Query 003882
Match_columns 789
No_of_seqs 497 out of 3443
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 13:42:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003882.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003882hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08372 PRT_C: Plant phosphor 100.0 4.5E-41 9.8E-46 305.5 14.7 156 634-789 1-156 (156)
2 KOG1028 Ca2+-dependent phospho 100.0 4E-30 8.6E-35 279.6 24.6 228 38-306 153-393 (421)
3 COG5038 Ca2+-dependent lipid-b 100.0 3.7E-27 8.1E-32 266.6 35.1 399 49-514 431-844 (1227)
4 KOG1028 Ca2+-dependent phospho 99.9 1.7E-25 3.6E-30 243.5 25.9 215 216-476 166-393 (421)
5 COG5038 Ca2+-dependent lipid-b 99.9 2.6E-22 5.7E-27 227.6 32.7 408 49-511 706-1162(1227)
6 KOG2059 Ras GTPase-activating 99.9 3.2E-23 7E-28 222.7 17.0 251 54-352 5-276 (800)
7 cd04016 C2_Tollip C2 domain pr 99.9 1.3E-21 2.8E-26 175.5 15.5 118 54-179 2-121 (121)
8 cd04016 C2_Tollip C2 domain pr 99.9 1.2E-21 2.5E-26 175.8 14.7 119 380-509 1-121 (121)
9 cd08379 C2D_MCTP_PRT_plant C2 99.9 1.2E-21 2.7E-26 176.7 14.7 121 382-505 1-125 (126)
10 cd04019 C2C_MCTP_PRT_plant C2 99.9 2.2E-21 4.7E-26 181.9 16.9 149 219-370 2-150 (150)
11 KOG2059 Ras GTPase-activating 99.9 2.9E-21 6.3E-26 207.8 16.8 249 218-513 6-279 (800)
12 cd08677 C2A_Synaptotagmin-13 C 99.9 4.1E-21 8.8E-26 168.9 12.0 111 40-160 2-118 (118)
13 cd08682 C2_Rab11-FIP_classI C2 99.9 1.1E-20 2.4E-25 173.3 14.6 119 56-177 1-125 (126)
14 cd08378 C2B_MCTP_PRT_plant C2 99.8 1.3E-20 2.9E-25 170.6 14.7 120 55-180 1-120 (121)
15 cd08381 C2B_PI3K_class_II C2 d 99.8 1.2E-20 2.7E-25 171.1 13.1 112 39-160 2-121 (122)
16 cd08682 C2_Rab11-FIP_classI C2 99.8 1.7E-20 3.8E-25 171.9 13.3 117 383-507 1-125 (126)
17 cd04022 C2A_MCTP_PRT_plant C2 99.8 3.8E-20 8.2E-25 169.9 14.8 121 56-180 2-126 (127)
18 cd04028 C2B_RIM1alpha C2 domai 99.8 4.4E-20 9.4E-25 170.6 14.4 120 36-165 15-141 (146)
19 cd08393 C2A_SLP-1_2 C2 domain 99.8 3.3E-20 7.1E-25 169.3 13.2 116 39-161 2-125 (125)
20 PF11696 DUF3292: Protein of u 99.8 3.1E-20 6.8E-25 202.5 15.2 216 570-787 80-391 (642)
21 cd04042 C2A_MCTP_PRT C2 domain 99.8 7.8E-20 1.7E-24 166.4 15.4 119 55-180 1-120 (121)
22 cd08379 C2D_MCTP_PRT_plant C2 99.8 6.1E-20 1.3E-24 165.7 14.1 114 56-175 2-125 (126)
23 cd04015 C2_plant_PLD C2 domain 99.8 7.7E-20 1.7E-24 173.4 15.2 123 381-509 7-157 (158)
24 KOG1030 Predicted Ca2+-depende 99.8 2.1E-20 4.6E-25 169.9 10.7 116 379-506 4-119 (168)
25 cd08392 C2A_SLP-3 C2 domain fi 99.8 6.3E-20 1.4E-24 167.4 13.1 119 39-161 2-128 (128)
26 cd04042 C2A_MCTP_PRT C2 domain 99.8 1.5E-19 3.2E-24 164.5 15.1 120 382-511 1-121 (121)
27 cd04019 C2C_MCTP_PRT_plant C2 99.8 2E-19 4.4E-24 168.6 15.9 126 55-181 1-133 (150)
28 cd04029 C2A_SLP-4_5 C2 domain 99.8 9.6E-20 2.1E-24 166.0 13.2 116 39-161 2-125 (125)
29 cd08681 C2_fungal_Inn1p-like C 99.8 1.4E-19 3E-24 164.1 13.5 117 54-179 1-118 (118)
30 KOG1030 Predicted Ca2+-depende 99.8 6.7E-20 1.5E-24 166.7 10.6 96 52-148 4-99 (168)
31 cd08375 C2_Intersectin C2 doma 99.8 3.6E-19 7.7E-24 164.4 15.5 123 52-179 13-135 (136)
32 cd08376 C2B_MCTP_PRT C2 domain 99.8 5.4E-19 1.2E-23 159.7 15.2 115 55-180 1-115 (116)
33 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 5.5E-19 1.2E-23 160.0 15.1 117 56-178 2-120 (121)
34 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 5.1E-19 1.1E-23 160.2 14.6 119 383-509 2-121 (121)
35 PF04842 DUF639: Plant protein 99.8 2.6E-19 5.7E-24 195.6 14.6 181 578-781 480-664 (683)
36 cd08387 C2A_Synaptotagmin-8 C2 99.8 5E-19 1.1E-23 161.9 13.1 116 39-161 3-123 (124)
37 cd08385 C2A_Synaptotagmin-1-5- 99.8 5.6E-19 1.2E-23 161.6 13.3 116 39-161 3-123 (124)
38 cd08680 C2_Kibra C2 domain fou 99.8 4.4E-19 9.5E-24 160.2 12.3 114 41-160 3-124 (124)
39 cd08681 C2_fungal_Inn1p-like C 99.8 5.9E-19 1.3E-23 160.0 13.0 116 381-509 1-118 (118)
40 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 1.1E-18 2.4E-23 161.9 15.0 123 56-179 2-132 (133)
41 cd08377 C2C_MCTP_PRT C2 domain 99.8 2.1E-18 4.5E-23 156.8 16.2 118 54-179 1-118 (119)
42 cd08389 C2A_Synaptotagmin-14_1 99.8 6.3E-19 1.4E-23 160.5 12.7 116 39-162 3-124 (124)
43 cd08395 C2C_Munc13 C2 domain t 99.8 6.1E-19 1.3E-23 157.8 12.1 102 56-163 2-113 (120)
44 cd08375 C2_Intersectin C2 doma 99.8 1.7E-18 3.7E-23 159.9 15.3 120 377-510 11-136 (136)
45 cd08400 C2_Ras_p21A1 C2 domain 99.8 1.9E-18 4E-23 158.0 15.3 119 381-511 4-124 (126)
46 cd04024 C2A_Synaptotagmin-like 99.8 1.5E-18 3.2E-23 160.0 14.8 123 54-178 1-127 (128)
47 cd08400 C2_Ras_p21A1 C2 domain 99.8 3E-18 6.5E-23 156.6 16.5 119 53-180 3-123 (126)
48 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 2.6E-18 5.7E-23 156.9 15.7 118 55-177 1-122 (123)
49 cd08388 C2A_Synaptotagmin-4-11 99.8 1E-18 2.2E-23 160.0 12.7 119 39-162 3-128 (128)
50 cd04030 C2C_KIAA1228 C2 domain 99.8 1.4E-18 2.9E-23 159.9 13.6 116 39-161 3-127 (127)
51 cd04031 C2A_RIM1alpha C2 domai 99.8 1.5E-18 3.3E-23 159.2 13.4 115 39-161 3-125 (125)
52 cd04036 C2_cPLA2 C2 domain pre 99.8 2E-18 4.4E-23 156.5 14.0 113 56-179 2-117 (119)
53 KOG1326 Membrane-associated pr 99.8 3.2E-19 6.9E-24 198.8 10.0 405 42-476 195-703 (1105)
54 cd08678 C2_C21orf25-like C2 do 99.8 3E-18 6.6E-23 157.0 14.7 120 383-512 1-122 (126)
55 cd08678 C2_C21orf25-like C2 do 99.8 3.9E-18 8.4E-23 156.3 15.1 118 56-181 1-121 (126)
56 cd08376 C2B_MCTP_PRT C2 domain 99.8 3.4E-18 7.3E-23 154.5 14.5 113 382-509 1-114 (116)
57 cd04010 C2B_RasA3 C2 domain se 99.8 1.8E-18 4E-23 161.0 12.9 103 56-165 2-125 (148)
58 cd08386 C2A_Synaptotagmin-7 C2 99.8 2.1E-18 4.6E-23 158.1 13.1 117 39-162 3-125 (125)
59 cd08685 C2_RGS-like C2 domain 99.8 1.5E-18 3.3E-23 156.4 11.8 111 40-160 2-119 (119)
60 cd08377 C2C_MCTP_PRT C2 domain 99.8 5.8E-18 1.3E-22 153.8 15.2 118 381-509 1-118 (119)
61 cd08521 C2A_SLP C2 domain firs 99.8 2.5E-18 5.4E-23 157.2 12.8 115 39-160 1-123 (123)
62 cd04017 C2D_Ferlin C2 domain f 99.8 7.2E-18 1.6E-22 156.3 15.8 123 54-181 1-133 (135)
63 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 6.5E-18 1.4E-22 153.4 15.1 118 56-178 2-120 (121)
64 cd04024 C2A_Synaptotagmin-like 99.8 4.4E-18 9.6E-23 156.8 14.1 123 381-509 1-128 (128)
65 cd04022 C2A_MCTP_PRT_plant C2 99.8 4.1E-18 8.9E-23 156.4 13.7 120 382-509 1-125 (127)
66 cd08391 C2A_C2C_Synaptotagmin_ 99.8 6.1E-18 1.3E-22 154.2 14.6 114 54-178 1-120 (121)
67 cd08394 C2A_Munc13 C2 domain f 99.8 4.4E-18 9.6E-23 151.1 13.2 102 53-163 1-102 (127)
68 cd08391 C2A_C2C_Synaptotagmin_ 99.8 5.4E-18 1.2E-22 154.6 13.8 117 381-509 1-121 (121)
69 cd08381 C2B_PI3K_class_II C2 d 99.8 5.3E-18 1.2E-22 153.8 13.5 100 381-489 13-121 (122)
70 cd04050 C2B_Synaptotagmin-like 99.8 4.7E-18 1E-22 150.3 12.2 102 56-163 2-103 (105)
71 cd04015 C2_plant_PLD C2 domain 99.8 1.4E-17 3E-22 158.0 16.1 119 54-179 7-157 (158)
72 cd04029 C2A_SLP-4_5 C2 domain 99.8 8.9E-18 1.9E-22 153.1 13.9 103 380-489 14-124 (125)
73 cd08390 C2A_Synaptotagmin-15-1 99.8 7.2E-18 1.6E-22 154.1 13.3 117 39-162 1-123 (123)
74 cd04011 C2B_Ferlin C2 domain s 99.8 6.3E-18 1.4E-22 151.2 12.3 106 52-163 2-111 (111)
75 cd04028 C2B_RIM1alpha C2 domai 99.8 1.3E-17 2.8E-22 154.2 14.6 105 381-492 29-139 (146)
76 cd08378 C2B_MCTP_PRT_plant C2 99.8 6.5E-18 1.4E-22 153.0 12.3 113 382-509 1-119 (121)
77 cd04027 C2B_Munc13 C2 domain s 99.8 1.4E-17 3.1E-22 152.6 14.7 115 55-177 2-127 (127)
78 cd08677 C2A_Synaptotagmin-13 C 99.8 5.6E-18 1.2E-22 149.1 11.3 102 377-489 10-118 (118)
79 cd08393 C2A_SLP-1_2 C2 domain 99.8 8.7E-18 1.9E-22 153.3 12.8 102 381-489 15-124 (125)
80 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 1.3E-17 2.9E-22 152.2 13.2 118 382-507 1-122 (123)
81 cd04044 C2A_Tricalbin-like C2 99.7 1.4E-17 3.1E-22 152.5 13.1 121 380-511 1-124 (124)
82 cd08406 C2B_Synaptotagmin-12 C 99.7 3.8E-18 8.2E-23 157.0 9.0 117 39-164 2-125 (136)
83 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 1.1E-17 2.4E-22 159.1 12.3 120 39-163 2-139 (162)
84 cd04046 C2_Calpain C2 domain p 99.7 5.5E-17 1.2E-21 148.5 16.4 119 53-180 2-122 (126)
85 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 2.2E-17 4.7E-22 153.2 13.7 119 382-509 1-132 (133)
86 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 2.9E-17 6.3E-22 149.1 14.2 117 383-508 2-120 (121)
87 cd04036 C2_cPLA2 C2 domain pre 99.7 2.2E-17 4.8E-22 149.8 13.4 113 383-510 2-118 (119)
88 cd08688 C2_KIAA0528-like C2 do 99.7 1.5E-17 3.3E-22 148.3 12.0 105 56-162 1-109 (110)
89 cd04046 C2_Calpain C2 domain p 99.7 5.6E-17 1.2E-21 148.4 16.0 120 380-510 2-122 (126)
90 cd08382 C2_Smurf-like C2 domai 99.7 3E-17 6.5E-22 149.5 14.2 116 56-177 2-122 (123)
91 cd04039 C2_PSD C2 domain prese 99.7 1.9E-17 4.2E-22 146.3 12.3 97 54-150 1-102 (108)
92 cd08373 C2A_Ferlin C2 domain f 99.7 4.7E-17 1E-21 149.5 15.0 116 60-183 2-119 (127)
93 cd04041 C2A_fungal C2 domain f 99.7 1.5E-17 3.2E-22 148.6 10.7 101 54-162 1-108 (111)
94 cd08395 C2C_Munc13 C2 domain t 99.7 2.8E-17 6.1E-22 147.1 12.0 100 382-490 1-111 (120)
95 cd08407 C2B_Synaptotagmin-13 C 99.7 8.9E-18 1.9E-22 154.3 8.6 102 39-142 2-112 (138)
96 cd08394 C2A_Munc13 C2 domain f 99.7 4E-17 8.6E-22 145.0 12.1 98 381-491 2-101 (127)
97 cd04014 C2_PKC_epsilon C2 doma 99.7 1.3E-16 2.8E-21 147.5 16.0 114 54-181 4-130 (132)
98 cd08387 C2A_Synaptotagmin-8 C2 99.7 6.4E-17 1.4E-21 147.9 13.6 104 379-490 14-123 (124)
99 cd04018 C2C_Ferlin C2 domain t 99.7 7.5E-18 1.6E-22 157.1 7.5 95 382-481 1-108 (151)
100 cd04051 C2_SRC2_like C2 domain 99.7 4.2E-17 9.1E-22 149.4 12.3 119 55-175 1-125 (125)
101 cd04039 C2_PSD C2 domain prese 99.7 5.2E-17 1.1E-21 143.6 12.0 96 381-481 1-99 (108)
102 cd04014 C2_PKC_epsilon C2 doma 99.7 1.2E-16 2.5E-21 147.9 14.8 118 380-511 3-130 (132)
103 cd04044 C2A_Tricalbin-like C2 99.7 1E-16 2.2E-21 146.8 14.0 120 53-180 1-123 (124)
104 cd08404 C2B_Synaptotagmin-4 C2 99.7 2E-17 4.4E-22 153.7 9.4 118 39-165 2-126 (136)
105 cd04043 C2_Munc13_fungal C2 do 99.7 1.8E-16 3.8E-21 145.6 15.5 120 54-182 1-123 (126)
106 cd08685 C2_RGS-like C2 domain 99.7 6.6E-17 1.4E-21 145.7 12.1 101 381-489 12-119 (119)
107 cd08385 C2A_Synaptotagmin-1-5- 99.7 1.3E-16 2.7E-21 146.0 14.0 103 380-490 15-123 (124)
108 cd08384 C2B_Rabphilin_Doc2 C2 99.7 2.9E-17 6.2E-22 152.3 9.8 116 41-165 2-124 (133)
109 cd04013 C2_SynGAP_like C2 doma 99.7 1.8E-16 4E-21 145.9 14.9 123 381-512 11-141 (146)
110 cd04018 C2C_Ferlin C2 domain t 99.7 1.1E-16 2.4E-21 149.2 13.4 110 56-165 2-128 (151)
111 cd04027 C2B_Munc13 C2 domain s 99.7 1.9E-16 4.2E-21 145.1 14.5 120 382-507 2-127 (127)
112 cd04010 C2B_RasA3 C2 domain se 99.7 7.1E-17 1.5E-21 150.4 11.6 102 382-493 1-124 (148)
113 cd08688 C2_KIAA0528-like C2 do 99.7 5.6E-17 1.2E-21 144.7 10.4 102 383-491 1-109 (110)
114 cd04031 C2A_RIM1alpha C2 domai 99.7 1.7E-16 3.7E-21 145.5 13.6 101 381-490 16-125 (125)
115 cd08408 C2B_Synaptotagmin-14_1 99.7 2.9E-17 6.2E-22 152.0 8.4 119 39-165 2-128 (138)
116 cd08373 C2A_Ferlin C2 domain f 99.7 2.5E-16 5.4E-21 144.6 14.4 115 387-513 2-119 (127)
117 cd04009 C2B_Munc13-like C2 dom 99.7 1.2E-16 2.7E-21 147.7 12.1 106 39-146 3-119 (133)
118 cd08405 C2B_Synaptotagmin-7 C2 99.7 4.7E-17 1E-21 151.3 9.3 118 39-165 2-126 (136)
119 cd08392 C2A_SLP-3 C2 domain fi 99.7 2.9E-16 6.4E-21 143.2 14.0 106 217-324 15-128 (128)
120 cd04030 C2C_KIAA1228 C2 domain 99.7 2.7E-16 5.8E-21 144.6 13.5 104 380-489 15-126 (127)
121 cd08388 C2A_Synaptotagmin-4-11 99.7 4.3E-16 9.3E-21 142.6 14.6 102 381-489 16-126 (128)
122 cd08409 C2B_Synaptotagmin-15 C 99.7 5.7E-17 1.2E-21 150.3 8.7 118 39-164 2-126 (137)
123 KOG1326 Membrane-associated pr 99.7 7.6E-16 1.6E-20 172.2 19.0 444 54-508 363-1020(1105)
124 cd08410 C2B_Synaptotagmin-17 C 99.7 7.2E-17 1.6E-21 149.4 9.1 119 39-165 1-126 (135)
125 cd04017 C2D_Ferlin C2 domain f 99.7 5.7E-16 1.2E-20 143.6 14.8 118 382-511 2-133 (135)
126 cd08691 C2_NEDL1-like C2 domai 99.7 7E-16 1.5E-20 141.7 15.2 118 55-177 2-136 (137)
127 cd08676 C2A_Munc13-like C2 dom 99.7 2.5E-16 5.5E-21 147.0 12.4 100 51-160 25-153 (153)
128 cd04032 C2_Perforin C2 domain 99.7 4.2E-16 9E-21 141.0 13.4 94 52-146 26-120 (127)
129 cd08675 C2B_RasGAP C2 domain s 99.7 2.2E-16 4.8E-21 146.2 11.9 103 56-164 1-122 (137)
130 cd08386 C2A_Synaptotagmin-7 C2 99.7 4.8E-16 1E-20 142.5 14.0 103 380-490 15-124 (125)
131 cd08680 C2_Kibra C2 domain fou 99.7 2.1E-16 4.6E-21 142.8 11.4 105 377-489 10-124 (124)
132 cd08402 C2B_Synaptotagmin-1 C2 99.7 8.1E-17 1.8E-21 149.7 8.9 117 39-164 2-125 (136)
133 cd04049 C2_putative_Elicitor-r 99.7 3.6E-16 7.9E-21 142.9 12.8 106 54-164 1-110 (124)
134 cd08382 C2_Smurf-like C2 domai 99.7 4.9E-16 1.1E-20 141.5 13.3 118 383-507 2-122 (123)
135 cd08521 C2A_SLP C2 domain firs 99.7 5.8E-16 1.3E-20 141.5 13.9 103 380-489 13-123 (123)
136 cd04026 C2_PKC_alpha_gamma C2 99.7 3.9E-16 8.5E-21 144.2 12.9 116 39-164 2-123 (131)
137 PLN03008 Phospholipase D delta 99.7 2.6E-16 5.7E-21 177.3 13.6 127 381-513 14-180 (868)
138 cd00276 C2B_Synaptotagmin C2 d 99.7 1.1E-16 2.3E-21 148.9 8.8 119 39-166 1-126 (134)
139 cd08389 C2A_Synaptotagmin-14_1 99.7 7.1E-16 1.5E-20 140.4 13.8 101 381-490 16-123 (124)
140 cd08690 C2_Freud-1 C2 domain f 99.7 1.2E-15 2.6E-20 142.1 15.3 119 56-181 4-138 (155)
141 cd04038 C2_ArfGAP C2 domain pr 99.7 4.1E-16 8.9E-21 144.9 12.3 92 54-147 2-93 (145)
142 cd04050 C2B_Synaptotagmin-like 99.7 5.2E-16 1.1E-20 137.2 12.4 102 219-326 2-103 (105)
143 cd04045 C2C_Tricalbin-like C2 99.7 6.1E-16 1.3E-20 139.9 13.1 104 54-164 1-105 (120)
144 cd08403 C2B_Synaptotagmin-3-5- 99.7 1.7E-16 3.6E-21 147.2 9.6 118 39-165 1-125 (134)
145 cd04041 C2A_fungal C2 domain f 99.7 2.8E-16 6E-21 140.4 10.4 99 381-490 1-107 (111)
146 cd04043 C2_Munc13_fungal C2 do 99.7 1.4E-15 2.9E-20 139.7 14.4 113 382-510 2-121 (126)
147 cd04040 C2D_Tricalbin-like C2 99.7 8.7E-16 1.9E-20 138.5 12.9 112 56-174 1-113 (115)
148 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 9.1E-16 2E-20 146.0 13.6 128 342-490 1-137 (162)
149 KOG1013 Synaptic vesicle prote 99.7 4.9E-17 1.1E-21 161.5 4.6 229 38-305 79-327 (362)
150 cd08690 C2_Freud-1 C2 domain f 99.7 1.9E-15 4.1E-20 140.8 14.8 120 381-510 4-137 (155)
151 cd04011 C2B_Ferlin C2 domain s 99.7 8.9E-16 1.9E-20 137.3 12.1 107 214-326 1-111 (111)
152 cd04021 C2_E3_ubiquitin_ligase 99.7 2E-15 4.3E-20 137.8 14.4 121 54-177 2-124 (125)
153 cd08390 C2A_Synaptotagmin-15-1 99.7 1.7E-15 3.6E-20 138.5 13.9 104 380-490 13-122 (123)
154 cd04035 C2A_Rabphilin_Doc2 C2 99.7 9.7E-16 2.1E-20 139.9 12.3 108 39-149 2-117 (123)
155 cd08692 C2B_Tac2-N C2 domain s 99.7 1E-15 2.3E-20 138.2 12.2 101 41-143 3-110 (135)
156 cd08383 C2A_RasGAP C2 domain ( 99.6 2.1E-15 4.5E-20 136.5 14.1 113 56-179 2-117 (117)
157 cd04032 C2_Perforin C2 domain 99.6 1.1E-15 2.3E-20 138.3 12.0 95 377-480 24-120 (127)
158 cd04038 C2_ArfGAP C2 domain pr 99.6 9.9E-16 2.1E-20 142.3 11.7 92 380-480 1-92 (145)
159 cd04051 C2_SRC2_like C2 domain 99.6 9.3E-16 2E-20 140.5 11.4 113 382-505 1-125 (125)
160 cd04049 C2_putative_Elicitor-r 99.6 1.5E-15 3.2E-20 138.9 12.2 103 381-491 1-108 (124)
161 cd04013 C2_SynGAP_like C2 doma 99.6 4.6E-15 9.9E-20 136.7 15.3 117 54-181 11-140 (146)
162 cd04037 C2E_Ferlin C2 domain f 99.6 1.2E-15 2.5E-20 139.1 11.3 92 55-146 1-94 (124)
163 KOG0696 Serine/threonine prote 99.6 1.5E-16 3.3E-21 162.3 5.8 115 42-164 170-290 (683)
164 cd04045 C2C_Tricalbin-like C2 99.6 1.9E-15 4E-20 136.7 11.8 103 381-492 1-104 (120)
165 cd00275 C2_PLC_like C2 domain 99.6 8.9E-15 1.9E-19 134.7 15.1 117 54-179 2-127 (128)
166 cd08407 C2B_Synaptotagmin-13 C 99.6 4.2E-15 9.1E-20 136.6 12.6 92 214-306 12-112 (138)
167 cd08676 C2A_Munc13-like C2 dom 99.6 3.1E-15 6.7E-20 139.7 10.9 100 377-489 24-153 (153)
168 cd08383 C2A_RasGAP C2 domain ( 99.6 7.4E-15 1.6E-19 132.9 12.9 112 383-509 2-117 (117)
169 cd04009 C2B_Munc13-like C2 dom 99.6 6.6E-15 1.4E-19 136.1 12.7 91 381-479 16-118 (133)
170 cd04040 C2D_Tricalbin-like C2 99.6 8.2E-15 1.8E-19 132.2 12.8 111 383-504 1-113 (115)
171 cd04048 C2A_Copine C2 domain f 99.6 5E-15 1.1E-19 134.5 11.2 100 59-163 5-115 (120)
172 cd04026 C2_PKC_alpha_gamma C2 99.6 7.9E-15 1.7E-19 135.5 12.8 103 381-492 13-122 (131)
173 cd08406 C2B_Synaptotagmin-12 C 99.6 7.4E-15 1.6E-19 135.2 12.4 103 217-326 15-124 (136)
174 cd08404 C2B_Synaptotagmin-4 C2 99.6 3.8E-15 8.2E-20 138.4 10.6 101 381-491 15-123 (136)
175 cd08675 C2B_RasGAP C2 domain s 99.6 6.1E-15 1.3E-19 136.5 11.0 102 383-493 1-122 (137)
176 cd08402 C2B_Synaptotagmin-1 C2 99.6 1.3E-14 2.7E-19 135.0 12.7 105 377-491 11-123 (136)
177 PLN03008 Phospholipase D delta 99.6 1.1E-14 2.3E-19 164.4 14.4 133 42-183 4-180 (868)
178 cd08410 C2B_Synaptotagmin-17 C 99.6 1.8E-14 3.9E-19 133.4 13.3 106 377-491 10-123 (135)
179 cd04021 C2_E3_ubiquitin_ligase 99.6 2.6E-14 5.6E-19 130.4 14.0 116 382-507 3-124 (125)
180 cd04052 C2B_Tricalbin-like C2 99.6 1.2E-14 2.6E-19 129.8 11.6 101 71-181 9-110 (111)
181 cd04052 C2B_Tricalbin-like C2 99.6 1.4E-14 3.1E-19 129.3 11.3 99 401-511 9-110 (111)
182 cd08692 C2B_Tac2-N C2 domain s 99.6 2.9E-14 6.2E-19 128.8 12.5 93 214-307 11-110 (135)
183 cd08691 C2_NEDL1-like C2 domai 99.6 4.7E-14 1E-18 129.6 14.1 118 382-507 2-136 (137)
184 cd08384 C2B_Rabphilin_Doc2 C2 99.6 6.1E-15 1.3E-19 136.6 8.1 105 377-491 9-121 (133)
185 cd08409 C2B_Synaptotagmin-15 C 99.6 1.2E-14 2.5E-19 134.8 9.8 102 380-490 14-123 (137)
186 cd08408 C2B_Synaptotagmin-14_1 99.6 4.8E-14 1E-18 130.5 13.4 104 378-490 12-124 (138)
187 cd08403 C2B_Synaptotagmin-3-5- 99.5 1.6E-14 3.5E-19 133.9 9.8 105 377-491 10-122 (134)
188 cd00276 C2B_Synaptotagmin C2 d 99.5 1.6E-14 3.5E-19 134.2 9.2 103 380-492 13-123 (134)
189 cd08686 C2_ABR C2 domain in th 99.5 1.1E-13 2.3E-18 121.5 13.5 93 383-489 1-107 (118)
190 KOG0696 Serine/threonine prote 99.5 5.3E-15 1.1E-19 151.2 6.1 103 218-326 181-289 (683)
191 cd04035 C2A_Rabphilin_Doc2 C2 99.5 1E-13 2.2E-18 126.5 13.8 98 381-487 15-121 (123)
192 cd04037 C2E_Ferlin C2 domain f 99.5 5.6E-14 1.2E-18 128.0 11.6 89 382-478 1-92 (124)
193 cd08405 C2B_Synaptotagmin-7 C2 99.5 9.1E-14 2E-18 129.2 13.1 104 216-326 14-124 (136)
194 cd08686 C2_ABR C2 domain in th 99.5 5.7E-14 1.2E-18 123.2 10.5 79 56-141 1-91 (118)
195 PLN03200 cellulose synthase-in 99.5 2.9E-14 6.2E-19 175.8 11.7 118 379-511 1978-2101(2102)
196 cd04048 C2A_Copine C2 domain f 99.5 6.6E-14 1.4E-18 127.1 10.8 97 386-490 5-113 (120)
197 cd00275 C2_PLC_like C2 domain 99.5 3.1E-13 6.7E-18 124.4 14.7 117 382-509 3-127 (128)
198 cd04047 C2B_Copine C2 domain s 99.5 1E-13 2.3E-18 123.8 10.8 90 57-147 3-102 (110)
199 PLN03200 cellulose synthase-in 99.5 9.4E-14 2E-18 171.4 11.5 118 52-180 1978-2100(2102)
200 PF06398 Pex24p: Integral pero 99.5 4.6E-13 9.9E-18 145.7 15.1 180 576-769 1-195 (359)
201 PF00168 C2: C2 domain; Inter 99.4 5E-13 1.1E-17 113.2 9.5 82 56-137 1-85 (85)
202 KOG1011 Neurotransmitter relea 99.4 2.5E-13 5.5E-18 144.5 8.9 121 54-182 295-426 (1283)
203 cd04047 C2B_Copine C2 domain s 99.4 2E-12 4.3E-17 115.5 10.0 88 385-481 4-102 (110)
204 KOG1013 Synaptic vesicle prote 99.4 3.2E-13 7E-18 134.6 5.2 219 218-476 94-328 (362)
205 PLN02270 phospholipase D alpha 99.3 6.3E-12 1.4E-16 142.4 13.8 127 381-513 8-151 (808)
206 cd00030 C2 C2 domain. The C2 d 99.3 3.6E-11 7.9E-16 104.8 11.7 100 56-160 1-102 (102)
207 KOG1011 Neurotransmitter relea 99.3 5.2E-12 1.1E-16 134.7 6.9 123 381-509 295-423 (1283)
208 cd08374 C2F_Ferlin C2 domain s 99.2 4.1E-11 8.9E-16 108.4 10.4 92 56-147 2-125 (133)
209 smart00239 C2 Protein kinase C 99.2 6.4E-11 1.4E-15 103.4 11.3 93 56-148 2-97 (101)
210 PLN02223 phosphoinositide phos 99.2 1.3E-10 2.8E-15 126.9 14.3 118 54-179 409-536 (537)
211 PF00168 C2: C2 domain; Inter 99.2 4.9E-11 1.1E-15 100.9 8.7 82 219-301 1-85 (85)
212 cd00030 C2 C2 domain. The C2 d 99.2 1.4E-10 3E-15 101.0 10.4 99 383-489 1-102 (102)
213 PLN02952 phosphoinositide phos 99.1 4.2E-10 9E-15 125.8 14.5 118 54-179 470-598 (599)
214 cd08374 C2F_Ferlin C2 domain s 99.1 2.5E-10 5.5E-15 103.3 10.3 94 383-481 2-125 (133)
215 smart00239 C2 Protein kinase C 99.1 2.8E-10 6E-15 99.3 10.5 91 383-481 2-96 (101)
216 PLN02270 phospholipase D alpha 99.1 5.5E-10 1.2E-14 126.9 14.5 125 49-182 5-150 (808)
217 KOG1328 Synaptic vesicle prote 99.1 1.8E-11 3.8E-16 132.6 1.5 126 52-183 112-304 (1103)
218 PLN02223 phosphoinositide phos 99.1 1.3E-09 2.9E-14 119.1 14.1 119 381-508 409-535 (537)
219 PLN02230 phosphoinositide phos 99.0 1.5E-09 3.2E-14 121.2 13.1 118 54-179 469-597 (598)
220 PLN02222 phosphoinositide phos 99.0 3E-09 6.5E-14 118.6 14.2 118 54-179 452-580 (581)
221 KOG0905 Phosphoinositide 3-kin 99.0 4.4E-10 9.5E-15 127.9 6.9 115 40-163 1514-1636(1639)
222 PLN02952 phosphoinositide phos 99.0 4.5E-09 9.8E-14 117.6 14.6 120 380-510 469-597 (599)
223 PLN02228 Phosphoinositide phos 99.0 4.2E-09 9.2E-14 117.1 14.1 119 54-180 431-561 (567)
224 KOG0169 Phosphoinositide-speci 99.0 3.3E-09 7.2E-14 118.0 11.8 119 54-180 616-744 (746)
225 cd08689 C2_fungal_Pkc1p C2 dom 98.9 3.2E-09 6.9E-14 89.7 8.5 85 56-146 1-89 (109)
226 KOG1031 Predicted Ca2+-depende 98.9 4.2E-09 9.1E-14 111.6 10.2 120 381-510 3-136 (1169)
227 PLN02230 phosphoinositide phos 98.9 1.1E-08 2.4E-13 114.3 13.8 121 380-509 468-597 (598)
228 PLN02222 phosphoinositide phos 98.9 1.7E-08 3.6E-13 112.7 14.6 121 380-509 451-580 (581)
229 cd08689 C2_fungal_Pkc1p C2 dom 98.9 6.4E-09 1.4E-13 87.9 8.3 87 383-479 1-88 (109)
230 KOG1328 Synaptic vesicle prote 98.9 7.1E-10 1.5E-14 120.4 3.2 103 41-145 936-1049(1103)
231 PLN02228 Phosphoinositide phos 98.9 2.2E-08 4.7E-13 111.5 14.6 124 380-512 430-563 (567)
232 KOG1327 Copine [Signal transdu 98.8 4.4E-08 9.6E-13 106.2 15.0 200 68-309 4-236 (529)
233 KOG1031 Predicted Ca2+-depende 98.8 5.9E-09 1.3E-13 110.5 8.1 126 54-181 3-137 (1169)
234 KOG0169 Phosphoinositide-speci 98.8 1.9E-08 4.1E-13 112.0 12.4 120 382-510 617-744 (746)
235 KOG1264 Phospholipase C [Lipid 98.8 2E-08 4.3E-13 110.6 11.1 119 54-181 1065-1190(1267)
236 PLN02352 phospholipase D epsil 98.7 6.9E-08 1.5E-12 109.9 12.4 121 380-514 9-134 (758)
237 KOG1264 Phospholipase C [Lipid 98.7 9.9E-08 2.1E-12 105.3 10.5 99 381-491 1065-1171(1267)
238 KOG1327 Copine [Signal transdu 98.6 3.4E-07 7.3E-12 99.5 13.8 181 249-479 41-236 (529)
239 cd08683 C2_C2cd3 C2 domain fou 98.6 4.7E-08 1E-12 85.0 5.0 107 383-489 1-143 (143)
240 PLN02352 phospholipase D epsil 98.6 5.6E-07 1.2E-11 102.7 13.4 121 48-183 6-133 (758)
241 PF12416 DUF3668: Cep120 prote 98.3 0.00038 8.3E-09 73.4 25.9 244 56-309 2-295 (340)
242 KOG0905 Phosphoinositide 3-kin 98.3 1.2E-06 2.6E-11 100.8 6.3 102 381-490 1524-1634(1639)
243 PF12416 DUF3668: Cep120 prote 98.0 0.0039 8.5E-08 65.9 25.2 239 219-479 2-295 (340)
244 KOG2060 Rab3 effector RIM1 and 97.9 7.6E-06 1.6E-10 84.1 3.9 114 47-165 262-382 (405)
245 cd08683 C2_C2cd3 C2 domain fou 97.9 1.7E-05 3.7E-10 69.4 5.2 101 56-160 1-143 (143)
246 PLN02964 phosphatidylserine de 97.9 2E-05 4.4E-10 89.6 6.9 95 44-147 46-141 (644)
247 PLN02964 phosphatidylserine de 97.8 3.6E-05 7.8E-10 87.7 6.4 87 380-481 53-141 (644)
248 cd08684 C2A_Tac2-N C2 domain f 97.7 5.1E-05 1.1E-09 61.4 4.3 89 57-147 2-96 (103)
249 cd08684 C2A_Tac2-N C2 domain f 97.5 0.00014 3E-09 59.0 4.2 95 220-322 2-102 (103)
250 KOG2060 Rab3 effector RIM1 and 97.5 8.7E-05 1.9E-09 76.5 3.5 107 379-492 267-380 (405)
251 KOG3837 Uncharacterized conser 97.4 0.00012 2.5E-09 76.1 3.8 119 381-510 367-503 (523)
252 PF08372 PRT_C: Plant phosphor 97.3 0.0012 2.5E-08 61.2 8.3 83 554-637 29-117 (156)
253 KOG3837 Uncharacterized conser 96.9 0.00063 1.4E-08 70.8 3.5 121 54-181 367-504 (523)
254 PF15627 CEP76-C2: CEP76 C2 do 96.8 0.019 4.1E-07 53.3 11.3 125 382-512 10-152 (156)
255 PF15627 CEP76-C2: CEP76 C2 do 96.5 0.029 6.3E-07 52.1 10.4 123 54-181 9-151 (156)
256 KOG1265 Phospholipase C [Lipid 96.0 0.034 7.3E-07 63.6 9.9 110 54-179 703-822 (1189)
257 KOG1265 Phospholipase C [Lipid 95.5 0.056 1.2E-06 62.0 9.2 94 380-492 702-806 (1189)
258 PF02453 Reticulon: Reticulon; 95.3 0.0056 1.2E-07 59.0 0.6 61 708-768 90-150 (169)
259 cd08398 C2_PI3K_class_I_alpha 95.2 0.16 3.4E-06 47.9 9.8 85 54-142 8-105 (158)
260 cd08693 C2_PI3K_class_I_beta_d 95.2 0.14 3E-06 49.3 9.6 87 54-142 8-119 (173)
261 PF10358 NT-C2: N-terminal C2 94.9 0.46 1E-05 44.2 12.3 115 382-512 8-137 (143)
262 PF10358 NT-C2: N-terminal C2 94.7 0.84 1.8E-05 42.4 13.6 119 54-182 7-137 (143)
263 cd08398 C2_PI3K_class_I_alpha 94.7 0.23 5E-06 46.9 9.5 88 382-477 9-106 (158)
264 cd08380 C2_PI3K_like C2 domain 94.0 0.34 7.5E-06 45.8 9.4 89 54-143 8-107 (156)
265 cd08397 C2_PI3K_class_III C2 d 93.9 0.56 1.2E-05 44.4 10.4 94 73-187 28-130 (159)
266 KOG1452 Predicted Rho GTPase-a 93.7 0.13 2.8E-06 52.1 6.0 117 379-509 49-166 (442)
267 cd08687 C2_PKN-like C2 domain 93.7 0.78 1.7E-05 38.1 9.2 63 75-143 9-72 (98)
268 cd08397 C2_PI3K_class_III C2 d 93.0 0.35 7.6E-06 45.8 7.5 69 404-477 29-107 (159)
269 KOG1452 Predicted Rho GTPase-a 93.0 0.36 7.8E-06 49.0 7.7 114 52-180 49-167 (442)
270 cd08693 C2_PI3K_class_I_beta_d 92.9 0.63 1.4E-05 44.8 9.1 86 218-306 9-119 (173)
271 cd04012 C2A_PI3K_class_II C2 d 92.2 0.71 1.5E-05 44.4 8.5 90 54-143 8-119 (171)
272 cd08380 C2_PI3K_like C2 domain 91.9 0.79 1.7E-05 43.4 8.5 87 219-307 10-107 (156)
273 cd08687 C2_PKN-like C2 domain 91.4 2 4.4E-05 35.8 8.8 85 403-509 7-92 (98)
274 cd08399 C2_PI3K_class_I_gamma 89.8 2.3 5E-05 40.9 9.3 71 55-126 11-89 (178)
275 PF00792 PI3K_C2: Phosphoinosi 89.7 3.5 7.5E-05 38.3 10.4 75 89-184 23-105 (142)
276 cd08399 C2_PI3K_class_I_gamma 89.6 3.7 8E-05 39.5 10.6 91 382-476 11-121 (178)
277 cd04012 C2A_PI3K_class_II C2 d 89.4 1.8 3.8E-05 41.7 8.4 90 218-307 9-119 (171)
278 PF00792 PI3K_C2: Phosphoinosi 88.0 3.5 7.6E-05 38.2 9.1 54 419-477 23-85 (142)
279 KOG1329 Phospholipase D1 [Lipi 87.0 0.76 1.6E-05 53.8 4.7 107 403-514 136-244 (887)
280 PF08151 FerI: FerI (NUC094) d 86.6 1.3 2.9E-05 35.4 4.6 43 303-354 2-44 (72)
281 cd08695 C2_Dock-B C2 domains f 86.2 6.3 0.00014 38.2 9.8 40 87-126 54-95 (189)
282 PF14429 DOCK-C2: C2 domain in 86.2 2.3 5.1E-05 41.4 7.2 58 417-476 60-120 (184)
283 cd08694 C2_Dock-A C2 domains f 86.1 4.8 0.0001 39.1 9.0 59 416-475 53-114 (196)
284 smart00142 PI3K_C2 Phosphoinos 84.0 6.6 0.00014 33.9 8.2 71 56-126 13-92 (100)
285 cd08694 C2_Dock-A C2 domains f 83.2 11 0.00024 36.6 10.1 40 86-125 53-94 (196)
286 PF11618 DUF3250: Protein of u 83.0 4.5 9.8E-05 35.3 6.7 96 78-180 2-105 (107)
287 KOG1329 Phospholipase D1 [Lipi 82.6 3.2 6.9E-05 48.9 7.2 86 75-166 138-225 (887)
288 cd08695 C2_Dock-B C2 domains f 82.2 2.9 6.2E-05 40.5 5.6 57 417-476 54-113 (189)
289 PF11618 DUF3250: Protein of u 81.5 9.1 0.0002 33.5 8.0 93 408-510 2-105 (107)
290 PF14429 DOCK-C2: C2 domain in 80.5 5.2 0.00011 38.9 7.0 56 87-142 60-120 (184)
291 cd08696 C2_Dock-C C2 domains f 79.4 7.4 0.00016 37.5 7.4 61 416-476 54-118 (179)
292 PF15625 CC2D2AN-C2: CC2D2A N- 79.4 9.6 0.00021 36.5 8.3 71 74-146 36-109 (168)
293 smart00142 PI3K_C2 Phosphoinos 79.3 13 0.00029 32.0 8.4 71 219-290 13-92 (100)
294 PF15625 CC2D2AN-C2: CC2D2A N- 77.8 10 0.00022 36.3 7.9 80 405-490 37-123 (168)
295 cd05137 RasGAP_CLA2_BUD2 CLA2/ 75.9 4.6 9.9E-05 44.2 5.5 45 466-512 1-46 (395)
296 PF11696 DUF3292: Protein of u 72.4 9.5 0.00021 43.7 7.0 79 687-774 90-169 (642)
297 cd08679 C2_DOCK180_related C2 71.5 26 0.00057 33.8 9.2 54 87-141 54-114 (178)
298 cd08697 C2_Dock-D C2 domains f 67.6 22 0.00047 34.5 7.4 61 416-476 56-123 (185)
299 PF06219 DUF1005: Protein of u 64.7 72 0.0016 34.6 11.0 109 404-512 35-169 (460)
300 cd08679 C2_DOCK180_related C2 64.4 22 0.00047 34.4 7.0 58 418-476 55-115 (178)
301 PF06398 Pex24p: Integral pero 63.9 18 0.00039 39.4 7.0 46 701-746 12-60 (359)
302 PF06219 DUF1005: Protein of u 61.5 40 0.00086 36.5 8.5 105 75-180 36-167 (460)
303 KOG3543 Ca2+-dependent activat 61.4 41 0.00088 37.9 8.8 99 382-490 342-440 (1218)
304 cd08696 C2_Dock-C C2 domains f 59.6 27 0.00059 33.6 6.5 40 87-126 55-96 (179)
305 PTZ00447 apical membrane antig 59.0 1.2E+02 0.0025 32.0 11.0 111 53-178 57-171 (508)
306 PTZ00447 apical membrane antig 56.8 1.3E+02 0.0028 31.7 10.9 108 382-507 59-170 (508)
307 cd08697 C2_Dock-D C2 domains f 55.9 37 0.00081 32.9 6.8 40 86-125 56-97 (185)
308 PF08151 FerI: FerI (NUC094) d 53.0 30 0.00064 27.8 4.6 48 140-189 3-51 (72)
309 KOG0694 Serine/threonine prote 49.4 5.7 0.00012 45.5 0.1 95 74-181 27-122 (694)
310 KOG1792 Reticulon [Intracellul 47.0 76 0.0017 32.0 7.6 39 709-747 131-169 (230)
311 KOG0694 Serine/threonine prote 43.8 9 0.0002 44.0 0.6 93 404-510 27-121 (694)
312 PF07162 B9-C2: Ciliary basal 43.8 2.3E+02 0.005 27.0 10.2 79 56-140 4-101 (168)
313 KOG3385 V-SNARE [Intracellular 43.6 55 0.0012 28.7 5.1 18 687-704 38-55 (118)
314 PF09726 Macoilin: Transmembra 42.2 52 0.0011 39.1 6.4 17 743-759 90-106 (697)
315 KOG2419 Phosphatidylserine dec 39.4 8.3 0.00018 43.4 -0.5 60 381-441 280-340 (975)
316 KOG0904 Phosphatidylinositol 3 37.6 1.6E+02 0.0035 35.2 9.1 103 381-489 343-472 (1076)
317 PF02453 Reticulon: Reticulon; 37.5 11 0.00024 35.9 0.0 29 718-746 1-29 (169)
318 PF07162 B9-C2: Ciliary basal 37.2 2.8E+02 0.0061 26.4 9.6 81 383-477 4-104 (168)
319 KOG2419 Phosphatidylserine dec 33.7 11 0.00025 42.3 -0.6 59 54-113 280-342 (975)
320 PF04842 DUF639: Plant protein 33.5 53 0.0012 38.1 4.5 61 704-764 492-555 (683)
321 KOG4269 Rac GTPase-activating 32.6 21 0.00045 42.1 1.2 88 380-476 758-855 (1112)
322 PF10409 PTEN_C2: C2 domain of 32.0 3.8E+02 0.0082 24.1 10.7 88 219-308 6-98 (134)
323 PF14924 DUF4497: Protein of u 31.4 1.2E+02 0.0026 26.7 5.6 63 443-510 28-104 (112)
324 KOG0860 Synaptobrevin/VAMP-lik 30.8 1.4E+02 0.0031 26.3 5.6 36 697-732 62-97 (116)
325 KOG3142 Prenylated rab accepto 30.0 5.2E+02 0.011 25.1 9.9 21 617-637 76-96 (187)
326 PF00957 Synaptobrevin: Synapt 29.7 1.4E+02 0.0031 24.8 5.6 33 698-730 37-69 (89)
327 cd05137 RasGAP_CLA2_BUD2 CLA2/ 29.5 74 0.0016 35.0 4.7 43 132-180 1-44 (395)
328 KOG3543 Ca2+-dependent activat 29.1 5.4E+02 0.012 29.5 11.0 115 54-179 341-458 (1218)
329 PRK09458 pspB phage shock prot 26.8 1.9E+02 0.0042 23.4 5.3 19 693-711 43-61 (75)
330 PF14909 SPATA6: Spermatogenes 26.1 5.2E+02 0.011 23.8 12.6 88 56-147 4-103 (140)
331 PF10409 PTEN_C2: C2 domain of 24.6 5.2E+02 0.011 23.2 12.4 90 382-478 5-98 (134)
332 PF14963 CAML: Calcium signal- 24.3 3.6E+02 0.0079 27.2 7.8 31 620-650 172-202 (263)
333 PF08653 DASH_Dam1: DASH compl 24.2 3.3E+02 0.0072 20.9 6.0 47 691-740 4-50 (58)
334 KOG0904 Phosphatidylinositol 3 24.0 1.2E+02 0.0026 36.1 5.3 73 46-124 338-421 (1076)
335 PF14909 SPATA6: Spermatogenes 24.0 4.7E+02 0.01 24.1 8.0 84 383-478 4-100 (140)
336 PF15202 Adipogenin: Adipogeni 22.3 1.3E+02 0.0029 23.4 3.4 18 634-651 23-40 (81)
337 PF08060 NOSIC: NOSIC (NUC001) 21.8 1.6E+02 0.0035 22.0 3.9 32 702-733 7-38 (53)
338 PF01544 CorA: CorA-like Mg2+ 21.3 2.3E+02 0.0049 29.4 6.6 71 691-767 195-265 (292)
339 KOG1032 Uncharacterized conser 21.2 1.2E+02 0.0026 35.3 4.6 71 56-126 99-169 (590)
340 PF14924 DUF4497: Protein of u 20.3 3.2E+02 0.0069 24.0 6.2 67 113-181 27-105 (112)
341 KOG4269 Rac GTPase-activating 20.2 40 0.00087 39.9 0.5 67 53-126 758-829 (1112)
342 PHA02844 putative transmembran 20.1 2.2E+02 0.0049 22.8 4.4 17 709-725 18-34 (75)
No 1
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=100.00 E-value=4.5e-41 Score=305.49 Aligned_cols=156 Identities=77% Similarity=1.363 Sum_probs=153.2
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 003882 634 LPTIFLYMFLIGIWNYRFRPRHPPHMDTKLSWADAVHPDELDEEFDTFPTSKQQDVVRMRYDRLRSVAGRIQTVVGDMAT 713 (789)
Q Consensus 634 ~p~~~l~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~vq~~l~~~a~ 713 (789)
+|+++++++++++|+|++||+.|+|+|.++|+.+++++||+|||+|.+|++++++.++++|+++++++++|||.+|++|+
T Consensus 1 lp~~~l~~~~~~~w~yr~rpr~p~~~d~~ls~~~~~~~deldEEfD~~ps~~~~~~lr~Rydrlr~va~rvQ~vlgd~At 80 (156)
T PF08372_consen 1 LPTVFLYLFLIGLWNYRFRPRHPPHMDTKLSHADSAHPDELDEEFDTFPSSRPPDSLRMRYDRLRSVAGRVQNVLGDVAT 80 (156)
T ss_pred CchHHHHHHHHHHhccccCCCCCCCCCccccccccCCcchhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhccccCCchhhHHHHHHHHHHHHHHhhhhhHHHHhhhhhhhccCCcccCCCCCchhhhhhcCCCCcCCCC
Q 003882 714 QGERFQALLSWRDPRATSLFVIFCLIAAVVLYVTPFKIITLVAGLFWLRHPRFRSKLPSIPSNFFRRLPSRADTML 789 (789)
Q Consensus 714 ~~e~~~~l~~w~~p~~t~~~~~~l~~~~~~~~~iP~r~i~l~~g~~~~~~P~~r~~~p~~~~~~~~rlPs~~~~~~ 789 (789)
++||++|+++|+||.+|++++++|+++++++|++|+|+++++||+|++|||++|.++|+.+.|||+||||++|+||
T Consensus 81 ~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~~P~~~~nff~RlPs~~d~~l 156 (156)
T PF08372_consen 81 QGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNPLPSPPLNFFRRLPSRSDSML 156 (156)
T ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCCCCcHHHHHHHHCCCchhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4e-30 Score=279.64 Aligned_cols=228 Identities=31% Similarity=0.433 Sum_probs=198.8
Q ss_pred cccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe---eeeeccccCCCCCeeccEEEEEc--cCC
Q 003882 38 ISSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNY---KGKTRHFEKKSNPEWKQVFAFSK--EKI 112 (789)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~T~~~~~t~nP~wne~f~f~~--~~~ 112 (789)
.|..++++.|+... ..|.|+|++|++|+..+..|.+||||++++.+. +.+|++.++|+||+|||+|.|.+ .++
T Consensus 153 ~G~l~fsl~Yd~~~--~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l 230 (421)
T KOG1028|consen 153 VGNLQFSLQYDFEL--NLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEEL 230 (421)
T ss_pred eeeEEEEEEecccC--CEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHh
Confidence 67889999999987 999999999999999997788999999999974 57999999999999999999996 345
Q ss_pred CCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCC-ccceEEEEEEEEeecCCCcCCccC
Q 003882 113 QSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDR-KVKGEVMLAVWIGTQADEAFPEAW 191 (789)
Q Consensus 113 ~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~~~~~d~~~~~~~ 191 (789)
....|.+.|||+|+++++++||++.++|..+....... .|.+|....... ...|+|.+++.|.
