 159 ~-----~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~ 230 (300)
T 3fmo_B 159 A-----NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKF 230 (300)
T ss_dssp T-----SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCC
T ss_pred c-----CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCC
Confidence 3 346789999999999999999999998754 68888888887654322 45689999999999999965 56
Q ss_pred cccCceeEEEEeccchhcc-CCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeec
Q 003881 368 LTMSRVTYLVLDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVG 434 (789)
Q Consensus 368 ~~l~~i~~lVvDEah~m~~-~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~ 434 (789)
+.+.++.+|||||||+|++ .+|...+..++..+++.+|+++||||+++.+..+++.++.+|..|.+.
T Consensus 231 ~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 231 IDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp CCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred CChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 7789999999999999998 789999999999999999999999999999999999999999988764
No 61
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=5.4e-34 Score=292.06 Aligned_cols=208 Identities=37% Similarity=0.574 Sum_probs=187.5
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEE
Q 003881 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (789)
Q Consensus 223 pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vL 302 (789)
|..+|+++++++.+++.|.+.||.+|+|+|.++++.++++++++++++||+|||++|++|++.++... ..++++|
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~-----~~~~~~l 76 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE-----RAEVQAV 76 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT-----SCSCCEE
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC-----cCCceEE
Confidence 45689999999999999999999999999999999999999999999999999999999999887542 3467899
Q ss_pred EEcCcHHHHHHHHHHHHHHhhhc----CCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEE
Q 003881 303 ICAPTRELAHQIYLETKKFAKSH----GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVL 378 (789)
Q Consensus 303 Il~PtreLa~Qi~~~~~~~~~~~----~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVv 378 (789)
||+||++|+.|++++++++.... ++.+.+++|+.....+...+..+++|+|+||++|.+++......+..+++|||
T Consensus 77 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lVi 156 (219)
T 1q0u_A 77 ITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVV 156 (219)
T ss_dssp EECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEE
T ss_pred EEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEE
Confidence 99999999999999999998765 78889999998766655555567899999999999999888788899999999
Q ss_pred eccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeecc
Q 003881 379 DEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGE 435 (789)
Q Consensus 379 DEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~ 435 (789)
||||++.+++|...+..++..+++.+|+++||||+++.+.++++.++.+|..+.+..
T Consensus 157 DEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 157 DEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp CSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred cCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 999999999999999999999999999999999999999999999999999887643
No 62
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=3.2e-34 Score=330.08 Aligned_cols=312 Identities=17% Similarity=0.230 Sum_probs=219.4
Q ss_pred CCCcHHHHHHHHHHH----cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHH
Q 003881 246 EKPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il----~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~ 321 (789)
..|+|+|.++++++. .++++|++++||+|||++++. ++..+... ....++|||||+ .|+.||.+++++|
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~-~i~~~~~~-----~~~~~~LIv~P~-~l~~qw~~e~~~~ 108 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIA-VFSDAKKE-----NELTPSLVICPL-SVLKNWEEELSKF 108 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHH-HHHHHHHT-----TCCSSEEEEECS-TTHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHH-HHHHHHhc-----CCCCCEEEEccH-HHHHHHHHHHHHH
Confidence 579999999999884 578999999999999998554 44444332 224568999996 5889999999999
Q ss_pred hhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcC
Q 003881 322 AKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR 401 (789)
Q Consensus 322 ~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~ 401 (789)
+. ++++.+++|+... .....++|+|+||+.|..... +....+++|||||||++.+.. ......+..++
T Consensus 109 ~~--~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l~ 176 (500)
T 1z63_A 109 AP--HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELK 176 (500)
T ss_dssp CT--TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSC
T ss_pred CC--CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHhhc
Confidence 75 5666666665432 112358999999999876443 344578999999999998754 34455555554
Q ss_pred CCceEEEEeccCcH-HHHHH---HH---------------------------------HHhCCCeEEeecccc----Ccc
Q 003881 402 PDRQTLLFSATMPR-KVEKL---AR---------------------------------EILSDPVRVTVGEVG----MAN 440 (789)
Q Consensus 402 ~~~q~ll~SAT~~~-~i~~l---~~---------------------------------~~l~~p~~i~i~~~~----~~~ 440 (789)
..+.+++|||+.. .+.++ +. .++. |..+...... ...
T Consensus 177 -~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~-~~~lrr~k~~~~~~~~l 254 (500)
T 1z63_A 177 -SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIIS-PFILRRTKYDKAIINDL 254 (500)
T ss_dssp -EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHT-TTEECCCTTCHHHHTTS
T ss_pred -cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHh-hHeeeecccccchhhcC
Confidence 4678999999733 22222 11 1111 2221110000 001
Q ss_pred cceeEEEEecC--------------------------------------------------------CCcccHHHHHHhc
Q 003881 441 EDITQVVHVIP--------------------------------------------------------SDAEKLPWLLEKL 464 (789)
Q Consensus 441 ~~i~q~~~~~~--------------------------------------------------------~~~~k~~~L~~~L 464 (789)
+........+. ....|...+.+++
T Consensus 255 p~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l 334 (500)
T 1z63_A 255 PDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEII 334 (500)
T ss_dssp CSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHH
Confidence 11111111111 1123444455555
Q ss_pred CCCC-CCCCEEEEecccccHHHHHHHHHHc-CCceeeccCCCCHHHHHHHHHHhhcC-Ccc-eEEeehhhhccCCCCCcc
Q 003881 465 PGMI-DDGDVLVFASKKTTVDEIESQLAQK-GFKAAALHGDKDQASRMEILQKFKSG-VYH-VLIATDVAARGLDIKSIK 540 (789)
Q Consensus 465 ~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~-g~~v~~lhg~~~~~eR~~~l~~F~~G-~~~-VLVaT~v~~rGlDI~~v~ 540 (789)
.... .+.++||||++...++.|...|... ++.+..+||++++.+|..+++.|+++ ..+ |||+|+++++|||++.++
T Consensus 335 ~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~ 414 (500)
T 1z63_A 335 EEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSAN 414 (500)
T ss_dssp HHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCS
T ss_pred HHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCC
Confidence 4432 3569999999999999999999885 99999999999999999999999998 555 799999999999999999
Q ss_pred EEEEEcCCCCHHHHHHHHhhcCCCCCC-CcEEEEEEccc
Q 003881 541 SVVNFDIARDMDMHVHRIGRTGRAGDK-DGTAYTLVTQK 578 (789)
Q Consensus 541 ~VI~~d~p~s~~~yiQriGR~gR~G~k-~G~~i~lv~~~ 578 (789)
+||+||+|||+..|+||+||++|.|++ ...+|.|++..
T Consensus 415 ~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 415 RVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp EEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred EEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 999999999999999999999999954 34567777765
No 63
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=3.1e-33 Score=283.08 Aligned_cols=202 Identities=35% Similarity=0.596 Sum_probs=187.0
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEE
Q 003881 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (789)
Q Consensus 225 ~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl 304 (789)
.+|++++|++.+++.|...||..|+|+|.++++.++++++++++++||+|||++|++|++.++... ..++++||+
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~~~~~lil 77 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK-----KDNIQAMVI 77 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT-----SCSCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc-----CCCeeEEEE
Confidence 479999999999999999999999999999999999999999999999999999999999886432 346789999
Q ss_pred cCcHHHHHHHHHHHHHHhhhc-CCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccch
Q 003881 305 APTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (789)
Q Consensus 305 ~PtreLa~Qi~~~~~~~~~~~-~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~ 383 (789)
+||++|+.|+++.++++.... ++++..++|+.....+...+..+++|+|+||++|.+.+......+.++++|||||||+
T Consensus 78 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~ 157 (206)
T 1vec_A 78 VPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 157 (206)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH
T ss_pred eCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH
Confidence 999999999999999998776 7899999999988887777778899999999999999988878889999999999999
Q ss_pred hccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEE
Q 003881 384 MFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRV 431 (789)
Q Consensus 384 m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i 431 (789)
+.+.+|...+..++..+++.+|+++||||+|+.+..+++.++.+|..+
T Consensus 158 ~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 158 LLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred hHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 999999999999999999899999999999999999999999999765
No 64
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=1.9e-33 Score=288.65 Aligned_cols=212 Identities=33% Similarity=0.561 Sum_probs=185.0
Q ss_pred CCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccC
Q 003881 218 FDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEE 297 (789)
Q Consensus 218 ~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~ 297 (789)
...|+++.+|+++++++.+++.|.+.||..|+|+|.++++.++++++++++++||+|||++|++|++.++... ..
T Consensus 7 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~-----~~ 81 (224)
T 1qde_A 7 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VK 81 (224)
T ss_dssp BSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----CC
T ss_pred cccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc-----CC
Confidence 4567889999999999999999999999999999999999999999999999999999999999999887443 34
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEE
Q 003881 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLV 377 (789)
Q Consensus 298 gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lV 377 (789)
++++||++||++|+.|+++.+++++...++++..++|+.....+...+.. ++|+|+||++|.+.+......+.++++||
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iV 160 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFI 160 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEE
Confidence 67899999999999999999999988888999999998877666555444 99999999999999988888889999999
Q ss_pred EeccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeecc
Q 003881 378 LDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGE 435 (789)
Q Consensus 378 vDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~ 435 (789)
|||||++.+++|...+..++..+++.+|+++||||+++.+..+++.++.+|..+.+..
T Consensus 161 iDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 161 LDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp EETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred EcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 9999999999999999999999999999999999999999999999999998887643
No 65
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.2e-33 Score=335.60 Aligned_cols=374 Identities=17% Similarity=0.244 Sum_probs=251.2
Q ss_pred ccccccCChhhcCCCHHHHHHHHHHcCcee---ccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHH--
Q 003881 186 NKDFYQDSASISGMSEQDVMEYKKSLAIRV---SGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIIL-- 260 (789)
Q Consensus 186 ~k~fy~~~~~i~~~s~~~~~~~r~~~~i~v---~~~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il-- 260 (789)
....|.....+..+..+.+..+........ .....+.....|..+...+... .-.+|+|||.+++.+++
T Consensus 178 ~~~tWe~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~Lr~yQ~egv~~l~~~ 251 (800)
T 3mwy_W 178 DEATWENATDIVKLAPEQVKHFQNRENSKILPQYSSNYTSQRPRFEKLSVQPPFI------KGGELRDFQLTGINWMAFL 251 (800)
T ss_dssp TTCBCCBHHHHTTTCHHHHHHHHHTTTCTTCSTTCCCCCSCCCCCCCCSSCCTTC------CSSCCCTHHHHHHHHHHHH
T ss_pred ccccccchhhhhhhhHHHHHHHHHhhhcccCCcchhcccccCCcccccccCCCcc------CCCCcCHHHHHHHHHHHHH
Confidence 344555555566677777887776432211 1111222223344333222111 12479999999999887
Q ss_pred --cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCCh
Q 003881 261 --SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSK 338 (789)
Q Consensus 261 --~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~ 338 (789)
.++++|++++||+|||++++..+...+... .....+||||| ..|+.||.+++.+|+. ++++.+++|+...
T Consensus 252 ~~~~~~~ILademGlGKT~~ai~~i~~l~~~~-----~~~~~~LIV~P-~sll~qW~~E~~~~~p--~~~v~~~~g~~~~ 323 (800)
T 3mwy_W 252 WSKGDNGILADEMGLGKTVQTVAFISWLIFAR-----RQNGPHIIVVP-LSTMPAWLDTFEKWAP--DLNCICYMGNQKS 323 (800)
T ss_dssp HTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH-----SCCSCEEEECC-TTTHHHHHHHHHHHST--TCCEEECCCSSHH
T ss_pred hhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc-----CCCCCEEEEEC-chHHHHHHHHHHHHCC--CceEEEEeCCHHH
Confidence 789999999999999998655543332221 22344799999 5788899999999975 6777777776655
Q ss_pred HHHHHHHh------------cCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcCCCceE
Q 003881 339 LDQFKELK------------AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 406 (789)
Q Consensus 339 ~~~~~~l~------------~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ 406 (789)
...+.... ..++|+|+||+.+..... .+....+.+|||||||++.+. ...+...+..++ ....
T Consensus 324 r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~--~l~~~~w~~vIvDEaH~lkn~--~s~~~~~l~~l~-~~~r 398 (800)
T 3mwy_W 324 RDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRA--ELGSIKWQFMAVDEAHRLKNA--ESSLYESLNSFK-VANR 398 (800)
T ss_dssp HHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHH--HHHTSEEEEEEETTGGGGCCS--SSHHHHHHTTSE-EEEE
T ss_pred HHHHHHHHhhccccccccccccCCEEEecHHHHHhhHH--HHhcCCcceeehhhhhhhcCc--hhHHHHHHHHhh-hccE
Confidence 54443321 247899999999976432 233347899999999999764 335556666664 4456
Q ss_pred EEEeccCc----HHHHHHHHHHhCC-----------------------------CeEEeecc--ccCcccceeEEEEecC
Q 003881 407 LLFSATMP----RKVEKLAREILSD-----------------------------PVRVTVGE--VGMANEDITQVVHVIP 451 (789)
Q Consensus 407 ll~SAT~~----~~i~~l~~~~l~~-----------------------------p~~i~i~~--~~~~~~~i~q~~~~~~ 451 (789)
+++|||+- .++..++..+... |..+.... .....+.....+..+.
T Consensus 399 l~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ 478 (800)
T 3mwy_W 399 MLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVE 478 (800)
T ss_dssp EEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEEC
T ss_pred EEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeC
Confidence 88999972 2222222222111 11110000 0000011111111111
Q ss_pred --------------------------------------------------------------------------CCcccH
Q 003881 452 --------------------------------------------------------------------------SDAEKL 457 (789)
Q Consensus 452 --------------------------------------------------------------------------~~~~k~ 457 (789)
....|+
T Consensus 479 ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~ 558 (800)
T 3mwy_W 479 LSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKM 558 (800)
T ss_dssp CCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHH
Confidence 012344
Q ss_pred HHHHHhcCCCC-CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCc---ceEEeehhhhcc
Q 003881 458 PWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVY---HVLIATDVAARG 533 (789)
Q Consensus 458 ~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~---~VLVaT~v~~rG 533 (789)
..|..+|.... .+.++||||+....++.|..+|...++.+..|||.++..+|..+++.|+++.. .+||+|.+++.|
T Consensus 559 ~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~G 638 (800)
T 3mwy_W 559 VLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLG 638 (800)
T ss_dssp HHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTT
T ss_pred HHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCC
Confidence 55555555433 34599999999999999999999999999999999999999999999998654 589999999999
Q ss_pred CCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCC-CcEEEEEEccc
Q 003881 534 LDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDK-DGTAYTLVTQK 578 (789)
Q Consensus 534 lDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k-~G~~i~lv~~~ 578 (789)
||++.+++||+||+|||+..++||+||++|.|++ ...+|.|++..
T Consensus 639 lNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 639 INLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp CCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred CCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 9999999999999999999999999999999954 46677788765
No 66
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=8.4e-33 Score=279.95 Aligned_cols=204 Identities=41% Similarity=0.685 Sum_probs=187.6
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEc
Q 003881 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305 (789)
Q Consensus 226 sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~ 305 (789)
+|++++|++.+++.|.+.||..|+|+|.++++.++++++++++++||+|||++|++|++.++..... ...++++||++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~--~~~~~~~lil~ 79 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQE--RGRKPRALVLT 79 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC--TTCCCSEEEEC
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccc--cCCCCcEEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999998764321 23468899999
Q ss_pred CcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhc
Q 003881 306 PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (789)
Q Consensus 306 PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~ 385 (789)
||++|+.|+++.+++++. .+++..++|+.....+...+..+++|+|+||++|.+++......+..+++|||||||++.
T Consensus 80 P~~~L~~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~ 157 (207)
T 2gxq_A 80 PTRELALQVASELTAVAP--HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEML 157 (207)
T ss_dssp SSHHHHHHHHHHHHHHCT--TSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHH
T ss_pred CCHHHHHHHHHHHHHHhh--cceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhh
Confidence 999999999999999976 378889999998888878888899999999999999998888889999999999999999
Q ss_pred cCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEee
Q 003881 386 DLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTV 433 (789)
Q Consensus 386 ~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i 433 (789)
+++|...+..++..+++.+|+++||||+++.+..+++.++.+|..+.+
T Consensus 158 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 158 SMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred ccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 999999999999999999999999999999999999999999988765
No 67
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=7.1e-34 Score=349.63 Aligned_cols=317 Identities=19% Similarity=0.204 Sum_probs=219.4
Q ss_pred CCCcHHHHHHHHHHHcC--CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhh
Q 003881 246 EKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~g--rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~ 323 (789)
..|+|+|.+++.+++.. .++|++++||+|||++++..+...+.. +...++|||||+ .|+.||..++.+++
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~------g~~~rvLIVvP~-sLl~Qw~~E~~~~f- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS------GAAERVLIIVPE-TLQHQWLVEMLRRF- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT------SSCCCEEEECCT-TTHHHHHHHHHHHS-
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh------CCCCeEEEEeCH-HHHHHHHHHHHHHh-
Confidence 57999999999998864 589999999999999987766555432 223469999999 99999999997765
Q ss_pred hcCCeEEEEECCCChHHHHH---HHhcCCcEEEeChHHHHHHHhh-cccccCceeEEEEeccchhccCCChH-HHHHHHh
Q 003881 324 SHGIRVSAVYGGMSKLDQFK---ELKAGCEIVIATPGRLIDMLKM-KALTMSRVTYLVLDEADRMFDLGFEP-QIRSIVG 398 (789)
Q Consensus 324 ~~~i~v~~~~gg~~~~~~~~---~l~~~~dIiV~Tp~~L~~~l~~-~~~~l~~i~~lVvDEah~m~~~~f~~-~i~~il~ 398 (789)
++.+.++.++... .... ......+|+|+|++.|...... ..+....+++|||||||++.+..... ....++.
T Consensus 224 --~l~v~v~~~~~~~-~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~ 300 (968)
T 3dmq_A 224 --NLRFALFDDERYA-EAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIE 300 (968)
T ss_dssp --CCCCEECCHHHHH-HHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHH
T ss_pred --CCCEEEEccchhh-hhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHH
Confidence 5666655443211 1111 1112479999999988643211 22345679999999999998765331 1122232
Q ss_pred hc-CCCceEEEEeccCcH-H---HHHHHHH----------------------------HhCC-C----------------
Q 003881 399 QI-RPDRQTLLFSATMPR-K---VEKLARE----------------------------ILSD-P---------------- 428 (789)
Q Consensus 399 ~l-~~~~q~ll~SAT~~~-~---i~~l~~~----------------------------~l~~-p---------------- 428 (789)
.+ ...++++++|||+.+ . +..++.. +... +
T Consensus 301 ~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~ 380 (968)
T 3dmq_A 301 QLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQ 380 (968)
T ss_dssp HHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTT
T ss_pred HHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcch
Confidence 22 345679999999742 1 1111110 0000 0
Q ss_pred -----------------------------------eEEeecc--c-cCcccceeEEEE----------------------
Q 003881 429 -----------------------------------VRVTVGE--V-GMANEDITQVVH---------------------- 448 (789)
Q Consensus 429 -----------------------------------~~i~i~~--~-~~~~~~i~q~~~---------------------- 448 (789)
+.+.... . ......+.....
T Consensus 381 ~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (968)
T 3dmq_A 381 DIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSA 460 (968)
T ss_dssp CSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSG
T ss_pred hhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhh
Confidence 0000000 0 000000000000
Q ss_pred ----------------------ecCCCcccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHH-cCCceeeccCCCC
Q 003881 449 ----------------------VIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQ-KGFKAAALHGDKD 505 (789)
Q Consensus 449 ----------------------~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~-~g~~v~~lhg~~~ 505 (789)
.......|..+|.+++.. ...+++||||+++..++.|+..|.. .++.+..+||+|+
T Consensus 461 ~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~ 539 (968)
T 3dmq_A 461 EDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS-HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMS 539 (968)
T ss_dssp GGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSC
T ss_pred HHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 011223467777777765 3567999999999999999999995 5999999999999
Q ss_pred HHHHHHHHHHhhcCC--cceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEE
Q 003881 506 QASRMEILQKFKSGV--YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLV 575 (789)
Q Consensus 506 ~~eR~~~l~~F~~G~--~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv 575 (789)
+.+|..+++.|++|+ ++|||||+++++|||+|++++||+||+|+++..|+||+||+||.|+ .+.+++++
T Consensus 540 ~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq-~~~v~v~~ 610 (968)
T 3dmq_A 540 IIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQ-AHDIQIHV 610 (968)
T ss_dssp TTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSS-CSCCEEEE
T ss_pred HHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCC-CceEEEEE
Confidence 999999999999998 9999999999999999999999999999999999999999999994 45444443
No 68
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1e-31 Score=317.84 Aligned_cols=324 Identities=17% Similarity=0.198 Sum_probs=223.0
Q ss_pred CCCcHHHHHHHHHHH---------cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHH
Q 003881 246 EKPTSIQCQALPIIL---------SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYL 316 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il---------~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~ 316 (789)
..|+|||.+++.+++ .++.+|++++||+|||++++..+. +++...........++|||||+ .|+.||.+
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~-~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~ 131 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIW-TLLKQSPDCKPEIDKVIVVSPS-SLVRNWYN 131 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHH-HHHHCCTTSSCSCSCEEEEECH-HHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHH-HHHHhCccccCCCCcEEEEecH-HHHHHHHH
Confidence 479999999999985 346799999999999998665554 4444322222233468999997 78899999
Q ss_pred HHHHHhhhcCCeEEEEECCCChHH--HHHHHhc------CCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCC
Q 003881 317 ETKKFAKSHGIRVSAVYGGMSKLD--QFKELKA------GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG 388 (789)
Q Consensus 317 ~~~~~~~~~~i~v~~~~gg~~~~~--~~~~l~~------~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~ 388 (789)
++.+|+.. .+.++.+++|..... ....... .++|+|+||+.|..... .+....+++|||||||++.+..
T Consensus 132 E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~ikn~~ 208 (644)
T 1z3i_X 132 EVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKNSD 208 (644)
T ss_dssp HHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCTTC
T ss_pred HHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceecCChh
Confidence 99999875 567777777654321 1222221 37899999999876442 3344578999999999998753
Q ss_pred ChHHHHHHHhhcCCCceEEEEeccCcHH-HHHH------------------HHHHhC-----------------------
Q 003881 389 FEPQIRSIVGQIRPDRQTLLFSATMPRK-VEKL------------------AREILS----------------------- 426 (789)
Q Consensus 389 f~~~i~~il~~l~~~~q~ll~SAT~~~~-i~~l------------------~~~~l~----------------------- 426 (789)
......+..++ ....+++|||+-.+ +.++ ...|..
T Consensus 209 --~~~~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~ 285 (644)
T 1z3i_X 209 --NQTYLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQ 285 (644)
T ss_dssp --HHHHHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHH
T ss_pred --hHHHHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHH
Confidence 34455555564 45679999997321 1100 000000
Q ss_pred ------CCeEEeecc--cc-CcccceeEEEEecC----------------------------------------------
Q 003881 427 ------DPVRVTVGE--VG-MANEDITQVVHVIP---------------------------------------------- 451 (789)
Q Consensus 427 ------~p~~i~i~~--~~-~~~~~i~q~~~~~~---------------------------------------------- 451 (789)
.|..+.-.. .. ..+..+.+. ..+.
T Consensus 286 ~L~~~l~~~~lRR~k~~v~~~LP~k~~~~-v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~ 364 (644)
T 1z3i_X 286 ELISIVNRCLIRRTSDILSKYLPVKIEQV-VCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPA 364 (644)
T ss_dssp HHHHHHHHHEECCCGGGGGGTSCCEEEEE-EEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTH
T ss_pred HHHHHHHHHHHHhhHHhHhhhCCCceEEE-EEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHH
Confidence 000000000 00 001111111 1110
Q ss_pred -------------------------------CCcccHHHHHHhcCCC--CCCCCEEEEecccccHHHHHHHHHHcCCcee
Q 003881 452 -------------------------------SDAEKLPWLLEKLPGM--IDDGDVLVFASKKTTVDEIESQLAQKGFKAA 498 (789)
Q Consensus 452 -------------------------------~~~~k~~~L~~~L~~~--~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~ 498 (789)
....|...|..++... ....++||||++...++.|...|...++.+.
T Consensus 365 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~ 444 (644)
T 1z3i_X 365 LIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYV 444 (644)
T ss_dssp HHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEE
Confidence 0012222232222221 1356999999999999999999999999999
Q ss_pred eccCCCCHHHHHHHHHHhhcCCcc---eEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCC-CcEEEEE
Q 003881 499 ALHGDKDQASRMEILQKFKSGVYH---VLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDK-DGTAYTL 574 (789)
Q Consensus 499 ~lhg~~~~~eR~~~l~~F~~G~~~---VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k-~G~~i~l 574 (789)
.+||++++.+|..+++.|+++... +||+|+++++|||++++++||+||+|||+..|.|++||++|.|++ ...+|.|
T Consensus 445 ~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~l 524 (644)
T 1z3i_X 445 RLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRL 524 (644)
T ss_dssp EECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEE
T ss_pred EEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEE
Confidence 999999999999999999998654 899999999999999999999999999999999999999999954 4567778
Q ss_pred Eccc
Q 003881 575 VTQK 578 (789)
Q Consensus 575 v~~~ 578 (789)
++..
T Consensus 525 v~~~ 528 (644)
T 1z3i_X 525 LSTG 528 (644)
T ss_dssp EETT
T ss_pred EECC
Confidence 8765
No 69
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=2e-32 Score=288.53 Aligned_cols=204 Identities=36% Similarity=0.572 Sum_probs=182.8
Q ss_pred CCcccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEE
Q 003881 225 KTFEDCG--FSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (789)
Q Consensus 225 ~sf~~~~--l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vL 302 (789)
.+|++++ +++.+++.|...||.+|+|+|.++++.++.++|+|++++||+|||++|++|++..+...+.. ...++++|
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~-~~~~~~~l 130 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM-PRNGTGVL 130 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC-GGGCCCEE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc-ccCCceEE
Confidence 3466665 99999999999999999999999999999999999999999999999999999998764322 23477899
Q ss_pred EEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhc-ccccCceeEEEEecc
Q 003881 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK-ALTMSRVTYLVLDEA 381 (789)
Q Consensus 303 Il~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~-~~~l~~i~~lVvDEa 381 (789)
||+||++||.|+++.+++++...++.+..++|+.....+...+..+++|+|+||++|.+++... .+.+.++.+||||||
T Consensus 131 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEa 210 (262)
T 3ly5_A 131 ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEA 210 (262)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSH
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcCh
Confidence 9999999999999999999988899999999999988888888889999999999999988764 367889999999999
Q ss_pred chhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCe
Q 003881 382 DRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPV 429 (789)
Q Consensus 382 h~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~ 429 (789)
|+|.+++|...+..++..++..+|+|+||||+++.+..+++.++.++.
T Consensus 211 h~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 211 DRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp HHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred HHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999987653
No 70
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.6e-32 Score=281.09 Aligned_cols=208 Identities=30% Similarity=0.536 Sum_probs=183.7
Q ss_pred CCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCC
Q 003881 220 VPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGP 299 (789)
Q Consensus 220 ~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp 299 (789)
.+....+|++++|++.+++.|.+.||..|+|+|.++++.++++++++++++||+|||++|++|++.++... ..++
T Consensus 9 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~-----~~~~ 83 (220)
T 1t6n_A 9 VSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQV 83 (220)
T ss_dssp -----CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC-----TTCC
T ss_pred ccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc-----CCCE
Confidence 34455679999999999999999999999999999999999999999999999999999999999876432 2356
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhhhc-CCeEEEEECCCChHHHHHHHhc-CCcEEEeChHHHHHHHhhcccccCceeEEE
Q 003881 300 IGVICAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLV 377 (789)
Q Consensus 300 ~vLIl~PtreLa~Qi~~~~~~~~~~~-~i~v~~~~gg~~~~~~~~~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lV 377 (789)
++|||+||++|+.||+++++++.... ++++..++|+.....+...+.. .++|+|+||++|..++......+..+++||
T Consensus 84 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lV 163 (220)
T 1t6n_A 84 SVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFI 163 (220)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEE
Confidence 89999999999999999999998765 7899999999888777766665 469999999999999988878899999999
Q ss_pred Eeccchhcc-CCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEe
Q 003881 378 LDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVT 432 (789)
Q Consensus 378 vDEah~m~~-~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~ 432 (789)
|||||++.+ .+|...+..++..++..+|+++||||+++.+..+++.++.+|..+.
T Consensus 164 iDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 164 LDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp EESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred EcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 999999987 4788888899998888999999999999999999999999998765
No 71
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=5.2e-33 Score=327.05 Aligned_cols=283 Identities=20% Similarity=0.242 Sum_probs=208.6
Q ss_pred HHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECC
Q 003881 256 LPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGG 335 (789)
Q Consensus 256 i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg 335 (789)
....++++++|++||||||||+. ++..+... +.+||++|||+||.|+++.+++. ++.+..++|+
T Consensus 149 ~ar~l~rk~vlv~apTGSGKT~~----al~~l~~~--------~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~ 212 (677)
T 3rc3_A 149 DARAMQRKIIFHSGPTNSGKTYH----AIQKYFSA--------KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGE 212 (677)
T ss_dssp HHHTSCCEEEEEECCTTSSHHHH----HHHHHHHS--------SSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSS
T ss_pred HHHhcCCCEEEEEcCCCCCHHHH----HHHHHHhc--------CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECC
Confidence 34457889999999999999983 34444332 23599999999999999998775 7889999987
Q ss_pred CChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcC-CCceEEEEeccCc
Q 003881 336 MSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR-PDRQTLLFSATMP 414 (789)
Q Consensus 336 ~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~-~~~q~ll~SAT~~ 414 (789)
...... .-....+++++|++.+. .+..+++|||||||+|.+.+|...+..++..++ ...|++++|||.+
T Consensus 213 ~~~iv~--TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~ 282 (677)
T 3rc3_A 213 ERVTVQ--PNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAID 282 (677)
T ss_dssp CEECCS--TTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHH
T ss_pred eeEEec--CCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHH
Confidence 654100 00012567777763321 346789999999999999999999999988887 7789999999953
Q ss_pred HHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcC
Q 003881 415 RKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKG 494 (789)
Q Consensus 415 ~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g 494 (789)
.+..++... .....+..... .... ..... .+ ..+... ..+.||||+++..++.++..|.+.+
T Consensus 283 -~i~~l~~~~-~~~~~v~~~~r---~~~l----~~~~~---~l----~~l~~~--~~g~iIf~~s~~~ie~la~~L~~~g 344 (677)
T 3rc3_A 283 -LVMELMYTT-GEEVEVRDYKR---LTPI----SVLDH---AL----ESLDNL--RPGDCIVCFSKNDIYSVSRQIEIRG 344 (677)
T ss_dssp -HHHHHHHHH-TCCEEEEECCC---SSCE----EECSS---CC----CSGGGC--CTTEEEECSSHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHhc-CCceEEEEeee---cchH----HHHHH---HH----HHHHhc--CCCCEEEEcCHHHHHHHHHHHHhcC
Confidence 445555443 33333321100 0000 00000 00 111111 3456899999999999999999999
Q ss_pred CceeeccCCCCHHHHHHHHHHhhc--CCcceEEeehhhhccCCCCCccEEEEEcC--------------CCCHHHHHHHH
Q 003881 495 FKAAALHGDKDQASRMEILQKFKS--GVYHVLIATDVAARGLDIKSIKSVVNFDI--------------ARDMDMHVHRI 558 (789)
Q Consensus 495 ~~v~~lhg~~~~~eR~~~l~~F~~--G~~~VLVaT~v~~rGlDI~~v~~VI~~d~--------------p~s~~~yiQri 558 (789)
+.+..+||+|++.+|..+++.|++ |.++|||||+++++|||| ++++||++++ |.+..+|+||+
T Consensus 345 ~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~ 423 (677)
T 3rc3_A 345 LESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIA 423 (677)
T ss_dssp CCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHH
T ss_pred CCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHh
Confidence 999999999999999999999999 899999999999999999 9999999999 78999999999
Q ss_pred hhcCCCCCC--CcEEEEEEccccHHHHH
Q 003881 559 GRTGRAGDK--DGTAYTLVTQKEARFAG 584 (789)
Q Consensus 559 GR~gR~G~k--~G~~i~lv~~~d~~~~~ 584 (789)
||+||.|.. .|.|+.+. ..+...+.
T Consensus 424 GRAGR~g~~g~~G~v~~l~-~~d~~~~~ 450 (677)
T 3rc3_A 424 GRAGRFSSRFKEGEVTTMN-HEDLSLLK 450 (677)
T ss_dssp TTBTCTTSSCSSEEEEESS-TTHHHHHH
T ss_pred cCCCCCCCCCCCEEEEEEe-cchHHHHH
Confidence 999999943 46666554 44433333
No 72
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.97 E-value=2e-30 Score=297.12 Aligned_cols=318 Identities=20% Similarity=0.238 Sum_probs=234.8
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003881 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~ 325 (789)
-.|+++|..+.-.+..|+ |..+.||+|||+++.+|++...+. |..+.||+||+.||.|-.+++..+...+
T Consensus 74 ~r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~--------G~~vhVvT~ndyLA~rdae~m~~l~~~L 143 (822)
T 3jux_A 74 MRPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI--------GKGVHLVTVNDYLARRDALWMGPVYLFL 143 (822)
T ss_dssp CCCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc--------CCceEEEeccHHHHHhHHHHHHHHHHHh
Confidence 368999999998888887 889999999999999999866543 5569999999999999999999999999
Q ss_pred CCeEEEEECC--------------------------------------------------CChHHHHHHHhcCCcEEEeC
Q 003881 326 GIRVSAVYGG--------------------------------------------------MSKLDQFKELKAGCEIVIAT 355 (789)
Q Consensus 326 ~i~v~~~~gg--------------------------------------------------~~~~~~~~~l~~~~dIiV~T 355 (789)
|++|.+++.. ....+ .+... .|||+.+|
T Consensus 144 glsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e-rr~aY-~~DItYgT 221 (822)
T 3jux_A 144 GLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEIT-RKEAY-LCDVTYGT 221 (822)
T ss_dssp TCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCC-HHHHH-HSSEEEEE
T ss_pred CCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHH-HHHHh-cCCCEEcc
Confidence 9999999982 11111 11112 38999999
Q ss_pred hHHHH-HHHhhc------ccccCceeEEEEeccchhc-cC--------------------------------CC------
Q 003881 356 PGRLI-DMLKMK------ALTMSRVTYLVLDEADRMF-DL--------------------------------GF------ 389 (789)
Q Consensus 356 p~~L~-~~l~~~------~~~l~~i~~lVvDEah~m~-~~--------------------------------~f------ 389 (789)
..-|- +.|..+ ......+.+.||||+|.|+ |. .|
T Consensus 222 n~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~ 301 (822)
T 3jux_A 222 NNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKA 301 (822)
T ss_dssp HHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSS
T ss_pred CcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEccc
Confidence 98763 444322 2235678999999999752 10 00
Q ss_pred ------h---HHHHHH---------------------Hhh---cCC----------------------------------
Q 003881 390 ------E---PQIRSI---------------------VGQ---IRP---------------------------------- 402 (789)
Q Consensus 390 ------~---~~i~~i---------------------l~~---l~~---------------------------------- 402 (789)
. ..+..+ +.. +..
T Consensus 302 ~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQa 381 (822)
T 3jux_A 302 RTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQA 381 (822)
T ss_dssp SCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHH
T ss_pred CeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHH
Confidence 0 000000 000 000
Q ss_pred ---------------------------CceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcc
Q 003881 403 ---------------------------DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAE 455 (789)
Q Consensus 403 ---------------------------~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~ 455 (789)
-.++.+||+|+.....++...|..+ .+.+ ........+.+...+......
T Consensus 382 iEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~I-Ptnkp~~R~d~~d~vy~t~~e 458 (822)
T 3jux_A 382 IEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVI-PTHKPMIRKDHDDLVFRTQKE 458 (822)
T ss_dssp HHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEEC-CCSSCCCCEECCCEEESSHHH
T ss_pred HHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEE-CCCCCcceeecCcEEEecHHH
Confidence 0368999999987766665555322 2333 222222233332233445677
Q ss_pred cHHHHHHhcCCCC-CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccC
Q 003881 456 KLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGL 534 (789)
Q Consensus 456 k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGl 534 (789)
|+..++..+.... ...++||||+++..++.|+..|.+.|+++.+|||++.+.++..+...|+.| .|||||++++||+
T Consensus 459 K~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGt 536 (822)
T 3jux_A 459 KYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGT 536 (822)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTC
T ss_pred HHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCc
Confidence 8888888887543 356899999999999999999999999999999996555555555556555 6999999999999
Q ss_pred CCC--------CccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHH
Q 003881 535 DIK--------SIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581 (789)
Q Consensus 535 DI~--------~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~ 581 (789)
||+ +..+||+|+.|.+...|+||+||+||.| .+|.+++|++..|.-
T Consensus 537 DI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG-~~G~a~~fvsleD~l 590 (822)
T 3jux_A 537 DIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQG-DPGESIFFLSLEDDL 590 (822)
T ss_dssp CCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSS-CCCEEEEEEETTSHH
T ss_pred CccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCC-CCeeEEEEechhHHH
Confidence 998 6779999999999999999999999999 689999999998843
No 73
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.96 E-value=1.6e-29 Score=309.22 Aligned_cols=313 Identities=13% Similarity=0.090 Sum_probs=214.0
Q ss_pred CCCcHHHHHHHHHHHc--------------CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHH
Q 003881 246 EKPTSIQCQALPIILS--------------GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~--------------grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa 311 (789)
..|+|+|.+|++.++. +++++++++||||||+++ ++++..+... ...+++|||||+++|+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~-----~~~~rvLvlvpr~eL~ 343 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL-----DFIDKVFFVVDRKDLD 343 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC-----TTCCEEEEEECGGGCC
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc-----CCCceEEEEeCcHHHH
Confidence 3599999999999875 378999999999999996 6666444221 2346899999999999
Q ss_pred HHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHh-cCCcEEEeChHHHHHHHhhcc--cccCceeEEEEeccchhccCC
Q 003881 312 HQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK-AGCEIVIATPGRLIDMLKMKA--LTMSRVTYLVLDEADRMFDLG 388 (789)
Q Consensus 312 ~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~-~~~dIiV~Tp~~L~~~l~~~~--~~l~~i~~lVvDEah~m~~~~ 388 (789)
.||.+++..+... .+.++.+.......+. .+++|+|+||++|..++.... ..+..+.+|||||||++..
T Consensus 344 ~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~-- 415 (1038)
T 2w00_A 344 YQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF-- 415 (1038)
T ss_dssp HHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH--
T ss_pred HHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc--
Confidence 9999999988642 2345555555555564 468999999999999876532 2456789999999999764
Q ss_pred ChHHHHHHHhhcCCCceEEEEeccCcHHHH----HHHHHHhCCCeEEeecc----ccCcccceeEEEEe-----------
Q 003881 389 FEPQIRSIVGQIRPDRQTLLFSATMPRKVE----KLAREILSDPVRVTVGE----VGMANEDITQVVHV----------- 449 (789)
Q Consensus 389 f~~~i~~il~~l~~~~q~ll~SAT~~~~i~----~l~~~~l~~p~~i~i~~----~~~~~~~i~q~~~~----------- 449 (789)
......++..++ ..++++||||+..... .....++++++..+... .+.. .++...+..
T Consensus 416 -~~~~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l-~p~~v~y~~v~~~~~~~~~e 492 (1038)
T 2w00_A 416 -GEAQKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKV-LKFKVDYNDVRPQFKSLETE 492 (1038)
T ss_dssp -HHHHHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSS-CCEEEEECCCCGGGHHHHTC
T ss_pred -hHHHHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCc-CCeEEEEEeccchhhhcccc
Confidence 233455555554 5899999999864321 12223333332211000 0000 001000000
Q ss_pred -------------cCCCcccHHHHH----HhcCCC-------CCCCCEEEEecccccHHHHHHHHHHcC-----------
Q 003881 450 -------------IPSDAEKLPWLL----EKLPGM-------IDDGDVLVFASKKTTVDEIESQLAQKG----------- 494 (789)
Q Consensus 450 -------------~~~~~~k~~~L~----~~L~~~-------~~~~kvLVF~~s~~~a~~l~~~L~~~g----------- 494 (789)
+-....+...+. ..+... ....++||||+++..|..+++.|.+.+
T Consensus 493 ~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~ 572 (1038)
T 2w00_A 493 TDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYK 572 (1038)
T ss_dssp CCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCC
T ss_pred ccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccc
Confidence 000111222222 221111 123579999999999999999997754
Q ss_pred -Cce-eeccCC----------C----------CH-----------------------------HHHHHHHHHhhcCCcce
Q 003881 495 -FKA-AALHGD----------K----------DQ-----------------------------ASRMEILQKFKSGVYHV 523 (789)
Q Consensus 495 -~~v-~~lhg~----------~----------~~-----------------------------~eR~~~l~~F~~G~~~V 523 (789)
+++ +++|++ + ++ ..|..++++|++|+++|
T Consensus 573 ~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~I 652 (1038)
T 2w00_A 573 PLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDL 652 (1038)
T ss_dssp CCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSE
T ss_pred cCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeE
Confidence 455 455643 2 22 24888999999999999
Q ss_pred EEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCC---CcEEEEEEc
Q 003881 524 LIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDK---DGTAYTLVT 576 (789)
Q Consensus 524 LVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k---~G~~i~lv~ 576 (789)
||+|+++.+|+|+|.+ +|+++|.|.....|+|++||++|.+.. .|.++.|+.
T Consensus 653 LIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 653 LIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp EEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred EEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 9999999999999999 788999999999999999999999832 366777665
No 74
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.95 E-value=1.7e-27 Score=238.68 Aligned_cols=180 Identities=36% Similarity=0.540 Sum_probs=147.8
Q ss_pred HHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeecc
Q 003881 422 REILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALH 501 (789)
Q Consensus 422 ~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lh 501 (789)
..|+.+|..+.++........|.|.+..+. ...|...|+++|... .+++||||+++..++.++..|...++.+..+|
T Consensus 9 ~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~-~~~K~~~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lh 85 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMGAASLDVIQEVEYVK-EEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIH 85 (191)
T ss_dssp -------------------CCSEEEEEECC-GGGHHHHHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred ccccCCCEEEEECCCCCCCcCceEEEEEcC-hHHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEe
Confidence 457888999998888888889999998875 468999999988864 46899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccc-cH
Q 003881 502 GDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK-EA 580 (789)
Q Consensus 502 g~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~-d~ 580 (789)
|+|++.+|..+++.|++|+++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.| +.|.+++|+++. +.
T Consensus 86 g~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g-~~g~~i~l~~~~~~~ 164 (191)
T 2p6n_A 86 GGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSG-NTGIATTFINKACDE 164 (191)
T ss_dssp TTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC----CCEEEEEECTTSCH
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCC-CCcEEEEEEcCchhH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 679999999976 78
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHH
Q 003881 581 RFAGELVNSLIAAGQNVSMELMDLA 605 (789)
Q Consensus 581 ~~~~~lv~~l~~~~q~vp~~l~~~a 605 (789)
.++..|.+.|...++.+|++|.+++
T Consensus 165 ~~~~~l~~~l~~~~~~~p~~l~~~~ 189 (191)
T 2p6n_A 165 SVLMDLKALLLEAKQKVPPVLQVLH 189 (191)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHSTT
T ss_pred HHHHHHHHHHHHccCcCCHHHHhhc
Confidence 8999999999999999999987654
No 75
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.95 E-value=4.1e-26 Score=265.93 Aligned_cols=130 Identities=19% Similarity=0.253 Sum_probs=113.9
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHh
Q 003881 243 QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (789)
Q Consensus 243 ~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~ 322 (789)
.|+ .|+++|..++|.+++|+ |+.+.||+|||++|++|++.+.+. +..++||+||++||.|+++++..++
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~--------G~qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT--------GKGVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT--------CSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh--------CCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 588 99999999999999998 999999999999999999765532 4569999999999999999999999
Q ss_pred hhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHH-HHHHhhcc------cccC---ceeEEEEeccchhc
Q 003881 323 KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMKA------LTMS---RVTYLVLDEADRMF 385 (789)
Q Consensus 323 ~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L-~~~l~~~~------~~l~---~i~~lVvDEah~m~ 385 (789)
..+++++.+++||.+.. .+....++||+|+||++| ++++..+. +.+. .+.++||||||.|+
T Consensus 145 ~~lGLsv~~i~Gg~~~~--~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 145 RGLGLSVGVIQHASTPA--ERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HTTTCCEEECCTTCCHH--HHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HhcCCeEEEEeCCCCHH--HHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 99999999999998753 344455799999999999 88887653 4577 89999999999986
No 76
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.95 E-value=9e-27 Score=275.55 Aligned_cols=176 Identities=20% Similarity=0.291 Sum_probs=135.1
Q ss_pred CCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHHHHHhcCCCC-CCCCEEEEeccc
Q 003881 402 PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKK 480 (789)
Q Consensus 402 ~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~ 480 (789)
..+|+++||||+++..... ........+........ . +. +.....+...|+..|.... ...++||||+++
T Consensus 379 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~p-~---i~-v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 449 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH----SGRVVEQIIRPTGLLDP-L---VR-VKPTENQILDLMEGIRERAARGERTLVTVLTV 449 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH----CSEEEEECSCTTCCCCC-E---EE-EECSTTHHHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred hcCCEEEEecCCCHHHHHh----hhCeeeeeeccCCCCCC-e---EE-EecccchHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 4679999999998653211 11111111111111111 1 11 1223345566656555433 456999999999
Q ss_pred ccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEcC-----CCCHHHHH
Q 003881 481 TTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDI-----ARDMDMHV 555 (789)
Q Consensus 481 ~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~-----p~s~~~yi 555 (789)
..++.|++.|...++.+..+||++++.+|..+++.|+.|+++|||||+++++|+|+|++++||++|. |.+...|+
T Consensus 450 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~i 529 (664)
T 1c4o_A 450 RMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 529 (664)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHH
T ss_pred HHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 89999999
Q ss_pred HHHhhcCCCCCCCcEEEEEEccccHHHHHHHHH
Q 003881 556 HRIGRTGRAGDKDGTAYTLVTQKEARFAGELVN 588 (789)
Q Consensus 556 QriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~ 588 (789)
||+||+||.+ .|.|++|++..+..+...+.+
T Consensus 530 Qr~GRagR~~--~G~~i~~~~~~~~~~~~~i~~ 560 (664)
T 1c4o_A 530 QTIGRAARNA--RGEVWLYADRVSEAMQRAIEE 560 (664)
T ss_dssp HHHGGGTTST--TCEEEEECSSCCHHHHHHHHH
T ss_pred HHHCccCcCC--CCEEEEEEcCCCHHHHHHHHH
Confidence 9999999986 699999999887766555543
No 77
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.94 E-value=1.9e-26 Score=229.83 Aligned_cols=169 Identities=38% Similarity=0.618 Sum_probs=141.6
Q ss_pred cCcccceeEEEEecCCCcccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHh
Q 003881 437 GMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKF 516 (789)
Q Consensus 437 ~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F 516 (789)
.....+|.|.+..++ ...|...|.++|.......++||||+++..++.++..|...++.+..+||+|++.+|..+++.|
T Consensus 14 ~~~~~~i~q~~~~v~-~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f 92 (185)
T 2jgn_A 14 GSTSENITQKVVWVE-ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQF 92 (185)
T ss_dssp --CCTTEEEEEEECC-GGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHH
T ss_pred CCCCCCceEEEEEeC-cHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHH
Confidence 345678899988875 4678899988887755567999999999999999999999999999999999999999999999
Q ss_pred hcCCcceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHHHHHHcCCC
Q 003881 517 KSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQN 596 (789)
Q Consensus 517 ~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~l~~~~q~ 596 (789)
++|.++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.| +.|.|++|+++.+...+..+.+.+....+.
