BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003882
(789 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 59.7 bits (143), Expect = 7e-09, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 8/98 (8%)
Query: 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEV 439
+GIL+V +L A LL D G +D +C+ + G ++T T+ N NP+WN+ +T+ +
Sbjct: 12 VGILQVKVLKAADLL---AADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI 68
Query: 440 YDPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTL 477
D V+ + VFD G KP +GKV I L ++
Sbjct: 69 KDIHDVLEVTVFDE-----DGDKPPDFLGKVAIPLLSI 101
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 43/126 (34%), Positives = 63/126 (50%), Gaps = 8/126 (6%)
Query: 50 VEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSK 109
V+ + L V+V KA DL SG DP+ ++LGN + +T K NPEW +VF F
Sbjct: 9 VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI 68
Query: 110 EKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKV 169
+ I VLEV V D + D++GKV +P D P Y L+++ ++
Sbjct: 69 KDIH-DVLEVTVFDEDGDKPPDFLGKVA-----IPLLSIRDG--QPNCYVLKNKDLEQAF 120
Query: 170 KGEVML 175
KG + L
Sbjct: 121 KGVIYL 126
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 100/239 (41%), Gaps = 45/239 (18%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKL---GNYKGKTRHFEKKSNPEWKQVFAFSK--E 110
L VR+ +A DLP +G DPYV++ L K +T+ K NP + + F FS
Sbjct: 23 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 82
Query: 111 KIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVK 170
++ L V D + R D IG+VV D PPD PL W + + ++
Sbjct: 83 ELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL---WRDILEGGSEKADL 139
Query: 171 GEVMLAVWIGTQADEAFPEAWHSDAATVEGEGVFNIRSKVYVSPKLWYLRVNVIEAQDVE 230
GE+ ++ Y+ P L V +I+A +++
Sbjct: 140 GELNFSL--------------------------------CYL-PTAGLLTVTIIKASNLK 166
Query: 231 PLDKSQLPQAFVEAQV---GNQVLKTKLCPTRTT-NPLWNEDLIFVAAEPFEEQLVLTV 285
+D + +V+A + G ++ K K + T NP +NE L+F A E + L++
Sbjct: 167 AMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSI 225
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQ--VFAFS 108
L V + KA +L ++G DPYV+ L + K KT + NP + + VF +
Sbjct: 155 LTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVA 214
Query: 109 KEKIQSSVLEVFVRDREIVGRDDYIG 134
E +++ L + V D + +G ++ IG
Sbjct: 215 PESVENVGLSIAVVDYDCIGHNEVIG 240
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 100/239 (41%), Gaps = 45/239 (18%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKL---GNYKGKTRHFEKKSNPEWKQVFAFSK--E 110
L VR+ +A DLP +G DPYV++ L K +T+ K NP + + F FS
Sbjct: 22 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 81
Query: 111 KIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVK 170
++ L V D + R D IG+VV D PPD PL W + + ++
Sbjct: 82 ELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL---WRDILEGGSEKADL 138
Query: 171 GEVMLAVWIGTQADEAFPEAWHSDAATVEGEGVFNIRSKVYVSPKLWYLRVNVIEAQDVE 230
GE+ ++ Y+ P L V +I+A +++
Sbjct: 139 GELNFSL--------------------------------CYL-PTAGLLTVTIIKASNLK 165
Query: 231 PLDKSQLPQAFVEAQV---GNQVLKTKLCPTRTT-NPLWNEDLIFVAAEPFEEQLVLTV 285
+D + +V+A + G ++ K K + T NP +NE L+F A E + L++
Sbjct: 166 AMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSI 224
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQ--VFAFS 108
L V + KA +L ++G DPYV+ L + K KT + NP + + VF +
Sbjct: 154 LTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVA 213
Query: 109 KEKIQSSVLEVFVRDREIVGRDDYIG 134
E +++ L + V D + +G ++ IG
Sbjct: 214 PESVENVGLSIAVVDYDCIGHNEVIG 239
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKL---GNYKGKTRHFEKKSNPEWKQVF---AFSK 109
L V++ KA++LP SG+ DP+V++ L +K +T+ K NP W + F F
Sbjct: 28 LTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPY 87
Query: 110 EKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEV 143