T Consensus 231 ~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~-----~w~~l~~~~~~~~~~~gel~~sL~Y~----------- 294 (421)
T KOG1028|consen 231 SNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTL-----FWKDLQPSSTDSEELAGELLLSLCYL----------- 294 (421)
T ss_pred ccCEEEEEEEecCCcccccEEEEEEecCccccccccce-----eeeccccccCCcccccceEEEEEEee-----------
Confidence 68999999999999999999999999999998876544 899998864322 2338999999997
Q ss_pred CCCCcccCCCccccccccccccCccEEEEEEEEEeecCCCCCCCCCCCeEEEEEECC-----eEEeeecccCCCCCCccC
Q 003882 192 HSDAATVEGEGVFNIRSKVYVSPKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVGN-----QVLKTKLCPTRTTNPLWN 266 (789)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~v~~ar~L~~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~~t~nP~wn 266 (789)
|..+.|+|.|++|++|..++.++.+||||++.+.. .+++|.+.++ +.||+||
T Consensus 295 ----------------------p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~-~~npv~n 351 (421)
T KOG1028|consen 295 ----------------------PTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKK-TLNPVFN 351 (421)
T ss_pred ----------------------cCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccC-CCCCccc
Confidence 34467999999999999999999999999999853 4677888876 9999999
Q ss_pred ceeEEEeeC--CCCCeEEEEEEEccCCCCCCceEEEEEeccc
Q 003882 267 EDLIFVAAE--PFEEQLVLTVENKVTPAKDEPLGRLRLSLNV 306 (789)
Q Consensus 267 e~f~f~~~~--~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~ 306 (789)
|+|.|.+.. .....+.|+|||++.++.+++||.+.+....
T Consensus 352 esf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 352 ETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred ccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence 999998753 3445799999999999999999999888764
No 3
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.96 E-value=3.7e-27 Score=266.60 Aligned_cols=399 Identities=19% Similarity=0.239 Sum_probs=305.9
Q ss_pred ccCceeEEEEEEEEeeCCCCCC--CCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCC
Q 003882 49 LVEQMFYLYVRVEKARDLPTNP--VSGSCDPYVEVKLGNY-KGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDRE 125 (789)
Q Consensus 49 ~~~~~~~L~V~v~~a~~L~~~~--~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~ 125 (789)
....+|+|.|+|.+|++|...+ .++..|||+++.+.+. ..||++++++.||+|||+|+..+... ++.|.++|||.+
T Consensus 431 s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n 509 (1227)
T COG5038 431 SGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFN 509 (1227)
T ss_pred cCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEeccc-CCceeEEEEecc
Confidence 4457899999999999999888 6889999999998764 56999999999999999999999887 699999999998
Q ss_pred CCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEeecCCCcCCccCCCCCcccCCCcccc
Q 003882 126 IVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGTQADEAFPEAWHSDAATVEGEGVFN 205 (789)
Q Consensus 126 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 205 (789)
.+.+|+.+|.+.++|..|..+..... .-+.+.. .....|+|...+.|.+.........-.. .
T Consensus 510 ~~~sd~vvG~~~l~L~~L~~~~~~~n----e~~e~~~---~~k~vGrL~yDl~ffp~~e~k~~~~~s~--e--------- 571 (1227)
T COG5038 510 SFKSDKVVGSTQLDLALLHQNPVKKN----ELYEFLR---NTKNVGRLTYDLRFFPVIEDKKELKGSV--E--------- 571 (1227)
T ss_pred ccCCcceeeeEEechHHhhhcccccc----ceeeeec---cCccceEEEEeeeeecccCCcccccccc--C---------
Confidence 88999999999999999998755431 2333322 2256899999999886553321110000 0
Q ss_pred ccccccccCccEEEEEEEEEeecCCCCCCCCCCCeEEEEEECCe-EEeeecccCCCCCCccCceeEEEeeCCCCCeEEEE
Q 003882 206 IRSKVYVSPKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQ-VLKTKLCPTRTTNPLWNEDLIFVAAEPFEEQLVLT 284 (789)
Q Consensus 206 ~~~~~~~~~~~~~L~V~v~~ar~L~~~~~~~~~dpyv~v~l~~~-~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~ 284 (789)
-......|.+.+++.++++|..... ....-++++++..+ .+.|+..+. +.+|.||+++.-.+.+.....+.+.
T Consensus 572 ----~~ed~n~GI~k~tl~~~~~l~~~~~-~~~~~~a~l~~~~keV~st~~~k~-t~~~~wn~~~~~~v~~~~ns~~~~~ 645 (1227)
T COG5038 572 ----PLEDSNTGILKVTLREVKALDELSS-KKDNKSAELYTNAKEVYSTGKLKF-TNHPSWNLQYNVLVTDRKNSSIKVV 645 (1227)
T ss_pred ----CcccCCcceeEEEeeccccccCccc-cccceeEEEEecceEEeccceeee-ccCCceeeecceEeccCcceeEEEE
Confidence 0011235789999999999986542 22333488888875 556677776 9999999999999988888889999
Q ss_pred EEEccCCCCCCceEEEEEeccccccccCCCCCcceeEEccccCcccchhcccccccccceEEEEEEEcCcccccCCcccc
Q 003882 285 VENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKFGFGALELDKRHELKFSSRIHLRVCLEGAYHVMDESTMY 364 (789)
Q Consensus 285 V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~~~~~~~~d~~~~~ 364 (789)
++|.. ..+.+|+...+|.++..+ ......||++..+ +|+|.+..++.+.+-..
T Consensus 646 ~~d~~---~g~~i~~~~~~l~~li~~---t~dt~~~f~~~~~---------------kg~I~~t~~W~Pi~~~~------ 698 (1227)
T COG5038 646 TFDVQ---SGKVIATEGSTLPDLIDR---TLDTFLVFPLRNP---------------KGRIFITNYWKPIYNAG------ 698 (1227)
T ss_pred ecccc---cCceeccccccchHhhhc---cccceEEEEcCCC---------------cceEEEEeccceeeccc------
Confidence 98874 567889988888887643 4456789999865 69999988776544111
Q ss_pred cCCCCcccccccCCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeCCC
Q 003882 365 ISDQRPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLK-WVRTRTLVDNFNPKWNEQYTWEVYDPC 443 (789)
Q Consensus 365 ~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~~~ 443 (789)
..++...+..++|.++|.|..|.+|... ...+.+|||++|.+++. ++||-....++||.||+....++..+.
T Consensus 699 ----~~~s~~~~~~pIg~irv~v~~andl~n~---i~g~~~dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v~sk~ 771 (1227)
T COG5038 699 ----GSSSKTVYDTPIGAIRVSVRKANDLRNE---IPGGKSDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSKN 771 (1227)
T ss_pred ----cccceeeecCccceEEEEeehhhccccc---ccCcccccceEEEecceeEEEEecccCccccceeeeEEEEecCCc
Confidence 1123334567899999999999999854 45689999999999774 599999999999999999999999999
Q ss_pred ceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccCc---eEe-------eeEeeeecCCCCCccceEEEEEEEEeecC
Q 003882 444 TVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADR---IYT-------HSYPLLVLNPSGVKKMGELQLAVRFTCLS 513 (789)
Q Consensus 444 ~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~---~~~-------~~~~L~~~~~~g~~~~G~i~l~~~f~~~~ 513 (789)
+.+.+.++|....+ .|..||.+.|+++++.... .+. ..-+|. ..|.+.+|++.+..+|.|..
T Consensus 772 ~r~~l~~~~~~~sg-----ddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~---~~~~~~~~tit~~~~f~p~~ 843 (1227)
T COG5038 772 QRLTLECMDYEESG-----DDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLS---LTGKKVKGTITYKCRFYPAV 843 (1227)
T ss_pred cEEeeeeecchhcc-----ccceeceeeeeeeeeeecCCCcceEEeecCcccccccc---cccCCcceeEEEEEEEEeec
Confidence 99999999999886 8999999999999988621 111 111111 12345579999998888765
Q ss_pred h
Q 003882 514 L 514 (789)
Q Consensus 514 ~ 514 (789)
.
T Consensus 844 i 844 (1227)
T COG5038 844 I 844 (1227)
T ss_pred c
Confidence 4
No 4
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.7e-25 Score=243.55 Aligned_cols=215 Identities=23% Similarity=0.347 Sum_probs=178.3
Q ss_pred cEEEEEEEEEeecCCCCCCCCCCCeEEEEEECC---eEEeeecccCCCCCCccCceeEEEeeC--CCCCeEEEEEEEccC
Q 003882 216 LWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVGN---QVLKTKLCPTRTTNPLWNEDLIFVAAE--PFEEQLVLTVENKVT 290 (789)
Q Consensus 216 ~~~L~V~v~~ar~L~~~~~~~~~dpyv~v~l~~---~~~kT~~~~~~t~nP~wne~f~f~~~~--~~~~~l~i~V~d~d~ 290 (789)
...|.|+|++|++|+.++..+.+||||++++.. .+.+|++.++ ++||.|||+|.|.+.. .....|.++|||.|.
T Consensus 166 ~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~-tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr 244 (421)
T KOG1028|consen 166 LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRK-TLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR 244 (421)
T ss_pred CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeec-CcCCccccceEeecCHHHhccCEEEEEEEecCC
Confidence 346999999999999999777899999999984 5788999987 9999999999999643 356789999999999
Q ss_pred CCCCCceEEEEEeccccccccCCCCCcceeEEccccCcccchhcccccccccceEEEEEEEcCcccccCCcccccCCCCc
Q 003882 291 PAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKFGFGALELDKRHELKFSSRIHLRVCLEGAYHVMDESTMYISDQRP 370 (789)
Q Consensus 291 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~ 370 (789)
++++++||++.++|..+.. ......|.++.... ....+..|+|.+.+++.
T Consensus 245 fsr~~~iGev~~~l~~~~~----~~~~~~w~~l~~~~--------~~~~~~~gel~~sL~Y~------------------ 294 (421)
T KOG1028|consen 245 FSRHDFIGEVILPLGEVDL----LSTTLFWKDLQPSS--------TDSEELAGELLLSLCYL------------------ 294 (421)
T ss_pred cccccEEEEEEecCccccc----cccceeeecccccc--------CCcccccceEEEEEEee------------------
Confidence 9999999999999887752 22256799998863 11112238999999853
Q ss_pred ccccccCCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE--CC---EEEeeccccCCCCCccccEEEEEEeC---C
Q 003882 371 TARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY--GL---KWVRTRTLVDNFNPKWNEQYTWEVYD---P 442 (789)
Q Consensus 371 ~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~--~~---~~~~T~~~~~t~~P~wne~~~f~v~~---~ 442 (789)
|..|.|+|.|++|++|..++ ..+.+||||++.+ ++ .+.+|.++++++||+|||.|.|.|.. .
T Consensus 295 -------p~~g~ltv~v~kar~L~~~~---~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~ 364 (421)
T KOG1028|consen 295 -------PTAGRLTVVVIKARNLKSMD---VGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLA 364 (421)
T ss_pred -------cCCCeEEEEEEEecCCCccc---CCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhh
Confidence 34589999999999999884 4588999999987 33 34899999999999999999998874 2
Q ss_pred CceEEEEEEeCCCCCCCCCCCCCccEEEEEECcc
Q 003882 443 CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLST 476 (789)
Q Consensus 443 ~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~ 476 (789)
...|.|+|||+|.++ .+++||.+.+....
T Consensus 365 ~~~l~l~V~d~d~~~-----~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 365 EVSLELTVWDHDTLG-----SNDLIGRCILGSDS 393 (421)
T ss_pred eeEEEEEEEEccccc-----ccceeeEEEecCCC
Confidence 458999999999987 77799999998775
No 5
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.91 E-value=2.6e-22 Score=227.63 Aligned_cols=408 Identities=19% Similarity=0.193 Sum_probs=275.2
Q ss_pred ccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCC
Q 003882 49 LVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-YKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIV 127 (789)
Q Consensus 49 ~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~ 127 (789)
...++|.++|+|..|++|.....++.+|||++|.+++ .++||-....|.||+|||..+.++..+ .+.+.+++.|+...
T Consensus 706 ~~~pIg~irv~v~~andl~n~i~g~~~dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v~sk-~~r~~l~~~~~~~s 784 (1227)
T COG5038 706 YDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSK-NQRLTLECMDYEES 784 (1227)
T ss_pred ecCccceEEEEeehhhcccccccCcccccceEEEecceeEEEEecccCccccceeeeEEEEecCC-ccEEeeeeecchhc
Confidence 4447799999999999999888899999999999998 478999999999999999999999877 47799999999999
Q ss_pred CCCceeEEEEEEccccCCCCCCCCCCC------CeeEEcccCCCCCccceEEEEEEEEeecCCCcCC-------------
Q 003882 128 GRDDYIGKVVFDMNEVPTRVPPDSPLA------PQWYRLEDRRDDRKVKGEVMLAVWIGTQADEAFP------------- 188 (789)
Q Consensus 128 ~~d~~lG~~~i~l~~l~~~~~~~~~~~------~~w~~L~~~~~~~~~~G~l~l~~~~~~~~d~~~~------------- 188 (789)
+.|..+|++.++++++....... .+. ..--+|... .....|.+.+.+.|.+..-....
T Consensus 785 gddr~lg~~~i~vsn~~~k~~~s-~~~~~i~g~~~t~~l~~~--~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~ 861 (1227)
T COG5038 785 GDDRNLGEVNINVSNVSKKDEDS-ALMETIDGAEETGKLSLT--GKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEK 861 (1227)
T ss_pred cccceeceeeeeeeeeeecCCCc-ceEEeecCcccccccccc--cCCcceeEEEEEEEEeecccCChHHhcchhhhhhHH
Confidence 99999999999999998743221 000 001111111 12467999999988653211000
Q ss_pred -------------ccCCCCCcccCCCcc--ccc------cccccc----cCccEEEEEEEEEeecCCCCCCCCCCCeEEE
Q 003882 189 -------------EAWHSDAATVEGEGV--FNI------RSKVYV----SPKLWYLRVNVIEAQDVEPLDKSQLPQAFVE 243 (789)
Q Consensus 189 -------------~~~~~~~~~~~~~~~--~~~------~~~~~~----~~~~~~L~V~v~~ar~L~~~~~~~~~dpyv~ 243 (789)
..|..|......+.. ... +.+... .-..+.+.++++.++=.. +.-|+.
T Consensus 862 ~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~-------~~~~l~ 934 (1227)
T COG5038 862 RKSEKRKSALDEKTISLVDKEDSVEESIEVEELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPD-------PGQYLQ 934 (1227)
T ss_pred HHhhhhhcccCccccchhccccchhcceeeccccchhhcchhhhhhhhhcccCCceEEEEEEeecCC-------cceEEE
Confidence 011111110000000 000 001000 112244677777765222 245666
Q ss_pred EEECC--eEEeeecccCCCCCCccCceeEEEeeCCCCCeEEEEEEEccCCCCCCceEEEEEeccccccccCCCCCcceeE
Q 003882 244 AQVGN--QVLKTKLCPTRTTNPLWNEDLIFVAAEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWF 321 (789)
Q Consensus 244 v~l~~--~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~ 321 (789)
+.+.+ ...-+..... +..+.|.+.-...+.+..-....+.|.+. ....++.++..+++--++..+ ....+.|+
T Consensus 935 ~f~Dd~~~~~i~s~~~~-t~~~~~~~~g~~~ireL~~s~~tfrv~K~-a~~~dk~v~e~t~~t~~lvs~---~~~kp~~l 1009 (1227)
T COG5038 935 IFFDDASHPQIVSSKAP-TRGERNGESGDTFIRELEYSETTFRVTKN-AKKSDKVVCEVTLPTLDLVSN---AYEKPSSL 1009 (1227)
T ss_pred EEecCCCCceeeccCCc-ccccccchhhhhhhhhhccceEEEEeccC-CcccCceeeecccchhHHHHH---hhCCCcEE
Confidence 66654 1122222212 56677776655566666666788888765 335678888888876666543 23345577
Q ss_pred EccccCcccchhcccccccccceEEEEEEEcCcccccCCcccccCCCCcccccccCCCccEEEEEEEEccCCCCCccCCC
Q 003882 322 NLEKFGFGALELDKRHELKFSSRIHLRVCLEGAYHVMDESTMYISDQRPTARQLWKQPIGILEVGILSAQGLLPMKTRDG 401 (789)
Q Consensus 322 ~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~ 401 (789)
.+.+. ..+.+++.+.+.. ...+ +.+ + -.+.|.|.|.+..|.||+.. |.
T Consensus 1010 n~~g~----------------~~~~v~~~~tPv~----~~l~------~~e--m-v~nsG~l~I~~~~~~nl~~~---d~ 1057 (1227)
T COG5038 1010 NFPGS----------------AKVLVQVSYTPVP----VKLP------PVE--M-VENSGYLTIMLRSGENLPSS---DE 1057 (1227)
T ss_pred ecCCC----------------ceEEEEEEEeecc----cccC------cce--e-ecccCcEEEEEeccCCCccc---cc
Confidence 66542 3555666554331 1111 000 0 23459999999999999987 55
Q ss_pred CCCcCcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeC-CCceEEEEEEeCCCCCCCCCCCCCccEEEEEECccccc
Q 003882 402 RGTTDAYCVAKYGLK-WVRTRTLVDNFNPKWNEQYTWEVYD-PCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEA 479 (789)
Q Consensus 402 ~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~-~~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~ 479 (789)
+|.+||||++.++++ .++|+++++|+||+|||++..+|.. ..+.+++.|+|||.-. +++.||++.|+|+.+..
T Consensus 1058 ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~-----knd~lg~~~idL~~l~~ 1132 (1227)
T COG5038 1058 NGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGE-----KNDLLGTAEIDLSKLEP 1132 (1227)
T ss_pred CCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCC-----CccccccccccHhhcCc
Confidence 689999999999877 7999999999999999999999985 5789999999999854 89999999999999999
Q ss_pred CceEeeeEeeeecCCCCCccceEEEEEEEEee
Q 003882 480 DRIYTHSYPLLVLNPSGVKKMGELQLAVRFTC 511 (789)
Q Consensus 480 ~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 511 (789)
++.+....+|.+.. .+ ...|.++....|.+
T Consensus 1133 ~~~~n~~i~ldgk~-~~-~~~g~~~~~~~~r~ 1162 (1227)
T COG5038 1133 GGTTNSNIPLDGKT-FI-VLDGTLHPGFNFRS 1162 (1227)
T ss_pred CCccceeeeccCcc-eE-ecccEeecceecch
Confidence 99988888886442 11 23466666554443
No 6
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.90 E-value=3.2e-23 Score=222.69 Aligned_cols=251 Identities=24% Similarity=0.328 Sum_probs=204.0
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCce
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNY-KGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDY 132 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~ 132 (789)
..|.|+|.+|+||++.+..|.+||||.|.++.+ .+||.++.+++.|.|.|+|+|.+... -..|.|.|||.| +++|+.
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~-F~~l~fYv~D~d-~~~D~~ 82 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRT-FRYLSFYVWDRD-LKRDDI 82 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcc-eeeEEEEEeccc-cccccc
Confidence 569999999999999999999999999999985 68999999999999999999998654 489999999999 899999
Q ss_pred eEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEeecCCCcCCccCCCCCcccCCCccccccccccc
Q 003882 133 IGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGTQADEAFPEAWHSDAATVEGEGVFNIRSKVYV 212 (789)
Q Consensus 133 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (789)
||.+.|.=.+|......+ .|+.|+.-...+++.|+|++++.+.....
T Consensus 83 IGKvai~re~l~~~~~~d-----~W~~L~~VD~dsEVQG~v~l~l~~~e~~~---------------------------- 129 (800)
T KOG2059|consen 83 IGKVAIKREDLHMYPGKD-----TWFSLQPVDPDSEVQGKVHLELALTEAIQ---------------------------- 129 (800)
T ss_pred cceeeeeHHHHhhCCCCc-----cceeccccCCChhhceeEEEEEEeccccC----------------------------
Confidence 999999999999877666 99999998887889999999998753211
Q ss_pred cCccEEEEEEEEEeecCCCCCCCCCCCeEEEEEECCe----EEeeecccCCCCCCccCceeEEEeeCC------------
Q 003882 213 SPKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQ----VLKTKLCPTRTTNPLWNEDLIFVAAEP------------ 276 (789)
Q Consensus 213 ~~~~~~L~V~v~~ar~L~~~~~~~~~dpyv~v~l~~~----~~kT~~~~~~t~nP~wne~f~f~~~~~------------ 276 (789)
...+...+++++++.+.. ++.+|||+++...+. ..+|++.++ |.+|.|+|.|.|.+...
T Consensus 130 ---~~~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kk-t~~p~~~Ev~~f~~~~~~~~s~ks~~~~~ 204 (800)
T KOG2059|consen 130 ---SSGLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKK-TTNPQFDEVFYFEVTREESYSKKSLFMPE 204 (800)
T ss_pred ---CCcchhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeee-ccCcchhhheeeeeccccccccchhcCcc
Confidence 112456666777777665 455999999998753 458999987 99999999999987543
Q ss_pred ---CCCeEEEEEEE-ccCCCCCCceEEEEEeccccccccCCCCCcceeEEccccCcccchhcccccccccceEEEEEEEc
Q 003882 277 ---FEEQLVLTVEN-KVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKFGFGALELDKRHELKFSSRIHLRVCLE 352 (789)
Q Consensus 277 ---~~~~l~i~V~d-~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~~ 352 (789)
....|.+.+|+ .+....+.|+|++.+++..+.. ......||-|.+.+ .|++...+...|.+.+.+++.
T Consensus 205 ~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~----~s~p~~W~~Lqp~~----~g~~~~~~~~lGslrl~v~y~ 276 (800)
T KOG2059|consen 205 EEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQ----KSSPAAWYYLQPRP----NGEKSSDGGDLGSLRLNVTYT 276 (800)
T ss_pred cCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhh----ccCccceEEEecCC----CcccCCCCCCccceeeeEEee
Confidence 23357778888 4556669999999999988752 22367899998873 455445566688888888764
No 7
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.88 E-value=1.3e-21 Score=175.48 Aligned_cols=118 Identities=18% Similarity=0.264 Sum_probs=103.8
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccC-CCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCce
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEK-KSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDY 132 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~-t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~ 132 (789)
|.|.|+|++|++++..+ .|++||||++.+++++.+|+++.+ +.||+|||+|.|.+.+. ...|.|+|||+|.+++|++
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~~dd~ 79 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFTMDER 79 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCcCCce
Confidence 78999999999998777 789999999999999999999876 79999999999999764 4689999999999999999
Q ss_pred eEEEEEEcc-ccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEE
Q 003882 133 IGKVVFDMN-EVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWI 179 (789)
Q Consensus 133 lG~~~i~l~-~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 179 (789)
||++.+++. .+..+...+ .||+|.+..+. ...|+|+++++|
T Consensus 80 iG~~~i~l~~~~~~g~~~~-----~W~~L~~~~~~-~~~g~i~l~l~y 121 (121)
T cd04016 80 IAWTHITIPESVFNGETLD-----DWYSLSGKQGE-DKEGMINLVFSY 121 (121)
T ss_pred EEEEEEECchhccCCCCcc-----ccEeCcCccCC-CCceEEEEEEeC
Confidence 999999996 566665444 99999987654 567999999875
No 8
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.87 E-value=1.2e-21 Score=175.77 Aligned_cols=119 Identities=22% Similarity=0.353 Sum_probs=104.1
Q ss_pred ccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccC-CCCCccccEEEEEEeCCCceEEEEEEeCCCCCC
Q 003882 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVD-NFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGG 458 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~-t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~ 458 (789)
.|.|+|+|++|++|+.. + .|++||||+|.+|++++||+++++ +.||+|||.|.|.+.+....|.|+|||+|.++
T Consensus 1 ~g~L~v~v~~Ak~l~~~---~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~- 75 (121)
T cd04016 1 VGRLSITVVQAKLVKNY---G-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFT- 75 (121)
T ss_pred CcEEEEEEEEccCCCcC---C-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCc-
Confidence 38999999999998754 2 479999999999999999999876 89999999999999876678999999999986
Q ss_pred CCCCCCCccEEEEEECc-ccccCceEeeeEeeeecCCCCCccceEEEEEEEE
Q 003882 459 SGTKPDSRIGKVRIRLS-TLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRF 509 (789)
Q Consensus 459 ~~~~~d~~lG~~~i~l~-~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 509 (789)
+|++||.+.|++. .+..++..+.||+|... .|.++.|+|+|.++|
T Consensus 76 ----~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~--~~~~~~g~i~l~l~y 121 (121)
T cd04016 76 ----MDERIAWTHITIPESVFNGETLDDWYSLSGK--QGEDKEGMINLVFSY 121 (121)
T ss_pred ----CCceEEEEEEECchhccCCCCccccEeCcCc--cCCCCceEEEEEEeC
Confidence 8999999999996 57788888999999754 344567999999875
No 9
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.87 E-value=1.2e-21 Score=176.71 Aligned_cols=121 Identities=74% Similarity=1.236 Sum_probs=106.0
Q ss_pred EEEEEEEEccC---CCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCC-
Q 003882 382 ILEVGILSAQG---LLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLG- 457 (789)
Q Consensus 382 ~l~v~v~~a~~---L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~- 457 (789)
.|+|+|++|+| |+.+ +..|.+||||+|++|+++.||+++++++||+|||+|.|.+.++...|.|+|||++..+
T Consensus 1 ~L~v~v~~A~~~~~l~~~---d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~ 77 (126)
T cd08379 1 ILEVGILGAQGLDVLRAK---DGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHW 77 (126)
T ss_pred CeEEEEEEeECCcccccc---ccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccc
Confidence 48999999999 6655 5678999999999999999999999999999999999999988889999999998751
Q ss_pred CCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEE
Q 003882 458 GSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQL 505 (789)
Q Consensus 458 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l 505 (789)
++...+|++||++.|+|+++..+.....||+|...++.+.++.|+|++
T Consensus 78 ~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 78 KEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred cccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 011137899999999999999999999999999887777778899975
No 10
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.87 E-value=2.2e-21 Score=181.88 Aligned_cols=149 Identities=62% Similarity=1.049 Sum_probs=127.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCeEEEEEECCeEEeeecccCCCCCCccCceeEEEeeCCCCCeEEEEEEEccCCCCCCceE
Q 003882 219 LRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTRTTNPLWNEDLIFVAAEPFEEQLVLTVENKVTPAKDEPLG 298 (789)
Q Consensus 219 L~V~v~~ar~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~d~~~~d~~iG 298 (789)
|+|+|++|++|+..+.+|.+||||++.++++.++|+++.+++.||.|||.|.|.+.++..+.+.|+|+|++..+++++||
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG 81 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLG 81 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEE
Confidence 78999999999999999999999999999999999998754699999999999998777789999999999888899999
Q ss_pred EEEEeccccccccCCCCCcceeEEccccCcccchhcccccccccceEEEEEEEcCcccccCCcccccCCCCc
Q 003882 299 RLRLSLNVIERRLDHRPVHSKWFNLEKFGFGALELDKRHELKFSSRIHLRVCLEGAYHVMDESTMYISDQRP 370 (789)
Q Consensus 299 ~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~ 370 (789)
++.++|+++....+.+....+||+|.+.+.. .+ .++..+..|+|++++++.+.+++++++.+|++|++|
T Consensus 82 ~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~-~~--~~k~~k~~g~l~l~i~~~~~~~~~~~~~~~~~~~~~ 150 (150)
T cd04019 82 RAVIPLNDIERRVDDRPVPSRWFSLERPGGA-ME--QKKKRKFASRIHLRLCLDGGYHVLDESTHYSSDLRP 150 (150)
T ss_pred EEEEEHHHCcccCCCCccCCceEECcCCCCc-cc--ccccCcccccEEEEEEecCcceEeecccccccCCCC
Confidence 9999999987543345567899999986310 00 123345689999999999999999999999999875
No 11
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.86 E-value=2.9e-21 Score=207.83 Aligned_cols=249 Identities=19% Similarity=0.319 Sum_probs=195.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCeEEEEEECC-eEEeeecccCCCCCCccCceeEEEeeCCCCCeEEEEEEEccCCCCCCc
Q 003882 218 YLRVNVIEAQDVEPLDKSQLPQAFVEAQVGN-QVLKTKLCPTRTTNPLWNEDLIFVAAEPFEEQLVLTVENKVTPAKDEP 296 (789)
Q Consensus 218 ~L~V~v~~ar~L~~~~~~~~~dpyv~v~l~~-~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~d~~~~d~~ 296 (789)
.|.|.|.+|+||+..+..|..||||.|.+.+ ...||.++.+ ++.|.|.|+|.|.+... -..|.|-|||.| +++|+.
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~k-sL~PF~gEe~~~~iP~~-F~~l~fYv~D~d-~~~D~~ 82 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEK-SLCPFFGEEFYFEIPRT-FRYLSFYVWDRD-LKRDDI 82 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhh-hcCCccccceEEecCcc-eeeEEEEEeccc-cccccc
Confidence 4899999999999999999999999999987 5899999998 99999999999999664 347999999999 999999
Q ss_pred eEEEEEeccccccccCCCCCcceeEEccccCcccchhcccccccccceEEEEEEEcCcccccCCcccccCCCCccccccc
Q 003882 297 LGRLRLSLNVIERRLDHRPVHSKWFNLEKFGFGALELDKRHELKFSSRIHLRVCLEGAYHVMDESTMYISDQRPTARQLW 376 (789)
Q Consensus 297 iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~ 376 (789)
||.+.|.-.+|.. .+..+.|+.|.+-+ .+.+..|+|++.+.+.+... .
T Consensus 83 IGKvai~re~l~~----~~~~d~W~~L~~VD---------~dsEVQG~v~l~l~~~e~~~---~---------------- 130 (800)
T KOG2059|consen 83 IGKVAIKREDLHM----YPGKDTWFSLQPVD---------PDSEVQGKVHLELALTEAIQ---S---------------- 130 (800)
T ss_pred cceeeeeHHHHhh----CCCCccceeccccC---------CChhhceeEEEEEEeccccC---C----------------
Confidence 9999999888863 23578899999873 56778999999998754321 0
Q ss_pred CCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEE----EeeccccCCCCCccccEEEEEEeCC----------
Q 003882 377 KQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKW----VRTRTLVDNFNPKWNEQYTWEVYDP---------- 442 (789)
Q Consensus 377 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~----~~T~~~~~t~~P~wne~~~f~v~~~---------- 442 (789)
.-+...++.++++.+.+ ++.+||||++...+.. .+|+++++|.+|.|+|.|.|.+...
T Consensus 131 ----~~~~c~~L~~r~~~P~~----~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~ 202 (800)
T KOG2059|consen 131 ----SGLVCHVLKTRQGLPII----NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFM 202 (800)
T ss_pred ----CcchhhhhhhcccCcee----CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcC
Confidence 02223334445555432 3569999999986554 5999999999999999999988643
Q ss_pred ------CceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCC----ccceEEEEEEEEeec
Q 003882 443 ------CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGV----KKMGELQLAVRFTCL 512 (789)
Q Consensus 443 ------~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~----~~~G~i~l~~~f~~~ 512 (789)
...|.+.+|++.... ..++|+|.+.+++..+........||-|....++.. ..-|.+.+.+.|...
T Consensus 203 ~~~e~~~l~irv~lW~~~~~~----~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D 278 (800)
T KOG2059|consen 203 PEEEDDMLEIRVDLWNDLNLV----INDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTED 278 (800)
T ss_pred cccCCceeeEEEeeccchhhh----hhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeeec
Confidence 237888999844332 258999999999999987777899999975532111 125889999888755
Q ss_pred C
Q 003882 513 S 513 (789)
Q Consensus 513 ~ 513 (789)
.
T Consensus 279 ~ 279 (800)
T KOG2059|consen 279 H 279 (800)
T ss_pred e
Confidence 3
No 12
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.85 E-value=4.1e-21 Score=168.88 Aligned_cols=111 Identities=16% Similarity=0.298 Sum_probs=97.1
Q ss_pred cccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC----eeeeeccccCCCCCeeccEEEEEcc--CCC
Q 003882 40 SERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN----YKGKTRHFEKKSNPEWKQVFAFSKE--KIQ 113 (789)
Q Consensus 40 ~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~----~~~~T~~~~~t~nP~wne~f~f~~~--~~~ 113 (789)
...+++.|+... +.|.|+|++|+||+ . .|.+||||+|++.+ .+++|+++++|+||+|||+|.|++. +..
T Consensus 2 ~l~fsL~Y~~~~--~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~ 76 (118)
T cd08677 2 KLHYSLSYDKQK--AELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESL 76 (118)
T ss_pred eEEEEEEEcCcC--CEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhC
Confidence 467999999988 99999999999999 3 46699999999975 4679999999999999999999984 456
Q ss_pred CceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEc
Q 003882 114 SSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRL 160 (789)
Q Consensus 114 ~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 160 (789)
...|.|+|||+|+++++++||++.+++.++......+ +|..|
T Consensus 77 ~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~-----~W~~~ 118 (118)
T cd08677 77 DGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAA-----QWVDL 118 (118)
T ss_pred CcEEEEEEEeCCCCCCCceEEEEEEccccccCCcccc-----chhcC
Confidence 7899999999999999999999999999987665544 77654
No 13
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.85 E-value=1.1e-20 Score=173.28 Aligned_cols=119 Identities=29% Similarity=0.501 Sum_probs=102.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccC-----CCCceEEEEEEeCCCCCCC
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEK-----IQSSVLEVFVRDREIVGRD 130 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~-----~~~~~l~v~V~d~~~~~~d 130 (789)
++|+|++|+||+..+..|.+||||+|.+++++++|+++++|.||+|||+|.|.+.. .....|.|+|||++.+++|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 47999999999999989999999999999999999999999999999999999866 3568999999999999899
Q ss_pred ceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCC-CccceEEEEEE
Q 003882 131 DYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDD-RKVKGEVMLAV 177 (789)
Q Consensus 131 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~~G~l~l~~ 177 (789)
++||++.|+|.++...... ....||+|.+..+. .+..|+|++++
T Consensus 81 ~~iG~~~i~l~~l~~~~~~---~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 81 KFLGQVSIPLNDLDEDKGR---RRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred ceeEEEEEEHHHhhccCCC---cccEEEECcCCCCCCccccceEEEEe
Confidence 9999999999998732211 13399999876542 34689999876
No 14
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.85 E-value=1.3e-20 Score=170.61 Aligned_cols=120 Identities=68% Similarity=1.189 Sum_probs=106.9
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCceeE
Q 003882 55 YLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYIG 134 (789)
Q Consensus 55 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~lG 134 (789)
.|.|+|++|+||+.. .+||||++.+++++.+|+++++|.||+|||+|.|.+..+....|.++|||++.. ++++||
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG 75 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLG 75 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceee
Confidence 389999999999887 789999999999999999999999999999999998876678999999999987 799999
Q ss_pred EEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEe
Q 003882 135 KVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIG 180 (789)
Q Consensus 135 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 180 (789)
++.++++++......++...+.||+|++..+ .+..|+|++++||+
T Consensus 76 ~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~-~~~~G~i~l~~~~~ 120 (121)
T cd08378 76 GVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG-GRVGGELMLAVWFG 120 (121)
T ss_pred eEEEEhHhCcCCCCCCCCCCcceEEccCCCC-CccceEEEEEEEec
Confidence 9999999998765444445669999998876 47889999999986
No 15
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.84 E-value=1.2e-20 Score=171.06 Aligned_cols=112 Identities=26% Similarity=0.481 Sum_probs=99.9
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEc---c
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSK---E 110 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~---~ 110 (789)
|..+++++|+ . +.|.|+|++|+||+..+ .+.+||||+|++.+ .++||++++++.||+|||+|.|.+ .
T Consensus 2 G~l~~~l~y~--~--~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~ 76 (122)
T cd08381 2 GQVKLSISYK--N--GTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVE 76 (122)
T ss_pred CeEEEEEEEe--C--CEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChH
Confidence 3678999999 3 78999999999999999 89999999999974 367999999999999999999986 3
Q ss_pred CCCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEc
Q 003882 111 KIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRL 160 (789)
Q Consensus 111 ~~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 160 (789)
++....|+|+|||++.++++++||++.|+|+++..+...+ .||+|
T Consensus 77 ~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~-----~W~~L 121 (122)
T cd08381 77 DLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETE-----KWYPL 121 (122)
T ss_pred HhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCcc-----ceEEC
Confidence 4457899999999999999999999999999999775444 89987
No 16
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.84 E-value=1.7e-20 Score=171.93 Aligned_cols=117 Identities=28% Similarity=0.424 Sum_probs=101.4
Q ss_pred EEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeC------CCceEEEEEEeCCCC
Q 003882 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYD------PCTVITLGVFDNCHL 456 (789)
Q Consensus 383 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~------~~~~l~v~v~d~~~~ 456 (789)
++|+|++|+||+.++ ..|.+||||+|+++++++||+++++++||+|||.|.|.+.. ....|.|+|||++.+
T Consensus 1 ~~V~V~~A~~L~~~d---~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCKG---KSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCCC---CCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 579999999999874 45789999999999999999999999999999999999976 367999999999987
Q ss_pred CCCCCCCCCccEEEEEECcccc--cCceEeeeEeeeecCCCCCccceEEEEEE
Q 003882 457 GGSGTKPDSRIGKVRIRLSTLE--ADRIYTHSYPLLVLNPSGVKKMGELQLAV 507 (789)
Q Consensus 457 ~~~~~~~d~~lG~~~i~l~~l~--~~~~~~~~~~L~~~~~~g~~~~G~i~l~~ 507 (789)
+ +|++||++.|+|+++. .+.....||+|........+..|+|+|++
T Consensus 78 ~-----~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 78 G-----LDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred C-----CCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEe
Confidence 5 7899999999999988 56677899999865433344579999976
No 17
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.84 E-value=3.8e-20 Score=169.95 Aligned_cols=121 Identities=32% Similarity=0.465 Sum_probs=105.0
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCC---CCceEEEEEEeCCCCC-CCc
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKI---QSSVLEVFVRDREIVG-RDD 131 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~---~~~~l~v~V~d~~~~~-~d~ 131 (789)
|.|+|++|++|+..+..|.+||||+|.+++++++|++++++.||+|||+|.|.+... ....|.|+|||++.++ +++
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~ 81 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRS 81 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCC
Confidence 899999999999999889999999999999999999999999999999999998653 2468999999999886 899
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEe
Q 003882 132 YIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIG 180 (789)
Q Consensus 132 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 180 (789)
+||++.++++++.... .....||+|+.+...++..|+|.+++++.
T Consensus 82 ~lG~v~i~l~~l~~~~----~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 82 FLGRVRISGTSFVPPS----EAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred eeeEEEEcHHHcCCCC----CccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 9999999999998321 12349999997654446799999999874
No 18
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.83 E-value=4.4e-20 Score=170.61 Aligned_cols=120 Identities=23% Similarity=0.248 Sum_probs=103.4
Q ss_pred CccccccceeeecccCceeEEEEEEEEeeCCCCCC-CCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEc
Q 003882 36 GWISSERATSTYDLVEQMFYLYVRVEKARDLPTNP-VSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSK 109 (789)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~-~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~ 109 (789)
...|..++++.|+ . +.|.|+|++|+||+..+ ..|.+||||++++.+ .++||+++++|+||+|||+|.|.+
T Consensus 15 ~~~G~l~lsl~y~--~--~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v 90 (146)
T cd04028 15 PSMGDIQLGLYDK--K--GQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDV 90 (146)
T ss_pred CCcceEEEEEEeC--C--CEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEE
Confidence 3467789999994 3 78999999999999864 568899999999965 267999999999999999999999
Q ss_pred cCCCCceEEEEEE-eCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCC
Q 003882 110 EKIQSSVLEVFVR-DREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRD 165 (789)
Q Consensus 110 ~~~~~~~l~v~V~-d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 165 (789)
. +....|.|+|| |++.++++++||++.|+|.++..+.... .||+|.+...
T Consensus 91 ~-l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~-----~Wy~L~~~~~ 141 (146)
T cd04028 91 S-PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVI-----GWYKLFPTSS 141 (146)
T ss_pred c-CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCce-----eEEecCCccc
Confidence 8 56789999999 6888889999999999999997765444 8999997653
No 19
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.83 E-value=3.3e-20 Score=169.31 Aligned_cols=116 Identities=28% Similarity=0.399 Sum_probs=102.7
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCC-CCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEcc--
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVS-GSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKE-- 110 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~-g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~-- 110 (789)
|..++++.|+... +.|.|+|++|+||+.++.. |.+||||+|++.+ .++||+++++|.||+|||+|.|.+.
T Consensus 2 G~i~~sl~y~~~~--~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~ 79 (125)
T cd08393 2 GSVQFALDYDPKL--RELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVERE 79 (125)
T ss_pred cEEEEEEEEECCC--CEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHH
Confidence 4679999999987 8999999999999999875 8999999999964 3579999999999999999999985
Q ss_pred CCCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcc
Q 003882 111 KIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLE 161 (789)
Q Consensus 111 ~~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 161 (789)
+.....|.|+|||++.++++++||++.|+|.++..+.... .||+|+
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~-----~W~~L~ 125 (125)
T cd08393 80 ELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQP-----TWYPLQ 125 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCc-----ceEECc
Confidence 3456799999999999999999999999999998775444 899985
No 20
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=99.83 E-value=3.1e-20 Score=202.49 Aligned_cols=216 Identities=21% Similarity=0.350 Sum_probs=162.7
Q ss_pred hccCCCccccchhhHHHHHHH-HHHHHhHHHHHHHhcccccccCchhhHHHHHHHHHHHHhcchhHHHHHHHHHHHHh--
Q 003882 570 MLDVDSHMWSMRRSKANFFRI-VSLFSGAISMSKWLGEVRYWKNPVTTILVHVLFLILICYPELILPTIFLYMFLIGI-- 646 (789)
Q Consensus 570 ~~~~~~~~~s~~~~~~n~~rl-~~~~~~~~~~~~~i~~l~~W~~p~~t~~~~~~~~~~~~~~~l~~p~~~l~l~~~~~-- 646 (789)
|.-+++++||..+|++|++|| ..++-.+.++.++|.+|++|++|++|++++++|++ +|+.++++|+++..++.+++
T Consensus 80 Ln~a~~e~FspdkLRa~lERlY~tv~v~~~~~~khi~RLrSW~eprRT~~fc~vYf~-aW~~dll~p~~~~~L~~li~~P 158 (642)
T PF11696_consen 80 LNIAEDEEFSPDKLRANLERLYMTVVVGLAAFIKHIARLRSWREPRRTAAFCAVYFI-AWLLDLLVPAFFAFLIALILSP 158 (642)
T ss_pred ccccccccCChHHHHHHhHhheeehHHHHHHHHHHHHHhhhhcccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCc
Confidence 444789999999999999999 55888999999999999999999999996665554 99999999999987776666
Q ss_pred --hccccCCCCCCCCCccc------------CCCCC-------------------------------------CCCCCC-
Q 003882 647 --WNYRFRPRHPPHMDTKL------------SWADA-------------------------------------VHPDEL- 674 (789)
Q Consensus 647 --~~~~~~~~~~~~~~~~~------------s~~~~-------------------------------------~~~~~~- 674 (789)
+.++|+|.+++.+|... |.++. ..+++.
T Consensus 159 ~~r~~lFPpap~alvd~~tgg~qkP~aGvLgs~dS~TGAPE~~KGEAvEqEAsNfV~siasvav~saaGK~~q~~p~~~~ 238 (642)
T PF11696_consen 159 PARSILFPPAPPALVDSKTGGVQKPKAGVLGSDDSVTGAPENHKGEAVEQEASNFVNSIASVAVSSAAGKHPQGDPDDDP 238 (642)
T ss_pred ccccccCCCCCcccccCCCCCccccccccccccccccCCCccccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccCC
Confidence 78889998887666422 11110 001111
Q ss_pred CCCCCCCC--------------------CCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccccCCch------
Q 003882 675 DEEFDTFP--------------------TSKQQDVVRMRYDRLRSVAGRIQTVVGDMATQGERFQALLSWRDPR------ 728 (789)
Q Consensus 675 ~~e~~~~~--------------------~~~~~~~~~~~~~~l~~~~~~vq~~l~~~a~~~e~~~~l~~w~~p~------ 728 (789)
+++..+++ ..+++++..|+ .++++.+..+|++|++++|++||+-|+|+.+.||
T Consensus 239 ~~~~~pd~~~v~~~~adak~~a~g~~~~~~~DkTk~Pm~-~~v~~~~~p~mh~l~di~Dt~ERfaNaLSPTpPFp~~~~R 317 (642)
T PF11696_consen 239 EEDSEPDPTDVATKAADAKDKAAGEKPKPSHDKTKQPMK-EAVWKKMRPIMHMLGDITDTWERFANALSPTPPFPRHTPR 317 (642)
T ss_pred ccCCCCChhhhhHhhhhhhhhccCCCCCCccchhhchHH-HHHHHhhhhHHHHHhhHHHHHHHHhhccCCCCCCCCccHH
Confidence 11111111 12234555555 6788899999999999999999999999999999
Q ss_pred --hhHHHHHHHHHHHHHHhhhhhHHHHhhhhhhhccCCccc-------CCCCCchh------hhhhcCCCCcCC
Q 003882 729 --ATSLFVIFCLIAAVVLYVTPFKIITLVAGLFWLRHPRFR-------SKLPSIPS------NFFRRLPSRADT 787 (789)
Q Consensus 729 --~t~~~~~~l~~~~~~~~~iP~r~i~l~~g~~~~~~P~~r-------~~~p~~~~------~~~~rlPs~~~~ 787 (789)
+..+++.+++++.++..++-.|.+.|++|+.||+.|.++ +++|+--. ..|+.|||++.+
T Consensus 318 lRLa~~l~p~~l~Sl~~ssy~~~K~~tF~~Gf~FFGdPiI~r~~~~Lnr~~P~W~k~leLrntlLkGVPTNAQL 391 (642)
T PF11696_consen 318 LRLAAILAPLLLASLFVSSYMFVKGTTFGFGFGFFGDPIITRGIDYLNRKYPNWQKLLELRNTLLKGVPTNAQL 391 (642)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHhccCCchHHH
Confidence 456777778888888888999999999999999999865 33444322 357888988764
No 21
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.83 E-value=7.8e-20 Score=166.39 Aligned_cols=119 Identities=27% Similarity=0.449 Sum_probs=107.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCcee
Q 003882 55 YLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-YKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYI 133 (789)
Q Consensus 55 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~l 133 (789)
+|+|+|++|++|+..+..|.+||||++.+++ ..++|+++.+|.||+|||+|.|.+.+. ...|.|+|||++..+++++|
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~~i 79 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDDFM 79 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCcce
Confidence 5899999999999999889999999999988 578999999999999999999998765 47899999999999999999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEe
Q 003882 134 GKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIG 180 (789)
Q Consensus 134 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 180 (789)
|.+.+++.++..+...+ .|++|.+..+. +..|+|.+.+.+.
T Consensus 80 G~~~~~l~~l~~~~~~~-----~~~~L~~~~~~-~~~G~l~l~~~~~ 120 (121)
T cd04042 80 GSAFVDLSTLELNKPTE-----VKLKLEDPNSD-EDLGYISLVVTLT 120 (121)
T ss_pred EEEEEEHHHcCCCCCeE-----EEEECCCCCCc-cCceEEEEEEEEC
Confidence 99999999999877666 89999887653 5789999999874
No 22
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.83 E-value=6.1e-20 Score=165.72 Aligned_cols=114 Identities=28% Similarity=0.305 Sum_probs=100.4
Q ss_pred EEEEEEEeeC---CCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCC----
Q 003882 56 LYVRVEKARD---LPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVG---- 128 (789)
Q Consensus 56 L~V~v~~a~~---L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~---- 128 (789)
|.|+|++|+| |..+|..|++||||++++++++.||+++++++||+|||+|.|.+.+.. ..|.|+|||++.++
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~-~~l~v~V~d~d~~~~~~~ 80 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPC-TVLTVGVFDNSQSHWKEA 80 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCC-CEEEEEEEECCCcccccc
Confidence 8899999999 888999999999999999999999999999999999999999997764 68999999999873
Q ss_pred --CCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCC-CccceEEEE
Q 003882 129 --RDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDD-RKVKGEVML 175 (789)
Q Consensus 129 --~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~~G~l~l 175 (789)
+|++||++.++|+.+..+...+ .||+|+..++. .+..|+|..