T Consensus 93 ~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g-~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 171 (185)
T 2jgn_A 93 RSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVG-NLGLATSFFNERNINITKDLLDLLVEAKQE 171 (185)
T ss_dssp HHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTT-SCEEEEEEECGGGGGGHHHHHHHHHHTTCC
T ss_pred HcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCC-CCcEEEEEEchhhHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999999999999999999 679999999999999999999999999999
Q ss_pred ccHHHHHHHHh
Q 003881 597 VSMELMDLAMK 607 (789)
Q Consensus 597 vp~~l~~~a~~ 607 (789)
+|.+|.+++..
T Consensus 172 ~~~~l~~~a~~ 182 (185)
T 2jgn_A 172 VPSWLENMAYE 182 (185)
T ss_dssp CCHHHHHHHC-
T ss_pred CCHHHHHHHHH
Confidence 99999998763
No 78
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.94 E-value=1.4e-25 Score=265.23 Aligned_cols=175 Identities=20% Similarity=0.312 Sum_probs=135.2
Q ss_pred CCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEecCCCcccHHHHHHhcCCCC-CCCCEEEEeccc
Q 003881 402 PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKK 480 (789)
Q Consensus 402 ~~~q~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~ 480 (789)
..+|+++||||+++..... ........+........ . +. +.....+...|+..|.... ...++||||+++
T Consensus 385 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~p-~---i~-v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 455 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH----TDEMVEQIIRPTGLLDP-L---ID-VRPIEGQIDDLIGEIQARIERNERVLVTTLTK 455 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH----CSSCEEECCCTTCCCCC-E---EE-EECSTTHHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred cCCCEEEEecCCChhHHHh----hhCeeeeeecccCCCCC-e---EE-EecccchHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 4689999999997653221 12222222211111111 1 11 1222345556655555443 456999999999
Q ss_pred ccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEcC-----CCCHHHHH
Q 003881 481 TTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDI-----ARDMDMHV 555 (789)
Q Consensus 481 ~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~-----p~s~~~yi 555 (789)
..++.|+..|...++.+..+||++++.+|..+++.|+.|+++|||||+++++|+|+|++++||++|. |.+...|+
T Consensus 456 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~i 535 (661)
T 2d7d_A 456 KMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 535 (661)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 99999999
Q ss_pred HHHhhcCCCCCCCcEEEEEEccccHHHHHHHH
Q 003881 556 HRIGRTGRAGDKDGTAYTLVTQKEARFAGELV 587 (789)
Q Consensus 556 QriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv 587 (789)
||+||+||.+ .|.|++|+++.+..+...+.
T Consensus 536 Qr~GRagR~~--~G~~i~~~~~~~~~~~~~i~ 565 (661)
T 2d7d_A 536 QTIGRAARNA--EGRVIMYADKITKSMEIAIN 565 (661)
T ss_dssp HHHHTTTTST--TCEEEEECSSCCHHHHHHHH
T ss_pred HHhCcccCCC--CCEEEEEEeCCCHHHHHHHH
Confidence 9999999984 79999999988776555443
No 79
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.92 E-value=1.1e-24 Score=215.02 Aligned_cols=154 Identities=29% Similarity=0.480 Sum_probs=136.6
Q ss_pred cccceeEEEEecCCCcccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhc
Q 003881 439 ANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKS 518 (789)
Q Consensus 439 ~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~ 518 (789)
....|.|.+..++....|...|..++... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 45678899998877666999999988765 56799999999999999999999999999999999999999999999999
Q ss_pred CCcceEEeehhhhccCCCCCccEEEEEcCC------CCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHHHHHH
Q 003881 519 GVYHVLIATDVAARGLDIKSIKSVVNFDIA------RDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIA 592 (789)
Q Consensus 519 G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p------~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~l~~ 592 (789)
|.++|||||+++++|+|+|++++||+||+| .++..|+||+||+||.| +.|.+++|+++.+...+..+.+.+..
T Consensus 83 g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~i~~~~~~ 161 (175)
T 2rb4_A 83 GKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFG-KKGLAFNMIEVDELPSLMKIQDHFNS 161 (175)
T ss_dssp TSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC-----CCEEEEEEECGGGHHHHHHHHHHHTC
T ss_pred CCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCC-CCceEEEEEccchHHHHHHHHHHhcC
Confidence 999999999999999999999999999999 89999999999999999 67999999999998888887777644
Q ss_pred cC
Q 003881 593 AG 594 (789)
Q Consensus 593 ~~ 594 (789)
..
T Consensus 162 ~~ 163 (175)
T 2rb4_A 162 SI 163 (175)
T ss_dssp CC
T ss_pred cc
Confidence 33
No 80
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.92 E-value=1.7e-24 Score=211.21 Aligned_cols=150 Identities=33% Similarity=0.613 Sum_probs=136.8
Q ss_pred CcccceeEEEEecCCCcccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhh
Q 003881 438 MANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFK 517 (789)
Q Consensus 438 ~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~ 517 (789)
....++.|.+..+. ...|...|..+|... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|+
T Consensus 5 ~~~~~i~~~~~~~~-~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~ 82 (163)
T 2hjv_A 5 LTTRNIEHAVIQVR-EENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFK 82 (163)
T ss_dssp -CCCCEEEEEEECC-GGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred cCcccceEEEEECC-hHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 34566888888775 567888888887653 4579999999999999999999999999999999999999999999999
Q ss_pred cCCcceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHHHH
Q 003881 518 SGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSL 590 (789)
Q Consensus 518 ~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~l 590 (789)
+|.++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.| +.|.+++|+++.+..++..+.+.+
T Consensus 83 ~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g-~~g~~~~~~~~~~~~~~~~i~~~~ 154 (163)
T 2hjv_A 83 RGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAG-NKGKAISFVTAFEKRFLADIEEYI 154 (163)
T ss_dssp TTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTT-CCEEEEEEECGGGHHHHHHHHHHH
T ss_pred cCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCC-CCceEEEEecHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 679999999999999888887766
No 81
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.91 E-value=1.5e-24 Score=213.58 Aligned_cols=158 Identities=26% Similarity=0.426 Sum_probs=138.4
Q ss_pred cceeEEEEecCCCcccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCC
Q 003881 441 EDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGV 520 (789)
Q Consensus 441 ~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~ 520 (789)
..+.|.+..+. ...|...|..++... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|.
T Consensus 4 ~~i~q~~~~~~-~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 4 HGLQQYYVKLK-DNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp -CCEEEEEECC-GGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CCeEEEEEECC-hHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 46778877775 467888888888754 4579999999999999999999999999999999999999999999999999
Q ss_pred cceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccc-cHHHHHHHHHHHHHcCCCccH
Q 003881 521 YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK-EARFAGELVNSLIAAGQNVSM 599 (789)
Q Consensus 521 ~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~-d~~~~~~lv~~l~~~~q~vp~ 599 (789)
.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.| +.|.+++|+++. +...+..+.+.+......+|.
T Consensus 82 ~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g-~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (172)
T 1t5i_A 82 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFG-TKGLAITFVSDENDAKILNDVQDRFEVNISELPD 160 (172)
T ss_dssp CSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGG-CCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC-
T ss_pred CcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCC-CCcEEEEEEcChhHHHHHHHHHHHHhcchhhCCh
Confidence 999999999999999999999999999999999999999999999 679999999876 566777777777666666666
Q ss_pred HH
Q 003881 600 EL 601 (789)
Q Consensus 600 ~l 601 (789)
++
T Consensus 161 ~~ 162 (172)
T 1t5i_A 161 EI 162 (172)
T ss_dssp --
T ss_pred hh
Confidence 53
No 82
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.91 E-value=1e-24 Score=213.23 Aligned_cols=158 Identities=27% Similarity=0.480 Sum_probs=136.8
Q ss_pred cceeEEEEecCCCcccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCC
Q 003881 441 EDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGV 520 (789)
Q Consensus 441 ~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~ 520 (789)
..|.|.+..+.....|...|.+++... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 80 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS 80 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 357788888876555888888888764 5679999999999999999999999999999999999999999999999999
Q ss_pred cceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHHHHHHcCCCccHH
Q 003881 521 YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSME 600 (789)
Q Consensus 521 ~~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~l~~~~q~vp~~ 600 (789)
.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.| +.|.|++|+++.+...+..+.+.+....+.+|..
T Consensus 81 ~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (165)
T 1fuk_A 81 SRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFG-RKGVAINFVTNEDVGAMRELEKFYSTQIEELPSD 159 (165)
T ss_dssp CSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC------CEEEEEEETTTHHHHHHHHHHSSCCCEECCSC
T ss_pred CEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCC-CCceEEEEEcchHHHHHHHHHHHHccCccccCcc
Confidence 999999999999999999999999999999999999999999999 6899999999999988888887776655555543
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.89 E-value=3.9e-23 Score=210.48 Aligned_cols=140 Identities=36% Similarity=0.494 Sum_probs=127.5
Q ss_pred CCcccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhh
Q 003881 452 SDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAA 531 (789)
Q Consensus 452 ~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~ 531 (789)
....|+..|..++... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|.++|||||++++
T Consensus 14 ~~~~k~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~ 92 (212)
T 3eaq_A 14 PVRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAA 92 (212)
T ss_dssp CTTSHHHHHHHHHHHH-CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTT
T ss_pred CHHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhh
Confidence 4467888888887643 467999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHHHHHHc
Q 003881 532 RGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAA 593 (789)
Q Consensus 532 rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~l~~~ 593 (789)
+|+|||++++||+||+|+++..|+||+||+||.| +.|.|++|+++.+...+..+.+.+...
T Consensus 93 ~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g-~~g~~~~l~~~~~~~~~~~i~~~~~~~ 153 (212)
T 3eaq_A 93 RGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAG-RGGRVVLLYGPRERRDVEALERAVGRR 153 (212)
T ss_dssp CSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC---BEEEEEECGGGHHHHHHHHHHHSSC
T ss_pred cCCCCccCcEEEECCCCcCHHHHHHHhcccCCCC-CCCeEEEEEchhHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999 679999999999988888887766443
No 84
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.89 E-value=4.4e-23 Score=209.40 Aligned_cols=166 Identities=23% Similarity=0.203 Sum_probs=124.1
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHH-HHHHHHHHh
Q 003881 244 GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQ-IYLETKKFA 322 (789)
Q Consensus 244 g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Q-i~~~~~~~~ 322 (789)
....|+|+|.++++.++++++++++++||+|||++|+++++.++..... ...++++||++|+++|+.| |.+.+.++.
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH--TTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc--ccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 3468999999999999999999999999999999999999877644221 1235679999999999999 888888887
Q ss_pred hhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcc------cccCceeEEEEeccchhccCCChHHHHHH
Q 003881 323 KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKA------LTMSRVTYLVLDEADRMFDLGFEPQIRSI 396 (789)
Q Consensus 323 ~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~------~~l~~i~~lVvDEah~m~~~~f~~~i~~i 396 (789)
.. ++++..++|+.........+...++|+|+||+.|...+.... ..+..+++|||||||++...++...+...
T Consensus 108 ~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~ 186 (216)
T 3b6e_A 108 KK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRH 186 (216)
T ss_dssp TT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHH
T ss_pred cc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHH
Confidence 64 688888888876655555555679999999999999887643 56788999999999999887666665433
Q ss_pred H-hhc-------------CCCceEEEEecc
Q 003881 397 V-GQI-------------RPDRQTLLFSAT 412 (789)
Q Consensus 397 l-~~l-------------~~~~q~ll~SAT 412 (789)
+ ... .+..++|+||||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 187 YLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHhcccccccccccCCCCcceEEEeecC
Confidence 2 211 167899999998
No 85
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.88 E-value=2.2e-22 Score=215.06 Aligned_cols=147 Identities=34% Similarity=0.474 Sum_probs=128.8
Q ss_pred eeEEEEecCCCcccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcc
Q 003881 443 ITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYH 522 (789)
Q Consensus 443 i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~ 522 (789)
+.+.+..+. ...|+..|..++... ..+++||||+++..++.|+..|...++.+..+||+|++.+|..+++.|++|.++
T Consensus 3 v~~~~i~~~-~~~K~~~L~~ll~~~-~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~ 80 (300)
T 3i32_A 3 YEEEAVPAP-VRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR 80 (300)
T ss_dssp SEEEEEECC-SSSHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC
T ss_pred eEEEEEECC-HHHHHHHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce
Confidence 455555554 467888888887654 368999999999999999999999999999999999999999999999999999
Q ss_pred eEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHHHHHH
Q 003881 523 VLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIA 592 (789)
Q Consensus 523 VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~l~~ 592 (789)
|||||+++++|||||++++||+||+|+++..|+||+||+||.| +.|.|++|+++.+...+..+.+.+..
T Consensus 81 vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g-~~G~~i~l~~~~e~~~~~~ie~~~~~ 149 (300)
T 3i32_A 81 VLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAG-RGGRVVLLYGPRERRDVEALERAVGR 149 (300)
T ss_dssp EEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC------CEEEEEECSSTHHHHHHHHHHHTC
T ss_pred EEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCC-CCceEEEEeChHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999 67999999999999888888776644
No 86
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.79 E-value=3.6e-24 Score=210.35 Aligned_cols=149 Identities=34% Similarity=0.499 Sum_probs=133.5
Q ss_pred ceeEEEEecCCCcccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCc
Q 003881 442 DITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVY 521 (789)
Q Consensus 442 ~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~ 521 (789)
++.|.+..++....|...|..++... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|++
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQP-EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 81 (170)
Confidence 45666666655467888888877653 45699999999999999999999999999999999999999999999999999
Q ss_pred ceEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHHHHHHH
Q 003881 522 HVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIA 592 (789)
Q Consensus 522 ~VLVaT~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv~~l~~ 592 (789)
+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.| +.|.+++|++..+...+..+.+.+..
T Consensus 82 ~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g-~~g~~~~~~~~~~~~~~~~~~~~~~~ 151 (170)
T 2yjt_D 82 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAG-RKGTAISLVEAHDHLLLGKVGRYIEE 151 (170)
Confidence 99999999999999999999999999999999999999999999 67999999999988887777766543
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.87 E-value=1.3e-21 Score=226.72 Aligned_cols=298 Identities=18% Similarity=0.230 Sum_probs=168.4
Q ss_pred CCCCCcHHHHHHHHH----HHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHH
Q 003881 244 GYEKPTSIQCQALPI----ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETK 319 (789)
Q Consensus 244 g~~~ptpiQ~~~i~~----il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~ 319 (789)
|| .|+|+|.+++.. +..++++++.++||+|||++|++|++.+ ++++||++||++|+.|+.+++.
T Consensus 5 ~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-----------~~~~~~~~~t~~l~~q~~~~~~ 72 (540)
T 2vl7_A 5 KL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-----------KKKVLIFTRTHSQLDSIYKNAK 72 (540)
T ss_dssp -----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-----------TCEEEEEESCHHHHHHHHHHHG
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-----------CCcEEEEcCCHHHHHHHHHHHH
Confidence 56 899999998654 5688999999999999999999998764 4679999999999999998887
Q ss_pred HHhhhcCCeEEEEECCCCh--------------------------------HHHH---------------HHHhcCCcEE
Q 003881 320 KFAKSHGIRVSAVYGGMSK--------------------------------LDQF---------------KELKAGCEIV 352 (789)
Q Consensus 320 ~~~~~~~i~v~~~~gg~~~--------------------------------~~~~---------------~~l~~~~dIi 352 (789)
++ +++++.+.|.... .+.+ +.....++||
T Consensus 73 ~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiV 148 (540)
T 2vl7_A 73 LL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVI 148 (540)
T ss_dssp GG----TCCEEEC---------------------------------------------------------CTTGGGCSEE
T ss_pred hc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEE
Confidence 74 4555554442210 0000 1112457999
Q ss_pred EeChHHHHHHHhhccc-------ccCceeEEEEeccchhccCC-----------ChH-----------------------
Q 003881 353 IATPGRLIDMLKMKAL-------TMSRVTYLVLDEADRMFDLG-----------FEP----------------------- 391 (789)
Q Consensus 353 V~Tp~~L~~~l~~~~~-------~l~~i~~lVvDEah~m~~~~-----------f~~----------------------- 391 (789)
|+||..|++....+.+ .+....+|||||||+|.+.. +..
T Consensus 149 V~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~l~~~~ 228 (540)
T 2vl7_A 149 AMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKKVKDYI 228 (540)
T ss_dssp EEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred EEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 9999999885544332 24678899999999983310 000
Q ss_pred -------------------------------HHHHHHhh-----------------------------------cCC-C-
Q 003881 392 -------------------------------QIRSIVGQ-----------------------------------IRP-D- 403 (789)
Q Consensus 392 -------------------------------~i~~il~~-----------------------------------l~~-~- 403 (789)
.+..++.. +.| .
T Consensus 229 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~P~~~ 308 (540)
T 2vl7_A 229 NLLIDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVKVPSDV 308 (540)
T ss_dssp HHHHHHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEEECSCH
T ss_pred HHHHHHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEEehHHH
Confidence 00000000 000 0
Q ss_pred -------ce----EEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcccceeEEEEe--cCCCcccH----HHHHHhcCC
Q 003881 404 -------RQ----TLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHV--IPSDAEKL----PWLLEKLPG 466 (789)
Q Consensus 404 -------~q----~ll~SAT~~~~i~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~--~~~~~~k~----~~L~~~L~~ 466 (789)
+. +|++|||+++.+ .+...| ....... . ...+.+.. +++..+.. ..+.+.|..
T Consensus 309 ~~~l~~~~~~~~~~IltSATL~p~~-~~~~~f-----~~~~~~~-~---g~~~~~~~~~l~s~f~~r~~~~~~~~~~l~~ 378 (540)
T 2vl7_A 309 NQLIEDALNVKTFKVLMSGTLPESL-TLTNSY-----KIVVNES-Y---GRGEYYYCPNVTSELRKRNSNIPIYSILLKR 378 (540)
T ss_dssp HHHHHHHTCCSSCEEEEESSCCTTC-CCTTEE-----EEECCCC-----CCCEEEECTTCCCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCccCCeEEEcccCCCCc-ccchhc-----CCchhhe-e---cCCcceeccccCCCcccccCHHHHHHHHHHH
Confidence 11 366666665410 000000 0000000 0 01111111 12222111 223332222
Q ss_pred C--CCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEE--eehhhhccCCCCC----
Q 003881 467 M--IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLI--ATDVAARGLDIKS---- 538 (789)
Q Consensus 467 ~--~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLV--aT~v~~rGlDI~~---- 538 (789)
. ...+++|||++++..++.+++.|.. +. ..+++.. .+|..+++.|+.+. .||+ +|..+.+|||+|+
T Consensus 379 ~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~ 452 (540)
T 2vl7_A 379 IYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENL 452 (540)
T ss_dssp HHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------C
T ss_pred HHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCccc
Confidence 1 1457899999999999999988865 23 4556654 46889999999864 6777 8899999999998
Q ss_pred ccEEEEEcCCCC----H--------------------------HHHHHHHhhcCCCCCCCcEEEE
Q 003881 539 IKSVVNFDIARD----M--------------------------DMHVHRIGRTGRAGDKDGTAYT 573 (789)
Q Consensus 539 v~~VI~~d~p~s----~--------------------------~~yiQriGR~gR~G~k~G~~i~ 573 (789)
+++||++++|.. + ....|.+||+-|..+..|..++
T Consensus 453 ~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~l 517 (540)
T 2vl7_A 453 FESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYL 517 (540)
T ss_dssp EEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEE
T ss_pred ccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEE
Confidence 899999998852 1 1235899999997644565443
No 88
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.85 E-value=6.5e-21 Score=197.13 Aligned_cols=178 Identities=17% Similarity=0.184 Sum_probs=130.5
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHH
Q 003881 238 HAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLE 317 (789)
Q Consensus 238 ~~l~~~g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~ 317 (789)
+.+.......++++|.++++.+..+++++++++||||||+++.++++.++..... .....+|+++|+++|+.|+.+.
T Consensus 52 ~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---~~~~~~l~~~p~~~la~q~~~~ 128 (235)
T 3llm_A 52 AILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR---AAECNIVVTQPRRISAVSVAER 128 (235)
T ss_dssp HHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---GGGCEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---CCceEEEEeccchHHHHHHHHH
Confidence 3333334456789999999999999999999999999999999999887765422 2245799999999999999888
Q ss_pred HHHHhhh-cCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchh-ccCCChH-HHH
Q 003881 318 TKKFAKS-HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM-FDLGFEP-QIR 394 (789)
Q Consensus 318 ~~~~~~~-~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m-~~~~f~~-~i~ 394 (789)
+...... .+..+......... ....+++|+||||++|.+++.. .+.++++|||||||++ ++++|.. .+.
T Consensus 129 ~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~ 200 (235)
T 3llm_A 129 VAFERGEEPGKSCGYSVRFESI-----LPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLR 200 (235)
T ss_dssp HHHTTTCCTTSSEEEEETTEEE-----CCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHH
T ss_pred HHHHhccccCceEEEeechhhc-----cCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHH
Confidence 7765432 23333322211110 0013488999999999999865 4889999999999986 7777764 444
Q ss_pred HHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCe
Q 003881 395 SIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPV 429 (789)
Q Consensus 395 ~il~~l~~~~q~ll~SAT~~~~i~~l~~~~l~~p~ 429 (789)
.++.. .+++|+++||||++... +++.+...|+
T Consensus 201 ~i~~~-~~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 201 DVVQA-YPEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp HHHHH-CTTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred HHHhh-CCCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 55544 46899999999999775 5666555554
No 89
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.84 E-value=3.8e-21 Score=204.44 Aligned_cols=156 Identities=19% Similarity=0.116 Sum_probs=127.7
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003881 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~ 325 (789)
.+|+|+|.++++.++.+++.|++++||+|||+++++++..++.. ...++|||+||++|+.||.+++.++....
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-------~~~~~lil~Pt~~L~~q~~~~l~~~~~~~ 184 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-------YEGKILIIVPTTALTTQMADDFVDYRLFS 184 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH-------CSSEEEEECSSHHHHHHHHHHHHHHTSCC
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc-------CCCeEEEEECCHHHHHHHHHHHHHhcccc
Confidence 37999999999999998899999999999999998887776532 23479999999999999999999997655
Q ss_pred CCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcCCCce
Q 003881 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405 (789)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q 405 (789)
...+..+++|..... .....++|+|+||+.|... ....+..+++|||||||++.+ ..+..++..+...++
T Consensus 185 ~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~ 254 (282)
T 1rif_A 185 HAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMF 254 (282)
T ss_dssp GGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCE
T ss_pred cceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCe
Confidence 667888888876543 1224589999999887543 234567899999999999874 478888898888999
Q ss_pred EEEEeccCcHHHH
Q 003881 406 TLLFSATMPRKVE 418 (789)
Q Consensus 406 ~ll~SAT~~~~i~ 418 (789)
+++||||+++...
T Consensus 255 ~l~lSATp~~~~~ 267 (282)
T 1rif_A 255 KFGLSGSLRDGKA 267 (282)
T ss_dssp EEEECSSCCTTST
T ss_pred EEEEeCCCCCcch
Confidence 9999999986543
No 90
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.84 E-value=3.1e-19 Score=207.38 Aligned_cols=282 Identities=16% Similarity=0.115 Sum_probs=182.0
Q ss_pred CCcHHHHHHHHH----HHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHh
Q 003881 247 KPTSIQCQALPI----ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (789)
Q Consensus 247 ~ptpiQ~~~i~~----il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~ 322 (789)
.|+|+|.+++.. +..++++++.++||+|||++|++|++.. ++++||++||++|+.|+.+++..+.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~-----------~~~v~i~~pt~~l~~q~~~~~~~l~ 71 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV-----------KPKVLFVVRTHNEFYPIYRDLTKIR 71 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH-----------CSEEEEEESSGGGHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC-----------CCeEEEEcCCHHHHHHHHHHHHHHh
Confidence 689999998765 4578999999999999999999999872 5789999999999999999999887
Q ss_pred hhcCCeEEEEECCCC---------------------------------hHHHH------------------HHHhcCCcE
Q 003881 323 KSHGIRVSAVYGGMS---------------------------------KLDQF------------------KELKAGCEI 351 (789)
Q Consensus 323 ~~~~i~v~~~~gg~~---------------------------------~~~~~------------------~~l~~~~dI 351 (789)
...+++++++.|... ....+ +.....++|
T Consensus 72 ~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adI 151 (551)
T 3crv_A 72 EKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADV 151 (551)
T ss_dssp CSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSE
T ss_pred hhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCE
Confidence 766888888776321 11221 223456899
Q ss_pred EEeChHHHHHHHhhccccc-CceeEEEEeccchhccCC------------------------------------------
Q 003881 352 VIATPGRLIDMLKMKALTM-SRVTYLVLDEADRMFDLG------------------------------------------ 388 (789)
Q Consensus 352 iV~Tp~~L~~~l~~~~~~l-~~i~~lVvDEah~m~~~~------------------------------------------ 388 (789)
||+||..|++...+..+.+ ....+|||||||+|.+ .
T Consensus 152 VV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~ 230 (551)
T 3crv_A 152 IALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLP 230 (551)
T ss_dssp EEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCS
T ss_pred EEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999998765443333 4678999999998865 1
Q ss_pred -------------ChHHHHHH----------------------------H----------------------------hh
Q 003881 389 -------------FEPQIRSI----------------------------V----------------------------GQ 399 (789)
Q Consensus 389 -------------f~~~i~~i----------------------------l----------------------------~~ 399 (789)
+...+..+ + ..
T Consensus 231 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~ 310 (551)
T 3crv_A 231 DEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNL 310 (551)
T ss_dssp CSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGG
T ss_pred cccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHH
Confidence 00000000 0 00
Q ss_pred cCCC-ceEEEEeccCcHHHHHHHHHHhCC-CeEE--eeccccCcccceeEEEEecCC----Ccc-----cHHHHHHhcCC
Q 003881 400 IRPD-RQTLLFSATMPRKVEKLAREILSD-PVRV--TVGEVGMANEDITQVVHVIPS----DAE-----KLPWLLEKLPG 466 (789)
Q Consensus 400 l~~~-~q~ll~SAT~~~~i~~l~~~~l~~-p~~i--~i~~~~~~~~~i~q~~~~~~~----~~~-----k~~~L~~~L~~ 466 (789)
+... +.+|++|||+.+ ...+...+... +... .....+..- ..+...+++. ... -...+.+.|..
T Consensus 311 ~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf--~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~ 387 (551)
T 3crv_A 311 LNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRV--SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLK 387 (551)
T ss_dssp GGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCC--SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHH
T ss_pred HhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcC--CCceEEEEeCCCCCccccCCHHHHHHHHHHHHH
Confidence 1122 688999999976 33333333222 2210 000111111 1222222221 111 12334333333
Q ss_pred CC--CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEee--hhhhccCCCC---C-
Q 003881 467 MI--DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT--DVAARGLDIK---S- 538 (789)
Q Consensus 467 ~~--~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT--~v~~rGlDI~---~- 538 (789)
.. ..+++|||++++..++.+.+. .+..+..-..+++ +...++.|+.....||+|| ..+.+|||++ +
T Consensus 388 l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~ 461 (551)
T 3crv_A 388 IYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRS 461 (551)
T ss_dssp HHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEE
T ss_pred HHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCCc
Confidence 22 367999999999999999873 3444433333455 4557788854445899998 6889999999 3
Q ss_pred -ccEEEEEcCCC
Q 003881 539 -IKSVVNFDIAR 549 (789)
Q Consensus 539 -v~~VI~~d~p~ 549 (789)
++.||+..+|.
T Consensus 462 ~l~~viI~~lPf 473 (551)
T 3crv_A 462 LISDVVIVGIPY 473 (551)
T ss_dssp SEEEEEEESCCC
T ss_pred ceeEEEEEcCCC
Confidence 88999877654
No 91
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.75 E-value=4.4e-17 Score=191.14 Aligned_cols=313 Identities=16% Similarity=0.153 Sum_probs=191.0
Q ss_pred CCcHHHHHHHH----HHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHh
Q 003881 247 KPTSIQCQALP----IILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (789)
Q Consensus 247 ~ptpiQ~~~i~----~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~ 322 (789)
+|+|.|.+.+. .+.+++++++.||||+|||++|++|++.++.. .++++||++||++|+.|+.+++.++.
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~-------~~~kvli~t~T~~l~~Qi~~el~~l~ 75 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE-------RKLKVLYLVRTNSQEEQVIKELRSLS 75 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH-------HTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh-------cCCeEEEECCCHHHHHHHHHHHHHHh
Confidence 58999999985 45688999999999999999999999998743 35789999999999999999999998
Q ss_pred hhcCCeEEEEECCCChHH------------------HHHH----------------------------------------
Q 003881 323 KSHGIRVSAVYGGMSKLD------------------QFKE---------------------------------------- 344 (789)
Q Consensus 323 ~~~~i~v~~~~gg~~~~~------------------~~~~---------------------------------------- 344 (789)
....++++.+.|+.+.-- .+..
T Consensus 76 ~~~~~~~~~l~gr~~lC~~~~~~~~~~~~~~~~~~~~C~~l~~~~~~~~~~~C~~~~~~~~~gd~~~~l~~~~~die~l~ 155 (620)
T 4a15_A 76 STMKIRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPTAEEFY 155 (620)
T ss_dssp HHSCCCEEECCCHHHHCSSHHHHCCCSSCCHHHHHHHHHHHHHHHHTTCTTSSTTCSGGGGCHHHHHHHHHHCCCHHHHH
T ss_pred hccCeEEEEEECCCcccccChhhhhcccchhhhHHHHHHHHHhccccCCCCCCCcccccCcccchhHHhccCCCCHHHHH
Confidence 777787777666432000 0000
Q ss_pred ----------------HhcCCcEEEeChHHHHHHHhhcc----c-ccCceeEEEEeccchhcc-----------------
Q 003881 345 ----------------LKAGCEIVIATPGRLIDMLKMKA----L-TMSRVTYLVLDEADRMFD----------------- 386 (789)
Q Consensus 345 ----------------l~~~~dIiV~Tp~~L~~~l~~~~----~-~l~~i~~lVvDEah~m~~----------------- 386 (789)
....+||||+.+..|++...+.. . ....-.+|||||||+|.+
T Consensus 156 ~~~~~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~a~~~~S~~ls~~~l~~ 235 (620)
T 4a15_A 156 DYGERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESLNR 235 (620)
T ss_dssp HHHHHTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHHHHHHHCEEEEHHHHHH
T ss_pred HHhhhcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHHHHHhhcceeCHHHHHH
Confidence 01238999999988776543221 1 123557899999998732
Q ss_pred ---------CCC------h----H---------------------------------------HHHHH-------Hh---
Q 003881 387 ---------LGF------E----P---------------------------------------QIRSI-------VG--- 398 (789)
Q Consensus 387 ---------~~f------~----~---------------------------------------~i~~i-------l~--- 398 (789)
..+ . . .+..+ ..
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 315 (620)
T 4a15_A 236 ADREAQAYGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDVRIRFQEFMEYMRIMNKRSEREIRSLLNYLYLFGEYVE 315 (620)
T ss_dssp HHHHHHHTTCCEEETTEEHHHHHHHHHHHHHHHHHHHCSSSCEEECTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHH
Confidence 000 0 0 00000 00
Q ss_pred ----------------------h---cC------------------------------CCceEEEEeccCcHHHHHHHHH
Q 003881 399 ----------------------Q---IR------------------------------PDRQTLLFSATMPRKVEKLARE 423 (789)
Q Consensus 399 ----------------------~---l~------------------------------~~~q~ll~SAT~~~~i~~l~~~ 423 (789)
. .. ..+.+|++|||+.+ ...+...
T Consensus 316 ~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~l~~~~~~~~il~SaTL~p-~~~~~~~ 394 (620)
T 4a15_A 316 NEKEKVGKVPFSYCSSVASRIIAFSDQDEEKYAAILSPEDGGYMQAACLDPSGILEVLKESKTIHMSGTLDP-FDFYSDI 394 (620)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHHHTSCTTTEEEEEECGGGCEEEEEECCTHHHHGGGGGSEEEEEESSCCS-HHHHHHH
T ss_pred hhccccccccccHHHHHHHHHHHHhhcCCCCEEEEEEeCCCcEEEEEECCHHHHHHHHhCCeEEEEccCCCc-HHHHHHH
Confidence 0 00 01246899999976 3444443
Q ss_pred HhCCCeEEeeccccCcccceeEEEEecCCC--------cccHHHHHHhcCCCC--CCCCEEEEecccccHHHHHHHHHHc
Q 003881 424 ILSDPVRVTVGEVGMANEDITQVVHVIPSD--------AEKLPWLLEKLPGMI--DDGDVLVFASKKTTVDEIESQLAQK 493 (789)
Q Consensus 424 ~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~--------~~k~~~L~~~L~~~~--~~~kvLVF~~s~~~a~~l~~~L~~~ 493 (789)
+.-++..+.+.... ...+ +.+.+...- ..-...+.+.|.... ..+++|||++++..++.+++.|.
T Consensus 395 lGl~~~~~~~~spf-~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~-- 469 (620)
T 4a15_A 395 TGFEIPFKKIGEIF-PPEN--RYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVS-- 469 (620)
T ss_dssp HCCCCCEEECCCCS-CGGG--EEEEEECCC-------CHHHHHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCC--
T ss_pred hCCCceeeecCCCC-CHHH--eEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHH--
Confidence 32222333332221 1122 122222111 111222333332221 36789999999999999998886
Q ss_pred CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeeh--hhhccCCCCC--ccEEEEEcCCCC-------------------
Q 003881 494 GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD--VAARGLDIKS--IKSVVNFDIARD------------------- 550 (789)
Q Consensus 494 g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~--v~~rGlDI~~--v~~VI~~d~p~s------------------- 550 (789)
.+... ..-+++..++..+++.|+ +...||++|. .+.+|||+++ ++.||+..+|.-
T Consensus 470 ~~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~ 547 (620)
T 4a15_A 470 FEHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGK 547 (620)
T ss_dssp SCCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSC
T ss_pred hcchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCC
Confidence 22222 444566678999999999 8889999985 8899999998 788999877642
Q ss_pred HHH--H--------HHHHhhcCCCCCCCcEEEEE
Q 003881 551 MDM--H--------VHRIGRTGRAGDKDGTAYTL 574 (789)
Q Consensus 551 ~~~--y--------iQriGR~gR~G~k~G~~i~l 574 (789)
.-. | .|.+||+-|.-+..|..+++
T Consensus 548 ~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~ll 581 (620)
T 4a15_A 548 GWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVIL 581 (620)
T ss_dssp HHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEE
T ss_pred CchHHhHHHHHHHHHHHhCccccCCCceEEEEEE
Confidence 111 2 59999999986445555444
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.75 E-value=8.3e-18 Score=174.03 Aligned_cols=139 Identities=22% Similarity=0.149 Sum_probs=110.1
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003881 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~ 325 (789)
..|+++|.+++..++.++++|++++||+|||++++.++... +.++||++|+++|+.||.+++.++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----------~~~~liv~P~~~L~~q~~~~~~~~---- 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-----------CSCEEEEESSHHHHHHHHHHHGGG----
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHHHhC----
Confidence 58999999999999999999999999999999987776542 356899999999999999998884
Q ss_pred CCe-EEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcCCCc
Q 003881 326 GIR-VSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR 404 (789)
Q Consensus 326 ~i~-v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~ 404 (789)
+++ +..+.|+... ..+|+|+||+.+...+.. ....+++|||||||++.+..+. .++..++ ..
T Consensus 157 ~~~~v~~~~g~~~~---------~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~~~----~i~~~~~-~~ 219 (237)
T 2fz4_A 157 GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYV----QIAQMSI-AP 219 (237)
T ss_dssp CGGGEEEESSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTTHH----HHHHTCC-CS
T ss_pred CCCeEEEEeCCCCC---------cCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChHHH----HHHHhcc-CC
Confidence 677 7777766542 478999999998766542 1346899999999998776543 3444443 67
Q ss_pred eEEEEeccCcHH
Q 003881 405 QTLLFSATMPRK 416 (789)
Q Consensus 405 q~ll~SAT~~~~ 416 (789)
++|+||||+++.
T Consensus 220 ~~l~LSATp~r~ 231 (237)
T 2fz4_A 220 FRLGLTATFERE 231 (237)
T ss_dssp EEEEEEESCC--
T ss_pred EEEEEecCCCCC
Confidence 899999998754
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.74 E-value=2.9e-18 Score=180.80 Aligned_cols=127 Identities=15% Similarity=0.270 Sum_probs=101.5
Q ss_pred CCcccHHHHHHhcCCCC-CCCCEEEEecccccHHHHHHHHHHc-CCceeeccCCCCHHHHHHHHHHhhcC-Ccc-eEEee
Q 003881 452 SDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQK-GFKAAALHGDKDQASRMEILQKFKSG-VYH-VLIAT 527 (789)
Q Consensus 452 ~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~-g~~v~~lhg~~~~~eR~~~l~~F~~G-~~~-VLVaT 527 (789)
....|+..|.++|.... ...++||||++...++.|...|... ++.+..+||++++.+|..+++.|+++ .++ +||+|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 45678888888887653 4569999999999999999999885 99999999999999999999999998 677 78999
Q ss_pred hhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCC-CcEEEEEEccc
Q 003881 528 DVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDK-DGTAYTLVTQK 578 (789)
Q Consensus 528 ~v~~rGlDI~~v~~VI~~d~p~s~~~yiQriGR~gR~G~k-~G~~i~lv~~~ 578 (789)
+++++|||++.+++||+||+|||+..|+||+||++|.|++ ...+|.|++..
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 9999999999999999999999999999999999999943 44567788765
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.79 E-value=8.7e-09 Score=120.59 Aligned_cols=146 Identities=21% Similarity=0.255 Sum_probs=93.9
Q ss_pred cHHHHHHHHHHHcCCCEEEEccCCChhh--HHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003881 249 TSIQCQALPIILSGRDIIGIAKTGSGKT--AAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (789)
Q Consensus 249 tpiQ~~~i~~il~grdvll~a~TGsGKT--la~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~ 326 (789)
++.|+++++.++.++.+++.+++|+||| ++++++++..+.. ..+.++++++||..+|.++.+.+..+....+
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~------~~~~~vll~APTg~AA~~L~e~~~~~~~~l~ 224 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD------GERCRIRLAAPTGKAAARLTESLGKALRQLP 224 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS------SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh------cCCCeEEEEeCChhHHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999999999 5556666554311 2356799999999999999988887766554
Q ss_pred CeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcCCCceE
Q 003881 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 406 (789)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ 406 (789)
+..... ..... ....+ ..++-.+|+.. . +.........+++||||||+ |++ ...+..++..++...|+
T Consensus 225 l~~~~~-~~~~~--~~~Ti---h~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~~~~~l 292 (608)
T 1w36_D 225 LTDEQK-KRIPE--DASTL---HRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEAS-MID---LPMMSRLIDALPDHARV 292 (608)
T ss_dssp CCSCCC-CSCSC--CCBTT---TSCC-------------CTTSCCSCSEEEECSGG-GCB---HHHHHHHHHTCCTTCEE
T ss_pred CCHHHH-hccch--hhhhh---HhhhccCCCch-H-HHhccCCCCCCCEEEEechh-hCC---HHHHHHHHHhCCCCCEE
Confidence 321111 00000 00000 11222233221 1 11111222378999999999 555 56778889999989999
Q ss_pred EEEecc
Q 003881 407 LLFSAT 412 (789)
Q Consensus 407 ll~SAT 412 (789)
|++.-.
T Consensus 293 iLvGD~ 298 (608)
T 1w36_D 293 IFLGDR 298 (608)
T ss_dssp EEEECT
T ss_pred EEEcch
Confidence 998766
No 95
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.20 E-value=2.5e-06 Score=90.48 Aligned_cols=124 Identities=10% Similarity=0.110 Sum_probs=89.4
Q ss_pred CcccHHHHHHhcCCCCC-CCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhh
Q 003881 453 DAEKLPWLLEKLPGMID-DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAA 531 (789)
Q Consensus 453 ~~~k~~~L~~~L~~~~~-~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~ 531 (789)
.+.|+..|-.+|..... +.+||||++.....+.|..+|...++.+..+.|.....++. . .+..+.|.+.|..++
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-~----~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-A----NDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-c----ccCCceEEEEECCCC
Confidence 46777776666554433 45999999999999999999999999999999986553322 1 244555655576666
Q ss_pred ccCC-----CCCccEEEEEcCCCCHHHH-HHHHhhcCCCC---CCCcEEEEEEccccHH
Q 003881 532 RGLD-----IKSIKSVVNFDIARDMDMH-VHRIGRTGRAG---DKDGTAYTLVTQKEAR 581 (789)
Q Consensus 532 rGlD-----I~~v~~VI~~d~p~s~~~y-iQriGR~gR~G---~k~G~~i~lv~~~d~~ 581 (789)
-|+| +..+++||.||..||+..- +|++-|++|.| .+...+|.|++.+-.+
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiE 240 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSID 240 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHH
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHH
Confidence 6675 7889999999999999886 99999999984 2456788898876543
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.03 E-value=3.1e-05 Score=90.89 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=56.3
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHH
Q 003881 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 245 ~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~ 321 (789)
+..+++.|.+++..++...-+++.||+|+|||.+ +..++.++... .+.++|+++||...+.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~-~~~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT-SATIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHH-HHHHHHHHHTS------SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHH-HHHHHHHHHHc------CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 4578999999999999888889999999999986 45555665542 3567999999999999988777653
No 97
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.97 E-value=1.2e-05 Score=94.78 Aligned_cols=68 Identities=24% Similarity=0.296 Sum_probs=54.6
Q ss_pred CCCcHHHHHHHHHHHcCCC-EEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHH
Q 003881 246 EKPTSIQCQALPIILSGRD-IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~grd-vll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~ 321 (789)
..+.+-|.+|+..++..++ .||.||.|+|||.+ ++.++.++++. +.++|+++||...+.++.+.+...
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~t-i~~~I~~l~~~-------~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTT-VVEIILQAVKQ-------GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHH-HHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHH-HHHHHHHHHhC-------CCeEEEEcCchHHHHHHHHHHHhc
Confidence 3688999999999998775 57889999999986 55566666543 567999999999999988776543
No 98
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.94 E-value=0.00018 Score=84.70 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=55.1
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhh
Q 003881 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~ 323 (789)
..+++-|.+++. .....++|.|+.|||||.+ ++.-+.+++..... ...++|+|++|+..+.++.+.+.++..
T Consensus 8 ~~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~-l~~ri~~l~~~~~~---~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 8 DSLNDKQREAVA--APRSNLLVLAGAGSGKTRV-LVHRIAWLMSVENC---SPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TTCCHHHHHHHT--CCSSCEEEEECTTSCHHHH-HHHHHHHHHHTSCC---CGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred hcCCHHHHHHHh--CCCCCEEEEECCCCCHHHH-HHHHHHHHHHhCCC---ChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 578999999997 3356899999999999986 55555666553211 123589999999999999999888753
No 99
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.91 E-value=3.2e-05 Score=87.26 Aligned_cols=135 Identities=13% Similarity=0.158 Sum_probs=79.9
Q ss_pred cCCCCCcHHHHHHHHHHHcC-----CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHH
Q 003881 243 QGYEKPTSIQCQALPIILSG-----RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLE 317 (789)
Q Consensus 243 ~g~~~ptpiQ~~~i~~il~g-----rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~ 317 (789)
..|..|++-|.+++..++.. ..+++.|+.|+|||.+ +..++.++.... ...+++++||...|..+.+.