EK+ +L + V D + R+D IG+V +N+V
Sbjct: 88 EKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKV 121
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 23/128 (17%)
Query: 63 ARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAF----SKEKIQSSVLE 118
A+ L +GS DPYV V++G K +T+ NP W++ F F S ++I+ VL+
Sbjct: 26 AQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLD 85
Query: 119 VFVRDREIVGR---------DDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKV 169
D +I R DD++G+ + ++ + + WY L+ R D V
Sbjct: 86 ---EDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEM-------DVWYNLDKRTDKSAV 135
Query: 170 KGEVMLAV 177
G + L +
Sbjct: 136 SGAIRLHI 143
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDP 442
+ + ++ AQGL + +D G++D Y + G RT+T+ N NP W E + +E ++
Sbjct: 19 ISITVVCAQGL---QAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNS 75
Query: 443 CTVITLGVFD 452
I + V D
Sbjct: 76 SDRIKVRVLD 85
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 19/134 (14%)
Query: 204 FNIRSKVYVSPKLWYLRVN--VIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTRTT 261
F ++ V W +++ V+ AQ ++ DK+ +V QVG +TK
Sbjct: 2 FAVKQSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTI-YGNL 60
Query: 262 NPLWNE----------DLIFVAAEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRL 311
NP+W E D I V ++ + V+ + D+ LG+ + + + +
Sbjct: 61 NPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEM 120
Query: 312 DHRPVHSKWFNLEK 325
D W+NL+K
Sbjct: 121 D------VWYNLDK 128
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 22/127 (17%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKL--------------GNYKGKTRHFEKKSNPEW 101
L + + +AR+L +G DP+V+V L YK +T++ +K NPEW
Sbjct: 20 LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEW 79
Query: 102 KQVFAF---SKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWY 158
Q + S E++ LEV V D + +D++G+V+ D++ D+ P+WY
Sbjct: 80 NQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHL---DN--TPRWY 134
Query: 159 RLEDRRD 165
L+++ +
Sbjct: 135 PLKEQTE 141
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 18/122 (14%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGK------TRHFEKKSNPEWKQVFAFS- 108
+ V + KAR+L + G+ DPYV+V L YK K T ++ NP + + FAF
Sbjct: 18 IIVNIIKARNLKAMDIGGTSDPYVKVWLM-YKDKRVEKKKTVTKKRNLNPIFNESFAFDI 76
Query: 109 -KEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVP--------PDSPLAPQWYR 159
EK++ + + + V D++ + R+D IGK+ P V P P+A QW++
Sbjct: 77 PTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVA-QWHQ 135
Query: 160 LE 161
L+
Sbjct: 136 LK 137
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 8/95 (8%)
Query: 56 LYVRVEKARDL-PTNPVSGSCDPYVEVKL-----GNYKGKTRHFEKKSNPEWKQVFAFS- 108
L V V A++L P +P +G DPYV++KL K KT+ + NPEW + F F
Sbjct: 33 LIVVVRDAKNLVPMDP-NGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQL 91
Query: 109 KEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEV 143
KE + L V + D ++ R+D++G + F ++E+
Sbjct: 92 KESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISEL 126
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 8/95 (8%)
Query: 56 LYVRVEKARDL-PTNPVSGSCDPYVEVKL-----GNYKGKTRHFEKKSNPEWKQVFAFS- 108
L V V A++L P +P +G DPYV++KL K KT+ + NPEW + F F
Sbjct: 174 LIVVVRDAKNLVPMDP-NGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQL 232
Query: 109 KEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEV 143
KE + L V + D ++ R+D++G + F ++E+
Sbjct: 233 KESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISEL 267
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY-----GLKWVRTRTLVDNFNPKWNEQYT 436
+L V + A+ L+PM D G +D Y K +T+T+ + NP+WNE +
Sbjct: 173 VLIVVVRDAKNLVPM---DPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFR 229
Query: 437 WEV 439