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~~~~~-----~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 81 VQPDVLIGKVRIRLSTLEDDRVYA-----HSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred CCCCceEEEEEEEHHHccCCCEEe-----eEEEeEeCCCCCccCCcEEEe
Confidence 8999999999999999876555 89999976533 245677754
No 23
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.83 E-value=7.7e-20 Score=173.36 Aligned_cols=123 Identities=25% Similarity=0.328 Sum_probs=108.4
Q ss_pred cEEEEEEEEccCCCCCccC---------------------------CCCCCcCcEEEEEECCEE-EeeccccCCCCCccc
Q 003882 381 GILEVGILSAQGLLPMKTR---------------------------DGRGTTDAYCVAKYGLKW-VRTRTLVDNFNPKWN 432 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~---------------------------~~~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~wn 432 (789)
|.|.|+|++|++|++||.. ...|.+||||+|.+++.. .||++++++.||+||
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~Wn 86 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWN 86 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccc
Confidence 8999999999999998731 246779999999998755 799999999999999
Q ss_pred cEEEEEEeCCCceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEE
Q 003882 433 EQYTWEVYDPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRF 509 (789)
Q Consensus 433 e~~~f~v~~~~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 509 (789)
|.|.|.+.++.+.|.|+|+|+|.+ .+++||++.|+++++..+...+.||+|.....++.+..|+|+|+++|
T Consensus 87 E~F~~~~~~~~~~l~~~V~d~d~~------~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 87 ESFHIYCAHYASHVEFTVKDNDVV------GAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred eEEEEEccCCCCEEEEEEEeCCCc------CCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 999999988888999999999986 46899999999999999888899999987655556667999999987
No 24
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.83 E-value=2.1e-20 Score=169.87 Aligned_cols=116 Identities=29% Similarity=0.505 Sum_probs=97.7
Q ss_pred CccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCC
Q 003882 379 PIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGG 458 (789)
Q Consensus 379 ~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~ 458 (789)
..|.|+|.|++|.||...|. .+++||||++.+|+++.||+++++++||+|||.|+|.|.+++..|+++|||+|.++
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~---~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs- 79 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDF---LGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFS- 79 (168)
T ss_pred cceEEEEEEEeecCeeeecc---ccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCC-
Confidence 36999999999999998754 47999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEE
Q 003882 459 SGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLA 506 (789)
Q Consensus 459 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~ 506 (789)
.||+||.+.|+|..+...+ ..++ |......|... |++.++
T Consensus 80 ----~dD~mG~A~I~l~p~~~~~--~~~~-l~~~~~~gt~~-~~v~~s 119 (168)
T KOG1030|consen 80 ----SDDFMGEATIPLKPLLEAQ--KMDY-LKLELLTGTAI-GKVLLS 119 (168)
T ss_pred ----cccccceeeeccHHHHHHh--hhhc-cccccCCCcEe-eEEEec
Confidence 9999999999999998766 3344 43333333332 545443
No 25
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.83 E-value=6.3e-20 Score=167.37 Aligned_cols=119 Identities=22% Similarity=0.336 Sum_probs=103.3
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCC-CCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccC-
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVS-GSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEK- 111 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~-g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~- 111 (789)
|..++++.|+... +.|.|+|++|+||+.++.. |.+||||++++.+ .++||++++++.||+|||+|.|.+..
T Consensus 2 G~i~~sl~Y~~~~--~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~ 79 (128)
T cd08392 2 GEIEFALHYNFRT--SCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEAD 79 (128)
T ss_pred cEEEEEEEEeCCC--CEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHH
Confidence 5689999999988 9999999999999999864 8999999999975 36799999999999999999999844
Q ss_pred -CCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcc
Q 003882 112 -IQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLE 161 (789)
Q Consensus 112 -~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 161 (789)
+....|.|.|||++.++++++||++.|+|+++...... ...+.||+|.
T Consensus 80 ~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~--~~~~~W~~l~ 128 (128)
T cd08392 80 LLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTD--SQRFLWYPLN 128 (128)
T ss_pred HhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCC--ccccceEECc
Confidence 34679999999999999999999999999999776432 2345899984
No 26
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.82 E-value=1.5e-19 Score=164.54 Aligned_cols=120 Identities=28% Similarity=0.393 Sum_probs=106.1
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC-EEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCC
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL-KWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGSG 460 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~ 460 (789)
.|+|+|++|+||+..+ ..|.+||||++.+++ +.++|++++++.||.|||.|.|.+.++...|.|+|||++..+
T Consensus 1 ~L~v~v~~a~~L~~~d---~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~--- 74 (121)
T cd04042 1 QLDIHLKEGRNLAARD---RGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGL--- 74 (121)
T ss_pred CeEEEEEEeeCCCCcC---CCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCC---
Confidence 3789999999999874 357899999999987 579999999999999999999999887889999999999976
Q ss_pred CCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEEee
Q 003882 461 TKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRFTC 511 (789)
Q Consensus 461 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 511 (789)
+|++||++.++++++..+...+.|++|.+.. +.+..|+|+|.+.|.|
T Consensus 75 --~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 75 --TDDFMGSAFVDLSTLELNKPTEVKLKLEDPN--SDEDLGYISLVVTLTP 121 (121)
T ss_pred --CCcceEEEEEEHHHcCCCCCeEEEEECCCCC--CccCceEEEEEEEECC
Confidence 8899999999999999888889999997542 3456799999998864
No 27
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.82 E-value=2e-19 Score=168.56 Aligned_cols=126 Identities=28% Similarity=0.480 Sum_probs=108.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccC-CCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCcee
Q 003882 55 YLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEK-KSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYI 133 (789)
Q Consensus 55 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~-t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~l 133 (789)
.|.|+|++|+||+..+..|.+||||+|+++++..+|+++.+ |.||+|||+|.|.+.++....|.|+|+|++..++|++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 38999999999999999999999999999999999999977 69999999999999776667999999999998899999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeeEEcccCCC------CCccceEEEEEEEEee
Q 003882 134 GKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRD------DRKVKGEVMLAVWIGT 181 (789)
Q Consensus 134 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~------~~~~~G~l~l~~~~~~ 181 (789)
|++.++|.++..+.. ......+||+|++..+ ..+..|+|++.+.+..
T Consensus 81 G~v~i~L~~l~~~~~-~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 81 GRAVIPLNDIERRVD-DRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred EEEEEEHHHCcccCC-CCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 999999999876421 1233459999998764 1256799999999864
No 28
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.82 E-value=9.6e-20 Score=166.01 Aligned_cols=116 Identities=21% Similarity=0.321 Sum_probs=102.4
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCC-CCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccC-
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPV-SGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEK- 111 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~-~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~- 111 (789)
|..++++.|+... +.|.|+|++|+||+..+. .|.+||||+|++.+ .++||++++++.||+|||+|.|.+..
T Consensus 2 G~i~~sl~y~~~~--~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~ 79 (125)
T cd04029 2 GEILFSLSYDYKT--QSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHS 79 (125)
T ss_pred cEEEEEEEEECCC--CeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHH
Confidence 5679999998877 999999999999998865 47899999999964 35799999999999999999999854
Q ss_pred -CCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcc
Q 003882 112 -IQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLE 161 (789)
Q Consensus 112 -~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 161 (789)
+....|.|+|||++.++++++||++.++|.++......+ .||+|+
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~-----~w~~l~ 125 (125)
T cd04029 80 QLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHE-----ECLPLH 125 (125)
T ss_pred HhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcc-----cEEECc
Confidence 346789999999999999999999999999999886655 999984
No 29
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.82 E-value=1.4e-19 Score=164.13 Aligned_cols=117 Identities=29% Similarity=0.434 Sum_probs=102.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccC-CCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCce
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEK-KSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDY 132 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~-t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~ 132 (789)
|.|.|+|++|+||+..+..+.+||||+|.+++++++|+++.+ +.||+|||+|.|.+.....+.|.|+|||++..+ +++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~ 79 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL 79 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence 579999999999999998999999999999999999998765 789999999999997765689999999999875 999
Q ss_pred eEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEE
Q 003882 133 IGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWI 179 (789)
Q Consensus 133 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 179 (789)
||++.+++.++..+...+ .||+|.... +..|+|.++++|
T Consensus 80 iG~~~~~l~~~~~~~~~~-----~w~~L~~~~---~~~G~i~l~l~f 118 (118)
T cd08681 80 IGDTEVDLSPALKEGEFD-----DWYELTLKG---RYAGEVYLELTF 118 (118)
T ss_pred eEEEEEecHHHhhcCCCC-----CcEEeccCC---cEeeEEEEEEEC
Confidence 999999999987764444 999998643 468999999865
No 30
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.81 E-value=6.7e-20 Score=166.66 Aligned_cols=96 Identities=32% Similarity=0.534 Sum_probs=90.9
Q ss_pred ceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCc
Q 003882 52 QMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDD 131 (789)
Q Consensus 52 ~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~ 131 (789)
..|.|+|+|++|.||..+|..+++||||.+.+++|+.||+++.+++||+|||.|.|.+.++ ...|.++|||+|.+++||
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~fs~dD 82 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTFSSDD 82 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCCCccc
Confidence 3489999999999999999879999999999999999999999999999999999999998 589999999999999999
Q ss_pred eeEEEEEEccccCCCCC
Q 003882 132 YIGKVVFDMNEVPTRVP 148 (789)
Q Consensus 132 ~lG~~~i~l~~l~~~~~ 148 (789)
|||.|+|+|..+.....
T Consensus 83 ~mG~A~I~l~p~~~~~~ 99 (168)
T KOG1030|consen 83 FMGEATIPLKPLLEAQK 99 (168)
T ss_pred ccceeeeccHHHHHHhh
Confidence 99999999999988754
No 31
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.81 E-value=3.6e-19 Score=164.43 Aligned_cols=123 Identities=24% Similarity=0.432 Sum_probs=105.3
Q ss_pred ceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCc
Q 003882 52 QMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDD 131 (789)
Q Consensus 52 ~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~ 131 (789)
.+|.|.|+|++|++|+..+..|.+||||++.++.+.++|+++++|.||.|||+|.|.+.+.....|.|+|||++.+++|+
T Consensus 13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~ 92 (136)
T cd08375 13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDD 92 (136)
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCC
Confidence 45899999999999999998999999999999999999999999999999999999998776789999999999999999
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEE
Q 003882 132 YIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWI 179 (789)
Q Consensus 132 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 179 (789)
+||++.+++.++.............|..+.. ...|+|++++.+
T Consensus 93 ~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~-----~~~g~i~l~~~~ 135 (136)
T cd08375 93 FLGRTEIRVADILKETKESKGPITKRLLLHE-----VPTGEVVVKLDL 135 (136)
T ss_pred eeEEEEEEHHHhccccccCCCcEEEEecccc-----ccceeEEEEEEe
Confidence 9999999999998743322223335566532 357999999876
No 32
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.81 E-value=5.4e-19 Score=159.71 Aligned_cols=115 Identities=29% Similarity=0.504 Sum_probs=103.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCceeE
Q 003882 55 YLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYIG 134 (789)
Q Consensus 55 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~lG 134 (789)
.|+|+|++|+||+..+..+.+||||++++++++++|+++++|.||.|||+|.|.+.+.....|.|+|||++.++++++||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG 80 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG 80 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence 37899999999999998899999999999999999999999999999999999997766789999999999998999999
Q ss_pred EEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEe
Q 003882 135 KVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIG 180 (789)
Q Consensus 135 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 180 (789)
++.++|.++..+...+ .|++|++. .|+|.+.+.|.
T Consensus 81 ~~~~~l~~l~~~~~~~-----~w~~L~~~------~G~~~~~~~~~ 115 (116)
T cd08376 81 RCEIDLSALPREQTHS-----LELELEDG------EGSLLLLLTLT 115 (116)
T ss_pred EEEEeHHHCCCCCceE-----EEEEccCC------CcEEEEEEEec
Confidence 9999999999876555 99999864 48888887653
No 33
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.81 E-value=5.5e-19 Score=160.01 Aligned_cols=117 Identities=26% Similarity=0.453 Sum_probs=102.2
Q ss_pred EEEEEEEeeCCCCCC-CCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCcee
Q 003882 56 LYVRVEKARDLPTNP-VSGSCDPYVEVKLGNY-KGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYI 133 (789)
Q Consensus 56 L~V~v~~a~~L~~~~-~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~l 133 (789)
|.|+|++|+||+..+ ..|.+||||+|.++++ .++|+++++|.||+|||+|.|.+.+. ...|.|.|||++.++++++|
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~~i 80 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDSVI 80 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCceE
Confidence 789999999999874 4578999999999875 57999999999999999999999764 47999999999999999999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEE
Q 003882 134 GKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVW 178 (789)
Q Consensus 134 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~ 178 (789)
|.+.++++++..+...+ .||+|+.....++..|+|++++.
T Consensus 81 G~~~i~l~~l~~~~~~~-----~w~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd08401 81 GKVAIKKEDLHKYYGKD-----TWFPLQPVDADSEVQGKVHLELR 120 (121)
T ss_pred EEEEEEHHHccCCCCcE-----eeEEEEccCCCCcccEEEEEEEE
Confidence 99999999999765544 89999976544457899999875
No 34
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.81 E-value=5.1e-19 Score=160.24 Aligned_cols=119 Identities=24% Similarity=0.383 Sum_probs=102.6
Q ss_pred EEEEEEEccCCCCCccCCCCCCcCcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCC
Q 003882 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLK-WVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGSGT 461 (789)
Q Consensus 383 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~~ 461 (789)
|.|.|++|+||++++. ..|.+||||.|.++++ .++|+++++|+||+|||+|.|.+.+....|.|.|||++.++
T Consensus 2 l~v~v~~a~~L~~~~~--~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~---- 75 (121)
T cd08401 2 LKIKIGEAKNLPPRSG--PNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLR---- 75 (121)
T ss_pred eEEEEEEccCCCCCCC--CCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCC----
Confidence 6799999999998743 2568999999999775 68999999999999999999999876689999999999876
Q ss_pred CCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEE
Q 003882 462 KPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRF 509 (789)
Q Consensus 462 ~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 509 (789)
+|++||++.++++++..++..+.||+|......+. ..|+|+|+++|
T Consensus 76 -~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~-~~G~i~l~~~~ 121 (121)
T cd08401 76 -RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSE-VQGKVHLELRL 121 (121)
T ss_pred -CCceEEEEEEEHHHccCCCCcEeeEEEEccCCCCc-ccEEEEEEEEC
Confidence 88999999999999998888899999975433232 47999999864
No 35
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=99.80 E-value=2.6e-19 Score=195.56 Aligned_cols=181 Identities=24% Similarity=0.333 Sum_probs=156.1
Q ss_pred ccchhhHHHHHHHHHHHHhHHHHHHHhcccccccCchhhHHHHHHHHHHHHhcch--hHHHHHHHHHHHHhhcccc-CCC
Q 003882 578 WSMRRSKANFFRIVSLFSGAISMSKWLGEVRYWKNPVTTILVHVLFLILICYPEL--ILPTIFLYMFLIGIWNYRF-RPR 654 (789)
Q Consensus 578 ~s~~~~~~n~~rl~~~~~~~~~~~~~i~~l~~W~~p~~t~~~~~~~~~~~~~~~l--~~p~~~l~l~~~~~~~~~~-~~~ 654 (789)
....-+-+|+..|++++.|+..++.+++.|.+|++|.+|+.+++++++++|..|+ ++|+++++++++|++.+.. +.
T Consensus 480 vkveGI~tNvav~kELL~Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~~~~~- 558 (683)
T PF04842_consen 480 VKVEGIDTNVAVMKELLFPLIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRYQGRL- 558 (683)
T ss_pred HhhcCCccHHHHHHhccccHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-
Confidence 3444556899999999999999999999999999999999999999999999886 8999999999999986654 22
Q ss_pred CCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccccCCchhhHHHH
Q 003882 655 HPPHMDTKLSWADAVHPDELDEEFDTFPTSKQQDVVRMRYDRLRSVAGRIQTVVGDMATQGERFQALLSWRDPRATSLFV 734 (789)
Q Consensus 655 ~~~~~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~vq~~l~~~a~~~e~~~~l~~w~~p~~t~~~~ 734 (789)
+..-++... ..+|+.+..+++.++|+.+.+++++|++++.++.|+|.++.|..|++|..++
T Consensus 559 -----------------g~~~~~v~V--~~pP~~nTvEqilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va 619 (683)
T PF04842_consen 559 -----------------GKSFGEVTV--RDPPPKNTVEQILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVA 619 (683)
T ss_pred -----------------CCccceEEe--cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHH
Confidence 222223222 3445677799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhHHHHhhhhhh-hccCCcccCCCCCchhhhhhcC
Q 003882 735 IFCLIAAVVLYVTPFKIITLVAGLF-WLRHPRFRSKLPSIPSNFFRRL 781 (789)
Q Consensus 735 ~~l~~~~~~~~~iP~r~i~l~~g~~-~~~~P~~r~~~p~~~~~~~~rl 781 (789)
++++++++++.++|+||++++..+. |+|+..+|+. +.++|.|||
T Consensus 620 ~~Ll~~A~~LavvP~kyil~~v~l~~FTre~~~Rr~---s~er~~RRl 664 (683)
T PF04842_consen 620 LALLGLAAVLAVVPFKYILLFVFLEVFTRESPFRRE---SSERFNRRL 664 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchh---hHHHHHHHH
Confidence 9999999999999999999998888 8999889986 666666654
No 36
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.80 E-value=5e-19 Score=161.89 Aligned_cols=116 Identities=28% Similarity=0.448 Sum_probs=103.3
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEEccC--CC
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN---YKGKTRHFEKKSNPEWKQVFAFSKEK--IQ 113 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~T~~~~~t~nP~wne~f~f~~~~--~~ 113 (789)
|..++++.|+... +.|.|+|++|+||+..+..|.+||||+|++.+ ..++|++++++.||+|||+|.|.+.. ..
T Consensus 3 G~l~~sl~y~~~~--~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~ 80 (124)
T cd08387 3 GELHFSLEYDKDM--GILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELP 80 (124)
T ss_pred CEEEEEEEECCCC--CEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhC
Confidence 4678999999876 99999999999999999899999999999953 46899999999999999999999754 33
Q ss_pred CceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcc
Q 003882 114 SSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLE 161 (789)
Q Consensus 114 ~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 161 (789)
...|.|+|||++.++++++||++.++++++..+...+ .||+|+
T Consensus 81 ~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~-----~W~~l~ 123 (124)
T cd08387 81 KRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLD-----LWRKIQ 123 (124)
T ss_pred CCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcc-----eEEECc
Confidence 5789999999999999999999999999999776555 899986
No 37
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.80 E-value=5.6e-19 Score=161.63 Aligned_cols=116 Identities=28% Similarity=0.394 Sum_probs=103.2
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEEccC--CC
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN---YKGKTRHFEKKSNPEWKQVFAFSKEK--IQ 113 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~T~~~~~t~nP~wne~f~f~~~~--~~ 113 (789)
|..+++++|+... +.|.|+|++|+||+..+..+.+||||++++.+ ..++|++++++.||+|||+|.|.+.. ..
T Consensus 3 G~l~~~l~y~~~~--~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~ 80 (124)
T cd08385 3 GKLQFSLDYDFQS--NQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELG 80 (124)
T ss_pred cEEEEEEEEeCCC--CEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhC
Confidence 5678999999988 89999999999999999889999999999965 35799999999999999999999854 34
Q ss_pred CceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcc
Q 003882 114 SSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLE 161 (789)
Q Consensus 114 ~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 161 (789)
...|.|+|||++.++++++||++.+++.++..+...+ +|++|+
T Consensus 81 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~-----~W~~l~ 123 (124)
T cd08385 81 NKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTE-----EWRDLE 123 (124)
T ss_pred CCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcc-----eEEEcc
Confidence 5789999999999999999999999999998765544 999986
No 38
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.80 E-value=4.4e-19 Score=160.22 Aligned_cols=114 Identities=21% Similarity=0.349 Sum_probs=100.4
Q ss_pred ccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC------eeeeeccccCCCCCeeccEEEEEcc--CC
Q 003882 41 ERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN------YKGKTRHFEKKSNPEWKQVFAFSKE--KI 112 (789)
Q Consensus 41 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~------~~~~T~~~~~t~nP~wne~f~f~~~--~~ 112 (789)
+++++.|+... +.|.|+|++|+||+..+..|.+||||++++.+ .++||++++++.||+|||+|.|++. ++
T Consensus 3 i~~sL~Y~~~~--~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L 80 (124)
T cd08680 3 VQIGLRYDSGD--SSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKL 80 (124)
T ss_pred EEEEEEECCCC--CEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHh
Confidence 57899999987 99999999999999998888999999999974 2579999999999999999999984 34
Q ss_pred CCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEc
Q 003882 113 QSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRL 160 (789)
Q Consensus 113 ~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 160 (789)
....|.|.|||++.++++++||++.|+|+++..... ....||+|
T Consensus 81 ~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~----~~~~Wy~l 124 (124)
T cd08680 81 YQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEE----MSTKWYNL 124 (124)
T ss_pred hcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCc----cccccccC
Confidence 678999999999999999999999999999976642 13489976
No 39
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.80 E-value=5.9e-19 Score=160.00 Aligned_cols=116 Identities=27% Similarity=0.461 Sum_probs=100.8
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccC-CCCCccccEEEEEEeCC-CceEEEEEEeCCCCCC
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVD-NFNPKWNEQYTWEVYDP-CTVITLGVFDNCHLGG 458 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~-t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~~~~ 458 (789)
|.|+|+|++|+||+..+ ..+.+||||+|+++++..+|+++++ +.||.|||.|.|.+..+ ...|.|+|||++..
T Consensus 1 g~L~V~v~~A~~L~~~~---~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-- 75 (118)
T cd08681 1 GTLVVVVLKARNLPNKR---KLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKR-- 75 (118)
T ss_pred CEEEEEEEEccCCCCCC---cCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC--
Confidence 68999999999999874 4578999999999999999999865 79999999999999874 67899999998874
Q ss_pred CCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEE
Q 003882 459 SGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRF 509 (789)
Q Consensus 459 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 509 (789)
.|++||++.++++++..+.....|++|... | +..|+|+|++.|
T Consensus 76 ----~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~---~-~~~G~i~l~l~f 118 (118)
T cd08681 76 ----KPDLIGDTEVDLSPALKEGEFDDWYELTLK---G-RYAGEVYLELTF 118 (118)
T ss_pred ----CCcceEEEEEecHHHhhcCCCCCcEEeccC---C-cEeeEEEEEEEC
Confidence 488999999999999877778999999732 3 357999999875
No 40
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.80 E-value=1.1e-18 Score=161.87 Aligned_cols=123 Identities=30% Similarity=0.471 Sum_probs=106.8
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-------eeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCC
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNY-------KGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVG 128 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-------~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~ 128 (789)
|+|+|++|+||+..+..|.+||||+|++.+. ..+|+++++|.||.|||+|.|.+... ...|.|+|||++.++
T Consensus 2 L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~~ 80 (133)
T cd04033 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRLT 80 (133)
T ss_pred EEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCCC
Confidence 8999999999999998889999999999764 46999999999999999999998654 478999999999999
Q ss_pred CCceeEEEEEEccccCCCCCCC-CCCCCeeEEcccCCCCCccceEEEEEEEE
Q 003882 129 RDDYIGKVVFDMNEVPTRVPPD-SPLAPQWYRLEDRRDDRKVKGEVMLAVWI 179 (789)
Q Consensus 129 ~d~~lG~~~i~l~~l~~~~~~~-~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 179 (789)
++++||++.+++.++..+.+.+ ......||+|++..+.++..|+|++++.|
T Consensus 81 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 81 RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 9999999999999999764432 23456999999776555789999999876
No 41
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.79 E-value=2.1e-18 Score=156.78 Aligned_cols=118 Identities=30% Similarity=0.571 Sum_probs=106.0
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCcee
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYI 133 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~l 133 (789)
|.|.|+|++|+||+..+..+.+||||++++++..++|+++++|.||.|||+|.|.+.+. ...|.|+|||++..+++++|
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~~~i 79 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKPEFL 79 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCCcee
Confidence 57999999999999999889999999999999889999999999999999999998765 47999999999998899999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEE
Q 003882 134 GKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWI 179 (789)
Q Consensus 134 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 179 (789)
|++.+++.++..+. . .||+|.+........|+|.+++.+
T Consensus 80 G~~~~~l~~~~~~~--~-----~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 80 GKVAIPLLSIKNGE--R-----KWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred eEEEEEHHHCCCCC--c-----eEEECcccCCCCceeeEEEEEEEe
Confidence 99999999987543 2 899999876655689999999865
No 42
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.79 E-value=6.3e-19 Score=160.50 Aligned_cols=116 Identities=24% Similarity=0.336 Sum_probs=102.5
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEE-cc--CC
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN---YKGKTRHFEKKSNPEWKQVFAFS-KE--KI 112 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~T~~~~~t~nP~wne~f~f~-~~--~~ 112 (789)
|..++++.|+... ..|.|+|++|+||+..+.+|.+||||++.+.+ +++||+++++ .||+|||+|.|+ +. ++
T Consensus 3 G~l~~sl~Y~~~~--~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l 79 (124)
T cd08389 3 GDLDVAFEYDPSA--RKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEEL 79 (124)
T ss_pred EEEEEEEEECCCC--CEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHh
Confidence 5689999999988 99999999999999999889999999988864 4679999887 999999999998 53 34
Q ss_pred CCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEccc
Q 003882 113 QSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLED 162 (789)
Q Consensus 113 ~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 162 (789)
....|.|+|||++.++++++||++.|+|+++..+.... .||+|++
T Consensus 80 ~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~-----~w~~L~p 124 (124)
T cd08389 80 NNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETT-----VWLTLEP 124 (124)
T ss_pred ccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCce-----EEEeCCC
Confidence 57899999999999999999999999999998765544 9999974
No 43
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.79 E-value=6.1e-19 Score=157.80 Aligned_cols=102 Identities=25% Similarity=0.384 Sum_probs=89.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC-------eeeeeccccCCCCCeeccEEEEEccC---CCCceEEEEEEeCC
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGN-------YKGKTRHFEKKSNPEWKQVFAFSKEK---IQSSVLEVFVRDRE 125 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-------~~~~T~~~~~t~nP~wne~f~f~~~~---~~~~~l~v~V~d~~ 125 (789)
|+|+|++|+||+..+ .|.+||||+|++.+ ++++|+++.+|+||+|||+|.|.+.. +....|.|.|||++
T Consensus 2 L~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 2 VTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred EEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 899999999999888 58999999999832 35689999999999999999999853 34578999999999
Q ss_pred CCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccC
Q 003882 126 IVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDR 163 (789)
Q Consensus 126 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 163 (789)
..+++++||++.+++.++..+...+ .|++|+..
T Consensus 81 ~~~~dd~IG~~~l~l~~~~~~~~~~-----~w~~L~~~ 113 (120)
T cd08395 81 FARDDRLVGVTVLQLRDIAQAGSCA-----CWLPLGRR 113 (120)
T ss_pred ccCCCCEEEEEEEEHHHCcCCCcEE-----EEEECcCc
Confidence 8888999999999999999876554 89999765
No 44
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.79 E-value=1.7e-18 Score=159.93 Aligned_cols=120 Identities=28% Similarity=0.480 Sum_probs=102.7
Q ss_pred CCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCC-CceEEEEEEeCCC
Q 003882 377 KQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDP-CTVITLGVFDNCH 455 (789)
Q Consensus 377 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~ 455 (789)
...+|.|+|+|++|+||+.++ ..|.+||||++.++++.++|++++++.||.|||.|.|.+.++ ...|.|+|||++.
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d---~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~ 87 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCN---SNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDF 87 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCC---CCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCC
Confidence 456799999999999999874 457899999999999999999999999999999999999875 5689999999998
Q ss_pred CCCCCCCCCCccEEEEEECccccc-----CceEeeeEeeeecCCCCCccceEEEEEEEEe
Q 003882 456 LGGSGTKPDSRIGKVRIRLSTLEA-----DRIYTHSYPLLVLNPSGVKKMGELQLAVRFT 510 (789)
Q Consensus 456 ~~~~~~~~d~~lG~~~i~l~~l~~-----~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 510 (789)
++ +|++||++.++++++.. ......|.++. + +..|+|+|++.|+
T Consensus 88 ~~-----~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~-----~-~~~g~i~l~~~~~ 136 (136)
T cd08375 88 FS-----PDDFLGRTEIRVADILKETKESKGPITKRLLLH-----E-VPTGEVVVKLDLQ 136 (136)
T ss_pred CC-----CCCeeEEEEEEHHHhccccccCCCcEEEEeccc-----c-ccceeEEEEEEeC
Confidence 75 78999999999999886 33445666663 2 2459999998763
No 45
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.79 E-value=1.9e-18 Score=158.00 Aligned_cols=119 Identities=24% Similarity=0.427 Sum_probs=101.5
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeCCC-ceEEEEEEeCCCCCC
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLK-WVRTRTLVDNFNPKWNEQYTWEVYDPC-TVITLGVFDNCHLGG 458 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~~~-~~l~v~v~d~~~~~~ 458 (789)
..|+|+|++|+||+.. +.+||||+|.+++. ..||++ +++.||.|||.|.|.+..+. ..++|.|||++..+
T Consensus 4 ~~L~V~Vi~A~~L~~~------~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~- 75 (126)
T cd08400 4 RSLQLNVLEAHKLPVK------HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRS- 75 (126)
T ss_pred eEEEEEEEEeeCCCCC------CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCC-
Confidence 4799999999999863 47899999999875 478987 46899999999999876553 58999999999876
Q ss_pred CCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEEee
Q 003882 459 SGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRFTC 511 (789)
Q Consensus 459 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 511 (789)
+|++||++.|+|+++..+...+.||+|......+.+..|+|+|+++|.+
T Consensus 76 ----~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 76 ----KDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred ----CCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 8999999999999999998889999998654434556799999999875
No 46
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.79 E-value=1.5e-18 Score=159.96 Aligned_cols=123 Identities=26% Similarity=0.430 Sum_probs=105.9
Q ss_pred eEEEEEEEEeeCCCCCCC--CCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCc
Q 003882 54 FYLYVRVEKARDLPTNPV--SGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDD 131 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~--~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~ 131 (789)
|.|.|+|++|+||+..+. .+.+||||+|.+++++++|+++++|.||+|||+|.|.+.......|.|+|||++..++++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 579999999999999887 789999999999999999999999999999999999998766789999999999988999
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCC--CccceEEEEEEE
Q 003882 132 YIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDD--RKVKGEVMLAVW 178 (789)
Q Consensus 132 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~--~~~~G~l~l~~~ 178 (789)
+||++.+++.++..... ......||+|++.... ....|+|++++.
T Consensus 81 ~lG~~~i~l~~~~~~~~--~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 81 YLGEFDIALEEVFADGK--TGQSDKWITLKSTRPGKTSVVSGEIHLQFS 127 (128)
T ss_pred cceEEEEEHHHhhcccc--cCccceeEEccCcccCccccccceEEEEEE
Confidence 99999999999985311 1123499999977432 347899999875
No 47
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.79 E-value=3e-18 Score=156.61 Aligned_cols=119 Identities=18% Similarity=0.350 Sum_probs=101.0
Q ss_pred eeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCc
Q 003882 53 MFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNY-KGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDD 131 (789)
Q Consensus 53 ~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~ 131 (789)
...|.|+|++|+||+.. +.+||||+|.+++. ..+|+++ ++.||.|||+|.|.+.......+.|.|||++..++|+
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~ 78 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS 78 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC
Confidence 35799999999999874 47899999999885 4688874 6899999999999875554468999999999999999
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCeeEEcccCCC-CCccceEEEEEEEEe
Q 003882 132 YIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRD-DRKVKGEVMLAVWIG 180 (789)
Q Consensus 132 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~~G~l~l~~~~~ 180 (789)
+||++.++|.++..+...+ .||+|++... .....|+|+++++|.
T Consensus 79 ~iG~v~i~l~~l~~~~~~~-----~W~~L~~~~~~~~~~~G~i~l~l~~~ 123 (126)
T cd08400 79 EIAEVTVQLSKLQNGQETD-----EWYPLSSASPLKGGEWGSLRIRARYS 123 (126)
T ss_pred eEEEEEEEHhHccCCCccc-----EeEEcccCCCCCCCcCcEEEEEEEEE
Confidence 9999999999998876555 9999998753 235689999999986
No 48
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.79 E-value=2.6e-18 Score=156.89 Aligned_cols=118 Identities=31% Similarity=0.498 Sum_probs=103.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCceeE
Q 003882 55 YLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYIG 134 (789)
Q Consensus 55 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~lG 134 (789)
.|.|+|++|++|...+..+.+||||+|++++...+|+++++|.||+|||+|.|.+.......|.|+|||++.++++++||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG 80 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence 38999999999999998889999999999999999999999999999999999997766688999999999999999999
Q ss_pred EEEEEccccCCCCCCCCCCCCeeEEcccCCCC----CccceEEEEEE
Q 003882 135 KVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDD----RKVKGEVMLAV 177 (789)
Q Consensus 135 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~----~~~~G~l~l~~ 177 (789)
++.+++.++......+ .||.|.+.... ....|.|.+.+
T Consensus 81 ~~~~~l~~l~~~~~~~-----~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 81 KVVFSIQTLQQAKQEE-----GWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEHHHcccCCCCC-----CEEECCCCCCCCccccCceEEEEEEe
Confidence 9999999998765444 89999864322 24678888765
No 49
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.79 E-value=1e-18 Score=160.02 Aligned_cols=119 Identities=27% Similarity=0.334 Sum_probs=100.7
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCC-CCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEE-cc--C
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVS-GSCDPYVEVKLGN---YKGKTRHFEKKSNPEWKQVFAFS-KE--K 111 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~-g~~dpyv~v~~~~---~~~~T~~~~~t~nP~wne~f~f~-~~--~ 111 (789)
|..++++.|+... +.|.|+|++|+||+..+.. +.+||||+|.+.+ +++||+++++|.||+|||+|.|. +. +
T Consensus 3 G~l~~~l~y~~~~--~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~ 80 (128)
T cd08388 3 GTLFFSLRYNSEK--KALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQ 80 (128)
T ss_pred eEEEEEEEEECCC--CEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHH
Confidence 4678999999987 9999999999999998875 8999999999964 46799999999999999999994 42 3
Q ss_pred CCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEccc
Q 003882 112 IQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLED 162 (789)
Q Consensus 112 ~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 162 (789)
.....|.++|||++.++++++||++.++|+++......+ ...|.+|++
T Consensus 81 ~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~---~~~~~~~~~ 128 (128)
T cd08388 81 LQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGE---LLVSREIQP 128 (128)
T ss_pred hCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCce---EEEEEeccC
Confidence 345689999999999999999999999999998763221 338888763
No 50
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.79 E-value=1.4e-18 Score=159.91 Aligned_cols=116 Identities=27% Similarity=0.411 Sum_probs=102.2
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccC--
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEK-- 111 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~-- 111 (789)
|..++++.|+... +.|.|+|++|+||+..+..+.+||||+|++.+ .+++|++++++.||+|||+|.|.+..
T Consensus 3 G~l~~~l~y~~~~--~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~ 80 (127)
T cd04030 3 GRIQLTIRYSSQR--QKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEE 80 (127)
T ss_pred eEEEEEEEEeCCC--CEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHH
Confidence 4678999999977 99999999999999999889999999999963 56899999999999999999999843
Q ss_pred CCCceEEEEEEeCCCC--CCCceeEEEEEEccccCCCCCCCCCCCCeeEEcc
Q 003882 112 IQSSVLEVFVRDREIV--GRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLE 161 (789)
Q Consensus 112 ~~~~~l~v~V~d~~~~--~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 161 (789)
+....|.|.|||++.+ +++++||++.++|.++..+.... .||+|+
T Consensus 81 l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~-----~W~~L~ 127 (127)
T cd04030 81 LKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFT-----QWYDLT 127 (127)
T ss_pred hcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCcc-----ceEECc
Confidence 3457999999999875 68999999999999997765544 999985
No 51
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.78 E-value=1.5e-18 Score=159.18 Aligned_cols=115 Identities=36% Similarity=0.578 Sum_probs=99.8
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccC--
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEK-- 111 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~-- 111 (789)
|..++++.|+... ++|.|+|++|+||+..+..+.+||||+|++.+ .+++|+++++|.||+|||+|.|.+..
T Consensus 3 G~l~~~l~~~~~~--~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~ 80 (125)
T cd04031 3 GRIQIQLWYDKVT--SQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRE 80 (125)
T ss_pred EEEEEEEEEeCCC--CEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHH
Confidence 5678999999988 99999999999999998888999999999975 46799999999999999999998633
Q ss_pred -CCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcc
Q 003882 112 -IQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLE 161 (789)
Q Consensus 112 -~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 161 (789)
.....|.|+|||++.++++++||++.++|.+...+. . +.||+|+
T Consensus 81 ~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~~~-~-----~~W~~L~ 125 (125)
T cd04031 81 TLKERTLEVTVWDYDRDGENDFLGEVVIDLADALLDD-E-----PHWYPLQ 125 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeeEEEEecccccccC-C-----cceEECc
Confidence 245789999999999989999999999999943322 2 2899985
No 52
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.78 E-value=2e-18 Score=156.53 Aligned_cols=113 Identities=28% Similarity=0.435 Sum_probs=99.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCce
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGN---YKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDY 132 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~ 132 (789)
|.|+|++|++|+..+..+.+||||++++++ ++++|+++++|.||+|||+|.|.+.......|.|+|||++.+ ++++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 789999999999998888999999999974 578999999999999999999998766567899999999998 8999
Q ss_pred eEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEE
Q 003882 133 IGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWI 179 (789)
Q Consensus 133 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 179 (789)
||++.+++.++..+...+ .|++|.+. ..|+|.+++.+
T Consensus 81 iG~~~~~l~~l~~g~~~~-----~~~~L~~~-----~~g~l~~~~~~ 117 (119)
T cd04036 81 LGTVLFDVSKLKLGEKVR-----VTFSLNPQ-----GKEELEVEFLL 117 (119)
T ss_pred cEEEEEEHHHCCCCCcEE-----EEEECCCC-----CCceEEEEEEe
Confidence 999999999998876555 89999875 26888888765
No 53
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.78 E-value=3.2e-19 Score=198.80 Aligned_cols=405 Identities=17% Similarity=0.174 Sum_probs=257.3
Q ss_pred cceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccC---------C
Q 003882 42 RATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEK---------I 112 (789)
Q Consensus 42 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~---------~ 112 (789)
.+|-.++.+ ..+.+++.|.+|++|.+.+..+.+|||+.|.+-++.+.|-++.+|+||.||++..|.-.+ .
T Consensus 195 ~~Sc~~~e~-~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~ 273 (1105)
T KOG1326|consen 195 EFSCYLSEV-IHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLK 273 (1105)
T ss_pred ceEEecchh-hhhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhc
Confidence 455555544 357899999999999999999999999999999999999999999999999999997211 1
Q ss_pred CCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEeecCCCcCCccCC
Q 003882 113 QSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGTQADEAFPEAWH 192 (789)
Q Consensus 113 ~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~d~~~~~~~~ 192 (789)
....+.++|||.++.+.++|+|+......-... .+. -.|+++.... ...|++.++..+...+. +-.|-
T Consensus 274 ~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~~~-~p~-----lkw~p~~rg~---~l~gd~l~a~eliq~~~---~i~~p 341 (1105)
T KOG1326|consen 274 NPPIRVFEVYDLDRSGINEFKGRKKQRPYVMVQ-CPA-----LKWVPTMRGA---FLDGDVLIAAELIQIGK---PIPQP 341 (1105)
T ss_pred CCCeEEEEeehhhhhchHHhhcccccceEEEec-CCc-----cceEEeeccc---ccccchhHHHHHHhhcC---CCCCC
Confidence 246789999999999999999998875443333 122 2799988764 34677766653332221 01111
Q ss_pred CCCcccCCCccccccccccccCccEEEEEEEEEeecCCCCCCCCCCCeEEEEEECCeEEeeecccCCCCCCccCceeEEE
Q 003882 193 SDAATVEGEGVFNIRSKVYVSPKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTRTTNPLWNEDLIFV 272 (789)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~v~~ar~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~ 272 (789)
..... ......-.+.....+.+.+.|-...-|++..........|-+.+.+|++..++..+.+.-.||.++..+.+.
T Consensus 342 ~~~~~---~~~~~vp~~iRp~~q~~~~evl~wgLrn~k~~~m~~~~~P~~~~e~g~e~v~s~~I~~~k~npnf~s~~~~~ 418 (1105)
T KOG1326|consen 342 PPQRE---IIFSLVPKKIRPKTQIGKAELLMWGLRNPKKSGMASTFSPALLVEFGGERVSSFSIFNRKKNPNFPSRVLGR 418 (1105)
T ss_pred Ccccc---cceeccccCCCcceeeeeeehhhhhhcccccccccccCCcceeEeeCCceEeeeeehhhhhCCCCceeEEEE
Confidence 11000 000000011111233334444444456665555556678999999999999998887767899998776554
Q ss_pred e-e----CCCCCeEEEEEEEccCCCCCCceEEEEEec-cccccc----------c--C-------C-----CCCcceeEE
Q 003882 273 A-A----EPFEEQLVLTVENKVTPAKDEPLGRLRLSL-NVIERR----------L--D-------H-----RPVHSKWFN 322 (789)
Q Consensus 273 ~-~----~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l-~~l~~~----------~--~-------~-----~~~~~~w~~ 322 (789)
. . +.....+.++|.|.+.++....+|+|.+.- ....-+ . + . ....+.|++
T Consensus 419 ~v~lpd~e~Y~ppl~akvvd~~~fg~~~v~g~c~i~~l~nf~c~p~~~~~~~Pq~~~d~~~~~~~~~~~~~~~~~~~~l~ 498 (1105)
T KOG1326|consen 419 LVILPDEELYMPPLNAKVVDLRQFGRMEVVGQCKILSLYNFFCDPSAVNSITPQFASDPVSIMMGSTDNEIRHCNSSTLP 498 (1105)
T ss_pred EEeccchHhhCccceeEEEecccccceeehhhhcchhhhhhccCchhhcccCcCCCCCchhhhcCCchhhhhhccccCCC
Confidence 3 1 224558999999999999999999997752 211100 0 0 0 000111222
Q ss_pred ccccCc--------------ccchhcc------c-------------ccccccc----eEEEEEEEcCcc----------
Q 003882 323 LEKFGF--------------GALELDK------R-------------HELKFSS----RIHLRVCLEGAY---------- 355 (789)
Q Consensus 323 L~~~~~--------------~~~~g~~------~-------------~~~~~~G----~i~l~i~~~~~~---------- 355 (789)
..+... ++.+.++ + ...++.| -+...++ .|..
T Consensus 499 ~~~~~~~~e~~~~~w~k~~~~~~~~~k~~~~~~K~~~~LKiyn~ele~v~ef~~l~D~~~~f~l~-rG~~~~e~~e~~Iv 577 (1105)
T KOG1326|consen 499 ASPHEDEEEREVDWWGKFYPSAEENAKWEVYEHKINVTLKIYNMELEMVAEFRGLQDWAVTFKLY-RGKEGLECLEQQIV 577 (1105)
T ss_pred CCccccccceehhhhhhccccccccccccccccccceEEEEehhhhhhHHHHhhhhhccceeEee-eccccCCCcccchh
Confidence 211110 0000000 0 0000111 0011111 1110
Q ss_pred ----------cccCCcccc-----cCCCCcccccccCCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEE--E
Q 003882 356 ----------HVMDESTMY-----ISDQRPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKW--V 418 (789)
Q Consensus 356 ----------~~~d~~~~~-----~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~--~ 418 (789)
++..++... ..+++.. .|-.-.++|.|++|.+|.+. |++|.+|||+.+.+|++. -
T Consensus 578 g~fKgl~rIyp~~~~~~~p~~pr~~~~~~~~-----~pi~~LvrVyvv~A~~L~p~---D~ng~adpYv~l~lGk~~~~d 649 (1105)
T KOG1326|consen 578 GEFKGLFRIYPVPRNPSSPAPPRHFLDLPKE-----EPIKCLVRVYVVEAFSLQPS---DGNGDADPYVKLLLGKKRTLD 649 (1105)
T ss_pred hhhhcceeeecCCCccCCCCChhhhhccccc-----CcceeeEEEEEEEeeecccc---CCCCCcCceeeeeeccchhhh
Confidence 000000000 0011111 12335889999999999987 678999999999999987 5
Q ss_pred eeccccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCCCCCCCCCCCccEEEEEECcc
Q 003882 419 RTRTLVDNFNPKWNEQYTWEVYDP-CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLST 476 (789)
Q Consensus 419 ~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~ 476 (789)
++..+.+|+||+|++.|.+....| ...++++|||+|..+ .|+.||...|+|..
T Consensus 650 ~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~-----~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 650 RAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEA-----QDEKIGETTIDLEN 703 (1105)
T ss_pred hhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccc-----ccchhhceehhhhh
Confidence 666788999999999999998887 568999999999986 89999999999876
No 54
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.78 E-value=3e-18 Score=156.98 Aligned_cols=120 Identities=21% Similarity=0.338 Sum_probs=102.9
Q ss_pred EEEEEEEccCCCCCccCCCCCCcCcEEEEEEC--CEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCC
Q 003882 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG--LKWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGSG 460 (789)
Q Consensus 383 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~--~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~ 460 (789)
|.|+|++|+||+. ..|.+||||++.++ .+.+||+++++|+||.|||.|.|.+......|.|+|||++..+
T Consensus 1 l~v~v~~A~~L~~-----~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~--- 72 (126)
T cd08678 1 LLVKNIKANGLSE-----AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKS--- 72 (126)
T ss_pred CEEEEEEecCCCC-----CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCC---
Confidence 5799999999986 24789999999997 4679999999999999999999999766778999999999875
Q ss_pred CCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEEeec
Q 003882 461 TKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRFTCL 512 (789)
Q Consensus 461 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~ 512 (789)
+|++||++.+++.++..+.....|++|......+.+..|+|++++.|.+.
T Consensus 73 --~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 73 --DSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred --CCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 79999999999999998877789999975433334557999999998754
No 55
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.78 E-value=3.9e-18 Score=156.25 Aligned_cols=118 Identities=23% Similarity=0.359 Sum_probs=103.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC--eeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCcee
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGN--YKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYI 133 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~--~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~l 133 (789)
|.|+|++|+||+. ..|.+||||+++++. ++++|+++.+|.||+|||+|.|.+... ...|.|+|||++..+++++|
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~~~~~~l 77 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPN-SKELLFEVYDNGKKSDSKFL 77 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCC-CCEEEEEEEECCCCCCCceE
Confidence 6799999999987 578999999999984 578999999999999999999998643 57899999999999899999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeeEEcccCCCC-CccceEEEEEEEEee
Q 003882 134 GKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDD-RKVKGEVMLAVWIGT 181 (789)
Q Consensus 134 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~~G~l~l~~~~~~ 181 (789)
|++.+++.++....... .|++|+...+. ....|+|.+++.|..
T Consensus 78 G~~~i~l~~l~~~~~~~-----~~~~L~~~~~~~~~~~G~l~l~~~~~~ 121 (126)
T cd08678 78 GLAIVPFDELRKNPSGR-----QIFPLQGRPYEGDSVSGSITVEFLFME 121 (126)
T ss_pred EEEEEeHHHhccCCcee-----EEEEecCCCCCCCCcceEEEEEEEEec
Confidence 99999999999876554 89999976432 357899999999864
No 56
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.78 E-value=3.4e-18 Score=154.50 Aligned_cols=113 Identities=23% Similarity=0.441 Sum_probs=101.4
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCCCCCC
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDP-CTVITLGVFDNCHLGGSG 460 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~~~~~~ 460 (789)
.++|.|++|+||+.++. .+.+||||+++++++..+|+++++|.||.|||.|.|.+.++ ...|.|+|||++..+
T Consensus 1 ~~~V~v~~a~~L~~~~~---~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~--- 74 (116)
T cd08376 1 VVTIVLVEGKNLPPMDD---NGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGK--- 74 (116)
T ss_pred CEEEEEEEEECCCCCCC---CCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCC---
Confidence 37899999999998743 47899999999999999999999999999999999999875 689999999999875
Q ss_pred CCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEE
Q 003882 461 TKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRF 509 (789)
Q Consensus 461 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 509 (789)
+|++||++.++|+++..+.....|++|.. ..|+|++.+.|
T Consensus 75 --~~~~iG~~~~~l~~l~~~~~~~~w~~L~~-------~~G~~~~~~~~ 114 (116)
T cd08376 75 --KDEFIGRCEIDLSALPREQTHSLELELED-------GEGSLLLLLTL 114 (116)
T ss_pred --CCCeEEEEEEeHHHCCCCCceEEEEEccC-------CCcEEEEEEEe
Confidence 88999999999999999888999999962 14999998765
No 57
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.78 E-value=1.8e-18 Score=160.98 Aligned_cols=103 Identities=28% Similarity=0.488 Sum_probs=89.6
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEcc---------------CCCCc
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKE---------------KIQSS 115 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~---------------~~~~~ 115 (789)
|.|+|++|+||+. .+|.+||||+|++.+ ++++|+++++|.||+|||+|.|.+. +....
T Consensus 2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred EEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence 8999999999998 478999999999987 5679999999999999999999984 22346
Q ss_pred eEEEEEEeCCCCCCCceeEEEEEEccccCCC-CCCCCCCCCeeEEcccCCC
Q 003882 116 VLEVFVRDREIVGRDDYIGKVVFDMNEVPTR-VPPDSPLAPQWYRLEDRRD 165 (789)
Q Consensus 116 ~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~~~w~~L~~~~~ 165 (789)
.|.|.|||++.+++|+|||++.|++..+..+ ... ..||+|++...