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~l-l~~~~~~l~~~~------~~~il~~a~T~~Aa~~l~~~ 93 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTL-TKFIIEALISTG------ETGIILAAPTHAAKKILSKL 93 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHH-HHHHHHHHHHTT------CCCEEEEESSHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHH-HHHHHHHHHhcC------CceEEEecCcHHHHHHHHhh
Confidence 45788999999999977543 3899999999999975 455666664431 13589999998888665443
Q ss_pred HHHHhhhcCCeEEEEECCCChHHHHHHHh----cCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHH
Q 003881 318 TKKFAKSHGIRVSAVYGGMSKLDQFKELK----AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQI 393 (789)
Q Consensus 318 ~~~~~~~~~i~v~~~~gg~~~~~~~~~l~----~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i 393 (789)
+ ++.+..++ .+..+. .....+.. .....+..+++|||||++.+. ..++
T Consensus 94 ~-------~~~~~T~h-------~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~iiiDE~~~~~----~~~~ 145 (459)
T 3upu_A 94 S-------GKEASTIH-------SILKINPVTYEENVLFEQ----------KEVPDLAKCRVLICDEVSMYD----RKLF 145 (459)
T ss_dssp H-------SSCEEEHH-------HHHTEEEEECSSCEEEEE----------CSCCCCSSCSEEEESCGGGCC----HHHH
T ss_pred h-------ccchhhHH-------HHhccCcccccccchhcc----------cccccccCCCEEEEECchhCC----HHHH
Confidence 3 22211111 000000 00000000 112345678999999999642 3355
Q ss_pred HHHHhhcCCCceEEEEecc
Q 003881 394 RSIVGQIRPDRQTLLFSAT 412 (789)
Q Consensus 394 ~~il~~l~~~~q~ll~SAT 412 (789)
..++..++...+++++.-.
T Consensus 146 ~~l~~~~~~~~~~~~vGD~ 164 (459)
T 3upu_A 146 KILLSTIPPWCTIIGIGDN 164 (459)
T ss_dssp HHHHHHSCTTCEEEEEECT
T ss_pred HHHHHhccCCCEEEEECCH
Confidence 5555655555566665433
No 100
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.90 E-value=2.8e-05 Score=90.04 Aligned_cols=124 Identities=23% Similarity=0.275 Sum_probs=82.0
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003881 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~ 325 (789)
..+++.|.+++..++..+.+++.++.|+|||.. +..++..+.. .+.++++++||...+..+.+.+
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~-i~~l~~~l~~-------~g~~Vl~~ApT~~Aa~~L~e~~------- 252 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTT-TKAVADLAES-------LGLEVGLCAPTGKAARRLGEVT------- 252 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHH-HHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHH-------
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHH-HHHHHHHHHh-------cCCeEEEecCcHHHHHHhHhhh-------
Confidence 468999999999999999999999999999975 3334444322 3567899999998887665432
Q ss_pred CCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHH----HhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcC
Q 003881 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDM----LKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR 401 (789)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~----l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~ 401 (789)
+.... |..+|+.. +.........+++||||||+.+. ...+..++..++
T Consensus 253 ~~~a~------------------------Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~ 304 (574)
T 3e1s_A 253 GRTAS------------------------TVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVP 304 (574)
T ss_dssp TSCEE------------------------EHHHHTTEETTEESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSC
T ss_pred cccHH------------------------HHHHHHcCCcchhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCc
Confidence 21111 11111100 01112233467899999999743 346667778787
Q ss_pred CCceEEEEecc
Q 003881 402 PDRQTLLFSAT 412 (789)
Q Consensus 402 ~~~q~ll~SAT 412 (789)
...++|++.-.
T Consensus 305 ~~~~lilvGD~ 315 (574)
T 3e1s_A 305 PGARVLLVGDT 315 (574)
T ss_dssp TTCEEEEEECT
T ss_pred CCCEEEEEecc
Confidence 77777776544
No 101
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.90 E-value=4.1e-05 Score=92.01 Aligned_cols=70 Identities=17% Similarity=0.285 Sum_probs=56.1
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHH
Q 003881 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 245 ~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~ 321 (789)
+..+++.|.+|+..++...-+++.|+.|+|||.+ +..++.+++.. .+.++|+++||...+.++.+.+.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~-i~~~i~~l~~~------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVT-SATIVYHLSKI------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHH-HHHHHHHHHHH------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHH-HHHHHHHHHhC------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 4578999999999999877789999999999976 44455555432 2456999999999999998887764
No 102
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.86 E-value=6.6e-05 Score=90.16 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=56.2
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHH
Q 003881 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 245 ~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~ 321 (789)
...+++.|.+|+..++...-+++.|+.|+|||.+ +..++.+++.. .+.++|+++||...+.++.+.+.+.
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~t-i~~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT-SATIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHH-HHHHHHHHHTT------CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHH-HHHHHHHHHHc------CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 4568999999999999888889999999999976 45556666542 3457999999999999887776543
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.99 E-value=0.0052 Score=67.13 Aligned_cols=73 Identities=16% Similarity=0.075 Sum_probs=57.5
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003881 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (789)
Q Consensus 247 ~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~ 325 (789)
.|+|+|...+..+...+-+++..+-+.|||.+.+..++..++.. .+..+++++||+..|..+.+.++.+....
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~------~g~~v~~vA~t~~qA~~vf~~i~~mi~~~ 235 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS------SSCEEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 68999999998776567789999999999987666555544332 35679999999999998988888877643
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.67 E-value=0.012 Score=68.20 Aligned_cols=73 Identities=16% Similarity=0.075 Sum_probs=58.1
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003881 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (789)
Q Consensus 247 ~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~ 325 (789)
.|+|+|...+..+...+.+++..+-++|||.+....++..++.. .+..+++++|++..|..+...++.+....
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~------~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS------SSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC------CCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 68999999998775667799999999999987665555555432 24579999999999999998888887644
No 105
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.02 E-value=0.023 Score=67.55 Aligned_cols=110 Identities=15% Similarity=0.145 Sum_probs=72.3
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003881 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~ 325 (789)
..+++-|.+++.. ....++|.|..|||||.+ ++.-+.+++..... ....+|+|+.|+..|.++.+.+.++....
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~v-L~~ri~~ll~~~~~---~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~ 83 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRV-LTHRIAYLMAEKHV---APWNILAITFTNKAAREMRERVQSLLGGA 83 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHH-HHHHHHHHHHTTCC---CGGGEEEEESSHHHHHHHHHHHHHHHGGG
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHH-HHHHHHHHHHhcCC---CHHHeEEEeccHHHHHHHHHHHHHHhccc
Confidence 5789999999865 356899999999999986 55555666543211 12358999999999999998888775321
Q ss_pred CCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHH-hhcccccC-ceeEEEEeccch
Q 003881 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDML-KMKALTMS-RVTYLVLDEADR 383 (789)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l-~~~~~~l~-~i~~lVvDEah~ 383 (789)
...+-|+|...|...+ ......+. .-.+.|+|+.+.
T Consensus 84 ----------------------~~~~~v~Tfhs~~~~ilr~~~~~~g~~~~f~i~d~~d~ 121 (724)
T 1pjr_A 84 ----------------------AEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQ 121 (724)
T ss_dssp ----------------------GTTSEEEEHHHHHHHHHHHHGGGGTCCTTCEECCHHHH
T ss_pred ----------------------ccCcEEeeHHHHHHHHHHHHHHHhCCCCCCEECCHHHH
Confidence 0235678877765433 32211110 123567787663
No 106
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.96 E-value=0.011 Score=58.21 Aligned_cols=39 Identities=15% Similarity=0.057 Sum_probs=26.2
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcH
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTR 308 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~Ptr 308 (789)
|+=.++++++|+|||.+.+- ++.... ..+.+++|+.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~-~a~r~~-------~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIR-RIRRAK-------IAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHH-HHHHHH-------HTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHH-HHHHHH-------HCCCEEEEEEecc
Confidence 44578899999999987443 333332 2366789998873
No 107
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.91 E-value=0.017 Score=55.72 Aligned_cols=30 Identities=30% Similarity=0.354 Sum_probs=22.5
Q ss_pred cHHHHHHHHHHH---------cCCCEEEEccCCChhhHH
Q 003881 249 TSIQCQALPIIL---------SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 249 tpiQ~~~i~~il---------~grdvll~a~TGsGKTla 278 (789)
.+.|.+++..+. .++.+++.+++|+|||..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL 54 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHL 54 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHH
Confidence 455666665554 467899999999999964
No 108
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.80 E-value=0.026 Score=54.96 Aligned_cols=40 Identities=18% Similarity=0.114 Sum_probs=26.0
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcH
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTR 308 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~Ptr 308 (789)
.++-.++.+++|+|||...+ -++..+.. .+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll-~~~~~~~~-------~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELL-SFVEIYKL-------GKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHH-HHHHHHHH-------TTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHH-HHHHHHHH-------CCCeEEEEeecc
Confidence 35567889999999998633 33333221 245688888873
No 109
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.60 E-value=0.0089 Score=59.63 Aligned_cols=39 Identities=10% Similarity=0.004 Sum_probs=26.3
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHH
Q 003881 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRE 309 (789)
Q Consensus 263 rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~Ptre 309 (789)
+=.++++++|+|||.+.+--+.++. ..+.+++|+.|...
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~--------~~g~kVli~k~~~d 67 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQ--------FAKQHAIVFKPCID 67 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHH--------HTTCCEEEEECC--
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH--------HCCCEEEEEEeccC
Confidence 3456899999999987444444443 33667999998753
No 110
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.56 E-value=0.026 Score=62.44 Aligned_cols=107 Identities=17% Similarity=0.146 Sum_probs=62.7
Q ss_pred CEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHH
Q 003881 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK 343 (789)
Q Consensus 264 dvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~ 343 (789)
-.++.|+.|+|||.. +..++.. ...||++||++++..|.+.+.+. +..
T Consensus 163 v~~I~G~aGsGKTt~-----I~~~~~~--------~~~lVlTpT~~aa~~l~~kl~~~----~~~--------------- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKE-----ILSRVNF--------EEDLILVPGRQAAEMIRRRANAS----GII--------------- 210 (446)
T ss_dssp EEEEEECTTSCHHHH-----HHHHCCT--------TTCEEEESCHHHHHHHHHHHTTT----SCC---------------
T ss_pred EEEEEcCCCCCHHHH-----HHHHhcc--------CCeEEEeCCHHHHHHHHHHhhhc----Ccc---------------
Confidence 367889999999975 2333221 23599999999998887665332 110
Q ss_pred HHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEecc
Q 003881 344 ELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT 412 (789)
Q Consensus 344 ~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT 412 (789)
....+-|.|.+.++. +........+++||||||-. ++. ..+..++..++. .+++++.-+
T Consensus 211 ---~~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~sm-~~~---~~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 211 ---VATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGLM-LHT---GCVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp ---CCCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGGG-SCH---HHHHHHHHHTTC-SEEEEEECT
T ss_pred ---ccccceEEEeHHhhc--CCCCCCCCcCCEEEEeCccc-CCH---HHHHHHHHhCCC-CEEEEecCc
Confidence 012234677766543 22222222478999999984 332 233344444443 566666555
No 111
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.22 E-value=0.14 Score=54.31 Aligned_cols=25 Identities=12% Similarity=-0.017 Sum_probs=18.6
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHH
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l 287 (789)
+.++++.+++|+|||++ +-.++..+
T Consensus 45 ~~~lli~GpPGTGKT~~-v~~v~~~L 69 (318)
T 3te6_A 45 NKLFYITNADDSTKFQL-VNDVMDEL 69 (318)
T ss_dssp CCEEEEECCCSHHHHHH-HHHHHHHH
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHH
Confidence 36799999999999976 44444444
No 112
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.95 E-value=0.097 Score=57.98 Aligned_cols=132 Identities=18% Similarity=0.245 Sum_probs=73.1
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEc-C-cHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHH
Q 003881 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA-P-TRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (789)
Q Consensus 263 rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~-P-treLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~ 340 (789)
+-+++++++|+|||.... .|...+.. .+.+++++. . .|.-+ .+.+..+....++.+.....+.
T Consensus 98 ~vI~lvG~~GsGKTTt~~--kLA~~l~~------~G~kVllv~~D~~r~~a---~eqL~~~~~~~gv~~~~~~~~~---- 162 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAG--KLAYFYKK------RGYKVGLVAADVYRPAA---YDQLLQLGNQIGVQVYGEPNNQ---- 162 (433)
T ss_dssp EEEEECCCTTSCHHHHHH--HHHHHHHH------TTCCEEEEEECCSCHHH---HHHHHHHHHTTTCCEECCTTCS----
T ss_pred eEEEEECCCCCCHHHHHH--HHHHHHHH------cCCeEEEEecCccchhH---HHHHHHHHHhcCCceeeccccC----
Confidence 457778999999997522 33333321 244455543 3 33333 2344555554455443222211
Q ss_pred HHHHHhcCCcEEEeChHHHH-HHHhhcccccCceeEEEEeccchhc---cCCChHHHHHHHhhcCCCceEEEEeccCcHH
Q 003881 341 QFKELKAGCEIVIATPGRLI-DMLKMKALTMSRVTYLVLDEADRMF---DLGFEPQIRSIVGQIRPDRQTLLFSATMPRK 416 (789)
Q Consensus 341 ~~~~l~~~~dIiV~Tp~~L~-~~l~~~~~~l~~i~~lVvDEah~m~---~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~ 416 (789)
.|..+. ..+. ......+++||||++-++. +..+...+..++..+.++.-+++++|+....
T Consensus 163 --------------dp~~i~~~al~--~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~ 226 (433)
T 3kl4_A 163 --------------NPIEIAKKGVD--IFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK 226 (433)
T ss_dssp --------------CHHHHHHHHHH--HTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG
T ss_pred --------------CHHHHHHHHHH--HHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH
Confidence 122221 1121 1223478899999998643 3334566667777777787788899987665
Q ss_pred HHHHHHHHh
Q 003881 417 VEKLAREIL 425 (789)
Q Consensus 417 i~~l~~~~l 425 (789)
....+..|.
T Consensus 227 a~~~a~~f~ 235 (433)
T 3kl4_A 227 AYDLASRFH 235 (433)
T ss_dssp GHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555565553
No 113
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.88 E-value=0.019 Score=57.80 Aligned_cols=91 Identities=10% Similarity=0.128 Sum_probs=49.6
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHH
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~ 340 (789)
.|.-+++.+++|+|||.+. +-++..+. ..+.+++|+.|...-- -...++...++..
T Consensus 11 ~G~i~litG~mGsGKTT~l-l~~~~r~~-------~~g~kVli~~~~~d~r-----~~~~i~srlG~~~----------- 66 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAEL-IRRLHRLE-------YADVKYLVFKPKIDTR-----SIRNIQSRTGTSL----------- 66 (223)
T ss_dssp CCEEEEEECSTTSCHHHHH-HHHHHHHH-------HTTCCEEEEEECCCGG-----GCSSCCCCCCCSS-----------
T ss_pred CcEEEEEECCCCCcHHHHH-HHHHHHHH-------hcCCEEEEEEeccCch-----HHHHHHHhcCCCc-----------
Confidence 3455788899999999874 33333332 2355688887653100 0001111112110
Q ss_pred HHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchh
Q 003881 341 QFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM 384 (789)
Q Consensus 341 ~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m 384 (789)
..+.+.+...++..+.... .-..+++|||||++.+
T Consensus 67 --------~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 67 --------PSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFF 101 (223)
T ss_dssp --------CCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGS
T ss_pred --------cccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccC
Confidence 1233456666666654322 2245789999999974
No 114
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.81 E-value=0.013 Score=55.19 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=24.5
Q ss_pred CceeEEEEeccchhccCCChHHHHHHHhhcCCC-ceEEEEecc
Q 003881 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD-RQTLLFSAT 412 (789)
Q Consensus 371 ~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~-~q~ll~SAT 412 (789)
.+.++|||||++.+.... ...+..+++.+... ..++++++.
T Consensus 82 ~~~~lLilDE~~~~~~~~-~~~l~~li~~~~~~g~~~iiits~ 123 (149)
T 2kjq_A 82 FEAEYLAVDQVEKLGNEE-QALLFSIFNRFRNSGKGFLLLGSE 123 (149)
T ss_dssp GGCSEEEEESTTCCCSHH-HHHHHHHHHHHHHHTCCEEEEEES
T ss_pred hCCCEEEEeCccccChHH-HHHHHHHHHHHHHcCCcEEEEECC
Confidence 457889999999855433 45555666554332 332444555
No 115
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.66 E-value=0.06 Score=62.59 Aligned_cols=113 Identities=23% Similarity=0.354 Sum_probs=74.0
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhh
Q 003881 247 KPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (789)
Q Consensus 247 ~ptpiQ~~~i~~il~g--rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~ 324 (789)
.+|.-|.+++..++.- ...++.|+-|.|||.+.- .++..+.. .++|.+|+.+-+..+ .+++..
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG-~~~a~~~~----------~~~vtAP~~~a~~~l----~~~~~~ 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAG-QLISRIAG----------RAIVTAPAKASTDVL----AQFAGE 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHH-HHHHHSSS----------CEEEECSSCCSCHHH----HHHHGG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHH-HHHHHHHh----------CcEEECCCHHHHHHH----HHHhhC
Confidence 6899999999988863 347889999999996533 33333311 269999998877543 233221
Q ss_pred cCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhhcCCCc
Q 003881 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR 404 (789)
Q Consensus 325 ~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~ 404 (789)
.|-+..|..+.. .+...++||||||=.|- .+.+..++...
T Consensus 240 -------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp----~pll~~ll~~~---- 279 (671)
T 2zpa_A 240 -------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIP----APLLHQLVSRF---- 279 (671)
T ss_dssp -------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC----HHHHHHHHTTS----
T ss_pred -------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcCC----HHHHHHHHhhC----
Confidence 133456655432 23458899999998743 45666776643
Q ss_pred eEEEEeccCc
Q 003881 405 QTLLFSATMP 414 (789)
Q Consensus 405 q~ll~SAT~~ 414 (789)
..++||.|+.
T Consensus 280 ~~v~~~tTv~ 289 (671)
T 2zpa_A 280 PRTLLTTTVQ 289 (671)
T ss_dssp SEEEEEEEBS
T ss_pred CeEEEEecCC
Confidence 2588888863
No 116
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.60 E-value=0.11 Score=55.13 Aligned_cols=17 Identities=29% Similarity=0.284 Sum_probs=14.8
Q ss_pred CCCEEEEccCCChhhHH
Q 003881 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvll~a~TGsGKTla 278 (789)
+..+++.+++|+|||..
T Consensus 37 ~~~lll~G~~GtGKT~l 53 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHL 53 (324)
T ss_dssp CSSEEEECSSSSSHHHH
T ss_pred CCeEEEECCCCCcHHHH
Confidence 35899999999999965
No 117
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.52 E-value=0.27 Score=48.18 Aligned_cols=134 Identities=18% Similarity=0.164 Sum_probs=71.1
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEc--C----cHHHHHHHHHHHHHHhhhcCCeEEEEECCC
Q 003881 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA--P----TRELAHQIYLETKKFAKSHGIRVSAVYGGM 336 (789)
Q Consensus 263 rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~--P----treLa~Qi~~~~~~~~~~~~i~v~~~~gg~ 336 (789)
-.+++....|.|||.+++-.++..+ ..|.+|+|+. + +-+.. .+..+ ++.+...--|-
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~--------g~G~rV~~vQF~Kg~~~~gE~~-----~l~~L----~v~~~~~g~gf 91 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAV--------GHGKNVGVVQFIKGTWPNGERN-----LLEPH----GVEFQVMATGF 91 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHH--------HTTCCEEEEESSCCSSCCHHHH-----HHGGG----TCEEEECCTTC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH--------HCCCeEEEEEeeCCCCCccHHH-----HHHhC----CcEEEEccccc
Confidence 4788889999999998777777665 4577788882 2 21111 12222 33322111111
Q ss_pred ChHH-HHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCC--hHHHHHHHhhcCCCceEEEEeccC
Q 003881 337 SKLD-QFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGF--EPQIRSIVGQIRPDRQTLLFSATM 413 (789)
Q Consensus 337 ~~~~-~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f--~~~i~~il~~l~~~~q~ll~SAT~ 413 (789)
.... ....-...+ -..| .... ..+.-..+++|||||+-..+..++ .+.+..++...+....+|+.+--.
T Consensus 92 ~~~~~~~~~~~~~a------~~~l-~~a~-~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 92 TWETQNREADTAAC------MAVW-QHGK-RMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp CCCGGGHHHHHHHH------HHHH-HHHH-HHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred ccCCCCcHHHHHHH------HHHH-HHHH-HHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 1000 000000000 1111 1111 122235789999999987666553 355667777666666666666667
Q ss_pred cHHHHHHH
Q 003881 414 PRKVEKLA 421 (789)
Q Consensus 414 ~~~i~~l~ 421 (789)
|+.+.+++
T Consensus 164 p~~l~e~A 171 (196)
T 1g5t_A 164 HRDILDLA 171 (196)
T ss_dssp CHHHHHHC
T ss_pred cHHHHHhC
Confidence 77765554
No 118
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=94.47 E-value=0.027 Score=66.45 Aligned_cols=71 Identities=18% Similarity=0.113 Sum_probs=52.9
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhh
Q 003881 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (789)
Q Consensus 247 ~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~ 323 (789)
.+++-|.+++.. ....++|.|..|||||.+ ++.-+.+++.... -....+|+|+.|+..|.++.+.+.+...
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~-l~~ri~~ll~~~~---~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRV-ITNKIAHLIRGCG---YQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHH-HHHHHHHHHHHHC---CCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHH-HHHHHHHHHHhcC---CCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 478999999864 356899999999999986 4444455543211 1234589999999999999999888754
No 119
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.44 E-value=0.23 Score=47.10 Aligned_cols=17 Identities=35% Similarity=0.429 Sum_probs=14.7
Q ss_pred CCCEEEEccCCChhhHH
Q 003881 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvll~a~TGsGKTla 278 (789)
.+.+++.+++|+|||..
T Consensus 43 ~~~vll~G~~G~GKT~l 59 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAI 59 (187)
T ss_dssp SCEEEEESCGGGCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 46799999999999965
No 120
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.36 E-value=0.055 Score=54.46 Aligned_cols=40 Identities=10% Similarity=0.004 Sum_probs=28.4
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcH
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTR 308 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~Ptr 308 (789)
.|+-.++++++|+|||...+--+.++. ..+.+++|+-|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~--------~~g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQ--------IAQYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH--------TTTCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHH--------HCCCeEEEEeecC
Confidence 456678899999999987554444443 3466788888764
No 121
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.35 E-value=0.36 Score=49.54 Aligned_cols=16 Identities=31% Similarity=0.243 Sum_probs=14.3
Q ss_pred CCEEEEccCCChhhHH
Q 003881 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll~a~TGsGKTla 278 (789)
+.+++.+++|+|||..
T Consensus 65 ~~vLl~G~~GtGKT~l 80 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTAL 80 (272)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 4799999999999975
No 122
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.25 E-value=0.18 Score=49.12 Aligned_cols=16 Identities=25% Similarity=0.235 Sum_probs=14.6
Q ss_pred CCEEEEccCCChhhHH
Q 003881 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll~a~TGsGKTla 278 (789)
+.+++++++|+|||..
T Consensus 55 ~~~~l~G~~GtGKT~l 70 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYL 70 (202)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 6899999999999975
No 123
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.13 E-value=0.13 Score=55.52 Aligned_cols=17 Identities=35% Similarity=0.415 Sum_probs=14.9
Q ss_pred CCCEEEEccCCChhhHH
Q 003881 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvll~a~TGsGKTla 278 (789)
.+.+++++++|+|||..
T Consensus 44 ~~~vll~G~~G~GKT~l 60 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAV 60 (387)
T ss_dssp CCCEEECBCTTSSHHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 46799999999999975
No 124
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.71 E-value=0.39 Score=45.47 Aligned_cols=16 Identities=38% Similarity=0.499 Sum_probs=14.4
Q ss_pred CCEEEEccCCChhhHH
Q 003881 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll~a~TGsGKTla 278 (789)
+.+++++++|+|||..
T Consensus 44 ~~~ll~G~~G~GKT~l 59 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAI 59 (195)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CceEEECCCCCCHHHH
Confidence 6799999999999975
No 125
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=93.48 E-value=0.11 Score=62.15 Aligned_cols=78 Identities=13% Similarity=0.166 Sum_probs=66.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeeh-hhhccCCCCCccEEE
Q 003881 469 DDGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAARGLDIKSIKSVV 543 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~~rGlDI~~v~~VI 543 (789)
.+.++||.++++.-+..+++.+.+. ++.+..+||+++..+|...+..+.+|..+|+|+|. .+...+.+.++.+||
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 3568999999999888887777654 78999999999999999999999999999999995 455678899998888
Q ss_pred EEc
Q 003881 544 NFD 546 (789)
Q Consensus 544 ~~d 546 (789)
.=.
T Consensus 496 IDE 498 (780)
T 1gm5_A 496 IDE 498 (780)
T ss_dssp EES
T ss_pred ecc
Confidence 533
No 126
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.39 E-value=0.37 Score=53.41 Aligned_cols=132 Identities=17% Similarity=0.186 Sum_probs=69.8
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEc--CcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHH
Q 003881 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA--PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (789)
Q Consensus 263 rdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~--PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~ 340 (789)
.-+++++++|+|||.. +.-+..++.. .+.++++++ |.|.-+ ++.++.+....++.+.....+..
T Consensus 101 ~vIlivG~~G~GKTTt-~~kLA~~l~~-------~G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~~~~~~~d--- 166 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTT-VAKLARYFQK-------RGYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVFGNPQEKD--- 166 (443)
T ss_dssp EEEEEECCTTSSHHHH-HHHHHHHHHT-------TTCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEECCTTCCC---
T ss_pred eEEEEECcCCCCHHHH-HHHHHHHHHH-------CCCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEEecCCCCC---
Confidence 3578899999999976 3333333322 244455544 344433 34456666656665543322221
Q ss_pred HHHHHhcCCcEEEeChHHHH-HHHhhcccccCceeEEEEeccchhccC-CChHHHHHHHhhcCCCceEEEEeccCcHHHH
Q 003881 341 QFKELKAGCEIVIATPGRLI-DMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMPRKVE 418 (789)
Q Consensus 341 ~~~~l~~~~dIiV~Tp~~L~-~~l~~~~~~l~~i~~lVvDEah~m~~~-~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~ 418 (789)
|..+. +.+.. .....+++||||.+=++... .....+..+.....++.-++.+.|+......
T Consensus 167 ---------------p~~i~~~al~~--a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~ 229 (443)
T 3dm5_A 167 ---------------AIKLAKEGVDY--FKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY 229 (443)
T ss_dssp ---------------HHHHHHHHHHH--HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH
T ss_pred ---------------HHHHHHHHHHH--HHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH
Confidence 21111 11211 11124678899988653211 1233445555666677778888888765555
Q ss_pred HHHHHHh
Q 003881 419 KLAREIL 425 (789)
Q Consensus 419 ~l~~~~l 425 (789)
..+..|.
T Consensus 230 ~~a~~f~ 236 (443)
T 3dm5_A 230 NQALAFK 236 (443)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
No 127
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.38 E-value=0.31 Score=52.48 Aligned_cols=16 Identities=31% Similarity=0.293 Sum_probs=14.2
Q ss_pred CCEEEEccCCChhhHH
Q 003881 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll~a~TGsGKTla 278 (789)
+.+++.+++|+|||..
T Consensus 46 ~~vll~G~~G~GKT~l 61 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFV 61 (384)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred CcEEEECCCCCCHHHH
Confidence 5699999999999975
No 128
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.16 E-value=0.18 Score=54.35 Aligned_cols=15 Identities=27% Similarity=0.470 Sum_probs=13.7
Q ss_pred CEEEEccCCChhhHH
Q 003881 264 DIIGIAKTGSGKTAA 278 (789)
Q Consensus 264 dvll~a~TGsGKTla 278 (789)
.+++.+++|+|||..
T Consensus 46 ~~li~G~~G~GKTtl 60 (389)
T 1fnn_A 46 RATLLGRPGTGKTVT 60 (389)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 699999999999975
No 129
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.16 E-value=0.079 Score=52.76 Aligned_cols=41 Identities=17% Similarity=0.076 Sum_probs=26.3
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHH
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRE 309 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~Ptre 309 (789)
.|.=.++++++|+|||...+ -.+.... ..+.+++|+.|...
T Consensus 27 ~G~I~vitG~M~sGKTT~Ll-r~~~r~~-------~~g~kvli~kp~~D 67 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELI-RRLRRGI-------YAKQKVVVFKPAID 67 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHH-HHHHHHH-------HTTCCEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHHHH-HHHHHHH-------HcCCceEEEEeccC
Confidence 34557889999999997633 3333332 23566899988653
No 130
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=93.12 E-value=0.15 Score=64.30 Aligned_cols=72 Identities=26% Similarity=0.208 Sum_probs=52.3
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHH
Q 003881 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 246 ~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~ 321 (789)
.++|+-|.++|..- ++++++.|..|||||.+.+--++..+..... .-....+|+|++|+..|..+.+.+...
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~--~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEEN--PIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSS--CCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCC--CCCccceEEEeccHHHHHHHHHHHHHH
Confidence 46899999998653 7899999999999998744444444433210 012346899999999999998887764
No 131
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.01 E-value=0.26 Score=54.79 Aligned_cols=44 Identities=16% Similarity=0.400 Sum_probs=25.3
Q ss_pred ceeEEEEeccchhccC-CChHHHHHHHhhc-CCCceEEEEeccCcH
Q 003881 372 RVTYLVLDEADRMFDL-GFEPQIRSIVGQI-RPDRQTLLFSATMPR 415 (789)
Q Consensus 372 ~i~~lVvDEah~m~~~-~f~~~i~~il~~l-~~~~q~ll~SAT~~~ 415 (789)
...+|||||+|.+... .....+..++..+ ....++|+.|...+.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~ 239 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQ 239 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGG
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHH
Confidence 5678999999998753 1233344444443 334555555444333
No 132
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.99 E-value=0.67 Score=48.95 Aligned_cols=51 Identities=18% Similarity=0.273 Sum_probs=29.9
Q ss_pred CCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHH-----cCCCEEEEccCCChhhHH
Q 003881 222 RPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIIL-----SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il-----~grdvll~a~TGsGKTla 278 (789)
.|-.+|.++.-...+.+.|...-. .|. ..|.++ ..+.+|+.+|+|+|||..
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~l 67 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYL 67 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHH
T ss_pred CCCCCHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 344678888766666666654310 000 001111 125799999999999975
No 133
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.98 E-value=0.67 Score=44.98 Aligned_cols=39 Identities=18% Similarity=0.206 Sum_probs=23.5
Q ss_pred CceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEe
Q 003881 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 371 ~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~S 410 (789)
....+|||||+|.+... ....+..++........+|+.+
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~ 139 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSC 139 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45678999999986532 2334455555544455555444
No 134
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.49 E-value=0.14 Score=52.86 Aligned_cols=53 Identities=21% Similarity=0.251 Sum_probs=30.2
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHH-HHHHHHH--HcCCCEEEEccCCChhhHH
Q 003881 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQ-CQALPII--LSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 223 pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ-~~~i~~i--l~grdvll~a~TGsGKTla 278 (789)
|-.+|+++.-....++.|...-. .+.+ .+.+..+ ...+.+++.+++|+|||..
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLL 67 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 44568887666666666653210 0000 0111111 2446799999999999964
No 135
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=92.46 E-value=0.23 Score=54.34 Aligned_cols=76 Identities=14% Similarity=0.202 Sum_probs=64.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHH---cCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeeh-hhh---ccCCCCCccE
Q 003881 469 DDGDVLVFASKKTTVDEIESQLAQ---KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA---RGLDIKSIKS 541 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~---~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~~---rGlDI~~v~~ 541 (789)
...++||.+|++.-+..+++.+.. .++.+..+||+.+..++...+..+..|..+|+|+|. .+. .-+++..+.+
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 456899999999999999999988 578999999999999999999999999999999994 231 1256667787
Q ss_pred EEE
Q 003881 542 VVN 544 (789)
Q Consensus 542 VI~ 544 (789)
||.
T Consensus 143 iVi 145 (414)
T 3oiy_A 143 VFV 145 (414)
T ss_dssp EEE
T ss_pred EEE
Confidence 774
No 136
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=92.27 E-value=0.21 Score=53.32 Aligned_cols=39 Identities=15% Similarity=0.236 Sum_probs=25.8
Q ss_pred cHHHHHHHHHHH----cCC---CEEEEccCCChhhHHHHHHHHHHHh
Q 003881 249 TSIQCQALPIIL----SGR---DIIGIAKTGSGKTAAFVLPMIVHIM 288 (789)
Q Consensus 249 tpiQ~~~i~~il----~gr---dvll~a~TGsGKTla~llpil~~l~ 288 (789)
.|+|.+++..+. +++ .+|+.|+.|+|||.. +..+...+.
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~-a~~la~~l~ 49 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDAL-IYALSRYLL 49 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHH-HHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHH-HHHHHHHHh
Confidence 466666665543 443 389999999999975 444445554
No 137
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.03 E-value=0.16 Score=49.79 Aligned_cols=39 Identities=10% Similarity=0.040 Sum_probs=26.3
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCc
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~Pt 307 (789)
.++=.++.+++|+|||.- ++-++.+... .+.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~-Ll~~i~n~~~-------~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTE-LMRRVRRFQI-------AQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHH-HHHHHHHHHH-------TTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHH-HHHHHHHHHH-------cCCeEEEEccc
Confidence 356678899999999965 4444443322 24568888776
No 138
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.56 E-value=0.19 Score=49.97 Aligned_cols=18 Identities=22% Similarity=0.117 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCChhhHH
Q 003881 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla 278 (789)
.++.+++.+++|+|||..
T Consensus 51 ~~~~~ll~G~~G~GKT~l 68 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHL 68 (242)
T ss_dssp SCSEEEEECSTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 357899999999999974
No 139
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.50 E-value=0.59 Score=49.22 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=15.2
Q ss_pred CCCEEEEccCCChhhHH
Q 003881 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvll~a~TGsGKTla 278 (789)
++++++.+++|+|||..
T Consensus 152 ~~~lll~G~~GtGKT~L 168 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYL 168 (308)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 57899999999999964
No 140
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=91.43 E-value=0.86 Score=47.65 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=29.5
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HHcCCCEEEEccCCChhhHH
Q 003881 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPI-ILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 223 pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~-il~grdvll~a~TGsGKTla 278 (789)
|-.+|+++.-...+.+.|...- ..|..+....... +..++.+++.+|+|+|||+.
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v-~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~l 65 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELV-QYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 65 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHH-HHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH-HHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHH
Confidence 4467888866666665554320 0000000000000 12356799999999999974
No 141
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.42 E-value=0.51 Score=50.51 Aligned_cols=17 Identities=41% Similarity=0.481 Sum_probs=15.0
Q ss_pred CCCEEEEccCCChhhHH
Q 003881 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvll~a~TGsGKTla 278 (789)
++.+++.++.|+|||..
T Consensus 45 ~~~vli~G~~G~GKTtl 61 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAV 61 (386)
T ss_dssp CCCEEEEECTTSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46799999999999975
No 142
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=91.35 E-value=0.48 Score=49.95 Aligned_cols=41 Identities=20% Similarity=0.231 Sum_probs=25.0
Q ss_pred CceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEec
Q 003881 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSA 411 (789)
Q Consensus 371 ~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SA 411 (789)
....+|||||+|.|........+..++...+...++|+.+.
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n 144 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITAN 144 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEES
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 36789999999997621223445555555555555555443
No 143
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.27 E-value=0.46 Score=43.83 Aligned_cols=19 Identities=11% Similarity=0.184 Sum_probs=16.5
Q ss_pred HcCCCEEEEccCCChhhHH
Q 003881 260 LSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 260 l~grdvll~a~TGsGKTla 278 (789)
....++++.+++|+|||..
T Consensus 22 ~~~~~vll~G~~GtGKt~l 40 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTG 40 (145)
T ss_dssp TCCSCEEEESSTTSSHHHH
T ss_pred CCCCCEEEECCCCCCHHHH
Confidence 4667999999999999965
No 144
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.03 E-value=0.18 Score=46.62 Aligned_cols=20 Identities=10% Similarity=0.016 Sum_probs=17.0
Q ss_pred HHcCCCEEEEccCCChhhHH
Q 003881 259 ILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 259 il~grdvll~a~TGsGKTla 278 (789)
+....++++.+++|+|||..
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 44668999999999999964
No 145
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=90.85 E-value=0.24 Score=51.81 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=14.3
Q ss_pred CCEEEEccCCChhhHH
Q 003881 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll~a~TGsGKTla 278 (789)
.++++.+++|+|||..
T Consensus 68 ~~vll~G~~GtGKT~l 83 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTV 83 (309)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4699999999999975
No 146
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=90.65 E-value=3.1 Score=40.57 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=13.4
Q ss_pred CEEEEccCCChhhHH
Q 003881 264 DIIGIAKTGSGKTAA 278 (789)
Q Consensus 264 dvll~a~TGsGKTla 278 (789)
.+++.++.|+|||..
T Consensus 47 ~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 47 AYLFSGTRGVGKTSI 61 (250)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 589999999999975
No 147
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=90.46 E-value=1.7 Score=45.95 Aligned_cols=16 Identities=31% Similarity=0.347 Sum_probs=14.5
Q ss_pred CCEEEEccCCChhhHH
Q 003881 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll~a~TGsGKTla 278 (789)
..+++.+++|+|||..
T Consensus 56 ~~vll~G~~GtGKT~l 71 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTL 71 (338)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECcCCCCHHHH
Confidence 5899999999999975
No 148
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.41 E-value=0.62 Score=49.59 Aligned_cols=43 Identities=12% Similarity=0.300 Sum_probs=27.8
Q ss_pred cCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEeccC
Q 003881 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (789)
Q Consensus 370 l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~ 413 (789)
.....+|||||+|. ++......+..++...+....+|+.|..+
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 34678999999998 44334456667777666666666665544
No 149
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=90.03 E-value=1.1 Score=42.10 Aligned_cols=73 Identities=19% Similarity=0.332 Sum_probs=52.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHH---Hhc-CCcEEEeChHHHHHHHhhcccccCce
Q 003881 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (789)
Q Consensus 298 gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~---l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i 373 (789)
+.++||.|+++..+..+.+.+... ++.+..++|+.+..+.... +.. ...|+|+|. .+ ...+++..+
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gld~~~~ 104 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VA-ARGIDIENI 104 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GG-TTTCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hh-hcCCchhcC
Confidence 456899999999998888777665 7899999999876554332 333 478999993 23 234567778
Q ss_pred eEEEEec
Q 003881 374 TYLVLDE 380 (789)
Q Consensus 374 ~~lVvDE 380 (789)
++||.-.
T Consensus 105 ~~Vi~~~ 111 (163)
T 2hjv_A 105 SLVINYD 111 (163)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 8887644
No 150
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=89.76 E-value=1.4 Score=41.92 Aligned_cols=71 Identities=20% Similarity=0.220 Sum_probs=52.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHH---Hhc-CCcEEEeChHHHHHHHhhcccccCce
Q 003881 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (789)
Q Consensus 298 gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~---l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i 373 (789)
..++||.|+++..+..+...+... ++.+..++|+.+..+.... +.. ...|+|||. .+ ...+++..+
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~-~~Gid~~~~ 103 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VC-ARGIDVKQV 103 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SC-CTTTCCTTE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----ch-hcCCCcccC
Confidence 457999999999998887777654 7899999999876554332 333 479999993 22 234567788
Q ss_pred eEEEE
Q 003881 374 TYLVL 378 (789)
Q Consensus 374 ~~lVv 378 (789)
.+||.
T Consensus 104 ~~Vi~ 108 (175)
T 2rb4_A 104 TIVVN 108 (175)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 88885
No 151
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=89.69 E-value=2.1 Score=41.42 Aligned_cols=71 Identities=20% Similarity=0.266 Sum_probs=52.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHH---Hh-cCCcEEEeChHHHHHHHhhcccccCce
Q 003881 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LK-AGCEIVIATPGRLIDMLKMKALTMSRV 373 (789)
Q Consensus 298 gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~---l~-~~~dIiV~Tp~~L~~~l~~~~~~l~~i 373 (789)
++++||.|+++..+..+...+... ++.+..++|+.+..+.... +. ....|+|+| +.+. ..+++..+
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~-~Gldi~~v 123 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVAS-KGLDFPAI 123 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHH-TTCCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchh-cCCCcccC
Confidence 456999999999999888877765 7899999999876554332 23 258999999 2332 34567778
Q ss_pred eEEEE
Q 003881 374 TYLVL 378 (789)
Q Consensus 374 ~~lVv 378 (789)
++||.
T Consensus 124 ~~VI~ 128 (191)
T 2p6n_A 124 QHVIN 128 (191)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 87776
No 152
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=89.40 E-value=0.45 Score=50.87 Aligned_cols=114 Identities=16% Similarity=0.142 Sum_probs=54.5
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHH
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~ 341 (789)
|.-+++.|++|+|||.. ++-++.++.. .+..++|+..- .-..|+...+..... ++....+..|.-....
T Consensus 46 G~LiiIaG~pG~GKTt~-al~ia~~~a~-------~g~~Vl~fSlE-ms~~ql~~Rlls~~~--~v~~~~l~~g~Ls~~e 114 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSL-MMNMVLSALN-------DDRGVAVFSLE-MSAEQLALRALSDLT--SINMHDLESGRLDDDQ 114 (338)
T ss_dssp TCEEEEEECTTSCHHHH-HHHHHHHHHH-------TTCEEEEEESS-SCHHHHHHHHHHHHH--CCCHHHHHHTCCCHHH
T ss_pred CcEEEEEeCCCCCHHHH-HHHHHHHHHH-------cCCeEEEEeCC-CCHHHHHHHHHHHhh--CCCHHHHhcCCCCHHH
Confidence 45588899999999974 5555555433 24557776442 223344444332211 1111101111111222
Q ss_pred HHHHh------cCCcEEE-eC----hHHHHHHHhhcccccCceeEEEEeccchhcc
Q 003881 342 FKELK------AGCEIVI-AT----PGRLIDMLKMKALTMSRVTYLVLDEADRMFD 386 (789)
Q Consensus 342 ~~~l~------~~~dIiV-~T----p~~L~~~l~~~~~~l~~i~~lVvDEah~m~~ 386 (789)
+..+. ....|.| .+ +..|...+.+-......+.+||||-.+.|..
T Consensus 115 ~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~ 170 (338)
T 4a1f_A 115 WENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSG 170 (338)
T ss_dssp HHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCT
T ss_pred HHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhcC
Confidence 22211 1234555 33 3444444432111112689999999998653
No 153
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=89.31 E-value=2.1 Score=42.00 Aligned_cols=72 Identities=21% Similarity=0.291 Sum_probs=55.0
Q ss_pred CCCEEEEecccccHHHHHHHHHHc-----CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeeh-hh-----hccCCCCC
Q 003881 470 DGDVLVFASKKTTVDEIESQLAQK-----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA-----ARGLDIKS 538 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~-----~rGlDI~~ 538 (789)
..++||.|+++.-+..+++.+.+. ++.+..++|+.+...... .+..+..+|+|+|. .+ ...+++..
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 348999999999999998888775 688999999998765543 34556789999994 22 23467778
Q ss_pred ccEEEE
Q 003881 539 IKSVVN 544 (789)
Q Consensus 539 v~~VI~ 544 (789)
+++||.
T Consensus 159 ~~~lVi 164 (220)
T 1t6n_A 159 IKHFIL 164 (220)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888775
No 154
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=89.26 E-value=5 Score=40.24 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=14.6
Q ss_pred CCCEEEEccCCChhhHH
Q 003881 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvll~a~TGsGKTla 278 (789)
.+.+++.+++|+|||..
T Consensus 39 ~~~vll~G~~GtGKT~l 55 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLL 55 (262)
T ss_dssp CCEEEEESCTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 35789999999999964
No 155
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=89.02 E-value=4.7 Score=42.40 Aligned_cols=50 Identities=20% Similarity=0.281 Sum_probs=29.1
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHH-----cCCCEEEEccCCChhhHH
Q 003881 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIIL-----SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 223 pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il-----~grdvll~a~TGsGKTla 278 (789)
|-.+|++++-...+.+.|...-. .|.+ .|.++ ..+.+|+.+|+|+|||..
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYL 61 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCceEEEECCCCccHHHH
Confidence 44678888766666666543200 0000 01111 126799999999999964
No 156
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.84 E-value=0.53 Score=51.38 Aligned_cols=54 Identities=20% Similarity=0.297 Sum_probs=32.4
Q ss_pred CCCCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHH
Q 003881 222 RPVKTFEDCGFSTQLMHAISKQ---GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~---g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla 278 (789)
.|-.+|++.+=-....+.|... .+..|--++.-.+ ---+.+|+.+|+|+|||+.
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHH
Confidence 3557899997666666666543 1112222221111 1237899999999999974
No 157
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=88.73 E-value=3.1 Score=45.04 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=15.1
Q ss_pred CCCEEEEccCCChhhHH
Q 003881 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvll~a~TGsGKTla 278 (789)
.+.+|+.+++|+|||..
T Consensus 148 ~~~vLL~GppGtGKT~l 164 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTML 164 (389)
T ss_dssp CSEEEEESSTTSCHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46899999999999975
No 158
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=88.65 E-value=0.55 Score=58.30 Aligned_cols=96 Identities=16% Similarity=0.185 Sum_probs=71.5
Q ss_pred ecCCCcccHHHHHHh-cCCCCCCCCEEEEecccccHHHHHHHHHH---cCCceeeccCCCCHHHHHHHHHHhhcCCcceE
Q 003881 449 VIPSDAEKLPWLLEK-LPGMIDDGDVLVFASKKTTVDEIESQLAQ---KGFKAAALHGDKDQASRMEILQKFKSGVYHVL 524 (789)
Q Consensus 449 ~~~~~~~k~~~L~~~-L~~~~~~~kvLVF~~s~~~a~~l~~~L~~---~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VL 524 (789)
..+....|-...+-. +.......++||.++++.-+.++++.|.. .++.+..+||+++..+|...+..+..|..+||
T Consensus 99 ~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~Il 178 (1104)
T 4ddu_A 99 VAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHIL 178 (1104)
T ss_dssp CCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEE
T ss_pred EeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEE
Confidence 334455554432222 22123456899999999999999999988 56799999999999999999999999999999
Q ss_pred Eeeh-hhhc---cCCCCCccEEEE
Q 003881 525 IATD-VAAR---GLDIKSIKSVVN 544 (789)
Q Consensus 525 VaT~-v~~r---GlDI~~v~~VI~ 544 (789)
|+|. .+.. -+++..+.+||.