+++
Sbjct: 230 FQL 232
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 14/112 (12%)
Query: 56 LYVRVEKARDL-PTNPVSGSCDPYVEVKL-----GNYKGKTRHFEKKSNPEWKQVFAFS- 108
L+V V A++L P +P +G DPYV++KL K KT+ NP+W + F F
Sbjct: 19 LHVTVRDAKNLIPMDP-NGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 77
Query: 109 KEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRL 160
K + L V + D + R+D++G + F ++E+ ++P A WY+L
Sbjct: 78 KPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSEL-MKMP-----ASGWYKL 123
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKY-----GLKWVRTRTLVDNFNPKWNEQYTW 437
L V + A+ L+PM D G +D Y K +T+T+ NP+WNE +T+
Sbjct: 19 LHVTVRDAKNLIPM---DPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTF 75
Query: 438 EV 439
++
Sbjct: 76 KL 77
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 14/112 (12%)
Query: 56 LYVRVEKARDL-PTNPVSGSCDPYVEVKL-----GNYKGKTRHFEKKSNPEWKQVFAFS- 108
L+V V A++L P +P +G DPYV++KL K KT+ NP+W + F F
Sbjct: 18 LHVTVRDAKNLIPMDP-NGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 76
Query: 109 KEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRL 160
K + L V + D + R+D++G + F ++E+ ++P A WY+L
Sbjct: 77 KPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSEL-MKMP-----ASGWYKL 122
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKY-----GLKWVRTRTLVDNFNPKWNEQYTW 437
L V + A+ L+PM D G +D Y K +T+T+ NP+WNE +T+
Sbjct: 18 LHVTVRDAKNLIPM---DPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTF 74
Query: 438 EV 439
++
Sbjct: 75 KL 76
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 14/112 (12%)
Query: 56 LYVRVEKARDL-PTNPVSGSCDPYVEVKL-----GNYKGKTRHFEKKSNPEWKQVFAFS- 108
++V V +AR+L P +P +G DPYV++KL K KTR + NP W + F F+
Sbjct: 22 IHVTVGEARNLIPMDP-NGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNL 80
Query: 109 KEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRL 160
K L V V D + R+D++G + F ++E+ + P D WY+L
Sbjct: 81 KPGDVERRLSVEVWDWDRTSRNDFMGAMSFGVSEL-LKAPVDG-----WYKL 126
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKY-----GLKWVRTRTLVDNFNPKWNEQYTW 437
+ V + A+ L+PM D G +D Y K L +TRT+ NP WNE + +
Sbjct: 22 IHVTVGEARNLIPM---DPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVF 78
Query: 438 EV 439
+
Sbjct: 79 NL 80
>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium
pdb|1W16|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Absence Of Calcium
Length = 153
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 11/92 (11%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKS-------NPEWKQVFAFS 108
L V V KAR LP + VSG DPYV+V L Y K R +KK+ N + ++F F
Sbjct: 32 LTVVVLKARHLPKSDVSGLSDPYVKVNL--YHAKKRISKKKTHVKKCTPNAVFNELFVFD 89
Query: 109 --KEKIQSSVLEVFVRDREIVGRDDYIGKVVF 138
E ++ +E V D E R++ IG++V
Sbjct: 90 IPCESLEEISVEFLVLDSERGSRNEVIGRLVL 121
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 15/133 (11%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKG---------KTRHFEKKSNPEWKQVFA 106
L V+V DL + G+ DPYV++ L Y +T+ +K NP+W + F
Sbjct: 23 LRVKVVSGIDLAKKDIFGASDPYVKLSL--YVADENRELALVQTKTIKKTLNPKWNEEFY 80
Query: 107 FSKEKIQSSVL-EVFVRDREIVGRDDYIGKVVFDMNEVPTRVPP-DSPLAPQWYRLEDRR 164
F +L EVF +R + RDD++G+V ++ +PT P + P + + L R
Sbjct: 81 FRVNPSNHRLLFEVFDENR--LTRDDFLGQVDVPLSHLPTEDPTMERPYTFKDFLLRPRS 138
Query: 165 DDRKVKGEVMLAV 177
+VKG + L +
Sbjct: 139 HKSRVKGFLRLKM 151
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 15/103 (14%)
Query: 382 ILEVGILSAQGLLPMKTRDGRGTTDAYC-----VAKYG--LKWVRTRTLVDNFNPKWNEQ 434
IL V ++S + + +D G +D Y VA L V+T+T+ NPKWNE+
Sbjct: 22 ILRVKVVSG---IDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEE 78
Query: 435 YTWEVYDPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTL 477
+ + V + VFD L D +G+V + LS L
Sbjct: 79 FYFRVNPSNHRLLFEVFDENRL-----TRDDFLGQVDVPLSHL 116