T Consensus 80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~-----~~W~~L~~~~~ 125 (148)
T cd04010 80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSH-----QAWYFLQPREE 125 (148)
T ss_pred EEEEEEEcCCCCCCCceeEEEEEecccccccCCcC-----cceeecCCccc
Confidence 8999999999988999999999999999986 333 38999987753
No 58
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.78 E-value=2.1e-18 Score=158.08 Aligned_cols=117 Identities=32% Similarity=0.480 Sum_probs=102.8
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CeeeeeccccCCCCCeeccEEEEEcc---CC
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLG---NYKGKTRHFEKKSNPEWKQVFAFSKE---KI 112 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~---~~~~~T~~~~~t~nP~wne~f~f~~~---~~ 112 (789)
|..++++.|+... +.|.|+|++|+||+..+..+.+||||+|.+. .+..+|+++++|.||+|||+|.|.+. ..
T Consensus 3 G~l~~~l~y~~~~--~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l 80 (125)
T cd08386 3 GRIQFSVSYDFQE--STLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKL 80 (125)
T ss_pred cEEEEEEEECCCC--CEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHh
Confidence 5688999999877 8999999999999999988999999999994 35789999999999999999999742 23
Q ss_pred CCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEccc
Q 003882 113 QSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLED 162 (789)
Q Consensus 113 ~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 162 (789)
....|.++|||++.++++++||++.+++.++..+...+ .|+.|.+
T Consensus 81 ~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~-----~W~~l~~ 125 (125)
T cd08386 81 QQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQT-----FWKDLKP 125 (125)
T ss_pred CCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcc-----eEEecCC
Confidence 45689999999999999999999999999999766555 9999863
No 59
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.78 E-value=1.5e-18 Score=156.38 Aligned_cols=111 Identities=22% Similarity=0.387 Sum_probs=92.9
Q ss_pred cccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccCC-C
Q 003882 40 SERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEKI-Q 113 (789)
Q Consensus 40 ~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~~-~ 113 (789)
..++++.| .. +.|.|+|++|+||+..+ .|.+||||+|++.+ .++||+++++|.||+|||+|.|.+... .
T Consensus 2 ~l~l~~~~--~~--~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~ 76 (119)
T cd08685 2 QLKLSIEG--QN--RKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDY 76 (119)
T ss_pred EEEEEEEE--cC--CEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHh
Confidence 45566666 34 78999999999999998 78999999999976 356999999999999999999998432 2
Q ss_pred CceEEEEEEeCCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeeEEc
Q 003882 114 SSVLEVFVRDREIVG-RDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRL 160 (789)
Q Consensus 114 ~~~l~v~V~d~~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 160 (789)
...|.|+|||++..+ ++++||++.|++.++..+...+ .||.|
T Consensus 77 ~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~-----~Wy~l 119 (119)
T cd08685 77 QKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEIS-----GWYYL 119 (119)
T ss_pred CCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCcccc-----ceEeC
Confidence 357999999999875 4789999999999998665444 99986
No 60
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.77 E-value=5.8e-18 Score=153.82 Aligned_cols=118 Identities=25% Similarity=0.447 Sum_probs=102.4
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCC
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGSG 460 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~ 460 (789)
|.|+|+|++|+||+.++ ..+.+||||+|.+++..++|++++++.||.|||.|.|.+.+....|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~---~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~--- 74 (119)
T cd08377 1 GFLQVKVIRASGLAAAD---IGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDK--- 74 (119)
T ss_pred CEEEEEEEeeeCCCCCC---CCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCC---
Confidence 78999999999999874 347899999999999999999999999999999999999877789999999998865
Q ss_pred CCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEE
Q 003882 461 TKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRF 509 (789)
Q Consensus 461 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 509 (789)
++++||++.+++.++..+. ..||+|..... ..+..|+|.++++|
T Consensus 75 --~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~-~~~~~G~i~l~~~~ 118 (119)
T cd08377 75 --KPEFLGKVAIPLLSIKNGE--RKWYALKDKKL-RTRAKGSILLEMDV 118 (119)
T ss_pred --CCceeeEEEEEHHHCCCCC--ceEEECcccCC-CCceeeEEEEEEEe
Confidence 7899999999999998665 68999975432 22357999999876
No 61
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.77 E-value=2.5e-18 Score=157.22 Aligned_cols=115 Identities=22% Similarity=0.394 Sum_probs=100.7
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCC-CCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccC-
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNP-VSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEK- 111 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~-~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~- 111 (789)
|..++++.|+... +.|.|+|++|+||+..+ ..+.+||||+|++.+ .+++|++++++.||+|||+|.|.+..
T Consensus 1 G~i~~~l~y~~~~--~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~ 78 (123)
T cd08521 1 GEIEFSLSYNYKT--GSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKS 78 (123)
T ss_pred CeEEEEEEEeCCC--CEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHH
Confidence 3578999999877 99999999999999988 678999999999853 35799999999999999999999854
Q ss_pred -CCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEc
Q 003882 112 -IQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRL 160 (789)
Q Consensus 112 -~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 160 (789)
.....|.|+|||++.++++++||++.++|.++..+...+ .||+|
T Consensus 79 ~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~-----~w~~l 123 (123)
T cd08521 79 QLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQS-----EWYPL 123 (123)
T ss_pred HhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCc-----cEEEC
Confidence 235789999999999999999999999999997665444 89987
No 62
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.77 E-value=7.2e-18 Score=156.33 Aligned_cols=123 Identities=25% Similarity=0.453 Sum_probs=101.4
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCC---------CCceEEEEEEeC
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKI---------QSSVLEVFVRDR 124 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~---------~~~~l~v~V~d~ 124 (789)
++|+|+|++|++|+..+..|.+||||+|.+++++++|+++++|.||+|||+|.|.+..+ ....|.|+|||+
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 57999999999999999999999999999999999999999999999999999985322 125799999999
Q ss_pred CCCCCCceeEEEEE-EccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEee
Q 003882 125 EIVGRDDYIGKVVF-DMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGT 181 (789)
Q Consensus 125 ~~~~~d~~lG~~~i-~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 181 (789)
+..++|++||++.+ ++..+.... .....++|++|.... ...|+|++++.+..
T Consensus 81 d~~~~d~~iG~~~i~~~~~~~~~~--~~~~~~~W~~L~~~~---~~~Geil~~~~~~~ 133 (135)
T cd04017 81 DSVGKDEFLGRSVAKPLVKLDLEE--DFPPKLQWFPIYKGG---QSAGELLAAFELIE 133 (135)
T ss_pred cCCCCCccceEEEeeeeeecccCC--CCCCCceEEEeecCC---CchhheeEEeEEEE
Confidence 99999999999997 444444321 233455999997543 36899999998763
No 63
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.77 E-value=6.5e-18 Score=153.43 Aligned_cols=118 Identities=29% Similarity=0.496 Sum_probs=101.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCceeE
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNY-KGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYIG 134 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~lG 134 (789)
|.|+|++|++|+..+..|.+||||++.+++. ..+|+++.+|.||+|||.|.|.+... ...|.|+|||++.+++|++||
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~~~~d~~iG 80 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPG-FHTVSFYVLDEDTLSRDDVIG 80 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCC-CCEEEEEEEECCCCCCCCEEE
Confidence 8899999999999999999999999999886 46999999999999999999998654 479999999999999999999
Q ss_pred EEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEE
Q 003882 135 KVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVW 178 (789)
Q Consensus 135 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~ 178 (789)
++.+++..+..... ....|++|++..+.....|+|++.+.
T Consensus 81 ~~~~~~~~~~~~~~----~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 81 KVSLTREVISAHPR----GIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEcHHHhccCCC----CCCcEEECeeeCCCCccccEEEEEEE
Confidence 99999988875321 12389999876544467899988864
No 64
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.77 E-value=4.4e-18 Score=156.80 Aligned_cols=123 Identities=23% Similarity=0.437 Sum_probs=103.4
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeC-CCceEEEEEEeCCCCCCC
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYD-PCTVITLGVFDNCHLGGS 459 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~-~~~~l~v~v~d~~~~~~~ 459 (789)
|.|+|.|++|+||+..+. ++.+.+||||+|.++++.++|++++++.||.|||.|.|.+.+ ....|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~-~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~-- 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDR-SGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA-- 77 (128)
T ss_pred CEEEEEEEEeeCCCcccC-CCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC--
Confidence 789999999999998743 125789999999999999999999999999999999999997 4789999999999875
Q ss_pred CCCCCCccEEEEEECccccc---CceEeeeEeeeecCC-CCCccceEEEEEEEE
Q 003882 460 GTKPDSRIGKVRIRLSTLEA---DRIYTHSYPLLVLNP-SGVKKMGELQLAVRF 509 (789)
Q Consensus 460 ~~~~d~~lG~~~i~l~~l~~---~~~~~~~~~L~~~~~-~g~~~~G~i~l~~~f 509 (789)
.+++||++.|++.++.. ......||+|..... ......|+|+|++.|
T Consensus 78 ---~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 78 ---GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred ---CCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 78999999999999873 344689999976532 123357999998753
No 65
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.77 E-value=4.1e-18 Score=156.41 Aligned_cols=120 Identities=31% Similarity=0.496 Sum_probs=100.9
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCC----CceEEEEEEeCCCCC
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDP----CTVITLGVFDNCHLG 457 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~----~~~l~v~v~d~~~~~ 457 (789)
.|+|+|++|+||++.+ ..|.+||||+|.++++..||++++++.||.|||.|.|.+.++ ...|.|+|||++.++
T Consensus 1 ~L~V~vi~A~~L~~~d---~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~ 77 (127)
T cd04022 1 KLVVEVVDAQDLMPKD---GQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG 77 (127)
T ss_pred CeEEEEEEeeCCCCCC---CCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc
Confidence 3789999999999874 457899999999999999999999999999999999999864 358999999988762
Q ss_pred CCCCCCCCccEEEEEECcccc-cCceEeeeEeeeecCCCCCccceEEEEEEEE
Q 003882 458 GSGTKPDSRIGKVRIRLSTLE-ADRIYTHSYPLLVLNPSGVKKMGELQLAVRF 509 (789)
Q Consensus 458 ~~~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 509 (789)
..+++||++.|+++++. .+.....||+|..... ..+.+|+|+|++.|
T Consensus 78 ----~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~-~~~~~G~l~l~~~~ 125 (127)
T cd04022 78 ----RRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGL-FSRVRGEIGLKVYI 125 (127)
T ss_pred ----CCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCC-CCCccEEEEEEEEE
Confidence 25889999999999998 4666789999975432 22357999998865
No 66
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.77 E-value=6.1e-18 Score=154.23 Aligned_cols=114 Identities=28% Similarity=0.504 Sum_probs=100.2
Q ss_pred eEEEEEEEEeeCCCCCCC------CCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCC
Q 003882 54 FYLYVRVEKARDLPTNPV------SGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIV 127 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~------~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~ 127 (789)
|.|.|+|++|+||+..+. .|.+||||+|+++++.++|+++++|.||+|||+|.|.+.+.....|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 579999999999998874 36899999999999999999999999999999999999776678999999999987
Q ss_pred CCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEE
Q 003882 128 GRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVW 178 (789)
Q Consensus 128 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~ 178 (789)
++++||.+.+++.++..+...+ .||+|++. ..|+|++.+.
T Consensus 81 -~~~~iG~~~i~l~~l~~~~~~~-----~w~~L~~~-----~~G~~~~~~~ 120 (121)
T cd08391 81 -KDDFLGRLSIDLGSVEKKGFID-----EWLPLEDV-----KSGRLHLKLE 120 (121)
T ss_pred -CCCcEEEEEEEHHHhcccCccc-----eEEECcCC-----CCceEEEEEe
Confidence 8999999999999998765444 99999864 3688888764
No 67
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.77 E-value=4.4e-18 Score=151.06 Aligned_cols=102 Identities=24% Similarity=0.375 Sum_probs=89.2
Q ss_pred eeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCce
Q 003882 53 MFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDY 132 (789)
Q Consensus 53 ~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~ 132 (789)
|+.|.|+|++|++|+..+ ..||||++.+++++.+|+++++ .||+|||+|.|.+.+.. ..|.|+|||++.+ +|++
T Consensus 1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~-~~L~v~V~dkd~~-~DD~ 74 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLD-LGLVIELWNKGLI-WDTL 74 (127)
T ss_pred CceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCC-CEEEEEEEeCCCc-CCCc
Confidence 578999999999997643 5699999999999999999988 59999999999998764 4599999999975 8999
Q ss_pred eEEEEEEccccCCCCCCCCCCCCeeEEcccC
Q 003882 133 IGKVVFDMNEVPTRVPPDSPLAPQWYRLEDR 163 (789)
Q Consensus 133 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 163 (789)
||++.|+|.++..+. .++.++||+|+..
T Consensus 75 lG~v~i~L~~v~~~~---~~~~~~Wy~L~~~ 102 (127)
T cd08394 75 VGTVWIPLSTIRQSN---EEGPGEWLTLDSE 102 (127)
T ss_pred eEEEEEEhHHcccCC---CCCCCccEecChH
Confidence 999999999999774 3556799999854
No 68
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.77 E-value=5.4e-18 Score=154.57 Aligned_cols=117 Identities=27% Similarity=0.525 Sum_probs=101.6
Q ss_pred cEEEEEEEEccCCCCCccCC---CCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeC-CCceEEEEEEeCCCC
Q 003882 381 GILEVGILSAQGLLPMKTRD---GRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYD-PCTVITLGVFDNCHL 456 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~---~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~-~~~~l~v~v~d~~~~ 456 (789)
|.|+|+|++|+||+.++... ..|.+||||+|+++++.++|++++++.||.|||.|.|.+.+ +...|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 68999999999999875421 13689999999999999999999999999999999999986 478999999999874
Q ss_pred CCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEE
Q 003882 457 GGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRF 509 (789)
Q Consensus 457 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 509 (789)
++++||++.++++++..+.....||+|... ..|+|+++++|
T Consensus 81 ------~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~~~~~ 121 (121)
T cd08391 81 ------KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHLKLEW 121 (121)
T ss_pred ------CCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEEEEeC
Confidence 688999999999999988778999999632 45999998764
No 69
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.77 E-value=5.3e-18 Score=153.82 Aligned_cols=100 Identities=23% Similarity=0.312 Sum_probs=89.1
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEEC-----CEEEeeccccCCCCCccccEEEEEEeC----CCceEEEEEE
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG-----LKWVRTRTLVDNFNPKWNEQYTWEVYD----PCTVITLGVF 451 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~wne~~~f~v~~----~~~~l~v~v~ 451 (789)
|.|.|.|++|+||++++ .+.+||||+|++. ..+.||++++++.||.|||+|.|++.. ....|.|+||
T Consensus 13 ~~L~V~Vi~A~~L~~~~----~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~ 88 (122)
T cd08381 13 GTLFVMVMHAKNLPLLD----GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVW 88 (122)
T ss_pred CEEEEEEEEeeCCCCCC----CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEE
Confidence 59999999999999874 4789999999995 346899999999999999999999832 3579999999
Q ss_pred eCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEee
Q 003882 452 DNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPL 489 (789)
Q Consensus 452 d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 489 (789)
|++.++ ++++||++.|+|+++..++....||+|
T Consensus 89 d~d~~~-----~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 89 SHDSLV-----ENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred eCCCCc-----CCcEEEEEEEeccccccCCCccceEEC
Confidence 999875 789999999999999988878999987
No 70
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.76 E-value=4.7e-18 Score=150.26 Aligned_cols=102 Identities=25% Similarity=0.468 Sum_probs=91.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCceeEE
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYIGK 135 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~lG~ 135 (789)
|.|+|++|+||+..+..+.+||||+|+++++.++|+++++|.||+|||+|.|.+.++..+.|.|+|+|++. +++||+
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG~ 78 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLGS 78 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccEE
Confidence 89999999999999888999999999999999999999999999999999999988767899999999986 889999
Q ss_pred EEEEccccCCCCCCCCCCCCeeEEcccC
Q 003882 136 VVFDMNEVPTRVPPDSPLAPQWYRLEDR 163 (789)
Q Consensus 136 ~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 163 (789)
+.++|.++..+. ....+.||+|++.
T Consensus 79 ~~i~l~~l~~~~---~~~~~~w~~L~~~ 103 (105)
T cd04050 79 LTLPLSELLKEP---DLTLDQPFPLDNS 103 (105)
T ss_pred EEEEHHHhhccc---cceeeeeEecCCC
Confidence 999999998763 1234599999864
No 71
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.76 E-value=1.4e-17 Score=157.96 Aligned_cols=119 Identities=24% Similarity=0.441 Sum_probs=102.8
Q ss_pred eEEEEEEEEeeCCCCCC------------------------------CCCCCCcEEEEEECCee-eeeccccCCCCCeec
Q 003882 54 FYLYVRVEKARDLPTNP------------------------------VSGSCDPYVEVKLGNYK-GKTRHFEKKSNPEWK 102 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~------------------------------~~g~~dpyv~v~~~~~~-~~T~~~~~t~nP~wn 102 (789)
|.|.|+|.+|++|+++| ..|.+||||+|.+++.+ .||++++++.||+||
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~Wn 86 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWN 86 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccc
Confidence 89999999999999987 35678999999999854 699999999999999
Q ss_pred cEEEEEccCCCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCC-ccceEEEEEEEE
Q 003882 103 QVFAFSKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDR-KVKGEVMLAVWI 179 (789)
Q Consensus 103 e~f~f~~~~~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~ 179 (789)
|+|.|.+... .+.|.|.|||++.++ +++||++.++++++..+...+ .||+|.+..+.. ...|.|++++.|
T Consensus 87 E~F~~~~~~~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~-----~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 87 ESFHIYCAHY-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVE-----GWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred eEEEEEccCC-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcc-----eEEECcCCCCCCCCCCCEEEEEEEE
Confidence 9999998765 478999999999874 689999999999998766555 999998875543 446899999877
No 72
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.76 E-value=8.9e-18 Score=153.06 Aligned_cols=103 Identities=18% Similarity=0.268 Sum_probs=90.3
Q ss_pred ccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEEC-----CEEEeeccccCCCCCccccEEEEEEeC---CCceEEEEEE
Q 003882 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG-----LKWVRTRTLVDNFNPKWNEQYTWEVYD---PCTVITLGVF 451 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v~v~ 451 (789)
.|.|.|.|++|+||++.+. ..+.+||||+|.+. ..+.||++++++.||.|||.|.|.+.. ....|.|+||
T Consensus 14 ~~~L~V~Vi~a~~L~~~~~--~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~ 91 (125)
T cd04029 14 TQSLNVHVKECRNLAYGDE--AKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVW 91 (125)
T ss_pred CCeEEEEEEEecCCCccCC--CCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence 4799999999999998742 25789999999883 235899999999999999999999875 3568999999
Q ss_pred eCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEee
Q 003882 452 DNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPL 489 (789)
Q Consensus 452 d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 489 (789)
|++.++ ++++||.+.|+|.++...+..+.||||
T Consensus 92 d~~~~~-----~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 92 HYDRFG-----RNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred ECCCCC-----CCcEEEEEEEeCCcccccCCcccEEEC
Confidence 999876 889999999999999998889999998
No 73
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.76 E-value=7.2e-18 Score=154.13 Aligned_cols=117 Identities=29% Similarity=0.391 Sum_probs=103.2
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCC-CCCCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEEccCC--
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNP-VSGSCDPYVEVKLGN---YKGKTRHFEKKSNPEWKQVFAFSKEKI-- 112 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~-~~g~~dpyv~v~~~~---~~~~T~~~~~t~nP~wne~f~f~~~~~-- 112 (789)
|...+++.|+... +.|.|+|++|+||+..+ ..+.+||||+|++.+ ..++|++++++.||+|||+|.|.+...
T Consensus 1 G~l~~~l~y~~~~--~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l 78 (123)
T cd08390 1 GRLWFSVQYDLEE--EQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKEL 78 (123)
T ss_pred CEEEEEEEECCCC--CEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHh
Confidence 4578999999988 89999999999999988 678899999999853 467999999999999999999998543
Q ss_pred CCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEccc
Q 003882 113 QSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLED 162 (789)
Q Consensus 113 ~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 162 (789)
....|.|+|||++..+++++||++.++|.++......+ .|++|++
T Consensus 79 ~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~-----~w~~L~~ 123 (123)
T cd08390 79 QRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGV-----VWRDLEP 123 (123)
T ss_pred cccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCce-----EEEeCCC
Confidence 34689999999999888999999999999999877655 9999874
No 74
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.76 E-value=6.3e-18 Score=151.19 Aligned_cols=106 Identities=27% Similarity=0.403 Sum_probs=93.5
Q ss_pred ceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCC----CCceEEEEEEeCCCC
Q 003882 52 QMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKI----QSSVLEVFVRDREIV 127 (789)
Q Consensus 52 ~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~----~~~~l~v~V~d~~~~ 127 (789)
+.+.|.|+|++|++|+ +|.+||||++++++++++|++++++.||.|||+|.|.+... ....|.|+|||++.+
T Consensus 2 ~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~ 77 (111)
T cd04011 2 QDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL 77 (111)
T ss_pred CcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence 4589999999999998 57899999999999999999999999999999999997543 246899999999999
Q ss_pred CCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccC
Q 003882 128 GRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDR 163 (789)
Q Consensus 128 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 163 (789)
+++++||++.++|+++..+.. +.+...|++|.++
T Consensus 78 ~~~~~iG~~~i~l~~v~~~~~--~~~~~~w~~L~~~ 111 (111)
T cd04011 78 RSDTLIGSFKLDVGTVYDQPD--HAFLRKWLLLTDP 111 (111)
T ss_pred ccCCccEEEEECCccccCCCC--CcceEEEEEeeCc
Confidence 899999999999999987633 4567799999863
No 75
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.76 E-value=1.3e-17 Score=154.18 Aligned_cols=105 Identities=20% Similarity=0.323 Sum_probs=90.9
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE--CC---EEEeeccccCCCCCccccEEEEEEeCCCceEEEEEE-eCC
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY--GL---KWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVF-DNC 454 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~--~~---~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~-d~~ 454 (789)
|.|.|.|++|+||++++ +..|.+||||++++ ++ .+.||+++++|+||+|||.|.|.+......|.|+|| |++
T Consensus 29 ~~L~V~Vi~ArnL~~~~--~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~ 106 (146)
T cd04028 29 GQLEVEVIRARGLVQKP--GSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYG 106 (146)
T ss_pred CEEEEEEEEeeCCCccc--CCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCC
Confidence 69999999999998764 23578999999999 33 368999999999999999999999866779999999 566
Q ss_pred CCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeec
Q 003882 455 HLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVL 492 (789)
Q Consensus 455 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 492 (789)
.++ ++++||.+.|+|+++..+.....||+|...
T Consensus 107 ~~~-----~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 107 RMD-----KKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCC-----CCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 654 789999999999999888888999999743
No 76
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.76 E-value=6.5e-18 Score=152.99 Aligned_cols=113 Identities=26% Similarity=0.330 Sum_probs=97.6
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCCCCCC
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDP-CTVITLGVFDNCHLGGSG 460 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~~~~~~ 460 (789)
.|.|+|++|+||+.+ .+||||++.++++..||++++++.||+|||.|.|.+.++ ...|.|+|||++..
T Consensus 1 ~L~V~Vi~a~~L~~~-------~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~---- 69 (121)
T cd08378 1 YLYVRVVKARGLPAN-------SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA---- 69 (121)
T ss_pred CEEEEEEEecCCCcc-------cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC----
Confidence 488999999999864 689999999999999999999999999999999998874 67899999999875
Q ss_pred CCCCCccEEEEEECcccccCc-----eEeeeEeeeecCCCCCccceEEEEEEEE
Q 003882 461 TKPDSRIGKVRIRLSTLEADR-----IYTHSYPLLVLNPSGVKKMGELQLAVRF 509 (789)
Q Consensus 461 ~~~d~~lG~~~i~l~~l~~~~-----~~~~~~~L~~~~~~g~~~~G~i~l~~~f 509 (789)
.+++||++.++++++..++ ....||+|..... .+..|+|+|.+.|
T Consensus 70 --~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~--~~~~G~i~l~~~~ 119 (121)
T cd08378 70 --KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG--GRVGGELMLAVWF 119 (121)
T ss_pred --cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC--CccceEEEEEEEe
Confidence 6889999999999987532 3569999976532 4457999999977
No 77
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.75 E-value=1.4e-17 Score=152.56 Aligned_cols=115 Identities=29% Similarity=0.551 Sum_probs=100.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCC-------
Q 003882 55 YLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIV------- 127 (789)
Q Consensus 55 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~------- 127 (789)
.|.|+|++|++|+..+..|.+||||+|+++++.++|+++.+|.||.|||+|.|.+... ...|.|+|||++..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~~~~ 80 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSRLKQ 80 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccccce
Confidence 5899999999999999889999999999998899999999999999999999998655 47899999999852
Q ss_pred ----CCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEE
Q 003882 128 ----GRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAV 177 (789)
Q Consensus 128 ----~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~ 177 (789)
+++++||++.+++.++... . +.||.|++..+.....|+|.+++
T Consensus 81 ~~~~~~~~~iG~~~i~l~~~~~~--~-----~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 81 KFTRESDDFLGQTIIEVRTLSGE--M-----DVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred eccccCCCcceEEEEEhHHccCC--C-----CeEEECccCCCCCcEeEEEEEEC
Confidence 4799999999999987533 2 29999998776667899998864
No 78
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.75 E-value=5.6e-18 Score=149.07 Aligned_cols=102 Identities=17% Similarity=0.211 Sum_probs=87.1
Q ss_pred CCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC----EEEeeccccCCCCCccccEEEEEEeC---CCceEEEE
Q 003882 377 KQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL----KWVRTRTLVDNFNPKWNEQYTWEVYD---PCTVITLG 449 (789)
Q Consensus 377 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~----~~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v~ 449 (789)
.+..|.|+|+|++|+||+ . .|.+||||++++.. .+.+|+++++|+||+|||.|.|.|.. +...|.|+
T Consensus 10 ~~~~~~L~V~vikA~~L~-~-----~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~ 83 (118)
T cd08677 10 DKQKAELHVNILEAENIS-V-----DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLT 83 (118)
T ss_pred cCcCCEEEEEEEEecCCC-C-----CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEE
Confidence 445589999999999998 2 24599999999943 57899999999999999999999874 36789999
Q ss_pred EEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEee
Q 003882 450 VFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPL 489 (789)
Q Consensus 450 v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 489 (789)
|||+|+++ ++++||++.+++.++..+.+.++|..|
T Consensus 84 V~d~Drfs-----~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 84 LRCCDRFS-----RHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred EEeCCCCC-----CCceEEEEEEccccccCCccccchhcC
Confidence 99999997 899999999999998666666777654
No 79
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.75 E-value=8.7e-18 Score=153.33 Aligned_cols=102 Identities=25% Similarity=0.370 Sum_probs=89.0
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEEC-----CEEEeeccccCCCCCccccEEEEEEeC---CCceEEEEEEe
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG-----LKWVRTRTLVDNFNPKWNEQYTWEVYD---PCTVITLGVFD 452 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v~v~d 452 (789)
+.|.|+|++|+||++++. ..|.+||||+|.+. ..+.||+++++++||.|||.|.|++.. ....|.|+|||
T Consensus 15 ~~L~V~vi~a~~L~~~d~--~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d 92 (125)
T cd08393 15 RELHVHVIQCQDLAAADP--KKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWH 92 (125)
T ss_pred CEEEEEEEEeCCCCCcCC--CCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEe
Confidence 699999999999998742 13789999999983 235899999999999999999999874 25689999999
Q ss_pred CCCCCCCCCCCCCccEEEEEECcccccCceEeeeEee
Q 003882 453 NCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPL 489 (789)
Q Consensus 453 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 489 (789)
++.++ ++++||.+.|+|.++..++....||+|
T Consensus 93 ~~~~~-----~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 93 RDSLG-----RNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred CCCCC-----CCcEeEEEEEecCccccCCCCcceEEC
Confidence 99875 889999999999999887777899987
No 80
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.75 E-value=1.3e-17 Score=152.23 Aligned_cols=118 Identities=24% Similarity=0.387 Sum_probs=100.8
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCCCCCC
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDP-CTVITLGVFDNCHLGGSG 460 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~~~~~~ 460 (789)
+|+|+|++|++|+.++ ..+.+||||+|+++++.++|++++++.||.|||.|.|.+.+. ...|.|+|||++..+
T Consensus 1 ~L~v~vi~a~~L~~~d---~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~--- 74 (123)
T cd04025 1 RLRCHVLEARDLAPKD---RNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVS--- 74 (123)
T ss_pred CEEEEEEEeeCCCCCC---CCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCC---
Confidence 4899999999999874 346899999999999999999999999999999999999875 578999999999875
Q ss_pred CCCCCccEEEEEECcccccCceEeeeEeeeecCCC---CCccceEEEEEE
Q 003882 461 TKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPS---GVKKMGELQLAV 507 (789)
Q Consensus 461 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~---g~~~~G~i~l~~ 507 (789)
.+++||.+.++|+++..+.....||.|...... ..+..|.|++.|
T Consensus 75 --~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 75 --KNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred --CCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 789999999999999877667899999754322 223479998876
No 81
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.74 E-value=1.4e-17 Score=152.45 Aligned_cols=121 Identities=32% Similarity=0.369 Sum_probs=101.4
Q ss_pred ccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC--EEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCC
Q 003882 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL--KWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLG 457 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~--~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~ 457 (789)
+|.|+|+|++|+||+..+. ..+.+||||++++++ +..+|+++.++.||.|||.|.|.+......|.|+|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~~--~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDI--IGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCcccc--cCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCC
Confidence 4899999999999986532 245789999999987 789999999999999999999999866889999999998865
Q ss_pred CCCCCCCCccEEEEEECcccccCceEe-eeEeeeecCCCCCccceEEEEEEEEee
Q 003882 458 GSGTKPDSRIGKVRIRLSTLEADRIYT-HSYPLLVLNPSGVKKMGELQLAVRFTC 511 (789)
Q Consensus 458 ~~~~~~d~~lG~~~i~l~~l~~~~~~~-~~~~L~~~~~~g~~~~G~i~l~~~f~~ 511 (789)
.|++||++.++|.++..+.... .++++. .+.+..|+|+++++|.|
T Consensus 79 -----~d~~iG~~~~~l~~l~~~~~~~~~~~~~~----~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 79 -----KDKLIGTAEFDLSSLLQNPEQENLTKNLL----RNGKPVGELNYDLRFFP 124 (124)
T ss_pred -----CCceeEEEEEEHHHhccCccccCcchhhh----cCCccceEEEEEEEeCC
Confidence 7899999999999999876654 344553 23345799999999864
No 82
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.74 E-value=3.8e-18 Score=157.00 Aligned_cols=117 Identities=24% Similarity=0.277 Sum_probs=98.4
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-----eeeeccccCCCCCeeccEEEEEccC--
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNY-----KGKTRHFEKKSNPEWKQVFAFSKEK-- 111 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-----~~~T~~~~~t~nP~wne~f~f~~~~-- 111 (789)
|.+++++.|+... ..|.|+|++|+||+..+..|.+||||+|++.+. ++||+++++|.||+|||+|.|.+..
T Consensus 2 G~i~~sL~Y~~~~--~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~ 79 (136)
T cd08406 2 GEILLSLSYLPTA--ERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIV 79 (136)
T ss_pred cEEEEEEEEcCCC--CEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHH
Confidence 5678999999887 899999999999999998899999999999642 5689999999999999999999853
Q ss_pred CCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCC
Q 003882 112 IQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRR 164 (789)
Q Consensus 112 ~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 164 (789)
+....|.|+|||++.++++++||++.|.... .+...+ +|..+....
T Consensus 80 l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~--~g~~~~-----hW~~ml~~~ 125 (136)
T cd08406 80 LQDLSLRVTVAESTEDGKTPNVGHVIIGPAA--SGMGLS-----HWNQMLASL 125 (136)
T ss_pred hCCcEEEEEEEeCCCCCCCCeeEEEEECCCC--CChhHH-----HHHHHHHCC
Confidence 4578999999999999999999999996653 222223 677666544
No 83
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.74 E-value=1.1e-17 Score=159.10 Aligned_cols=120 Identities=23% Similarity=0.370 Sum_probs=101.5
Q ss_pred ccccceeeecccC----------ceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeecc
Q 003882 39 SSERATSTYDLVE----------QMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQ 103 (789)
Q Consensus 39 ~~~~~~~~~~~~~----------~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne 103 (789)
|...+++.|.... ..+.|.|+|++|+||+..+..+.+||||+|++.+ +++||+++++|.||+|||
T Consensus 2 G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE 81 (162)
T cd04020 2 GELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNH 81 (162)
T ss_pred ceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCC
Confidence 4567888888833 4589999999999999999889999999999842 578999999999999999
Q ss_pred EEEEEcc---CCCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccC
Q 003882 104 VFAFSKE---KIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDR 163 (789)
Q Consensus 104 ~f~f~~~---~~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 163 (789)
+|.|.+. +.....|.|+|||++.++++++||++.+++.++......+ .|+.|...
T Consensus 82 ~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~-----~w~~~~~~ 139 (162)
T cd04020 82 TFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAV-----DWMDSTGE 139 (162)
T ss_pred EEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCcc-----ccccCChH
Confidence 9999852 3345689999999999989999999999999988765544 89888654
No 84
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.74 E-value=5.5e-17 Score=148.48 Aligned_cols=119 Identities=19% Similarity=0.307 Sum_probs=102.0
Q ss_pred eeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCce
Q 003882 53 MFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDY 132 (789)
Q Consensus 53 ~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~ 132 (789)
...|+|+|++|++|...+..|.+||||++.++++..+|+++++|.||+|||.|.|.+.+. ...|.|+|||++.+ +|++
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~-~d~~ 79 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLL-CDEF 79 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCC-CCCc
Confidence 368999999999999999889999999999999999999999999999999999988765 58999999999987 5899
Q ss_pred eEEEEEEccccCCCCCCCCCCCCeeEEcccCC--CCCccceEEEEEEEEe
Q 003882 133 IGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRR--DDRKVKGEVMLAVWIG 180 (789)
Q Consensus 133 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~--~~~~~~G~l~l~~~~~ 180 (789)
||++.+++..+... . ..|++|+... ..+...|+|.+++.+.
T Consensus 80 lG~~~~~l~~~~~~--~-----~~~~~l~~~~~~~~~~~~G~i~~~~~~~ 122 (126)
T cd04046 80 LGQATLSADPNDSQ--T-----LRTLPLRKRGRDAAGEVPGTISVKVTSS 122 (126)
T ss_pred eEEEEEecccCCCc--C-----ceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence 99999999875432 2 2789997433 2346789999998764
No 85
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.74 E-value=2.2e-17 Score=153.19 Aligned_cols=119 Identities=27% Similarity=0.407 Sum_probs=100.2
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCE-------EEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCC
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLK-------WVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNC 454 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-------~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~ 454 (789)
.|+|+|++|+||+.++ ..+.+||||+|.+++. ..+|+++++|.||.|||.|.|.+......|.|+|||++
T Consensus 1 ~L~v~Vi~a~~L~~~d---~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~ 77 (133)
T cd04033 1 ILRVKVLAGIDLAKKD---IFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDEN 77 (133)
T ss_pred CEEEEEEEeECCCccc---CCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECC
Confidence 3789999999999874 4578999999999654 57999999999999999999999776778999999999
Q ss_pred CCCCCCCCCCCccEEEEEECcccccCce------EeeeEeeeecCCCCCccceEEEEEEEE
Q 003882 455 HLGGSGTKPDSRIGKVRIRLSTLEADRI------YTHSYPLLVLNPSGVKKMGELQLAVRF 509 (789)
Q Consensus 455 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~------~~~~~~L~~~~~~g~~~~G~i~l~~~f 509 (789)
.++ .+++||++.++++++..+.. ...||+|......+ +..|+|++++.|
T Consensus 78 ~~~-----~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~~~G~l~~~~~~ 132 (133)
T cd04033 78 RLT-----RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKS-RVKGHLRLYMAY 132 (133)
T ss_pred CCC-----CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCC-cceeEEEEEEee
Confidence 875 78999999999999886542 46999998543333 346999999887
No 86
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.74 E-value=2.9e-17 Score=149.14 Aligned_cols=117 Identities=27% Similarity=0.451 Sum_probs=99.3
Q ss_pred EEEEEEEccCCCCCccCCCCCCcCcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCC
Q 003882 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLK-WVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGSGT 461 (789)
Q Consensus 383 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~~ 461 (789)
|.|+|++|+||+.++. .|.+||||++.++++ ..||++++++.||.|||.|.|.+.+....|.|+|||++.++
T Consensus 2 l~v~vi~a~~L~~~d~---~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~---- 74 (121)
T cd04054 2 LYIRIVEGKNLPAKDI---TGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLS---- 74 (121)
T ss_pred EEEEEEEeeCCcCCCC---CCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCC----
Confidence 7899999999998853 578999999999876 47999999999999999999999876789999999999876
Q ss_pred CCCCccEEEEEECcccccC-ceEeeeEeeeecCCCCCccceEEEEEEE
Q 003882 462 KPDSRIGKVRIRLSTLEAD-RIYTHSYPLLVLNPSGVKKMGELQLAVR 508 (789)
Q Consensus 462 ~~d~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 508 (789)
.|++||++.+++.++..+ ...+.|++|...+..+ ...|+|+++++
T Consensus 75 -~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~-~~~G~i~l~~~ 120 (121)
T cd04054 75 -RDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDE-EVQGEIHLELS 120 (121)
T ss_pred -CCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCC-ccccEEEEEEE
Confidence 899999999999988754 3468999997654332 24699998864
No 87
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.74 E-value=2.2e-17 Score=149.75 Aligned_cols=113 Identities=24% Similarity=0.328 Sum_probs=97.8
Q ss_pred EEEEEEEccCCCCCccCCCCCCcCcEEEEEEC---CEEEeeccccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCCCC
Q 003882 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG---LKWVRTRTLVDNFNPKWNEQYTWEVYDP-CTVITLGVFDNCHLGG 458 (789)
Q Consensus 383 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~---~~~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~~~~ 458 (789)
|+|+|++|+||+..+ ..+.+||||++.++ .+..||++++++.||+|||.|.|.+..+ ...|.|+|||++..
T Consensus 2 L~V~vi~a~~L~~~~---~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-- 76 (119)
T cd04036 2 LTVRVLRATNITKGD---LLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-- 76 (119)
T ss_pred eEEEEEEeeCCCccC---CCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC--
Confidence 789999999999874 35789999999985 3679999999999999999999998764 56799999999875
Q ss_pred CCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEEe
Q 003882 459 SGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRFT 510 (789)
Q Consensus 459 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 510 (789)
+|++||++.++++++..+.....|++|... ..|++++++.++
T Consensus 77 ----~~~~iG~~~~~l~~l~~g~~~~~~~~L~~~------~~g~l~~~~~~~ 118 (119)
T cd04036 77 ----MDDHLGTVLFDVSKLKLGEKVRVTFSLNPQ------GKEELEVEFLLE 118 (119)
T ss_pred ----CCcccEEEEEEHHHCCCCCcEEEEEECCCC------CCceEEEEEEee
Confidence 688999999999999999999999999632 359999988664
No 88
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.74 E-value=1.5e-17 Score=148.33 Aligned_cols=105 Identities=35% Similarity=0.520 Sum_probs=91.5
Q ss_pred EEEEEEEeeCCCCCCC-CCCCCcEEEEEECCeeeeeccccCCCCCee-ccEEEEEccCC--CCceEEEEEEeCCCCCCCc
Q 003882 56 LYVRVEKARDLPTNPV-SGSCDPYVEVKLGNYKGKTRHFEKKSNPEW-KQVFAFSKEKI--QSSVLEVFVRDREIVGRDD 131 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~-~g~~dpyv~v~~~~~~~~T~~~~~t~nP~w-ne~f~f~~~~~--~~~~l~v~V~d~~~~~~d~ 131 (789)
|.|+|++|+||+.++. .|.+||||+++++++++||++++++.||.| ||+|.|.+... ....|.|+|||++.+++++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 6799999999998874 688999999999999999999999999999 99999998653 3578999999999999999
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCeeEEccc
Q 003882 132 YIGKVVFDMNEVPTRVPPDSPLAPQWYRLED 162 (789)
Q Consensus 132 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 162 (789)
+||++.+++.++..... ......||+|.+
T Consensus 81 ~iG~~~~~l~~l~~~~~--~~~~~~w~~l~~ 109 (110)
T cd08688 81 AIGKVYIDLNPLLLKDS--VSQISGWFPIYD 109 (110)
T ss_pred ceEEEEEeHHHhcccCC--ccccCCeEEccc
Confidence 99999999999998421 122448999976
No 89
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.74 E-value=5.6e-17 Score=148.42 Aligned_cols=120 Identities=20% Similarity=0.288 Sum_probs=99.9
Q ss_pred ccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCC
Q 003882 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGS 459 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~ 459 (789)
.+.++|+|++|++|+..+ ..|.+||||++.++++.++|++++++.||+|||.|.|.+.++...|.|+|||++..
T Consensus 2 ~~~~~V~v~~A~~L~~~d---~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~--- 75 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQD---SGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL--- 75 (126)
T ss_pred cEEEEEEEEeCcCCCCCC---CCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC---
Confidence 468999999999999764 45789999999999999999999999999999999999988888999999999875
Q ss_pred CCCCCCccEEEEEECcccccCceEeeeEeeeecC-CCCCccceEEEEEEEEe
Q 003882 460 GTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLN-PSGVKKMGELQLAVRFT 510 (789)
Q Consensus 460 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~-~~g~~~~G~i~l~~~f~ 510 (789)
.|++||.+.+++.++..+ ...+++|.... ....+..|+|.+++.+.
T Consensus 76 ---~d~~lG~~~~~l~~~~~~--~~~~~~l~~~~~~~~~~~~G~i~~~~~~~ 122 (126)
T cd04046 76 ---CDEFLGQATLSADPNDSQ--TLRTLPLRKRGRDAAGEVPGTISVKVTSS 122 (126)
T ss_pred ---CCCceEEEEEecccCCCc--CceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence 589999999999986533 35788885221 12234579999988654
No 90
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.74 E-value=3e-17 Score=149.50 Aligned_cols=116 Identities=19% Similarity=0.317 Sum_probs=99.2
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEC-CeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCC--Cce
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLG-NYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGR--DDY 132 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~-~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~--d~~ 132 (789)
|+|+|++|++|+..+..+.+||||+++++ .+.++|+++++|.||.|||+|.|.+.. ...|.|+|||++.+++ +++
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d~~ 79 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQGF 79 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCCce
Confidence 78999999999999988999999999997 578899999999999999999999965 5899999999998875 579
Q ss_pred eEEEEEEccccCCCCCCCCCCCCeeEEcccCCC--CCccceEEEEEE
Q 003882 133 IGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRD--DRKVKGEVMLAV 177 (789)
Q Consensus 133 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~~G~l~l~~ 177 (789)
||++.+++.++...... ...||+|+.... .....|+|.+++
T Consensus 80 lG~~~i~l~~l~~~~~~----~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 80 LGCVRIRANAVLPLKDT----GYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred EeEEEEEHHHccccCCC----ccceeEeecCCCCCCceEeeEEEEEe
Confidence 99999999999865422 237999977654 335689998765
No 91
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.74 E-value=1.9e-17 Score=146.28 Aligned_cols=97 Identities=19% Similarity=0.290 Sum_probs=85.5
Q ss_pred eEEEEEEEEeeCCCCCCC----CCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCC-CCceEEEEEEeCCCCC
Q 003882 54 FYLYVRVEKARDLPTNPV----SGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKI-QSSVLEVFVRDREIVG 128 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~----~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~-~~~~l~v~V~d~~~~~ 128 (789)
|.|.|+|++|++|+..+. ++.+||||+|+++++.+||+++++|.||+|||+|.|.+... ....|.|+|||++.++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 579999999999998763 23589999999999999999999999999999999998543 3458999999999999
Q ss_pred CCceeEEEEEEccccCCCCCCC
Q 003882 129 RDDYIGKVVFDMNEVPTRVPPD 150 (789)
Q Consensus 129 ~d~~lG~~~i~l~~l~~~~~~~ 150 (789)
+|++||++.++|++|..+....
T Consensus 81 ~dd~IG~~~l~L~~l~~~~~~~ 102 (108)
T cd04039 81 FNDYVATGSLSVQELLNAAPQP 102 (108)
T ss_pred CCcceEEEEEEHHHHHhhCCCC
Confidence 9999999999999999876543
No 92
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.74 E-value=4.7e-17 Score=149.46 Aligned_cols=116 Identities=25% Similarity=0.375 Sum_probs=101.8
Q ss_pred EEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCC--CCceEEEEEEeCCCCCCCceeEEEE
Q 003882 60 VEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKI--QSSVLEVFVRDREIVGRDDYIGKVV 137 (789)
Q Consensus 60 v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~--~~~~l~v~V~d~~~~~~d~~lG~~~ 137 (789)
|++|+||+. ..|.+||||+|++++.+++|++++++.||+|||+|.|.+... ....|.|+|||++..+++++||++.
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 689999998 578999999999999999999999999999999999998653 4689999999999998999999999
Q ss_pred EEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEeecC
Q 003882 138 FDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGTQA 183 (789)
Q Consensus 138 i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~ 183 (789)
+++.++..+.... .|++|.+..+. ...|+|+++++|.+..
T Consensus 80 ~~l~~l~~~~~~~-----~~~~L~~~~~~-~~~~~l~l~~~~~~~~ 119 (127)
T cd08373 80 VSLQDLVSEGLLE-----VTEPLLDSNGR-PTGATISLEVSYQPPD 119 (127)
T ss_pred EEhhHcccCCceE-----EEEeCcCCCCC-cccEEEEEEEEEeCCC
Confidence 9999999765544 89999877654 4579999999997543
No 93
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.73 E-value=1.5e-17 Score=148.62 Aligned_cols=101 Identities=27% Similarity=0.420 Sum_probs=88.6
Q ss_pred eEEEEEEEEeeCCCCCCCC-CCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEEccCC---CCceEEEEEEeCCC
Q 003882 54 FYLYVRVEKARDLPTNPVS-GSCDPYVEVKLGN---YKGKTRHFEKKSNPEWKQVFAFSKEKI---QSSVLEVFVRDREI 126 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~-g~~dpyv~v~~~~---~~~~T~~~~~t~nP~wne~f~f~~~~~---~~~~l~v~V~d~~~ 126 (789)
|.|.|+|++|++|+..+.. +.+||||+|++.+ ..++|+++++|.||+|||+|.|.+... ....|.|+|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 5799999999999999887 8999999999964 357999999999999999999987543 35789999999999
Q ss_pred CCCCceeEEEEEEccccCCCCCCCCCCCCeeEEccc
Q 003882 127 VGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLED 162 (789)
Q Consensus 127 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 162 (789)
+++|++||++.+++.++.... .|+++..
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~~--------~~~~~~~ 108 (111)
T cd04041 81 FTADDRLGRVEIDLKELIEDR--------NWMGRRE 108 (111)
T ss_pred CCCCCcceEEEEEHHHHhcCC--------CCCcccc
Confidence 999999999999999998432 7888754
No 94
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.73 E-value=2.8e-17 Score=147.05 Aligned_cols=100 Identities=19% Similarity=0.291 Sum_probs=86.9
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEE-C----C--EEEeeccccCCCCCccccEEEEEEeCC----CceEEEEE
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY-G----L--KWVRTRTLVDNFNPKWNEQYTWEVYDP----CTVITLGV 450 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~-~----~--~~~~T~~~~~t~~P~wne~~~f~v~~~----~~~l~v~v 450 (789)
.|+|+|++|+||+..+ .|.+||||+|++ | . ++++|+++.+|+||+|||.|.|.+... ...|.|.|
T Consensus 1 kL~V~Vi~A~~L~~~d----~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V 76 (120)
T cd08395 1 KVTVKVVAANDLKWQT----TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICV 76 (120)
T ss_pred CEEEEEEECcCCCccc----CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEE
Confidence 3899999999998763 378999999997 3 2 357899999999999999999999742 35799999
Q ss_pred EeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeee
Q 003882 451 FDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490 (789)
Q Consensus 451 ~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 490 (789)
||+|..+ ++++||++.++++++..++....|++|.
T Consensus 77 ~D~d~~~-----~dd~IG~~~l~l~~~~~~~~~~~w~~L~ 111 (120)
T cd08395 77 KDYCFAR-----DDRLVGVTVLQLRDIAQAGSCACWLPLG 111 (120)
T ss_pred EEecccC-----CCCEEEEEEEEHHHCcCCCcEEEEEECc
Confidence 9998764 7899999999999999999889999995
No 95
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.73 E-value=8.9e-18 Score=154.25 Aligned_cols=102 Identities=23% Similarity=0.316 Sum_probs=90.2
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCC--CCCCCcEEEEEECCe-----eeeeccccCCCCCeeccEEEEEccC
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPV--SGSCDPYVEVKLGNY-----KGKTRHFEKKSNPEWKQVFAFSKEK 111 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~--~g~~dpyv~v~~~~~-----~~~T~~~~~t~nP~wne~f~f~~~~ 111 (789)
|...+++.|.... +.|.|+|++|+||...+. .+.+||||+|++.++ ++||+++++|.||+|||+|.|.+..
T Consensus 2 Gel~~sL~Y~~~~--~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~ 79 (138)
T cd08407 2 GEVLLSISYLPAA--NRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPS 79 (138)
T ss_pred CEEEEEEEEeCCC--CeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCH
Confidence 4678999999877 899999999999999873 355999999999763 5699999999999999999999853
Q ss_pred --CCCceEEEEEEeCCCCCCCceeEEEEEEccc
Q 003882 112 --IQSSVLEVFVRDREIVGRDDYIGKVVFDMNE 142 (789)
Q Consensus 112 --~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~ 142 (789)
+....|.|+|||++.++++++||++.+.+..