T Consensus 179 V~Tp~rL~~~l~~l~~~~l~~lVi 202 (1104)
T 4ddu_A 179 VFSTQFVSKNREKLSQKRFDFVFV 202 (1104)
T ss_dssp EEEHHHHHHSHHHHHTSCCSEEEE
T ss_pred EECHHHHHHHHHhhcccCcCEEEE
Confidence 9994 2311 255678888885
No 159
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=88.64 E-value=1.8 Score=45.11 Aligned_cols=39 Identities=18% Similarity=0.257 Sum_probs=23.6
Q ss_pred CceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEe
Q 003881 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 371 ~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~S 410 (789)
....+|||||+|.+... ....+..++...+....+|+.+
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45779999999987532 1234455555545555555544
No 160
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=88.00 E-value=1.4 Score=54.94 Aligned_cols=99 Identities=10% Similarity=0.132 Sum_probs=74.9
Q ss_pred EEEecCCCcccHHHHH-HhcCCCCCCCCEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCC
Q 003881 446 VVHVIPSDAEKLPWLL-EKLPGMIDDGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGV 520 (789)
Q Consensus 446 ~~~~~~~~~~k~~~L~-~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~ 520 (789)
.+...+....|-...+ ..+.....+.++||.|+++.-+...++.|.+. ++.+..+++..+..++..++..+..|.
T Consensus 627 ~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~ 706 (1151)
T 2eyq_A 627 RLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGK 706 (1151)
T ss_dssp EEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCC
Confidence 3444555666654322 11111224568999999999888888887653 578999999999999999999999999
Q ss_pred cceEEee-hhhhccCCCCCccEEEE
Q 003881 521 YHVLIAT-DVAARGLDIKSIKSVVN 544 (789)
Q Consensus 521 ~~VLVaT-~v~~rGlDI~~v~~VI~ 544 (789)
.+|+|+| ..+...+.+.++.+||.
T Consensus 707 ~dIvV~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 707 IDILIGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp CSEEEECTHHHHSCCCCSSEEEEEE
T ss_pred CCEEEECHHHHhCCccccccceEEE
Confidence 9999999 56667788888888875
No 161
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=87.71 E-value=1.8 Score=42.60 Aligned_cols=71 Identities=17% Similarity=0.270 Sum_probs=52.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHH---hc-CCcEEEeChHHHHHHHhhcccccCce
Q 003881 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL---KA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (789)
Q Consensus 298 gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l---~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i 373 (789)
+.++||.|+++.-+..+.+.+.+. ++.+..++|+.+..++...+ .. ..+|+|||. .+ ...+++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~-~~Gidi~~v 100 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VA-ARGLDIPQV 100 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TT-TCSSSCCCB
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hh-hcCCCCccC
Confidence 456999999999998888777765 78999999998876554333 33 478999992 33 234567788
Q ss_pred eEEEE
Q 003881 374 TYLVL 378 (789)
Q Consensus 374 ~~lVv 378 (789)
.+||.
T Consensus 101 ~~Vi~ 105 (212)
T 3eaq_A 101 DLVVH 105 (212)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88774
No 162
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=87.58 E-value=1.8 Score=40.56 Aligned_cols=73 Identities=18% Similarity=0.315 Sum_probs=52.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHH---Hhc-CCcEEEeChHHHHHHHhhcccccCce
Q 003881 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (789)
Q Consensus 298 gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~---l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i 373 (789)
+.++||.|+++..+..+...+... ++.+..++|+.+..+.... +.. ...|+|||. .+ ...+++..+
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~G~d~~~~ 99 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LL-ARGIDVQQV 99 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GG-TTTCCCCSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hh-hcCCCcccC
Confidence 456999999999998887777664 7889999999876554332 232 478999993 22 234567778
Q ss_pred eEEEEec
Q 003881 374 TYLVLDE 380 (789)
Q Consensus 374 ~~lVvDE 380 (789)
.+||.-.
T Consensus 100 ~~Vi~~~ 106 (165)
T 1fuk_A 100 SLVINYD 106 (165)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 8877643
No 163
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=87.47 E-value=2.2 Score=47.39 Aligned_cols=115 Identities=17% Similarity=0.142 Sum_probs=54.3
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEE-ECCCChH
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAV-YGGMSKL 339 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~-~gg~~~~ 339 (789)
.|.-+++.|++|+|||.. ++-++.++... .+..++++..-- -..|+...+.... .++....+ .|... .
T Consensus 202 ~G~liiI~G~pG~GKTtl-~l~ia~~~~~~------~g~~Vl~~s~E~-s~~~l~~r~~~~~--~~~~~~~l~~g~l~-~ 270 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAF-ALNIAQNVATK------TNENVAIFSLEM-SAQQLVMRMLCAE--GNINAQNLRTGKLT-P 270 (454)
T ss_dssp TTCEEEEECCTTSCHHHH-HHHHHHHHHHH------SSCCEEEEESSS-CHHHHHHHHHHHH--HTCCHHHHHTSCCC-H
T ss_pred CCCEEEEECCCCCCHHHH-HHHHHHHHHHh------CCCcEEEEECCC-CHHHHHHHHHHHH--cCCCHHHHhcCCCC-H
Confidence 345688899999999974 44444444321 233466664321 1233433322110 11111000 11122 1
Q ss_pred HHHHHH------hcCCcEEEe-----ChHHHHHHHhhcccccCceeEEEEeccchhccC
Q 003881 340 DQFKEL------KAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL 387 (789)
Q Consensus 340 ~~~~~l------~~~~dIiV~-----Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~ 387 (789)
..+..+ .....+.+. |.+.+...+..-. .-..+++||||+.+.|...
T Consensus 271 ~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~-~~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 271 EDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLK-QESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp HHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHH-TTTCCCEEEEECGGGSCCS
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH-HHcCCCEEEEccHHHhccC
Confidence 222111 112445553 4455554443211 1235889999999988743
No 164
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=87.22 E-value=3.2 Score=41.03 Aligned_cols=91 Identities=16% Similarity=0.143 Sum_probs=61.7
Q ss_pred ecCCCcccHHH----HHHhcCCCCCCCCEEEEecccccHHHHHHHHHHc-----CCceeeccCCCCHHHHHHHHHHhhcC
Q 003881 449 VIPSDAEKLPW----LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK-----GFKAAALHGDKDQASRMEILQKFKSG 519 (789)
Q Consensus 449 ~~~~~~~k~~~----L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~~~~~eR~~~l~~F~~G 519 (789)
..+....|-.. ++..+.......++||.|+++.-+..+.+.+... ++.+..++|+....++...+ .
T Consensus 67 ~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~ 141 (230)
T 2oxc_A 67 QAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----K 141 (230)
T ss_dssp ECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----T
T ss_pred ECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----c
Confidence 34455566533 2333333233468999999999999999988774 67889999999876655443 2
Q ss_pred CcceEEeeh-hhh-----ccCCCCCccEEEE
Q 003881 520 VYHVLIATD-VAA-----RGLDIKSIKSVVN 544 (789)
Q Consensus 520 ~~~VLVaT~-v~~-----rGlDI~~v~~VI~ 544 (789)
..+|+|+|. .+. ..+++..+++||.
T Consensus 142 ~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 142 KCHIAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp SCSEEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred CCCEEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 578999994 221 3466777777774
No 165
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=87.13 E-value=1.6 Score=41.38 Aligned_cols=73 Identities=15% Similarity=0.140 Sum_probs=52.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHH---Hhc-CCcEEEeChHHHHHHHhhcccccCce
Q 003881 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (789)
Q Consensus 298 gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~---l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i 373 (789)
+.++||.|+++..+..+++.+... ++.+..++|+.+..+.... +.. ...|+|||. .+ ...+++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~-~~Gldi~~~ 100 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LF-GRGMDIERV 100 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----CC-STTCCGGGC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-----ch-hcCcchhhC
Confidence 456999999999998887777665 7899999999876554333 232 478999993 22 234567778
Q ss_pred eEEEEec
Q 003881 374 TYLVLDE 380 (789)
Q Consensus 374 ~~lVvDE 380 (789)
.+||.-.
T Consensus 101 ~~Vi~~d 107 (172)
T 1t5i_A 101 NIAFNYD 107 (172)
T ss_dssp SEEEESS
T ss_pred CEEEEEC
Confidence 8887643
No 166
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=86.96 E-value=16 Score=37.96 Aligned_cols=52 Identities=13% Similarity=0.257 Sum_probs=29.1
Q ss_pred ChHHHHHHHhhcccccCceeEEEEeccchhcc---CCChHHHHHHHhhcCCCceEEEEe
Q 003881 355 TPGRLIDMLKMKALTMSRVTYLVLDEADRMFD---LGFEPQIRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 355 Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~---~~f~~~i~~il~~l~~~~q~ll~S 410 (789)
+...++..+..... .--+|||||+|.+.. ..+...+..++... +...+|+.+
T Consensus 123 ~~~~l~~~l~~~~~---~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~g 177 (357)
T 2fna_A 123 SFANLLESFEQASK---DNVIIVLDEAQELVKLRGVNLLPALAYAYDNL-KRIKFIMSG 177 (357)
T ss_dssp CHHHHHHHHHHTCS---SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHC-TTEEEEEEE
T ss_pred hHHHHHHHHHhcCC---CCeEEEEECHHHhhccCchhHHHHHHHHHHcC-CCeEEEEEc
Confidence 34455555543211 244799999999864 35666666665543 244444443
No 167
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.84 E-value=1 Score=47.69 Aligned_cols=40 Identities=20% Similarity=0.208 Sum_probs=24.6
Q ss_pred CceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEec
Q 003881 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSA 411 (789)
Q Consensus 371 ~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SA 411 (789)
....+|||||+|.+... ....+..++...+....+|+.+.
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEeC
Confidence 35679999999987532 22345555665555555555443
No 168
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=86.48 E-value=3 Score=44.33 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=13.2
Q ss_pred CEEEEccCCChhhHH
Q 003881 264 DIIGIAKTGSGKTAA 278 (789)
Q Consensus 264 dvll~a~TGsGKTla 278 (789)
.+++.|+.|+|||..
T Consensus 40 ~~ll~G~~G~GKT~l 54 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSI 54 (373)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378999999999975
No 169
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=86.18 E-value=3.6 Score=40.77 Aligned_cols=50 Identities=18% Similarity=0.168 Sum_probs=28.7
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHH
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETK 319 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~ 319 (789)
.|.-+++++++|+|||.. ++-++..+.. .+..++++.-. ....++.+.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl-~~~~~~~~~~-------~~~~v~~~~~e-~~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIF-SQQFLWNGLK-------MGEPGIYVALE-EHPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHH-HHHHHHHHHH-------TTCCEEEEESS-SCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHH-HHHHHHHHHh-------cCCeEEEEEcc-CCHHHHHHHHH
Confidence 456789999999999975 3434444332 13346666432 23344444443
No 170
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=86.12 E-value=2 Score=47.50 Aligned_cols=115 Identities=22% Similarity=0.110 Sum_probs=54.6
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHH
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~ 341 (789)
|.-++++|++|+|||.. ++-+..++... .+..++++..- .-..|+...+..... ++....+..|.-....
T Consensus 200 G~l~ii~G~pg~GKT~l-al~ia~~~a~~------~g~~vl~~slE-~~~~~l~~R~~~~~~--~i~~~~l~~g~l~~~~ 269 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAF-ALTIAQNAALK------EGVGVGIYSLE-MPAAQLTLRMMCSEA--RIDMNRVRLGQLTDRD 269 (444)
T ss_dssp TCEEEEEECTTSCHHHH-HHHHHHHHHHT------TCCCEEEEESS-SCHHHHHHHHHHHHT--TCCTTTCCGGGCCHHH
T ss_pred CcEEEEEeCCCCCHHHH-HHHHHHHHHHh------CCCeEEEEECC-CCHHHHHHHHHHHHc--CCCHHHHhCCCCCHHH
Confidence 35678899999999964 55555554321 13346666432 222344433322111 2211101111111222
Q ss_pred HHHHh------cCCcEEEe-----ChHHHHHHHhhcccccCceeEEEEeccchhccC
Q 003881 342 FKELK------AGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL 387 (789)
Q Consensus 342 ~~~l~------~~~dIiV~-----Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~ 387 (789)
+..+. ....|.|. |...|...+.+-. .-..+++||||..+.|...
T Consensus 270 ~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~-~~~~~~lIvID~l~~~~~~ 325 (444)
T 2q6t_A 270 FSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLV-SQNQVGLIIIDYLQLMSGP 325 (444)
T ss_dssp HHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHH-HHSCCCEEEEECGGGCBCC
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH-HHcCCCEEEEcChhhcCCC
Confidence 22211 12445553 4455544443211 1125889999999988643
No 171
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=86.00 E-value=1.2 Score=51.45 Aligned_cols=79 Identities=20% Similarity=0.224 Sum_probs=62.7
Q ss_pred EEecCCCcccHHH-HHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHh--hcCCcce
Q 003881 447 VHVIPSDAEKLPW-LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKF--KSGVYHV 523 (789)
Q Consensus 447 ~~~~~~~~~k~~~-L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F--~~G~~~V 523 (789)
+...+....|-.. ++-.+. ..+.+||.++++.-+....+.|...++.+..++|+++..++..++..+ ..+..+|
T Consensus 63 lv~~pTGsGKTl~~~lpal~---~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~I 139 (591)
T 2v1x_A 63 FLVMPTGGGKSLCYQLPALC---SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKL 139 (591)
T ss_dssp EEECCTTSCTTHHHHHHHHT---SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCE
T ss_pred EEEECCCChHHHHHHHHHHH---cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCE
Confidence 3444555555432 223332 357899999999999999999999999999999999999999998888 5788999
Q ss_pred EEeeh
Q 003881 524 LIATD 528 (789)
Q Consensus 524 LVaT~ 528 (789)
||+|.
T Consensus 140 lv~Tp 144 (591)
T 2v1x_A 140 IYVTP 144 (591)
T ss_dssp EEECH
T ss_pred EEECh
Confidence 99996
No 172
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=85.57 E-value=1.4 Score=47.38 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=14.5
Q ss_pred CCEEEEccCCChhhHH
Q 003881 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll~a~TGsGKTla 278 (789)
+.+|+.+|+|+|||+.
T Consensus 85 ~~iLL~GppGtGKT~l 100 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYL 100 (355)
T ss_dssp CCEEEECSTTSCHHHH
T ss_pred ceEEEECCCCCcHHHH
Confidence 5799999999999975
No 173
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=85.56 E-value=0.87 Score=49.36 Aligned_cols=16 Identities=38% Similarity=0.551 Sum_probs=13.3
Q ss_pred CCEEE--EccCCChhhHH
Q 003881 263 RDIIG--IAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll--~a~TGsGKTla 278 (789)
..+++ .++.|+|||..
T Consensus 51 ~~~li~i~G~~G~GKT~L 68 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTL 68 (412)
T ss_dssp EEEEEECTTCCSSSHHHH
T ss_pred CEEEEeCcCcCCCCHHHH
Confidence 45777 89999999975
No 174
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=85.34 E-value=3.8 Score=40.50 Aligned_cols=18 Identities=22% Similarity=0.180 Sum_probs=15.1
Q ss_pred cCCCEEEEccCCChhhHH
Q 003881 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla 278 (789)
.|.-+++.+++|+|||..
T Consensus 23 ~G~~~~i~G~~GsGKTtl 40 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQI 40 (243)
T ss_dssp TTSEEEEECCTTSSHHHH
T ss_pred CCeEEEEECCCCCcHHHH
Confidence 346789999999999975
No 175
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=85.23 E-value=3.4 Score=43.82 Aligned_cols=136 Identities=15% Similarity=0.179 Sum_probs=70.3
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHH
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~ 341 (789)
+.-+.+++++|+|||.. +..|..++.. ..+...|+-+++...+. .+.+..+....++.++....+......
T Consensus 129 g~vi~lvG~nGaGKTTl--l~~Lag~l~~-----~~g~V~l~g~D~~r~~a--~eql~~~~~~~gv~~v~q~~~~~p~~~ 199 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTT--IAKLANWLKN-----HGFSVVIAASDTFRAGA--IEQLEEHAKRIGVKVIKHSYGADPAAV 199 (328)
T ss_dssp SEEEEEECCTTSSHHHH--HHHHHHHHHH-----TTCCEEEEEECCSSTTH--HHHHHHHHHHTTCEEECCCTTCCHHHH
T ss_pred CeEEEEECCCCCCHHHH--HHHHHHHHHh-----cCCEEEEEeecccccch--HHHHHHHHHHcCceEEeccccCCHHHH
Confidence 45678899999999974 4445544431 22333344445432211 122333444445544332222221111
Q ss_pred HHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhc-cCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHH
Q 003881 342 FKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF-DLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKL 420 (789)
Q Consensus 342 ~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~-~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l 420 (789)
+.+.+... .....+++++|.+-++. +......+..+...+.++..++++.++....+...
T Consensus 200 -----------------v~e~l~~~--~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~ 260 (328)
T 3e70_C 200 -----------------AYDAIQHA--KARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQ 260 (328)
T ss_dssp -----------------HHHHHHHH--HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHH
T ss_pred -----------------HHHHHHHH--HhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHH
Confidence 11111100 01235678899887643 22344555566666677888888988877776666
Q ss_pred HHHHh
Q 003881 421 AREIL 425 (789)
Q Consensus 421 ~~~~l 425 (789)
++.+.
T Consensus 261 ~~~~~ 265 (328)
T 3e70_C 261 ARQFN 265 (328)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 176
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=84.82 E-value=4 Score=43.51 Aligned_cols=93 Identities=20% Similarity=0.266 Sum_probs=63.8
Q ss_pred ecCCCcccHHH----HHHhcCCCCCCCCEEEEecccccHHHHHHHHHHc-----CCceeeccCCCCHHHHHHHHHHhhcC
Q 003881 449 VIPSDAEKLPW----LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK-----GFKAAALHGDKDQASRMEILQKFKSG 519 (789)
Q Consensus 449 ~~~~~~~k~~~----L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~~~~~eR~~~l~~F~~G 519 (789)
..+....|-.. ++..+.......++||.|+++.-+..+++.+.+. ++.+..++|+.+....... +..+
T Consensus 51 ~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~ 127 (391)
T 1xti_A 51 QAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKN 127 (391)
T ss_dssp ECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHS
T ss_pred ECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcC
Confidence 34445555432 2333333333458999999999999998888775 7889999999987665543 4457
Q ss_pred CcceEEeeh-hh-----hccCCCCCccEEEE
Q 003881 520 VYHVLIATD-VA-----ARGLDIKSIKSVVN 544 (789)
Q Consensus 520 ~~~VLVaT~-v~-----~rGlDI~~v~~VI~ 544 (789)
..+|+|+|. .+ ...+++..+.+||.
T Consensus 128 ~~~iiv~T~~~l~~~~~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 128 CPHIVVGTPGRILALARNKSLNLKHIKHFIL 158 (391)
T ss_dssp CCSEEEECHHHHHHHHHTTSSCCTTCSEEEE
T ss_pred CCCEEEECHHHHHHHHHcCCccccccCEEEE
Confidence 789999993 22 23467778888774
No 177
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.70 E-value=9.4 Score=41.93 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=31.3
Q ss_pred CCCCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHH
Q 003881 222 RPVKTFEDCGFSTQLMHAISKQ---GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~---g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla 278 (789)
+|-.+|++.+--..+.+.|... .+..|--++...+ -.-+.+|+.+|+|+|||+.
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPGTGKTML 222 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTTTHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCCCCHHHH
Confidence 4557899987666666555432 1111111111111 1236799999999999974
No 178
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=84.51 E-value=2.1 Score=45.86 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=15.0
Q ss_pred CCCEEEEccCCChhhHH
Q 003881 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvll~a~TGsGKTla 278 (789)
.+.+|+.+++|+|||..
T Consensus 117 ~~~vLl~GppGtGKT~l 133 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLI 133 (357)
T ss_dssp CSEEEEESSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46799999999999975
No 179
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=84.27 E-value=0.63 Score=50.16 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHH
Q 003881 581 RFAGELVNSLIAAGQNVSMELMDLAM 606 (789)
Q Consensus 581 ~~~~~lv~~l~~~~q~vp~~l~~~a~ 606 (789)
..+..+.+.|...-...+..|..+..
T Consensus 232 ~~l~~i~~~il~~y~~~~~~L~~i~~ 257 (358)
T 2pk2_A 232 ELLDELTHEFLQILEKTPNRLKRIWN 257 (358)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccccchhc
Confidence 33444444444444444445544443
No 180
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.20 E-value=2.9 Score=43.42 Aligned_cols=38 Identities=18% Similarity=0.227 Sum_probs=23.0
Q ss_pred ceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEe
Q 003881 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 372 ~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~S 410 (789)
...+|||||+|.|.... ...+..++...+....+|+.+
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 37899999999875421 223445555544555555554
No 181
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=84.16 E-value=1.7 Score=48.90 Aligned_cols=43 Identities=14% Similarity=0.258 Sum_probs=26.2
Q ss_pred eeEEEEeccchhccCC----------ChHHHHHHHhhcCCCceEEEEeccCcH
Q 003881 373 VTYLVLDEADRMFDLG----------FEPQIRSIVGQIRPDRQTLLFSATMPR 415 (789)
Q Consensus 373 i~~lVvDEah~m~~~~----------f~~~i~~il~~l~~~~q~ll~SAT~~~ 415 (789)
..+|+|||+|.|.... ....+..++..+.....++++.||-.+
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 3679999999886531 112344444544555667777777543
No 182
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=84.07 E-value=2.6 Score=41.25 Aligned_cols=18 Identities=33% Similarity=0.305 Sum_probs=15.0
Q ss_pred cCCCEEEEccCCChhhHH
Q 003881 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla 278 (789)
.|.-+++.+++|+|||..
T Consensus 22 ~G~~~~i~G~~GsGKTtl 39 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIF 39 (235)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 356788999999999964
No 183
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.89 E-value=2.6 Score=44.58 Aligned_cols=39 Identities=18% Similarity=0.367 Sum_probs=24.8
Q ss_pred CceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEe
Q 003881 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 371 ~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~S 410 (789)
....++||||+|.|... ....+..++...+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 35789999999987542 2334556666655555555544
No 184
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.87 E-value=2.1 Score=48.34 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=25.2
Q ss_pred CceeEEEEeccchhccCC--ChHHHHHHHhhcCCCceEEEEeccC
Q 003881 371 SRVTYLVLDEADRMFDLG--FEPQIRSIVGQIRPDRQTLLFSATM 413 (789)
Q Consensus 371 ~~i~~lVvDEah~m~~~~--f~~~i~~il~~l~~~~q~ll~SAT~ 413 (789)
....+|||||+|.|.... ....+..++.. ....+|+++++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCC
Confidence 345789999999986532 22344444443 344577777764
No 185
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.38 E-value=1.2 Score=49.33 Aligned_cols=54 Identities=20% Similarity=0.294 Sum_probs=32.9
Q ss_pred CCCCCcccCCCCHHHHHHHHHcC---CCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHH
Q 003881 222 RPVKTFEDCGFSTQLMHAISKQG---YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~g---~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla 278 (789)
+|-.+|++.+--..+.+.|...= +..|--++.-. +---+.+|+.+|.|+|||+.
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHH
Confidence 45678999987777777665431 11111111111 01237899999999999974
No 186
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=83.11 E-value=6.4 Score=41.79 Aligned_cols=16 Identities=38% Similarity=0.607 Sum_probs=14.4
Q ss_pred CCEEEEccCCChhhHH
Q 003881 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll~a~TGsGKTla 278 (789)
+.+|+.+|+|+|||..
T Consensus 71 ~~vLl~GppGtGKT~l 86 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAI 86 (368)
T ss_dssp CEEEEEESTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5799999999999975
No 187
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=82.86 E-value=3.6 Score=40.93 Aligned_cols=73 Identities=23% Similarity=0.301 Sum_probs=46.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeeh-----hhhc-cCCCCC
Q 003881 469 DDGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-----VAAR-GLDIKS 538 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-----v~~r-GlDI~~ 538 (789)
...++||.++++.-+..+.+.+... ++.+..++|+..... .+..+..+..+|+|+|. .+.+ .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 4568999999999999998888765 467788888765433 33445567789999993 3333 367777
Q ss_pred ccEEEE
Q 003881 539 IKSVVN 544 (789)
Q Consensus 539 v~~VI~ 544 (789)
+.+||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 887775
No 188
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=82.58 E-value=0.78 Score=51.00 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=14.0
Q ss_pred CCEEEEccCCChhhHH
Q 003881 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll~a~TGsGKTla 278 (789)
..+|+++|+|+|||..
T Consensus 51 ~~vLL~GppGtGKTtl 66 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTL 66 (447)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCcHHHH
Confidence 3699999999999975
No 189
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=82.46 E-value=5.9 Score=38.05 Aligned_cols=72 Identities=18% Similarity=0.216 Sum_probs=52.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHHc-----CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeeh-hh----h-ccCCCC
Q 003881 469 DDGDVLVFASKKTTVDEIESQLAQK-----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA----A-RGLDIK 537 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~----~-rGlDI~ 537 (789)
...++||.|+++.-+..+.+.+... ++.+..++|+....+.... + ....+|+|+|. .+ . ..+++.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~ 145 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVD 145 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCcc
Confidence 3458999999999999988888664 5788999999887554322 2 34678999994 22 2 235677
Q ss_pred CccEEEE
Q 003881 538 SIKSVVN 544 (789)
Q Consensus 538 ~v~~VI~ 544 (789)
.+++||.
T Consensus 146 ~~~~lVi 152 (206)
T 1vec_A 146 HVQMIVL 152 (206)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 7888775
No 190
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=82.27 E-value=4.1 Score=40.97 Aligned_cols=71 Identities=24% Similarity=0.331 Sum_probs=53.4
Q ss_pred CCCEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeeh-hh----h--ccCCCCC
Q 003881 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA----A--RGLDIKS 538 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~----~--rGlDI~~ 538 (789)
..++||.++++.-+..+++.+... ++.+..++|+.........+ ....+|+|+|. .+ . ..+++..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 457999999999998888887664 78899999998876554433 24689999993 22 2 3567888
Q ss_pred ccEEEE
Q 003881 539 IKSVVN 544 (789)
Q Consensus 539 v~~VI~ 544 (789)
+++||.
T Consensus 187 ~~~lVi 192 (249)
T 3ber_A 187 LKYLVM 192 (249)
T ss_dssp CCEEEE
T ss_pred cCEEEE
Confidence 888774
No 191
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=82.21 E-value=18 Score=39.29 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=17.9
Q ss_pred HHHHHH-----cCCCEEEEccCCChhhHH
Q 003881 255 ALPIIL-----SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 255 ~i~~il-----~grdvll~a~TGsGKTla 278 (789)
.+..++ .|.-++++++.|+|||..
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTL 194 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQL 194 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHH
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHH
Confidence 355555 345688999999999975
No 192
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=82.04 E-value=2.5 Score=40.59 Aligned_cols=71 Identities=17% Similarity=0.262 Sum_probs=43.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHH---HHHHh-cCCcEEEeChHHHHHHHhhcccccCce
Q 003881 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ---FKELK-AGCEIVIATPGRLIDMLKMKALTMSRV 373 (789)
Q Consensus 298 gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~---~~~l~-~~~dIiV~Tp~~L~~~l~~~~~~l~~i 373 (789)
+.++||.|+++..+..+...+... ++.+..++|+.+..+. +..+. ....|+|||. .+. ..+++..+
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~Gldi~~~ 115 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA-RGLDISNV 115 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCCSB
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----hhh-cCCCcccC
Confidence 567999999999998887777654 7899999998765433 23333 3578999993 222 23456777
Q ss_pred eEEEE
Q 003881 374 TYLVL 378 (789)
Q Consensus 374 ~~lVv 378 (789)
.+||.
T Consensus 116 ~~VI~ 120 (185)
T 2jgn_A 116 KHVIN 120 (185)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 77776
No 193
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=81.84 E-value=2 Score=44.42 Aligned_cols=18 Identities=28% Similarity=0.435 Sum_probs=15.3
Q ss_pred cCCCEEEEccCCChhhHH
Q 003881 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla 278 (789)
.|.-+++++++|+|||..
T Consensus 34 ~G~~~~i~G~~G~GKTTl 51 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTF 51 (296)
T ss_dssp TTCEEEEEESTTSSHHHH
T ss_pred CCeEEEEEeCCCCCHHHH
Confidence 456788999999999975
No 194
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=81.75 E-value=3.7 Score=45.98 Aligned_cols=52 Identities=19% Similarity=0.164 Sum_probs=38.6
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhh
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~ 323 (789)
.+....+.+-+|||||++ ++.+..- .+..+|||+|+..+|.|++++++.|+.
T Consensus 13 ~~~~~~l~g~~gs~ka~~--~a~l~~~---------~~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATL--VAEIAER---------HAGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHH--HHHHHHH---------SSSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHH--HHHHHHH---------hCCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 345688899999999975 2222221 122379999999999999999999864
No 195
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=81.67 E-value=5.4 Score=41.72 Aligned_cols=40 Identities=10% Similarity=0.174 Sum_probs=23.5
Q ss_pred cCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEe
Q 003881 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 370 l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~S 410 (789)
.....++||||||.|.... .+.+.+.+..-++...+|+.+
T Consensus 80 ~~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEE
T ss_pred cCCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEE
Confidence 3568899999999975432 233445555444444444443
No 196
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=81.65 E-value=1.5 Score=45.67 Aligned_cols=16 Identities=19% Similarity=0.025 Sum_probs=13.7
Q ss_pred CCEEEEccCCChhhHH
Q 003881 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll~a~TGsGKTla 278 (789)
+.+++.+|+|+|||..
T Consensus 37 ~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ 52 (293)
T ss_dssp SEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4688899999999964
No 197
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=81.28 E-value=3 Score=50.36 Aligned_cols=16 Identities=38% Similarity=0.499 Sum_probs=14.3
Q ss_pred CCEEEEccCCChhhHH
Q 003881 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll~a~TGsGKTla 278 (789)
.++++++++|+|||..
T Consensus 192 ~~vlL~G~pG~GKT~l 207 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAI 207 (854)
T ss_dssp CCCEEEECTTSCHHHH
T ss_pred CceEEEcCCCCCHHHH
Confidence 4799999999999974
No 198
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=81.18 E-value=11 Score=42.58 Aligned_cols=78 Identities=14% Similarity=0.151 Sum_probs=56.8
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHH---Hh-cCCcEEEeChHHHHHHHhhcccccCc
Q 003881 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LK-AGCEIVIATPGRLIDMLKMKALTMSR 372 (789)
Q Consensus 297 ~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~---l~-~~~dIiV~Tp~~L~~~l~~~~~~l~~ 372 (789)
.+.++||.|+|+.-|..+++.+.+... .++.+..++|+....+.... +. ...+|+|||. .+ ..-+++..
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~-~~GiDip~ 410 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VG-ARGMDFPN 410 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GG-TSSCCCTT
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hh-hcCCCccc
Confidence 356799999999999999888887643 36888999999876554332 22 3589999994 33 34457778
Q ss_pred eeEEEEecc
Q 003881 373 VTYLVLDEA 381 (789)
Q Consensus 373 i~~lVvDEa 381 (789)
+++||.-..
T Consensus 411 v~~VI~~~~ 419 (563)
T 3i5x_A 411 VHEVLQIGV 419 (563)
T ss_dssp CCEEEEESC
T ss_pred CCEEEEECC
Confidence 888886543
No 199
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=81.11 E-value=4.3 Score=42.48 Aligned_cols=18 Identities=11% Similarity=0.003 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCChhhHH
Q 003881 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla 278 (789)
.++.+++.++.|+|||..
T Consensus 30 ~~~~v~i~G~~G~GKT~L 47 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSL 47 (350)
T ss_dssp HCSEEEEECCTTSSHHHH
T ss_pred cCCeEEEECCCcCCHHHH
Confidence 467899999999999974
No 200
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=80.78 E-value=5.2 Score=39.87 Aligned_cols=71 Identities=15% Similarity=0.223 Sum_probs=53.7
Q ss_pred CCCEEEEecccccHHHHHHHHHH----cCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeeh-----hhh-ccCCCCCc
Q 003881 470 DGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-----VAA-RGLDIKSI 539 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~----~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-----v~~-rGlDI~~v 539 (789)
..++||.++++.-+..+.+.+.. .++.+..++|+.+.......+.. ..+|+|+|. .+. ..+++..+
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 45799999999998888777765 38899999999988766555442 478999993 222 34678888
Q ss_pred cEEEE
Q 003881 540 KSVVN 544 (789)
Q Consensus 540 ~~VI~ 544 (789)
++||.
T Consensus 178 ~~lVi 182 (242)
T 3fe2_A 178 TYLVL 182 (242)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 88874
No 201
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=80.68 E-value=1.7 Score=49.17 Aligned_cols=59 Identities=19% Similarity=0.351 Sum_probs=55.3
Q ss_pred CCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeeh
Q 003881 470 DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD 528 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~ 528 (789)
.+.+||.++++.-+....+.|...++.+..+|+..+..++..++..+..|..+||++|.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 47899999999999999999999999999999999999999999999999999999994
No 202
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=80.46 E-value=3.3 Score=43.25 Aligned_cols=71 Identities=18% Similarity=0.297 Sum_probs=51.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHH---hc-CCcEEEeChHHHHHHHhhcccccCce
Q 003881 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL---KA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (789)
Q Consensus 298 gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l---~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i 373 (789)
+.++||.|+|+.-+..+.+.+... ++.+..++|+.+..++...+ .. ..+|+||| +.+ ...+++..+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT-----~va-~~Gidi~~v 97 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-----DVA-ARGLDIPQV 97 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-----STT-TCSTTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe-----chh-hcCccccce
Confidence 456899999999988777666553 88999999998876554333 33 47899999 233 234567788
Q ss_pred eEEEE
Q 003881 374 TYLVL 378 (789)
Q Consensus 374 ~~lVv 378 (789)
.+||.
T Consensus 98 ~~VI~ 102 (300)
T 3i32_A 98 DLVVH 102 (300)
T ss_dssp SEEEE
T ss_pred eEEEE
Confidence 88874
No 203
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=80.09 E-value=6.2 Score=41.03 Aligned_cols=18 Identities=33% Similarity=0.521 Sum_probs=15.0
Q ss_pred cCCCEEEEccCCChhhHH
Q 003881 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla 278 (789)
.++-+++++++|+|||..
T Consensus 104 ~g~vi~lvG~~GsGKTTl 121 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTT 121 (296)
T ss_dssp CSSEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 356788899999999975
No 204
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=79.46 E-value=6.9 Score=42.12 Aligned_cols=72 Identities=17% Similarity=0.231 Sum_probs=53.3
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHH---Hh-cCCcEEEeChHHHHHHHhhcccccCc
Q 003881 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LK-AGCEIVIATPGRLIDMLKMKALTMSR 372 (789)
Q Consensus 297 ~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~---l~-~~~dIiV~Tp~~L~~~l~~~~~~l~~ 372 (789)
.+.++||.|+++..+..+++.+.+. ++.+..++|+.+..+.... +. ....|+|||. .+. ..+++..
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~-~Gidip~ 344 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA-RGLDISN 344 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHH-TTSCCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh-cCCCccc
Confidence 4667999999999999888777664 7899999999886554332 33 2578999994 333 3456778
Q ss_pred eeEEEE
Q 003881 373 VTYLVL 378 (789)
Q Consensus 373 i~~lVv 378 (789)
+++||.
T Consensus 345 v~~Vi~ 350 (417)
T 2i4i_A 345 VKHVIN 350 (417)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888875
No 205
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=79.31 E-value=5.3 Score=41.89 Aligned_cols=51 Identities=14% Similarity=0.015 Sum_probs=29.8
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHH
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK 320 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~ 320 (789)
.|.-++++|++|+|||.. ++-++.++..+ +..++++.-- .-..|+...+..
T Consensus 67 ~G~l~li~G~pG~GKTtl-~l~ia~~~a~~-------g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAF-ALKQAKNMSDN-------DDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp TTCEEEEECCTTSSHHHH-HHHHHHHHHTT-------TCEEEEEESS-SCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHH-HHHHHHHHHHc-------CCeEEEEECC-CCHHHHHHHHHH
Confidence 345688999999999964 45555444332 2457776532 233344444433
No 206
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=79.24 E-value=14 Score=42.10 Aligned_cols=79 Identities=14% Similarity=0.159 Sum_probs=57.3
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHH---HHh-cCCcEEEeChHHHHHHHhhcccccCc
Q 003881 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELK-AGCEIVIATPGRLIDMLKMKALTMSR 372 (789)
Q Consensus 297 ~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~---~l~-~~~dIiV~Tp~~L~~~l~~~~~~l~~ 372 (789)
.+.++||.|+|+..|..+++.+.+... .++.+..++|+....+... .+. ....|+|||. .+ ...+++..
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~-~~GiDip~ 359 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VG-ARGMDFPN 359 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GG-TSSCCCTT
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hh-hcCCCccc
Confidence 356799999999999999888887643 2688899999987655433 233 3589999994 33 33456778
Q ss_pred eeEEEEeccc
Q 003881 373 VTYLVLDEAD 382 (789)
Q Consensus 373 i~~lVvDEah 382 (789)
+++||.-..-
T Consensus 360 v~~VI~~~~p 369 (579)
T 3sqw_A 360 VHEVLQIGVP 369 (579)
T ss_dssp CCEEEEESCC
T ss_pred CCEEEEcCCC
Confidence 8888865543
No 207
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=78.90 E-value=2.3 Score=44.37 Aligned_cols=16 Identities=25% Similarity=0.401 Sum_probs=14.6
Q ss_pred CCEEEEccCCChhhHH
Q 003881 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll~a~TGsGKTla 278 (789)
..+++.+++|+|||..
T Consensus 39 ~~vll~G~~GtGKT~l 54 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTL 54 (324)
T ss_dssp CCCEEECCTTCCCHHH
T ss_pred CcEEEECCCCCCHHHH
Confidence 6899999999999975
No 208
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=78.24 E-value=20 Score=37.40 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=13.4
Q ss_pred CCEEEEccCCChhhHH
Q 003881 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll~a~TGsGKTla 278 (789)
+-+++++++|+|||..
T Consensus 105 ~vi~ivG~~GsGKTTl 120 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTS 120 (306)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEEcCCCChHHHH
Confidence 4577899999999975
No 209
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=77.83 E-value=5.8 Score=39.18 Aligned_cols=70 Identities=17% Similarity=0.230 Sum_probs=49.8
Q ss_pred CCCEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeeh-hh----hc--cCCCCC
Q 003881 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA----AR--GLDIKS 538 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~----~r--GlDI~~ 538 (789)
..++||.++++.-+..+.+.+... ++.+..++|+.+.......+ +..+|+|+|. .+ .+ .+++..
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~~ 171 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHATD 171 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCccccc
Confidence 458999999999999999888775 37889999988765444333 3678999993 22 22 366777
Q ss_pred ccEEEE
Q 003881 539 IKSVVN 544 (789)
Q Consensus 539 v~~VI~ 544 (789)
+++||.
T Consensus 172 ~~~lVi 177 (236)
T 2pl3_A 172 LQMLVL 177 (236)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 777774
No 210
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=77.38 E-value=4.3 Score=43.66 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=25.0
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCc
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~Pt 307 (789)
++-+++.++.|+|||.. ++.++.++... +..++++..-
T Consensus 74 G~li~I~G~pGsGKTtl-al~la~~~~~~-------g~~vlyi~~E 111 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTL-ALAIVAQAQKA-------GGTCAFIDAE 111 (366)
T ss_dssp TSEEEEEESTTSSHHHH-HHHHHHHHHHT-------TCCEEEEESS
T ss_pred CcEEEEEcCCCCChHHH-HHHHHHHHHHC-------CCeEEEEECC
Confidence 46688899999999974 55555555432 3346666543
No 211
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=77.14 E-value=7.5 Score=37.88 Aligned_cols=93 Identities=15% Similarity=0.160 Sum_probs=55.7
Q ss_pred EEecCCCcccHHH-H---HHhcCCCCCCCCEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhc
Q 003881 447 VHVIPSDAEKLPW-L---LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKS 518 (789)
Q Consensus 447 ~~~~~~~~~k~~~-L---~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~ 518 (789)
+...+....|-.. + +..+.......++||.++++.-+..+.+.+... ++.+..++|+.+..+.... +.
T Consensus 55 lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~- 130 (224)
T 1qde_A 55 LAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR- 130 (224)
T ss_dssp EEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT-
T ss_pred EEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC-
Confidence 3444555666543 2 333433334568999999999999888888764 6788999998876544332 22
Q ss_pred CCcceEEeeh-hh-----hccCCCCCccEEEE
Q 003881 519 GVYHVLIATD-VA-----ARGLDIKSIKSVVN 544 (789)
Q Consensus 519 G~~~VLVaT~-v~-----~rGlDI~~v~~VI~ 544 (789)
..+|+|+|. .+ ...+++..+.+||.
T Consensus 131 -~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 131 -DAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp -TCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred -CCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 378999994 22 23566777887774
No 212
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=76.99 E-value=9.3 Score=36.57 Aligned_cols=71 Identities=20% Similarity=0.215 Sum_probs=52.5
Q ss_pred CCCEEEEecccccHHHHHHHHHHc--CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeeh-h----hh-ccCCCCCccE
Q 003881 470 DGDVLVFASKKTTVDEIESQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-V----AA-RGLDIKSIKS 541 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~--g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v----~~-rGlDI~~v~~ 541 (789)
..++||.|+++.-+..+.+.+... .+.+..++|+.........+. ...+|+|+|. . +. ..+++..+++
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 147 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVEV 147 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhceE
Confidence 458999999999999999999876 467888999887655443332 2578999994 2 22 3467778888
Q ss_pred EEE
Q 003881 542 VVN 544 (789)
Q Consensus 542 VI~ 544 (789)
||.
T Consensus 148 iVi 150 (207)
T 2gxq_A 148 AVL 150 (207)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 213
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=76.94 E-value=14 Score=38.36 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=28.2
Q ss_pred CceeEEEEeccchhc-cCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHH
Q 003881 371 SRVTYLVLDEADRMF-DLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLARE 423 (789)
Q Consensus 371 ~~i~~lVvDEah~m~-~~~f~~~i~~il~~l~~~~q~ll~SAT~~~~i~~l~~~ 423 (789)
..+++||||++-.+. +......+..+...+.++.-++.+.++...+....++.
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~ 232 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARA 232 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHHHH
Confidence 467899999995432 21122334444455555555556777644443333333
No 214
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=76.37 E-value=2.4 Score=46.92 Aligned_cols=37 Identities=19% Similarity=0.155 Sum_probs=24.8
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcC
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP 306 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~P 306 (789)
|.-++++|++|+|||.. ++-++.++..+ +..++++.-
T Consensus 197 G~liiIaG~pG~GKTtl-al~ia~~~a~~-------g~~vl~fSl 233 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAF-ALKQAKNMSDN-------DDVVNLHSL 233 (444)
T ss_dssp SCEEEEEECSSSSHHHH-HHHHHHHHHHT-------TCEEEEECS
T ss_pred CcEEEEEeCCCCChHHH-HHHHHHHHHHc-------CCEEEEEEC
Confidence 45588899999999974 55555555432 445777753
No 215
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=75.95 E-value=4.5 Score=39.77 Aligned_cols=72 Identities=18% Similarity=0.353 Sum_probs=49.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHHc---CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeeh-hh-----hccCCCCCc
Q 003881 469 DDGDVLVFASKKTTVDEIESQLAQK---GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA-----ARGLDIKSI 539 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~---g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~-----~rGlDI~~v 539 (789)
...++||.++++.-+..+.+.+... ++.+..++|+.+...+...+ .. ..+|+|+|. .+ ...+++..+
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---SK-GVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---HS-CCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---cC-CCCEEEECHHHHHHHHHcCCcCcccc
Confidence 3458999999999999999998874 67888999987765444333 23 478999993 22 135678888
Q ss_pred cEEEE
Q 003881 540 KSVVN 544 (789)
Q Consensus 540 ~~VI~ 544 (789)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 88774
No 216
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=75.77 E-value=2.5 Score=55.04 Aligned_cols=45 Identities=24% Similarity=0.231 Sum_probs=30.7
Q ss_pred HHHHHc------CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcH
Q 003881 256 LPIILS------GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTR 308 (789)
Q Consensus 256 i~~il~------grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~Ptr 308 (789)
+..++. ++.+++++|+|+|||..++..+.... ..+.+++++..-.
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~--------~~G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ--------REGKTCAFIDAEH 1465 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH--------TTTCCEEEECTTS
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH--------HcCCcEEEEEccc
Confidence 666665 68999999999999986443333322 2356688876653
No 217
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=75.69 E-value=9.1 Score=39.05 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=19.7
Q ss_pred HHcCCCEEEEccCCChhhHHHHHHHHHHH
Q 003881 259 ILSGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 259 il~grdvll~a~TGsGKTla~llpil~~l 287 (789)
+..|.-+++.++.|+|||.. ++.++..+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl-~~~l~~~~ 54 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSML-ALQLAAQI 54 (279)
T ss_dssp EETTSEEEEEESTTSSHHHH-HHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHH-HHHHHHHH
Confidence 34667789999999999975 33333333
No 218
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=75.48 E-value=3 Score=41.53 Aligned_cols=43 Identities=9% Similarity=0.024 Sum_probs=26.2
Q ss_pred CceeEEEEeccchhcc-----CCChHHHHHHHhhcCCCceEEEEeccC
Q 003881 371 SRVTYLVLDEADRMFD-----LGFEPQIRSIVGQIRPDRQTLLFSATM 413 (789)
Q Consensus 371 ~~i~~lVvDEah~m~~-----~~f~~~i~~il~~l~~~~q~ll~SAT~ 413 (789)
...++||+||.-.+++ ......+..++..+...-.+++++.-.