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 57/112 (50%), Gaps = 14/112 (12%)
Query: 56 LYVRVEKARDL-PTNPVSGSCDPYVEVKL-----GNYKGKTRHFEKKSNPEWKQVFAFS- 108
L+V V A++L P +P +G DPYV++KL K KT+ NP+W + F F
Sbjct: 20 LHVTVRDAKNLIPXDP-NGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 78
Query: 109 KEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRL 160
K + L V + D + R+D+ G + F ++E+ + P A WY+L
Sbjct: 79 KPSDKDRRLSVEIWDWDRTTRNDFXGSLSFGVSEL-XKXP-----ASGWYKL 124
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKY-----GLKWVRTRTLVDNFNPKWNEQYTW 437
L V + A+ L+P D G +D Y K +T+T+ NP+WNE +T+
Sbjct: 20 LHVTVRDAKNLIPX---DPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTF 76
Query: 438 EV 439
++
Sbjct: 77 KL 78
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 46/99 (46%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSS 115
L V V +A +L +G +PY E+ +G+ TR + NP+W F + +
Sbjct: 389 LMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQD 448
Query: 116 VLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLA 154
VL + + DR+ DD++G+ + ++ T P+
Sbjct: 449 VLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMT 487
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 12/118 (10%)
Query: 368 QRPTARQLWKQP---IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLV 424
QR A Q Q IG L V ++ A L K G ++ YC G + TRT+
Sbjct: 371 QREKAYQARSQKTSGIGRLMVHVIEATELKACKPN---GKSNPYCEISMGSQSYTTRTIQ 427
Query: 425 DNFNPKWNEQYTWEVYDPCT-VITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADR 481
D NPKWN + + D V+ L +FD PD +G+ I ++ + ++
Sbjct: 428 DTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFS-----PDDFLGRTEIPVAKIRTEQ 480
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 194 DAATVEGEGVFNIRSKVYVSPKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKT 253
D + E + RS+ + + L V+VIEA +++ + + E +G+Q T
Sbjct: 366 DTEKKQREKAYQARSQK--TSGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTT 423
Query: 254 KLCPTRTTNPLWNEDLIFVAAEPFEEQLVLTVENKVTPAKDEPLGRLRL 302
+ T NP WN + F + +++ L LT+ ++ + D+ LGR +
Sbjct: 424 RTIQD-TLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEI 471
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 10/128 (7%)
Query: 58 VRVEKARDLPTNPVSGSCDPYVEVKLGNYKG------KTRHFEKKSNPEWKQVFAFSKEK 111
VRV L + G+ DPYV V L + +T+ +K NP+W + F
Sbjct: 24 VRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHP 83
Query: 112 IQSSVL-EVFVRDREIVGRDDYIGKVVFDMNEVPTRVPP-DSPLAPQWYRLEDRRDDRKV 169
Q +L EVF +R + RDD++G+V + +PT P + P + + L R +V
Sbjct: 84 QQHRLLFEVFDENR--LTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRV 141
Query: 170 KGEVMLAV 177
KG + L +
Sbjct: 142 KGYLRLKM 149
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 21/142 (14%)
Query: 382 ILEVGILSAQGLLPMKTRDGRGTTDAYC-VAKYG-----LKWVRTRTLVDNFNPKWNEQY 435
I+ V +++ GL +D G +D Y V Y L V+T+T+ + NPKWNE+
Sbjct: 21 IVRVRVIAGIGL---AKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEI 77
Query: 436 TWEVYDPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEA-----DRIYTHSYPLL 490
+ V+ + VFD L D +G+V + L L +R YT +
Sbjct: 78 LFRVHPQQHRLLFEVFDENRLTR-----DDFLGQVDVPLYPLPTENPRLERPYT--FKDF 130
Query: 491 VLNPSGVKKMGELQLAVRFTCL 512
VL+P K + L ++ T L
Sbjct: 131 VLHPRSHKSRVKGYLRLKMTYL 152
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 76 DPYVEVKLG---NYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDY 132
DPYVE+ + + + +TRHF NP W + F F + Q +VLE+ + D V D+
Sbjct: 28 DPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYV-MDET 86
Query: 133 IGKVVF 138
+G F
Sbjct: 87 LGTATF 92
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 18/146 (12%)
Query: 33 GAGGWISSERATSTYDL--VEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKT 90