T Consensus 80 ~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 80 ELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred HHhCccEEEEEEEeCCCCcCcceeceEEecCcC
Confidence 4568899999999999999999999999864
No 96
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.72 E-value=4e-17 Score=145.00 Aligned_cols=98 Identities=17% Similarity=0.166 Sum_probs=87.1
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCC
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGSG 460 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~ 460 (789)
|.|.|.|++|++|+.+ +..||||+|++|+++.+|++++++ ||.|||.|.|.+.++...|.|+|||++.+
T Consensus 2 ~~L~V~Vv~Ar~L~~~------~~~dPYV~Ik~g~~k~kT~v~~~~-nP~WnE~F~F~~~~~~~~L~v~V~dkd~~---- 70 (127)
T cd08394 2 SLLCVLVKKAKLDGAP------DKFNTYVTLKVQNVKSTTIAVRGS-QPCWEQDFMFEINRLDLGLVIELWNKGLI---- 70 (127)
T ss_pred ceEEEEEEEeeCCCCC------CCCCCeEEEEECCEEeEeeECCCC-CCceeeEEEEEEcCCCCEEEEEEEeCCCc----
Confidence 6899999999999743 356999999999999999999884 99999999999988777899999999865
Q ss_pred CCCCCccEEEEEECcccccCceE--eeeEeeee
Q 003882 461 TKPDSRIGKVRIRLSTLEADRIY--THSYPLLV 491 (789)
Q Consensus 461 ~~~d~~lG~~~i~l~~l~~~~~~--~~~~~L~~ 491 (789)
.|++||++.|+|+++..+... ..||+|..
T Consensus 71 --~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 71 --WDTLVGTVWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred --CCCceEEEEEEhHHcccCCCCCCCccEecCh
Confidence 799999999999999876554 89999963
No 97
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.72 E-value=1.3e-16 Score=147.50 Aligned_cols=114 Identities=24% Similarity=0.406 Sum_probs=99.1
Q ss_pred eEEEEEEEEeeCCCCCCCC----------CCCCcEEEEEECCee-eeeccccCCCCCeeccEEEEEccCCCCceEEEEEE
Q 003882 54 FYLYVRVEKARDLPTNPVS----------GSCDPYVEVKLGNYK-GKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVR 122 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~----------g~~dpyv~v~~~~~~-~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~ 122 (789)
|.|+|+|++|++|...+.. +.+||||++.++++. .+|+++.+|.||.|||+|.|.+.+ ...|.|.||
T Consensus 4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~--~~~l~~~v~ 81 (132)
T cd04014 4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN--GRNLELTVF 81 (132)
T ss_pred eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC--CCEEEEEEE
Confidence 7899999999999988752 679999999999865 699999999999999999999973 578999999
Q ss_pred eCCCCCCCceeEEEEEEccccCCC--CCCCCCCCCeeEEcccCCCCCccceEEEEEEEEee
Q 003882 123 DREIVGRDDYIGKVVFDMNEVPTR--VPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGT 181 (789)
Q Consensus 123 d~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 181 (789)
|++.++++++||++.++|.++..+ ... ..|++|+. .|.|++.+.+..
T Consensus 82 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~-----~~w~~L~~-------~G~l~l~~~~~~ 130 (132)
T cd04014 82 HDAAIGPDDFVANCTISFEDLIQRGSGSF-----DLWVDLEP-------QGKLHVKIELKG 130 (132)
T ss_pred eCCCCCCCceEEEEEEEhHHhcccCCCcc-----cEEEEccC-------CcEEEEEEEEec
Confidence 999988999999999999999973 333 39999972 589999988764
No 98
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.72 E-value=6.4e-17 Score=147.94 Aligned_cols=104 Identities=22% Similarity=0.382 Sum_probs=91.3
Q ss_pred CccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEEC---CEEEeeccccCCCCCccccEEEEEEeCC---CceEEEEEEe
Q 003882 379 PIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG---LKWVRTRTLVDNFNPKWNEQYTWEVYDP---CTVITLGVFD 452 (789)
Q Consensus 379 ~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~---~~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~d 452 (789)
..|.|.|+|++|+||+.++ ..|.+||||++.+. .+..||++++++.||.|||.|.|.+... ...|.|+|||
T Consensus 14 ~~~~L~V~v~~a~~L~~~d---~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d 90 (124)
T cd08387 14 DMGILNVKLIQARNLQPRD---FSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYD 90 (124)
T ss_pred CCCEEEEEEEEeeCCCCCC---CCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEE
Confidence 3479999999999999874 45789999999983 4569999999999999999999998753 5689999999
Q ss_pred CCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeee
Q 003882 453 NCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490 (789)
Q Consensus 453 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 490 (789)
++.++ ++++||++.|+|+++..++..+.||+|.
T Consensus 91 ~~~~~-----~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 91 FDQFS-----RDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCCCC-----CCceeEEEEEecccccCCCCcceEEECc
Confidence 99875 7899999999999999888889999984
No 99
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.72 E-value=7.5e-18 Score=157.09 Aligned_cols=95 Identities=26% Similarity=0.394 Sum_probs=83.1
Q ss_pred EEEEEEEEccCCCCCccCC-----------CCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCC--CceEEE
Q 003882 382 ILEVGILSAQGLLPMKTRD-----------GRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDP--CTVITL 448 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~-----------~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~--~~~l~v 448 (789)
.|.|+|++|++|+.+|... ..+.+||||+|.++++..||++++++.||+|||.|.|++..+ ...|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 3789999999999987431 235789999999999999999999999999999999998654 569999
Q ss_pred EEEeCCCCCCCCCCCCCccEEEEEECcccccCc
Q 003882 449 GVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADR 481 (789)
Q Consensus 449 ~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 481 (789)
+|||+|..+ +|++||++.|+++++...+
T Consensus 81 ~v~D~d~~~-----~dd~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 81 QIRDWDRVG-----NDDVIGTHFIDLSKISNSG 108 (151)
T ss_pred EEEECCCCC-----CCCEEEEEEEeHHHhccCC
Confidence 999999876 8999999999999987643
No 100
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.72 E-value=4.2e-17 Score=149.42 Aligned_cols=119 Identities=21% Similarity=0.253 Sum_probs=102.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eeeeecccc-CCCCCeeccEEEEEccCCC----CceEEEEEEeCCCCC
Q 003882 55 YLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-YKGKTRHFE-KKSNPEWKQVFAFSKEKIQ----SSVLEVFVRDREIVG 128 (789)
Q Consensus 55 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~T~~~~-~t~nP~wne~f~f~~~~~~----~~~l~v~V~d~~~~~ 128 (789)
.|.|+|++|++|+..+..+.+||||+|++++ ++++|+++. ++.||.|||+|.|.+.... ...|.|+|||++.++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 3889999999999998889999999999998 788999975 5899999999999987653 689999999999988
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEE
Q 003882 129 RDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVML 175 (789)
Q Consensus 129 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l 175 (789)
++++||++.+++.++......+......||+|..+.| +..|.|++
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g--~~~G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG--KPQGVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCC--CcCeEEeC
Confidence 9999999999999999876543234458999998764 57888864
No 101
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.72 E-value=5.2e-17 Score=143.56 Aligned_cols=96 Identities=22% Similarity=0.322 Sum_probs=84.1
Q ss_pred cEEEEEEEEccCCCCCccCC-CCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCC--CceEEEEEEeCCCCC
Q 003882 381 GILEVGILSAQGLLPMKTRD-GRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDP--CTVITLGVFDNCHLG 457 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~-~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~--~~~l~v~v~d~~~~~ 457 (789)
|.|.|+|++|+||++.+... .++.+||||+|+++++.+||+++++++||+|||.|.|.+.+. ...|.|+|||++..+
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 78999999999999876421 224689999999999999999999999999999999998753 458999999999876
Q ss_pred CCCCCCCCccEEEEEECcccccCc
Q 003882 458 GSGTKPDSRIGKVRIRLSTLEADR 481 (789)
Q Consensus 458 ~~~~~~d~~lG~~~i~l~~l~~~~ 481 (789)
.|++||++.++|++|..+.
T Consensus 81 -----~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 81 -----FNDYVATGSLSVQELLNAA 99 (108)
T ss_pred -----CCcceEEEEEEHHHHHhhC
Confidence 8999999999999998654
No 102
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.72 E-value=1.2e-16 Score=147.86 Aligned_cols=118 Identities=25% Similarity=0.353 Sum_probs=101.0
Q ss_pred ccEEEEEEEEccCCCCCccCC-------CCCCcCcEEEEEECCEE-EeeccccCCCCCccccEEEEEEeCCCceEEEEEE
Q 003882 380 IGILEVGILSAQGLLPMKTRD-------GRGTTDAYCVAKYGLKW-VRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVF 451 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~-------~~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~ 451 (789)
.|.|+|+|++|+||...+... +.+.+||||++.++++. .+|++++++.||.|||.|.|.+. ....|.|.||
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~ 81 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVF 81 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEE
Confidence 389999999999999875410 13689999999998865 79999999999999999999997 4678999999
Q ss_pred eCCCCCCCCCCCCCccEEEEEECccccc--CceEeeeEeeeecCCCCCccceEEEEEEEEee
Q 003882 452 DNCHLGGSGTKPDSRIGKVRIRLSTLEA--DRIYTHSYPLLVLNPSGVKKMGELQLAVRFTC 511 (789)
Q Consensus 452 d~~~~~~~~~~~d~~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 511 (789)
|++..+ .+++||++.++|+++.. +...+.|++|. +.|+|+|++.|..
T Consensus 82 d~~~~~-----~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~l~l~~~~~~ 130 (132)
T cd04014 82 HDAAIG-----PDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQGKLHVKIELKG 130 (132)
T ss_pred eCCCCC-----CCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCcEEEEEEEEec
Confidence 998765 78999999999999987 56679999995 3599999998764
No 103
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.71 E-value=1e-16 Score=146.78 Aligned_cols=120 Identities=23% Similarity=0.304 Sum_probs=100.3
Q ss_pred eeEEEEEEEEeeCCCCCC-CCCCCCcEEEEEECC--eeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCC
Q 003882 53 MFYLYVRVEKARDLPTNP-VSGSCDPYVEVKLGN--YKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGR 129 (789)
Q Consensus 53 ~~~L~V~v~~a~~L~~~~-~~g~~dpyv~v~~~~--~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~ 129 (789)
+|.|.|+|++|+||+..+ ..+.+||||++++++ ..++|+++.++.||.|||.|.|.+.. ..+.|.|+|||++..++
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~-~~~~l~~~v~d~~~~~~ 79 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNS-LTEPLNLTVYDFNDKRK 79 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCC-CCCEEEEEEEecCCCCC
Confidence 478999999999999655 356799999999998 68899999999999999999999874 36899999999999889
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEe
Q 003882 130 DDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIG 180 (789)
Q Consensus 130 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 180 (789)
+++||++.+++.++......+ ..|+.+.. . ++..|+|.+++.|.
T Consensus 80 d~~iG~~~~~l~~l~~~~~~~----~~~~~~~~-~--~k~~G~i~~~l~~~ 123 (124)
T cd04044 80 DKLIGTAEFDLSSLLQNPEQE----NLTKNLLR-N--GKPVGELNYDLRFF 123 (124)
T ss_pred CceeEEEEEEHHHhccCcccc----Ccchhhhc-C--CccceEEEEEEEeC
Confidence 999999999999999765432 13444542 2 24689999999875
No 104
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.71 E-value=2e-17 Score=153.72 Aligned_cols=118 Identities=28% Similarity=0.375 Sum_probs=100.0
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccC--
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEK-- 111 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~-- 111 (789)
|.+.++++|+... ..|.|+|++|+||+..+..|.+||||++++.+ .+++|+++++|.||+|||+|.|.+..
T Consensus 2 G~l~~~l~y~~~~--~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~ 79 (136)
T cd08404 2 GELLLSLCYQPTT--NRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEE 79 (136)
T ss_pred CeEEEEEEEeCCC--CeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHH
Confidence 4678999998876 89999999999999999899999999999854 25689999999999999999999853
Q ss_pred CCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCC
Q 003882 112 IQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRD 165 (789)
Q Consensus 112 ~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 165 (789)
.....|.|+|||++.++++++||++.+++.. . ..... .|+.|....+
T Consensus 80 ~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~-~-~~~~~-----~w~~l~~~~~ 126 (136)
T cd08404 80 LEDISVEFLVLDSDRVTKNEVIGRLVLGPKA-S-GSGGH-----HWKEVCNPPR 126 (136)
T ss_pred hCCCEEEEEEEECCCCCCCccEEEEEECCcC-C-CchHH-----HHHHHHhCCC
Confidence 3456899999999999999999999999988 2 22222 8998876544
No 105
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.71 E-value=1.8e-16 Score=145.56 Aligned_cols=120 Identities=23% Similarity=0.411 Sum_probs=100.2
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCC
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN---YKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRD 130 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d 130 (789)
+.|+|+|++|++|+..+..+.+||||++.+.+ ..++|++++++.||.|||+|.|.+.......|.|+|||++..+++
T Consensus 1 ~~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~ 80 (126)
T cd04043 1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKH 80 (126)
T ss_pred CEEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCC
Confidence 36899999999999999889999999999875 357999999999999999999999775568999999999998899
Q ss_pred ceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEeec
Q 003882 131 DYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGTQ 182 (789)
Q Consensus 131 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~ 182 (789)
++||++.++|..+..... ......|++|.. .|.|.+.+.+...
T Consensus 81 ~~iG~~~i~l~~~~~~~~--~~~~~~w~~l~~-------~g~i~l~~~~~~~ 123 (126)
T cd04043 81 DLCGRASLKLDPKRFGDD--GLPREIWLDLDT-------QGRLLLRVSMEGE 123 (126)
T ss_pred ceEEEEEEecCHHHcCCC--CCCceEEEEcCC-------CCeEEEEEEEeee
Confidence 999999999998754320 112238999964 4788888877643
No 106
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.71 E-value=6.6e-17 Score=145.72 Aligned_cols=101 Identities=19% Similarity=0.326 Sum_probs=86.9
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeCC--CceEEEEEEeC
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL-----KWVRTRTLVDNFNPKWNEQYTWEVYDP--CTVITLGVFDN 453 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~--~~~l~v~v~d~ 453 (789)
+.|.|+|++|+||++++ .|.+||||++.+.. .+.||++++++.||.|||.|.|.+... ...|.|+|||.
T Consensus 12 ~~L~V~Vi~ar~L~~~~----~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~ 87 (119)
T cd08685 12 RKLTLHVLEAKGLRSTN----SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNK 87 (119)
T ss_pred CEEEEEEEEEECCCCCC----CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECC
Confidence 59999999999999874 46899999999943 367999999999999999999998752 45789999998
Q ss_pred CCCCCCCCCCCCccEEEEEECcccccCceEeeeEee
Q 003882 454 CHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPL 489 (789)
Q Consensus 454 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 489 (789)
+..+ ..+++||.+.|+|.++..+.....||.|
T Consensus 88 ~~~~----~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 88 LSKS----RDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCCc----CCCEEEEEEEecHHHhccCccccceEeC
Confidence 8753 2468999999999999888878999986
No 107
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.71 E-value=1.3e-16 Score=146.04 Aligned_cols=103 Identities=27% Similarity=0.357 Sum_probs=90.4
Q ss_pred ccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEEC---CEEEeeccccCCCCCccccEEEEEEeCC---CceEEEEEEeC
Q 003882 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG---LKWVRTRTLVDNFNPKWNEQYTWEVYDP---CTVITLGVFDN 453 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~---~~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~d~ 453 (789)
.|.|.|+|++|+||+.++ ..+.+||||++.+. .+.+||++++++.||.|||.|.|.+... ...|.|+|||+
T Consensus 15 ~~~L~V~v~~a~~L~~~d---~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~ 91 (124)
T cd08385 15 SNQLTVGIIQAADLPAMD---MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDF 91 (124)
T ss_pred CCEEEEEEEEeeCCCCcc---CCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeC
Confidence 369999999999999874 35789999999984 3568999999999999999999998752 46899999999
Q ss_pred CCCCCCCCCCCCccEEEEEECcccccCceEeeeEeee
Q 003882 454 CHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490 (789)
Q Consensus 454 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 490 (789)
+.++ ++++||++.++|+++..+...+.|++|.
T Consensus 92 d~~~-----~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 92 DRFS-----KHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCCC-----CCceeEEEEEecCcccCCCCcceEEEcc
Confidence 9875 7899999999999998888889999985
No 108
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.71 E-value=2.9e-17 Score=152.25 Aligned_cols=116 Identities=25% Similarity=0.366 Sum_probs=98.3
Q ss_pred ccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccCC--C
Q 003882 41 ERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEKI--Q 113 (789)
Q Consensus 41 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~~--~ 113 (789)
+++++.|+... +.|.|+|++|+||+..+..|.+||||+|++.+ .+++|+++++|.||+|||+|.|.+... .
T Consensus 2 i~~~l~y~~~~--~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~ 79 (133)
T cd08384 2 ILVSLMYNTQR--RGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLA 79 (133)
T ss_pred EEEEEEEcCCC--CEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhC
Confidence 46889999977 99999999999999999889999999999964 357999999999999999999998543 4
Q ss_pred CceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCC
Q 003882 114 SSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRD 165 (789)
Q Consensus 114 ~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 165 (789)
...|.|+|||++..+++++||++.+++... +...+ +|+++....+
T Consensus 80 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~--~~~~~-----~W~~~l~~~~ 124 (133)
T cd08384 80 KKTLEITVWDKDIGKSNDYIGGLQLGINAK--GERLR-----HWLDCLKNPD 124 (133)
T ss_pred CCEEEEEEEeCCCCCCccEEEEEEEecCCC--CchHH-----HHHHHHhCCC
Confidence 578999999999988999999999999752 22222 8988866543
No 109
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.71 E-value=1.8e-16 Score=145.94 Aligned_cols=123 Identities=20% Similarity=0.371 Sum_probs=102.6
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEE-EeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCC
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKW-VRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGS 459 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~ 459 (789)
-.|.|.|++|+||+++ .||||.|.++++. .||+++.++.||.|||.|.|....+...|+|.||+.+... +
T Consensus 11 ~sL~v~V~EAk~Lp~~--------~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~-~ 81 (146)
T cd04013 11 NSLKLWIIEAKGLPPK--------KRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKK-K 81 (146)
T ss_pred EEEEEEEEEccCCCCc--------CCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcc-c
Confidence 4899999999999874 2799999999987 6999999999999999999988777789999998655321 1
Q ss_pred CCCCCCccEEEEEECcccccCceEeeeEeeeecCCCC-------CccceEEEEEEEEeec
Q 003882 460 GTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSG-------VKKMGELQLAVRFTCL 512 (789)
Q Consensus 460 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g-------~~~~G~i~l~~~f~~~ 512 (789)
...++.+||++.||+.++..+...+.||||...+... ....++|+++++|.+.
T Consensus 82 ~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 82 KKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred cccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 1126789999999999999999999999998765443 2345899999999875
No 110
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.71 E-value=1.1e-16 Score=149.24 Aligned_cols=110 Identities=26% Similarity=0.437 Sum_probs=93.4
Q ss_pred EEEEEEEeeCCCCCCCCC--------------CCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCC-CCceEEEE
Q 003882 56 LYVRVEKARDLPTNPVSG--------------SCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKI-QSSVLEVF 120 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g--------------~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~-~~~~l~v~ 120 (789)
|.|+|++|++|+.+|.++ .+||||+|.+++++.+|++++++.||+|||+|.|.+..+ ..+.|.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 789999999999988543 689999999999999999999999999999999997432 35799999
Q ss_pred EEeCCCCCCCceeEEEEEEccccCCCCCCC--CCCCCeeEEcccCCC
Q 003882 121 VRDREIVGRDDYIGKVVFDMNEVPTRVPPD--SPLAPQWYRLEDRRD 165 (789)
Q Consensus 121 V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~--~~~~~~w~~L~~~~~ 165 (789)
|||++..++|++||.+.+++.++....... -...+.|+.|.....
T Consensus 82 v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~ 128 (151)
T cd04018 82 IRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPR 128 (151)
T ss_pred EEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCcc
Confidence 999999999999999999999988754211 124569999987753
No 111
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.71 E-value=1.9e-16 Score=145.09 Aligned_cols=120 Identities=27% Similarity=0.440 Sum_probs=97.6
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCC--
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGS-- 459 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~-- 459 (789)
.|+|+|++|++|+..+ ..|.+||||+|.++++..+|++++++.||.|||.|.|.+..+...|.|+|||+|.....
T Consensus 2 ~L~V~vi~a~~L~~~d---~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~ 78 (127)
T cd04027 2 KISITVVCAQGLIAKD---KTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRL 78 (127)
T ss_pred eEEEEEEECcCCcCCC---CCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccc
Confidence 6899999999999874 45789999999999999999999999999999999999977777999999999852100
Q ss_pred ----CCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEE
Q 003882 460 ----GTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAV 507 (789)
Q Consensus 460 ----~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~ 507 (789)
....+++||.+.+++.++... ...||+|......+ +.+|+|.|++
T Consensus 79 ~~~~~~~~~~~iG~~~i~l~~~~~~--~~~w~~L~~~~~~~-~~~G~i~~~~ 127 (127)
T cd04027 79 KQKFTRESDDFLGQTIIEVRTLSGE--MDVWYNLEKRTDKS-AVSGAIRLHI 127 (127)
T ss_pred ceeccccCCCcceEEEEEhHHccCC--CCeEEECccCCCCC-cEeEEEEEEC
Confidence 013689999999999998643 47899998554322 3479998863
No 112
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.70 E-value=7.1e-17 Score=150.36 Aligned_cols=102 Identities=24% Similarity=0.306 Sum_probs=87.3
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEe---------------C
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL-----KWVRTRTLVDNFNPKWNEQYTWEVY---------------D 441 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~---------------~ 441 (789)
.|.|+|++|+||+. ..|.+||||+|.+.+ +..+|+++++|+||+|||.|.|.+. +
T Consensus 1 kL~V~Vi~ArnL~~-----~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~ 75 (148)
T cd04010 1 KLSVRVIECSDLAL-----KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEED 75 (148)
T ss_pred CEEEEEEeCcCCCC-----CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCccc
Confidence 37899999999986 247899999999965 6789999999999999999999995 1
Q ss_pred -CCceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccC-ceEeeeEeeeecC
Q 003882 442 -PCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEAD-RIYTHSYPLLVLN 493 (789)
Q Consensus 442 -~~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~ 493 (789)
....|.|.|||++..+ .|++||++.|++.++..+ .....||+|....
T Consensus 76 ~~~~~L~i~V~d~~~~~-----~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~ 124 (148)
T cd04010 76 AEKLELRVDLWHASMGG-----GDVFLGEVRIPLRGLDLQAGSHQAWYFLQPRE 124 (148)
T ss_pred ccEEEEEEEEEcCCCCC-----CCceeEEEEEecccccccCCcCcceeecCCcc
Confidence 1357999999998865 889999999999999987 5679999996443
No 113
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.70 E-value=5.6e-17 Score=144.67 Aligned_cols=102 Identities=27% Similarity=0.428 Sum_probs=90.0
Q ss_pred EEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCcc-ccEEEEEEeCC---CceEEEEEEeCCCCCC
Q 003882 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKW-NEQYTWEVYDP---CTVITLGVFDNCHLGG 458 (789)
Q Consensus 383 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w-ne~~~f~v~~~---~~~l~v~v~d~~~~~~ 458 (789)
|.|+|++|+||+.++. ..+.+||||++.++++.+||+++++++||.| ||.|.|.+... ...|.|+|||++.++
T Consensus 1 l~V~v~~a~~L~~~d~--~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~- 77 (110)
T cd08688 1 LKVRVVAARDLPVMDR--SSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS- 77 (110)
T ss_pred CEEEEEEEECCCcccc--CCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC-
Confidence 5799999999998753 2478999999999999999999999999999 99999999763 468999999999875
Q ss_pred CCCCCCCccEEEEEECccccc---CceEeeeEeeee
Q 003882 459 SGTKPDSRIGKVRIRLSTLEA---DRIYTHSYPLLV 491 (789)
Q Consensus 459 ~~~~~d~~lG~~~i~l~~l~~---~~~~~~~~~L~~ 491 (789)
++++||++.+++.++.. +.....||+|.+
T Consensus 78 ----~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 78 ----ANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred ----CCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 78999999999999987 456799999863
No 114
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.70 E-value=1.7e-16 Score=145.48 Aligned_cols=101 Identities=25% Similarity=0.351 Sum_probs=85.4
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeC----CCceEEEEEE
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL-----KWVRTRTLVDNFNPKWNEQYTWEVYD----PCTVITLGVF 451 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~----~~~~l~v~v~ 451 (789)
|.|.|+|++|+||+.++ ..+.+||||+|.+.+ ...||++++++.||+|||.|.|.+.. ....|.|+||
T Consensus 16 ~~L~V~vi~a~~L~~~~---~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~ 92 (125)
T cd04031 16 SQLIVTVLQARDLPPRD---DGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVW 92 (125)
T ss_pred CEEEEEEEEecCCCCcC---CCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEE
Confidence 69999999999999874 347899999999854 57899999999999999999998754 2568999999
Q ss_pred eCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeee
Q 003882 452 DNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490 (789)
Q Consensus 452 d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 490 (789)
|++..+ .+++||++.++|++... .....||+|.
T Consensus 93 d~~~~~-----~~~~iG~~~i~l~~~~~-~~~~~W~~L~ 125 (125)
T cd04031 93 DYDRDG-----ENDFLGEVVIDLADALL-DDEPHWYPLQ 125 (125)
T ss_pred eCCCCC-----CCcEeeEEEEecccccc-cCCcceEECc
Confidence 999875 78999999999999432 2336899983
No 115
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.70 E-value=2.9e-17 Score=152.00 Aligned_cols=119 Identities=21% Similarity=0.333 Sum_probs=99.4
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC------eeeeeccccCCCCCeeccEEEEEcc--
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN------YKGKTRHFEKKSNPEWKQVFAFSKE-- 110 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~------~~~~T~~~~~t~nP~wne~f~f~~~-- 110 (789)
+...+++.|+... +.|.|+|++|+||+..+..|.+||||++++.+ .++||++++++.||+|||+|.|.+.
T Consensus 2 ~ei~~sL~Y~~~~--~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~ 79 (138)
T cd08408 2 PELLLGLEYNALT--GRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALF 79 (138)
T ss_pred CeEEEEeEEcCCC--CeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHH
Confidence 3568899999987 99999999999999999889999999999964 2469999999999999999999985
Q ss_pred CCCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCC
Q 003882 111 KIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRD 165 (789)
Q Consensus 111 ~~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 165 (789)
++....|.|.|||++.++++++||++.+++...-.+. .+ +|+.+....+
T Consensus 80 ~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~~~-~~-----hW~~~l~~~~ 128 (138)
T cd08408 80 QLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEEE-EE-----HWNEMKESKG 128 (138)
T ss_pred HhCccEEEEEEEECCCCCCCcEEEEEEECCcCCCchH-HH-----HHHHHHhCCC
Confidence 3456899999999999999999999999887543221 12 6887765443
No 116
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.70 E-value=2.5e-16 Score=144.65 Aligned_cols=115 Identities=23% Similarity=0.373 Sum_probs=100.2
Q ss_pred EEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCC---CceEEEEEEeCCCCCCCCCCC
Q 003882 387 ILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDP---CTVITLGVFDNCHLGGSGTKP 463 (789)
Q Consensus 387 v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~d~~~~~~~~~~~ 463 (789)
|++|+||+. ..+.+||||+|.+++..++|++++++.||+|||.|.|.+..+ ...|.|+|||++..+ +
T Consensus 2 vi~a~~L~~-----~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~-----~ 71 (127)
T cd08373 2 VVSLKNLPG-----LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVG-----R 71 (127)
T ss_pred eEEeeCCcc-----cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCC-----C
Confidence 689999986 247899999999999999999999999999999999999753 679999999999875 7
Q ss_pred CCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEEeecC
Q 003882 464 DSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRFTCLS 513 (789)
Q Consensus 464 d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~~ 513 (789)
|++||++.++++++..+.....|++|...+ +....|+|++++.|.|..
T Consensus 72 d~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~~~l~l~~~~~~~~ 119 (127)
T cd08373 72 NRLIGSATVSLQDLVSEGLLEVTEPLLDSN--GRPTGATISLEVSYQPPD 119 (127)
T ss_pred CceEEEEEEEhhHcccCCceEEEEeCcCCC--CCcccEEEEEEEEEeCCC
Confidence 899999999999999888889999997543 333359999999998763
No 117
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.70 E-value=1.2e-16 Score=147.66 Aligned_cols=106 Identities=26% Similarity=0.400 Sum_probs=94.4
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-------eeeeeccccCCCCCeeccEEEEEccC
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-------YKGKTRHFEKKSNPEWKQVFAFSKEK 111 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-------~~~~T~~~~~t~nP~wne~f~f~~~~ 111 (789)
|...++++|+... ..|.|+|++|++|+..+..+.+||||+|++.+ ..++|+++++|.||+|||+|.|.+..
T Consensus 3 G~l~~~l~y~~~~--~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~ 80 (133)
T cd04009 3 GVLTVKAYYRASE--QSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPP 80 (133)
T ss_pred eEEEEEEEEcCCC--CEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEech
Confidence 4678889998876 89999999999999998889999999999963 46799999999999999999999854
Q ss_pred C----CCceEEEEEEeCCCCCCCceeEEEEEEccccCCC
Q 003882 112 I----QSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTR 146 (789)
Q Consensus 112 ~----~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~ 146 (789)
. ....|.|+|||++.++++++||++.++|.++..-
T Consensus 81 ~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 81 EQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred hhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 2 3578999999999998899999999999999854
No 118
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.70 E-value=4.7e-17 Score=151.33 Aligned_cols=118 Identities=25% Similarity=0.392 Sum_probs=98.7
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEcc--C
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKE--K 111 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~--~ 111 (789)
|...+++.|+..+ +.|.|+|++|+||+..+..|.+||||+|++.+ .+++|++++++.||+|||+|.|.+. .
T Consensus 2 G~l~~sl~y~~~~--~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~ 79 (136)
T cd08405 2 GELLLSLCYNPTA--NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLER 79 (136)
T ss_pred cEEEEEEEEcCCC--CeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHH
Confidence 4678999999987 99999999999999988889999999999842 3569999999999999999999974 3
Q ss_pred CCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCC
Q 003882 112 IQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRD 165 (789)
Q Consensus 112 ~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 165 (789)
.....|.|+|||++.++++++||++.+++... +...+ .|+++....+
T Consensus 80 ~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~-----~w~~~~~~~~ 126 (136)
T cd08405 80 LRETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELK-----HWKDMLSKPR 126 (136)
T ss_pred hCCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHH-----HHHHHHhCCC
Confidence 34568999999999999999999999999876 22122 6776655443
No 119
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.69 E-value=2.9e-16 Score=143.24 Aligned_cols=106 Identities=21% Similarity=0.262 Sum_probs=89.1
Q ss_pred EEEEEEEEEeecCCCCCCC-CCCCeEEEEEECC-----eEEeeecccCCCCCCccCceeEEEeeCC--CCCeEEEEEEEc
Q 003882 217 WYLRVNVIEAQDVEPLDKS-QLPQAFVEAQVGN-----QVLKTKLCPTRTTNPLWNEDLIFVAAEP--FEEQLVLTVENK 288 (789)
Q Consensus 217 ~~L~V~v~~ar~L~~~~~~-~~~dpyv~v~l~~-----~~~kT~~~~~~t~nP~wne~f~f~~~~~--~~~~l~i~V~d~ 288 (789)
+.|.|+|++|+||+..+.. +.+||||++++.. .++||+++++ +.||+|||+|.|.+... ....|.+.|||.
T Consensus 15 ~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~-t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~ 93 (128)
T cd08392 15 SCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKG-TVNPVFNETLKYVVEADLLSSRQLQVSVWHS 93 (128)
T ss_pred CEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccC-CCCCccceEEEEEcCHHHhCCcEEEEEEEeC
Confidence 4699999999999998875 8999999999962 3678999986 99999999999998543 456899999999
Q ss_pred cCCCCCCceEEEEEeccccccccCCCCCcceeEEcc
Q 003882 289 VTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLE 324 (789)
Q Consensus 289 d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~ 324 (789)
+..+++++||++.|+|+++.-. +......+||+|.
T Consensus 94 ~~~~~~~~lG~~~i~L~~~~~~-~~~~~~~~W~~l~ 128 (128)
T cd08392 94 RTLKRRVFLGEVLIPLADWDFE-DTDSQRFLWYPLN 128 (128)
T ss_pred CCCcCcceEEEEEEEcCCcccC-CCCccccceEECc
Confidence 9889999999999999988421 2244578999973
No 120
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.69 E-value=2.7e-16 Score=144.61 Aligned_cols=104 Identities=22% Similarity=0.288 Sum_probs=89.7
Q ss_pred ccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEEC-----CEEEeeccccCCCCCccccEEEEEEeCC---CceEEEEEE
Q 003882 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG-----LKWVRTRTLVDNFNPKWNEQYTWEVYDP---CTVITLGVF 451 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~ 451 (789)
.+.|+|+|++|+||+..+ ..+.+||||+|.+. ...+||++++++.||+|||.|.|.+... ...|.|.||
T Consensus 15 ~~~L~V~vi~a~~L~~~~---~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~ 91 (127)
T cd04030 15 RQKLIVTVHKCRNLPPCD---SSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVK 91 (127)
T ss_pred CCEEEEEEEEEECCCCcc---CCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEE
Confidence 369999999999999874 35789999999984 4679999999999999999999998642 468999999
Q ss_pred eCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEee
Q 003882 452 DNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPL 489 (789)
Q Consensus 452 d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 489 (789)
|.+.+. ...+++||.+.|+|.++..++....||+|
T Consensus 92 ~~~~~~---~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 92 NSKSFL---SREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred ECCccc---CCCCceEEEEEEecccccccCCccceEEC
Confidence 988741 12789999999999999888888999997
No 121
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.69 E-value=4.3e-16 Score=142.63 Aligned_cols=102 Identities=24% Similarity=0.255 Sum_probs=85.7
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEEC---CEEEeeccccCCCCCccccEEEEE-EeC---CCceEEEEEEeC
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG---LKWVRTRTLVDNFNPKWNEQYTWE-VYD---PCTVITLGVFDN 453 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~---~~~~~T~~~~~t~~P~wne~~~f~-v~~---~~~~l~v~v~d~ 453 (789)
+.|+|+|++|+||+..+. ..+.+||||+|.+. .++.||++++++.||.|||.|.|. +.. ....|.|+|||+
T Consensus 16 ~~L~V~Vi~a~~L~~~~~--~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~ 93 (128)
T cd08388 16 KALLVNIIECRDLPAMDE--QSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSF 93 (128)
T ss_pred CEEEEEEEEeECCCCCCC--CCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEc
Confidence 699999999999998742 13789999999884 456899999999999999999994 432 245799999999
Q ss_pred CCCCCCCCCCCCccEEEEEECcccccC--ceEeeeEee
Q 003882 454 CHLGGSGTKPDSRIGKVRIRLSTLEAD--RIYTHSYPL 489 (789)
Q Consensus 454 ~~~~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L 489 (789)
|.++ +|++||++.|+|+++... +....|.+|
T Consensus 94 d~~~-----~d~~lG~~~i~L~~l~~~~~~~~~~~~~~ 126 (128)
T cd08388 94 DRYS-----RDDVIGEVVCPLAGADLLNEGELLVSREI 126 (128)
T ss_pred CCCC-----CCceeEEEEEeccccCCCCCceEEEEEec
Confidence 9875 899999999999998654 678888886
No 122
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.69 E-value=5.7e-17 Score=150.32 Aligned_cols=118 Identities=20% Similarity=0.272 Sum_probs=98.6
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEcc--C
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKE--K 111 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~--~ 111 (789)
|..++++.|+... +.|.|+|++|+||+..+ .+.+||||+|.+.+ .+++|++++++.||+|||+|.|.+. +
T Consensus 2 G~i~~sl~y~~~~--~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~ 78 (137)
T cd08409 2 GDIQISLTYNPTL--NRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQ 78 (137)
T ss_pred cEEEEEEEECCCC--CeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHH
Confidence 4678999999977 89999999999999988 78899999999875 3569999999999999999999984 3
Q ss_pred CCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCC
Q 003882 112 IQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRR 164 (789)
Q Consensus 112 ~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 164 (789)
+....|.|+|||++..+++++||++.+.......+...+ +|..+....
T Consensus 79 l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~-----hW~~~~~~p 126 (137)
T cd08409 79 LDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELE-----HWNDMLSKP 126 (137)
T ss_pred hCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHH-----HHHHHHhCC
Confidence 455799999999999899999999999866555443333 676665543
No 123
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.69 E-value=7.6e-16 Score=172.19 Aligned_cols=444 Identities=16% Similarity=0.177 Sum_probs=252.9
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccC-CCCCeeccEEEEEc-----cCCCCceEEEEEEeCCCC
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEK-KSNPEWKQVFAFSK-----EKIQSSVLEVFVRDREIV 127 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~-t~nP~wne~f~f~~-----~~~~~~~l~v~V~d~~~~ 127 (789)
+.+.|--..-+|...........|-+.+.++++..++..|.+ -.||.++..|.+-+ .+.-...+.++|.|.+.+
T Consensus 363 ~~~evl~wgLrn~k~~~m~~~~~P~~~~e~g~e~v~s~~I~~~k~npnf~s~~~~~~v~lpd~e~Y~ppl~akvvd~~~f 442 (1105)
T KOG1326|consen 363 GKAELLMWGLRNPKKSGMASTFSPALLVEFGGERVSSFSIFNRKKNPNFPSRVLGRLVILPDEELYMPPLNAKVVDLRQF 442 (1105)
T ss_pred eeeehhhhhhcccccccccccCCcceeEeeCCceEeeeeehhhhhCCCCceeEEEEEEeccchHhhCccceeEEEecccc
Confidence 444444445566655555566789999999998877766655 45999997776653 122357899999999999
Q ss_pred CCCceeEEEEEE-ccccCCCCCCCCCCCC-----------------------eeEEc-----------------ccCCCC
Q 003882 128 GRDDYIGKVVFD-MNEVPTRVPPDSPLAP-----------------------QWYRL-----------------EDRRDD 166 (789)
Q Consensus 128 ~~d~~lG~~~i~-l~~l~~~~~~~~~~~~-----------------------~w~~L-----------------~~~~~~ 166 (789)
+....+|.|.+. +.....+......+.+ .|++. ....+.
T Consensus 443 g~~~v~g~c~i~~l~nf~c~p~~~~~~~Pq~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~w~k~~~~~~~ 522 (1105)
T KOG1326|consen 443 GRMEVVGQCKILSLYNFFCDPSAVNSITPQFASDPVSIMMGSTDNEIRHCNSSTLPASPHEDEEEREVDWWGKFYPSAEE 522 (1105)
T ss_pred cceeehhhhcchhhhhhccCchhhcccCcCCCCCchhhhcCCchhhhhhccccCCCCCccccccceehhhhhhccccccc
Confidence 999999999985 4444332111100000 01111 110000
Q ss_pred C------ccceEEEEEEEEeecCCCc---C--CccCCCCCcc-------cC---------------------CCcccccc
Q 003882 167 R------KVKGEVMLAVWIGTQADEA---F--PEAWHSDAAT-------VE---------------------GEGVFNIR 207 (789)
Q Consensus 167 ~------~~~G~l~l~~~~~~~~d~~---~--~~~~~~~~~~-------~~---------------------~~~~~~~~ 207 (789)
+ ..++...+.++ ...++. + .+.|..+... .. +......+
T Consensus 523 ~~k~~~~~~K~~~~LKiy--n~ele~v~ef~~l~D~~~~f~l~rG~~~~e~~e~~Ivg~fKgl~rIyp~~~~~~~p~~pr 600 (1105)
T KOG1326|consen 523 NAKWEVYEHKINVTLKIY--NMELEMVAEFRGLQDWAVTFKLYRGKEGLECLEQQIVGEFKGLFRIYPVPRNPSSPAPPR 600 (1105)
T ss_pred cccccccccccceEEEEe--hhhhhhHHHHhhhhhccceeEeeeccccCCCcccchhhhhhcceeeecCCCccCCCCChh
Confidence 0 00111111111 111110 0 0111111000 00 00000111
Q ss_pred cc---ccccCccEEEEEEEEEeecCCCCCCCCCCCeEEEEEECCeE--EeeecccCCCCCCccCceeEEEeeCCCCCeEE
Q 003882 208 SK---VYVSPKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQV--LKTKLCPTRTTNPLWNEDLIFVAAEPFEEQLV 282 (789)
Q Consensus 208 ~~---~~~~~~~~~L~V~v~~ar~L~~~~~~~~~dpyv~v~l~~~~--~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~ 282 (789)
.. ....|....++|.|++|-+|.+.|.+|.+||||.+.+|++. -+...+.+ |.||+|++.|.+....+....++
T Consensus 601 ~~~~~~~~~pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~-tlnPVfgkmfel~~~lp~ek~l~ 679 (1105)
T KOG1326|consen 601 HFLDLPKEEPIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPN-TLNPVFGKMFELECLLPFEKDLI 679 (1105)
T ss_pred hhhcccccCcceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcC-CCCcHHHHHHHhhcccchhhcce
Confidence 00 01136666799999999999999999999999999999876 55667776 99999999999999888899999
Q ss_pred EEEEEccCCCCCCceEEEEEeccc-cccccCCCCC---------cceeEEccccCcccc-----hhcccccccccceEEE
Q 003882 283 LTVENKVTPAKDEPLGRLRLSLNV-IERRLDHRPV---------HSKWFNLEKFGFGAL-----ELDKRHELKFSSRIHL 347 (789)
Q Consensus 283 i~V~d~d~~~~d~~iG~~~i~l~~-l~~~~~~~~~---------~~~w~~L~~~~~~~~-----~g~~~~~~~~~G~i~l 347 (789)
++|||+|..+.|+.||+..++|.+ +.+..+.+.. ...|..-.++++-.. .+.. .-.+.+.. .
T Consensus 680 v~vyd~D~~~~d~~iget~iDLEnR~~T~~~a~cglaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i~--~P~~~~e~-~ 756 (1105)
T KOG1326|consen 680 VEVYDHDLEAQDEKIGETTIDLENRWLTRHRARCGLAQTYCVSGANIWRDRMDPSQILKEHCQPGGIP--RPYYSYEV-S 756 (1105)
T ss_pred eEEEEeecccccchhhceehhhhhcccCcCCcccCccceeeeeccccccCccCHHHHHHHhhcccCCC--CCeecCCc-c
Confidence 999999999999999999999875 3333222221 334554443321000 0000 00000000 1
Q ss_pred EEEEcCcccc-------------------------------cCCcc----cccCCC---Ccccccc--------------
Q 003882 348 RVCLEGAYHV-------------------------------MDEST----MYISDQ---RPTARQL-------------- 375 (789)
Q Consensus 348 ~i~~~~~~~~-------------------------------~d~~~----~~~~d~---~~~~~~~-------------- 375 (789)
.+.+.|.... .-+.. ....+. .....++
T Consensus 757 ~i~~~g~~~~~d~~~~k~~~~~~L~~~~~r~~~~i~~~~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl 836 (1105)
T KOG1326|consen 757 AIKWKGESDIYDEKEAKTIEVPHLGNAWERLALWILMNQGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPL 836 (1105)
T ss_pred eEEecChhhhhcccccCCCCCcccchHHHHHHHHhhhhcCcCCcccccccccCccccchhhcccchhhhhcccccCCCCC
Confidence 1111110000 00000 000000 0000011
Q ss_pred ----cCCCccEEEEEEEEccCCCCCccC-CCCCCcCcEEEEEEC-C--EEEeeccccCCC----CCccccEEEEEEe---
Q 003882 376 ----WKQPIGILEVGILSAQGLLPMKTR-DGRGTTDAYCVAKYG-L--KWVRTRTLVDNF----NPKWNEQYTWEVY--- 440 (789)
Q Consensus 376 ----~~~~~g~l~v~v~~a~~L~~~~~~-~~~~~~dpyv~v~~~-~--~~~~T~~~~~t~----~P~wne~~~f~v~--- 440 (789)
..+..-.++|.|-.-.+....+.. .+...+|-||.=.+- . .+.+|.+.++++ |-.|.-.|-|.-.
T Consensus 837 ~itpr~~~~~~lrviiWnt~~v~l~dd~~~ge~~sdIyv~gw~~gdee~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae 916 (1105)
T KOG1326|consen 837 NITPRKPKKYELRVIIWNTDKVRLNDDEITGEKMSDIYVKGWVLGDEEEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAE 916 (1105)
T ss_pred CCCCCChhheeEEEEEeeccceeecCccceeeeccceEEecccccchhhhcccceeeeeccCCcccceeeecccccchHh
Confidence 122345788888777776654432 124468999998763 3 457888877654 5666443333110
Q ss_pred ---------------C----CCceEEEEEEeCCCCCCCCCCCCCccEEEEEECccccc----------------------
Q 003882 441 ---------------D----PCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEA---------------------- 479 (789)
Q Consensus 441 ---------------~----~~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~---------------------- 479 (789)
+ .-..|.|+|||.|.++ +|++||...++|+++..
T Consensus 917 ~~~vi~kke~~ws~dete~k~p~rl~iqiWD~d~fs-----~Dd~Lg~lELdL~~~~~pa~sa~~c~~~~~~~~~vslFe 991 (1105)
T KOG1326|consen 917 QLCVIAKKEYSWSLDETEFKIPARLIIQIWDNDKFS-----KDDFLGALELDLSDMPAPAKSAKKCSLYMKKDKTVSLFE 991 (1105)
T ss_pred hHhhhhhhhhccccccccccCchheEEEecccCccC-----hhhhhhheeechhhCcCCCCCHHHCCceeccCcceehhh
Confidence 0 1246999999999997 99999999999998652
Q ss_pred CceEeeeEeeeecCCCCCccceEEEEEEE
Q 003882 480 DRIYTHSYPLLVLNPSGVKKMGELQLAVR 508 (789)
Q Consensus 480 ~~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 508 (789)
.+.+..|||+.........-+|++++++.
T Consensus 992 ~k~v~GWwP~~a~~~~~~~l~Gkvem~le 1020 (1105)
T KOG1326|consen 992 QKTVKGWWPCQAEEGDAKVLAGKVEMSLE 1020 (1105)
T ss_pred cccccccceeeecCCCcceecceeeeehh
Confidence 23567999998764322233799888764
No 124
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.69 E-value=7.2e-17 Score=149.42 Aligned_cols=119 Identities=19% Similarity=0.331 Sum_probs=97.1
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccC--
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEK-- 111 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~-- 111 (789)
|...+++.|.... +.|.|+|++|+||+..+..|.+||||+|++.+ .+++|+++++|.||+|||+|.|.+..
T Consensus 1 G~i~~~l~y~~~~--~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~ 78 (135)
T cd08410 1 GELLLSLNYLPSA--GRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEE 78 (135)
T ss_pred CcEEEEEEECCCC--CeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHH
Confidence 3568899999877 99999999999999999889999999999843 35799999999999999999999843
Q ss_pred CCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCC
Q 003882 112 IQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRD 165 (789)
Q Consensus 112 ~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 165 (789)
.....|.|+|||++..+++++||++.|.......+. ..+|+.|....+
T Consensus 79 l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~~~------~~~W~~l~~~~~ 126 (135)
T cd08410 79 LENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGPSE------TNHWRRMLNSQR 126 (135)
T ss_pred hCCCEEEEEEEeCCCCCCCcEEEEEEEcCccCCchH------HHHHHHHHhCCC
Confidence 334579999999999999999999986643332211 127888877654
No 125
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.68 E-value=5.7e-16 Score=143.59 Aligned_cols=118 Identities=19% Similarity=0.336 Sum_probs=96.7
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCC----------CceEEEEEE
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDP----------CTVITLGVF 451 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~----------~~~l~v~v~ 451 (789)
.|+|+|++|++|+.++ ..|.+||||+|.++++..||+++++|+||.|||.|.|.+... ...|.|+||
T Consensus 2 ~l~v~V~~a~~L~~~d---~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~ 78 (135)
T cd04017 2 QLRAYIYQARDLLAAD---KSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF 78 (135)
T ss_pred EEEEEEEEeecCcCCC---CCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence 6899999999999874 457899999999999999999999999999999999986431 257999999
Q ss_pred eCCCCCCCCCCCCCccEEEEE-ECccccc---CceEeeeEeeeecCCCCCccceEEEEEEEEee
Q 003882 452 DNCHLGGSGTKPDSRIGKVRI-RLSTLEA---DRIYTHSYPLLVLNPSGVKKMGELQLAVRFTC 511 (789)
Q Consensus 452 d~~~~~~~~~~~d~~lG~~~i-~l~~l~~---~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 511 (789)
|++..+ +|++||++.+ ++..+.. +.....|++|... | ...|+|.|++.+.+
T Consensus 79 d~d~~~-----~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~---~-~~~Geil~~~~~~~ 133 (135)
T cd04017 79 DQDSVG-----KDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKG---G-QSAGELLAAFELIE 133 (135)
T ss_pred eCcCCC-----CCccceEEEeeeeeecccCCCCCCCceEEEeecC---C-CchhheeEEeEEEE
Confidence 999875 7899999987 4444442 3566899999632 2 25699999988764
No 126
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.68 E-value=7e-16 Score=141.71 Aligned_cols=118 Identities=24% Similarity=0.369 Sum_probs=98.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-------------eeeeeccccCCCCCee-ccEEEEEccCCCCceEEEE
Q 003882 55 YLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-------------YKGKTRHFEKKSNPEW-KQVFAFSKEKIQSSVLEVF 120 (789)
Q Consensus 55 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-------------~~~~T~~~~~t~nP~w-ne~f~f~~~~~~~~~l~v~ 120 (789)
...|++++|+||+ ++..|++||||++.+.+ ++++|+++++|.||+| ||+|.|.+.. .+.|.|+
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~--~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP--TDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC--CCEEEEE
Confidence 3679999999998 67789999999999963 3689999999999999 9999999853 4789999
Q ss_pred EEeCCCCCC---CceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEE
Q 003882 121 VRDREIVGR---DDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAV 177 (789)
Q Consensus 121 V~d~~~~~~---d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~ 177 (789)
|||++..++ +++||++.+++.++....... ....||+|+.....+...|+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~--~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIG--DQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccccCC--ceEEEEECCcCCCCCcEEEEEEEEe
Confidence 999876443 799999999999998764322 2448999998876678899998865
No 127
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.68 E-value=2.5e-16 Score=147.00 Aligned_cols=100 Identities=28% Similarity=0.529 Sum_probs=88.2
Q ss_pred CceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-----------------------------eeeeccccCCCCCee
Q 003882 51 EQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNY-----------------------------KGKTRHFEKKSNPEW 101 (789)
Q Consensus 51 ~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-----------------------------~~~T~~~~~t~nP~w 101 (789)
.+.+.|.|+|++|+||...|..|.+||||+|.+.+. .++|+++.+|.||.|
T Consensus 25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W 104 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW 104 (153)
T ss_pred CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence 356899999999999999999999999999999642 368999999999999
Q ss_pred ccEEEEEccCCCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEc
Q 003882 102 KQVFAFSKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRL 160 (789)
Q Consensus 102 ne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 160 (789)
||+|.|.+..+....|.|+|||++ +++||++.+++.++... ..+ .||+|
T Consensus 105 nE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~~-~~d-----~W~~L 153 (153)
T cd08676 105 NETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPSC-GLD-----SWFKL 153 (153)
T ss_pred ccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCCC-CCC-----CeEeC
Confidence 999999997766789999999997 88999999999999843 233 99987
No 128
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.68 E-value=4.2e-16 Score=141.04 Aligned_cols=94 Identities=26% Similarity=0.279 Sum_probs=83.7
Q ss_pred ceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccC-CCCceEEEEEEeCCCCCCC
Q 003882 52 QMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEK-IQSSVLEVFVRDREIVGRD 130 (789)
Q Consensus 52 ~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~-~~~~~l~v~V~d~~~~~~d 130 (789)
.++.|.|+|++|++|+. +..+.+||||+|+++++++||++++++.||+|||+|.|.... .....|.|+|||++.+++|
T Consensus 26 ~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~d 104 (127)
T cd04032 26 GLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDD 104 (127)
T ss_pred CcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCC
Confidence 45899999999999984 567889999999999999999999999999999999997533 3468999999999999999
Q ss_pred ceeEEEEEEccccCCC
Q 003882 131 DYIGKVVFDMNEVPTR 146 (789)
Q Consensus 131 ~~lG~~~i~l~~l~~~ 146 (789)
++||++.++|.....+
T Consensus 105 d~IG~~~i~l~~~~~~ 120 (127)
T cd04032 105 DLLGTCSVVPEAGVHE 120 (127)
T ss_pred CeeEEEEEEecCCcee
Confidence 9999999999976643
No 129
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.68 E-value=2.2e-16 Score=146.15 Aligned_cols=103 Identities=30% Similarity=0.532 Sum_probs=91.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEC----CeeeeeccccCCCCCeeccEEEEEccCC---------------CCce
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLG----NYKGKTRHFEKKSNPEWKQVFAFSKEKI---------------QSSV 116 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~----~~~~~T~~~~~t~nP~wne~f~f~~~~~---------------~~~~ 116 (789)
|.|+|++|+||+.+ ..|.+||||+|+++ .+.++|+++.++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 78899999999998 6788999999999999999999998654 4678
Q ss_pred EEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCC
Q 003882 117 LEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRR 164 (789)
Q Consensus 117 l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 164 (789)
|.|+|||++..++++|||++.+++.++....... .||+|++..