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~ 181 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEA 181 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECC
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4678899999998775 333344666666654333345554443
No 219
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=75.47 E-value=13 Score=39.37 Aligned_cols=76 Identities=18% Similarity=0.304 Sum_probs=55.6
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHH---HHhc-CCcEEEeChHHHHHHHhhcccccCc
Q 003881 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELKA-GCEIVIATPGRLIDMLKMKALTMSR 372 (789)
Q Consensus 297 ~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~---~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~ 372 (789)
.+.++||.|+++.-|..+++.++.. ++.+..++|+.+..+... .+.. ...|+|||. .+ ...+++..
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidip~ 311 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VL-ARGIDIPT 311 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GG-SSSCCCTT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hh-hcCCCccc
Confidence 3567999999999998888777665 788899999987655433 3333 478999993 33 34567888
Q ss_pred eeEEEEeccc
Q 003881 373 VTYLVLDEAD 382 (789)
Q Consensus 373 i~~lVvDEah 382 (789)
+++||.-...
T Consensus 312 ~~~Vi~~~~p 321 (395)
T 3pey_A 312 VSMVVNYDLP 321 (395)
T ss_dssp EEEEEESSCC
T ss_pred CCEEEEcCCC
Confidence 9998875544
No 220
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=74.85 E-value=4.6 Score=49.90 Aligned_cols=74 Identities=11% Similarity=0.221 Sum_probs=57.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHHc----CC----ceeeccCCCCHHHHHHHHHHhhcCCcceEEeeh-hhhccCC-CCC
Q 003881 469 DDGDVLVFASKKTTVDEIESQLAQK----GF----KAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAARGLD-IKS 538 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~----g~----~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~~rGlD-I~~ 538 (789)
...++||.++++.-+..+++.|... ++ .+..+||+.+..++...++.+.. .+|||+|. .+..-+. +..
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 3568999999999999988888754 56 78999999999988888888877 89999994 3333222 557
Q ss_pred ccEEEE
Q 003881 539 IKSVVN 544 (789)
Q Consensus 539 v~~VI~ 544 (789)
+++||.
T Consensus 176 l~~lVi 181 (1054)
T 1gku_B 176 FDFIFV 181 (1054)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777774
No 221
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=74.78 E-value=7.9 Score=41.44 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=53.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHH---Hhc-CCcEEEeChHHHHHHHhhcccccCce
Q 003881 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (789)
Q Consensus 298 gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~---l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i 373 (789)
+.++||.|+++..|..+++.+.+. ++.+..++|+.+..+.... +.. ...|+|||. .+ ...+++..+
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidip~~ 335 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VC-ARGIDVEQV 335 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GG-TSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----cc-ccCCCccCC
Confidence 457999999999999888877765 7888999999876654332 333 478999993 33 345578889
Q ss_pred eEEEE
Q 003881 374 TYLVL 378 (789)
Q Consensus 374 ~~lVv 378 (789)
++||.
T Consensus 336 ~~Vi~ 340 (412)
T 3fht_A 336 SVVIN 340 (412)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 98884
No 222
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=74.69 E-value=50 Score=38.24 Aligned_cols=78 Identities=15% Similarity=0.326 Sum_probs=58.0
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHH---Hhc-CCcEEEeChHHHHHHHhhcccccCc
Q 003881 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LKA-GCEIVIATPGRLIDMLKMKALTMSR 372 (789)
Q Consensus 297 ~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~---l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~ 372 (789)
.+.++||.|+|+..|..+.+.+... ++++.+++|+....+.... +.. ..+|+|||. .+ ...+.+..
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l-~~GlDip~ 513 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LL-REGLDIPE 513 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CC-STTCCCTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hh-hCCcccCC
Confidence 3568999999999998877777664 7889889988765544333 333 489999993 23 34557888
Q ss_pred eeEEEEeccchh
Q 003881 373 VTYLVLDEADRM 384 (789)
Q Consensus 373 i~~lVvDEah~m 384 (789)
+++||+=+++..
T Consensus 514 v~lVi~~d~d~~ 525 (661)
T 2d7d_A 514 VSLVAILDADKE 525 (661)
T ss_dssp EEEEEETTTTCC
T ss_pred CCEEEEeCcccc
Confidence 999999998764
No 223
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=74.60 E-value=2.6 Score=43.61 Aligned_cols=15 Identities=33% Similarity=0.499 Sum_probs=13.6
Q ss_pred CEEEEccCCChhhHH
Q 003881 264 DIIGIAKTGSGKTAA 278 (789)
Q Consensus 264 dvll~a~TGsGKTla 278 (789)
++++.||.|+|||..
T Consensus 40 ~~ll~G~~G~GKt~l 54 (319)
T 2chq_A 40 HLLFSGPPGTGKTAT 54 (319)
T ss_dssp CEEEESSSSSSHHHH
T ss_pred eEEEECcCCcCHHHH
Confidence 599999999999965
No 224
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=74.55 E-value=3.2 Score=47.20 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=19.0
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHh
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l~ 288 (789)
.+..+++.+|+|+|||.. +-++...+
T Consensus 107 ~g~~vll~Gp~GtGKTtl--ar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSL--AKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHH--HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHHhc
Confidence 467899999999999964 33444443
No 225
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=74.55 E-value=12 Score=36.09 Aligned_cols=17 Identities=29% Similarity=0.130 Sum_probs=14.5
Q ss_pred CCCEEEEccCCChhhHH
Q 003881 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvll~a~TGsGKTla 278 (789)
|.-+++.+++|+|||..
T Consensus 20 G~~~~i~G~~GsGKTtl 36 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTL 36 (220)
T ss_dssp TSEEEEECSTTSSHHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 45688999999999975
No 226
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=74.50 E-value=3.8 Score=40.06 Aligned_cols=72 Identities=18% Similarity=0.257 Sum_probs=49.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHHc--------CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeeh-----hhhc-cC
Q 003881 469 DDGDVLVFASKKTTVDEIESQLAQK--------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-----VAAR-GL 534 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~--------g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-----v~~r-Gl 534 (789)
...++||.++++.-+..+.+.+.+. ++.+..++|+.+..+.. +.+ ....+|+|+|. .+.. .+
T Consensus 71 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~Iiv~Tp~~l~~~l~~~~~ 146 (219)
T 1q0u_A 71 AEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKL-NVQPHIVIGTPGRINDFIREQAL 146 (219)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCC-SSCCSEEEECHHHHHHHHHTTCC
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHc-CCCCCEEEeCHHHHHHHHHcCCC
Confidence 3458999999999999888887654 57888899987643321 111 23578999993 2222 45
Q ss_pred CCCCccEEEE
Q 003881 535 DIKSIKSVVN 544 (789)
Q Consensus 535 DI~~v~~VI~ 544 (789)
++..+++||.
T Consensus 147 ~~~~~~~lVi 156 (219)
T 1q0u_A 147 DVHTAHILVV 156 (219)
T ss_dssp CGGGCCEEEE
T ss_pred CcCcceEEEE
Confidence 6777777774
No 227
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=74.30 E-value=1.7 Score=46.47 Aligned_cols=37 Identities=27% Similarity=0.306 Sum_probs=24.0
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcC
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP 306 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~P 306 (789)
|+-+++.++.|+|||.. ++.++..+... +..++++.-
T Consensus 61 G~iv~I~G~pGsGKTtL-al~la~~~~~~-------g~~vlyi~~ 97 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTV-ALHAVANAQAA-------GGIAAFIDA 97 (349)
T ss_dssp TSEEEEEESTTSSHHHH-HHHHHHHHHHT-------TCCEEEEES
T ss_pred CeEEEEECCCCCCHHHH-HHHHHHHHHhC-------CCeEEEEEC
Confidence 46689999999999975 44444444322 344666643
No 228
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=73.75 E-value=24 Score=35.08 Aligned_cols=71 Identities=18% Similarity=0.213 Sum_probs=51.2
Q ss_pred CCCEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeeh-hhh-----ccCCCCCc
Q 003881 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA-----RGLDIKSI 539 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~~-----rGlDI~~v 539 (789)
..++||.|+++.-+..+.+.+... ++.+..++|+.+.......+ ....+|+|+|. .+. ..+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 358999999999999888887664 56788899988765443332 24578999993 222 23677788
Q ss_pred cEEEE
Q 003881 540 KSVVN 544 (789)
Q Consensus 540 ~~VI~ 544 (789)
++||.
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88774
No 229
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=73.31 E-value=8 Score=45.79 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=15.0
Q ss_pred CCCEEEEccCCChhhHH
Q 003881 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvll~a~TGsGKTla 278 (789)
..++++++++|+|||..
T Consensus 207 ~~~vlL~G~~GtGKT~l 223 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAI 223 (758)
T ss_dssp SCEEEEECCTTSSHHHH
T ss_pred CCCeEEEcCCCCCHHHH
Confidence 46799999999999975
No 230
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=73.29 E-value=31 Score=35.83 Aligned_cols=74 Identities=16% Similarity=0.297 Sum_probs=52.8
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHH---HHhc-CCcEEEeChHHHHHHHhhcccccCc
Q 003881 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELKA-GCEIVIATPGRLIDMLKMKALTMSR 372 (789)
Q Consensus 297 ~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~---~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~ 372 (789)
.+.++||.|+++.-+..+++.+++. ++.+..++|+.+..+... .+.. ...|+|||. .+. ..+++..
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~-~Gid~~~ 306 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMS-RGIDVND 306 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THH-HHCCCSC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhh-cCCCccc
Confidence 3566899999999999888777765 788999999887654433 2232 478999993 222 2346777
Q ss_pred eeEEEEec
Q 003881 373 VTYLVLDE 380 (789)
Q Consensus 373 i~~lVvDE 380 (789)
+++||.-.
T Consensus 307 ~~~Vi~~~ 314 (367)
T 1hv8_A 307 LNCVINYH 314 (367)
T ss_dssp CSEEEESS
T ss_pred CCEEEEec
Confidence 88887644
No 231
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=73.21 E-value=21 Score=39.05 Aligned_cols=17 Identities=29% Similarity=0.274 Sum_probs=13.7
Q ss_pred CCCEEEEccCCChhhHH
Q 003881 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvll~a~TGsGKTla 278 (789)
++-++++++.|+|||..
T Consensus 98 ~~vi~i~G~~GsGKTT~ 114 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTT 114 (425)
T ss_dssp SEEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34577789999999975
No 232
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=73.18 E-value=7.1 Score=41.06 Aligned_cols=44 Identities=20% Similarity=0.092 Sum_probs=24.9
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCc
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~Pt 307 (789)
|.-+++.+++|+|||.. ++.++..+...... ...+..++++.--
T Consensus 107 G~i~~i~G~~GsGKT~l-a~~la~~~~~~~~~-gg~~~~vlyi~~e 150 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQL-CHQLSVNVQLPPEK-GGLSGKAVYIDTE 150 (324)
T ss_dssp TSEEEEEESTTSSHHHH-HHHHHHHTTSCGGG-TCCSCEEEEEESS
T ss_pred CcEEEEECCCCCCHhHH-HHHHHHHHhccccc-CCCCCeEEEEECC
Confidence 46789999999999974 44444433221110 1113457776543
No 233
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=72.75 E-value=7.9 Score=42.09 Aligned_cols=90 Identities=20% Similarity=0.233 Sum_probs=61.6
Q ss_pred cCCCcccHHHHHHhcCCC--CCCCCEEEEecccccHHHHHHHHHHc-CC---ceeeccCCCCHHHHHHHHHHhhcCCcce
Q 003881 450 IPSDAEKLPWLLEKLPGM--IDDGDVLVFASKKTTVDEIESQLAQK-GF---KAAALHGDKDQASRMEILQKFKSGVYHV 523 (789)
Q Consensus 450 ~~~~~~k~~~L~~~L~~~--~~~~kvLVF~~s~~~a~~l~~~L~~~-g~---~v~~lhg~~~~~eR~~~l~~F~~G~~~V 523 (789)
.+....|-...+..+... ....++||.|+++.-+..+.+.+.+. +. .+..+||+....++..... ..+|
T Consensus 30 ~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~i 104 (494)
T 1wp9_A 30 LPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKV 104 (494)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSE
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCE
Confidence 344555544333332221 24569999999999999998888776 55 8999999999887655443 4689
Q ss_pred EEeeh-hhh-----ccCCCCCccEEEE
Q 003881 524 LIATD-VAA-----RGLDIKSIKSVVN 544 (789)
Q Consensus 524 LVaT~-v~~-----rGlDI~~v~~VI~ 544 (789)
+|+|. .+. ..+.+..+++||.
T Consensus 105 vv~T~~~l~~~~~~~~~~~~~~~~vIi 131 (494)
T 1wp9_A 105 IVATPQTIENDLLAGRISLEDVSLIVF 131 (494)
T ss_dssp EEECHHHHHHHHHTTSCCTTSCSEEEE
T ss_pred EEecHHHHHHHHhcCCcchhhceEEEE
Confidence 99993 333 2466777887775
No 234
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=72.71 E-value=11 Score=42.14 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=16.5
Q ss_pred CEEEEccCCChhhHHHHHHHHHHHh
Q 003881 264 DIIGIAKTGSGKTAAFVLPMIVHIM 288 (789)
Q Consensus 264 dvll~a~TGsGKTla~llpil~~l~ 288 (789)
-+++++++|+|||.. +-+|..++
T Consensus 295 VI~LVGpNGSGKTTL--l~~LAgll 317 (503)
T 2yhs_A 295 VILMVGVNGVGKTTT--IGKLARQF 317 (503)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHH
T ss_pred EEEEECCCcccHHHH--HHHHHHHh
Confidence 477899999999974 44455444
No 235
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=72.18 E-value=3.6 Score=40.81 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=17.0
Q ss_pred CCCEEEEccCCChhhHHHHHHHHH
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIV 285 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~ 285 (789)
|.-++++|++|+|||.. ++-++.
T Consensus 30 G~l~~i~G~pG~GKT~l-~l~~~~ 52 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTF-AAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHH-HHHHHH
T ss_pred CeEEEEEeCCCCCHHHH-HHHHHH
Confidence 46689999999999964 444433
No 236
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=72.11 E-value=2.5 Score=45.40 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=25.2
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCc
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~Pt 307 (789)
|.-+++.+++|+|||.. ++.++..+.. .+..++++..-
T Consensus 61 G~i~~I~GppGsGKSTL-al~la~~~~~-------~gg~VlyId~E 98 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTL-ALHAIAEAQK-------MGGVAAFIDAE 98 (356)
T ss_dssp TEEEEEEESTTSSHHHH-HHHHHHHHHH-------TTCCEEEEESS
T ss_pred CcEEEEECCCCCCHHHH-HHHHHHHHHh-------cCCeEEEEecc
Confidence 45688899999999974 5555555432 23456777554
No 237
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=71.08 E-value=14 Score=39.08 Aligned_cols=91 Identities=16% Similarity=0.160 Sum_probs=61.3
Q ss_pred ecCCCcccHHH----HHHhcCCCCCCCCEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCC
Q 003881 449 VIPSDAEKLPW----LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGV 520 (789)
Q Consensus 449 ~~~~~~~k~~~----L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~ 520 (789)
..+....|-.. ++..+.......++||.|+++.-+..+.+.+... ++.+..++|+....+....+. .
T Consensus 64 ~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~ 138 (394)
T 1fuu_A 64 QAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----D 138 (394)
T ss_dssp CCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----H
T ss_pred ECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----C
Confidence 34445555433 2344443334569999999999999888887663 678999999998776655544 4
Q ss_pred cceEEeeh-hhh-----ccCCCCCccEEEE
Q 003881 521 YHVLIATD-VAA-----RGLDIKSIKSVVN 544 (789)
Q Consensus 521 ~~VLVaT~-v~~-----rGlDI~~v~~VI~ 544 (789)
.+|+|+|. .+. ..+.+..+.+||.
T Consensus 139 ~~i~v~T~~~l~~~~~~~~~~~~~~~~vIi 168 (394)
T 1fuu_A 139 AQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 168 (394)
T ss_dssp CSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 68999993 221 3455667777774
No 238
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=70.99 E-value=67 Score=37.20 Aligned_cols=77 Identities=16% Similarity=0.258 Sum_probs=56.7
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHH---Hhc-CCcEEEeChHHHHHHHhhcccccCc
Q 003881 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LKA-GCEIVIATPGRLIDMLKMKALTMSR 372 (789)
Q Consensus 297 ~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~---l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~ 372 (789)
.+.++||.|+|+..|..+.+.+.+. ++++.+++|+....+.... +.. ..+|+|||. .+ ...+++..
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l-~~GlDip~ 507 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LL-REGLDIPE 507 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CC-CTTCCCTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hh-hcCccCCC
Confidence 3568999999999998877777665 7888889988765544333 333 479999992 23 34456888
Q ss_pred eeEEEEeccch
Q 003881 373 VTYLVLDEADR 383 (789)
Q Consensus 373 i~~lVvDEah~ 383 (789)
+++||+=+++.
T Consensus 508 v~lVI~~d~d~ 518 (664)
T 1c4o_A 508 VSLVAILDADK 518 (664)
T ss_dssp EEEEEETTTTS
T ss_pred CCEEEEeCCcc
Confidence 99999888875
No 239
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.23 E-value=1.9 Score=47.57 Aligned_cols=55 Identities=15% Similarity=0.303 Sum_probs=35.6
Q ss_pred CCCCCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHH
Q 003881 221 PRPVKTFEDCGFSTQLMHAISKQ---GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 221 P~pi~sf~~~~l~~~l~~~l~~~---g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla 278 (789)
.+|-.+|++++--+...+.|... .+..|.-++...++ .-+.+|+.+|+|+|||+.
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLL 231 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHH
Confidence 45778999998777777766542 11223333322211 237899999999999974
No 240
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=70.04 E-value=13 Score=39.64 Aligned_cols=72 Identities=10% Similarity=0.158 Sum_probs=52.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHH---HHhc-CCcEEEeChHHHHHHHhhcccccCce
Q 003881 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (789)
Q Consensus 298 gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~---~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i 373 (789)
+.++||.|+++..+..+++.+... ++.+..++|+.+..+... .+.. ...|+|||. .+ ...+++..+
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~-~~Gidip~~ 327 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LL-TRGIDIQAV 327 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CS-SSSCCCTTE
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----cc-ccCCCccCC
Confidence 457999999999999888877765 788999999887655433 2333 478999993 22 234567788
Q ss_pred eEEEEe
Q 003881 374 TYLVLD 379 (789)
Q Consensus 374 ~~lVvD 379 (789)
++||.-
T Consensus 328 ~~Vi~~ 333 (400)
T 1s2m_A 328 NVVINF 333 (400)
T ss_dssp EEEEES
T ss_pred CEEEEe
Confidence 888853
No 241
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=70.01 E-value=18 Score=36.40 Aligned_cols=71 Identities=14% Similarity=0.247 Sum_probs=52.4
Q ss_pred CCCEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeeh-----hhh--ccCCCCC
Q 003881 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-----VAA--RGLDIKS 538 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-----v~~--rGlDI~~ 538 (789)
..++||.++++.-+..+.+.|++. +..+..++|+......... +..+ .+|+|+|. .+. .++++..
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~ 201 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYKN 201 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCccccc
Confidence 457999999999999988888764 5678889998886554433 3334 88999993 222 2477888
Q ss_pred ccEEEE
Q 003881 539 IKSVVN 544 (789)
Q Consensus 539 v~~VI~ 544 (789)
+.+||.
T Consensus 202 l~~lVi 207 (262)
T 3ly5_A 202 LQCLVI 207 (262)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888774
No 242
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=69.99 E-value=3.2 Score=39.95 Aligned_cols=121 Identities=13% Similarity=0.197 Sum_probs=69.7
Q ss_pred CcHHHHHHHHHHHcCC--CEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003881 248 PTSIQCQALPIILSGR--DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (789)
Q Consensus 248 ptpiQ~~~i~~il~gr--dvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~ 325 (789)
..+-|..++..++..+ -.++.+.-|++||...+.-++ ++. +..|..+.||+|+..-.....+..
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~-~~a------~~~Gr~V~vLAp~~~s~~~l~~~~------- 100 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELV-MMA------REQGREVQIIAADRRSQMNMKQDE------- 100 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHH-HHH------HHTTCCEEEECSTTHHHHHHSCTT-------
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHH-HHH------HhcCeEEEEEcCchHHHHHHHhhc-------
Confidence 3467888998887554 356678999999987433333 222 245788999999976665432111
Q ss_pred CCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEEEEeccchhccCCChHHHHHHHhh-cCCCc
Q 003881 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQ-IRPDR 404 (789)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~-l~~~~ 404 (789)
++.- +++ +. ..+......|..=+++|||||-.|.- ..+..++.. ...+.
T Consensus 101 ~l~~--------------------~t~-t~-----~~ll~~~~~~tp~s~lIVD~AekLS~----kE~~~Lld~A~~~na 150 (189)
T 2l8b_A 101 RLSG--------------------ELI-TG-----RRQLLEGMAFTPGSTVIVDQGEKLSL----KETLTLLDGAARHNV 150 (189)
T ss_dssp TCSS--------------------CSS-ST-----TTTTTTSCCCCCCCEEEEEESSSHHH----HHHHHHHHHHHHTTC
T ss_pred CcCc--------------------cee-eh-----hhhhcCCCCCCCCCEEEEechhhcCH----HHHHHHHHHHHhcCC
Confidence 1110 001 11 11222222234445899999998653 233444433 23567
Q ss_pred eEEEEecc
Q 003881 405 QTLLFSAT 412 (789)
Q Consensus 405 q~ll~SAT 412 (789)
|+||+--+
T Consensus 151 qvvll~~~ 158 (189)
T 2l8b_A 151 QVLITDSG 158 (189)
T ss_dssp CEEEEESS
T ss_pred EEEEeCCc
Confidence 88887665
No 243
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=69.85 E-value=4 Score=48.58 Aligned_cols=54 Identities=20% Similarity=0.266 Sum_probs=32.3
Q ss_pred CCCCCcccCCCCHHHHHHHHHcC---CCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHH
Q 003881 222 RPVKTFEDCGFSTQLMHAISKQG---YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~g---~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla 278 (789)
.|-.+|.+++.-..+.+.|...- ...|.-++.-. +...+.+|+.+|.|+|||+.
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~l 527 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHH
Confidence 34567888887777777776531 11111111000 01225799999999999964
No 244
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=69.73 E-value=14 Score=35.83 Aligned_cols=18 Identities=28% Similarity=0.182 Sum_probs=14.9
Q ss_pred cCCCEEEEccCCChhhHH
Q 003881 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla 278 (789)
.|.-+.+++++|+|||..
T Consensus 24 ~G~~~~l~G~nGsGKSTl 41 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQL 41 (231)
T ss_dssp SSEEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 345688999999999974
No 245
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=69.72 E-value=18 Score=39.76 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=13.3
Q ss_pred CCEEEEccCCChhhHH
Q 003881 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll~a~TGsGKTla 278 (789)
+.++++++.|+|||..
T Consensus 101 ~vI~ivG~~GvGKTT~ 116 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTS 116 (433)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3577789999999976
No 246
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=72.29 E-value=0.97 Score=42.77 Aligned_cols=72 Identities=15% Similarity=0.209 Sum_probs=48.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHH---Hhc-CCcEEEeChHHHHHHHhhcccccCce
Q 003881 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (789)
Q Consensus 298 gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~---l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i 373 (789)
+.++||.|+++..+..+.+.+... ++.+..++|+.+..+.... +.. ...|+|||. .+. ..+++..+
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~Gid~~~~ 99 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VAA-RGIDIPDV 99 (170)
Confidence 456899999999998887777665 7888889998765443222 222 468999992 222 23356666
Q ss_pred eEEEEe
Q 003881 374 TYLVLD 379 (789)
Q Consensus 374 ~~lVvD 379 (789)
.+||.-
T Consensus 100 ~~Vi~~ 105 (170)
T 2yjt_D 100 SHVFNF 105 (170)
Confidence 666653
No 247
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=69.05 E-value=14 Score=39.57 Aligned_cols=72 Identities=17% Similarity=0.273 Sum_probs=52.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHH---HHhc-CCcEEEeChHHHHHHHhhcccccCce
Q 003881 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (789)
Q Consensus 298 gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~---~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i 373 (789)
..++||.|+++..+..+.+.+.+. ++.+..++|+.+..+... .+.. ...|+|||. .+ ...+++..+
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidi~~v 345 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VW-ARGLDVPQV 345 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GG-SSSCCCTTE
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hh-hCcCCcccC
Confidence 347999999999998887777664 788899999987654433 2232 578999994 33 344578888
Q ss_pred eEEEEe
Q 003881 374 TYLVLD 379 (789)
Q Consensus 374 ~~lVvD 379 (789)
++||.-
T Consensus 346 ~~Vi~~ 351 (410)
T 2j0s_A 346 SLIINY 351 (410)
T ss_dssp EEEEES
T ss_pred CEEEEE
Confidence 888853
No 248
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=68.93 E-value=14 Score=38.45 Aligned_cols=24 Identities=29% Similarity=0.173 Sum_probs=18.0
Q ss_pred HHHHHHc-----CCCEEEEccCCChhhHH
Q 003881 255 ALPIILS-----GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 255 ~i~~il~-----grdvll~a~TGsGKTla 278 (789)
.+..++. |.-+++.+++|+|||..
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~l 114 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQI 114 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHH
Confidence 3555553 35689999999999975
No 249
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=68.44 E-value=29 Score=38.88 Aligned_cols=15 Identities=40% Similarity=0.494 Sum_probs=13.1
Q ss_pred CEEEEccCCChhhHH
Q 003881 264 DIIGIAKTGSGKTAA 278 (789)
Q Consensus 264 dvll~a~TGsGKTla 278 (789)
.+++++.+|+|||..
T Consensus 103 vI~ivG~~GvGKTTl 117 (504)
T 2j37_W 103 VIMFVGLQGSGKTTT 117 (504)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578889999999975
No 250
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=67.36 E-value=13 Score=40.53 Aligned_cols=69 Identities=12% Similarity=0.142 Sum_probs=50.9
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHH---Hhc-CCcEEEeChHHHHHHHhhcccccCceeE
Q 003881 300 IGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LKA-GCEIVIATPGRLIDMLKMKALTMSRVTY 375 (789)
Q Consensus 300 ~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~---l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i~~ 375 (789)
.+||.|+++.-|..+++.+.+. ++.+..++|+....+.... ++. ...|+|||. .+ ...+++..+++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~-~rGlDi~~v~~ 371 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VA-SRGLDIKNIKH 371 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GG-TSSCCCTTCCE
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hh-hCCCCcccCCE
Confidence 3899999999998887777664 7899999999876554333 333 479999994 33 34556778888
Q ss_pred EEE
Q 003881 376 LVL 378 (789)
Q Consensus 376 lVv 378 (789)
||.
T Consensus 372 VI~ 374 (434)
T 2db3_A 372 VIN 374 (434)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 251
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=66.65 E-value=4.5 Score=44.42 Aligned_cols=43 Identities=21% Similarity=0.294 Sum_probs=31.9
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHH
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAH 312 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~ 312 (789)
..+++++|+||+|||.. +.+++..++.. +..++|+=|..++..
T Consensus 53 ~~h~~i~G~tGsGKs~~-~~~li~~~~~~-------g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVL-LRELAYTGLLR-------GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHH-HHHHHHHHHHT-------TCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHH-HHHHHHHHHHC-------CCcEEEEeCCCchhH
Confidence 47999999999999986 44455554432 556888889888864
No 252
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=66.43 E-value=25 Score=37.47 Aligned_cols=93 Identities=22% Similarity=0.254 Sum_probs=62.1
Q ss_pred ecCCCcccHHH----HHHhcCCCCCCCCEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCC
Q 003881 449 VIPSDAEKLPW----LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGV 520 (789)
Q Consensus 449 ~~~~~~~k~~~----L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~ 520 (789)
..+....|-.. ++..+.......++||.++++.-+..+.+.+... +..+..++|+...... +..+..+.
T Consensus 83 ~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 159 (414)
T 3eiq_A 83 QAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEA 159 (414)
T ss_dssp CCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTC
T ss_pred ECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCC
Confidence 34445556433 3344443335568999999999999888888764 5778888888765443 44556678
Q ss_pred cceEEeeh-----hhh-ccCCCCCccEEEE
Q 003881 521 YHVLIATD-----VAA-RGLDIKSIKSVVN 544 (789)
Q Consensus 521 ~~VLVaT~-----v~~-rGlDI~~v~~VI~ 544 (789)
.+|+|+|. .+. ..+++..+.+||.
T Consensus 160 ~~iiv~T~~~l~~~l~~~~~~~~~~~~vVi 189 (414)
T 3eiq_A 160 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVL 189 (414)
T ss_dssp CSEEEECHHHHHHHHHHTSSCSTTCCEEEE
T ss_pred CCEEEECHHHHHHHHHcCCcccccCcEEEE
Confidence 89999993 222 3356777777764
No 253
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=65.76 E-value=5 Score=34.73 Aligned_cols=47 Identities=19% Similarity=0.153 Sum_probs=37.6
Q ss_pred HHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCC
Q 003881 459 WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKD 505 (789)
Q Consensus 459 ~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~ 505 (789)
.|.+.+.......+++|||.+-..+...+..|...|+.+..|.|++.
T Consensus 44 ~l~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 44 ELREKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HHHHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHHHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 34444444445668999999988899999999999999999999864
No 254
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=65.76 E-value=5.4 Score=39.71 Aligned_cols=72 Identities=19% Similarity=0.326 Sum_probs=49.1
Q ss_pred CCCEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeeh-hh----hc---cCCCC
Q 003881 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA----AR---GLDIK 537 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~----~r---GlDI~ 537 (789)
..++||.++++.-+..+++.+.+. ++.+..++|+..... .......+..+|+|+|. .+ .+ .+++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 347999999999999999988775 667777776532211 11122346678999993 22 22 47888
Q ss_pred CccEEEE
Q 003881 538 SIKSVVN 544 (789)
Q Consensus 538 ~v~~VI~ 544 (789)
.+.+||.
T Consensus 175 ~~~~lVi 181 (245)
T 3dkp_A 175 SVEWLVV 181 (245)
T ss_dssp TCCEEEE
T ss_pred cCcEEEE
Confidence 8888774
No 255
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=65.65 E-value=17 Score=43.42 Aligned_cols=18 Identities=33% Similarity=0.440 Sum_probs=15.3
Q ss_pred cCCCEEEEccCCChhhHH
Q 003881 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla 278 (789)
.++.+++++++|+|||+.
T Consensus 237 ~~~~vLL~Gp~GtGKTtL 254 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCCEEEECSCTTSSHHHH
T ss_pred CCCeEEEECcCCCCHHHH
Confidence 356799999999999964
No 256
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=65.12 E-value=14 Score=39.11 Aligned_cols=44 Identities=11% Similarity=-0.062 Sum_probs=25.1
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCc
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~Pt 307 (789)
|.-+++.+++|+|||.. ++.++..+..... ....+..++++.-.
T Consensus 122 G~i~~I~G~~GsGKTtl-a~~la~~~~~~~~-~gg~~~~vlyi~~E 165 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQL-SHTLCVTAQLPGA-GGYPGGKIIFIDTE 165 (343)
T ss_dssp SEEEEEECCTTCTHHHH-HHHHHHHTTSCBT-TTBCCCEEEEEESS
T ss_pred CeEEEEECCCCCCHHHH-HHHHHHHHhcccc-cCCCCCeEEEEECC
Confidence 45688999999999974 4444443222111 11134567777543
No 257
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=64.59 E-value=7.3 Score=46.35 Aligned_cols=16 Identities=38% Similarity=0.520 Sum_probs=14.4
Q ss_pred CCEEEEccCCChhhHH
Q 003881 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll~a~TGsGKTla 278 (789)
+.+|+.+|.|+|||+.
T Consensus 239 ~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLI 254 (806)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5799999999999974
No 258
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=63.48 E-value=3.3 Score=42.31 Aligned_cols=20 Identities=30% Similarity=0.232 Sum_probs=16.3
Q ss_pred HHcCCCEEEEccCCChhhHH
Q 003881 259 ILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 259 il~grdvll~a~TGsGKTla 278 (789)
+..|.-+++++|||||||..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 34566789999999999974
No 259
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=62.75 E-value=7.4 Score=43.64 Aligned_cols=71 Identities=13% Similarity=0.293 Sum_probs=48.4
Q ss_pred CCCEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeeh-hhh----cc-C-CCCC
Q 003881 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA----RG-L-DIKS 538 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~~----rG-l-DI~~ 538 (789)
..++||.|+++.-+..+.+.+... ++.+..+||+.+...+...+. ...+|+|+|. .+. .+ + .+..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 568999999999888888887765 899999999987655433222 1378999993 332 22 4 6777
Q ss_pred ccEEEE
Q 003881 539 IKSVVN 544 (789)
Q Consensus 539 v~~VI~ 544 (789)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888875
No 260
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=62.65 E-value=5.7 Score=43.76 Aligned_cols=16 Identities=38% Similarity=0.493 Sum_probs=13.9
Q ss_pred CCEEEEccCCChhhHH
Q 003881 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll~a~TGsGKTla 278 (789)
+.+++++++|+|||..
T Consensus 100 ~vI~ivG~~GvGKTTl 115 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTT 115 (432)
T ss_dssp CCEEEECCSSSSTTHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4688999999999975
No 261
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=62.41 E-value=14 Score=38.28 Aligned_cols=107 Identities=14% Similarity=0.037 Sum_probs=63.9
Q ss_pred CCCEEEEecccccHHHHHHHHHHc-----CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeeh-hh-----h-ccCCCC
Q 003881 470 DGDVLVFASKKTTVDEIESQLAQK-----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA-----A-RGLDIK 537 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~-----~-rGlDI~ 537 (789)
..++||.++++.-+..+...+... ++.+..++|+...... .....+|||+|. .+ . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 347999999999999988888764 4667777776653221 134568999994 22 1 357888
Q ss_pred CccEEEEEcCC-----CCHHHHHHHHhhcCCCCCCCcEEEEEEccccHHHHHHHH
Q 003881 538 SIKSVVNFDIA-----RDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELV 587 (789)
Q Consensus 538 ~v~~VI~~d~p-----~s~~~yiQriGR~gR~G~k~G~~i~lv~~~d~~~~~~lv 587 (789)
.+.+||.=... ......+.++-+..+ ...-+++++..-......+.
T Consensus 235 ~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~----~~~q~i~~SAT~~~~v~~~a 285 (300)
T 3fmo_B 235 KIKVFVLDEADVMIATQGHQDQSIRIQRMLP----RNCQMLLFSATFEDSVWKFA 285 (300)
T ss_dssp GCSEEEETTHHHHHHSTTHHHHHHHHHTTSC----TTCEEEEEESCCCHHHHHHH
T ss_pred hceEEEEeCHHHHhhccCcHHHHHHHHHhCC----CCCEEEEEeccCCHHHHHHH
Confidence 89988852211 223333444444332 23446666655433333333
No 262
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=62.23 E-value=14 Score=41.41 Aligned_cols=16 Identities=25% Similarity=0.486 Sum_probs=14.0
Q ss_pred CCEEEEccCCChhhHH
Q 003881 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll~a~TGsGKTla 278 (789)
+.+++++|+|+|||+.
T Consensus 65 ~GvLL~GppGtGKTtL 80 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHL 80 (499)
T ss_dssp SEEEEECSSSSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4599999999999964
No 263
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=61.63 E-value=22 Score=37.67 Aligned_cols=24 Identities=29% Similarity=0.248 Sum_probs=18.1
Q ss_pred HHHHHHc-----CCCEEEEccCCChhhHH
Q 003881 255 ALPIILS-----GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 255 ~i~~il~-----grdvll~a~TGsGKTla 278 (789)
.+..++. |+-+.++++.|+|||..
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL 147 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQL 147 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHH
Confidence 4555553 45688999999999975
No 264
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=61.41 E-value=9.4 Score=47.66 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=27.4
Q ss_pred EEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcH
Q 003881 265 IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTR 308 (789)
Q Consensus 265 vll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~Ptr 308 (789)
-||.|..|||||.+ ++.-+.+++... ..+..+|+|||..
T Consensus 4 ~lV~agAGSGKT~~-l~~ri~~ll~~~----~~~~~il~lVP~q 42 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKL-IINSIQDELRRA----PFGKPIIFLVPDQ 42 (1166)
T ss_dssp EEEEECTTSSHHHH-HHHHHHHHHHHC----TTSSCEEEECCGG
T ss_pred EEEEeCCCCChHHH-HHHHHHHHHHhC----CCCCcEEEEecCc
Confidence 36889999999986 555555655431 2346789999986
No 265
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=61.38 E-value=7.4 Score=41.63 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=14.7
Q ss_pred cCCCEEEEccCCChhhHH
Q 003881 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla 278 (789)
.+..++++++||||||..
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 344688999999999974
No 266
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=61.24 E-value=9 Score=50.01 Aligned_cols=46 Identities=22% Similarity=0.206 Sum_probs=30.0
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHH
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIY 315 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~ 315 (789)
.++++++++++|+|||..++..+...+ + .|-+++++. ..++..+++
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~-k-------~Ge~~~Fit-~ee~~~~L~ 1125 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQ-R-------EGKTCAFID-AEHALDPIY 1125 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH-T-------TTCCEEEEC-TTSCCCHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-H-------cCCeEEEEE-ccccHHHHH
Confidence 568999999999999986444333333 2 355577774 345555555
No 267
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=59.75 E-value=8.8 Score=45.75 Aligned_cols=71 Identities=13% Similarity=0.293 Sum_probs=48.1
Q ss_pred CCCEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeeh-hhh----cc-C-CCCC
Q 003881 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA----RG-L-DIKS 538 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~~----rG-l-DI~~ 538 (789)
.+++||.|+++.-+..+...|.+. ++.+..+||+.+...+...+. ...+|+|+|. .+. .+ + .+..
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 568999999999888888877765 899999999997665433322 2578999993 232 22 3 5666
Q ss_pred ccEEEE
Q 003881 539 IKSVVN 544 (789)
Q Consensus 539 v~~VI~ 544 (789)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788774
No 268
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=59.40 E-value=7.4 Score=34.51 Aligned_cols=46 Identities=20% Similarity=0.192 Sum_probs=36.1
Q ss_pred HHHhcCCCCCCCCEEEEeccccc--HHHHHHHHHHcCCceeeccCCCC
Q 003881 460 LLEKLPGMIDDGDVLVFASKKTT--VDEIESQLAQKGFKAAALHGDKD 505 (789)
Q Consensus 460 L~~~L~~~~~~~kvLVF~~s~~~--a~~l~~~L~~~g~~v~~lhg~~~ 505 (789)
|...+..+..+.+++|||.+-.. +..++..|...|+.+..|.|++.
T Consensus 61 l~~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 61 LATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp HHHHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred HHHHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 44444444456689999999877 89999999999999888988764
No 269
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=58.68 E-value=10 Score=41.76 Aligned_cols=68 Identities=13% Similarity=0.153 Sum_probs=44.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhc-CCcEEEeChHHHHHHHhhcccccCceeEE
Q 003881 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYL 376 (789)
Q Consensus 298 gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i~~l 376 (789)
+.++||.||++.-|..+++.+++. ++++..++|. ........+.. ..+|+|||. .+. ..+++. +++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~-~R~~~~~~F~~g~~~vLVaT~-----v~e-~GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRK-TFEREYPTIKQKKPDFILATD-----IAE-MGANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSS-SCC--------CCCSEEEESS-----STT-CCTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecch-hHHHHHhhhcCCCceEEEECC-----hhh-eeeccC-ceEE
Confidence 456999999999999988887765 7888888884 33334444444 479999993 333 234566 7776
Q ss_pred E
Q 003881 377 V 377 (789)
Q Consensus 377 V 377 (789)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 6
No 270
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=58.50 E-value=12 Score=41.04 Aligned_cols=54 Identities=17% Similarity=0.074 Sum_probs=40.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhc-CCcEEEeCh
Q 003881 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKA-GCEIVIATP 356 (789)
Q Consensus 298 gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~-~~dIiV~Tp 356 (789)
+.++||+||++.-+..+++.+++. ++++..++|.. .......+.. ..+|+|||.
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~-r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKT-FESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTT-HHHHTTHHHHSCCSEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCcc-HHHHHHhhcCCCCeEEEECc
Confidence 346999999999999888887775 78888888863 3333344443 479999993
No 271
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=58.44 E-value=8.3 Score=43.13 Aligned_cols=71 Identities=14% Similarity=0.352 Sum_probs=50.6
Q ss_pred CCCEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeeh-hhh----cc-C-CCCC
Q 003881 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA----RG-L-DIKS 538 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~~----rG-l-DI~~ 538 (789)
..++||+|+++.-+..+...+... ++.+..+||+.+...+...+. ...+|+|+|. .+. .+ + .+..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 568999999998888887777665 899999999987554432222 1378999993 332 22 3 5667
Q ss_pred ccEEEE
Q 003881 539 IKSVVN 544 (789)
Q Consensus 539 v~~VI~ 544 (789)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 787775
No 272
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=57.74 E-value=9.3 Score=31.88 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=34.4
Q ss_pred hcCCCCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCC
Q 003881 463 KLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKD 505 (789)
Q Consensus 463 ~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~ 505 (789)
.+..... .+++|||.+-..+...+..|...|+.+..+.|++.
T Consensus 47 ~~~~l~~-~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 47 GEHGLPR-RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp TCCCCCS-SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred HHHhCCC-CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 3444445 78999999988899999999999999888888764
No 273
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.77 E-value=22 Score=39.05 Aligned_cols=54 Identities=19% Similarity=0.262 Sum_probs=31.5
Q ss_pred CCCCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHH
Q 003881 222 RPVKTFEDCGFSTQLMHAISKQ---GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~---g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla 278 (789)
+|-.+|++++--....+.|... .+..|--++.-.+ ---+.+|+.+|+|+|||+.
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~---~~prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI---KPPKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTSSHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeEEEECCCCCcHHHH
Confidence 4567899987666666555432 0111111111110 1237899999999999974
No 274
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=56.52 E-value=14 Score=40.32 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=17.0
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHH
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l 287 (789)
+.-++++++||||||.. +-.++..+
T Consensus 167 ggii~I~GpnGSGKTTl-L~allg~l 191 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTT-LYAGLQEL 191 (418)
T ss_dssp SEEEEEECSTTSCHHHH-HHHHHHHH
T ss_pred CCeEEEECCCCCCHHHH-HHHHHhhc
Confidence 34578999999999974 33334433
No 275
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=55.95 E-value=54 Score=33.83 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=13.6
Q ss_pred CCCEEEEccCCChhhHH
Q 003881 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvll~a~TGsGKTla 278 (789)
++-+++++++|+|||..
T Consensus 98 ~~vi~i~G~~G~GKTT~ 114 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTT 114 (297)
T ss_dssp SEEEEEECSSCSSTTHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34577789999999975
No 276
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=55.86 E-value=7.6 Score=49.91 Aligned_cols=120 Identities=18% Similarity=0.309 Sum_probs=66.1
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHH
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~ 341 (789)
|+-+.+.+|.|||||.. ++++++...+ .+..++++.+-..|.... ++++ |+.+
T Consensus 1431 g~~iei~g~~~sGkttl-~~~~~a~~~~-------~g~~~~~i~~e~~~~~~~---~~~~----Gv~~------------ 1483 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTL-TLQVIAAAQR-------EGKTCAFIDAEHALDPIY---ARKL----GVDI------------ 1483 (1706)
T ss_dssp TSEEEEECSTTSSHHHH-HHHHHHHHHH-------TTCCEEEECTTSCCCHHH---HHHT----TCCG------------
T ss_pred CCEEEEEcCCCCCHHHH-HHHHHHHHHh-------cCCeEEEEecCCCCCHHH---HHHc----CCCH------------
Confidence 36689999999999986 5566655433 366688888766665433 4444 4432
Q ss_pred HHHHhcCCcEEEeChHHH---HHHHhhcccccCceeEEEEeccchhccCC----------C-------hHHHHHHHhhcC
Q 003881 342 FKELKAGCEIVIATPGRL---IDMLKMKALTMSRVTYLVLDEADRMFDLG----------F-------EPQIRSIVGQIR 401 (789)
Q Consensus 342 ~~~l~~~~dIiV~Tp~~L---~~~l~~~~~~l~~i~~lVvDEah~m~~~~----------f-------~~~i~~il~~l~ 401 (789)
-+++|.-|..- +..+.. .+.-..+++||||.+-.+.... . ...++++...+.
T Consensus 1484 -------~~l~~~~p~~~e~~l~~~~~-~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~ 1555 (1706)
T 3cmw_A 1484 -------DNLLCSQPDTGEQALEICDA-LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 1555 (1706)
T ss_dssp -------GGCEEECCSSHHHHHHHHHH-HHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHH
T ss_pred -------HHeEEeCCCcHHHHHHHHHH-HHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHH
Confidence 12455555322 222211 1122357889999988664321 1 112333444444
Q ss_pred CCceEEEEeccCcHH
Q 003881 402 PDRQTLLFSATMPRK 416 (789)
Q Consensus 402 ~~~q~ll~SAT~~~~ 416 (789)
...-+++|...+...