G GG I + + L V L V + +A++L V G DPYV++ L +
Sbjct: 2 GGGGGILEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRL 61
Query: 91 RHFEKKS-----NPEWKQVFAFSK--EKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEV 143
+ + NP + + F+F E+IQ + V V D + +G++D IGKV N
Sbjct: 62 KKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST 121
Query: 144 PTRV--------PPDSPLAPQWYRLE 161
+ P P+A QW+ L+
Sbjct: 122 GAELRHWSDMLANPRRPIA-QWHTLQ 146
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 76 DPYVEVKLG---NYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDY 132
DPYVE+ + + + +TRHF NP W + F F + Q +VLE+ + D V D+
Sbjct: 43 DPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYV-MDET 101
Query: 133 IGKVVF 138
+G F
Sbjct: 102 LGTATF 107
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 76 DPYVEVKLG---NYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDY 132
DPYVE+ + + + +TRHF NP W + F F + Q +VLE+ + D V D+
Sbjct: 43 DPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYV-MDET 101
Query: 133 IGKVVFDMNEV 143
+G F ++ +
Sbjct: 102 LGTATFTVSSM 112
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 116/291 (39%), Gaps = 62/291 (21%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKL---GNYKGKTRHFEKKSNPEWKQVFAFS--KE 110
L V + +A +LP + G+ DPYV+V L K +T+ K NP + + F F
Sbjct: 21 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 80
Query: 111 KIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVK 170
++ L + V D + + D IG+ MN V + +W L+ + + K
Sbjct: 81 ELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDF-----GHVTEEWRDLQSAEKEEQEK 135
Query: 171 GEVMLAVWIGTQADEAFPEAWHSDAATVEGEGVFNIRSKVYVSPKLWYLRVNVIEAQDVE 230
G+ F++R YV P L V ++EA++++
Sbjct: 136 ----------------------------LGDICFSLR---YV-PTAGKLTVVILEAKNLK 163
Query: 231 PLDKSQLPQAFVEAQVGNQ----VLKTKLCPTRTTNPLWNEDLIFVAAEPFEE----QLV 282
+D L +V+ + K T NP +NE F PFE+ Q+V
Sbjct: 164 KMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEV--PFEQIQKVQVV 221
Query: 283 LTVENKVTPAKDEPLGRLRLSLNVIERRLDH---------RPVHSKWFNLE 324
+TV + K++ +G++ + N L H RP+ ++W L+
Sbjct: 222 VTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPI-AQWHTLQ 271
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 16/121 (13%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKS-----NPEWKQVFAFSK- 109
L V + +A++L V G DPYV++ L + + + NP + + F+F
Sbjct: 19 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 78
Query: 110 -EKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRV--------PPDSPLAPQWYRL 160
E+IQ + V V D + +G++D IGKV N + P P+A QW+ L
Sbjct: 79 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA-QWHTL 137
Query: 161 E 161
+
Sbjct: 138 Q 138
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 16/121 (13%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKS-----NPEWKQVFAFSK- 109
L V + +A++L V G DPYV++ L + + + NP + + F+F
Sbjct: 20 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 79
Query: 110 -EKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRV--------PPDSPLAPQWYRL 160
E+IQ + V V D + +G++D IGKV N + P P+A QW+ L
Sbjct: 80 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA-QWHTL 138
Query: 161 E 161
+
Sbjct: 139 Q 139
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 10/128 (7%)
Query: 58 VRVEKARDLPTNPVSGSCDPYVEVKLGNYKG------KTRHFEKKSNPEWKQVFAFSKEK 111
V+V L + G+ DPYV V L + +T+ +K NP+W + F
Sbjct: 12 VKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLP 71
Query: 112 IQSSVL-EVFVRDREIVGRDDYIGKVVFDMNEVPTRVPP-DSPLAPQWYRLEDRRDDRKV 169
+ +L EVF +R + RDD++G+V + +PT P + P + + L R +V
Sbjct: 72 QRHRILFEVFDENR--LTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRV 129
Query: 170 KGEVMLAV 177
KG + L +
Sbjct: 130 KGYLRLKM 137
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 21/142 (14%)