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~-----~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQ-----AWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCccc-----ceEecCCcC
Confidence 9999999999889999999999999998654444 999999875
No 130
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.68 E-value=4.8e-16 Score=142.46 Aligned_cols=103 Identities=25% Similarity=0.339 Sum_probs=89.5
Q ss_pred ccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE---CCEEEeeccccCCCCCccccEEEEEEeC----CCceEEEEEEe
Q 003882 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY---GLKWVRTRTLVDNFNPKWNEQYTWEVYD----PCTVITLGVFD 452 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~---~~~~~~T~~~~~t~~P~wne~~~f~v~~----~~~~l~v~v~d 452 (789)
.+.|.|+|++|+||+.++ ..+.+||||++.+ +++..+|++++++.||.|||.|.|.+.. ....|.|+|||
T Consensus 15 ~~~L~v~v~~a~~L~~~d---~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d 91 (125)
T cd08386 15 ESTLTLKILKAVELPAKD---FSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLD 91 (125)
T ss_pred CCEEEEEEEEecCCCCcc---CCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEe
Confidence 369999999999999874 3578999999998 4567999999999999999999998542 24579999999
Q ss_pred CCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeee
Q 003882 453 NCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490 (789)
Q Consensus 453 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 490 (789)
++..+ ++++||++.++++++..+.....|++|.
T Consensus 92 ~d~~~-----~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 92 YDRFS-----RNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred CCCCc-----CCcEeeEEEEecccccCCCCcceEEecC
Confidence 99875 7899999999999999888889999984
No 131
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.68 E-value=2.1e-16 Score=142.78 Aligned_cols=105 Identities=17% Similarity=0.204 Sum_probs=89.5
Q ss_pred CCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE--C----CEEEeeccccCCCCCccccEEEEEEeC---CCceEE
Q 003882 377 KQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY--G----LKWVRTRTLVDNFNPKWNEQYTWEVYD---PCTVIT 447 (789)
Q Consensus 377 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~--~----~~~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~ 447 (789)
.+..+.|.|.|++|+||++++ ..+.+||||++.+ + ..+.||+++++++||+|||.|.|++.. ....|.
T Consensus 10 ~~~~~~L~V~V~~arnL~~~~---~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~ 86 (124)
T cd08680 10 DSGDSSLVISVEQLRNLSALS---IPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQ 86 (124)
T ss_pred CCCCCEEEEEEeEecCCcccc---cCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEE
Confidence 444579999999999999874 4578999999998 2 247999999999999999999999875 367999
Q ss_pred EEEEeCCCCCCCCCCCCCccEEEEEECcccccC-ceEeeeEee
Q 003882 448 LGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEAD-RIYTHSYPL 489 (789)
Q Consensus 448 v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L 489 (789)
|+|||.+..+ ++++||.+.|+|+++... ....+||+|
T Consensus 87 ~~V~~~~~~~-----~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 87 VDVCSVGPDQ-----QEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred EEEEeCCCCC-----ceeEEEEEEEEhhhccCCCccccccccC
Confidence 9999999875 789999999999999654 357889875
No 132
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.68 E-value=8.1e-17 Score=149.72 Aligned_cols=117 Identities=29% Similarity=0.355 Sum_probs=98.2
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccC--
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEK-- 111 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~-- 111 (789)
|...+++.|.... +.|.|+|++|++|+..+..|.+||||+|++.+ .+++|++++++.||+|||+|.|.+..
T Consensus 2 G~l~~~l~y~~~~--~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~ 79 (136)
T cd08402 2 GDICFSLRYVPTA--GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQ 79 (136)
T ss_pred cEEEEEeEEcCCC--CeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHH
Confidence 4678899999987 99999999999999999899999999999953 35689999999999999999999753
Q ss_pred CCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCC
Q 003882 112 IQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRR 164 (789)
Q Consensus 112 ~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 164 (789)
.....|.|+|||++.++++++||++.+++.... ... ..|+++....
T Consensus 80 l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~~--~~~-----~~W~~~~~~~ 125 (136)
T cd08402 80 IQKVHLIVTVLDYDRIGKNDPIGKVVLGCNATG--AEL-----RHWSDMLASP 125 (136)
T ss_pred hCCCEEEEEEEeCCCCCCCceeEEEEECCccCC--hHH-----HHHHHHHhCC
Confidence 234589999999999999999999999997642 222 2777776554
No 133
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.68 E-value=3.6e-16 Score=142.94 Aligned_cols=106 Identities=23% Similarity=0.319 Sum_probs=94.8
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccC-CCCCeeccEEEEEccCC---CCceEEEEEEeCCCCCC
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEK-KSNPEWKQVFAFSKEKI---QSSVLEVFVRDREIVGR 129 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~-t~nP~wne~f~f~~~~~---~~~~l~v~V~d~~~~~~ 129 (789)
|.|.|+|++|++|+..+..+.+||||+|+++++.++|+++.+ +.||+|||+|.|.+... ....|.|+|||++.+++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 579999999999999888889999999999998889998875 89999999999999765 35789999999999989
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCeeEEcccCC
Q 003882 130 DDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRR 164 (789)
Q Consensus 130 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 164 (789)
+++||++.+++.++..+...+ .|+.|.+..
T Consensus 81 d~~iG~~~i~l~~l~~~~~~~-----~~~~l~p~~ 110 (124)
T cd04049 81 DDFIGEATIHLKGLFEEGVEP-----GTAELVPAK 110 (124)
T ss_pred CCeEEEEEEEhHHhhhCCCCc-----CceEeeccc
Confidence 999999999999998865554 899998754
No 134
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.68 E-value=4.9e-16 Score=141.55 Aligned_cols=118 Identities=24% Similarity=0.337 Sum_probs=95.4
Q ss_pred EEEEEEEccCCCCCccCCCCCCcCcEEEEEEC-CEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCC
Q 003882 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG-LKWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGSGT 461 (789)
Q Consensus 383 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~-~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~~ 461 (789)
|+|+|++|+||+.++ ..+.+||||++.++ .+.+||+++++++||.|||.|.|.+.. ...|.|+|||++.++ .
T Consensus 2 l~v~v~~A~~L~~~~---~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~---~ 74 (123)
T cd08382 2 VRLTVLCADGLAKRD---LFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFK---K 74 (123)
T ss_pred eEEEEEEecCCCccC---CCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCC---C
Confidence 789999999999874 35789999999996 678999999999999999999999975 789999999998864 1
Q ss_pred CCCCccEEEEEECcccccCc-eEeeeEeeeecCCC-CCccceEEEEEE
Q 003882 462 KPDSRIGKVRIRLSTLEADR-IYTHSYPLLVLNPS-GVKKMGELQLAV 507 (789)
Q Consensus 462 ~~d~~lG~~~i~l~~l~~~~-~~~~~~~L~~~~~~-g~~~~G~i~l~~ 507 (789)
..|++||++.++++++.... ....|++|...... +....|+|.+++
T Consensus 75 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 75 KDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred CCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 12689999999999987544 33679999655432 222368888764
No 135
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.68 E-value=5.8e-16 Score=141.53 Aligned_cols=103 Identities=22% Similarity=0.348 Sum_probs=89.0
Q ss_pred ccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEEC--C---EEEeeccccCCCCCccccEEEEEEeCC---CceEEEEEE
Q 003882 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG--L---KWVRTRTLVDNFNPKWNEQYTWEVYDP---CTVITLGVF 451 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~--~---~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~ 451 (789)
.|.|.|+|++|+||+.++. ..+.+||||+|.+. + ...+|++++++.||+|||.|.|.+... ...|.|+||
T Consensus 13 ~~~L~V~v~~a~~L~~~~~--~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~ 90 (123)
T cd08521 13 TGSLEVHIKECRNLAYADE--KKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVW 90 (123)
T ss_pred CCEEEEEEEEecCCCCcCC--CCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence 4799999999999998751 35789999999883 1 468999999999999999999998752 568999999
Q ss_pred eCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEee
Q 003882 452 DNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPL 489 (789)
Q Consensus 452 d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 489 (789)
|++..+ ++++||.+.++|+++..+.....||+|
T Consensus 91 d~~~~~-----~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 91 HHDRFG-----RNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred eCCCCc-----CCceeeEEEEecccccccCCCccEEEC
Confidence 999875 789999999999999877778999986
No 136
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.68 E-value=3.9e-16 Score=144.21 Aligned_cols=116 Identities=29% Similarity=0.485 Sum_probs=100.8
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccCC-
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEKI- 112 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~~- 112 (789)
|.+.++++|+. +.|.|+|++|+||+..+..+.+||||+|.+.+ ..++|+++.++.||.|||+|.|.+...
T Consensus 2 g~~~~~~~~~~----~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~ 77 (131)
T cd04026 2 GRIYLKISVKD----NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPAD 77 (131)
T ss_pred cEEEEEEEECC----CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchh
Confidence 45677888877 67999999999999988888999999999974 578999999999999999999998653
Q ss_pred CCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCC
Q 003882 113 QSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRR 164 (789)
Q Consensus 113 ~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 164 (789)
....|.|+|||++..+++++||++.++++++... ..+ .||+|.+..
T Consensus 78 ~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~-----~w~~L~~~~ 123 (131)
T cd04026 78 KDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVD-----GWYKLLNQE 123 (131)
T ss_pred cCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccC-----ceEECcCcc
Confidence 3578999999999988999999999999999865 333 899998764
No 137
>PLN03008 Phospholipase D delta
Probab=99.67 E-value=2.6e-16 Score=177.26 Aligned_cols=127 Identities=23% Similarity=0.353 Sum_probs=109.6
Q ss_pred cEEEEEEEEccCCCCCccC------------------------------CC---------CCCcCcEEEEEECCE-EEee
Q 003882 381 GILEVGILSAQGLLPMKTR------------------------------DG---------RGTTDAYCVAKYGLK-WVRT 420 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~------------------------------~~---------~~~~dpyv~v~~~~~-~~~T 420 (789)
|.|.++|++|++|++||.. .+ .+++||||+|.++++ ..||
T Consensus 14 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~RT 93 (868)
T PLN03008 14 GDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLART 93 (868)
T ss_pred cccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceeeE
Confidence 7899999999999874431 01 357899999999876 5799
Q ss_pred ccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccc
Q 003882 421 RTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKM 500 (789)
Q Consensus 421 ~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~ 500 (789)
++++++.||+|||.|.|.+.++...|+|+|+|+|.++ +++||.+.|||.++..|...+.|++|.....+..+..
T Consensus 94 rVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g------aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~ 167 (868)
T PLN03008 94 RVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG------AQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAE 167 (868)
T ss_pred EeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC------CceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCC
Confidence 9999999999999999999998889999999999984 5899999999999999999999999987765555567
Q ss_pred eEEEEEEEEeecC
Q 003882 501 GELQLAVRFTCLS 513 (789)
Q Consensus 501 G~i~l~~~f~~~~ 513 (789)
|+|+|+++|.|..
T Consensus 168 ~kl~v~lqf~pv~ 180 (868)
T PLN03008 168 TAIFIDMKFTPFD 180 (868)
T ss_pred cEEEEEEEEEEcc
Confidence 8999999998763
No 138
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.67 E-value=1.1e-16 Score=148.86 Aligned_cols=119 Identities=29% Similarity=0.374 Sum_probs=102.3
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-----eeeeccccCCCCCeeccEEEEEccCC-
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNY-----KGKTRHFEKKSNPEWKQVFAFSKEKI- 112 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-----~~~T~~~~~t~nP~wne~f~f~~~~~- 112 (789)
|..++++.|+... +.|.|+|++|+||+..+..+.+||||++++.+. .++|+++.++.||.|||+|.|.+...
T Consensus 1 G~i~~~l~y~~~~--~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~ 78 (134)
T cd00276 1 GELLLSLSYLPTA--ERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQ 78 (134)
T ss_pred CeEEEEEEeeCCC--CEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHH
Confidence 3578999999887 899999999999999888889999999999753 56999999999999999999998654
Q ss_pred -CCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCC
Q 003882 113 -QSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDD 166 (789)
Q Consensus 113 -~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~ 166 (789)
....|.|+|||++..+++++||++.+++.+ .+...+ .|++|....++
T Consensus 79 l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~-----~W~~l~~~~~~ 126 (134)
T cd00276 79 LEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELE-----HWNEMLASPRK 126 (134)
T ss_pred hCCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHH-----HHHHHHhCCCC
Confidence 357899999999998899999999999999 333333 89999887543
No 139
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.67 E-value=7.1e-16 Score=140.43 Aligned_cols=101 Identities=19% Similarity=0.201 Sum_probs=87.9
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE---CCEEEeeccccCCCCCccccEEEEE-EeC---CCceEEEEEEeC
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY---GLKWVRTRTLVDNFNPKWNEQYTWE-VYD---PCTVITLGVFDN 453 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~---~~~~~~T~~~~~t~~P~wne~~~f~-v~~---~~~~l~v~v~d~ 453 (789)
+.|.|+|++|+||++.+ ..+.+||||++.+ ..++.||+++++ .||+|||.|.|+ +.. ....|.|+|||+
T Consensus 16 ~~L~V~Vi~a~nL~~~~---~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~ 91 (124)
T cd08389 16 RKLTVTVIRAQDIPTKD---RGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGV 91 (124)
T ss_pred CEEEEEEEEecCCCchh---cCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEEC
Confidence 69999999999999874 3578999999876 245789999888 999999999998 543 356899999999
Q ss_pred CCCCCCCCCCCCccEEEEEECcccccCceEeeeEeee
Q 003882 454 CHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490 (789)
Q Consensus 454 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 490 (789)
+.++ ++++||.+.|+|+++..+.....||+|.
T Consensus 92 ~~~~-----~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 92 ERMR-----KERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred CCcc-----cCceEEEEEEeccccCCCCCceEEEeCC
Confidence 9876 8899999999999999888889999984
No 140
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.67 E-value=1.2e-15 Score=142.11 Aligned_cols=119 Identities=18% Similarity=0.300 Sum_probs=97.0
Q ss_pred EEEEEEEeeC--CCCCCCCCCCCcEEEEEE--C---CeeeeeccccCCCCCeeccEEEEEccCC--------CCceEEEE
Q 003882 56 LYVRVEKARD--LPTNPVSGSCDPYVEVKL--G---NYKGKTRHFEKKSNPEWKQVFAFSKEKI--------QSSVLEVF 120 (789)
Q Consensus 56 L~V~v~~a~~--L~~~~~~g~~dpyv~v~~--~---~~~~~T~~~~~t~nP~wne~f~f~~~~~--------~~~~l~v~ 120 (789)
..++|..|++ |+..+..+.+||||++++ . .++.||+++++|+||+|||+|.|.+... ....|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 4556666666 777777889999999997 2 3688999999999999999999998543 25679999
Q ss_pred EEeCCCC-CCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEee
Q 003882 121 VRDREIV-GRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGT 181 (789)
Q Consensus 121 V~d~~~~-~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 181 (789)
|||++.+ .+|++||++.++|+.+....... .|++|.+.. ....|.|.+.+.+..
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~-----~~~~L~~~~--k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIH-----ESVDLMDGR--KATGGKLEVKVRLRE 138 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcce-----EEEEhhhCC--CCcCCEEEEEEEecC
Confidence 9999986 57999999999999998775544 799998533 356899999998864
No 141
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.67 E-value=4.1e-16 Score=144.88 Aligned_cols=92 Identities=32% Similarity=0.474 Sum_probs=86.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCcee
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYI 133 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~l 133 (789)
|.|.|+|++|+||+..+. +.+||||+++++++.++|++++++.||+|||+|.|.+.++ ...|.|+|||++.+++|++|
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~dd~i 79 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSKDDSM 79 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCCCCEE
Confidence 789999999999999887 8899999999999999999999999999999999999877 68999999999999999999
Q ss_pred EEEEEEccccCCCC
Q 003882 134 GKVVFDMNEVPTRV 147 (789)
Q Consensus 134 G~~~i~l~~l~~~~ 147 (789)
|++.+++.++....
T Consensus 80 G~a~i~l~~l~~~~ 93 (145)
T cd04038 80 GEAEIDLEPLVEAA 93 (145)
T ss_pred EEEEEEHHHhhhhh
Confidence 99999999998764
No 142
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.67 E-value=5.2e-16 Score=137.22 Aligned_cols=102 Identities=26% Similarity=0.443 Sum_probs=91.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCeEEEEEECCeEEeeecccCCCCCCccCceeEEEeeCCCCCeEEEEEEEccCCCCCCceE
Q 003882 219 LRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTRTTNPLWNEDLIFVAAEPFEEQLVLTVENKVTPAKDEPLG 298 (789)
Q Consensus 219 L~V~v~~ar~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~d~~~~d~~iG 298 (789)
|.|+|++|++|+..+..+.+||||+++++++.++|+++++ +.||.|||.|.|.+..+..+.|.|+|+|++. +++||
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~-t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG 77 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKER-TNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG 77 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccC-CCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence 7899999999999988899999999999999999999986 9999999999999988777899999999875 88999
Q ss_pred EEEEeccccccccCCCCCcceeEEcccc
Q 003882 299 RLRLSLNVIERRLDHRPVHSKWFNLEKF 326 (789)
Q Consensus 299 ~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 326 (789)
++.++|.++... .....+.||+|.+.
T Consensus 78 ~~~i~l~~l~~~--~~~~~~~w~~L~~~ 103 (105)
T cd04050 78 SLTLPLSELLKE--PDLTLDQPFPLDNS 103 (105)
T ss_pred EEEEEHHHhhcc--ccceeeeeEecCCC
Confidence 999999998753 23457899999875
No 143
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.67 E-value=6.1e-16 Score=139.89 Aligned_cols=104 Identities=28% Similarity=0.403 Sum_probs=93.6
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCce
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-YKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDY 132 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~ 132 (789)
|.|.|+|++|++|+..+..+.+||||+|.+++ ..++|+++.++.||+|||+|.|.+... .+.|.|+|||++..++|++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d~~ 79 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKDRS 79 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCCCe
Confidence 57999999999999998889999999999987 468999999999999999999998765 4799999999999999999
Q ss_pred eEEEEEEccccCCCCCCCCCCCCeeEEcccCC
Q 003882 133 IGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRR 164 (789)
Q Consensus 133 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 164 (789)
||++.+++.++... ..+ .||.|.+..
T Consensus 80 IG~~~~~l~~l~~~-~~~-----~~~~~~~~~ 105 (120)
T cd04045 80 LGSVEINVSDLIKK-NED-----GKYVEYDDE 105 (120)
T ss_pred eeEEEEeHHHhhCC-CCC-----ceEEecCCC
Confidence 99999999999987 334 899998865
No 144
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.67 E-value=1.7e-16 Score=147.18 Aligned_cols=118 Identities=24% Similarity=0.303 Sum_probs=97.5
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccC--
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEK-- 111 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~-- 111 (789)
|...+++.|.... +.|.|+|++|++|+..+..|.+||||+|++.+ ..++|++++++.||+|||+|.|.+..
T Consensus 1 g~l~~~~~y~~~~--~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~ 78 (134)
T cd08403 1 GELMFSLCYLPTA--GRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPEN 78 (134)
T ss_pred CeEEEEEEEcCCC--CEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHH
Confidence 3578999999887 99999999999999999899999999999853 25699999999999999999999743
Q ss_pred CCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCC
Q 003882 112 IQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRD 165 (789)
Q Consensus 112 ~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 165 (789)
.....|.|+|||++.++++++||++.+++... +...+ .|+.+....+
T Consensus 79 ~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~~~--~~~~~-----~w~~~~~~~~ 125 (134)
T cd08403 79 VDNVSLIIAVVDYDRVGHNELIGVCRVGPNAD--GQGRE-----HWNEMLANPR 125 (134)
T ss_pred hCCCEEEEEEEECCCCCCCceeEEEEECCCCC--CchHH-----HHHHHHHCCC
Confidence 33457999999999999999999999987632 22222 6877765543
No 145
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.67 E-value=2.8e-16 Score=140.44 Aligned_cols=99 Identities=26% Similarity=0.386 Sum_probs=85.6
Q ss_pred cEEEEEEEEccCCCCCccCCCC-CCcCcEEEEEEC---CEEEeeccccCCCCCccccEEEEEEeCC----CceEEEEEEe
Q 003882 381 GILEVGILSAQGLLPMKTRDGR-GTTDAYCVAKYG---LKWVRTRTLVDNFNPKWNEQYTWEVYDP----CTVITLGVFD 452 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~-~~~dpyv~v~~~---~~~~~T~~~~~t~~P~wne~~~f~v~~~----~~~l~v~v~d 452 (789)
|.|+|+|++|+||+.++ .. +.+||||+|.+. ....+|+++++++||+|||.|.|.+..+ ...|.|+|||
T Consensus 1 G~L~V~v~~a~~L~~~d---~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d 77 (111)
T cd04041 1 GVLVVTIHRATDLPKAD---FGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWD 77 (111)
T ss_pred CEEEEEEEEeeCCCccc---CCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEe
Confidence 78999999999999874 34 789999999983 3568999999999999999999988653 5689999999
Q ss_pred CCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeee
Q 003882 453 NCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490 (789)
Q Consensus 453 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 490 (789)
+|.++ .|++||++.++++++... ..|+++.
T Consensus 78 ~d~~~-----~dd~lG~~~i~l~~l~~~---~~~~~~~ 107 (111)
T cd04041 78 SDRFT-----ADDRLGRVEIDLKELIED---RNWMGRR 107 (111)
T ss_pred CCCCC-----CCCcceEEEEEHHHHhcC---CCCCccc
Confidence 99876 789999999999999843 5788874
No 146
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.66 E-value=1.4e-15 Score=139.67 Aligned_cols=113 Identities=24% Similarity=0.366 Sum_probs=95.9
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC---EEEeeccccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCCC
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL---KWVRTRTLVDNFNPKWNEQYTWEVYDP-CTVITLGVFDNCHLG 457 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~---~~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~~~ 457 (789)
.++|+|++|+||+.++ ..+.+||||++.+++ ...||++++++.||.|||.|.|.+... ...|.|+|||++..+
T Consensus 2 ~~~V~v~~a~~L~~~~---~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~ 78 (126)
T cd04043 2 LFTIRIVRAENLKADS---SNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVG 78 (126)
T ss_pred EEEEEEEEeECCCCCC---CCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCC
Confidence 6899999999999874 457899999998854 468999999999999999999999874 578999999999875
Q ss_pred CCCCCCCCccEEEEEECccccc---CceEeeeEeeeecCCCCCccceEEEEEEEEe
Q 003882 458 GSGTKPDSRIGKVRIRLSTLEA---DRIYTHSYPLLVLNPSGVKKMGELQLAVRFT 510 (789)
Q Consensus 458 ~~~~~~d~~lG~~~i~l~~l~~---~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 510 (789)
++++||++.++|+++.. +.....|++|. ..|+|++++.+.
T Consensus 79 -----~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~--------~~g~i~l~~~~~ 121 (126)
T cd04043 79 -----KHDLCGRASLKLDPKRFGDDGLPREIWLDLD--------TQGRLLLRVSME 121 (126)
T ss_pred -----CCceEEEEEEecCHHHcCCCCCCceEEEEcC--------CCCeEEEEEEEe
Confidence 78999999999998643 34568999995 249999988764
No 147
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.66 E-value=8.7e-16 Score=138.51 Aligned_cols=112 Identities=28% Similarity=0.429 Sum_probs=97.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCceeE
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGN-YKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYIG 134 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~lG 134 (789)
|.|+|++|++|+..+..+.+||||+|.+++ ..++|+++.++.||.|||+|.|.+.......+.|+|||++..+++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 579999999999988888999999999986 4579999999999999999999987655689999999999988999999
Q ss_pred EEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEE
Q 003882 135 KVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVM 174 (789)
Q Consensus 135 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~ 174 (789)
++.+++.++..+...+ .|++|.+..+ ...|.|.
T Consensus 81 ~~~~~l~~l~~~~~~~-----~~~~L~~~g~--~~~~~~~ 113 (115)
T cd04040 81 SAYIDLSDLEPEETTE-----LTLPLDGQGG--GKLGAVF 113 (115)
T ss_pred EEEEEHHHcCCCCcEE-----EEEECcCCCC--ccCceEE
Confidence 9999999998865545 8999987654 3456654
No 148
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.66 E-value=9.1e-16 Score=146.04 Aligned_cols=128 Identities=19% Similarity=0.247 Sum_probs=100.5
Q ss_pred cceEEEEEEEcCcccccCCcccccCCCCcccccccCCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE-----CCE
Q 003882 342 SSRIHLRVCLEGAYHVMDESTMYISDQRPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY-----GLK 416 (789)
Q Consensus 342 ~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~-----~~~ 416 (789)
+|+|.+.+.+.... .+.+ +. ....+.|.|.|+|++|+||+..+ ..+.+||||+|.+ +.+
T Consensus 1 ~G~l~~~l~y~~~~--~~~~--------~~---~~~~~~g~L~V~Vi~A~nL~~~d---~~g~~DPYVkv~l~~~~~~~~ 64 (162)
T cd04020 1 RGELKVALKYVPPE--SEGA--------LK---SKKPSTGELHVWVKEAKNLPALK---SGGTSDSFVKCYLLPDKSKKS 64 (162)
T ss_pred CceEEEEEEecCcc--cccc--------cc---ccCCCCceEEEEEEeeeCCCCCC---CCCCCCCEEEEEEEcCCCCCc
Confidence 48888888865421 0000 00 01345699999999999999874 3578999999988 335
Q ss_pred EEeeccccCCCCCccccEEEEEEeC----CCceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeee
Q 003882 417 WVRTRTLVDNFNPKWNEQYTWEVYD----PCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490 (789)
Q Consensus 417 ~~~T~~~~~t~~P~wne~~~f~v~~----~~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 490 (789)
..||++++++.||.|||.|.|.+.. ....|.|+|||++.++ ++++||++.+++.++........|+.+.
T Consensus 65 ~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~-----~d~~lG~v~i~l~~~~~~~~~~~w~~~~ 137 (162)
T cd04020 65 KQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLS-----SNDFLGGVRLGLGTGKSYGQAVDWMDST 137 (162)
T ss_pred ceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCC-----CCceEEEEEEeCCccccCCCccccccCC
Confidence 7999999999999999999998643 2458999999999875 7999999999999998766678888774
No 149
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=4.9e-17 Score=161.47 Aligned_cols=229 Identities=17% Similarity=0.245 Sum_probs=182.8
Q ss_pred cccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEc--c
Q 003882 38 ISSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSK--E 110 (789)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~--~ 110 (789)
.|+..+.+.|+... ..+..+|..|++|..++.++..|||++..+++ .+.+|++..++.||+|+|+..+.- .
T Consensus 79 lg~~~~~~~y~~~~--~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~ 156 (362)
T KOG1013|consen 79 LGALEFELLYDSES--RMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITD 156 (362)
T ss_pred ccchhhhhhhhhhh--hhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceeccccc
Confidence 56678999999988 88999999999999999999999999999986 356899999999999999877763 2
Q ss_pred -CCCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCC----CC-ccceEEEEEEEEeecCC
Q 003882 111 -KIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRD----DR-KVKGEVMLAVWIGTQAD 184 (789)
Q Consensus 111 -~~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~----~~-~~~G~l~l~~~~~~~~d 184 (789)
+.....+++.|+|.+.+..+++.|+..+++..|...+... ...|+.-+.+.+ .. +.+|.|.+++.|.+.
T Consensus 157 ~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~---f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~-- 231 (362)
T KOG1013|consen 157 DDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKS---FNICLEKSLPSERADRDEDEERGAILISLAYSST-- 231 (362)
T ss_pred chhhhhhhheeeccCcccccccCcccchhhhhccChhhcch---hhhhhhccCCcccccccchhhccceeeeeccCcC--
Confidence 2235678899999999999999999999999998775432 224544333311 11 457888877765421
Q ss_pred CcCCccCCCCCcccCCCccccccccccccCccEEEEEEEEEeecCCCCCCCCCCCeEEEEEECC-----eEEeeecccCC
Q 003882 185 EAFPEAWHSDAATVEGEGVFNIRSKVYVSPKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVGN-----QVLKTKLCPTR 259 (789)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~v~~ar~L~~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~~ 259 (789)
...+.|+++.|..|..+|.++.+||||+.++.. .+++|.+.++
T Consensus 232 -------------------------------~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~- 279 (362)
T KOG1013|consen 232 -------------------------------TPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKK- 279 (362)
T ss_pred -------------------------------CCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhc-
Confidence 224889999999999999999999999999863 3677888887
Q ss_pred CCCCccCceeEEEeeC--CCCCeEEEEEEEccCCCCCCceEEEEEecc
Q 003882 260 TTNPLWNEDLIFVAAE--PFEEQLVLTVENKVTPAKDEPLGRLRLSLN 305 (789)
Q Consensus 260 t~nP~wne~f~f~~~~--~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~ 305 (789)
+.+|.||+.|.|.+.. .....+.|.|||++.....+++|-+...+.
T Consensus 280 t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 280 TLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGY 327 (362)
T ss_pred cCCccccccccccCCccchhcceEEEeecccCCCcCccCCCccccccc
Confidence 9999999999998744 345579999999998878899998766554
No 150
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.66 E-value=1.9e-15 Score=140.77 Aligned_cols=120 Identities=18% Similarity=0.208 Sum_probs=93.4
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE-----CCEEEeeccccCCCCCccccEEEEEEeCC---------CceE
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY-----GLKWVRTRTLVDNFNPKWNEQYTWEVYDP---------CTVI 446 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~-----~~~~~~T~~~~~t~~P~wne~~~f~v~~~---------~~~l 446 (789)
|.|.|...++.+|+.. +..+.+||||++++ +.++.||+++++|+||+|||.|.|.|... ...|
T Consensus 4 ~el~i~~~~~~~l~~~---~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L 80 (155)
T cd08690 4 IELTIVRCIGIPLPSG---WNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGL 80 (155)
T ss_pred eEEEEEEeeccccCCC---cCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcE
Confidence 3444444444446665 34578999999986 34689999999999999999999999654 3479
Q ss_pred EEEEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEEe
Q 003882 447 TLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRFT 510 (789)
Q Consensus 447 ~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 510 (789)
.|+|||.+.+. +.|++||++.++|+.+..+.....|++|... .....|+|+++++..
T Consensus 81 ~~~V~d~~~f~----~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~---~k~~Gg~l~v~ir~r 137 (155)
T cd08690 81 KFEVYHKGGFL----RSDKLLGTAQVKLEPLETKCEIHESVDLMDG---RKATGGKLEVKVRLR 137 (155)
T ss_pred EEEEEeCCCcc----cCCCeeEEEEEEcccccccCcceEEEEhhhC---CCCcCCEEEEEEEec
Confidence 99999998763 3799999999999999887777889998732 112369999998764
No 151
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.65 E-value=8.9e-16 Score=137.28 Aligned_cols=107 Identities=23% Similarity=0.354 Sum_probs=93.1
Q ss_pred CccEEEEEEEEEeecCCCCCCCCCCCeEEEEEECCeEEeeecccCCCCCCccCceeEEEeeCCC----CCeEEEEEEEcc
Q 003882 214 PKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTRTTNPLWNEDLIFVAAEPF----EEQLVLTVENKV 289 (789)
Q Consensus 214 ~~~~~L~V~v~~ar~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~~~----~~~l~i~V~d~d 289 (789)
|+.+.|+|+|++|++|. ++.+||||++++++++++|+++++ +.||.|||+|.|.+..+. +..|.|+|||++
T Consensus 1 ~~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~ 75 (111)
T cd04011 1 PQDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKG-TNCPFYNEYFFFNFHESPDELFDKIIKISVYDSR 75 (111)
T ss_pred CCcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEec-cCCCccccEEEEecCCCHHHHhcCeEEEEEEcCc
Confidence 46778999999999998 467999999999999999999886 999999999999975542 468999999999
Q ss_pred CCCCCCceEEEEEeccccccccCCCCCcceeEEcccc
Q 003882 290 TPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKF 326 (789)
Q Consensus 290 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 326 (789)
..+++++||++.++|+++... +++....+|++|.++
T Consensus 76 ~~~~~~~iG~~~i~l~~v~~~-~~~~~~~~w~~L~~~ 111 (111)
T cd04011 76 SLRSDTLIGSFKLDVGTVYDQ-PDHAFLRKWLLLTDP 111 (111)
T ss_pred ccccCCccEEEEECCccccCC-CCCcceEEEEEeeCc
Confidence 888899999999999999753 455678899999763
No 152
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.65 E-value=2e-15 Score=137.80 Aligned_cols=121 Identities=26% Similarity=0.327 Sum_probs=98.6
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCce
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNY-KGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDY 132 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~ 132 (789)
.+|.|+|++|+ |...+..+.+||||+|+++++ .++|+++.+|.||+|||+|.|.+.. .+.|.|+|||++..+++++
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~~~ 78 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKADVL 78 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCCcE
Confidence 46999999999 555555788999999999987 8899999999999999999999864 4789999999999999999
Q ss_pred eEEEEEEccccCCCCCCCCCCCCeeEEcccCCC-CCccceEEEEEE
Q 003882 133 IGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRD-DRKVKGEVMLAV 177 (789)
Q Consensus 133 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~~G~l~l~~ 177 (789)
||++.++|.++.............|++|..... .+...|+|.+.+
T Consensus 79 iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 79 LGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 999999999998764322222225899986552 335689988764
No 153
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.65 E-value=1.7e-15 Score=138.45 Aligned_cols=104 Identities=18% Similarity=0.225 Sum_probs=90.3
Q ss_pred ccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE---CCEEEeeccccCCCCCccccEEEEEEeCC---CceEEEEEEeC
Q 003882 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY---GLKWVRTRTLVDNFNPKWNEQYTWEVYDP---CTVITLGVFDN 453 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~---~~~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~d~ 453 (789)
.+.|.|.|++|+||+.++. ..+.+||||++.+ +.+..+|+++++++||+|||.|.|.+... ...|.|+|||.
T Consensus 13 ~~~L~V~v~~a~~L~~~~~--~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~ 90 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTK--DVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDV 90 (123)
T ss_pred CCEEEEEEEEecCCCCccC--CCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEEC
Confidence 4699999999999998741 3568999999998 34568999999999999999999998752 46899999999
Q ss_pred CCCCCCCCCCCCccEEEEEECcccccCceEeeeEeee
Q 003882 454 CHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490 (789)
Q Consensus 454 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 490 (789)
+..+ .+++||++.++|+++........|++|.
T Consensus 91 ~~~~-----~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 91 DRFS-----RHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred CcCC-----CCcEEEEEEEeccceecCCCceEEEeCC
Confidence 9865 7899999999999999888889999985
No 154
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.65 E-value=9.7e-16 Score=139.91 Aligned_cols=108 Identities=23% Similarity=0.388 Sum_probs=94.5
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEc-c--
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSK-E-- 110 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~-~-- 110 (789)
|..++++.|+... +.|.|+|++|++|+..+..+.+||||++.+.+ ..++|+++.++.||.|||+|.|.. .
T Consensus 2 G~~~~~l~y~~~~--~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~ 79 (123)
T cd04035 2 GTLEFTLLYDPAN--SALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEE 79 (123)
T ss_pred cEEEEEEEEeCCC--CEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHH
Confidence 5678999999987 89999999999999988888999999999853 367999999999999999999963 2
Q ss_pred CCCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCC
Q 003882 111 KIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPP 149 (789)
Q Consensus 111 ~~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~ 149 (789)
+.....|.|+|||++.+ ++++||++.+++++|..+...
T Consensus 80 ~~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~ 117 (123)
T cd04035 80 DIQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPNQTK 117 (123)
T ss_pred HhCCCEEEEEEEEcCCc-CCeeEEEEEEEcccCCCCcce
Confidence 23357899999999988 899999999999999987543
No 155
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.65 E-value=1e-15 Score=138.16 Aligned_cols=101 Identities=18% Similarity=0.333 Sum_probs=86.5
Q ss_pred ccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCC-CCeeccEEEEEccCC-C
Q 003882 41 ERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKS-NPEWKQVFAFSKEKI-Q 113 (789)
Q Consensus 41 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~-nP~wne~f~f~~~~~-~ 113 (789)
..+|+.|.-.. +.|.|+|++|+||++....+.+||||+|++-. .++||+++++|+ ||+|||+|.|++... .
T Consensus 3 l~~sL~Y~p~~--~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~ 80 (135)
T cd08692 3 LQLGTCFQAVN--SRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEH 80 (135)
T ss_pred EEEEeeecCcC--CeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhh
Confidence 45788888877 99999999999999876567789999999863 367999999996 699999999998543 3
Q ss_pred CceEEEEEEeCCCCCCCceeEEEEEEcccc
Q 003882 114 SSVLEVFVRDREIVGRDDYIGKVVFDMNEV 143 (789)
Q Consensus 114 ~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l 143 (789)
.-.|.|+|||++..+++++||.+.+.....
T Consensus 81 ~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 81 GIQFLIKLYSRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred eeEEEEEEEeCCCCcCCceEEEEEECCccC
Confidence 467889999999999999999999998764
No 156
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.65 E-value=2.1e-15 Score=136.54 Aligned_cols=113 Identities=31% Similarity=0.538 Sum_probs=91.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEccCC--CCceEEEEEEeCCCCCCCce
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNY-KGKTRHFEKKSNPEWKQVFAFSKEKI--QSSVLEVFVRDREIVGRDDY 132 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~~~~~--~~~~l~v~V~d~~~~~~d~~ 132 (789)
|.|+|++|+||+.. +.+||||+++++++ .++|+++.+ .||+|||+|.|.+... ....|.|.+||.+..+++.+
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV 77 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence 78999999999976 78999999999985 479999999 9999999999998653 24678889999887766777
Q ss_pred eEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEE
Q 003882 133 IGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWI 179 (789)
Q Consensus 133 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 179 (789)
+|.+.|. .+..+...+ .||+|.+..+.....|+|++.++|
T Consensus 78 ~g~v~l~--~~~~~~~~~-----~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 78 IGKVALS--KLDLGQGKD-----EWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEEec--CcCCCCcce-----eEEECccCCCCCCcCceEEEEEEC
Confidence 7776554 444444434 999999877655678999998865
No 157
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.65 E-value=1.1e-15 Score=138.35 Aligned_cols=95 Identities=24% Similarity=0.376 Sum_probs=83.5
Q ss_pred CCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeC--CCceEEEEEEeCC
Q 003882 377 KQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYD--PCTVITLGVFDNC 454 (789)
Q Consensus 377 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~--~~~~l~v~v~d~~ 454 (789)
...+|.|+|+|++|+||+. +..+.+||||+|+++++.+||++++++.||+|||.|.|.... ....|.|+|||++
T Consensus 24 ~~~~~~L~V~V~~A~~L~~----d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d 99 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG----DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRD 99 (127)
T ss_pred cCCcEEEEEEEEECCCCCc----CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCC
Confidence 4567999999999999973 345789999999999999999999999999999999997543 3779999999999
Q ss_pred CCCCCCCCCCCccEEEEEECcccccC
Q 003882 455 HLGGSGTKPDSRIGKVRIRLSTLEAD 480 (789)
Q Consensus 455 ~~~~~~~~~d~~lG~~~i~l~~l~~~ 480 (789)
.++ .|++||++.++|.....+
T Consensus 100 ~~s-----~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 100 NGW-----DDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CCC-----CCCeeEEEEEEecCCcee
Confidence 986 899999999999987654
No 158
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.65 E-value=9.9e-16 Score=142.33 Aligned_cols=92 Identities=32% Similarity=0.538 Sum_probs=84.7
Q ss_pred ccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCC
Q 003882 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGS 459 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~ 459 (789)
+|.|+|+|++|+||+..+ . +.+||||+++++++.++|++++++.||+|||.|.|.+.++...|.|+|||++.++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d---~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~-- 74 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRD---F-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFS-- 74 (145)
T ss_pred CeEEEEEEEeeECCCCCC---C-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCC--
Confidence 489999999999998764 3 6899999999999999999999999999999999999998889999999999886
Q ss_pred CCCCCCccEEEEEECcccccC
Q 003882 460 GTKPDSRIGKVRIRLSTLEAD 480 (789)
Q Consensus 460 ~~~~d~~lG~~~i~l~~l~~~ 480 (789)
.|++||++.+++.++...
T Consensus 75 ---~dd~iG~a~i~l~~l~~~ 92 (145)
T cd04038 75 ---KDDSMGEAEIDLEPLVEA 92 (145)
T ss_pred ---CCCEEEEEEEEHHHhhhh
Confidence 889999999999998754
No 159
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.64 E-value=9.3e-16 Score=140.50 Aligned_cols=113 Identities=27% Similarity=0.309 Sum_probs=95.3
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC-EEEeecccc-CCCCCccccEEEEEEeCC-----CceEEEEEEeCC
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL-KWVRTRTLV-DNFNPKWNEQYTWEVYDP-----CTVITLGVFDNC 454 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-~~~~T~~~~-~t~~P~wne~~~f~v~~~-----~~~l~v~v~d~~ 454 (789)
.|+|+|++|++|+..+ ..+.+||||+|++++ +..+|+++. ++.||.|||.|.|.+.++ ...|.|+|||++
T Consensus 1 ~L~V~V~sA~~L~~~~---~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~ 77 (125)
T cd04051 1 TLEITIISAEDLKNVN---LFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCER 77 (125)
T ss_pred CEEEEEEEcccCCCCC---cccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECC
Confidence 3789999999999774 357899999999988 889999986 589999999999999876 579999999998
Q ss_pred CCCCCCCCCCCccEEEEEECcccccCce-----EeeeEeeeecCCCCCccceEEEE
Q 003882 455 HLGGSGTKPDSRIGKVRIRLSTLEADRI-----YTHSYPLLVLNPSGVKKMGELQL 505 (789)
Q Consensus 455 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~g~~~~G~i~l 505 (789)
.++ .|++||.+.|++.++..+.. ...||+|...+ | +..|.|++
T Consensus 78 ~~~-----~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~--g-~~~G~~~~ 125 (125)
T cd04051 78 PSL-----GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS--G-KPQGVLNF 125 (125)
T ss_pred CCC-----CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC--C-CcCeEEeC
Confidence 865 78999999999999987653 47899998543 3 34688864
No 160
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.64 E-value=1.5e-15 Score=138.93 Aligned_cols=103 Identities=27% Similarity=0.429 Sum_probs=92.3
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccC-CCCCccccEEEEEEeCC----CceEEEEEEeCCC
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVD-NFNPKWNEQYTWEVYDP----CTVITLGVFDNCH 455 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~-t~~P~wne~~~f~v~~~----~~~l~v~v~d~~~ 455 (789)
|.|.|+|++|+||+.++. .+.+||||+|+++++..+|+++++ +.||.|||.|.|.+..+ ...|.|+|||.+.
T Consensus 1 g~L~V~V~~A~~L~~~~~---~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDF---LGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCCCC---CCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 689999999999998743 478999999999999999999885 89999999999999876 5789999999998
Q ss_pred CCCCCCCCCCccEEEEEECcccccCceEeeeEeeee
Q 003882 456 LGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLV 491 (789)
Q Consensus 456 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 491 (789)
++ .+++||++.++++++..++....|++|..
T Consensus 78 ~~-----~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 78 FS-----DDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred CC-----CCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 75 78999999999999998877899999863
No 161
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.64 E-value=4.6e-15 Score=136.73 Aligned_cols=117 Identities=20% Similarity=0.282 Sum_probs=98.5
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCee-eeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCC-CC---
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYK-GKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREI-VG--- 128 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~-~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~-~~--- 128 (789)
..|.|.|++|++|+.++ +|||+|.++++. .||+++.++.||.|+|.|+|..... ...|.|.||+.+. .+
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~~~~~ 84 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKKKKKD 84 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCcccccc
Confidence 57999999999999864 899999999987 5999999999999999999986554 3789999976543 22
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCC--------ccceEEEEEEEEee
Q 003882 129 RDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDR--------KVKGEVMLAVWIGT 181 (789)
Q Consensus 129 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~--------~~~G~l~l~~~~~~ 181 (789)
++++||.+.|++.++..+...+ .||+|.+..+.. ...+.|+++++|..
T Consensus 85 ~~~~IG~V~Ip~~~l~~~~~ve-----~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~ 140 (146)
T cd04013 85 KSQLIGTVNIPVTDVSSRQFVE-----KWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS 140 (146)
T ss_pred CCcEEEEEEEEHHHhcCCCccc-----EEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence 5789999999999999876666 999999887653 44589999998864
No 162
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.64 E-value=1.2e-15 Score=139.10 Aligned_cols=92 Identities=29% Similarity=0.521 Sum_probs=83.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCee--eeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCce
Q 003882 55 YLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYK--GKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDY 132 (789)
Q Consensus 55 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~--~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~ 132 (789)
.|+|+|++|++|+..+..|.+||||+++++++. .+|+++++|.||+|||+|.|.+..+....|.|+|||++.+++|++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 378999999999999988999999999999864 578889999999999999999876667899999999999999999
Q ss_pred eEEEEEEccccCCC
Q 003882 133 IGKVVFDMNEVPTR 146 (789)
Q Consensus 133 lG~~~i~l~~l~~~ 146 (789)
||++.+++.+....
T Consensus 81 iG~~~i~l~~~~~~ 94 (124)
T cd04037 81 IGETVIDLEDRFFS 94 (124)
T ss_pred eEEEEEeecccccc
Confidence 99999999987753
No 163
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.64 E-value=1.5e-16 Score=162.31 Aligned_cols=115 Identities=28% Similarity=0.479 Sum_probs=100.6
Q ss_pred cceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccC-CCCc
Q 003882 42 RATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEK-IQSS 115 (789)
Q Consensus 42 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~-~~~~ 115 (789)
.+.++..... ..|.|+|.+|+||.++|.+|.+||||++.+-+ .+++|++++.|+||+|||+|.|.+.. ..+.
T Consensus 170 rl~l~~~~~~--~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~Dkdr 247 (683)
T KOG0696|consen 170 RLYLEAHIKR--DVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDR 247 (683)
T ss_pred eEEEEEEecC--ceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccc
Confidence 4555555555 78999999999999999999999999999976 36799999999999999999999843 3478
Q ss_pred eEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCC
Q 003882 116 VLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRR 164 (789)
Q Consensus 116 ~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 164 (789)
.|.|+|||+|+-+++||+|..++.+++|.... .+ .||+|..+.
T Consensus 248 RlsiEvWDWDrTsRNDFMGslSFgisEl~K~p-~~-----GWyKlLsqe 290 (683)
T KOG0696|consen 248 RLSIEVWDWDRTSRNDFMGSLSFGISELQKAP-VD-----GWYKLLSQE 290 (683)
T ss_pred eeEEEEecccccccccccceecccHHHHhhcc-hh-----hHHHHhhhh
Confidence 99999999999999999999999999999874 34 899998764
No 164
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.63 E-value=1.9e-15 Score=136.71 Aligned_cols=103 Identities=30% Similarity=0.371 Sum_probs=91.5
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC-EEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCC
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL-KWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGS 459 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~ 459 (789)
|.|+|.|++|+||+..+ ..+.+||||+|.+++ ...+|++++++.||.|||.|.|.+..+...|.|+|||++..+
T Consensus 1 g~L~V~Vi~a~~L~~~d---~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~-- 75 (120)
T cd04045 1 GVLRLHIRKANDLKNLE---GVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVG-- 75 (120)
T ss_pred CeEEEEEEeeECCCCcc---CCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCC--
Confidence 68999999999999874 357999999999977 569999999999999999999999887789999999999875
Q ss_pred CCCCCCccEEEEEECcccccCceEeeeEeeeec
Q 003882 460 GTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVL 492 (789)
Q Consensus 460 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 492 (789)
.|++||++.++++++..+ ..+.||.|.+.