T Consensus 1556 ~~~~~~i~~~~~~~~ 1570 (1706)
T 3cmw_A 1556 QSNTLLIFINQIRMK 1570 (1706)
T ss_dssp HHTCEEEEEECBC--
T ss_pred hCCcEEEEeeccccc
Confidence 445566777666543
No 277
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=55.82 E-value=1.1e+02 Score=33.62 Aligned_cols=75 Identities=13% Similarity=0.090 Sum_probs=47.9
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHH---HHHh-cCCcEEEeChHHHHHHHhhcccccCcee
Q 003881 299 PIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF---KELK-AGCEIVIATPGRLIDMLKMKALTMSRVT 374 (789)
Q Consensus 299 p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~---~~l~-~~~dIiV~Tp~~L~~~l~~~~~~l~~i~ 374 (789)
...+|++..+.-+..+.+.+.+ .+.++..++|+.+..+.. ..+. ...+|+|||+..+-. .+++..++
T Consensus 348 ~~~~ivf~~~~~~~~l~~~L~~----~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-----GiDip~v~ 418 (510)
T 2oca_A 348 ENAFVMFKHVSHGKAIFDLIKN----EYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-----GISVKNLH 418 (510)
T ss_dssp CEEEEEESSHHHHHHHHHHHHT----TCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-----SCCCCSEE
T ss_pred CCeEEEEecHHHHHHHHHHHHH----cCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-----ccccccCc
Confidence 3344555545555555444443 356888899988765432 2233 347899999766544 44788899
Q ss_pred EEEEeccc
Q 003881 375 YLVLDEAD 382 (789)
Q Consensus 375 ~lVvDEah 382 (789)
+||+..+.
T Consensus 419 ~vi~~~~~ 426 (510)
T 2oca_A 419 HVVLAHGV 426 (510)
T ss_dssp EEEESSCC
T ss_pred EEEEeCCC
Confidence 99988777
No 278
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=55.00 E-value=11 Score=43.65 Aligned_cols=67 Identities=19% Similarity=0.223 Sum_probs=48.7
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhcCCcEEEeChHHHHHHHhhcccccCceeEE
Q 003881 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYL 376 (789)
Q Consensus 297 ~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~l 376 (789)
.+.++||.|+|+.-+.++++.+++. ++++..++|+....+. ...+.+|||||. .+.+.. ++. +++|
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~er---~~~~~~VLVATd-----VaerGI-DId-V~~V 460 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSVI---PTIGDVVVVATD-----ALMTGY-TGD-FDSV 460 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGGS---CSSSCEEEEECT-----THHHHC-CCC-BSEE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHHH---HhCCCcEEEECC-----hHHccC-CCC-CcEE
Confidence 4567999999999999888777764 7899999999876542 134569999993 444333 344 7766
Q ss_pred E
Q 003881 377 V 377 (789)
Q Consensus 377 V 377 (789)
|
T Consensus 461 I 461 (666)
T 3o8b_A 461 I 461 (666)
T ss_dssp E
T ss_pred E
Confidence 6
No 279
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=54.35 E-value=13 Score=36.32 Aligned_cols=31 Identities=29% Similarity=0.261 Sum_probs=25.9
Q ss_pred CcHHHHHHHHHHHcCCCEEEEccCCChhhHH
Q 003881 248 PTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 248 ptpiQ~~~i~~il~grdvll~a~TGsGKTla 278 (789)
-+.-|..++..+..|.-+.+.++.|+|||+.
T Consensus 8 k~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 8 KTLGQKHYVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp CSHHHHHHHHHHHHCSEEEEECCTTSSTTHH
T ss_pred CCHhHHHHHHhccCCCEEEEECCCCCCHHHH
Confidence 3455777888888999999999999999964
No 280
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=53.90 E-value=28 Score=29.86 Aligned_cols=51 Identities=27% Similarity=0.459 Sum_probs=42.4
Q ss_pred EEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcce
Q 003881 473 VLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHV 523 (789)
Q Consensus 473 vLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~V 523 (789)
.+||...-.-+..+...++..|..+++|+++.+...|.+-++.|....+.|
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdv 55 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDV 55 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCce
Confidence 357777777788888888999999999999999999999999997654443
No 281
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=53.45 E-value=22 Score=39.67 Aligned_cols=50 Identities=12% Similarity=0.007 Sum_probs=29.2
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHH
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLET 318 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~ 318 (789)
.|.-+++.|++|+|||.. ++-++.++..+ .+..++++.-- +-..|+...+
T Consensus 241 ~G~l~li~G~pG~GKT~l-al~~a~~~a~~------~g~~vl~~s~E-~s~~~l~~r~ 290 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTF-VRQQALQWGTA------MGKKVGLAMLE-ESVEETAEDL 290 (503)
T ss_dssp TTCEEEEEESSCHHHHHH-HHHHHHHHTTT------SCCCEEEEESS-SCHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHH-HHHHHHHHHHh------cCCcEEEEecc-CCHHHHHHHH
Confidence 345688899999999974 55555555432 13446666432 2233444433
No 282
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=53.38 E-value=10 Score=36.46 Aligned_cols=55 Identities=18% Similarity=0.320 Sum_probs=35.1
Q ss_pred CCCEEEEecccccHHH-HHHHHHHc---CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeeh
Q 003881 470 DGDVLVFASKKTTVDE-IESQLAQK---GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD 528 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~-l~~~L~~~---g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~ 528 (789)
..++||+|++..-+.. +.+.+... ++.+..++|+.....+...+. ...+|+|+|.
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 5689999999988777 55555443 678999998765432221111 1478999993
No 283
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=53.31 E-value=17 Score=36.30 Aligned_cols=53 Identities=17% Similarity=0.203 Sum_probs=27.7
Q ss_pred CCCCcccCCCCHHHHHHHHHcC--CCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHH
Q 003881 223 PVKTFEDCGFSTQLMHAISKQG--YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 223 pi~sf~~~~l~~~l~~~l~~~g--~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla 278 (789)
+..+|+++.-.+.+.+.+...- +..+..++... +...+.+++.+++|+|||..
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLL 61 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHH
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcC---CCCCCeEEEECcCCCCHHHH
Confidence 3457888766666655554210 00110000000 01135799999999999964
No 284
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=53.22 E-value=24 Score=41.83 Aligned_cols=75 Identities=16% Similarity=0.226 Sum_probs=53.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHhhh-------cCCeEEEEECCCChHHHHHHHh---------cCCcEEEeChHHHHH
Q 003881 298 GPIGVICAPTRELAHQIYLETKKFAKS-------HGIRVSAVYGGMSKLDQFKELK---------AGCEIVIATPGRLID 361 (789)
Q Consensus 298 gp~vLIl~PtreLa~Qi~~~~~~~~~~-------~~i~v~~~~gg~~~~~~~~~l~---------~~~dIiV~Tp~~L~~ 361 (789)
+..+||.||++.-+..+++.+.+.+.. .++.+..++|+.+..++...+. ....|||||.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~----- 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN----- 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----
Confidence 567999999999999998888864322 4788999999988766544332 1368999993
Q ss_pred HHhhcccccCceeEEEE
Q 003881 362 MLKMKALTMSRVTYLVL 378 (789)
Q Consensus 362 ~l~~~~~~l~~i~~lVv 378 (789)
.+.. .+++..+.+||-
T Consensus 378 iae~-GidIp~v~~VId 393 (773)
T 2xau_A 378 IAET-SLTIDGIVYVVD 393 (773)
T ss_dssp HHHH-TCCCTTEEEEEE
T ss_pred HHHh-CcCcCCeEEEEe
Confidence 3332 346778887764
No 285
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=52.66 E-value=5 Score=34.07 Aligned_cols=37 Identities=19% Similarity=0.329 Sum_probs=32.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCC
Q 003881 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKD 505 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~ 505 (789)
...+++|||.+-..+...+..|...|+++..+.|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 4568999999988899999999999999999988754
No 286
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=52.04 E-value=5.7 Score=35.32 Aligned_cols=38 Identities=13% Similarity=0.259 Sum_probs=32.2
Q ss_pred CC-CCEEEEe-cccccHHHHHHHHHHcCCceeeccCCCCH
Q 003881 469 DD-GDVLVFA-SKKTTVDEIESQLAQKGFKAAALHGDKDQ 506 (789)
Q Consensus 469 ~~-~kvLVF~-~s~~~a~~l~~~L~~~g~~v~~lhg~~~~ 506 (789)
.. .++|||| .+-..+..++..|...|+.+..|.|++..
T Consensus 87 ~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 87 LNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp TTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred cCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 44 6899999 57778889999999999999999998754
No 287
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=51.76 E-value=12 Score=39.01 Aligned_cols=23 Identities=30% Similarity=0.235 Sum_probs=18.7
Q ss_pred HHHHHcCCCEEEEccCCChhhHH
Q 003881 256 LPIILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 256 i~~il~grdvll~a~TGsGKTla 278 (789)
+..+..+.++++.+++|+|||..
T Consensus 40 ~~~l~~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 40 LIGICTGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp HHHHHHTCCEEEESCCCHHHHHH
T ss_pred HHHHHcCCeEEEECCCCCcHHHH
Confidence 34455688999999999999964
No 288
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=51.62 E-value=34 Score=40.63 Aligned_cols=70 Identities=10% Similarity=0.083 Sum_probs=52.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHH----cCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeeh-hh-----h-------
Q 003881 469 DDGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA-----A------- 531 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~----~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~-----~------- 531 (789)
.+.+++|.+++..-|.++++.+.. .++.+.++.|+++..+|.... .+.|+|+|. .+ .
T Consensus 123 ~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~~~ 196 (844)
T 1tf5_A 123 TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVLYK 196 (844)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhcch
Confidence 345899999999998888777654 489999999999987665543 378999994 33 1
Q ss_pred ccCCCCCccEEEE
Q 003881 532 RGLDIKSIKSVVN 544 (789)
Q Consensus 532 rGlDI~~v~~VI~ 544 (789)
..+++..++++|.
T Consensus 197 ~~l~lr~~~~lVl 209 (844)
T 1tf5_A 197 EQMVQRPLHFAVI 209 (844)
T ss_dssp GGCCCCCCCEEEE
T ss_pred hhhcccCCCEEEE
Confidence 1366777887774
No 289
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=51.59 E-value=6 Score=33.74 Aligned_cols=37 Identities=11% Similarity=0.198 Sum_probs=32.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCC
Q 003881 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKD 505 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~ 505 (789)
...+++|||.+-..+...+..|...|+.+..+.|++.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 4568999999998999999999999999999988753
No 290
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=51.47 E-value=5.7 Score=34.24 Aligned_cols=38 Identities=11% Similarity=0.179 Sum_probs=32.4
Q ss_pred CCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCC
Q 003881 467 MIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDK 504 (789)
Q Consensus 467 ~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~ 504 (789)
+..+.+++|||.+-..+...+..|.+.|+.+..+.|++
T Consensus 53 l~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 53 FNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred hcCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 33456899999998889999999999999988888875
No 291
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=51.35 E-value=56 Score=36.58 Aligned_cols=125 Identities=14% Similarity=0.193 Sum_probs=61.2
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHH
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~ 340 (789)
.|.-+++.+++|+|||.. +..++..+ .. .+.+++++++... ..|+...+.. .++. ..
T Consensus 280 ~G~i~~i~G~~GsGKSTL-l~~l~g~~-~~------~G~~vi~~~~ee~-~~~l~~~~~~----~g~~---------~~- 336 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLL-VSRFVENA-CA------NKERAILFAYEES-RAQLLRNAYS----WGMD---------FE- 336 (525)
T ss_dssp SSCEEEEEECTTSSHHHH-HHHHHHHH-HT------TTCCEEEEESSSC-HHHHHHHHHT----TSCC---------HH-
T ss_pred CCcEEEEEeCCCCCHHHH-HHHHHHHH-Hh------CCCCEEEEEEeCC-HHHHHHHHHH----cCCC---------HH-
Confidence 456788999999999974 22222222 11 2334666665422 2344443322 1221 11
Q ss_pred HHHHHhcCCcEEE-------eChHHHHHHHhhcccccCceeEEEEeccchhccCC-----ChHHHHHHHhhcCC-CceEE
Q 003881 341 QFKELKAGCEIVI-------ATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG-----FEPQIRSIVGQIRP-DRQTL 407 (789)
Q Consensus 341 ~~~~l~~~~dIiV-------~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~m~~~~-----f~~~i~~il~~l~~-~~q~l 407 (789)
... ..+ .+.+ .+.+.....+.... ...+.++|||| -=.-++.. ....+..++..+.. ..-+|
T Consensus 337 ~~~--~~g-~~~~~~~~p~~LS~g~~q~~~~a~~-l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvi 411 (525)
T 1tf7_A 337 EME--RQN-LLKIVCAYPESAGLEDHLQIIKSEI-NDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGL 411 (525)
T ss_dssp HHH--HTT-SEEECCCCGGGSCHHHHHHHHHHHH-HTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHH--hCC-CEEEEEeccccCCHHHHHHHHHHHH-HhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEE
Confidence 111 111 1111 14444444433322 24567899999 65556665 45555566655543 34445
Q ss_pred EEeccC
Q 003881 408 LFSATM 413 (789)
Q Consensus 408 l~SAT~ 413 (789)
+.|...
T Consensus 412 lvsh~~ 417 (525)
T 1tf7_A 412 FTNTSD 417 (525)
T ss_dssp EEEECS
T ss_pred EEECcc
Confidence 555443
No 292
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=51.26 E-value=17 Score=44.07 Aligned_cols=71 Identities=13% Similarity=0.293 Sum_probs=46.9
Q ss_pred CCCEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeeh-hhh----cc-C-CCCC
Q 003881 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA----RG-L-DIKS 538 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~~----rG-l-DI~~ 538 (789)
.+++||.|+++.-+..+...|.+. ++.+..+||+.+...+...+. ...+|+|+|. .+. ++ + .+..
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 371 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH----HHCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc----cCCCEEEecHHHHHHHHHcCccccccC
Confidence 568999999998888887777664 899999999987654332222 1378999993 332 22 3 5666
Q ss_pred ccEEEE
Q 003881 539 IKSVVN 544 (789)
Q Consensus 539 v~~VI~ 544 (789)
+++||.
T Consensus 372 ~~liVi 377 (936)
T 4a2w_A 372 FTLMIF 377 (936)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777774
No 293
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=50.92 E-value=37 Score=34.73 Aligned_cols=70 Identities=16% Similarity=0.216 Sum_probs=51.1
Q ss_pred CCCEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeeh-hhh-----ccCCCCCc
Q 003881 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA-----RGLDIKSI 539 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~~-----rGlDI~~v 539 (789)
..++||.++++.-+..+++.+.+. +..+..++|+.........+ . ..+|+|+|. .+. ..+++..+
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRV---R--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHH---T--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhc---C--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 568999999999999998888764 57899999999876544333 2 378999993 222 23466677
Q ss_pred cEEEE
Q 003881 540 KSVVN 544 (789)
Q Consensus 540 ~~VI~ 544 (789)
++||.
T Consensus 131 ~~iVi 135 (337)
T 2z0m_A 131 EIVII 135 (337)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 77764
No 294
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=50.83 E-value=15 Score=42.74 Aligned_cols=68 Identities=16% Similarity=0.203 Sum_probs=46.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhc-CCcEEEeChHHHHHHHhhcccccCceeEE
Q 003881 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYL 376 (789)
Q Consensus 298 gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i~~l 376 (789)
+.++||.||++.-+..+++.+++. ++++..++|. ........+.. ..+|||||. .+.. -+++. +.+|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaTd-----v~e~-GIDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRK-SYDTEYPKCKNGDWDFVITTD-----ISEM-GANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSS-SHHHHGGGGGTCCCSEEEECG-----GGGT-TCCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChH-HHHHHHHHHHCCCceEEEECc-----hhhc-ceeeC-CcEE
Confidence 567999999999998887777654 7888988884 33333333333 478999993 3433 33455 6665
Q ss_pred E
Q 003881 377 V 377 (789)
Q Consensus 377 V 377 (789)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 5
No 295
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=50.22 E-value=16 Score=39.37 Aligned_cols=42 Identities=24% Similarity=0.358 Sum_probs=28.1
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHH
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTREL 310 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreL 310 (789)
.+.+++++++||+|||.. +-.++..+.. .+.+++|+=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~-~~~~~~~~~~-------~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFT-AKMLLLREYM-------QGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHH-HHHHHHHHHT-------TTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHH-HHHHHHHHHH-------CCCEEEEEeCCcCH
Confidence 457899999999999975 3333333322 35667888787553
No 296
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=50.17 E-value=17 Score=48.98 Aligned_cols=48 Identities=23% Similarity=0.260 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHcCCCCCcHHHH----HHHHHHHcCCCEEEEccCCChhhHHHH
Q 003881 232 FSTQLMHAISKQGYEKPTSIQC----QALPIILSGRDIIGIAKTGSGKTAAFV 280 (789)
Q Consensus 232 l~~~l~~~l~~~g~~~ptpiQ~----~~i~~il~grdvll~a~TGsGKTla~l 280 (789)
+...+.+.+.+.++. +++.+. |....+...+.++++||||+|||.++-
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 445566777777774 555552 233444567789999999999997643
No 297
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=49.94 E-value=12 Score=39.51 Aligned_cols=42 Identities=17% Similarity=0.082 Sum_probs=27.1
Q ss_pred CEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHH
Q 003881 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (789)
Q Consensus 264 dvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa 311 (789)
-+++.++.|+|||.. ++.++..+.+. ..+.+++++..-..+.
T Consensus 30 iteI~G~pGsGKTtL-~Lq~~~~~~~~-----g~g~~vlyId~E~s~~ 71 (333)
T 3io5_A 30 LLILAGPSKSFKSNF-GLTMVSSYMRQ-----YPDAVCLFYDSEFGIT 71 (333)
T ss_dssp EEEEEESSSSSHHHH-HHHHHHHHHHH-----CTTCEEEEEESSCCCC
T ss_pred eEEEECCCCCCHHHH-HHHHHHHHHhc-----CCCceEEEEeccchhh
Confidence 478899999999975 55555554321 1245688886654443
No 298
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=49.45 E-value=15 Score=41.32 Aligned_cols=39 Identities=26% Similarity=0.164 Sum_probs=25.8
Q ss_pred HHHHHcCCCCCcHHHHHHHHH-HHcCCCEEEEccCCChhhHH
Q 003881 238 HAISKQGYEKPTSIQCQALPI-ILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 238 ~~l~~~g~~~ptpiQ~~~i~~-il~grdvll~a~TGsGKTla 278 (789)
..|.+.|. +++.+...+.. +..+..++++++||||||..
T Consensus 237 ~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 237 IDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 34444442 34445555544 34778899999999999974
No 299
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=49.43 E-value=18 Score=40.55 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=21.3
Q ss_pred HHHHHHHHcCCCEEEEccCCChhhHH
Q 003881 253 CQALPIILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 253 ~~~i~~il~grdvll~a~TGsGKTla 278 (789)
..++-.+..+.++++.+++|+|||..
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHH
Confidence 44555667889999999999999964
No 300
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=49.38 E-value=5.1 Score=46.80 Aligned_cols=70 Identities=16% Similarity=0.350 Sum_probs=48.0
Q ss_pred CCEEEEecccccHHHH-HHHHHHcC---CceeeccCCCCHHHHHHHHHHhhcCCcceEEee-hhhhc-----------cC
Q 003881 471 GDVLVFASKKTTVDEI-ESQLAQKG---FKAAALHGDKDQASRMEILQKFKSGVYHVLIAT-DVAAR-----------GL 534 (789)
Q Consensus 471 ~kvLVF~~s~~~a~~l-~~~L~~~g---~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT-~v~~r-----------Gl 534 (789)
+++||.++++.-+..+ .+.|.+.. +.+..+||+....++...+. +..+|||+| ..+.. .+
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~ 132 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAGV 132 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------CC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccce
Confidence 6899999999988888 88887653 89999999987654433332 468999999 33432 24
Q ss_pred CCCCccEEEE
Q 003881 535 DIKSIKSVVN 544 (789)
Q Consensus 535 DI~~v~~VI~ 544 (789)
.+..+++||.
T Consensus 133 ~~~~~~lvVi 142 (699)
T 4gl2_A 133 QLSDFSLIII 142 (699)
T ss_dssp CGGGCSEEEE
T ss_pred ecccCcEEEE
Confidence 6677888875
No 301
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.14 E-value=8 Score=42.41 Aligned_cols=54 Identities=19% Similarity=0.321 Sum_probs=32.2
Q ss_pred CCCCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHH
Q 003881 222 RPVKTFEDCGFSTQLMHAISKQ---GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~---g~~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla 278 (789)
.|-.+|++++=-+.+.+.|... .+..|--++...++ .-+.+|+.+|.|+|||+.
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~---~prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIK---PPKGVILYGAPGTGKTLL 232 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC---CCSEEEEESSTTTTHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCCCceECCCCchHHHH
Confidence 4567899987555555555432 11223222222211 236899999999999974
No 302
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=48.85 E-value=33 Score=39.94 Aligned_cols=74 Identities=15% Similarity=0.257 Sum_probs=53.4
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChH---HHHHHHhc---CCcEEEeChHHHHHHHhhcccccCce
Q 003881 300 IGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKL---DQFKELKA---GCEIVIATPGRLIDMLKMKALTMSRV 373 (789)
Q Consensus 300 ~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~---~~~~~l~~---~~dIiV~Tp~~L~~~l~~~~~~l~~i 373 (789)
..+|+|+++.-+.++.+.+.+. ++.+..+||+.+.. .+...+.. ..+|||||. .+. ..+++ .+
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~e-~GlDi-~v 390 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AIG-MGLNL-SI 390 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GGG-SSCCC-CB
T ss_pred CCEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HHH-CCcCc-Cc
Confidence 3467799988888777777664 78999999999876 34445553 379999994 443 34467 89
Q ss_pred eEEEEeccchh
Q 003881 374 TYLVLDEADRM 384 (789)
Q Consensus 374 ~~lVvDEah~m 384 (789)
.+||+-.+.+.
T Consensus 391 ~~VI~~~~~k~ 401 (677)
T 3rc3_A 391 RRIIFYSLIKP 401 (677)
T ss_dssp SEEEESCSBC-
T ss_pred cEEEECCcccc
Confidence 99998887654
No 303
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=48.33 E-value=27 Score=36.94 Aligned_cols=18 Identities=44% Similarity=0.534 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCChhhHH
Q 003881 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla 278 (789)
....+++.+|+|+|||..
T Consensus 50 ~~~~vll~GppGtGKT~l 67 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLL 67 (363)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 346899999999999974
No 304
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=48.21 E-value=36 Score=34.61 Aligned_cols=17 Identities=41% Similarity=0.591 Sum_probs=15.2
Q ss_pred CCCEEEEccCCChhhHH
Q 003881 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvll~a~TGsGKTla 278 (789)
...+++.+++|+|||..
T Consensus 50 ~~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEI 66 (310)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 57899999999999964
No 305
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=48.17 E-value=11 Score=38.05 Aligned_cols=18 Identities=22% Similarity=0.422 Sum_probs=15.8
Q ss_pred cCCCEEEEccCCChhhHH
Q 003881 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla 278 (789)
....+++.+++|+|||..
T Consensus 28 ~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELI 45 (265)
T ss_dssp SCSCEEEECCTTSCHHHH
T ss_pred CCCCEEEECCCCCcHHHH
Confidence 567899999999999964
No 306
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=47.73 E-value=38 Score=31.73 Aligned_cols=65 Identities=11% Similarity=0.334 Sum_probs=51.3
Q ss_pred CCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeehhhhccCCCCCccEEEEEcCCC
Q 003881 470 DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIAR 549 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDI~~v~~VI~~d~p~ 549 (789)
.+.+-|.|.+...+..|...|...++.+..+..+.. .| .-.|.|.|--.+.|+.+ ++||.+++..
T Consensus 61 ~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~---------~~---~~~v~v~t~~~~KGlEf---~~V~~~~~~~ 125 (174)
T 3dmn_A 61 RDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ---------RL---APGVIVVPSFLAKGLEF---DAVIVWNANQ 125 (174)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC----------CC---CSSEEEEEGGGCTTCCE---EEEEEETCBT
T ss_pred CCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc---------cc---CCCeEEEEccccCCcCC---CEEEEecCCc
Confidence 457999999999999999999999999888876542 12 24699999888999987 6777777543
No 307
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=47.43 E-value=18 Score=32.12 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=32.7
Q ss_pred CCCCCEEEEecccccHHHHHHHHHHcCCc-eeeccCCCC
Q 003881 468 IDDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKD 505 (789)
Q Consensus 468 ~~~~kvLVF~~s~~~a~~l~~~L~~~g~~-v~~lhg~~~ 505 (789)
....++||||.+-..+..++..|...|+. +..|.|++.
T Consensus 80 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 80 GQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp CTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 34568999999988899999999999985 888999874
No 308
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=47.42 E-value=26 Score=34.38 Aligned_cols=75 Identities=17% Similarity=0.127 Sum_probs=41.5
Q ss_pred hhcCCCHHHHHHHHHHcCceeccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC----CCEEEEcc
Q 003881 195 SISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG----RDIIGIAK 270 (789)
Q Consensus 195 ~i~~~s~~~~~~~r~~~~i~v~~~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~il~g----rdvll~a~ 270 (789)
.+..|+-.+|-..+-+.- .+. +=...+.+.|+-+++ .+..+ ...+..++.+ +.+|+.+|
T Consensus 4 ~~~~m~~~~~i~~~~~~~---~~~------------~~w~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GP 66 (212)
T 1tue_A 4 FGSGSNMSQWIRFRCSKI---DEG------------GDWRPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGP 66 (212)
T ss_dssp --CCSCHHHHHHHHHHTS---CSC------------CCSHHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESC
T ss_pred HHHhcCHHHHHHHHHHHc---cCC------------CCHHHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECC
Confidence 456778777876664321 111 112355566654443 34444 4445555544 24888999
Q ss_pred CCChhhHHHHHHHHHHH
Q 003881 271 TGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 271 TGsGKTla~llpil~~l 287 (789)
.|+|||.. ++.++.++
T Consensus 67 PGtGKTt~-a~ala~~l 82 (212)
T 1tue_A 67 ANTGKSYF-GMSFIHFI 82 (212)
T ss_dssp GGGCHHHH-HHHHHHHH
T ss_pred CCCCHHHH-HHHHHHHh
Confidence 99999974 44444443
No 309
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=47.25 E-value=26 Score=35.73 Aligned_cols=43 Identities=14% Similarity=0.197 Sum_probs=28.5
Q ss_pred HHHHHHHHHcCCCCCcHHHHHH-HHHHHcCC-----CEEEEccCCChhhHHH
Q 003881 234 TQLMHAISKQGYEKPTSIQCQA-LPIILSGR-----DIIGIAKTGSGKTAAF 279 (789)
Q Consensus 234 ~~l~~~l~~~g~~~ptpiQ~~~-i~~il~gr-----dvll~a~TGsGKTla~ 279 (789)
..+.+.|+-+||. |++... +...+.++ .+++.+|.|+|||+.+
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 3677788777775 444332 33444443 4888999999999753
No 310
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=46.98 E-value=12 Score=32.03 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=32.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHHcCCc-eeeccCCCCH
Q 003881 469 DDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKDQ 506 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~-v~~lhg~~~~ 506 (789)
...+++|||.+-..+..++..|...|+. +..|.|++..
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHH
Confidence 4568999999988999999999999995 8889888643
No 311
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=45.48 E-value=16 Score=42.54 Aligned_cols=70 Identities=16% Similarity=0.379 Sum_probs=49.8
Q ss_pred CCEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeeh-hhh----cc-C-CCCCc
Q 003881 471 GDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA----RG-L-DIKSI 539 (789)
Q Consensus 471 ~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~~----rG-l-DI~~v 539 (789)
+++||.++++.-+....+.+.+. ++.+..++|+.+...+...+. . ..+|+|+|. .+. .+ + ++..+
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~---~-~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIV---E-NNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHH---H-TCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhc---c-CCCEEEECHHHHHHHHhcCcccccccc
Confidence 68999999998888888887765 789999999886433222221 2 478999993 332 33 3 56777
Q ss_pred cEEEE
Q 003881 540 KSVVN 544 (789)
Q Consensus 540 ~~VI~ 544 (789)
++||.
T Consensus 138 ~~vVi 142 (696)
T 2ykg_A 138 TLMIF 142 (696)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88875
No 312
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=45.23 E-value=32 Score=34.97 Aligned_cols=46 Identities=17% Similarity=0.241 Sum_probs=29.1
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHH---------HcCCCEEEEccCCChhhHH
Q 003881 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPII---------LSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 223 pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~~i~~i---------l~grdvll~a~TGsGKTla 278 (789)
+-.+|.++.-...+.+.|...- ..+.. ...+.+++.+|+|+|||..
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i----------~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l 70 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMV----------ILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLL 70 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHT----------HHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHH----------HhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHH
Confidence 4467888766666666654320 01110 1247899999999999975
No 313
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=44.64 E-value=25 Score=41.67 Aligned_cols=70 Identities=7% Similarity=-0.015 Sum_probs=51.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHH----cCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeeh-hh-----hcc-----
Q 003881 469 DDGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA-----ARG----- 533 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~----~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~-----~rG----- 533 (789)
.+.+++|.|+|..-|.++++.+.. .++.+.++.|+++...|.... .+.|+|+|. .+ ..+
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~~~~ 187 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDNMAFSP 187 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhhccH
Confidence 345899999999988877776654 489999999999986655443 378999994 22 222
Q ss_pred --CCCCCccEEEE
Q 003881 534 --LDIKSIKSVVN 544 (789)
Q Consensus 534 --lDI~~v~~VI~ 544 (789)
+....+.++|.
T Consensus 188 ~~~~~~~l~~lVl 200 (853)
T 2fsf_A 188 EERVQRKLHYALV 200 (853)
T ss_dssp GGCCCCSCCEEEE
T ss_pred hHhcccCCcEEEE
Confidence 55677787774
No 314
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=43.87 E-value=12 Score=35.86 Aligned_cols=18 Identities=28% Similarity=0.233 Sum_probs=15.8
Q ss_pred cCCCEEEEccCCChhhHH
Q 003881 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla 278 (789)
.++.+++++++|+|||..
T Consensus 24 ~~~~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTL 41 (199)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 567899999999999975
No 315
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=43.76 E-value=14 Score=39.45 Aligned_cols=20 Identities=40% Similarity=0.469 Sum_probs=17.4
Q ss_pred HHcCCCEEEEccCCChhhHH
Q 003881 259 ILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 259 il~grdvll~a~TGsGKTla 278 (789)
+..|..++++++||+|||..
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 45788999999999999974
No 316
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=43.33 E-value=41 Score=33.28 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=32.5
Q ss_pred CCCCCcccCCCCHHHHHHHHHcC--CCCCcHHHHHHHHHHH--cCCCEEEEccCCChhhHHHHHHHHHHH
Q 003881 222 RPVKTFEDCGFSTQLMHAISKQG--YEKPTSIQCQALPIIL--SGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~g--~~~ptpiQ~~~i~~il--~grdvll~a~TGsGKTla~llpil~~l 287 (789)
.|-.+|+++.-.+.....+...- |.. ...+..+- -.+.+++.+++|+|||.. +-++...
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~~~~-----~~~~~~~~~~~~~g~ll~G~~G~GKTtl--~~~i~~~ 72 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEFLKN-----PSRFHEMGARIPKGVLLVGPPGVGKTHL--ARAVAGE 72 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHHHHC-----HHHHHHTTCCCCSEEEEECCTTSSHHHH--HHHHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHHC-----HHHHHHcCCCCCCeEEEECCCCCCHHHH--HHHHHHH
Confidence 45567888866666655554321 111 11121111 124589999999999964 3444443
No 317
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=42.76 E-value=18 Score=39.67 Aligned_cols=82 Identities=11% Similarity=0.176 Sum_probs=55.4
Q ss_pred EecCCCcccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCc-eeeccCCCCHHHHHHHHHHhhcCCcceEEe
Q 003881 448 HVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKDQASRMEILQKFKSGVYHVLIA 526 (789)
Q Consensus 448 ~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~-v~~lhg~~~~~eR~~~l~~F~~G~~~VLVa 526 (789)
...+....|-...+..+... ..++||.|+++.-+....+.|.+.++. +..+||+... ..+|+|+
T Consensus 113 l~~~TGsGKT~~~l~~i~~~--~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-------------~~~Ivv~ 177 (472)
T 2fwr_A 113 IVLPTGSGKTHVAMAAINEL--STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPLTVS 177 (472)
T ss_dssp EECCTTSCHHHHHHHHHHHH--CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC-------------CCSEEEE
T ss_pred EEeCCCCCHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC-------------cCCEEEE
Confidence 33445556654444333332 569999999999999999999888888 9999998752 4689999
Q ss_pred eh-hhhccCC-C-CCccEEEE
Q 003881 527 TD-VAARGLD-I-KSIKSVVN 544 (789)
Q Consensus 527 T~-v~~rGlD-I-~~v~~VI~ 544 (789)
|. .+..-++ + ..+.+||.
T Consensus 178 T~~~l~~~~~~~~~~~~liIv 198 (472)
T 2fwr_A 178 TYDSAYVNAEKLGNRFMLLIF 198 (472)
T ss_dssp EHHHHHHTHHHHTTTCSEEEE
T ss_pred EcHHHHHHHHHhcCCCCEEEE
Confidence 93 3333221 1 23566664
No 318
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=42.66 E-value=8.9 Score=48.51 Aligned_cols=44 Identities=20% Similarity=0.348 Sum_probs=32.5
Q ss_pred cCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEeccC
Q 003881 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (789)
Q Consensus 370 l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT~ 413 (789)
+++-.+||+|||---+|..-+..+...+..+..++-+|+.+.-+
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRL 1276 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRL 1276 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSS
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCH
Confidence 45567899999987777766777888887777777666666544
No 319
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=42.62 E-value=12 Score=35.35 Aligned_cols=18 Identities=11% Similarity=0.326 Sum_probs=15.3
Q ss_pred cCCCEEEEccCCChhhHH
Q 003881 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla 278 (789)
.|+-+++++|+|+|||..
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466788999999999974
No 320
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=42.40 E-value=9.7 Score=35.53 Aligned_cols=17 Identities=29% Similarity=0.292 Sum_probs=14.5
Q ss_pred CCCEEEEccCCChhhHH
Q 003881 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvll~a~TGsGKTla 278 (789)
++-+++++++|||||.+
T Consensus 3 ~~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGI 19 (178)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45688999999999975
No 321
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=42.13 E-value=17 Score=38.86 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=18.8
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003881 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ~i~~il~grdv--ll~a~TGsGKTla 278 (789)
.+..++.|.|+ +..++||||||..
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyT 121 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYT 121 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEE
Confidence 46677888874 5568999999976
No 322
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=41.52 E-value=13 Score=39.41 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=13.8
Q ss_pred CCEEEEccCCChhhHH
Q 003881 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll~a~TGsGKTla 278 (789)
+-++|++|||+|||..
T Consensus 41 ~lIvI~GPTgsGKTtL 56 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRL 56 (339)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 3588999999999975
No 323
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=40.82 E-value=9.9 Score=35.69 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=16.3
Q ss_pred HcCCCEEEEccCCChhhHH
Q 003881 260 LSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 260 l~grdvll~a~TGsGKTla 278 (789)
..++.+++++++|+|||.+
T Consensus 9 ~~~~~i~i~G~~GsGKst~ 27 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTL 27 (180)
T ss_dssp CCCCCEEEECSTTSSHHHH
T ss_pred ccCCeEEEEeCCCCCHHHH
Confidence 3567899999999999975
No 324
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=40.80 E-value=17 Score=45.01 Aligned_cols=65 Identities=15% Similarity=0.120 Sum_probs=50.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceEEee-----hhhhcc-CCCCCccEE
Q 003881 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT-----DVAARG-LDIKSIKSV 542 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT-----~v~~rG-lDI~~v~~V 542 (789)
...++||.++++.-+..++..|.+....+..++|+++ .++..+|||+| +.+.++ ..+..+.+|
T Consensus 226 ~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lV 294 (1108)
T 3l9o_A 226 NKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVMREVAWV 294 (1108)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEE
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCccccccCCEE
Confidence 4568999999999999999999887668999999987 34568899999 344444 335566776
Q ss_pred EE
Q 003881 543 VN 544 (789)
Q Consensus 543 I~ 544 (789)
|.
T Consensus 295 VI 296 (1108)
T 3l9o_A 295 IF 296 (1108)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 325
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=40.70 E-value=15 Score=34.56 Aligned_cols=17 Identities=35% Similarity=0.384 Sum_probs=14.8
Q ss_pred CCCEEEEccCCChhhHH
Q 003881 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvll~a~TGsGKTla 278 (789)
.+.+++++++|||||.+
T Consensus 5 ~~~i~l~G~~GsGKst~ 21 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSV 21 (185)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 46789999999999975
No 326
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=40.60 E-value=21 Score=39.21 Aligned_cols=68 Identities=16% Similarity=0.177 Sum_probs=45.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhc-CCcEEEeChHHHHHHHhhcccccCceeEE
Q 003881 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYL 376 (789)
Q Consensus 298 gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i~~l 376 (789)
+.++||.||++.-|.++++.+++. ++.+..+++.... ..+..+.. ..+|||||. .+.. .+++.. .+|
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~-~~~~~f~~g~~~vLVaT~-----v~~~-GiDip~-~~V 255 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFD-TEYPKTKLTDWDFVVTTD-----ISEM-GANFRA-GRV 255 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHH-HHGGGGGSSCCSEEEECG-----GGGS-SCCCCC-SEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHH-HHHHhhccCCceEEEECC-----HHHh-CcCCCC-CEE
Confidence 346999999999998888777654 7888888876542 22233333 479999993 4433 334555 555
Q ss_pred E
Q 003881 377 V 377 (789)
Q Consensus 377 V 377 (789)
|
T Consensus 256 I 256 (451)
T 2jlq_A 256 I 256 (451)
T ss_dssp E
T ss_pred E
Confidence 5
No 327
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=40.12 E-value=20 Score=37.81 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=18.5
Q ss_pred HHHHHHcCCC--EEEEccCCChhhHH
Q 003881 255 ALPIILSGRD--IIGIAKTGSGKTAA 278 (789)
Q Consensus 255 ~i~~il~grd--vll~a~TGsGKTla 278 (789)
.+..++.|.| ++..++||||||..
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyT 94 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHT 94 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceE
Confidence 4566778887 45568999999976
No 328
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=39.92 E-value=41 Score=30.52 Aligned_cols=37 Identities=8% Similarity=0.081 Sum_probs=31.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHHcCC-ceeeccCCCC
Q 003881 469 DDGDVLVFASKKTTVDEIESQLAQKGF-KAAALHGDKD 505 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~-~v~~lhg~~~ 505 (789)
...++||||.+-..+..++..|...|+ .+..|.|++.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 456899999998888999999999999 5889999874
No 329
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=39.82 E-value=20 Score=38.92 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=19.3
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003881 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ~i~~il~grdv--ll~a~TGsGKTla 278 (789)
.+..++.|.|+ +..++||||||..
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyT 157 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFT 157 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceE
Confidence 57778899875 4568999999976
No 330
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=39.80 E-value=29 Score=35.95 Aligned_cols=18 Identities=22% Similarity=0.374 Sum_probs=15.7
Q ss_pred cCCCEEEEccCCChhhHH
Q 003881 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla 278 (789)
....+++.+++|+|||..
T Consensus 24 ~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELV 41 (304)
T ss_dssp TTSCEEEESCTTSCHHHH
T ss_pred CCCcEEEECCCCchHHHH
Confidence 457899999999999964
No 331
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=39.58 E-value=12 Score=34.28 Aligned_cols=15 Identities=33% Similarity=0.352 Sum_probs=13.0
Q ss_pred CEEEEccCCChhhHH
Q 003881 264 DIIGIAKTGSGKTAA 278 (789)
Q Consensus 264 dvll~a~TGsGKTla 278 (789)
-+++++++|||||..
T Consensus 3 ~I~l~G~~GsGKsT~ 17 (179)
T 3lw7_A 3 VILITGMPGSGKSEF 17 (179)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 468899999999975
No 332
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=39.50 E-value=17 Score=35.04 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=17.4
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHH
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l 287 (789)
.++-+++++|+|+|||.. +-+|..+
T Consensus 3 ~g~~i~lvGpsGaGKSTL--l~~L~~~ 27 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL--LKKLFQE 27 (198)
T ss_dssp --CCEEEECCTTSSHHHH--HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHhh
Confidence 467899999999999974 4444443
No 333
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=39.43 E-value=12 Score=35.06 Aligned_cols=17 Identities=18% Similarity=0.352 Sum_probs=14.7
Q ss_pred CCCEEEEccCCChhhHH
Q 003881 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvll~a~TGsGKTla 278 (789)
+.-+++++++|||||.+
T Consensus 3 ~~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTS 19 (192)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 56689999999999975
No 334
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=39.37 E-value=96 Score=31.34 Aligned_cols=94 Identities=18% Similarity=0.244 Sum_probs=58.7
Q ss_pred CCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHH---HHHHhc
Q 003881 271 TGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ---FKELKA 347 (789)
Q Consensus 271 TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~---~~~l~~ 347 (789)
..++|..+ ++-++..+.. .+.++||.+.++..+..+...+.+. .++.+..++|+.+..+. +..+..
T Consensus 93 ~~s~K~~~-L~~ll~~~~~-------~~~kvlIFs~~~~~~~~l~~~L~~~---~g~~~~~l~G~~~~~~R~~~i~~F~~ 161 (271)
T 1z5z_A 93 RRSGKMIR-TMEIIEEALD-------EGDKIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYGELSKKERDDIISKFQN 161 (271)
T ss_dssp TTCHHHHH-HHHHHHHHHH-------TTCCEEEEESCHHHHHHHHHHHHHH---HCSCCCEECTTSCHHHHHHHHHHHHH
T ss_pred ccCHHHHH-HHHHHHHHHh-------CCCeEEEEeccHHHHHHHHHHHHHh---cCCcEEEEECCCCHHHHHHHHHHhcC
Confidence 45788864 5556655532 3567999999998888777666653 27888889998875433 333343
Q ss_pred C--Cc-EEEeChHHHHHHHhhcccccCceeEEEEecc
Q 003881 348 G--CE-IVIATPGRLIDMLKMKALTMSRVTYLVLDEA 381 (789)
Q Consensus 348 ~--~d-IiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEa 381 (789)
+ +. ++++|- . -...+++..+++||+=+.
T Consensus 162 ~~~~~v~L~st~-----~-~g~Glnl~~a~~VI~~d~ 192 (271)
T 1z5z_A 162 NPSVKFIVLSVK-----A-GGFGINLTSANRVIHFDR 192 (271)
T ss_dssp CTTCCEEEEECC-----T-TCCCCCCTTCSEEEECSC
T ss_pred CCCCCEEEEehh-----h-hcCCcCcccCCEEEEECC
Confidence 3 44 566662 1 123456777777765443
No 335
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=39.28 E-value=19 Score=38.26 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=18.3
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003881 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ~i~~il~grdv--ll~a~TGsGKTla 278 (789)
.+..++.|.|+ +..++||||||..
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyT 111 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYS 111 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeE
Confidence 45566788874 5568999999976
No 336
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=38.73 E-value=37 Score=39.04 Aligned_cols=68 Identities=16% Similarity=0.159 Sum_probs=46.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhc-CCcEEEeChHHHHHHHhhcccccCceeEE
Q 003881 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYL 376 (789)
Q Consensus 298 gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i~~l 376 (789)
+.++||.|+|+.-|..+++.+.+. ++++..++|. .....+..+.. ...|||||. .+... +++. +.+|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~-~R~~~l~~F~~g~~~VLVaTd-----v~~rG-iDi~-v~~V 422 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRK-TFDTEYPKTKLTDWDFVVTTD-----ISEMG-ANFR-AGRV 422 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTT-THHHHTTHHHHSCCSEEEECG-----GGGTT-CCCC-CSEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChH-HHHHHHHhhcCCCcEEEEECc-----HHHcC-cccC-ceEE
Confidence 456999999999999888887765 7888888875 33333344443 578999994 44333 3453 6665
Q ss_pred E
Q 003881 377 V 377 (789)
Q Consensus 377 V 377 (789)
|
T Consensus 423 I 423 (618)
T 2whx_A 423 I 423 (618)
T ss_dssp E
T ss_pred E
Confidence 4
No 337
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=38.61 E-value=19 Score=38.50 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=18.6
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003881 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ~i~~il~grdv--ll~a~TGsGKTla 278 (789)
.+..++.|.|+ +..++||||||..
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceE
Confidence 46667888875 4568999999976
No 338
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=38.39 E-value=20 Score=39.06 Aligned_cols=24 Identities=33% Similarity=0.518 Sum_probs=18.3
Q ss_pred HHHHHHcCCC--EEEEccCCChhhHH
Q 003881 255 ALPIILSGRD--IIGIAKTGSGKTAA 278 (789)
Q Consensus 255 ~i~~il~grd--vll~a~TGsGKTla 278 (789)
.+..++.|.| ++..++||||||.+
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyT 171 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHT 171 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeE
Confidence 4566778876 45568999999976
No 339
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=38.24 E-value=14 Score=36.00 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=14.8
Q ss_pred cCCCEEEEccCCChhhHH
Q 003881 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla 278 (789)
.++-++++++||+|||..
T Consensus 33 ~g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSET 50 (205)
T ss_dssp TTEEEEEECCCTTTTHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 346689999999999964
No 340
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=38.16 E-value=19 Score=38.26 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=18.4
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003881 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ~i~~il~grdv--ll~a~TGsGKTla 278 (789)
.+..++.|.|+ +..++||||||..
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyT 94 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYT 94 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeE
Confidence 45667788774 5568999999976
No 341
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=38.12 E-value=22 Score=37.52 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=19.1
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003881 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ~i~~il~grdv--ll~a~TGsGKTla 278 (789)
.+..++.|.|+ +..++||||||..
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyT 97 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYT 97 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEE
Confidence 56777889874 5568999999976
No 342
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=38.06 E-value=20 Score=38.49 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=18.3
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003881 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ~i~~il~grdv--ll~a~TGsGKTla 278 (789)
.+..++.|.|+ +..++||||||..