Query: 382 ILEVGILSAQGLLPMKTRDGRGTTDAYC-VAKYG-----LKWVRTRTLVDNFNPKWNEQY 435
++ V +++ GL +D G +D Y V Y L V+T+T+ + NPKWNE+
Sbjct: 9 VVRVKVIAGIGL---AKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEI 65
Query: 436 TWEVYDPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEA-----DRIYTHSYPLL 490
+ V I VFD L D +G+V + L L +R YT +
Sbjct: 66 LFRVLPQRHRILFEVFDENRLTR-----DDFLGQVDVPLYPLPTENPRMERPYT--FKDF 118
Query: 491 VLNPSGVKKMGELQLAVRFTCL 512
VL+P K + L ++ T L
Sbjct: 119 VLHPRSHKSRVKGYLRLKMTYL 140
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 59/116 (50%), Gaps = 16/116 (13%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEV-----KLGNYKGKTRHFEKKSNPEWKQVFAFS-- 108
L V + A+DLP+ +PYV++ + K +T+ +K P+W Q F +S
Sbjct: 20 LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPV 79
Query: 109 -KEKIQSSVLEVFVRDREIVGRD--DYIGKVVFDMNEVPTRVPPDSPLAPQWYRLE 161
+ + + +LE+ + D+ V + +++G+++ E+ T + D P WY+L+
Sbjct: 80 HRREFRERMLEITLWDQARVREEESEFLGEILI---ELETALLDDE---PHWYKLQ 129
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 59/116 (50%), Gaps = 16/116 (13%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEV-----KLGNYKGKTRHFEKKSNPEWKQVFAFS-- 108
L V + A+DLP+ +PYV++ + K +T+ +K P+W Q F +S
Sbjct: 23 LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPV 82
Query: 109 -KEKIQSSVLEVFVRDREIVGRD--DYIGKVVFDMNEVPTRVPPDSPLAPQWYRLE 161
+ + + +LE+ + D+ V + +++G+++ E+ T + D P WY+L+
Sbjct: 83 HRREFRERMLEITLWDQARVREEESEFLGEILI---ELETALLDDE---PHWYKLQ 132
>pdb|2DMH|A Chain A, Solution Structure Of The First C2 Domain Of Human
Myoferlin
Length = 140
Score = 37.4 bits (85), Expect = 0.037, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQ-- 113
L V VE A ++P G DP V V + K KT+ + + NP W ++ F I
Sbjct: 9 LRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLD 67
Query: 114 -SSVLEVFVRDREIVGRDDYIGKVVFDMNEV 143
SS L + V+D E +G++ IG + ++
Sbjct: 68 FSSSLGIIVKDFETIGQNKLIGTATVALKDL 98
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 35.0 bits (79), Expect = 0.18, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 38/86 (44%), Gaps = 17/86 (19%)
Query: 360 ESTMYISDQRPTA-----RQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG 414
E+ Y SDQ T L+ Q L+ I+ A+GL PM D G D Y K
Sbjct: 3 EANSYDSDQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPM---DSNGLADPY--VKLH 57
Query: 415 L-------KWVRTRTLVDNFNPKWNE 433
L +RT+TL + NP WNE
Sbjct: 58 LLPGASKSNKLRTKTLRNTRNPVWNE 83
Score = 33.5 bits (75), Expect = 0.52, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 219 LRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTR----TTNPLWNEDLIF--V 272
L+ +I A+ ++P+D + L +V+ + K+ T+ T NP+WNE L + +
Sbjct: 31 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 90
Query: 273 AAEPFEEQ-LVLTVENKVTPAKDEPLGRLRLSL 304
E + + L ++V ++ +E +G R SL
Sbjct: 91 TEEDMQRKTLRISVCDEDKFGHNEFIGETRFSL 123
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKL---GNYKGKTRHFEKKSNPEWKQVFAFS--KE 110
L V + +A +LP + G+ DPYV+V L K +T+ K NP + + F F
Sbjct: 44 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 103
Query: 111 KIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEV 143
++ L + V D + + D IG+ MN V
Sbjct: 104 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 136
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKL---GNYKGKTRHFEKKSNPEWKQVFAFS--KE 110
L V + +A +LP + G+ DPYV+V L K +T+ K NP + + F F
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 111 KIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEV 143
++ L + V D + + D IG+ MN V
Sbjct: 96 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 128
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKL---GNYKGKTRHFEKKSNPEWKQVFAFS--KE 110
L V + +A +LP + G+ DPYV+V L K +T+ K NP + + F F