T Consensus 76 ---~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~ 104 (120)
T cd04045 76 ---KDRSLGSVEINVSDLIKK-NEDGKYVEYDD 104 (120)
T ss_pred ---CCCeeeEEEEeHHHhhCC-CCCceEEecCC
Confidence 789999999999999876 55888888744
No 165
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.62 E-value=8.9e-15 Score=134.73 Aligned_cols=117 Identities=22% Similarity=0.408 Sum_probs=99.9
Q ss_pred eEEEEEEEEeeCCCCCC--CCCCCCcEEEEEEC------CeeeeeccccCCC-CCeeccEEEEEccCCCCceEEEEEEeC
Q 003882 54 FYLYVRVEKARDLPTNP--VSGSCDPYVEVKLG------NYKGKTRHFEKKS-NPEWKQVFAFSKEKIQSSVLEVFVRDR 124 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~--~~g~~dpyv~v~~~------~~~~~T~~~~~t~-nP~wne~f~f~~~~~~~~~l~v~V~d~ 124 (789)
..|+|+|++|+||+..+ ..+.+||||++++. ..+++|+++.++. ||+|||+|.|.+.......|.|+|||.
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 46999999999999887 57789999999994 3567999988876 999999999998766567899999999
Q ss_pred CCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEE
Q 003882 125 EIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWI 179 (789)
Q Consensus 125 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 179 (789)
+.. ++++||++.+++.++..+. .|++|.+..+.....|.|.+.+++
T Consensus 82 ~~~-~~~~iG~~~~~l~~l~~g~--------~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSG-DDDFLGQACLPLDSLRQGY--------RHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CCC-CCcEeEEEEEEhHHhcCce--------EEEEecCCCCCCCcceeEEEEEEE
Confidence 988 8999999999999996532 789999887765567899888765
No 166
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.62 E-value=4.2e-15 Score=136.58 Aligned_cols=92 Identities=27% Similarity=0.353 Sum_probs=77.9
Q ss_pred CccEEEEEEEEEeecCCCCCC--CCCCCeEEEEEECC-----eEEeeecccCCCCCCccCceeEEEeeCC--CCCeEEEE
Q 003882 214 PKLWYLRVNVIEAQDVEPLDK--SQLPQAFVEAQVGN-----QVLKTKLCPTRTTNPLWNEDLIFVAAEP--FEEQLVLT 284 (789)
Q Consensus 214 ~~~~~L~V~v~~ar~L~~~~~--~~~~dpyv~v~l~~-----~~~kT~~~~~~t~nP~wne~f~f~~~~~--~~~~l~i~ 284 (789)
|..+.|.|.|++|+||...+. .+.+||||++++.. .+.||+++++ +.||+|||.|.|.+... .+..|.|+
T Consensus 12 ~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~-t~nPvfNE~f~F~v~~~~L~~~~L~~~ 90 (138)
T cd08407 12 PAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKH-KINPVWNEMIMFELPSELLAASSVELE 90 (138)
T ss_pred CCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeC-CCCCccccEEEEECCHHHhCccEEEEE
Confidence 334569999999999999883 24589999999974 3568888886 99999999999998643 45679999
Q ss_pred EEEccCCCCCCceEEEEEeccc
Q 003882 285 VENKVTPAKDEPLGRLRLSLNV 306 (789)
Q Consensus 285 V~d~d~~~~d~~iG~~~i~l~~ 306 (789)
|+|++..+++++||++.+++..
T Consensus 91 V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 91 VLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred EEeCCCCcCcceeceEEecCcC
Confidence 9999999999999999999864
No 167
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.61 E-value=3.1e-15 Score=139.71 Aligned_cols=100 Identities=30% Similarity=0.472 Sum_probs=86.6
Q ss_pred CCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC-----------------------------EEEeeccccCCC
Q 003882 377 KQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL-----------------------------KWVRTRTLVDNF 427 (789)
Q Consensus 377 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----------------------------~~~~T~~~~~t~ 427 (789)
.++.+.|.|+|++|+||+++| ..|.+||||+|.++. ..++|+++++++
T Consensus 24 ~~~~~~L~V~vi~a~~L~~~d---~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tl 100 (153)
T cd08676 24 EPPIFVLKVTVIEAKGLLAKD---VNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTL 100 (153)
T ss_pred CCCeEEEEEEEEeccCCcccC---CCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCC
Confidence 577899999999999999884 457899999999853 237899999999
Q ss_pred CCccccEEEEEEeCC-CceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEee
Q 003882 428 NPKWNEQYTWEVYDP-CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPL 489 (789)
Q Consensus 428 ~P~wne~~~f~v~~~-~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 489 (789)
||.|||.|.|.+.+. ...|.|+|||++ +++||++.++++++.. ...+.||+|
T Consensus 101 nP~WnE~F~f~v~~~~~~~L~i~V~D~d---------d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 101 NPVWNETFRFEVEDVSNDQLHLDIWDHD---------DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred CCccccEEEEEeccCCCCEEEEEEEecC---------CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 999999999999874 579999999964 5799999999999984 446999986
No 168
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.61 E-value=7.4e-15 Score=132.93 Aligned_cols=112 Identities=28% Similarity=0.460 Sum_probs=88.3
Q ss_pred EEEEEEEccCCCCCccCCCCCCcCcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeC---CCceEEEEEEeCCCCCC
Q 003882 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLK-WVRTRTLVDNFNPKWNEQYTWEVYD---PCTVITLGVFDNCHLGG 458 (789)
Q Consensus 383 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v~v~d~~~~~~ 458 (789)
|+|+|++|+||+.. +.+||||+++++++ .++|+++++ .||.|||+|.|.+.. ....|.|.++|.+..+
T Consensus 2 L~v~vi~a~~l~~~------~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~- 73 (117)
T cd08383 2 LRLRILEAKNLPSK------GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKD- 73 (117)
T ss_pred eEEEEEEecCCCcC------CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCC-
Confidence 78999999999853 68999999999885 589999999 999999999999986 3457888888877543
Q ss_pred CCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEE
Q 003882 459 SGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRF 509 (789)
Q Consensus 459 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 509 (789)
.+..+|++.| ..+..+...+.||+|...+. +.+..|+|+|++.|
T Consensus 74 ----~~~~~g~v~l--~~~~~~~~~~~w~~L~~~~~-~~~~~G~l~l~~~~ 117 (117)
T cd08383 74 ----RDIVIGKVAL--SKLDLGQGKDEWFPLTPVDP-DSEVQGSVRLRARY 117 (117)
T ss_pred ----CeeEEEEEEe--cCcCCCCcceeEEECccCCC-CCCcCceEEEEEEC
Confidence 5566666554 55555777799999976543 23357999999875
No 169
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.61 E-value=6.6e-15 Score=136.10 Aligned_cols=91 Identities=22% Similarity=0.358 Sum_probs=80.1
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEEC-------CEEEeeccccCCCCCccccEEEEEEeCC-----CceEEE
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG-------LKWVRTRTLVDNFNPKWNEQYTWEVYDP-----CTVITL 448 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~-------~~~~~T~~~~~t~~P~wne~~~f~v~~~-----~~~l~v 448 (789)
+.|.|+|++|++|+.++ ..+.+||||+|.+. ....||+++++|+||+|||.|.|++... ...|.|
T Consensus 16 ~~L~V~Vi~A~~L~~~~---~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~ 92 (133)
T cd04009 16 QSLRVEILNARNLLPLD---SNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLF 92 (133)
T ss_pred CEEEEEEEEeeCCCCcC---CCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEE
Confidence 58999999999999874 35789999999984 3579999999999999999999998752 458999
Q ss_pred EEEeCCCCCCCCCCCCCccEEEEEECccccc
Q 003882 449 GVFDNCHLGGSGTKPDSRIGKVRIRLSTLEA 479 (789)
Q Consensus 449 ~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~ 479 (789)
+|||++.++ ++++||++.++|+++..
T Consensus 93 ~V~d~d~~~-----~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 93 TVKDYDLLG-----SNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEEecCCCC-----CCcEeEEEEEeHHHCCc
Confidence 999999875 78999999999999874
No 170
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.60 E-value=8.2e-15 Score=132.15 Aligned_cols=111 Identities=29% Similarity=0.412 Sum_probs=94.5
Q ss_pred EEEEEEEccCCCCCccCCCCCCcCcEEEEEECC-EEEeeccccCCCCCccccEEEEEEeC-CCceEEEEEEeCCCCCCCC
Q 003882 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL-KWVRTRTLVDNFNPKWNEQYTWEVYD-PCTVITLGVFDNCHLGGSG 460 (789)
Q Consensus 383 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-~~~~T~~~~~t~~P~wne~~~f~v~~-~~~~l~v~v~d~~~~~~~~ 460 (789)
|+|+|++|+||+..+ ..+.+||||+|.+++ +.++|+++.++.||.|||.|.|.+.+ ....+.|+|||++..+
T Consensus 1 l~v~vi~a~~L~~~~---~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~--- 74 (115)
T cd04040 1 LTVDVISAENLPSAD---RNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGG--- 74 (115)
T ss_pred CEEEEEeeeCCCCCC---CCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCC---
Confidence 578999999999874 357899999999965 55899999999999999999999986 4679999999999875
Q ss_pred CCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEE
Q 003882 461 TKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQ 504 (789)
Q Consensus 461 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~ 504 (789)
++++||++.+++.++..+.....|++|... |..+.|.+.
T Consensus 75 --~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~---g~~~~~~~~ 113 (115)
T cd04040 75 --KDDLLGSAYIDLSDLEPEETTELTLPLDGQ---GGGKLGAVF 113 (115)
T ss_pred --CCCceEEEEEEHHHcCCCCcEEEEEECcCC---CCccCceEE
Confidence 789999999999999988888999999643 333456664
No 171
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.60 E-value=5e-15 Score=134.47 Aligned_cols=100 Identities=19% Similarity=0.254 Sum_probs=86.4
Q ss_pred EEEEeeCCCCCCCCCCCCcEEEEEECCe-------eeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCC----C
Q 003882 59 RVEKARDLPTNPVSGSCDPYVEVKLGNY-------KGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREI----V 127 (789)
Q Consensus 59 ~v~~a~~L~~~~~~g~~dpyv~v~~~~~-------~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~----~ 127 (789)
-.++|++|+..+..|.+||||+|++.+. .++|+++++|.||+|||+|.|.+.....+.|.|+|||++. .
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence 3488999999998899999999999875 3799999999999999999998654446789999999997 7
Q ss_pred CCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccC
Q 003882 128 GRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDR 163 (789)
Q Consensus 128 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 163 (789)
+++++||++.+++.+|....... .|++|.+.
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~~~~-----~~~~l~~~ 115 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSPGQK-----LTLPLKGG 115 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCCCcE-----EEEEccCC
Confidence 89999999999999999765544 78888443
No 172
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.60 E-value=7.9e-15 Score=135.50 Aligned_cols=103 Identities=25% Similarity=0.369 Sum_probs=89.4
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeCC--CceEEEEEEeC
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL-----KWVRTRTLVDNFNPKWNEQYTWEVYDP--CTVITLGVFDN 453 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~--~~~l~v~v~d~ 453 (789)
+.|+|+|++|++|+..+ ..+.+||||+|.+.+ ...+|++++++.||.|||.|.|.+... ...|.|+|||+
T Consensus 13 ~~l~v~i~~a~nL~~~~---~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~ 89 (131)
T cd04026 13 NKLTVEVREAKNLIPMD---PNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDW 89 (131)
T ss_pred CEEEEEEEEeeCCCCcC---CCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEEC
Confidence 59999999999999764 347899999999953 679999999999999999999998753 56899999999
Q ss_pred CCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeec
Q 003882 454 CHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVL 492 (789)
Q Consensus 454 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 492 (789)
+..+ .+++||++.++++++... ....||+|.+.
T Consensus 90 ~~~~-----~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~ 122 (131)
T cd04026 90 DRTT-----RNDFMGSLSFGVSELIKM-PVDGWYKLLNQ 122 (131)
T ss_pred CCCC-----CcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence 8765 789999999999999855 56899999754
No 173
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.60 E-value=7.4e-15 Score=135.16 Aligned_cols=103 Identities=21% Similarity=0.233 Sum_probs=84.3
Q ss_pred EEEEEEEEEeecCCCCCCCCCCCeEEEEEECC-----eEEeeecccCCCCCCccCceeEEEeeC--CCCCeEEEEEEEcc
Q 003882 217 WYLRVNVIEAQDVEPLDKSQLPQAFVEAQVGN-----QVLKTKLCPTRTTNPLWNEDLIFVAAE--PFEEQLVLTVENKV 289 (789)
Q Consensus 217 ~~L~V~v~~ar~L~~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~~t~nP~wne~f~f~~~~--~~~~~l~i~V~d~d 289 (789)
..|.|+|++|++|+..+..+.+||||++++.. .+.||+++++ +.||+|||+|.|.+.. ..+..|.|+|+|++
T Consensus 15 ~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~-t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d 93 (136)
T cd08406 15 ERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRD-DTNPIFNEAMIFSVPAIVLQDLSLRVTVAEST 93 (136)
T ss_pred CEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccC-CCCCeeceeEEEECCHHHhCCcEEEEEEEeCC
Confidence 46999999999999998889999999999953 2567888876 9999999999999854 35678999999999
Q ss_pred CCCCCCceEEEEEeccccccccCCCCCcceeEEcccc
Q 003882 290 TPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKF 326 (789)
Q Consensus 290 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 326 (789)
..+++++||++.++.... +....+|..+...
T Consensus 94 ~~~~~~~iG~v~lg~~~~------g~~~~hW~~ml~~ 124 (136)
T cd08406 94 EDGKTPNVGHVIIGPAAS------GMGLSHWNQMLAS 124 (136)
T ss_pred CCCCCCeeEEEEECCCCC------ChhHHHHHHHHHC
Confidence 999999999999976532 1234567666543
No 174
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.60 E-value=3.8e-15 Score=138.41 Aligned_cols=101 Identities=20% Similarity=0.219 Sum_probs=86.0
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEEC--CE---EEeeccccCCCCCccccEEEEEEeC---CCceEEEEEEe
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG--LK---WVRTRTLVDNFNPKWNEQYTWEVYD---PCTVITLGVFD 452 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~--~~---~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v~v~d 452 (789)
+.|.|+|++|+||+.++ ..|.+||||++.+. ++ ..||+++++++||.|||.|.|.+.. ....|.|+|||
T Consensus 15 ~~L~V~vi~a~~L~~~d---~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d 91 (136)
T cd08404 15 NRLTVVVLKARHLPKMD---VSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLD 91 (136)
T ss_pred CeEEEEEEEeeCCCccc---cCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEE
Confidence 69999999999999874 35789999999883 32 4789999999999999999999874 35679999999
Q ss_pred CCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeee
Q 003882 453 NCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLV 491 (789)
Q Consensus 453 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 491 (789)
++.++ ++++||++.+++.. .+....+|++|..
T Consensus 92 ~d~~~-----~~~~iG~~~~~~~~--~~~~~~~w~~l~~ 123 (136)
T cd08404 92 SDRVT-----KNEVIGRLVLGPKA--SGSGGHHWKEVCN 123 (136)
T ss_pred CCCCC-----CCccEEEEEECCcC--CCchHHHHHHHHh
Confidence 99876 88999999999999 3556688998864
No 175
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.59 E-value=6.1e-15 Score=136.52 Aligned_cols=102 Identities=22% Similarity=0.304 Sum_probs=90.1
Q ss_pred EEEEEEEccCCCCCccCCCCCCcCcEEEEEEC----CEEEeeccccCCCCCccccEEEEEEeCC----------------
Q 003882 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG----LKWVRTRTLVDNFNPKWNEQYTWEVYDP---------------- 442 (789)
Q Consensus 383 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~----~~~~~T~~~~~t~~P~wne~~~f~v~~~---------------- 442 (789)
|+|.|++|+||+.+ . .+.+||||+|+++ ++..+|++++++.||.|||.|.|.+...
T Consensus 1 L~V~Vi~A~~L~~~-~---~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~ 76 (137)
T cd08675 1 LSVRVLECRDLALK-S---NGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLE 76 (137)
T ss_pred CEEEEEEccCCCcc-c---CCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEcccccccccccccccccccc
Confidence 57899999999876 3 4689999999998 7889999999999999999999998764
Q ss_pred CceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeecC
Q 003882 443 CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLN 493 (789)
Q Consensus 443 ~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 493 (789)
...|.|+|||++..+ .+++||++.+++.++........||+|....
T Consensus 77 ~~~l~i~V~d~~~~~-----~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 77 KSELRVELWHASMVS-----GDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred ccEEEEEEEcCCcCc-----CCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 458999999999865 7899999999999998877789999997654
No 176
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.59 E-value=1.3e-14 Score=135.00 Aligned_cols=105 Identities=27% Similarity=0.303 Sum_probs=88.0
Q ss_pred CCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEEC--C---EEEeeccccCCCCCccccEEEEEEeCC---CceEEE
Q 003882 377 KQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG--L---KWVRTRTLVDNFNPKWNEQYTWEVYDP---CTVITL 448 (789)
Q Consensus 377 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~--~---~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v 448 (789)
.+..|.|.|.|++|+||+.++ ..|.+||||+|.++ + ...+|+++++++||.|||.|.|.+... ...|.|
T Consensus 11 ~~~~~~l~V~Vi~a~~L~~~d---~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~ 87 (136)
T cd08402 11 VPTAGKLTVVILEAKNLKKMD---VGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIV 87 (136)
T ss_pred cCCCCeEEEEEEEeeCCCccc---CCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEE
Confidence 455689999999999999874 45789999999984 2 357899999999999999999998743 348999
Q ss_pred EEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeee
Q 003882 449 GVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLV 491 (789)
Q Consensus 449 ~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 491 (789)
+|||++.++ .|++||++.|++... +....+|+++..
T Consensus 88 ~v~d~~~~~-----~~~~iG~~~i~~~~~--~~~~~~W~~~~~ 123 (136)
T cd08402 88 TVLDYDRIG-----KNDPIGKVVLGCNAT--GAELRHWSDMLA 123 (136)
T ss_pred EEEeCCCCC-----CCceeEEEEECCccC--ChHHHHHHHHHh
Confidence 999999876 889999999999874 556688888864
No 177
>PLN03008 Phospholipase D delta
Probab=99.59 E-value=1.1e-14 Score=164.40 Aligned_cols=133 Identities=20% Similarity=0.359 Sum_probs=112.7
Q ss_pred cceeeecccCceeEEEEEEEEeeCCCCCCC------------------------------------------CCCCCcEE
Q 003882 42 RATSTYDLVEQMFYLYVRVEKARDLPTNPV------------------------------------------SGSCDPYV 79 (789)
Q Consensus 42 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~------------------------------------------~g~~dpyv 79 (789)
+.+..--+.+ |.|.|+|.+|++|+++|. .+++||||
T Consensus 4 ~~~~~~~llh--g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV 81 (868)
T PLN03008 4 KVSEDVMLLH--GDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYV 81 (868)
T ss_pred ccccceEEee--cccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceE
Confidence 4555666777 999999999999985221 24689999
Q ss_pred EEEECCe-eeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeE
Q 003882 80 EVKLGNY-KGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWY 158 (789)
Q Consensus 80 ~v~~~~~-~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~ 158 (789)
+|.++++ ..||++++++.||+|||+|.|.+.++. ..|.|+|||+|.++ +++||++.|+|.+|..+...+ .|+
T Consensus 82 ~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~-s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd-----~Wl 154 (868)
T PLN03008 82 TVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPF-AYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERIS-----GWF 154 (868)
T ss_pred EEEECCcceeeEEeCCCCCCCCcceeEEEEecCCC-ceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceE-----EEE
Confidence 9999886 469999999999999999999998864 79999999999996 689999999999999987766 999
Q ss_pred EcccCCCCC-ccceEEEEEEEEeecC
Q 003882 159 RLEDRRDDR-KVKGEVMLAVWIGTQA 183 (789)
Q Consensus 159 ~L~~~~~~~-~~~G~l~l~~~~~~~~ 183 (789)
+|.+..++. +..|.|++++.|.+..
T Consensus 155 ~Ll~~~~kp~k~~~kl~v~lqf~pv~ 180 (868)
T PLN03008 155 PVLGASGKPPKAETAIFIDMKFTPFD 180 (868)
T ss_pred EccccCCCCCCCCcEEEEEEEEEEcc
Confidence 999887653 4568999999998654
No 178
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.58 E-value=1.8e-14 Score=133.38 Aligned_cols=106 Identities=21% Similarity=0.312 Sum_probs=84.5
Q ss_pred CCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE--CC---EEEeeccccCCCCCccccEEEEEEeCC---CceEEE
Q 003882 377 KQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY--GL---KWVRTRTLVDNFNPKWNEQYTWEVYDP---CTVITL 448 (789)
Q Consensus 377 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~--~~---~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v 448 (789)
.+..|.|.|+|++|++|+.++. .|.+||||+|.+ ++ ++.+|+++++|.||.|||.|.|.+... ...|.|
T Consensus 10 ~~~~~~L~V~vi~a~~L~~~d~---~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~ 86 (135)
T cd08410 10 LPSAGRLNVDIIRAKQLLQTDM---SQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVF 86 (135)
T ss_pred CCCCCeEEEEEEEecCCCcccC---CCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEE
Confidence 3445899999999999998743 478999999997 32 358999999999999999999998642 347999
Q ss_pred EEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeee
Q 003882 449 GVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLV 491 (789)
Q Consensus 449 ~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 491 (789)
+|||++..+ ++++||++.|....... ....+|+.|..
T Consensus 87 ~V~d~d~~~-----~~~~iG~~~l~~~~~~~-~~~~~W~~l~~ 123 (135)
T cd08410 87 TVYGHNVKS-----SNDFIGRIVIGQYSSGP-SETNHWRRMLN 123 (135)
T ss_pred EEEeCCCCC-----CCcEEEEEEEcCccCCc-hHHHHHHHHHh
Confidence 999999875 89999999977644432 23477887764
No 179
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.58 E-value=2.6e-14 Score=130.45 Aligned_cols=116 Identities=24% Similarity=0.312 Sum_probs=93.3
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCC
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLK-WVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGSG 460 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~ 460 (789)
.|.|+|++|+ |... +..+.+||||+|+++++ ..+|++++++.||.|||.|.|.+. +...|.|+|||++..+
T Consensus 3 ~L~V~i~~a~-l~~~---~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~--- 74 (125)
T cd04021 3 QLQITVESAK-LKSN---SKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLK--- 74 (125)
T ss_pred eEEEEEEeeE-CCCC---CcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCC---
Confidence 6899999998 5443 23568999999999887 899999999999999999999986 4679999999999875
Q ss_pred CCCCCccEEEEEECcccccCce-----EeeeEeeeecCCCCCccceEEEEEE
Q 003882 461 TKPDSRIGKVRIRLSTLEADRI-----YTHSYPLLVLNPSGVKKMGELQLAV 507 (789)
Q Consensus 461 ~~~d~~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~g~~~~G~i~l~~ 507 (789)
.+++||++.++|+++..+.. ...|++|........+..|+|++++
T Consensus 75 --~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 75 --ADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred --CCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 78999999999999885321 3468888744321224569998875
No 180
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.58 E-value=1.2e-14 Score=129.77 Aligned_cols=101 Identities=24% Similarity=0.407 Sum_probs=86.2
Q ss_pred CCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCC
Q 003882 71 VSGSCDPYVEVKLGNY-KGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPP 149 (789)
Q Consensus 71 ~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~ 149 (789)
.+|.+||||+|+++++ .++|+++.++.||+|||+|.|.+.+.....|.|+|||++.+ ++++||++.++|+++.....
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~- 86 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATS- 86 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhh-
Confidence 4688999999999985 57999999999999999999999877678899999999998 89999999999999965422
Q ss_pred CCCCCCeeEEcccCCCCCccceEEEEEEEEee
Q 003882 150 DSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGT 181 (789)
Q Consensus 150 ~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 181 (789)
....||+|++. ..|+|++++.|.+
T Consensus 87 ---~~~~w~~L~~~-----~~G~i~~~~~~~p 110 (111)
T cd04052 87 ---VGQQWFPLSGN-----GQGRIRISALWKP 110 (111)
T ss_pred ---ccceeEECCCC-----CCCEEEEEEEEec
Confidence 12389999862 3699999988763
No 181
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.57 E-value=1.4e-14 Score=129.32 Aligned_cols=99 Identities=23% Similarity=0.290 Sum_probs=84.9
Q ss_pred CCCCcCcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccc
Q 003882 401 GRGTTDAYCVAKYGLK-WVRTRTLVDNFNPKWNEQYTWEVYDP-CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLE 478 (789)
Q Consensus 401 ~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~ 478 (789)
..|.+||||+|.++++ ..+|++++++.||.|||.|.|.+.++ ...|.|.|+|++.+ +|++||++.++|+++.
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~------~d~~iG~~~v~L~~l~ 82 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR------HDPVLGSVSISLNDLI 82 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC------CCCeEEEEEecHHHHH
Confidence 4678999999999875 58999999999999999999999875 57899999998875 6899999999999985
Q ss_pred c-CceEeeeEeeeecCCCCCccceEEEEEEEEee
Q 003882 479 A-DRIYTHSYPLLVLNPSGVKKMGELQLAVRFTC 511 (789)
Q Consensus 479 ~-~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 511 (789)
. +.....||+|.. .+.|+|++++.|.|
T Consensus 83 ~~~~~~~~w~~L~~------~~~G~i~~~~~~~p 110 (111)
T cd04052 83 DATSVGQQWFPLSG------NGQGRIRISALWKP 110 (111)
T ss_pred hhhhccceeEECCC------CCCCEEEEEEEEec
Confidence 4 345689999963 24699999998876
No 182
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.57 E-value=2.9e-14 Score=128.84 Aligned_cols=93 Identities=17% Similarity=0.258 Sum_probs=76.7
Q ss_pred CccEEEEEEEEEeecCCCCCCCCCCCeEEEEEECC-----eEEeeecccCCCC-CCccCceeEEEeeCCC-CCeEEEEEE
Q 003882 214 PKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVGN-----QVLKTKLCPTRTT-NPLWNEDLIFVAAEPF-EEQLVLTVE 286 (789)
Q Consensus 214 ~~~~~L~V~v~~ar~L~~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~~t~-nP~wne~f~f~~~~~~-~~~l~i~V~ 286 (789)
|..++|.|.|++|+||+.++..+.+||||+|.+.. .++||+++++ |. +|+|||+|.|++.... +-.+.|+|+
T Consensus 11 p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~-t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~ 89 (135)
T cd08692 11 AVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKS-SNGQVKWGETMIFPVTQQEHGIQFLIKLY 89 (135)
T ss_pred CcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEEC-CCCCceecceEEEeCCchhheeEEEEEEE
Confidence 45567999999999999886667789999998852 4688888876 74 6999999999997542 336788889
Q ss_pred EccCCCCCCceEEEEEecccc
Q 003882 287 NKVTPAKDEPLGRLRLSLNVI 307 (789)
Q Consensus 287 d~d~~~~d~~iG~~~i~l~~l 307 (789)
|++..+++++||++.++....
T Consensus 90 d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 90 SRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred eCCCCcCCceEEEEEECCccC
Confidence 998888999999999998753
No 183
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.56 E-value=4.7e-14 Score=129.60 Aligned_cols=118 Identities=22% Similarity=0.246 Sum_probs=91.8
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEEC-------------CEEEeeccccCCCCCcc-ccEEEEEEeCCCceEE
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG-------------LKWVRTRTLVDNFNPKW-NEQYTWEVYDPCTVIT 447 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~-------------~~~~~T~~~~~t~~P~w-ne~~~f~v~~~~~~l~ 447 (789)
...|.+++|+||+ .+ ..|.+||||++++. ++.++|+++++++||+| ||.|.|.+. +.+.|.
T Consensus 2 ~~~~~~~~A~~L~-~~---~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~-~~~~L~ 76 (137)
T cd08691 2 SFSLSGLQARNLK-KG---MFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL-PTDVLE 76 (137)
T ss_pred EEEEEEEEeCCCC-Cc---cCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC-CCCEEE
Confidence 4689999999997 43 35799999999983 24799999999999999 999999986 467899
Q ss_pred EEEEeCCCCCCCCCCCCCccEEEEEECcccccC---ceEeeeEeeeecCCCCCccceEEEEEE
Q 003882 448 LGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEAD---RIYTHSYPLLVLNPSGVKKMGELQLAV 507 (789)
Q Consensus 448 v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~---~~~~~~~~L~~~~~~g~~~~G~i~l~~ 507 (789)
|+|||++..+ ....+++||++.|+++++..+ .....||+|......+ ..+|+|.+.+
T Consensus 77 v~V~D~~~~~--~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s-~v~G~~~l~~ 136 (137)
T cd08691 77 IEVKDKFAKS--RPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTD-HVSGQLTFRF 136 (137)
T ss_pred EEEEecCCCC--CccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCC-cEEEEEEEEe
Confidence 9999976532 001278999999999999865 2467899997443322 3369888764
No 184
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.56 E-value=6.1e-15 Score=136.61 Aligned_cols=105 Identities=18% Similarity=0.280 Sum_probs=87.7
Q ss_pred CCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeCC---CceEEE
Q 003882 377 KQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL-----KWVRTRTLVDNFNPKWNEQYTWEVYDP---CTVITL 448 (789)
Q Consensus 377 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v 448 (789)
.+..|.|.|+|++|+||+.++. .|.+||||+|.+.+ ...+|+++++++||+|||.|.|.+..+ ...|.|
T Consensus 9 ~~~~~~L~V~Vi~a~~L~~~d~---~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~ 85 (133)
T cd08384 9 NTQRRGLIVGIIRCVNLAAMDA---NGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEI 85 (133)
T ss_pred cCCCCEEEEEEEEEcCCCCcCC---CCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEE
Confidence 3445899999999999998743 47899999999842 458999999999999999999998753 468999
Q ss_pred EEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeee
Q 003882 449 GVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLV 491 (789)
Q Consensus 449 ~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 491 (789)
+|||++..+ ++++||.+.+++.. .+....+||++..
T Consensus 86 ~V~d~d~~~-----~~~~lG~~~i~l~~--~~~~~~~W~~~l~ 121 (133)
T cd08384 86 TVWDKDIGK-----SNDYIGGLQLGINA--KGERLRHWLDCLK 121 (133)
T ss_pred EEEeCCCCC-----CccEEEEEEEecCC--CCchHHHHHHHHh
Confidence 999999865 78999999999986 3445578998753
No 185
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.56 E-value=1.2e-14 Score=134.84 Aligned_cols=102 Identities=20% Similarity=0.313 Sum_probs=86.3
Q ss_pred ccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeC---CCceEEEEEE
Q 003882 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL-----KWVRTRTLVDNFNPKWNEQYTWEVYD---PCTVITLGVF 451 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v~v~ 451 (789)
.+.|.|.|++|+||+.++ .+.+||||+|.+.+ .+.+|++++++.||.|||.|.|.+.. ....|.|+|+
T Consensus 14 ~~~L~V~V~~a~nL~~~~----~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~ 89 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD----HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVM 89 (137)
T ss_pred CCeEEEEEEEecCCCccc----CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEE
Confidence 369999999999999874 46799999998832 35799999999999999999999864 2468999999
Q ss_pred eCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeee
Q 003882 452 DNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490 (789)
Q Consensus 452 d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 490 (789)
|.+..+ ++++||++.|+......+...++|..+.
T Consensus 90 ~~~~~~-----~~~~lG~v~ig~~~~~~~~~~~hW~~~~ 123 (137)
T cd08409 90 QSGGVR-----KSKLLGRVVLGPFMYARGKELEHWNDML 123 (137)
T ss_pred eCCCCC-----CcceEEEEEECCcccCCChHHHHHHHHH
Confidence 999865 8899999999987777677778888875
No 186
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.56 E-value=4.8e-14 Score=130.51 Aligned_cols=104 Identities=13% Similarity=0.175 Sum_probs=85.2
Q ss_pred CCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEEC---C---EEEeeccccCCCCCccccEEEEEEeC---CCceEEE
Q 003882 378 QPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG---L---KWVRTRTLVDNFNPKWNEQYTWEVYD---PCTVITL 448 (789)
Q Consensus 378 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~---~---~~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v 448 (789)
+..+.|.|+|++|+||+.++ ..|.+||||++.+. + .+.||++++++.||+|||.|.|.+.. ....|.|
T Consensus 12 ~~~~~L~V~VikarnL~~~~---~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~ 88 (138)
T cd08408 12 ALTGRLSVEVIKGSNFKNLA---MNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMF 88 (138)
T ss_pred CCCCeEEEEEEEecCCCccc---cCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEE
Confidence 34579999999999999874 45789999999883 2 25799999999999999999999974 3569999
Q ss_pred EEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeee
Q 003882 449 GVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490 (789)
Q Consensus 449 ~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 490 (789)
+|||.+.++ ++++||.+.+++..... ...++|+.+.
T Consensus 89 ~V~~~~~~~-----~~~~iG~v~l~~~~~~~-~~~~hW~~~l 124 (138)
T cd08408 89 SVYNKRKMK-----RKEMIGWFSLGLNSSGE-EEEEHWNEMK 124 (138)
T ss_pred EEEECCCCC-----CCcEEEEEEECCcCCCc-hHHHHHHHHH
Confidence 999999875 88999999999876532 2336787775
No 187
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.55 E-value=1.6e-14 Score=133.85 Aligned_cols=105 Identities=23% Similarity=0.308 Sum_probs=85.7
Q ss_pred CCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEEC--C---EEEeeccccCCCCCccccEEEEEEeCC---CceEEE
Q 003882 377 KQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG--L---KWVRTRTLVDNFNPKWNEQYTWEVYDP---CTVITL 448 (789)
Q Consensus 377 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~--~---~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v 448 (789)
.+..|.|+|+|++|++|+.++. .|.+||||+|.+. + ...+|+++++++||.|||.|.|.+... ...|.|
T Consensus 10 ~~~~~~L~V~v~~A~~L~~~d~---~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~ 86 (134)
T cd08403 10 LPTAGRLTLTIIKARNLKAMDI---TGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLII 86 (134)
T ss_pred cCCCCEEEEEEEEeeCCCcccc---CCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEE
Confidence 3445899999999999998743 5789999999983 2 357999999999999999999998642 347999
Q ss_pred EEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeee
Q 003882 449 GVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLV 491 (789)
Q Consensus 449 ~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 491 (789)
+|||++.++ .+++||++.|++.. .++...+|+++..
T Consensus 87 ~v~d~~~~~-----~~~~IG~~~l~~~~--~~~~~~~w~~~~~ 122 (134)
T cd08403 87 AVVDYDRVG-----HNELIGVCRVGPNA--DGQGREHWNEMLA 122 (134)
T ss_pred EEEECCCCC-----CCceeEEEEECCCC--CCchHHHHHHHHH
Confidence 999999876 79999999999873 3445578888753
No 188
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.54 E-value=1.6e-14 Score=134.17 Aligned_cols=103 Identities=24% Similarity=0.353 Sum_probs=88.3
Q ss_pred ccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeCC---CceEEEEEE
Q 003882 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL-----KWVRTRTLVDNFNPKWNEQYTWEVYDP---CTVITLGVF 451 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~ 451 (789)
.+.|.|.|++|+||+..+ ..+.+||||++.+.+ ...+|+++.++.||.|||.|.|.+... ...|.|+||
T Consensus 13 ~~~L~V~v~~a~~L~~~~---~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~ 89 (134)
T cd00276 13 AERLTVVVLKARNLPPSD---GKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVV 89 (134)
T ss_pred CCEEEEEEEEeeCCCCcc---CCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEE
Confidence 369999999999999874 357899999999843 257999999999999999999998764 578999999
Q ss_pred eCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeec
Q 003882 452 DNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVL 492 (789)
Q Consensus 452 d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 492 (789)
|.+..+ .+++||.+.+++++ .+...+.|++|...
T Consensus 90 d~~~~~-----~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 90 DKDSVG-----RNEVIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred ecCCCC-----CCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 998864 78999999999999 56667999999754
No 189
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.54 E-value=1.1e-13 Score=121.53 Aligned_cols=93 Identities=26% Similarity=0.477 Sum_probs=73.6
Q ss_pred EEEEEEEccCCCCCccCCCCCCcCcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCC---
Q 003882 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL-----KWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNC--- 454 (789)
Q Consensus 383 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~--- 454 (789)
|.|+|.+|+||+ +.+||||++.++. ..+||+++++|+||+|||.|.|++.. ...|.+.|||++
T Consensus 1 L~V~V~~A~~L~--------~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~ 71 (118)
T cd08686 1 LNVIVHSAQGFK--------QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSK 71 (118)
T ss_pred CEEEEEeCCCCC--------CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEccccc
Confidence 579999999995 4689999998842 46999999999999999999999874 779999999983
Q ss_pred ----CCCCCCCCCCCccEEEEEECcc--cccCceEeeeEee
Q 003882 455 ----HLGGSGTKPDSRIGKVRIRLST--LEADRIYTHSYPL 489 (789)
Q Consensus 455 ----~~~~~~~~~d~~lG~~~i~l~~--l~~~~~~~~~~~L 489 (789)
.. +.|+++|++.|.|.. +....+....+.|
T Consensus 72 ~~~d~~-----~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~ 107 (118)
T cd08686 72 VKLDGE-----GTDAIMGKGQIQLDPQSLQTKKWQEKVISM 107 (118)
T ss_pred cccccc-----CcccEEEEEEEEECHHHhccCCeeEEEEEe
Confidence 33 379999888777644 4444444444544
No 190
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.54 E-value=5.3e-15 Score=151.21 Aligned_cols=103 Identities=23% Similarity=0.437 Sum_probs=92.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCeEEEEEEC-----CeEEeeecccCCCCCCccCceeEEEeeCC-CCCeEEEEEEEccCC
Q 003882 218 YLRVNVIEAQDVEPLDKSQLPQAFVEAQVG-----NQVLKTKLCPTRTTNPLWNEDLIFVAAEP-FEEQLVLTVENKVTP 291 (789)
Q Consensus 218 ~L~V~v~~ar~L~~~~~~~~~dpyv~v~l~-----~~~~kT~~~~~~t~nP~wne~f~f~~~~~-~~~~l~i~V~d~d~~ 291 (789)
.|.|+|.+|+||.++|.+|.+||||++.+- ..+++|++++. ++||+|||+|+|.+... .+..|.|+|||+|..
T Consensus 181 ~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~-~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrT 259 (683)
T KOG0696|consen 181 VLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKA-TLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRT 259 (683)
T ss_pred eEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhh-hcCccccceeEEecccccccceeEEEEeccccc
Confidence 599999999999999999999999999995 25789999997 99999999999998554 566899999999999
Q ss_pred CCCCceEEEEEeccccccccCCCCCcceeEEcccc
Q 003882 292 AKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKF 326 (789)
Q Consensus 292 ~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 326 (789)
++++++|+.++.+++|.+ ...+.||.|..+
T Consensus 260 sRNDFMGslSFgisEl~K-----~p~~GWyKlLsq 289 (683)
T KOG0696|consen 260 SRNDFMGSLSFGISELQK-----APVDGWYKLLSQ 289 (683)
T ss_pred ccccccceecccHHHHhh-----cchhhHHHHhhh
Confidence 999999999999999974 347789998876
No 191
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.54 E-value=1e-13 Score=126.49 Aligned_cols=98 Identities=26% Similarity=0.371 Sum_probs=81.7
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEEC-----CEEEeeccccCCCCCccccEEEEEEeCC----CceEEEEEE
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG-----LKWVRTRTLVDNFNPKWNEQYTWEVYDP----CTVITLGVF 451 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~wne~~~f~v~~~----~~~l~v~v~ 451 (789)
+.|+|+|++|++|+..+ ..+.+||||++.+. ....||++++++.||.|||.|.|..... ...+.|+||
T Consensus 15 ~~L~V~v~~a~~L~~~~---~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~ 91 (123)
T cd04035 15 SALHCTIIRAKGLKAMD---ANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVL 91 (123)
T ss_pred CEEEEEEEEeeCCCCCC---CCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEE
Confidence 69999999999999774 34789999999872 2469999999999999999999964432 468999999
Q ss_pred eCCCCCCCCCCCCCccEEEEEECcccccCceEeeeE
Q 003882 452 DNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSY 487 (789)
Q Consensus 452 d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~ 487 (789)
|++.. .+++||.+.++++++..+.....|+
T Consensus 92 d~~~~------~~~~iG~~~i~l~~l~~~~~~~~~~ 121 (123)
T cd04035 92 DEDRF------GNDFLGETRIPLKKLKPNQTKQFNI 121 (123)
T ss_pred EcCCc------CCeeEEEEEEEcccCCCCcceEeec
Confidence 98874 5789999999999999877555544
No 192
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.53 E-value=5.6e-14 Score=128.01 Aligned_cols=89 Identities=27% Similarity=0.424 Sum_probs=78.7
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEE--EeeccccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCCCC
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKW--VRTRTLVDNFNPKWNEQYTWEVYDP-CTVITLGVFDNCHLGG 458 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~--~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~~~~ 458 (789)
.|+|.|++|+||+.++ ..+.+||||++.++++. .||+++++++||+|||.|.|.+..+ ...|.|+|||++.++
T Consensus 1 ~lrV~Vi~a~~L~~~d---~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~- 76 (124)
T cd04037 1 LVRVYVVRARNLQPKD---PNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLG- 76 (124)
T ss_pred CEEEEEEECcCCCCCC---CCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCC-
Confidence 3789999999999874 45799999999998876 5788899999999999999998765 578999999999876
Q ss_pred CCCCCCCccEEEEEECcccc
Q 003882 459 SGTKPDSRIGKVRIRLSTLE 478 (789)
Q Consensus 459 ~~~~~d~~lG~~~i~l~~l~ 478 (789)
.|++||++.+++.+..
T Consensus 77 ----~dd~iG~~~i~l~~~~ 92 (124)
T cd04037 77 ----SDDLIGETVIDLEDRF 92 (124)
T ss_pred ----CCceeEEEEEeecccc
Confidence 8899999999999865
No 193
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.53 E-value=9.1e-14 Score=129.21 Aligned_cols=104 Identities=22% Similarity=0.336 Sum_probs=85.1
Q ss_pred cEEEEEEEEEeecCCCCCCCCCCCeEEEEEEC--C---eEEeeecccCCCCCCccCceeEEEeeCC--CCCeEEEEEEEc
Q 003882 216 LWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVG--N---QVLKTKLCPTRTTNPLWNEDLIFVAAEP--FEEQLVLTVENK 288 (789)
Q Consensus 216 ~~~L~V~v~~ar~L~~~~~~~~~dpyv~v~l~--~---~~~kT~~~~~~t~nP~wne~f~f~~~~~--~~~~l~i~V~d~ 288 (789)
.+.|.|+|++|++|+..+..+.+||||++.+. + ..++|+++++ +.||.|||.|.|.+... .+..|.|+|||+
T Consensus 14 ~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~ 92 (136)
T cd08405 14 ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKR-TLNPVFNESFIFNIPLERLRETTLIITVMDK 92 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeC-CCCCcccceEEEeCCHHHhCCCEEEEEEEEC
Confidence 34699999999999998888999999999983 2 3578999986 99999999999987532 356799999999
Q ss_pred cCCCCCCceEEEEEeccccccccCCCCCcceeEEcccc
Q 003882 289 VTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKF 326 (789)
Q Consensus 289 d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 326 (789)
+..+++++||++.+++.+.. ....+|+++...
T Consensus 93 ~~~~~~~~lG~~~i~~~~~~------~~~~~w~~~~~~ 124 (136)
T cd08405 93 DRLSRNDLIGKIYLGWKSGG------LELKHWKDMLSK 124 (136)
T ss_pred CCCCCCcEeEEEEECCccCC------chHHHHHHHHhC
Confidence 99899999999999998652 224566666544
No 194
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.53 E-value=5.7e-14 Score=123.23 Aligned_cols=79 Identities=25% Similarity=0.460 Sum_probs=69.0
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeC------
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDR------ 124 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~------ 124 (789)
|.|+|++|+||+ +.+||||++.+++ .+++|+++++|+||+|||+|.|.+.. ...|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEccccccc
Confidence 679999999996 4589999999974 35899999999999999999999974 57999999998
Q ss_pred -CCCCCCceeEEEEEEcc
Q 003882 125 -EIVGRDDYIGKVVFDMN 141 (789)
Q Consensus 125 -~~~~~d~~lG~~~i~l~ 141 (789)
|..++|+++|.+.+.|.
T Consensus 74 ~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred ccccCcccEEEEEEEEEC
Confidence 46678999988888765
No 195
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.52 E-value=2.9e-14 Score=175.83 Aligned_cols=118 Identities=25% Similarity=0.453 Sum_probs=101.8
Q ss_pred CccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeCCC--ceEEEEEEeCCC
Q 003882 379 PIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLK-WVRTRTLVDNFNPKWNEQYTWEVYDPC--TVITLGVFDNCH 455 (789)
Q Consensus 379 ~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~~~--~~l~v~v~d~~~ 455 (789)
..|.|.|+|++|+||. - ..+++||||++.+|++ +.||++++++.||+|||.|+|.+.+|. ..|+|+|||+|.
T Consensus 1978 ~~G~L~V~V~~a~nl~-~----~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~ 2052 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLK-Q----SMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT 2052 (2102)
T ss_pred CCcceEEEEeeccccc-c----ccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc
Confidence 4699999999999997 1 2479999999999965 789999999999999999999998864 789999999998
Q ss_pred CCCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceE---EEEEEEEee
Q 003882 456 LGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGE---LQLAVRFTC 511 (789)
Q Consensus 456 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~---i~l~~~f~~ 511 (789)
++ ++.+|++.|++.++..++.++.||+|... | ++.|+ |+++++|.+
T Consensus 2053 f~------kd~~G~~~i~l~~vv~~~~~~~~~~L~~~---~-~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2053 FG------KSSLGKVTIQIDRVVMEGTYSGEYSLNPE---S-NKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred cC------CCCCceEEEEHHHHhcCceeeeeeecCcc---c-ccCCCcceEEEEEEecC
Confidence 84 55999999999999999999999999732 2 24577 888887753
No 196
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.52 E-value=6.6e-14 Score=127.09 Aligned_cols=97 Identities=20% Similarity=0.259 Sum_probs=83.0
Q ss_pred EEEEccCCCCCccCCCCCCcCcEEEEEECCE-------EEeeccccCCCCCccccEEEEEEeC-CCceEEEEEEeCCC--
Q 003882 386 GILSAQGLLPMKTRDGRGTTDAYCVAKYGLK-------WVRTRTLVDNFNPKWNEQYTWEVYD-PCTVITLGVFDNCH-- 455 (789)
Q Consensus 386 ~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-------~~~T~~~~~t~~P~wne~~~f~v~~-~~~~l~v~v~d~~~-- 455 (789)
..++|++|+..+ ..|.+||||+|.+.+. ..||+++++++||+|||.|.|.+.. ....|.|+|||++.
T Consensus 5 ~~i~a~~L~~~d---~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~ 81 (120)
T cd04048 5 LSISCRNLLDKD---VLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKS 81 (120)
T ss_pred EEEEccCCCCCC---CCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCc
Confidence 348999999874 3578999999999553 4999999999999999999998753 46789999999996
Q ss_pred --CCCCCCCCCCccEEEEEECcccccCceEeeeEeee
Q 003882 456 --LGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490 (789)
Q Consensus 456 --~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 490 (789)
.+ ++++||.+.++++++..+.....|++|.
T Consensus 82 ~~~~-----~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 82 KDLS-----DHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCCC-----CCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 54 8899999999999999877778889984
No 197
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.51 E-value=3.1e-13 Score=124.42 Aligned_cols=117 Identities=24% Similarity=0.356 Sum_probs=93.9
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEE------CCEEEeeccccCCC-CCccccEEEEEEeCCC-ceEEEEEEeC
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY------GLKWVRTRTLVDNF-NPKWNEQYTWEVYDPC-TVITLGVFDN 453 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~------~~~~~~T~~~~~t~-~P~wne~~~f~v~~~~-~~l~v~v~d~ 453 (789)
.|+|+|++|+||+.++. +..+.+||||++++ +....||+++.++. ||.|||.|.|.+..+. ..|.|+|||+
T Consensus 3 ~l~v~vi~a~~L~~~~~-~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 3 TLTIKIISGQQLPKPKG-DKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred EEEEEEEeeecCCCCCC-CCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 78999999999998742 13568999999999 34669999988776 9999999999998754 5799999998
Q ss_pred CCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEE
Q 003882 454 CHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRF 509 (789)
Q Consensus 454 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 509 (789)
+.. ++++||.+.++++++..+ ..|++|....+. ....|.|.+.+.+
T Consensus 82 ~~~------~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~-~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSG------DDDFLGQACLPLDSLRQG---YRHVPLLDSKGE-PLELSTLFVHIDI 127 (128)
T ss_pred CCC------CCcEeEEEEEEhHHhcCc---eEEEEecCCCCC-CCcceeEEEEEEE
Confidence 864 688999999999999765 367898755332 1335888888764
No 198
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.50 E-value=1e-13 Score=123.76 Aligned_cols=90 Identities=21% Similarity=0.347 Sum_probs=78.1
Q ss_pred EEEEEEeeCCCCCCCCCCCCcEEEEEECCe------eeeeccccCCCCCeeccEEEEEccCCC----CceEEEEEEeCCC
Q 003882 57 YVRVEKARDLPTNPVSGSCDPYVEVKLGNY------KGKTRHFEKKSNPEWKQVFAFSKEKIQ----SSVLEVFVRDREI 126 (789)
Q Consensus 57 ~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~------~~~T~~~~~t~nP~wne~f~f~~~~~~----~~~l~v~V~d~~~ 126 (789)
.+-.++|++|+..+..|.+||||+|++.+. .++|+++++|.||+|| +|.|.+..+. ...|.|+|||++.
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence 345679999999999999999999998653 4799999999999999 7888864331 5799999999999
Q ss_pred CCCCceeEEEEEEccccCCCC
Q 003882 127 VGRDDYIGKVVFDMNEVPTRV 147 (789)
Q Consensus 127 ~~~d~~lG~~~i~l~~l~~~~ 147 (789)
.++|++||++.+++.+|....