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyT 106 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYT 106 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceE
Confidence 45667888874 5568999999965
No 343
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=37.97 E-value=31 Score=37.91 Aligned_cols=16 Identities=38% Similarity=0.557 Sum_probs=14.5
Q ss_pred CCEEEEccCCChhhHH
Q 003881 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll~a~TGsGKTla 278 (789)
+++|+.+|+|+|||..
T Consensus 64 ~~iLl~GppGtGKT~l 79 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTAL 79 (456)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CeEEEECCCcCCHHHH
Confidence 6899999999999975
No 344
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=37.85 E-value=20 Score=33.11 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=17.8
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHH
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l 287 (789)
++.++++++.|||||.. +-+|...
T Consensus 4 ~~~i~l~G~~GsGKSTl--~~~La~~ 27 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTI--GRQLAQQ 27 (173)
T ss_dssp CCCEEEECCTTSCHHHH--HHHHHHH
T ss_pred CCeEEEECCCCCCHHHH--HHHHHHH
Confidence 46789999999999974 4444443
No 345
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=37.71 E-value=22 Score=37.78 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=18.2
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003881 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ~i~~il~grdv--ll~a~TGsGKTla 278 (789)
.+..++.|.|+ +..++||||||..
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyT 106 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWT 106 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEE
Confidence 45567788774 5568999999976
No 346
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=37.56 E-value=20 Score=38.24 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=18.7
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003881 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ~i~~il~grdv--ll~a~TGsGKTla 278 (789)
.+..++.|.|+ +..++||||||..
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyT 109 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYT 109 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceE
Confidence 45667788874 5568999999976
No 347
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=37.56 E-value=22 Score=38.01 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=18.4
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003881 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ~i~~il~grdv--ll~a~TGsGKTla 278 (789)
.+..++.|.|+ +..++||||||..
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyT 101 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHT 101 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceE
Confidence 45567788874 5568999999976
No 348
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=37.54 E-value=16 Score=36.67 Aligned_cols=15 Identities=33% Similarity=0.120 Sum_probs=12.8
Q ss_pred CEEEEccCCChhhHH
Q 003881 264 DIIGIAKTGSGKTAA 278 (789)
Q Consensus 264 dvll~a~TGsGKTla 278 (789)
-+++++++|||||..
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 368899999999975
No 349
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=37.42 E-value=18 Score=35.09 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=15.0
Q ss_pred cCCCEEEEccCCChhhHH
Q 003881 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla 278 (789)
.|+-+++++|+|+|||..
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 456688899999999975
No 350
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=37.39 E-value=23 Score=37.64 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=18.4
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003881 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ~i~~il~grdv--ll~a~TGsGKTla 278 (789)
.+..++.|.|+ +..++||||||..
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyT 100 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYT 100 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEe
Confidence 45667788874 5568999999976
No 351
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=37.37 E-value=23 Score=36.96 Aligned_cols=14 Identities=29% Similarity=0.299 Sum_probs=12.4
Q ss_pred EEEEccCCChhhHH
Q 003881 265 IIGIAKTGSGKTAA 278 (789)
Q Consensus 265 vll~a~TGsGKTla 278 (789)
+++.++.|+|||..
T Consensus 7 ~~i~G~~GaGKTTl 20 (318)
T 1nij_A 7 TLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEESSSSSCHHH
T ss_pred EEEEecCCCCHHHH
Confidence 67899999999974
No 352
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=37.28 E-value=22 Score=38.10 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=18.3
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003881 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ~i~~il~grdv--ll~a~TGsGKTla 278 (789)
.+..++.|.|+ +..++||||||..
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEe
Confidence 45567788874 4568999999976
No 353
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=37.15 E-value=16 Score=34.85 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=15.9
Q ss_pred HcCCCEEEEccCCChhhHH
Q 003881 260 LSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 260 l~grdvll~a~TGsGKTla 278 (789)
..|.-+++++++|||||..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp CCCCEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3567788999999999975
No 354
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=37.07 E-value=19 Score=38.67 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=18.1
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003881 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ~i~~il~grdv--ll~a~TGsGKTla 278 (789)
.+..++.|.|+ +..++||||||..
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCccee
Confidence 45567788774 5568999999976
No 355
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=36.92 E-value=18 Score=38.57 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=18.4
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003881 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ~i~~il~grdv--ll~a~TGsGKTla 278 (789)
.+..++.|.|+ +..++||||||..
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyT 105 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFT 105 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceE
Confidence 45667788774 5568999999976
No 356
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=36.79 E-value=17 Score=38.04 Aligned_cols=15 Identities=47% Similarity=0.476 Sum_probs=12.8
Q ss_pred CEEEEccCCChhhHH
Q 003881 264 DIIGIAKTGSGKTAA 278 (789)
Q Consensus 264 dvll~a~TGsGKTla 278 (789)
-+++++|||+|||..
T Consensus 12 ~i~i~GptgsGKt~l 26 (316)
T 3foz_A 12 AIFLMGPTASGKTAL 26 (316)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 367899999999975
No 357
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=36.73 E-value=18 Score=38.07 Aligned_cols=20 Identities=45% Similarity=0.611 Sum_probs=17.2
Q ss_pred HHcCCCEEEEccCCChhhHH
Q 003881 259 ILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 259 il~grdvll~a~TGsGKTla 278 (789)
+..|..++++++||||||..
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 34788999999999999973
No 358
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=36.72 E-value=21 Score=32.56 Aligned_cols=37 Identities=16% Similarity=0.346 Sum_probs=32.1
Q ss_pred CCCCEEEEeccc--ccHHHHHHHHHHcCCceeeccCCCC
Q 003881 469 DDGDVLVFASKK--TTVDEIESQLAQKGFKAAALHGDKD 505 (789)
Q Consensus 469 ~~~kvLVF~~s~--~~a~~l~~~L~~~g~~v~~lhg~~~ 505 (789)
...++||||.+- ..+..++..|...|+++..|.|++.
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 456899999987 6889999999999999999999864
No 359
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=36.71 E-value=19 Score=38.34 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=18.0
Q ss_pred HHHHHHcCCC--EEEEccCCChhhHH
Q 003881 255 ALPIILSGRD--IIGIAKTGSGKTAA 278 (789)
Q Consensus 255 ~i~~il~grd--vll~a~TGsGKTla 278 (789)
.+..++.|.| ++..++||||||..
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyT 97 (355)
T 1goj_A 72 TVDDILNGYNGTVFAYGQTGAGKSYT 97 (355)
T ss_dssp HHHHHTTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCCcceEEEECCCCCCcceE
Confidence 3555678877 45568999999976
No 360
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A {Vibrio fischeri} PDB: 3pvz_A*
Probab=36.68 E-value=2.3e+02 Score=30.13 Aligned_cols=90 Identities=10% Similarity=0.095 Sum_probs=55.6
Q ss_pred HHHHHHHHcCCCEEEEccCCC-hhhHHHHHHHHHHHhcCccccccCCC-eEEEEcCcHHHHHHHHHHHHHHhhhcCCeEE
Q 003881 253 CQALPIILSGRDIIGIAKTGS-GKTAAFVLPMIVHIMDQPELQKEEGP-IGVICAPTRELAHQIYLETKKFAKSHGIRVS 330 (789)
Q Consensus 253 ~~~i~~il~grdvll~a~TGs-GKTla~llpil~~l~~~~~~~~~~gp-~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~ 330 (789)
...+...+.++.+|+.+.||. |..++ ..++. .++ .++++.-...-..++..++.......+..+.
T Consensus 26 ~~~~~~~~~~k~vLVTGatG~IG~~l~------~~L~~-------~g~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~v~ 92 (399)
T 3nzo_A 26 EKELQSVVSQSRFLVLGGAGSIGQAVT------KEIFK-------RNPQKLHVVDISENNMVELVRDIRSSFGYINGDFQ 92 (399)
T ss_dssp HHHHHHHHHTCEEEEETTTSHHHHHHH------HHHHT-------TCCSEEEEECSCHHHHHHHHHHHHHHTCCCSSEEE
T ss_pred HHHHHHHhCCCEEEEEcCChHHHHHHH------HHHHH-------CCCCEEEEEECCcchHHHHHHHHHHhcCCCCCcEE
Confidence 345566778999999999986 76654 33332 243 5666666555555565566554332345777
Q ss_pred EEECCCChHHHHHHHh--cCCcEEEeC
Q 003881 331 AVYGGMSKLDQFKELK--AGCEIVIAT 355 (789)
Q Consensus 331 ~~~gg~~~~~~~~~l~--~~~dIiV~T 355 (789)
.+.+..........+. .++|+||-.
T Consensus 93 ~~~~Dl~d~~~~~~~~~~~~~D~Vih~ 119 (399)
T 3nzo_A 93 TFALDIGSIEYDAFIKADGQYDYVLNL 119 (399)
T ss_dssp EECCCTTSHHHHHHHHHCCCCSEEEEC
T ss_pred EEEEeCCCHHHHHHHHHhCCCCEEEEC
Confidence 7778777665555443 467887754
No 361
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=36.62 E-value=15 Score=35.30 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=16.7
Q ss_pred HHcCCCEEEEccCCChhhHH
Q 003881 259 ILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 259 il~grdvll~a~TGsGKTla 278 (789)
+..++-+++++++|+|||..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTL 28 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHH
T ss_pred cccCCEEEEECCCCCCHHHH
Confidence 34667899999999999975
No 362
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=36.47 E-value=74 Score=36.99 Aligned_cols=76 Identities=17% Similarity=0.191 Sum_probs=51.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHhhh--------------------------------cCCeEEEEECCCChHHHHHHH
Q 003881 298 GPIGVICAPTRELAHQIYLETKKFAKS--------------------------------HGIRVSAVYGGMSKLDQFKEL 345 (789)
Q Consensus 298 gp~vLIl~PtreLa~Qi~~~~~~~~~~--------------------------------~~i~v~~~~gg~~~~~~~~~l 345 (789)
+..+||.||++.-+..++..+.+.... ....+..++++.+..++....
T Consensus 252 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~ 331 (715)
T 2va8_A 252 NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIE 331 (715)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHH
Confidence 456899999999999988888764321 123578899998876553322
Q ss_pred ---h-cCCcEEEeChHHHHHHHhhcccccCceeEEEEe
Q 003881 346 ---K-AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLD 379 (789)
Q Consensus 346 ---~-~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvD 379 (789)
. ....|||||. .+. ..+++..+.+||.+
T Consensus 332 ~~f~~g~~~vlvaT~-----~l~-~Gidip~~~~VI~~ 363 (715)
T 2va8_A 332 EGFRQRKIKVIVATP-----TLA-AGVNLPARTVIIGD 363 (715)
T ss_dssp HHHHTTCSCEEEECG-----GGG-GSSCCCBSEEEECC
T ss_pred HHHHcCCCeEEEECh-----HHh-cccCCCceEEEEeC
Confidence 2 2479999993 332 34567778776643
No 363
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=36.41 E-value=26 Score=31.50 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=32.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHHcCC-ceeeccCCCC
Q 003881 469 DDGDVLVFASKKTTVDEIESQLAQKGF-KAAALHGDKD 505 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~-~v~~lhg~~~ 505 (789)
...+++|||.+-..+...+..|...|+ .+..|.|++.
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 456899999999999999999999999 5889999864
No 364
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=36.37 E-value=40 Score=33.37 Aligned_cols=64 Identities=13% Similarity=0.229 Sum_probs=46.6
Q ss_pred ecCCCcccHHHHHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcCCc-eeeccCCCCHHHHHHHHHHhhcCCcceEEee
Q 003881 449 VIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKDQASRMEILQKFKSGVYHVLIAT 527 (789)
Q Consensus 449 ~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~-v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT 527 (789)
..+....|-...+..+... ..++||+|+++.-+..+.+.+.+.++. +..++|+.. ....|+|+|
T Consensus 114 ~~~tG~GKT~~a~~~~~~~--~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v~T 178 (237)
T 2fz4_A 114 VLPTGSGKTHVAMAAINEL--STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTVST 178 (237)
T ss_dssp EESSSTTHHHHHHHHHHHS--CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEEEE
T ss_pred EeCCCCCHHHHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEEEe
Confidence 3345556655444433332 568999999999999999988887888 888988764 256899998
No 365
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=36.30 E-value=53 Score=28.12 Aligned_cols=52 Identities=10% Similarity=0.125 Sum_probs=36.0
Q ss_pred hcCCCCCCCCEEEEecc------cccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHH
Q 003881 463 KLPGMIDDGDVLVFASK------KTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQ 514 (789)
Q Consensus 463 ~L~~~~~~~kvLVF~~s------~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~ 514 (789)
.+.......+|+||..+ --.|..+..+|.+.++.+..++=......+....+
T Consensus 10 ~v~~~i~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~ 67 (109)
T 3ipz_A 10 TLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKE 67 (109)
T ss_dssp HHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH
T ss_pred HHHHHHccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHH
Confidence 33334456799999874 77899999999999988776654444444444433
No 366
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=36.04 E-value=20 Score=35.91 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=14.6
Q ss_pred CCCEEEEccCCChhhHH
Q 003881 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvll~a~TGsGKTla 278 (789)
.+.+++.+++|+|||..
T Consensus 44 ~~~vll~G~~GtGKT~l 60 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLL 60 (268)
T ss_dssp CSCCCCBCSSCSSHHHH
T ss_pred CceEEEECCCCCcHHHH
Confidence 35799999999999965
No 367
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=35.91 E-value=16 Score=38.35 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=13.3
Q ss_pred CCEEEEccCCChhhHH
Q 003881 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll~a~TGsGKTla 278 (789)
+-+++++|||+|||..
T Consensus 4 ~~i~i~GptgsGKt~l 19 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKT 19 (322)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEECCCcCCHHHH
Confidence 3467899999999975
No 368
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=35.77 E-value=56 Score=40.68 Aligned_cols=59 Identities=10% Similarity=0.006 Sum_probs=39.9
Q ss_pred CEEEEccCCChhhHHHHHHHHHHHhcCcc----ccccCCCeEEEEcCcHHHHHHHHHHHHHHh
Q 003881 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPE----LQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (789)
Q Consensus 264 dvll~a~TGsGKTla~llpil~~l~~~~~----~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~ 322 (789)
..+|.|.-|||||.+-..-++..++.... ...-.-..+|+|+=|+..|.++.+.+.+.+
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 45999999999998755555555543210 000112358999999999998888777643
No 369
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=35.75 E-value=51 Score=28.46 Aligned_cols=48 Identities=8% Similarity=0.144 Sum_probs=34.3
Q ss_pred CCCCCCEEEEe------cccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHH
Q 003881 467 MIDDGDVLVFA------SKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQ 514 (789)
Q Consensus 467 ~~~~~kvLVF~------~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~ 514 (789)
.+...+|+||. +.--.|..+..+|...++.+..++=..+...+....+
T Consensus 12 ~i~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~ 65 (111)
T 3zyw_A 12 LTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKA 65 (111)
T ss_dssp HHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH
T ss_pred HHhcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHH
Confidence 34567999999 4567799999999999988776654445555444433
No 370
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=35.73 E-value=23 Score=37.81 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=18.3
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003881 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ~i~~il~grdv--ll~a~TGsGKTla 278 (789)
.+..++.|.|+ +..++||||||..
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyT 122 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHT 122 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceee
Confidence 45667788874 5568999999976
No 371
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=35.44 E-value=30 Score=34.37 Aligned_cols=17 Identities=35% Similarity=0.380 Sum_probs=14.1
Q ss_pred CEEEEccCCChhhHHHH
Q 003881 264 DIIGIAKTGSGKTAAFV 280 (789)
Q Consensus 264 dvll~a~TGsGKTla~l 280 (789)
++++.++.|+|||..++
T Consensus 8 ~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAML 24 (228)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 58889999999997633
No 372
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=35.43 E-value=66 Score=38.59 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=43.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHH----cCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeeh
Q 003881 469 DDGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD 528 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~----~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~ 528 (789)
.+.+++|.+++..-|.+.++.+.. .++.+.++.|+++..+|..+. .++|+|+|.
T Consensus 119 ~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 119 TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 345899999999888777776654 589999999999987766654 379999994
No 373
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=35.22 E-value=30 Score=36.84 Aligned_cols=38 Identities=24% Similarity=0.240 Sum_probs=24.9
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcC
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP 306 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~P 306 (789)
.++-+++.++.|+|||.. ++.++..+... +..++++..
T Consensus 62 ~G~ii~I~G~pGsGKTtL-al~la~~~~~~-------g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTL-TLQVIAAAQRE-------GKTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHH-HHHHHHHHHHT-------TCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHH-HHHHHHHHHHC-------CCeEEEEeC
Confidence 346789999999999975 44455444332 334676654
No 374
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=35.17 E-value=18 Score=38.75 Aligned_cols=19 Identities=32% Similarity=0.282 Sum_probs=15.7
Q ss_pred HcCCCEEEEccCCChhhHH
Q 003881 260 LSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 260 l~grdvll~a~TGsGKTla 278 (789)
..+..++++++||||||..
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3566789999999999974
No 375
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=35.14 E-value=14 Score=37.63 Aligned_cols=59 Identities=14% Similarity=0.127 Sum_probs=31.5
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHH-HHHHHHHH--cCCCEEEEccCCChhhHHHHHHHHHHH
Q 003881 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQ-CQALPIIL--SGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 223 pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ-~~~i~~il--~grdvll~a~TGsGKTla~llpil~~l 287 (789)
|-.+|+++...+.+...+...-. .+. ...+..+- -.+.+++++++|+|||.. +-++...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~----~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl--~~~i~~~ 96 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVE----FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHL--ARAVAGE 96 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHH----HHHCHHHHHHTTCCCCCEEEEECCTTSSHHHH--HHHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHH----HHHCHHHHHHcCCCCCCeEEEECCCcChHHHH--HHHHHHH
Confidence 44668887666666555543210 000 01111110 124599999999999964 3444444
No 376
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=35.11 E-value=36 Score=46.58 Aligned_cols=55 Identities=11% Similarity=0.247 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHH-HH---HHHHcCCCEEEEccCCChhhHHHHHHHHHHHhc
Q 003881 232 FSTQLMHAISKQGYEKPTSIQCQ-AL---PIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMD 289 (789)
Q Consensus 232 l~~~l~~~l~~~g~~~ptpiQ~~-~i---~~il~grdvll~a~TGsGKTla~llpil~~l~~ 289 (789)
|...+.+.+.+.++. |++.+.. ++ ..+...+.++++||||+|||.+ +-+|...+.
T Consensus 873 l~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~--~~~L~~al~ 931 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTS--WEVYLEAIE 931 (3245)
T ss_dssp HHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHH--HHHHHHHHT
T ss_pred HHHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHH--HHHHHHHHH
Confidence 345566667777774 5554433 33 2334556789999999999987 444555443
No 377
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=35.09 E-value=20 Score=33.77 Aligned_cols=18 Identities=33% Similarity=0.551 Sum_probs=15.4
Q ss_pred cCCCEEEEccCCChhhHH
Q 003881 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla 278 (789)
.+..+++++++|||||.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 9 KGINILITGTPGTGKTSM 26 (184)
T ss_dssp SSCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 356799999999999975
No 378
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=35.08 E-value=24 Score=35.52 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=19.9
Q ss_pred HHcCCCEEEEccCCChhhHHHHHHHHHH
Q 003881 259 ILSGRDIIGIAKTGSGKTAAFVLPMIVH 286 (789)
Q Consensus 259 il~grdvll~a~TGsGKTla~llpil~~ 286 (789)
.+.++.+++++++|+|||.+ .-+|..
T Consensus 45 ~l~g~~i~l~G~~GsGKSTl--~~~La~ 70 (250)
T 3nwj_A 45 YLNGRSMYLVGMMGSGKTTV--GKIMAR 70 (250)
T ss_dssp HHTTCCEEEECSTTSCHHHH--HHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHH--HHHHHH
Confidence 34589999999999999975 334444
No 379
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=34.90 E-value=19 Score=38.40 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=18.8
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003881 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ~i~~il~grdv--ll~a~TGsGKTla 278 (789)
.+..++.|.|+ +..++||||||..
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyT 102 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYT 102 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceE
Confidence 56677888874 5568999999976
No 380
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=34.83 E-value=22 Score=30.35 Aligned_cols=37 Identities=19% Similarity=0.399 Sum_probs=31.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHHcCCc-eeeccCCCC
Q 003881 469 DDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKD 505 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~-v~~lhg~~~ 505 (789)
...+++|||.+-..+...+..|...|+. +..|.|++.
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 3568999999988899999999999995 888988764
No 381
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=34.71 E-value=26 Score=38.15 Aligned_cols=25 Identities=36% Similarity=0.519 Sum_probs=19.8
Q ss_pred HHHHHHHcCCCE--EEEccCCChhhHH
Q 003881 254 QALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 254 ~~i~~il~grdv--ll~a~TGsGKTla 278 (789)
..+..++.|.|+ +..++||||||..
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyT 155 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYT 155 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeE
Confidence 357778899875 5568999999976
No 382
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=34.60 E-value=24 Score=38.10 Aligned_cols=24 Identities=33% Similarity=0.518 Sum_probs=18.5
Q ss_pred HHHHHHcCCC--EEEEccCCChhhHH
Q 003881 255 ALPIILSGRD--IIGIAKTGSGKTAA 278 (789)
Q Consensus 255 ~i~~il~grd--vll~a~TGsGKTla 278 (789)
.+..++.|.+ ++..++||||||..
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyT 151 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHT 151 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeE
Confidence 4566778876 45568999999976
No 383
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=34.58 E-value=19 Score=38.34 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=18.4
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003881 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ~i~~il~grdv--ll~a~TGsGKTla 278 (789)
.+..++.|.|+ +..++||||||..
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyT 101 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFT 101 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEe
Confidence 45666788874 5568999999976
No 384
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=34.56 E-value=24 Score=38.89 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=18.3
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003881 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ~i~~il~grdv--ll~a~TGsGKTla 278 (789)
.+..++.|.|+ +..++||||||..
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyT 153 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYT 153 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEE
Confidence 45567788874 5568999999976
No 385
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=34.46 E-value=62 Score=27.24 Aligned_cols=56 Identities=18% Similarity=0.182 Sum_probs=37.6
Q ss_pred CCCCEEEEec------ccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcceE
Q 003881 469 DDGDVLVFAS------KKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVL 524 (789)
Q Consensus 469 ~~~kvLVF~~------s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VL 524 (789)
...+++||.. .--.|..+..+|.+.++.+..+.=+.....+......+....++.|
T Consensus 15 ~~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v 76 (105)
T 2yan_A 15 NKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQL 76 (105)
T ss_dssp TSSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEE
T ss_pred ccCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeE
Confidence 3457999984 5568999999999998887777655565555555444433334443
No 386
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=34.44 E-value=19 Score=34.34 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=18.2
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHH
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l 287 (789)
.|.-+.+++++|+|||.. +-+|..+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl--~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL--VRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHH--HHHHHHH
T ss_pred CCcEEEEECcCCCCHHHH--HHHHHhh
Confidence 566788899999999974 4444443
No 387
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=34.42 E-value=47 Score=39.67 Aligned_cols=69 Identities=7% Similarity=0.044 Sum_probs=51.7
Q ss_pred CCCEEEEecccccHHHHHHHHHH----cCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeeh-hh-----hc-------
Q 003881 470 DGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA-----AR------- 532 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~----~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~-----~r------- 532 (789)
+.+++|.+++..-|.+.++.+.. .|+.+.++.|+++..+|.... .++|+++|. .+ ..
T Consensus 152 g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m~~~~~ 225 (922)
T 1nkt_A 152 GNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNMAHSLD 225 (922)
T ss_dssp TSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSGG
T ss_pred CCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhhhccHh
Confidence 45899999999988777777654 589999999999987766544 278999994 22 12
Q ss_pred cCCCCCccEEEE
Q 003881 533 GLDIKSIKSVVN 544 (789)
Q Consensus 533 GlDI~~v~~VI~ 544 (789)
.+.+..++++|.
T Consensus 226 ~l~lr~l~~lIV 237 (922)
T 1nkt_A 226 DLVQRGHHYAIV 237 (922)
T ss_dssp GCCCCCCCEEEE
T ss_pred hhccCCCCEEEE
Confidence 366677777774
No 388
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=34.37 E-value=15 Score=34.37 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=15.1
Q ss_pred cCCCEEEEccCCChhhHH
Q 003881 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla 278 (789)
.+..+++++++|||||.+
T Consensus 3 ~g~~I~l~G~~GsGKST~ 20 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQ 20 (186)
T ss_dssp CEEEEEEECCTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345688999999999975
No 389
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=34.03 E-value=18 Score=34.06 Aligned_cols=18 Identities=28% Similarity=0.446 Sum_probs=15.3
Q ss_pred cCCCEEEEccCCChhhHH
Q 003881 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla 278 (789)
.|.-+++++++|+|||..
T Consensus 8 ~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp TTEEEEEEECTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456788999999999974
No 390
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=33.86 E-value=22 Score=38.10 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=18.8
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003881 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ~i~~il~grdv--ll~a~TGsGKTla 278 (789)
.+..++.|.|+ +..++||||||..
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyT 96 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFT 96 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEe
Confidence 56677888874 4568999999976
No 391
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=33.79 E-value=84 Score=35.49 Aligned_cols=80 Identities=13% Similarity=0.138 Sum_probs=51.5
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHHhhh----cCCeEEEEECCCCh--HHHHHHHhcC-Cc---EEEeChHHHHHHHhhc
Q 003881 297 EGPIGVICAPTRELAHQIYLETKKFAKS----HGIRVSAVYGGMSK--LDQFKELKAG-CE---IVIATPGRLIDMLKMK 366 (789)
Q Consensus 297 ~gp~vLIl~PtreLa~Qi~~~~~~~~~~----~~i~v~~~~gg~~~--~~~~~~l~~~-~d---IiV~Tp~~L~~~l~~~ 366 (789)
.+.++||.|+++.-|..+++.+.+.... .+-.+..++|.... ...+..+..+ .+ |+||| +++ ..
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt-----~~l-~~ 511 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTS-----QLL-TT 511 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEES-----STT-TT
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEEC-----Chh-hc
Confidence 3578999999999999999998876432 12235566666543 2223344432 23 77777 233 23
Q ss_pred ccccCceeEEEEeccc
Q 003881 367 ALTMSRVTYLVLDEAD 382 (789)
Q Consensus 367 ~~~l~~i~~lVvDEah 382 (789)
-+++..+.+||++..-
T Consensus 512 GiDip~v~~Vi~~~~~ 527 (590)
T 3h1t_A 512 GVDAPTCKNVVLARVV 527 (590)
T ss_dssp TCCCTTEEEEEEESCC
T ss_pred CccchheeEEEEEecC
Confidence 4578889999986654
No 392
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=33.66 E-value=30 Score=33.52 Aligned_cols=17 Identities=35% Similarity=0.354 Sum_probs=13.9
Q ss_pred CEEEEccCCChhhHHHH
Q 003881 264 DIIGIAKTGSGKTAAFV 280 (789)
Q Consensus 264 dvll~a~TGsGKTla~l 280 (789)
-.+++++.|||||+.++
T Consensus 7 i~l~tG~pGsGKT~~a~ 23 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMV 23 (199)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 46889999999998643
No 393
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=33.17 E-value=21 Score=34.70 Aligned_cols=19 Identities=16% Similarity=0.394 Sum_probs=16.0
Q ss_pred HcCCCEEEEccCCChhhHH
Q 003881 260 LSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 260 l~grdvll~a~TGsGKTla 278 (789)
+.++-+++++|+|+|||..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp CSCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECcCCCCHHHH
Confidence 3567789999999999974
No 394
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=33.17 E-value=18 Score=33.24 Aligned_cols=15 Identities=20% Similarity=-0.106 Sum_probs=13.1
Q ss_pred CEEEEccCCChhhHH
Q 003881 264 DIIGIAKTGSGKTAA 278 (789)
Q Consensus 264 dvll~a~TGsGKTla 278 (789)
-++++++.|+|||.+
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999975
No 395
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=33.15 E-value=18 Score=33.50 Aligned_cols=15 Identities=40% Similarity=0.463 Sum_probs=13.0
Q ss_pred CEEEEccCCChhhHH
Q 003881 264 DIIGIAKTGSGKTAA 278 (789)
Q Consensus 264 dvll~a~TGsGKTla 278 (789)
-++++++.|||||..
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 478899999999975
No 396
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=33.05 E-value=1.5e+02 Score=32.04 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=22.5
Q ss_pred cHHHHHHHHHHH---cCCCEEEEccCCChhhHH
Q 003881 249 TSIQCQALPIIL---SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 249 tpiQ~~~i~~il---~grdvll~a~TGsGKTla 278 (789)
...=..+|..++ .|+.+++.+++|+|||..
T Consensus 158 ~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtL 190 (422)
T 3ice_A 158 EDLTARVLDLASPIGRGQRGLIVAPPKAGKTML 190 (422)
T ss_dssp THHHHHHHHHHSCCBTTCEEEEECCSSSSHHHH
T ss_pred ccccceeeeeeeeecCCcEEEEecCCCCChhHH
Confidence 344445566554 688999999999999975
No 397
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=32.72 E-value=2.4e+02 Score=29.37 Aligned_cols=15 Identities=27% Similarity=0.268 Sum_probs=13.1
Q ss_pred CEEEEccCCChhhHH
Q 003881 264 DIIGIAKTGSGKTAA 278 (789)
Q Consensus 264 dvll~a~TGsGKTla 278 (789)
.+++++..|+|||..
T Consensus 81 ~I~i~G~~G~GKSTl 95 (355)
T 3p32_A 81 RVGITGVPGVGKSTA 95 (355)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999975
No 398
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=32.56 E-value=22 Score=37.43 Aligned_cols=15 Identities=33% Similarity=0.392 Sum_probs=13.3
Q ss_pred CEEEEccCCChhhHH
Q 003881 264 DIIGIAKTGSGKTAA 278 (789)
Q Consensus 264 dvll~a~TGsGKTla 278 (789)
.++++++||+|||..
T Consensus 7 ~i~i~GptGsGKTtl 21 (323)
T 3crm_A 7 AIFLMGPTAAGKTDL 21 (323)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999975
No 399
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=32.50 E-value=72 Score=38.77 Aligned_cols=77 Identities=12% Similarity=0.151 Sum_probs=55.3
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHH---HHHHhcC---CcEEEeChHHHHHHHhhccccc
Q 003881 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ---FKELKAG---CEIVIATPGRLIDMLKMKALTM 370 (789)
Q Consensus 297 ~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~---~~~l~~~---~dIiV~Tp~~L~~~l~~~~~~l 370 (789)
.+.++||.|+++..+..+...+... .++++..++|+.+..+. +..+..+ ++|+|||. .+ ...+++
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~---~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~-----v~-~~GlDl 572 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLRER---EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE-----IG-SEGRNF 572 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTT---TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC-----CT-TCSSCC
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecc-----hh-hcCCCc
Confidence 3567899999999888777666642 38899999999875433 3344444 89999992 22 345678
Q ss_pred CceeEEEEeccc
Q 003881 371 SRVTYLVLDEAD 382 (789)
Q Consensus 371 ~~i~~lVvDEah 382 (789)
..+++||+-+.+
T Consensus 573 ~~~~~VI~~d~p 584 (968)
T 3dmq_A 573 QFASHMVMFDLP 584 (968)
T ss_dssp TTCCEEECSSCC
T ss_pred ccCcEEEEecCC
Confidence 889999876665
No 400
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=32.40 E-value=26 Score=32.68 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=16.8
Q ss_pred CEEEEccCCChhhHHHHHHHHHHHh
Q 003881 264 DIIGIAKTGSGKTAAFVLPMIVHIM 288 (789)
Q Consensus 264 dvll~a~TGsGKTla~llpil~~l~ 288 (789)
-.++++++|+|||.. +-++..++
T Consensus 28 ~~~i~G~NGsGKStl--l~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNI--GDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHH--HHHHHHHT
T ss_pred cEEEECCCCCCHHHH--HHHHHHHH
Confidence 467899999999964 44555554
No 401
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=32.38 E-value=20 Score=38.71 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=17.5
Q ss_pred HHHHHcCCCE--EEEccCCChhhHH
Q 003881 256 LPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 256 i~~il~grdv--ll~a~TGsGKTla 278 (789)
+..++.|.|+ +..++||||||..
T Consensus 91 v~~~l~G~N~tifAYGqTGSGKTyT 115 (388)
T 3bfn_A 91 LRHLLEGQNASVLAYGPTGAGKTHT 115 (388)
T ss_dssp HHHHTTTCCEEEEEESCTTSSHHHH
T ss_pred HHHhhcCceeeEeeecCCCCCCCeE
Confidence 4556788774 4568999999976
No 402
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=32.27 E-value=27 Score=34.10 Aligned_cols=26 Identities=12% Similarity=0.133 Sum_probs=18.7
Q ss_pred HcCCCEEEEccCCChhhHHHHHHHHHHH
Q 003881 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 260 l~grdvll~a~TGsGKTla~llpil~~l 287 (789)
..|+-+.+++|+|+|||.. +-+|..+
T Consensus 21 ~~G~~~~lvGpsGsGKSTL--l~~L~g~ 46 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTL--IKKLLNE 46 (218)
T ss_dssp -CCCCEEEECSTTSSHHHH--HHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHH--HHHHHhh
Confidence 4678899999999999974 3344433
No 403
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=32.22 E-value=18 Score=22.28 Aligned_cols=12 Identities=58% Similarity=1.212 Sum_probs=8.1
Q ss_pred CccccCCCCCCC
Q 003881 777 RPRERRRPSGWD 788 (789)
Q Consensus 777 ~~~~~~~~~~~~ 788 (789)
|.|.|+||--||
T Consensus 4 rrrprkrplewd 15 (28)
T 3ukw_C 4 RRRPRKRPLEWD 15 (28)
T ss_dssp ---CCCCCCCCC
T ss_pred ccccccCCcccc
Confidence 567789999998
No 404
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=32.16 E-value=45 Score=37.33 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=19.1
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHH
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l 287 (789)
.+.++++++.||||||.+ +-.++..+
T Consensus 166 ~~pHlLIaG~TGSGKSt~-L~~li~sL 191 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVG-VNAMILSM 191 (512)
T ss_dssp GSCSEEEECCTTSSHHHH-HHHHHHHH
T ss_pred cCceEEEECCCCCCHHHH-HHHHHHHH
Confidence 457899999999999975 44444333
No 405
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=31.95 E-value=38 Score=35.15 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=18.6
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhc
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMD 289 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l~~ 289 (789)
+.-+.+++++|+|||.. +..|..++.
T Consensus 102 g~vi~lvG~nGsGKTTl--l~~Lagll~ 127 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTT--IAKLGRYYQ 127 (304)
T ss_dssp SSEEEEECSTTSSHHHH--HHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHH--HHHHHHHHH
Confidence 45678899999999964 445555543
No 406
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=31.81 E-value=29 Score=31.74 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=16.1
Q ss_pred EEEEccCCChhhHHHHHHHHHHHh
Q 003881 265 IIGIAKTGSGKTAAFVLPMIVHIM 288 (789)
Q Consensus 265 vll~a~TGsGKTla~llpil~~l~ 288 (789)
.++++++|+|||.. +-++..++
T Consensus 26 ~~I~G~NGsGKSti--l~Ai~~~l 47 (149)
T 1f2t_A 26 NLIIGQNGSGKSSL--LDAILVGL 47 (149)
T ss_dssp EEEECCTTSSHHHH--HHHHHHHH
T ss_pred EEEECCCCCCHHHH--HHHHHHHH
Confidence 67889999999965 44455444
No 407
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=31.69 E-value=99 Score=35.98 Aligned_cols=77 Identities=19% Similarity=0.205 Sum_probs=50.8
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHhhh-----------------------------cCCeEEEEECCCChHHHHHH---H
Q 003881 298 GPIGVICAPTRELAHQIYLETKKFAKS-----------------------------HGIRVSAVYGGMSKLDQFKE---L 345 (789)
Q Consensus 298 gp~vLIl~PtreLa~Qi~~~~~~~~~~-----------------------------~~i~v~~~~gg~~~~~~~~~---l 345 (789)
+..+||.||++.-+..++..+.+.+.. ....+..++++.+..++... +
T Consensus 237 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 316 (720)
T 2zj8_A 237 KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENF 316 (720)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 456899999999999998888765321 12247888999887655332 2
Q ss_pred hc-CCcEEEeChHHHHHHHhhcccccCceeEEEEecc
Q 003881 346 KA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEA 381 (789)
Q Consensus 346 ~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEa 381 (789)
.. ...|||||. .+. ..+++..+.+ ||+..
T Consensus 317 ~~g~~~vlvaT~-----~l~-~Gvdip~~~~-VI~~~ 346 (720)
T 2zj8_A 317 RKGIIKAVVATP-----TLS-AGINTPAFRV-IIRDI 346 (720)
T ss_dssp HTTSSCEEEECS-----TTG-GGCCCCBSEE-EECCS
T ss_pred HCCCCeEEEECc-----Hhh-ccCCCCceEE-EEcCC
Confidence 22 479999993 222 3446767766 44433
No 408
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=31.62 E-value=28 Score=38.37 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=38.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhc-CCcEEEeC
Q 003881 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKA-GCEIVIAT 355 (789)
Q Consensus 298 gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~-~~dIiV~T 355 (789)
+.++||.||++.-|..+++.+++. ++.+..+++... ......+.. ...|||||
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~R-~~~~~~f~~g~~~iLVaT 243 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKSY-DTEYPKCKNGDWDFVITT 243 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTCC-CCCGGGSSSCCCSEEEES
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHHH-HHHHhhccCCCceEEEEC
Confidence 456899999999999888887765 788888887532 222222332 47899999
No 409
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=31.53 E-value=26 Score=37.28 Aligned_cols=17 Identities=47% Similarity=0.567 Sum_probs=15.0
Q ss_pred CCCEEEEccCCChhhHH
Q 003881 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvll~a~TGsGKTla 278 (789)
..++++++++|+|||..
T Consensus 72 ~~~ill~Gp~GtGKT~l 88 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLM 88 (376)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CCCEEEECCCCCCHHHH
Confidence 46899999999999965
No 410
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=31.08 E-value=28 Score=33.70 Aligned_cols=40 Identities=10% Similarity=0.198 Sum_probs=22.0
Q ss_pred eeEEEEeccchhccCC---Ch-HHHHHHHhhc-CCCceEEEEecc
Q 003881 373 VTYLVLDEADRMFDLG---FE-PQIRSIVGQI-RPDRQTLLFSAT 412 (789)
Q Consensus 373 i~~lVvDEah~m~~~~---f~-~~i~~il~~l-~~~~q~ll~SAT 412 (789)
-.+|||||||.++... .+ ..+...+... ....++|+++-.
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
Confidence 5689999999985321 11 1112222222 234577777776
No 411
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=30.97 E-value=23 Score=34.86 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=15.2
Q ss_pred cCCCEEEEccCCChhhHH
Q 003881 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla 278 (789)
....+++.+++|||||.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~ 32 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQ 32 (233)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345789999999999976
No 412
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=30.88 E-value=29 Score=32.75 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=16.6
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHH
Q 003881 263 RDIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 263 rdvll~a~TGsGKTla~llpil~~l 287 (789)
+-+.+++|+|+|||.. +-+|..+
T Consensus 2 ~ii~l~GpsGaGKsTl--~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL--LKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHH--HHHHHHH
T ss_pred CEEEEECCCCCCHHHH--HHHHHhh
Confidence 4578899999999974 4444444
No 413
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=30.85 E-value=62 Score=36.76 Aligned_cols=42 Identities=21% Similarity=0.411 Sum_probs=30.3
Q ss_pred cCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEec
Q 003881 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSA 411 (789)
Q Consensus 370 l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SA 411 (789)
+.+-.++|+||.-.-+|......+...+..+..++-+|+.|.
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH 537 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAH 537 (582)
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 456789999999988887777778887777765444444443
No 414
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=30.52 E-value=18 Score=33.94 Aligned_cols=17 Identities=18% Similarity=0.261 Sum_probs=14.2
Q ss_pred CCCEEEEccCCChhhHH
Q 003881 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvll~a~TGsGKTla 278 (789)
..-+++++.+|||||.+
T Consensus 3 ~~~I~l~G~~GsGKsT~ 19 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQ 19 (196)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 34578999999999976
No 415
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=30.49 E-value=27 Score=33.39 Aligned_cols=18 Identities=33% Similarity=0.575 Sum_probs=15.3
Q ss_pred cCCCEEEEccCCChhhHH
Q 003881 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla 278 (789)
.+.-++++++.|+|||..
T Consensus 28 ~g~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTI 45 (200)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456789999999999975
No 416
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=30.45 E-value=30 Score=27.99 Aligned_cols=36 Identities=14% Similarity=0.304 Sum_probs=28.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHHcCCc-eeeccCCCC
Q 003881 469 DDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKD 505 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~-v~~lhg~~~ 505 (789)
...+++|||.+-..+...+..|.+.|+. +..+ |++.
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 4568999999988899999999999985 5555 6643
No 417
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=30.41 E-value=23 Score=33.95 Aligned_cols=16 Identities=31% Similarity=0.522 Sum_probs=14.0
Q ss_pred CCEEEEccCCChhhHH
Q 003881 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll~a~TGsGKTla 278 (789)
|-++++||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999974
No 418
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=30.24 E-value=24 Score=37.99 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=18.4
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003881 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ~i~~il~grdv--ll~a~TGsGKTla 278 (789)
.+..++.|.|+ +..++||||||..
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyT 132 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFT 132 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceE
Confidence 46667788774 4568999999976
No 419
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=30.18 E-value=31 Score=36.86 Aligned_cols=18 Identities=39% Similarity=0.484 Sum_probs=14.6
Q ss_pred cCCC--EEEEccCCChhhHH
Q 003881 261 SGRD--IIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grd--vll~a~TGsGKTla 278 (789)
.|.+ ++..++||||||..
T Consensus 82 ~G~n~tifAYGqTGSGKTyT 101 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYT 101 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHH
T ss_pred CCceeEEEeeCCCCCCCCEE
Confidence 4777 46779999999976
No 420
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=29.92 E-value=28 Score=36.20 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=15.2
Q ss_pred cCCCEEEEccCCChhhHH
Q 003881 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla 278 (789)
...++|+.+++|+|||..
T Consensus 44 ~~~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTA 61 (350)
T ss_dssp GGCCEEEECCGGGCTTHH
T ss_pred CCceEEEECCCCccHHHH
Confidence 346799999999999964
No 421
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=29.89 E-value=29 Score=32.63 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=15.9
Q ss_pred HcCCCEEEEccCCChhhHH
Q 003881 260 LSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 260 l~grdvll~a~TGsGKTla 278 (789)
..+.-+++++++|||||.+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQ 25 (196)
T ss_dssp TTSCEEEEEECTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3556789999999999975
No 422
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=29.87 E-value=19 Score=33.64 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=14.6
Q ss_pred cCCCEEEEccCCChhhHH
Q 003881 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla 278 (789)
.|.-+.++++.|||||..
T Consensus 8 ~gei~~l~G~nGsGKSTl 25 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTF 25 (171)
T ss_dssp SSEEEEEECCTTSCHHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 345578899999999975
No 423
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=29.84 E-value=26 Score=37.12 Aligned_cols=15 Identities=40% Similarity=0.399 Sum_probs=13.1
Q ss_pred CEEEEccCCChhhHH
Q 003881 264 DIIGIAKTGSGKTAA 278 (789)
Q Consensus 264 dvll~a~TGsGKTla 278 (789)
-++|+++||||||..
T Consensus 9 lI~I~GptgSGKTtl 23 (340)
T 3d3q_A 9 LIVIVGPTASGKTEL 23 (340)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred eEEEECCCcCcHHHH
Confidence 478899999999975
No 424
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=29.69 E-value=31 Score=35.24 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=14.0
Q ss_pred CCEEEEccCCChhhHH
Q 003881 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll~a~TGsGKTla 278 (789)
..+++.+++|+|||..
T Consensus 48 ~~~ll~G~~GtGKt~l 63 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTEL 63 (311)
T ss_dssp EEEEEESCSSSSHHHH
T ss_pred eEEEEECCCCcCHHHH
Confidence 3689999999999965
No 425
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=29.62 E-value=13 Score=47.10 Aligned_cols=43 Identities=21% Similarity=0.314 Sum_probs=32.6
Q ss_pred cCceeEEEEeccchhccCCChHHHHHHHhhcCCCceEEEEecc
Q 003881 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT 412 (789)
Q Consensus 370 l~~i~~lVvDEah~m~~~~f~~~i~~il~~l~~~~q~ll~SAT 412 (789)
+++-.++|+||+=--+|..-+..+...+..+..++-+|+.+.-
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHr 612 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHR 612 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSC
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEccc
Confidence 5567889999999888887788888888777666656655543
No 426
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=29.52 E-value=35 Score=35.40 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=18.4
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHh
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l~ 288 (789)
.+.-+.+++++|+|||.. +..|..++
T Consensus 99 ~g~vi~lvG~nGsGKTTl--l~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTS--LGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHH--HHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHH--HHHHHHHH
Confidence 345678899999999974 44455544
No 427
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=29.29 E-value=29 Score=33.37 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=19.7
Q ss_pred HHHcCCCEEEEccCCChhhHHHHHHHHHHHh
Q 003881 258 IILSGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (789)
Q Consensus 258 ~il~grdvll~a~TGsGKTla~llpil~~l~ 288 (789)
.+..|+-+.+++|+|+|||.. +-++.-++
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL--l~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV--VRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH--HHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHH--HHHHHhhC
Confidence 466788889999999999974 44454443
No 428
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=28.74 E-value=23 Score=33.22 Aligned_cols=16 Identities=31% Similarity=0.302 Sum_probs=13.8
Q ss_pred CCEEEEccCCChhhHH
Q 003881 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll~a~TGsGKTla 278 (789)
.-+++++.+|+|||.+
T Consensus 6 ~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTL 21 (193)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4578899999999975
No 429
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=28.61 E-value=26 Score=32.48 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=14.4
Q ss_pred CCCEEEEccCCChhhHH
Q 003881 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvll~a~TGsGKTla 278 (789)
+..++++++.|+|||..