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 111 KIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEV 143
++ L + V D + + D IG+ MN V
Sbjct: 96 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 128
>pdb|3A04|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Hyperthermophilic Archaeon, Aeropyrum Pernix K1
pdb|3A05|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Hyperthermophilic Archaeon, Aeropyrum Pernix K1 Complex
With Tryptophan
Length = 372
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 19/93 (20%)
Query: 528 KMHYLHPFTVNQLDSLRYQAMNI-VAV---------RLGRAEPPLRKEVVEYMLDV---- 573
K H+ H TV+QL L+ + VA+ R+GR E +R V EY+ ++
Sbjct: 82 KFHFGHKLTVDQLIYLQKNGFKVFVAIADAEAFAVRRIGREEA-VRIAVEEYIANMIALG 140
Query: 574 ----DSHMWSMRRSKANFFRIVSLFSGAISMSK 602
D+ + +FR++ LFSG ++ ++
Sbjct: 141 LDPKDTEFYFQTNRGTPYFRLIQLFSGKVTAAE 173
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKL---GNYKGKTRHFEKKSNPEWKQVFAFS--KE 110
L V + +A +LP + G+ DPYV+V L K +T+ K NP + + F F
Sbjct: 19 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 78
Query: 111 KIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEV 143
++ L + V D + + D IG+ MN V
Sbjct: 79 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 111
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 33.5 bits (75), Expect = 0.51, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 38/86 (44%), Gaps = 17/86 (19%)
Query: 360 ESTMYISDQRPTA-----RQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG 414
E+ Y SD+ T L+ Q L+ I+ A+GL PM D G D Y K
Sbjct: 1 EANSYDSDEATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPM---DSNGLADPY--VKLH 55
Query: 415 L-------KWVRTRTLVDNFNPKWNE 433
L +RT+TL + NP WNE
Sbjct: 56 LLPGASKSNKLRTKTLRNTRNPVWNE 81
Score = 33.5 bits (75), Expect = 0.53, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 219 LRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTR----TTNPLWNEDLIF--V 272
L+ +I A+ ++P+D + L +V+ + K+ T+ T NP+WNE L + +
Sbjct: 29 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 88
Query: 273 AAEPFEEQ-LVLTVENKVTPAKDEPLGRLRLSL 304
E + + L ++V ++ +E +G R SL
Sbjct: 89 TEEDMQRKTLRISVCDEDKFGHNEFIGETRFSL 121
>pdb|1PSZ|A Chain A, Pneumococcal Surface Antigen Psaa
pdb|3ZTT|A Chain A, Crystal Structure Of Pneumococcal Surface Antigen Psaa
With Manganese
pdb|3ZTT|B Chain B, Crystal Structure Of Pneumococcal Surface Antigen Psaa
With Manganese
pdb|3ZTT|C Chain C, Crystal Structure Of Pneumococcal Surface Antigen Psaa
With Manganese
pdb|3ZTT|D Chain D, Crystal Structure Of Pneumococcal Surface Antigen Psaa
With Manganese
Length = 303
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 198 VEGEGVFNIRSKVYVSPKLWYLRVNVIEAQD-------VEPLDKSQLPQAFVEAQVGNQV 250
V EG F SK Y P + +N E VE L ++++P FVE+ V ++
Sbjct: 196 VTSEGAFKYFSKAYGVPSAYIWEINTEEEGTPEQIKTLVEKLRQTKVPSLFVESSVDDRP 255
Query: 251 LKT 253
+KT
Sbjct: 256 MKT 258
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 219 LRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTRTTNPLWNEDLIFVAAEPFE 278
L V ++ A+ +E D +V+ Q K+ + T P WNE IF +E
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71
Query: 279 EQLVLTVENKVTPAKDEPLGRLRLSL 304
E L + +K +D+ +G + L
Sbjct: 72 E-LKAKIFDKDVGTEDDAVGEATIPL 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,457,126
Number of Sequences: 62578
Number of extensions: 1043612
Number of successful extensions: 2311
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 2226
Number of HSP's gapped (non-prelim): 85
length of query: 789
length of database: 14,973,337
effective HSP length: 107
effective length of query: 682
effective length of database: 8,277,491
effective search space: 5645248862
effective search space used: 5645248862
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)