T Consensus 8 g~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAV 24 (175)
T ss_dssp SEEEEEECSTTSCHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 45688999999999975
No 430
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=28.50 E-value=27 Score=31.13 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=31.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHHcCCc-eeeccCCCC
Q 003881 469 DDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKD 505 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~-v~~lhg~~~ 505 (789)
...++||||.+-..+..++..|...|+. +..|.|++.
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 3568999999988888999999999995 889999864
No 431
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=28.26 E-value=63 Score=33.50 Aligned_cols=47 Identities=11% Similarity=0.229 Sum_probs=40.0
Q ss_pred CCEEEEecc-----------cccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhc
Q 003881 471 GDVLVFASK-----------KTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKS 518 (789)
Q Consensus 471 ~kvLVF~~s-----------~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~ 518 (789)
+-+|||+|. ..+++.|.+.|+..||.|. ++.+++..+-..+++.|..
T Consensus 61 r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~ 118 (302)
T 3e4c_A 61 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 118 (302)
T ss_dssp CEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred cEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHh
Confidence 358999987 4578999999999999965 5568999999999999964
No 432
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=27.79 E-value=44 Score=29.72 Aligned_cols=37 Identities=16% Similarity=0.329 Sum_probs=31.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHHcCCc-eeeccCCCC
Q 003881 469 DDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKD 505 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~-v~~lhg~~~ 505 (789)
.+.+++|||.+-......+..|...|+. +..|.|++.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 3568999999988899999999999995 888999874
No 433
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=27.73 E-value=35 Score=32.24 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=16.2
Q ss_pred CEEEEccCCChhhHHHHHHHHHHHh
Q 003881 264 DIIGIAKTGSGKTAAFVLPMIVHIM 288 (789)
Q Consensus 264 dvll~a~TGsGKTla~llpil~~l~ 288 (789)
.+.+.++.|+|||.. +-++..++
T Consensus 2 ~i~l~G~nGsGKTTL--l~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL--VKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHH
T ss_pred EEEEECCCCCCHHHH--HHHHHHHh
Confidence 478899999999964 34444443
No 434
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=27.58 E-value=56 Score=30.70 Aligned_cols=23 Identities=17% Similarity=0.046 Sum_probs=15.5
Q ss_pred CEEEEccCCChhhHHHHHHHHHHH
Q 003881 264 DIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 264 dvll~a~TGsGKTla~llpil~~l 287 (789)
-+.++++.|+|||.. +..++..+
T Consensus 6 ~i~i~G~sGsGKTTl-~~~L~~~l 28 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL-MEKWVAAA 28 (169)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHHHhh
Confidence 367889999999974 33344443
No 435
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=27.55 E-value=47 Score=28.34 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=31.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCC
Q 003881 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKD 505 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~ 505 (789)
...+++|||.+-..+..++..|...|+....|.|++.
T Consensus 55 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 55 KDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 4568999999988899999999999986678888864
No 436
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=27.48 E-value=24 Score=33.48 Aligned_cols=18 Identities=33% Similarity=0.246 Sum_probs=15.2
Q ss_pred cCCCEEEEccCCChhhHH
Q 003881 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla 278 (789)
.+.-++++++.|||||.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 356688999999999976
No 437
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=27.46 E-value=32 Score=33.75 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=15.8
Q ss_pred HHcCCCEEEEccCCChhhHH
Q 003881 259 ILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 259 il~grdvll~a~TGsGKTla 278 (789)
+..|+-+++++|.|+|||..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 45677889999999999974
No 438
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=27.44 E-value=31 Score=31.65 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=14.3
Q ss_pred CCEEEEccCCChhhHH
Q 003881 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll~a~TGsGKTla 278 (789)
+++++.+..|||||.+
T Consensus 8 ~~i~l~G~~GsGKSTv 23 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSL 23 (168)
T ss_dssp CEEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 5789999999999976
No 439
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=27.38 E-value=33 Score=39.99 Aligned_cols=69 Identities=16% Similarity=0.287 Sum_probs=49.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHH---cCCceeeccCCCCHHHHHHHHHHhhcCCcceEEeeh-----hhhccCC-CCCc
Q 003881 469 DDGDVLVFASKKTTVDEIESQLAQ---KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-----VAARGLD-IKSI 539 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~---~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-----v~~rGlD-I~~v 539 (789)
..+++||.++++.-+..+++.++. .++.+..++|+....++ ..+..+|+|+|. .+..+.. +..+
T Consensus 67 ~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~ 139 (702)
T 2p6r_A 67 KGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-------HLGDCDIIVTTSEKADSLIRNRASWIKAV 139 (702)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CSTTCSEEEEEHHHHHHHHHTTCSGGGGC
T ss_pred hCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hccCCCEEEECHHHHHHHHHcChhHHhhc
Confidence 367999999999999999888843 37889999998765442 124788999994 2223333 5667
Q ss_pred cEEEE
Q 003881 540 KSVVN 544 (789)
Q Consensus 540 ~~VI~ 544 (789)
.+||.
T Consensus 140 ~~vIi 144 (702)
T 2p6r_A 140 SCLVV 144 (702)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 77774
No 440
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=27.31 E-value=32 Score=32.79 Aligned_cols=16 Identities=31% Similarity=0.572 Sum_probs=14.1
Q ss_pred CCEEEEccCCChhhHH
Q 003881 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll~a~TGsGKTla 278 (789)
+-++++++.|+|||..
T Consensus 19 ~~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSV 34 (202)
T ss_dssp SCEEEECSTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4689999999999975
No 441
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=27.03 E-value=33 Score=35.91 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=17.2
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHH
Q 003881 263 RDIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 263 rdvll~a~TGsGKTla~llpil~~l 287 (789)
..+++.+|+|+|||.. +-++...
T Consensus 52 ~~~ll~Gp~G~GKTTL--a~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL--AHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHH--HHHHHHH
T ss_pred CeEEEECCCCCcHHHH--HHHHHHH
Confidence 6799999999999964 3344443
No 442
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=26.90 E-value=36 Score=31.51 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=13.9
Q ss_pred CCEEEEccCCChhhHH
Q 003881 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll~a~TGsGKTla 278 (789)
+.+++++++|||||..
T Consensus 5 ~~i~i~G~~GsGKsTl 20 (175)
T 1via_A 5 KNIVFIGFMGSGKSTL 20 (175)
T ss_dssp CCEEEECCTTSCHHHH
T ss_pred CEEEEEcCCCCCHHHH
Confidence 3689999999999975
No 443
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=26.89 E-value=33 Score=32.20 Aligned_cols=15 Identities=27% Similarity=0.286 Sum_probs=12.9
Q ss_pred CEEEEccCCChhhHH
Q 003881 264 DIIGIAKTGSGKTAA 278 (789)
Q Consensus 264 dvll~a~TGsGKTla 278 (789)
-+++++++|+|||..
T Consensus 4 ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 4 LYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCcHHHH
Confidence 467899999999975
No 444
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=26.86 E-value=30 Score=37.56 Aligned_cols=14 Identities=36% Similarity=0.487 Sum_probs=12.3
Q ss_pred EEEEccCCChhhHH
Q 003881 265 IIGIAKTGSGKTAA 278 (789)
Q Consensus 265 vll~a~TGsGKTla 278 (789)
++|++|||+|||..
T Consensus 5 i~i~GptgsGKttl 18 (409)
T 3eph_A 5 IVIAGTTGVGKSQL 18 (409)
T ss_dssp EEEEECSSSSHHHH
T ss_pred EEEECcchhhHHHH
Confidence 67899999999965
No 445
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=26.73 E-value=78 Score=33.59 Aligned_cols=26 Identities=8% Similarity=0.101 Sum_probs=15.7
Q ss_pred ChHHHHHHHhhcccccCceeEEEEecc
Q 003881 355 TPGRLIDMLKMKALTMSRVTYLVLDEA 381 (789)
Q Consensus 355 Tp~~L~~~l~~~~~~l~~i~~lVvDEa 381 (789)
++..+..++..-. .+..+++||||=.
T Consensus 243 ~~~~~~~ll~~l~-~~~~yD~VIID~p 268 (373)
T 3fkq_A 243 SYADIDTLIGNIQ-GMDNYDEIIVDLP 268 (373)
T ss_dssp CHHHHHHHHHHHH-HTSCCSEEEEECC
T ss_pred CHHHHHHHHHHHH-hcCCCCEEEEeCC
Confidence 5555555554322 3457899999944
No 446
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=26.58 E-value=35 Score=32.08 Aligned_cols=18 Identities=33% Similarity=0.351 Sum_probs=15.3
Q ss_pred cCCCEEEEccCCChhhHH
Q 003881 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla 278 (789)
.+.-+++++++|||||.+
T Consensus 11 ~~~~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQ 28 (199)
T ss_dssp HSCEEEEEECTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456789999999999975
No 447
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=26.53 E-value=40 Score=30.50 Aligned_cols=37 Identities=19% Similarity=0.399 Sum_probs=31.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHHcCCc-eeeccCCCC
Q 003881 469 DDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKD 505 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~-v~~lhg~~~ 505 (789)
...+++|||.+-..+..++..|...|+. +..|.|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 55 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred CCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 4567999999888889999999999985 888888854
No 448
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=26.40 E-value=27 Score=33.30 Aligned_cols=18 Identities=33% Similarity=0.287 Sum_probs=15.0
Q ss_pred cCCCEEEEccCCChhhHH
Q 003881 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla 278 (789)
.+.-++++++.|||||.+
T Consensus 3 ~~~~I~i~G~~GsGKsT~ 20 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQ 20 (213)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCeEEEEEcCCCCCHHHH
Confidence 355688999999999975
No 449
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=26.35 E-value=47 Score=35.39 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=18.0
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHh
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l~ 288 (789)
+.-+.+++++|+|||.. +..|..++
T Consensus 157 g~vi~lvG~nGsGKTTl--l~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTS--LGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHH--HHHHHHHH
T ss_pred CeEEEEEcCCCChHHHH--HHHHHhhc
Confidence 45578899999999974 44455544
No 450
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=26.24 E-value=93 Score=34.48 Aligned_cols=90 Identities=19% Similarity=0.166 Sum_probs=51.7
Q ss_pred EEecCCCcccHHH----HHHhcCCCCCCCCEEEEecccccHHHHHHHHHHcC----CceeeccCCCCHHHHHHHHHHhhc
Q 003881 447 VHVIPSDAEKLPW----LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKG----FKAAALHGDKDQASRMEILQKFKS 518 (789)
Q Consensus 447 ~~~~~~~~~k~~~----L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g----~~v~~lhg~~~~~eR~~~l~~F~~ 518 (789)
+...+....|-.. ++..+.......++||.++++.-+..+.+.+.+.. +.+....++.... -..
T Consensus 162 ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 233 (508)
T 3fho_A 162 IGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPK--------GAK 233 (508)
T ss_dssp EEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC------------------C
T ss_pred EEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccc--------ccc
Confidence 3344455566542 34444443345589999999999999999988753 2333333322211 112
Q ss_pred CCcceEEeehh-hh-----ccCCCCCccEEEE
Q 003881 519 GVYHVLIATDV-AA-----RGLDIKSIKSVVN 544 (789)
Q Consensus 519 G~~~VLVaT~v-~~-----rGlDI~~v~~VI~ 544 (789)
...+|+|+|.- +. ..+++..+++||.
T Consensus 234 ~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIi 265 (508)
T 3fho_A 234 IDAQIVIGTPGTVMDLMKRRQLDARDIKVFVL 265 (508)
T ss_dssp CCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred CCCCEEEECHHHHHHHHHcCCccccCCCEEEE
Confidence 36789999932 22 3567788888774
No 451
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=26.19 E-value=30 Score=32.97 Aligned_cols=18 Identities=33% Similarity=0.359 Sum_probs=14.9
Q ss_pred cCCCEEEEccCCChhhHH
Q 003881 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla 278 (789)
.+.-+++++++|+|||..
T Consensus 24 ~g~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTL 41 (200)
T ss_dssp CCEEEEEECSTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456688899999999975
No 452
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=26.14 E-value=1.1e+02 Score=25.83 Aligned_cols=47 Identities=17% Similarity=0.158 Sum_probs=35.1
Q ss_pred CCCEEEEec------ccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHh
Q 003881 470 DGDVLVFAS------KKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKF 516 (789)
Q Consensus 470 ~~kvLVF~~------s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F 516 (789)
..+++||.. .--.|..+..+|...++.+..++=+.....+.......
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~ 66 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFS 66 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHH
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHh
Confidence 457999977 45679999999999999888887766665555554443
No 453
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=26.04 E-value=66 Score=36.48 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=19.6
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHh
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l~ 288 (789)
.-++++.+.||||||.+ +-.++..++
T Consensus 214 ~pHlLIaG~TGSGKS~~-L~tlI~sLl 239 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVG-VNAMLLSIL 239 (574)
T ss_dssp SCCEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHH-HHHHHHHHH
Confidence 46899999999999975 444555444
No 454
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=25.96 E-value=51 Score=37.71 Aligned_cols=30 Identities=17% Similarity=0.310 Sum_probs=21.8
Q ss_pred HHHHcCCCEEEEccCCChhhHHHHHHHHHHHh
Q 003881 257 PIILSGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (789)
Q Consensus 257 ~~il~grdvll~a~TGsGKTla~llpil~~l~ 288 (789)
..+..++.+++.+|+|+|||.. +-++..++
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtl--ar~ia~~l 84 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSML--GQAMAELL 84 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHH--HHHHHHTS
T ss_pred ccccCCCEEEEEeCCCCCHHHH--HHHHhccC
Confidence 3456788999999999999964 33444443
No 455
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=25.91 E-value=43 Score=31.96 Aligned_cols=41 Identities=17% Similarity=0.150 Sum_probs=24.7
Q ss_pred cCceeEEEEeccchhc--cCCChHHHHHHHhhcCCCceEEEEeccC
Q 003881 370 MSRVTYLVLDEADRMF--DLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (789)
Q Consensus 370 l~~i~~lVvDEah~m~--~~~f~~~i~~il~~l~~~~q~ll~SAT~ 413 (789)
+...++||+||+..|- +..|...+..++.. ...+|+-+.|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeec
Confidence 5667899999988773 33355555555543 22344445664
No 456
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=25.79 E-value=1e+02 Score=33.65 Aligned_cols=12 Identities=17% Similarity=0.379 Sum_probs=6.1
Q ss_pred EeccCcHHHHHH
Q 003881 409 FSATMPRKVEKL 420 (789)
Q Consensus 409 ~SAT~~~~i~~l 420 (789)
|+..||+.+..|
T Consensus 1 mt~~lPp~L~~l 12 (437)
T 3pgw_S 1 MTQFLPPNLLAL 12 (437)
T ss_pred CCCcCCccHHHh
Confidence 345566664433
No 457
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=25.73 E-value=34 Score=32.90 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=17.1
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHh
Q 003881 262 GRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (789)
Q Consensus 262 grdvll~a~TGsGKTla~llpil~~l~ 288 (789)
+.-+.+++++|||||.. +-+|..++
T Consensus 22 g~~v~I~G~sGsGKSTl--~~~l~~~~ 46 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTL--SNPLAAAL 46 (208)
T ss_dssp CEEEEEECCTTSCTHHH--HHHHHHHH
T ss_pred CeEEEEECCCCCCHHHH--HHHHHHHH
Confidence 44577889999999964 44444443
No 458
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=25.69 E-value=38 Score=34.37 Aligned_cols=53 Identities=15% Similarity=0.255 Sum_probs=24.9
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHHH-HHHHHH--HcCCCEEEEccCCChhhHH
Q 003881 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQC-QALPII--LSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 223 pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~-~~i~~i--l~grdvll~a~TGsGKTla 278 (789)
|-.+|++++-...+.+.|...- ..|+.. +++..+ .-.+.+++.+|.|+|||+.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp -------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 3456888776666666665320 111111 112111 1124599999999999964
No 459
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=25.66 E-value=28 Score=33.51 Aligned_cols=29 Identities=21% Similarity=0.067 Sum_probs=20.3
Q ss_pred cHHHHHHHHHHHcCCCEEEEccCCChhhHH
Q 003881 249 TSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 249 tpiQ~~~i~~il~grdvll~a~TGsGKTla 278 (789)
++.+... ..+..+.-+++++.+|+|||..
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~ 41 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTL 41 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHH
Confidence 3444444 2344567788999999999975
No 460
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=25.65 E-value=4.1e+02 Score=24.74 Aligned_cols=127 Identities=11% Similarity=-0.004 Sum_probs=46.0
Q ss_pred HcCCCEEEEccCCChhhHHHHHHHHHHHhcCcc-----ccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCC-eEEEEE
Q 003881 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPE-----LQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGI-RVSAVY 333 (789)
Q Consensus 260 l~grdvll~a~TGsGKTla~llpil~~l~~~~~-----~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i-~v~~~~ 333 (789)
+.|-.+-+....|-|=|+.+.+|+......... .....+.++|||-........+...+..+ ++ .+..+
T Consensus 18 ~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~----g~~~v~~a- 92 (206)
T 3mm4_A 18 SHMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKM----GVSEVEQC- 92 (206)
T ss_dssp -------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHT----TCSEEEEE-
T ss_pred ccCCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHc----CCCeeeee-
Confidence 344456677788889898888886433211110 01123457888887766665544444433 54 33222
Q ss_pred CCCChHHHHHHHhcCCcEEEeChHHHHHHHhhc--------ccccCceeEEEEeccchhccCCChHHHHHHHhh---cCC
Q 003881 334 GGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK--------ALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQ---IRP 402 (789)
Q Consensus 334 gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~--------~~~l~~i~~lVvDEah~m~~~~f~~~i~~il~~---l~~ 402 (789)
.+....+..+... ...-..+++||+|= .|.+++-...+..+... ..+
T Consensus 93 --------------------~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~--~lp~~~G~el~~~lr~~~~~~~~ 150 (206)
T 3mm4_A 93 --------------------DSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDC--QMPEMDGYEATREIRKVEKSYGV 150 (206)
T ss_dssp --------------------SSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEES--CCSSSCHHHHHHHHHHHHHTTTC
T ss_pred --------------------CCHHHHHHHHHhhcccccccccccCCCCCEEEEcC--CCCCCCHHHHHHHHHhhhhhcCC
Confidence 2233333433321 11123577899883 23333322233333322 246
Q ss_pred CceEEEEeccC
Q 003881 403 DRQTLLFSATM 413 (789)
Q Consensus 403 ~~q~ll~SAT~ 413 (789)
...+|++|+..
T Consensus 151 ~~piI~ls~~~ 161 (206)
T 3mm4_A 151 RTPIIAVSGHD 161 (206)
T ss_dssp CCCEEEEESSC
T ss_pred CCcEEEEECCC
Confidence 77899999976
No 461
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=25.57 E-value=62 Score=37.82 Aligned_cols=25 Identities=36% Similarity=0.562 Sum_probs=19.5
Q ss_pred HHHHHHHcCCCE--EEEccCCChhhHH
Q 003881 254 QALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 254 ~~i~~il~grdv--ll~a~TGsGKTla 278 (789)
..|..+++|.|+ +..++||||||.+
T Consensus 453 ~~v~~~~~G~n~~i~ayGqtgsGKT~T 479 (715)
T 4h1g_A 453 QLIQCSLDGTNVCVFAYGQTGSGKTFT 479 (715)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHhCCceEEEEccCCCCCchhhc
Confidence 357778899874 4458999999976
No 462
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=25.41 E-value=1.2e+02 Score=32.96 Aligned_cols=67 Identities=16% Similarity=0.082 Sum_probs=44.4
Q ss_pred CCEEEEecccccHHHHHHHHHHc-----CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeeh-hhh------ccCCCCC
Q 003881 471 GDVLVFASKKTTVDEIESQLAQK-----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA------RGLDIKS 538 (789)
Q Consensus 471 ~kvLVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~~------rGlDI~~ 538 (789)
.++||.++++.-+..+++.+.+. ++.+..+.++.... .......+|+|+|. .+. ..+++..
T Consensus 163 ~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 235 (479)
T 3fmp_B 163 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE-------RGQKISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (479)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCC-------TTCCCCCSEEEECHHHHHHHHTTSCCCCGGG
T ss_pred CcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccc-------ccccCCCCEEEECchHHHHHHHhcCCcCccc
Confidence 38999999999999987777653 45555555544321 11133568999994 221 3577788
Q ss_pred ccEEEE
Q 003881 539 IKSVVN 544 (789)
Q Consensus 539 v~~VI~ 544 (789)
+.+||.
T Consensus 236 ~~~iVi 241 (479)
T 3fmp_B 236 IKVFVL 241 (479)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888885
No 463
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=25.35 E-value=1e+02 Score=29.11 Aligned_cols=47 Identities=11% Similarity=0.229 Sum_probs=39.0
Q ss_pred CCEEEEeccc-----------ccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhc
Q 003881 471 GDVLVFASKK-----------TTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKS 518 (789)
Q Consensus 471 ~kvLVF~~s~-----------~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~ 518 (789)
+.+|||.+.. .+++.|.+.|+..||.|. ++.+++..+-..+++.|..
T Consensus 44 g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~f~~ 101 (178)
T 2h54_A 44 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 101 (178)
T ss_dssp CEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred CEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHh
Confidence 4578887753 678999999999999975 5678999999999999964
No 464
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=25.29 E-value=41 Score=32.58 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=14.3
Q ss_pred CCEEEEccCCChhhHH
Q 003881 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll~a~TGsGKTla 278 (789)
..+++++++|||||.+
T Consensus 6 ~~I~l~G~~GsGKsT~ 21 (222)
T 1zak_A 6 LKVMISGAPASGKGTQ 21 (222)
T ss_dssp CCEEEEESTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 5689999999999976
No 465
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=25.26 E-value=3.2e+02 Score=26.38 Aligned_cols=81 Identities=17% Similarity=0.165 Sum_probs=49.4
Q ss_pred HcCCCEEEEccCC-ChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCCh
Q 003881 260 LSGRDIIGIAKTG-SGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSK 338 (789)
Q Consensus 260 l~grdvll~a~TG-sGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~ 338 (789)
+.++.+||.+.+| .|+.++ .++.+ .+..++++.-..+-+.++..++... +-++..+......
T Consensus 7 ~~~k~vlITGas~giG~~~a------~~l~~-------~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~ 69 (253)
T 3qiv_A 7 FENKVGIVTGSGGGIGQAYA------EALAR-------EGAAVVVADINAEAAEAVAKQIVAD----GGTAISVAVDVSD 69 (253)
T ss_dssp TTTCEEEEETTTSHHHHHHH------HHHHH-------TTCEEEEEESCHHHHHHHHHHHHHT----TCEEEEEECCTTS
T ss_pred cCCCEEEEECCCChHHHHHH------HHHHH-------CCCEEEEEcCCHHHHHHHHHHHHhc----CCcEEEEEccCCC
Confidence 4567788877654 377654 22222 2566777777777666666665543 4566677777776
Q ss_pred HHHHHHHhc-------CCcEEEeChH
Q 003881 339 LDQFKELKA-------GCEIVIATPG 357 (789)
Q Consensus 339 ~~~~~~l~~-------~~dIiV~Tp~ 357 (789)
.+.+..+.. ..|++|...+
T Consensus 70 ~~~~~~~~~~~~~~~g~id~li~~Ag 95 (253)
T 3qiv_A 70 PESAKAMADRTLAEFGGIDYLVNNAA 95 (253)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 665554432 5677776654
No 466
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=25.15 E-value=38 Score=32.77 Aligned_cols=17 Identities=24% Similarity=0.387 Sum_probs=14.5
Q ss_pred CCCEEEEccCCChhhHH
Q 003881 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvll~a~TGsGKTla 278 (789)
+..+++++++|||||.+
T Consensus 4 ~~~I~l~G~~GsGKsT~ 20 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQ 20 (220)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 35688999999999976
No 467
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=25.14 E-value=36 Score=33.14 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=14.6
Q ss_pred CCCEEEEccCCChhhHH
Q 003881 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvll~a~TGsGKTla 278 (789)
...+++++++|||||.+
T Consensus 7 ~~~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTV 23 (227)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 35689999999999975
No 468
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=25.12 E-value=36 Score=31.68 Aligned_cols=15 Identities=27% Similarity=0.178 Sum_probs=13.0
Q ss_pred CEEEEccCCChhhHH
Q 003881 264 DIIGIAKTGSGKTAA 278 (789)
Q Consensus 264 dvll~a~TGsGKTla 278 (789)
-++++++.|+|||.+
T Consensus 3 ~I~i~G~~GsGKsT~ 17 (194)
T 1nks_A 3 IGIVTGIPGVGKSTV 17 (194)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999975
No 469
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=25.07 E-value=98 Score=37.72 Aligned_cols=65 Identities=15% Similarity=0.165 Sum_probs=47.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHHc--CCceeeccCCCCHHHHHHHHHHhhcCCcceEEeeh-hh----hcc-CCCCCcc
Q 003881 469 DDGDVLVFASKKTTVDEIESQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA----ARG-LDIKSIK 540 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~--g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~----~rG-lDI~~v~ 540 (789)
...++||.++++.-+..+++.|.+. ++.+..++|+.+ .++..+|||+|. .+ .++ ..+..+.
T Consensus 81 ~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~-----------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~ 149 (997)
T 4a4z_A 81 NMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQ-----------INPDANCLIMTTEILRSMLYRGADLIRDVE 149 (997)
T ss_dssp TTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCE-----------ECTTSSEEEEEHHHHHHHHHHTCSGGGGEE
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCc-----------cCCCCCEEEECHHHHHHHHHhCchhhcCCC
Confidence 3568999999999999999999885 678999999875 245678999984 22 222 3455666
Q ss_pred EEEE
Q 003881 541 SVVN 544 (789)
Q Consensus 541 ~VI~ 544 (789)
+||.
T Consensus 150 lvVi 153 (997)
T 4a4z_A 150 FVIF 153 (997)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6664
No 470
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=25.02 E-value=32 Score=37.68 Aligned_cols=53 Identities=19% Similarity=0.169 Sum_probs=29.2
Q ss_pred CCCCCcccCCCCHHHHHHHHHcCC---CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHH
Q 003881 222 RPVKTFEDCGFSTQLMHAISKQGY---EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~g~---~~ptpiQ~~~i~~il~grdvll~a~TGsGKTla 278 (789)
.|-.+|+++.-...+.+.|...-. ..|.-++ ......+.+|+.+|+|+|||+.
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~----~~~~~~~~vLL~GppGtGKT~l 183 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT----GKRTPWRGILLFGPPGTGKSYL 183 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTS----GGGCCCSEEEEECSTTSSHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhh----ccCCCCceEEEECCCCCCHHHH
Confidence 344678887666666655543200 0000000 0011236799999999999964
No 471
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=24.88 E-value=28 Score=35.72 Aligned_cols=16 Identities=31% Similarity=0.366 Sum_probs=13.7
Q ss_pred CCEEEEccCCChhhHH
Q 003881 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll~a~TGsGKTla 278 (789)
.-++++|++|+|||..
T Consensus 34 ~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSL 49 (287)
T ss_dssp EEEEEECCTTSCTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3588899999999975
No 472
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=24.70 E-value=1.3e+02 Score=33.09 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=17.2
Q ss_pred HHcCCCEEEEccCCChhhHH
Q 003881 259 ILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 259 il~grdvll~a~TGsGKTla 278 (789)
+..|+.+++.++.|+|||..
T Consensus 148 i~kGq~~~i~G~sGvGKTtL 167 (473)
T 1sky_E 148 YIKGGKIGLFGGAGVGKTVL 167 (473)
T ss_dssp EETTCEEEEECCSSSCHHHH
T ss_pred hccCCEEEEECCCCCCccHH
Confidence 34788899999999999975
No 473
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=24.69 E-value=38 Score=31.55 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=13.2
Q ss_pred CEEEEccCCChhhHH
Q 003881 264 DIIGIAKTGSGKTAA 278 (789)
Q Consensus 264 dvll~a~TGsGKTla 278 (789)
-++++++.|||||.+
T Consensus 8 ~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999975
No 474
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=24.66 E-value=43 Score=32.23 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=17.0
Q ss_pred CEEEEccCCChhhHHHHHHHHHHHhc
Q 003881 264 DIIGIAKTGSGKTAAFVLPMIVHIMD 289 (789)
Q Consensus 264 dvll~a~TGsGKTla~llpil~~l~~ 289 (789)
-.++++++|+|||.. +-++..++.
T Consensus 25 ~~~I~G~NgsGKSti--l~ai~~~l~ 48 (203)
T 3qks_A 25 INLIIGQNGSGKSSL--LDAILVGLY 48 (203)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHHH
T ss_pred eEEEEcCCCCCHHHH--HHHHHHHhc
Confidence 467889999999965 444555444
No 475
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=24.59 E-value=28 Score=32.48 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=14.8
Q ss_pred cCCCEEEEccCCChhhHH
Q 003881 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla 278 (789)
.+.-+++++..|||||.+
T Consensus 4 ~g~~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTV 21 (179)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 355678899999999975
No 476
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=24.57 E-value=38 Score=32.87 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=14.0
Q ss_pred CEEEEccCCChhhHHHH
Q 003881 264 DIIGIAKTGSGKTAAFV 280 (789)
Q Consensus 264 dvll~a~TGsGKTla~l 280 (789)
.+++.+|+||||++++-
T Consensus 2 ~Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37888999999998744
No 477
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=24.48 E-value=1.1e+02 Score=26.27 Aligned_cols=56 Identities=11% Similarity=0.128 Sum_probs=33.6
Q ss_pred CeEEEEcCcHHHHHHHHH-HHHHHhhhcCCe-EEEEECCCChHHHHHHHhcCCcEEEeChH
Q 003881 299 PIGVICAPTRELAHQIYL-ETKKFAKSHGIR-VSAVYGGMSKLDQFKELKAGCEIVIATPG 357 (789)
Q Consensus 299 p~vLIl~PtreLa~Qi~~-~~~~~~~~~~i~-v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~ 357 (789)
.++|++|++=--..++.. .+++.++..++. +.+..-... ........+|+||+|+.
T Consensus 19 ~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i~~~~~~---~~~~~~~~~DlIi~t~~ 76 (110)
T 3czc_A 19 VKVLTACGNGMGSSMVIKMKVENALRQLGVSDIESASCSVG---EAKGLASNYDIVVASNH 76 (110)
T ss_dssp EEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECHH---HHHHHGGGCSEEEEETT
T ss_pred cEEEEECCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEeeHH---HHhhccCCCcEEEECCc
Confidence 468899987655555554 677777766765 433332221 22222356999999983
No 478
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=24.31 E-value=43 Score=30.62 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=13.9
Q ss_pred CCEEEEccCCChhhHH
Q 003881 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll~a~TGsGKTla 278 (789)
+.++++++.|||||.+
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTV 18 (173)
T ss_dssp CCEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4588999999999975
No 479
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=24.30 E-value=46 Score=30.98 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=13.9
Q ss_pred CCEEEEccCCChhhHH
Q 003881 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvll~a~TGsGKTla 278 (789)
..+++++++|||||.+
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTI 18 (184)
T ss_dssp CSEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4588999999999975
No 480
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=24.17 E-value=5.8e+02 Score=25.94 Aligned_cols=55 Identities=11% Similarity=0.175 Sum_probs=32.1
Q ss_pred HHHHHHHhhcccccCceeEEEEeccch-hccCCChHHHHHHHhhcCCCceEEEEeccC
Q 003881 357 GRLIDMLKMKALTMSRVTYLVLDEADR-MFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (789)
Q Consensus 357 ~~L~~~l~~~~~~l~~i~~lVvDEah~-m~~~~f~~~i~~il~~l~~~~q~ll~SAT~ 413 (789)
..+.+.+....+ +....+|||||+|. |... ....+...+...+++..+|+.+.++
T Consensus 62 ~~l~~~~~~~pl-f~~~kvvii~~~~~kl~~~-~~~aLl~~le~p~~~~~~il~~~~~ 117 (343)
T 1jr3_D 62 NAIFSLCQAMSL-FASRQTLLLLLPENGPNAA-INEQLLTLTGLLHDDLLLIVRGNKL 117 (343)
T ss_dssp HHHHHHHHHHHH-CCSCEEEEEECCSSCCCTT-HHHHHHHHHTTCBTTEEEEEEESCC
T ss_pred HHHHHHhcCcCC-ccCCeEEEEECCCCCCChH-HHHHHHHHHhcCCCCeEEEEEcCCC
Confidence 334444433222 45678999999998 6432 3445666666655555555555444
No 481
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=24.14 E-value=46 Score=36.70 Aligned_cols=17 Identities=35% Similarity=0.448 Sum_probs=14.8
Q ss_pred CCCEEEEccCCChhhHH
Q 003881 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvll~a~TGsGKTla 278 (789)
..++|+++++|+|||..
T Consensus 201 ~~~~LL~G~pG~GKT~l 217 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAI 217 (468)
T ss_dssp SCEEEEESCTTTTTHHH
T ss_pred CCCeEEECCCCCCHHHH
Confidence 35899999999999975
No 482
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=24.05 E-value=28 Score=32.30 Aligned_cols=17 Identities=29% Similarity=0.120 Sum_probs=10.6
Q ss_pred CCCEEEEccCCChhhHH
Q 003881 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvll~a~TGsGKTla 278 (789)
+.-+++++..|||||.+
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHT 21 (183)
T ss_dssp CCEEEEECCC----CHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45688999999999976
No 483
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=23.98 E-value=95 Score=31.54 Aligned_cols=39 Identities=15% Similarity=0.213 Sum_probs=33.0
Q ss_pred cccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcC
Q 003881 480 KTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSG 519 (789)
Q Consensus 480 ~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G 519 (789)
..+++.|.+.|+..||.|. ++.+++..+-.++++.|..-
T Consensus 48 ~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~~ 86 (271)
T 3h11_B 48 HLDAGALTTTFEELHFEIK-PHDDCTVEQIYEILKIYQLM 86 (271)
T ss_dssp HHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHHHh
Confidence 3578999999999999965 55689999999999999753
No 484
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=23.87 E-value=1.2e+02 Score=26.40 Aligned_cols=48 Identities=21% Similarity=0.172 Sum_probs=33.6
Q ss_pred CCCCCCCEEEEecc------cccHHHHHHHHHHcCCc---eeeccCCCCHHHHHHHH
Q 003881 466 GMIDDGDVLVFASK------KTTVDEIESQLAQKGFK---AAALHGDKDQASRMEIL 513 (789)
Q Consensus 466 ~~~~~~kvLVF~~s------~~~a~~l~~~L~~~g~~---v~~lhg~~~~~eR~~~l 513 (789)
..+...+|+||..+ --.|..+...|...++. +..+.=......+....
T Consensus 11 ~~i~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~ 67 (121)
T 3gx8_A 11 DAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIK 67 (121)
T ss_dssp HHHHSCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHH
T ss_pred HHhccCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHH
Confidence 33446799999984 67899999999999887 55555444554444433
No 485
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=23.81 E-value=2.1e+02 Score=31.25 Aligned_cols=95 Identities=18% Similarity=0.214 Sum_probs=58.9
Q ss_pred CCChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHH---HHHHhc
Q 003881 271 TGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ---FKELKA 347 (789)
Q Consensus 271 TGsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~---~~~l~~ 347 (789)
..++|... ++-++..+.. .+.++||.+.++..+..+...+.+.. ++.+..++|+.+..+. +..+..
T Consensus 322 ~~s~K~~~-l~~~l~~~~~-------~~~k~lvF~~~~~~~~~l~~~l~~~~---~~~~~~~~g~~~~~~R~~~~~~F~~ 390 (500)
T 1z63_A 322 RRSGKMIR-TMEIIEEALD-------EGDKIAIFTQFVDMGKIIRNIIEKEL---NTEVPFLYGELSKKERDDIISKFQN 390 (500)
T ss_dssp TTCHHHHH-HHHHHHHHHT-------TTCCEEEECSCHHHHHHHHHHHHHHH---TCCCCEEETTSCHHHHHHHHHHHHH
T ss_pred hcchhHHH-HHHHHHHHHc-------cCCcEEEEEehHHHHHHHHHHHHHhh---CCCeEEEECCCCHHHHHHHHHHhcC
Confidence 34677654 4444444432 35679999999998887777666532 6778889998875443 333444
Q ss_pred C--Cc-EEEeChHHHHHHHhhcccccCceeEEEEeccc
Q 003881 348 G--CE-IVIATPGRLIDMLKMKALTMSRVTYLVLDEAD 382 (789)
Q Consensus 348 ~--~d-IiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah 382 (789)
+ +. |+++|- .. ...+++..++.||+=+..
T Consensus 391 ~~~~~vil~st~-----~~-~~Glnl~~~~~vi~~d~~ 422 (500)
T 1z63_A 391 NPSVKFIVLSVK-----AG-GFGINLTSANRVIHFDRW 422 (500)
T ss_dssp CTTCCCCEEECC-----CC--CCCCCTTCSEEEESSCC
T ss_pred CCCCCEEEEecc-----cc-cCCCchhhCCEEEEeCCC
Confidence 4 33 566662 11 234567788888875544
No 486
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=23.74 E-value=33 Score=32.61 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=13.2
Q ss_pred CEEEEccCCChhhHH
Q 003881 264 DIIGIAKTGSGKTAA 278 (789)
Q Consensus 264 dvll~a~TGsGKTla 278 (789)
-++++++.|||||.+
T Consensus 17 ~I~l~G~~GsGKsT~ 31 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQ 31 (203)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999975
No 487
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=23.71 E-value=40 Score=32.31 Aligned_cols=15 Identities=27% Similarity=0.505 Sum_probs=13.2
Q ss_pred CEEEEccCCChhhHH
Q 003881 264 DIIGIAKTGSGKTAA 278 (789)
Q Consensus 264 dvll~a~TGsGKTla 278 (789)
.+++.++.|||||.+
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999976
No 488
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=23.66 E-value=63 Score=33.68 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=13.8
Q ss_pred CCCEEEEccCCChhhHH
Q 003881 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvll~a~TGsGKTla 278 (789)
++-+++++++|+|||..
T Consensus 105 ~~vI~ivG~~G~GKTT~ 121 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTS 121 (320)
T ss_dssp CEEEEEESSTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34577889999999975
No 489
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=23.55 E-value=38 Score=30.26 Aligned_cols=37 Identities=8% Similarity=0.288 Sum_probs=31.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHHcCCc-eeeccCCCC
Q 003881 469 DDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKD 505 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~-v~~lhg~~~ 505 (789)
...+++|||.+-..+..++..|...|+. +..+.|++.
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 3568999999988899999999999995 888888864
No 490
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=23.44 E-value=1.1e+02 Score=28.63 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=39.3
Q ss_pred CCCEEEEeccc--------------ccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhc
Q 003881 470 DGDVLVFASKK--------------TTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKS 518 (789)
Q Consensus 470 ~~kvLVF~~s~--------------~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~ 518 (789)
.+.+|||.+.. .+++.|.+.|...||.| .++.+++..+-..+++.|.+
T Consensus 33 rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V-~~~~dlt~~em~~~l~~~~~ 94 (167)
T 1pyo_A 33 RGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDV-HVLCDQTAQEMQEKLQNFAQ 94 (167)
T ss_dssp SEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTTEEE-EEEESCCHHHHHHHHHHHHT
T ss_pred ceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCCCEE-EEeeCCCHHHHHHHHHHhhh
Confidence 45678887752 27899999999999987 55678999999999999976
No 491
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=23.37 E-value=43 Score=35.65 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=13.3
Q ss_pred CEEEEccCCChhhHHH
Q 003881 264 DIIGIAKTGSGKTAAF 279 (789)
Q Consensus 264 dvll~a~TGsGKTla~ 279 (789)
-.++++++|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999753
No 492
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=23.34 E-value=2e+02 Score=33.55 Aligned_cols=38 Identities=13% Similarity=0.081 Sum_probs=30.6
Q ss_pred CCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHH
Q 003881 470 DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQAS 508 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~e 508 (789)
...+.|.+.+...+..+.+.|.+.++++.+..| .+-.+
T Consensus 351 ~~diAIL~R~~~~~~~le~~L~~~gIPy~~~g~-~~f~~ 388 (724)
T 1pjr_A 351 YRDFAVLYRTNAQSRVMEEMLLKANIPYQIVGG-LKFYD 388 (724)
T ss_dssp GGGEEEEESSGGGHHHHHHHHHHTTCCEEEETS-CCGGG
T ss_pred hhheeeeeecchhHHHHHHHHHHcCCCEEEeCC-cchhh
Confidence 347999999999999999999999999877654 44333
No 493
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=23.25 E-value=2.7e+02 Score=32.78 Aligned_cols=94 Identities=11% Similarity=0.129 Sum_probs=58.1
Q ss_pred CChhhHHHHHHHHHHHhcCccccccCCCeEEEEcCcHHHHHHHHHHHHHHhhhcCCeEEEEECCCChHHHHHHHhc----
Q 003881 272 GSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKA---- 347 (789)
Q Consensus 272 GsGKTla~llpil~~l~~~~~~~~~~gp~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~---- 347 (789)
.+||-.. +.-++..+. ..+.++||.+..+..+.-+...+... ++.+..++|+.+..+....+..
T Consensus 554 ~s~K~~~-L~~lL~~~~-------~~g~kvLIFsq~~~~ld~L~~~L~~~----g~~~~~i~G~~~~~eR~~~i~~F~~~ 621 (800)
T 3mwy_W 554 SSGKMVL-LDQLLTRLK-------KDGHRVLIFSQMVRMLDILGDYLSIK----GINFQRLDGTVPSAQRRISIDHFNSP 621 (800)
T ss_dssp TCHHHHH-HHHHHHHHT-------TTTCCEEEEESCHHHHHHHHHHHHHH----TCCCEEESTTSCHHHHHHHHHTTSST
T ss_pred cChHHHH-HHHHHHHHh-------hCCCeEEEEechHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhCC
Confidence 4677653 555555553 23567999999988877665555443 8888999999877655444322
Q ss_pred CCc--EEEeChHHHHHHHhhcccccCceeEEEEeccc
Q 003881 348 GCE--IVIATPGRLIDMLKMKALTMSRVTYLVLDEAD 382 (789)
Q Consensus 348 ~~d--IiV~Tp~~L~~~l~~~~~~l~~i~~lVvDEah 382 (789)
... |+++|...+ ...++|..++.||+=+.+
T Consensus 622 ~~~~~v~LlSt~ag-----g~GlNL~~a~~VI~~D~~ 653 (800)
T 3mwy_W 622 DSNDFVFLLSTRAG-----GLGINLMTADTVVIFDSD 653 (800)
T ss_dssp TCSCCCEEEEHHHH-----TTTCCCTTCCEEEESSCC
T ss_pred CCCceEEEEecccc-----cCCCCccccceEEEecCC
Confidence 122 444443222 335577788888774444
No 494
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=23.24 E-value=38 Score=31.74 Aligned_cols=17 Identities=35% Similarity=0.335 Sum_probs=14.4
Q ss_pred CCCEEEEccCCChhhHH
Q 003881 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvll~a~TGsGKTla 278 (789)
+..+++++.+|+|||..
T Consensus 13 ~~~i~l~G~~GsGKsT~ 29 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTI 29 (186)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 45688999999999975
No 495
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=23.20 E-value=42 Score=31.61 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=13.0
Q ss_pred CEEEEccCCChhhHH
Q 003881 264 DIIGIAKTGSGKTAA 278 (789)
Q Consensus 264 dvll~a~TGsGKTla 278 (789)
.+++.+.+|||||..
T Consensus 2 ~I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 378899999999975
No 496
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=23.08 E-value=46 Score=34.54 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=19.5
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHh
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpil~~l~ 288 (789)
.|.-+.+++++|+|||.. +-+|..++
T Consensus 125 ~Ge~vaIvGpsGsGKSTL--l~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSML--CNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHH--HHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHH--HHHHhhhc
Confidence 567788999999999964 44555554
No 497
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=23.06 E-value=35 Score=31.19 Aligned_cols=15 Identities=33% Similarity=0.255 Sum_probs=13.1
Q ss_pred CEEEEccCCChhhHH
Q 003881 264 DIIGIAKTGSGKTAA 278 (789)
Q Consensus 264 dvll~a~TGsGKTla 278 (789)
.+++.+..|||||.+
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTV 16 (168)
T ss_dssp EEEEESCTTSCHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 478899999999975
No 498
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=23.02 E-value=32 Score=33.61 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=0.0
Q ss_pred cCCCEEEEccCCChhhHHHHHHH
Q 003881 261 SGRDIIGIAKTGSGKTAAFVLPM 283 (789)
Q Consensus 261 ~grdvll~a~TGsGKTla~llpi 283 (789)
.|+-+.+++++|+|||...-+.+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
No 499
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=22.97 E-value=43 Score=32.18 Aligned_cols=19 Identities=16% Similarity=0.160 Sum_probs=0.0
Q ss_pred EEEEccCCChhhHHHHHHH
Q 003881 265 IIGIAKTGSGKTAAFVLPM 283 (789)
Q Consensus 265 vll~a~TGsGKTla~llpi 283 (789)
++++++.|||||.+.-..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
No 500
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=22.89 E-value=32 Score=39.40 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=0.0
Q ss_pred HHHHHHHHcCC--------------CEEEEccCCChhhHHH
Q 003881 253 CQALPIILSGR--------------DIIGIAKTGSGKTAAF 279 (789)
Q Consensus 253 ~~~i~~il~gr--------------dvll~a~TGsGKTla~ 279 (789)
..++-..+.+. ++|+.+++|+|||..+
T Consensus 304 k~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 304 KEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQML 344 (595)
T ss_dssp HHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHH
T ss_pred HHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHH
Done!