T Consensus 82 ~~~d~~iG~~~~~l~~l~~~~ 102 (110)
T cd04047 82 SGKHDLIGEFETTLDELLKSS 102 (110)
T ss_pred CCCCcEEEEEEEEHHHHhcCC
Confidence 999999999999999999553
No 199
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.48 E-value=9.4e-14 Score=171.35 Aligned_cols=118 Identities=19% Similarity=0.351 Sum_probs=100.1
Q ss_pred ceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEccCCC-CceEEEEEEeCCCCCC
Q 003882 52 QMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNY-KGKTRHFEKKSNPEWKQVFAFSKEKIQ-SSVLEVFVRDREIVGR 129 (789)
Q Consensus 52 ~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~~~~~~-~~~l~v~V~d~~~~~~ 129 (789)
.+|.|.|+|++|+||. +..|.+||||+++++++ ++||++++++.||+|||+|.|.++++. .+.|+|+|||+|.++
T Consensus 1978 ~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~- 2054 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFG- 2054 (2102)
T ss_pred CCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccC-
Confidence 4599999999999998 34789999999999965 789999999999999999999987764 467999999999995
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceE---EEEEEEEe
Q 003882 130 DDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGE---VMLAVWIG 180 (789)
Q Consensus 130 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~---l~l~~~~~ 180 (789)
++.||.++|++.++..+.... .||+|.+... ..|. |.+.+.+.
T Consensus 2055 kd~~G~~~i~l~~vv~~~~~~-----~~~~L~~~~~---k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2055 KSSLGKVTIQIDRVVMEGTYS-----GEYSLNPESN---KDGSSRTLEIEFQWS 2100 (2102)
T ss_pred CCCCceEEEEHHHHhcCceee-----eeeecCcccc---cCCCcceEEEEEEec
Confidence 459999999999999876655 9999996432 2455 88876553
No 200
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=99.47 E-value=4.6e-13 Score=145.67 Aligned_cols=180 Identities=24% Similarity=0.380 Sum_probs=127.9
Q ss_pred ccccchhhHHHHHHHHHHHHhHHHHH---HHhcccccccCchhhHHHHHHHHHHHHhcch--h-HHHHHHHHHHHHhhcc
Q 003882 576 HMWSMRRSKANFFRIVSLFSGAISMS---KWLGEVRYWKNPVTTILVHVLFLILICYPEL--I-LPTIFLYMFLIGIWNY 649 (789)
Q Consensus 576 ~~~s~~~~~~n~~rl~~~~~~~~~~~---~~i~~l~~W~~p~~t~~~~~~~~~~~~~~~l--~-~p~~~l~l~~~~~~~~ 649 (789)
+.+|+..|.+|+.||.+.+..++.++ +.+.++++|++|..|..++++|+++|++|.+ + +|++++ ++++++..|
T Consensus 1 p~lS~~ll~~n~~~l~~~l~~~f~~~~~~d~vl~il~W~~p~~t~~~L~l~t~~~l~p~l~l~~lp~~~l-l~~il~~~y 79 (359)
T PF06398_consen 1 PPLSSPLLSSNFPRLSSRLGPIFPFQLILDRVLRILTWTNPDYTLSFLLLYTFLCLNPYLLLLSLPLGLL-LFGILLPSY 79 (359)
T ss_pred CCcChHHHHhChHHHHHHHHHhhHHHHHHHHHHHeEEeCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 45789999999999999999999999 9999999999999999999999999999998 3 443333 455666666
Q ss_pred ccCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHh----ccccC
Q 003882 650 RFRPRHPPHMDTKLSWADAVHPDELDEEFDTFPTSKQQDVVRMRYDRLRSVAGRIQTVVGDMATQGERFQA----LLSWR 725 (789)
Q Consensus 650 ~~~~~~~~~~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~vq~~l~~~a~~~e~~~~----l~~w~ 725 (789)
..++..+.. ... . ..++.+.+.+..|+-.+ . .++.+.+|++ +||.|+.+.+.++.+.. .++|+
T Consensus 80 l~~~p~~~~-~~~-~-----~~~~~~~~~~~~ptl~~-~-s~e~~~nL~d----lQn~m~~~~~~~d~~~~~~~~~~~f~ 146 (359)
T PF06398_consen 80 LYRHPSPTS-SLP-K-----SYEDHNPEPSEGPTLDK-P-SREIVMNLRD----LQNKMEDLSDPYDFLSSFLYPYLNFS 146 (359)
T ss_pred HeecCCCcc-ccc-c-----cccccCCCcCCCCCcch-h-HHHHHHHHHH----HHHHHHHHHHHHHHHHHhhcccccCC
Confidence 665522211 110 0 00011111111111010 1 2455555655 99999999999888874 45799
Q ss_pred CchhhHHHHHHHHHHHHHH----hhhhhHHHHhhhhhh-hccCCcccCC
Q 003882 726 DPRATSLFVIFCLIAAVVL----YVTPFKIITLVAGLF-WLRHPRFRSK 769 (789)
Q Consensus 726 ~p~~t~~~~~~l~~~~~~~----~~iP~r~i~l~~g~~-~~~~P~~r~~ 769 (789)
++..|.+++++|+++.+.+ .++|+|++++++|.. ++.||..++.
T Consensus 147 ~e~~s~~~f~~l~~~~~~~~l~~~~ip~r~~ll~~g~~~l~~Hp~~~~~ 195 (359)
T PF06398_consen 147 DENLSSLIFLLLLLSPILLLLLSPFIPWRFVLLVSGAFVLLYHPPWRQA 195 (359)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCcHHHH
Confidence 9999999888887776644 458999999999944 7889988753
No 201
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.44 E-value=5e-13 Score=113.17 Aligned_cols=82 Identities=35% Similarity=0.594 Sum_probs=75.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCce
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGN---YKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDY 132 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~ 132 (789)
|.|+|++|+||...+..+.+||||++.+.+ ..++|+++.++.+|.|||+|.|.+.......|.|+|||++..++|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 789999999999988888999999999998 67999999999999999999999766666779999999999988999
Q ss_pred eEEEE
Q 003882 133 IGKVV 137 (789)
Q Consensus 133 lG~~~ 137 (789)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
No 202
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=2.5e-13 Score=144.47 Aligned_cols=121 Identities=28% Similarity=0.524 Sum_probs=107.0
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCC------
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIV------ 127 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~------ 127 (789)
..++++|+.|.+|.++|..|++||||.+.++..++||++|...+||+|||.|+|...+. ++.+.+.|||.|..
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechns-tdrikvrvwded~dlksklr 373 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNS-TDRIKVRVWDEDNDLKSKLR 373 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCC-CceeEEEEecCcccHHHHHH
Confidence 45889999999999999999999999999999999999999999999999999999876 58999999998862
Q ss_pred -----CCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEeec
Q 003882 128 -----GRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGTQ 182 (789)
Q Consensus 128 -----~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~ 182 (789)
.+|+|||+..|.+..|... .+ .||.|+.+..++...|.|.+.+.+.-.
T Consensus 374 qkl~resddflgqtvievrtlsge--md-----vwynlekrtdksavsgairlhisveik 426 (1283)
T KOG1011|consen 374 QKLTRESDDFLGQTVIEVRTLSGE--MD-----VWYNLEKRTDKSAVSGAIRLHISVEIK 426 (1283)
T ss_pred HHhhhcccccccceeEEEEecccc--hh-----hhcchhhccchhhccceEEEEEEEEEc
Confidence 3789999999999988765 23 899999988777788988888776543
No 203
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.38 E-value=2e-12 Score=115.48 Aligned_cols=88 Identities=20% Similarity=0.229 Sum_probs=73.2
Q ss_pred EEEEEccCCCCCccCCCCCCcCcEEEEEECC------EEEeeccccCCCCCccccEEEEEEeC-----CCceEEEEEEeC
Q 003882 385 VGILSAQGLLPMKTRDGRGTTDAYCVAKYGL------KWVRTRTLVDNFNPKWNEQYTWEVYD-----PCTVITLGVFDN 453 (789)
Q Consensus 385 v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~------~~~~T~~~~~t~~P~wne~~~f~v~~-----~~~~l~v~v~d~ 453 (789)
+..++|++|+.++ ..+.+||||+|++.+ ..++|+++++++||+|| .|.|++.+ +...|.|+|||+
T Consensus 4 ~~~i~a~~L~~~d---~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~ 79 (110)
T cd04047 4 ELQFSGKKLDKKD---FFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDY 79 (110)
T ss_pred EEEEEeCCCCCCC---CCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEe
Confidence 4457999999874 457899999998843 25999999999999999 68887643 257999999999
Q ss_pred CCCCCCCCCCCCccEEEEEECcccccCc
Q 003882 454 CHLGGSGTKPDSRIGKVRIRLSTLEADR 481 (789)
Q Consensus 454 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 481 (789)
+..+ +|++||++.++++++...+
T Consensus 80 d~~~-----~d~~iG~~~~~l~~l~~~~ 102 (110)
T cd04047 80 DSSG-----KHDLIGEFETTLDELLKSS 102 (110)
T ss_pred CCCC-----CCcEEEEEEEEHHHHhcCC
Confidence 9876 8999999999999998544
No 204
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=3.2e-13 Score=134.58 Aligned_cols=219 Identities=20% Similarity=0.253 Sum_probs=161.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCeEEEEEECC-----eEEeeecccCCCCCCccCceeEEE--eeCC-CCCeEEEEEEEcc
Q 003882 218 YLRVNVIEAQDVEPLDKSQLPQAFVEAQVGN-----QVLKTKLCPTRTTNPLWNEDLIFV--AAEP-FEEQLVLTVENKV 289 (789)
Q Consensus 218 ~L~V~v~~ar~L~~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~~t~nP~wne~f~f~--~~~~-~~~~l~i~V~d~d 289 (789)
.+..++..|++|.+++.++..|||++..++. .+.+|++..+ +.||.|+|...+. ..+. ....+.+.|.|.+
T Consensus 94 ~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n-~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~ 172 (362)
T KOG1013|consen 94 MLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRN-TLNPEWNETEVYEGITDDDTHLKVLRKVVCDND 172 (362)
T ss_pred hcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhcc-CcCcceeccceecccccchhhhhhhheeeccCc
Confidence 4789999999999999999999999999974 3477888876 9999999986554 3332 4456788889999
Q ss_pred CCCCCCceEEEEEeccccccccCCCCCcceeEEccccCcccchhcccccccccceEEEEEEEcCcccccCCcccccCCCC
Q 003882 290 TPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKFGFGALELDKRHELKFSSRIHLRVCLEGAYHVMDESTMYISDQR 369 (789)
Q Consensus 290 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~ 369 (789)
.+..++++|+..+.+..+...+. .....|+.-.-+. +.+.....+.+|.|.+++...
T Consensus 173 ~~~~~~sqGq~r~~lkKl~p~q~--k~f~~cl~~~lp~----~rad~~~~E~rg~i~isl~~~----------------- 229 (362)
T KOG1013|consen 173 KKTHNESQGQSRVSLKKLKPLQR--KSFNICLEKSLPS----ERADRDEDEERGAILISLAYS----------------- 229 (362)
T ss_pred ccccccCcccchhhhhccChhhc--chhhhhhhccCCc----ccccccchhhccceeeeeccC-----------------
Confidence 99999999999988887754332 2233444433321 000011134567776666432
Q ss_pred cccccccCCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeCC--
Q 003882 370 PTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL-----KWVRTRTLVDNFNPKWNEQYTWEVYDP-- 442 (789)
Q Consensus 370 ~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~-- 442 (789)
....-+.|.+++|..|..+ |.+|.+||||..++.. .+.+|.+.++|.+|.||++|.|.+..-
T Consensus 230 --------s~~~~l~vt~iRc~~l~ss---Dsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdL 298 (362)
T KOG1013|consen 230 --------STTPGLIVTIIRCSHLASS---DSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDL 298 (362)
T ss_pred --------cCCCceEEEEEEeeeeecc---ccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccch
Confidence 1224788999999999988 4568999999998832 248899999999999999999988752
Q ss_pred -CceEEEEEEeCCCCCCCCCCCCCccEEEEEECcc
Q 003882 443 -CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLST 476 (789)
Q Consensus 443 -~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~ 476 (789)
...+.|.|+|++.- ...+++|-+...+..
T Consensus 299 a~~kv~lsvgd~~~G-----~s~d~~GG~~~g~~r 328 (362)
T KOG1013|consen 299 AYKKVALSVGDYDIG-----KSNDSIGGSMLGGYR 328 (362)
T ss_pred hcceEEEeecccCCC-----cCccCCCcccccccc
Confidence 45899999998873 366788877665444
No 205
>PLN02270 phospholipase D alpha
Probab=99.35 E-value=6.3e-12 Score=142.41 Aligned_cols=127 Identities=17% Similarity=0.270 Sum_probs=108.1
Q ss_pred cEEEEEEEEccCCCCCcc---------------CCCCCCcCcEEEEEECCEE-EeeccccCC-CCCccccEEEEEEeCCC
Q 003882 381 GILEVGILSAQGLLPMKT---------------RDGRGTTDAYCVAKYGLKW-VRTRTLVDN-FNPKWNEQYTWEVYDPC 443 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~---------------~~~~~~~dpyv~v~~~~~~-~~T~~~~~t-~~P~wne~~~f~v~~~~ 443 (789)
|.|.|+|++|++|++++. ..+.+.+||||.|.+++.+ .||+++.+. .||+|||.|.+++.++.
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~~ 87 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHMA 87 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccCc
Confidence 899999999999986421 0134678999999998764 799999884 69999999999999999
Q ss_pred ceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEEeecC
Q 003882 444 TVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRFTCLS 513 (789)
Q Consensus 444 ~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~~ 513 (789)
+.++|+|.|.|.++ ..+||++.||+.++.+|..+++|+++.+.+.+..+...+|+++++|.+..
T Consensus 88 ~~v~f~vkd~~~~g------~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~ 151 (808)
T PLN02270 88 SNIIFTVKDDNPIG------ATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVT 151 (808)
T ss_pred ceEEEEEecCCccC------ceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEcc
Confidence 99999999999984 66999999999999999999999999877544444456999999998753
No 206
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.28 E-value=3.6e-11 Score=104.77 Aligned_cols=100 Identities=35% Similarity=0.613 Sum_probs=87.0
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCceeE
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGN-YKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYIG 134 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~lG 134 (789)
|.|+|++|++|......+.++|||.+.+.+ ..++|+++.++.||.|||.|.|.+.......|.|+|||.+..+++.++|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 579999999998866677899999999998 8899999999999999999999997745689999999999987899999
Q ss_pred EEEEEccccC-CCCCCCCCCCCeeEEc
Q 003882 135 KVVFDMNEVP-TRVPPDSPLAPQWYRL 160 (789)
Q Consensus 135 ~~~i~l~~l~-~~~~~~~~~~~~w~~L 160 (789)
.+.+++.++. ...... .|++|
T Consensus 81 ~~~~~l~~l~~~~~~~~-----~~~~l 102 (102)
T cd00030 81 EVEIPLSELLDSGKEGE-----LWLPL 102 (102)
T ss_pred EEEEeHHHhhhcCCcCc-----ceecC
Confidence 9999999998 443333 78765
No 207
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=5.2e-12 Score=134.66 Aligned_cols=123 Identities=27% Similarity=0.412 Sum_probs=102.0
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCC-
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGS- 459 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~- 459 (789)
..++++|+.|+||.+.| ..|++||||.+.+|..+.||+++-..+||+|||.|.|+.....+.|++.|||+|.--..
T Consensus 295 akitltvlcaqgl~akd---ktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksk 371 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKD---KTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSK 371 (1283)
T ss_pred eeeEEeeeecccceecc---cCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHH
Confidence 58999999999999884 45899999999999999999999999999999999999999899999999998852210
Q ss_pred -----CCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEE
Q 003882 460 -----GTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRF 509 (789)
Q Consensus 460 -----~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 509 (789)
....|||+|+..|.+..+. +..+.||.|.....+.. .+|.|+|.|..
T Consensus 372 lrqkl~resddflgqtvievrtls--gemdvwynlekrtdksa-vsgairlhisv 423 (1283)
T KOG1011|consen 372 LRQKLTRESDDFLGQTVIEVRTLS--GEMDVWYNLEKRTDKSA-VSGAIRLHISV 423 (1283)
T ss_pred HHHHhhhcccccccceeEEEEecc--cchhhhcchhhccchhh-ccceEEEEEEE
Confidence 2457999999999999985 45689999975544333 35877766644
No 208
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.24 E-value=4.1e-11 Score=108.45 Aligned_cols=92 Identities=25% Similarity=0.348 Sum_probs=79.3
Q ss_pred EEEEEEEeeCCCCCC--CCC--CCCcEEEEEECC---eeeeeccccCCCC--CeeccEEEEEccC---------------
Q 003882 56 LYVRVEKARDLPTNP--VSG--SCDPYVEVKLGN---YKGKTRHFEKKSN--PEWKQVFAFSKEK--------------- 111 (789)
Q Consensus 56 L~V~v~~a~~L~~~~--~~g--~~dpyv~v~~~~---~~~~T~~~~~t~n--P~wne~f~f~~~~--------------- 111 (789)
|+|.|.+|+|++..+ ..| .+||||++.+.+ .+++|.+..+++| |+||+.|.|++..
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 899999999966543 355 499999999986 4689999999999 9999999998643
Q ss_pred --------CCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCC
Q 003882 112 --------IQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRV 147 (789)
Q Consensus 112 --------~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~ 147 (789)
.....|.++|||.|.+++|++||++.++|..+....
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 235789999999999999999999999999988764
No 209
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.24 E-value=6.4e-11 Score=103.41 Aligned_cols=93 Identities=34% Similarity=0.590 Sum_probs=83.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCe---eeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCce
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNY---KGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDY 132 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~ 132 (789)
|.|+|++|++|......+..+|||++++.+. .++|+++.++.||.|||+|.|.+.......|.|+|||.+..+.+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 7899999999998876578999999999975 7899999999999999999999977656899999999998777999
Q ss_pred eEEEEEEccccCCCCC
Q 003882 133 IGKVVFDMNEVPTRVP 148 (789)
Q Consensus 133 lG~~~i~l~~l~~~~~ 148 (789)
+|.+.+++.++..+..
T Consensus 82 ~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 82 IGQVTIPLSDLLLGGR 97 (101)
T ss_pred eEEEEEEHHHcccCcc
Confidence 9999999999887643
No 210
>PLN02223 phosphoinositide phospholipase C
Probab=99.21 E-value=1.3e-10 Score=126.88 Aligned_cols=118 Identities=17% Similarity=0.195 Sum_probs=96.2
Q ss_pred eEEEEEEEEeeCCCCC-----CCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEe
Q 003882 54 FYLYVRVEKARDLPTN-----PVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRD 123 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~-----~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d 123 (789)
..|.|+|+.|.++... +....+||||+|.+.| .+++|++..++.||+|||+|.|.+..++-..|+|+|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 5799999999987521 2234579999999976 25678888888999999999999988877889999999
Q ss_pred CCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEE
Q 003882 124 REIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWI 179 (789)
Q Consensus 124 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 179 (789)
+|..++++|+|++.+|+..|..+- ++++|.+..|..-..-.|.+.+.+
T Consensus 489 ~D~~~~ddfiGQ~~LPv~~Lr~Gy--------R~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 489 YEVSTADAFCGQTCLPVSELIEGI--------RAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred cCCCCCCcEEEEEecchHHhcCCc--------eeEeccCCCcCCCCCceEEEEEEe
Confidence 998888999999999999999874 678999888764344556665543
No 211
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.21 E-value=4.9e-11 Score=100.85 Aligned_cols=82 Identities=30% Similarity=0.505 Sum_probs=74.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCeEEEEEECC---eEEeeecccCCCCCCccCceeEEEeeCCCCCeEEEEEEEccCCCCCC
Q 003882 219 LRVNVIEAQDVEPLDKSQLPQAFVEAQVGN---QVLKTKLCPTRTTNPLWNEDLIFVAAEPFEEQLVLTVENKVTPAKDE 295 (789)
Q Consensus 219 L~V~v~~ar~L~~~~~~~~~dpyv~v~l~~---~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~d~~~~d~ 295 (789)
|+|+|++|++|+..+..+.+||||++.+++ ..++|+++++ +.+|.|+|+|.|.+..+..+.|.|+|||++..++++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~ 79 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKN-TSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDE 79 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSS-BSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeec-cccceeeeeeeeeeecccccceEEEEEECCCCCCCC
Confidence 689999999999988888999999999987 6799999987 899999999999987776777999999999988899
Q ss_pred ceEEEE
Q 003882 296 PLGRLR 301 (789)
Q Consensus 296 ~iG~~~ 301 (789)
+||++.
T Consensus 80 ~iG~~~ 85 (85)
T PF00168_consen 80 LIGEVK 85 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999874
No 212
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.18 E-value=1.4e-10 Score=101.05 Aligned_cols=99 Identities=28% Similarity=0.479 Sum_probs=84.7
Q ss_pred EEEEEEEccCCCCCccCCCCCCcCcEEEEEECC-EEEeeccccCCCCCccccEEEEEEeC-CCceEEEEEEeCCCCCCCC
Q 003882 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL-KWVRTRTLVDNFNPKWNEQYTWEVYD-PCTVITLGVFDNCHLGGSG 460 (789)
Q Consensus 383 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-~~~~T~~~~~t~~P~wne~~~f~v~~-~~~~l~v~v~d~~~~~~~~ 460 (789)
|.|.|++|++|.... ..+..||||.+.+.+ ..++|+++.++.||.|||.|.|++.. ....+.|+|||.+..+
T Consensus 1 l~v~i~~~~~l~~~~---~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~--- 74 (102)
T cd00030 1 LRVTVIEARNLPAKD---LNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFS--- 74 (102)
T ss_pred CEEEEEeeeCCCCcC---CCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCC---
Confidence 468999999998652 345799999999987 88999999999999999999999997 6789999999988764
Q ss_pred CCCCCccEEEEEECcccc-cCceEeeeEee
Q 003882 461 TKPDSRIGKVRIRLSTLE-ADRIYTHSYPL 489 (789)
Q Consensus 461 ~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L 489 (789)
.+.+||++.+++.++. .......|++|
T Consensus 75 --~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 75 --KDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred --CCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 6889999999999998 55556677664
No 213
>PLN02952 phosphoinositide phospholipase C
Probab=99.15 E-value=4.2e-10 Score=125.79 Aligned_cols=118 Identities=19% Similarity=0.310 Sum_probs=95.4
Q ss_pred eEEEEEEEEeeCCCCC------CCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEE
Q 003882 54 FYLYVRVEKARDLPTN------PVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVR 122 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~------~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~ 122 (789)
..|.|+|+.|.+++.. +.....||||+|.+-+ .+++|+++.++.||+|||+|.|.+..++-..|+|.|+
T Consensus 470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~ 549 (599)
T PLN02952 470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVR 549 (599)
T ss_pred ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEE
Confidence 5799999999987532 1123359999999976 4679999999999999999999987776678999999
Q ss_pred eCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEE
Q 003882 123 DREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWI 179 (789)
Q Consensus 123 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 179 (789)
|+|..+.++|+|++.+++..|..+- +|++|.+..|..-..-.|.+.+++
T Consensus 550 D~D~~~~ddfiGq~~lPv~~Lr~Gy--------R~VpL~~~~G~~l~~a~Llv~f~~ 598 (599)
T PLN02952 550 EYDMSEKDDFGGQTCLPVSELRPGI--------RSVPLHDKKGEKLKNVRLLMRFIF 598 (599)
T ss_pred ecCCCCCCCeEEEEEcchhHhcCCc--------eeEeCcCCCCCCCCCEEEEEEEEe
Confidence 9999888999999999999999874 799999887764333445555443
No 214
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.14 E-value=2.5e-10 Score=103.32 Aligned_cols=94 Identities=21% Similarity=0.285 Sum_probs=77.7
Q ss_pred EEEEEEEccCCCCCccC-CCCCCcCcEEEEEECC---EEEeeccccCCCC--CccccEEEEEEeCC--------------
Q 003882 383 LEVGILSAQGLLPMKTR-DGRGTTDAYCVAKYGL---KWVRTRTLVDNFN--PKWNEQYTWEVYDP-------------- 442 (789)
Q Consensus 383 l~v~v~~a~~L~~~~~~-~~~~~~dpyv~v~~~~---~~~~T~~~~~t~~--P~wne~~~f~v~~~-------------- 442 (789)
|+|.|.+|+|++..+.. .+...+||||++.+.+ .+.+|.+.++++| |.||+.|.|++..+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 78999999997765432 1222599999999854 5699999999999 99999999987651
Q ss_pred ----------CceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccCc
Q 003882 443 ----------CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADR 481 (789)
Q Consensus 443 ----------~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 481 (789)
...|.|+|||+|.++ .|++||.+.++|..+..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s-----~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFS-----PDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccC-----CCCcceEEEEEhhhccccc
Confidence 358999999999986 8999999999999987654
No 215
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.14 E-value=2.8e-10 Score=99.31 Aligned_cols=91 Identities=32% Similarity=0.525 Sum_probs=79.1
Q ss_pred EEEEEEEccCCCCCccCCCCCCcCcEEEEEECCE---EEeeccccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCCCC
Q 003882 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLK---WVRTRTLVDNFNPKWNEQYTWEVYDP-CTVITLGVFDNCHLGG 458 (789)
Q Consensus 383 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~---~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~~~~ 458 (789)
+.|.|++|++|..... .+..+|||++++++. ..+|+++.++.||.|||.|.|.+..+ ...|.|+|||.+..+
T Consensus 2 l~i~i~~~~~l~~~~~---~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~- 77 (101)
T smart00239 2 LTVKIISARNLPKKDK---KGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFG- 77 (101)
T ss_pred eEEEEEEeeCCCCCCC---CCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCcc-
Confidence 6789999999987532 257899999999764 79999999999999999999999987 889999999988753
Q ss_pred CCCCCCCccEEEEEECcccccCc
Q 003882 459 SGTKPDSRIGKVRIRLSTLEADR 481 (789)
Q Consensus 459 ~~~~~d~~lG~~~i~l~~l~~~~ 481 (789)
.+.+||.+.+++.++..+.
T Consensus 78 ----~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 78 ----RDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred ----CCceeEEEEEEHHHcccCc
Confidence 6899999999999987654
No 216
>PLN02270 phospholipase D alpha
Probab=99.13 E-value=5.5e-10 Score=126.93 Aligned_cols=125 Identities=19% Similarity=0.322 Sum_probs=105.3
Q ss_pred ccCceeEEEEEEEEeeCCCCCC------------------CCCCCCcEEEEEECCe-eeeeccccCC-CCCeeccEEEEE
Q 003882 49 LVEQMFYLYVRVEKARDLPTNP------------------VSGSCDPYVEVKLGNY-KGKTRHFEKK-SNPEWKQVFAFS 108 (789)
Q Consensus 49 ~~~~~~~L~V~v~~a~~L~~~~------------------~~g~~dpyv~v~~~~~-~~~T~~~~~t-~nP~wne~f~f~ 108 (789)
+.+ |.|.|+|.+|++|++.+ ..+++||||.|.+++. ..||+++.+. .||.|||+|++.
T Consensus 5 llh--g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~ 82 (808)
T PLN02270 5 LLH--GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIY 82 (808)
T ss_pred eee--cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEe
Confidence 445 88999999999998631 1357899999999985 5799999885 599999999999
Q ss_pred ccCCCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCc-cceEEEEEEEEeec
Q 003882 109 KEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRK-VKGEVMLAVWIGTQ 182 (789)
Q Consensus 109 ~~~~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~-~~G~l~l~~~~~~~ 182 (789)
+.... ..|.|.|+|.+.++ ..+||.+.|++.+|..+...+ .||++.+..++.. ....|++++.|.+.
T Consensus 83 ~ah~~-~~v~f~vkd~~~~g-~~~ig~~~~p~~~~~~g~~i~-----~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 83 CAHMA-SNIIFTVKDDNPIG-ATLIGRAYIPVEEILDGEEVD-----RWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred eccCc-ceEEEEEecCCccC-ceEEEEEEEEHHHhcCCCccc-----cEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 98875 89999999999986 569999999999999987766 9999999887642 33478899988764
No 217
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.11 E-value=1.8e-11 Score=132.61 Aligned_cols=126 Identities=29% Similarity=0.558 Sum_probs=109.1
Q ss_pred ceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-------------e------------------eeeeccccCCCCCe
Q 003882 52 QMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-------------Y------------------KGKTRHFEKKSNPE 100 (789)
Q Consensus 52 ~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-------------~------------------~~~T~~~~~t~nP~ 100 (789)
|..-|.|.+.+|+||.++|.+|-+|||+...+.+ + .+-|.++++|+||.
T Consensus 112 P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPk 191 (1103)
T KOG1328|consen 112 PSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPK 191 (1103)
T ss_pred CcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcc
Confidence 4467889999999999999999999999987743 0 12578899999999
Q ss_pred eccEEEEEccCCCCceEEEEEEeCCCC---------------------------------C---CCceeEEEEEEccccC
Q 003882 101 WKQVFAFSKEKIQSSVLEVFVRDREIV---------------------------------G---RDDYIGKVVFDMNEVP 144 (789)
Q Consensus 101 wne~f~f~~~~~~~~~l~v~V~d~~~~---------------------------------~---~d~~lG~~~i~l~~l~ 144 (789)
|+|.|.|.+++..++.+++.+||+|.- + .|||||.+.|+|+++.
T Consensus 192 W~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP 271 (1103)
T KOG1328|consen 192 WSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIP 271 (1103)
T ss_pred hhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCC
Confidence 999999999999999999999999861 1 3899999999999999
Q ss_pred CCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEeecC
Q 003882 145 TRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGTQA 183 (789)
Q Consensus 145 ~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~ 183 (789)
... .+ +||+|++++..+++.|.+++.+|+.+..
T Consensus 272 ~~G-ld-----~WFkLepRS~~S~VqG~~~LklwLsT~e 304 (1103)
T KOG1328|consen 272 PDG-LD-----QWFKLEPRSDKSKVQGQVKLKLWLSTKE 304 (1103)
T ss_pred cch-HH-----HHhccCcccccccccceEEEEEEEeeec
Confidence 864 34 8999999998889999999999998643
No 218
>PLN02223 phosphoinositide phospholipase C
Probab=99.07 E-value=1.3e-09 Score=119.07 Aligned_cols=119 Identities=21% Similarity=0.285 Sum_probs=89.6
Q ss_pred cEEEEEEEEccCCCCC--ccCCCCCCcCcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeCCC-ceEEEEEEe
Q 003882 381 GILEVGILSAQGLLPM--KTRDGRGTTDAYCVAKYGL-----KWVRTRTLVDNFNPKWNEQYTWEVYDPC-TVITLGVFD 452 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~--~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~~-~~l~v~v~d 452 (789)
..|.|+|+.+++++.. ++.+.....||||+|.+.| ...+|++..++.||.|||+|.|.+..|. ..|.|+|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 5899999999998621 1112234689999999843 3478877778999999999999998875 589999999
Q ss_pred CCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEE
Q 003882 453 NCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVR 508 (789)
Q Consensus 453 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 508 (789)
+|..+ .|+++|+..+|++.|..|- ++++|.+.++.... .-+|-+++.
T Consensus 489 ~D~~~-----~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~-~~~Ll~~f~ 535 (537)
T PLN02223 489 YEVST-----ADAFCGQTCLPVSELIEGI---RAVPLYDERGKACS-STMLLTRFK 535 (537)
T ss_pred cCCCC-----CCcEEEEEecchHHhcCCc---eeEeccCCCcCCCC-CceEEEEEE
Confidence 99865 7899999999999999884 67899765432222 234544443
No 219
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.04 E-value=1.5e-09 Score=121.19 Aligned_cols=118 Identities=19% Similarity=0.244 Sum_probs=96.6
Q ss_pred eEEEEEEEEeeCCCCC------CCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEE
Q 003882 54 FYLYVRVEKARDLPTN------PVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVR 122 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~------~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~ 122 (789)
..|.|+|+.+.+++.. +.....||||+|.+-+ .+++|++..++.||+|||+|.|.+.-++-..|+|.|+
T Consensus 469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~ 548 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVH 548 (598)
T ss_pred cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEE
Confidence 5799999999987421 2233579999999965 3568999999999999999999987777789999999
Q ss_pred eCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEE
Q 003882 123 DREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWI 179 (789)
Q Consensus 123 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 179 (789)
|+|..++|+|+|+..+|+..|..+- +.++|.+..|..-..-.|.+.+.+
T Consensus 549 d~d~~~~ddfiGQ~~lPv~~Lr~Gy--------R~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 549 EHDINEKDDFGGQTCLPVSEIRQGI--------HAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred ECCCCCCCCEEEEEEcchHHhhCcc--------ceEeccCCCcCCCCCCeeEEEEEe
Confidence 9999889999999999999999874 678999988764344566666654
No 220
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.02 E-value=3e-09 Score=118.60 Aligned_cols=118 Identities=19% Similarity=0.297 Sum_probs=95.5
Q ss_pred eEEEEEEEEeeCCC----C--CCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEE
Q 003882 54 FYLYVRVEKARDLP----T--NPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVR 122 (789)
Q Consensus 54 ~~L~V~v~~a~~L~----~--~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~ 122 (789)
..|.|+|+.|.++. . .+.....||||+|.+.+ .+++|+++.++.||+|||+|.|.+..++-..|+|.|+
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~ 531 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVH 531 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEE
Confidence 57999999998753 1 11234579999999965 3679999999999999999999987776789999999
Q ss_pred eCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEE
Q 003882 123 DREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWI 179 (789)
Q Consensus 123 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 179 (789)
|+|..+.++|+|++.+++..|..+- +.++|.+..|..-..-.|.+.+.+
T Consensus 532 d~D~~~~ddfigq~~lPv~~Lr~Gy--------R~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 532 EYDMSEKDDFGGQTCLPVWELSQGI--------RAFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred ECCCCCCCcEEEEEEcchhhhhCcc--------ceEEccCCCcCCCCCeeEEEEEEe
Confidence 9998888999999999999999874 678999888764344566666543
No 221
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=99.00 E-value=4.4e-10 Score=127.91 Aligned_cols=115 Identities=24% Similarity=0.301 Sum_probs=99.6
Q ss_pred cccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-----eeeeccccCCCCCeeccEEEEE---ccC
Q 003882 40 SERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNY-----KGKTRHFEKKSNPEWKQVFAFS---KEK 111 (789)
Q Consensus 40 ~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-----~~~T~~~~~t~nP~wne~f~f~---~~~ 111 (789)
..+++++|.. +.|+|.|..|++|+--..+..+||||++++.+. ++||+++++|.||.|||.+.+. .+.
T Consensus 1514 qV~LsIsY~~----~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~ 1589 (1639)
T KOG0905|consen 1514 QVKLSISYNN----GTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEI 1589 (1639)
T ss_pred eEEEEEEEcC----ceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhh
Confidence 5789999984 779999999999965554678999999999873 6799999999999999999887 345
Q ss_pred CCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccC
Q 003882 112 IQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDR 163 (789)
Q Consensus 112 ~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 163 (789)
+...+|++.||..+.+..+.+||.+.|+|.++...+... .||.|...
T Consensus 1590 l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~-----~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1590 LQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESV-----GWYNLGAC 1636 (1639)
T ss_pred hhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhc-----ceeecccc
Confidence 567899999999999999999999999999998876544 89999753
No 222
>PLN02952 phosphoinositide phospholipase C
Probab=98.99 E-value=4.5e-09 Score=117.60 Aligned_cols=120 Identities=23% Similarity=0.293 Sum_probs=92.3
Q ss_pred ccEEEEEEEEccCCCCCc---cCCCCCCcCcEEEEEEC-----CEEEeeccccCCCCCccccEEEEEEeCC-CceEEEEE
Q 003882 380 IGILEVGILSAQGLLPMK---TRDGRGTTDAYCVAKYG-----LKWVRTRTLVDNFNPKWNEQYTWEVYDP-CTVITLGV 450 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~---~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v 450 (789)
...|.|+|+.+++|+.-. ..+.....||||+|.+- ....+|+++.++.||.|||.|.|++..| -..+.|.|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 358999999999985321 11222345999999883 3568999999999999999999999876 46899999
Q ss_pred EeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEEe
Q 003882 451 FDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRFT 510 (789)
Q Consensus 451 ~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 510 (789)
+|+|..+ .++++|++.|||+.|..|- +|++|.+.. |.. -+...|-++|.
T Consensus 549 ~D~D~~~-----~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~--G~~-l~~a~Llv~f~ 597 (599)
T PLN02952 549 REYDMSE-----KDDFGGQTCLPVSELRPGI---RSVPLHDKK--GEK-LKNVRLLMRFI 597 (599)
T ss_pred EecCCCC-----CCCeEEEEEcchhHhcCCc---eeEeCcCCC--CCC-CCCEEEEEEEE
Confidence 9999865 7899999999999999885 589997553 332 24556655554
No 223
>PLN02228 Phosphoinositide phospholipase C
Probab=98.99 E-value=4.2e-09 Score=117.08 Aligned_cols=119 Identities=17% Similarity=0.227 Sum_probs=98.5
Q ss_pred eEEEEEEEEeeCCCC---C---CCCCCCCcEEEEEECC-----eeeeeccccCCCCCee-ccEEEEEccCCCCceEEEEE
Q 003882 54 FYLYVRVEKARDLPT---N---PVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEW-KQVFAFSKEKIQSSVLEVFV 121 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~---~---~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~w-ne~f~f~~~~~~~~~l~v~V 121 (789)
..|.|+|+.|.+|+. . +.....||||+|.+.+ .+++|+++.++.||+| ||+|.|.+..++-..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 469999999998731 1 1223479999999865 3579999988899999 99999998777678999999
Q ss_pred EeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEe
Q 003882 122 RDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIG 180 (789)
Q Consensus 122 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 180 (789)
+|+|..+.++|+|++.+++..|..+- +.++|.+..|..-....|.+.+.+.
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~GY--------R~VpL~~~~G~~l~~atLfv~~~~~ 561 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKSGV--------RAVRLHDRAGKAYKNTRLLVSFALD 561 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhCCe--------eEEEccCCCCCCCCCeEEEEEEEEc
Confidence 99998888999999999999998874 6789999888754567788888765
No 224
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.96 E-value=3.3e-09 Score=117.99 Aligned_cols=119 Identities=19% Similarity=0.325 Sum_probs=98.1
Q ss_pred eEEEEEEEEeeCCCCC-C---CCCCCCcEEEEEECC-----eeeeec-cccCCCCCeeccEEEEEccCCCCceEEEEEEe
Q 003882 54 FYLYVRVEKARDLPTN-P---VSGSCDPYVEVKLGN-----YKGKTR-HFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRD 123 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~-~---~~g~~dpyv~v~~~~-----~~~~T~-~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d 123 (789)
..|.|+|+.+.++... + .+..+||||.|.+-| ...+|+ +..++-||.|+|+|.|.+..++-.-|+|.|+|
T Consensus 616 ~tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d 695 (746)
T KOG0169|consen 616 KTLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHD 695 (746)
T ss_pred ceeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEe
Confidence 4799999999976543 2 134689999999976 256999 45556699999999999988877899999999
Q ss_pred CCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEe
Q 003882 124 REIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIG 180 (789)
Q Consensus 124 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 180 (789)
+|..++|+|+|+.++|+..|..+- +.++|.+..|+.-....|.+.+.+.
T Consensus 696 ~d~~~~ddF~GQ~tlP~~~L~~Gy--------RhVpL~~~~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 696 YDYIGKDDFIGQTTLPVSELRQGY--------RHVPLLSREGEALSSASLFVRIAIV 744 (746)
T ss_pred cCCCCcccccceeeccHHHhhCce--------eeeeecCCCCccccceeEEEEEEEe
Confidence 999999999999999999999874 5679999887755667777777654
No 225
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.95 E-value=3.2e-09 Score=89.73 Aligned_cols=85 Identities=22% Similarity=0.400 Sum_probs=73.0
Q ss_pred EEEEEEEeeCCCCCC---CCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCc
Q 003882 56 LYVRVEKARDLPTNP---VSGSCDPYVEVKLGNY-KGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDD 131 (789)
Q Consensus 56 L~V~v~~a~~L~~~~---~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~ 131 (789)
|.|+|..|+|+.-.+ ..+.+||||.+++++. +.||++ +.||.|||+|.|++.. ..++.+.|||+.. ...-
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk--~nEiel~VyDk~~-~~~~ 74 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK--NNEEEVIVYDKGG-DQPV 74 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC--CcEEEEEEEeCCC-Ceec
Confidence 679999999998776 5788999999999986 889987 5899999999999953 6899999999976 3566
Q ss_pred eeEEEEEEccccCCC
Q 003882 132 YIGKVVFDMNEVPTR 146 (789)
Q Consensus 132 ~lG~~~i~l~~l~~~ 146 (789)
.+|..-+.+++|...
T Consensus 75 Pi~llW~~~sdi~Ee 89 (109)
T cd08689 75 PVGLLWLRLSDIAEE 89 (109)
T ss_pred ceeeehhhHHHHHHH
Confidence 889999998888754
No 226
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.92 E-value=4.2e-09 Score=111.60 Aligned_cols=120 Identities=26% Similarity=0.450 Sum_probs=101.0
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccE-EEEEEeCC---CceEEEEEEeCCCC
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQ-YTWEVYDP---CTVITLGVFDNCHL 456 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~-~~f~v~~~---~~~l~v~v~d~~~~ 456 (789)
|.|.|+|..|++|+.||+. ....|.||.|++++..++|.+-.+++||.||.. |.|+|.+. ...|.|+++|+|..
T Consensus 3 gkl~vki~a~r~lpvmdka--sd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dty 80 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKA--SDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTY 80 (1169)
T ss_pred CcceeEEEeccCCcccccc--cccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccc
Confidence 7899999999999999864 457899999999999999999999999999965 89999863 56999999999998
Q ss_pred CCCCCCCCCccEEEEEECcccc----------cCceEeeeEeeeecCCCCCccceEEEEEEEEe
Q 003882 457 GGSGTKPDSRIGKVRIRLSTLE----------ADRIYTHSYPLLVLNPSGVKKMGELQLAVRFT 510 (789)
Q Consensus 457 ~~~~~~~d~~lG~~~i~l~~l~----------~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 510 (789)
+ .+|-||++.|++..|. .|.....|+|..+.- .| -+|+|.+-++..
T Consensus 81 s-----andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-hg--irgeinvivkvd 136 (1169)
T KOG1031|consen 81 S-----ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-HG--IRGEINVIVKVD 136 (1169)
T ss_pred c-----cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-cc--ccceeEEEEEEe
Confidence 7 8899999999999865 234678999997542 23 358888777643
No 227
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.91 E-value=1.1e-08 Score=114.34 Aligned_cols=121 Identities=17% Similarity=0.237 Sum_probs=91.0
Q ss_pred ccEEEEEEEEccCCCCCcc---CCCCCCcCcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeCCC-ceEEEEE
Q 003882 380 IGILEVGILSAQGLLPMKT---RDGRGTTDAYCVAKYGL-----KWVRTRTLVDNFNPKWNEQYTWEVYDPC-TVITLGV 450 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~---~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~~-~~l~v~v 450 (789)
...|.|+|+.+++++.... .+.....||||+|.+-| ...+|+++.++.||.|||+|.|++.-|. ..|.|.|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 3589999999999753211 12233579999998832 3478998889999999999999998874 7999999
Q ss_pred EeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEE
Q 003882 451 FDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRF 509 (789)
Q Consensus 451 ~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 509 (789)
+|+|..+ .|+++|+..||++.|..|- +.++|.+..+.... .-+|-+++.|
T Consensus 548 ~d~d~~~-----~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l~-~~~Ll~~f~~ 597 (598)
T PLN02230 548 HEHDINE-----KDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKYS-STRLLMRFEF 597 (598)
T ss_pred EECCCCC-----CCCEEEEEEcchHHhhCcc---ceEeccCCCcCCCC-CCeeEEEEEe
Confidence 9999865 8999999999999999873 56788765332222 2455555443
No 228
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.90 E-value=1.7e-08 Score=112.70 Aligned_cols=121 Identities=22% Similarity=0.279 Sum_probs=90.6
Q ss_pred ccEEEEEEEEccCCCC--Cc-cCCCCCCcCcEEEEEEC-----CEEEeeccccCCCCCccccEEEEEEeCCC-ceEEEEE
Q 003882 380 IGILEVGILSAQGLLP--MK-TRDGRGTTDAYCVAKYG-----LKWVRTRTLVDNFNPKWNEQYTWEVYDPC-TVITLGV 450 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~--~~-~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~wne~~~f~v~~~~-~~l~v~v 450 (789)
...|+|+|+.+++++. .+ ..+.....||||+|.+. ....||+++.++.||.|||.|.|.+..|. ..|.|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 3589999999998531 11 11223457999999983 34589999999999999999999998774 7999999
Q ss_pred EeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEE
Q 003882 451 FDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRF 509 (789)
Q Consensus 451 ~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 509 (789)
+|+|..+ .+++||+..||++.|..|- +.++|.+..+.... .-++-+.+.|
T Consensus 531 ~d~D~~~-----~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g~~l~-~a~Lfv~~~~ 580 (581)
T PLN02222 531 HEYDMSE-----KDDFGGQTCLPVWELSQGI---RAFPLHSRKGEKYK-SVKLLVKVEF 580 (581)
T ss_pred EECCCCC-----CCcEEEEEEcchhhhhCcc---ceEEccCCCcCCCC-CeeEEEEEEe
Confidence 9998765 7899999999999999873 56788765432222 2355554443
No 229
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.89 E-value=6.4e-09 Score=87.92 Aligned_cols=87 Identities=22% Similarity=0.292 Sum_probs=72.6
Q ss_pred EEEEEEEccCCCCCccCCCCCCcCcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCC
Q 003882 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLK-WVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGSGT 461 (789)
Q Consensus 383 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~~ 461 (789)
|.|+|..|+|+.-.......+.+||||.|++++. ++||++. -||.|||.|.|+| +....+.|.|||...
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~s---rnd~WnE~F~i~V-dk~nEiel~VyDk~~------ 70 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKPS---RNDRWNEDFEIPV-EKNNEEEVIVYDKGG------ 70 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccCC---CCCcccceEEEEe-cCCcEEEEEEEeCCC------
Confidence 5788999999987653224578899999999886 8999984 7999999999999 568899999999754
Q ss_pred CCCCccEEEEEECccccc
Q 003882 462 KPDSRIGKVRIRLSTLEA 479 (789)
Q Consensus 462 ~~d~~lG~~~i~l~~l~~ 479 (789)
...-.||-..|.+++|..
T Consensus 71 ~~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 71 DQPVPVGLLWLRLSDIAE 88 (109)
T ss_pred CeecceeeehhhHHHHHH
Confidence 256789999999999863
No 230
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.89 E-value=7.1e-10 Score=120.43 Aligned_cols=103 Identities=24% Similarity=0.395 Sum_probs=91.1
Q ss_pred ccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-------eeeeccccCCCCCeeccEEEEEccCC-
Q 003882 41 ERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNY-------KGKTRHFEKKSNPEWKQVFAFSKEKI- 112 (789)
Q Consensus 41 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-------~~~T~~~~~t~nP~wne~f~f~~~~~- 112 (789)
..+...|...+ ..|.|.|+.|+++.+-|.+|.+||||+|.+++. .++|+|+.+|+||+|+|+|+|.+...
T Consensus 936 lsvr~~y~~n~--q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~ 1013 (1103)
T KOG1328|consen 936 LSVRAYYNGNA--QTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEP 1013 (1103)
T ss_pred eEEEEEeeccc--cchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccc
Confidence 34566777777 789999999999999999999999999999983 46999999999999999999998432
Q ss_pred ---CCceEEEEEEeCCCCCCCceeEEEEEEccccCC
Q 003882 113 ---QSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPT 145 (789)
Q Consensus 113 ---~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~ 145 (789)
+...|.|+|.|+|-++.+||-|++.+.|.++..
T Consensus 1014 c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1014 CSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred cccccceEEEEeeccceecccccchHHHHhhCCCCC
Confidence 367899999999999999999999999988774
No 231
>PLN02228 Phosphoinositide phospholipase C
Probab=98.88 E-value=2.2e-08 Score=111.52 Aligned_cols=124 Identities=19% Similarity=0.208 Sum_probs=94.5
Q ss_pred ccEEEEEEEEccCCCC---CccCCCCCCcCcEEEEEEC-----CEEEeeccccCCCCCcc-ccEEEEEEeCCC-ceEEEE
Q 003882 380 IGILEVGILSAQGLLP---MKTRDGRGTTDAYCVAKYG-----LKWVRTRTLVDNFNPKW-NEQYTWEVYDPC-TVITLG 449 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~---~~~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w-ne~~~f~v~~~~-~~l~v~ 449 (789)
...|+|+|+.+++|+. .+..+.....||||+|.+. ...+||+++.++.||.| ||.|.|.+..|. ..|.|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 3589999999999742 1111223347999999883 24589999999999999 999999998874 689999
Q ss_pred EEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEEeec
Q 003882 450 VFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRFTCL 512 (789)
Q Consensus 450 v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~ 512 (789)
|+|+|..+ .|++||++.||++.|..|- +.++|.+..+... ...+|-+.+.+.+.
T Consensus 510 V~D~d~~~-----~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l-~~atLfv~~~~~~~ 563 (567)
T PLN02228 510 VQDYDNDT-----QNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAY-KNTRLLVSFALDPP 563 (567)
T ss_pred EEeCCCCC-----CCCEEEEEEcchhHhhCCe---eEEEccCCCCCCC-CCeEEEEEEEEcCc
Confidence 99998765 7899999999999998773 5678876543222 24678888777654
No 232
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.85 E-value=4.4e-08 Score=106.20 Aligned_cols=200 Identities=14% Similarity=0.192 Sum_probs=142.4
Q ss_pred CCCCCCCCCcEEEEEEC-------------------CeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCC--
Q 003882 68 TNPVSGSCDPYVEVKLG-------------------NYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREI-- 126 (789)
Q Consensus 68 ~~~~~g~~dpyv~v~~~-------------------~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~-- 126 (789)
..|..++.||.|.+... .+..+|.++.+.+||.|-+.|.....-...+.|++.++|.+.
T Consensus 4 ~~d~~~~~~~~c~~~~~~s~~~~~~~~~l~~~~~~~~e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~ 83 (529)
T KOG1327|consen 4 AYDIFSKSDPICKLFYLTSGGAWLETLELTKEDDVWEEVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRT 83 (529)
T ss_pred ccccccccCceeeeeccCCCccccccccccccccccccccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCcc
Confidence 33445566777766552 124489999999999999999988766667999999999875
Q ss_pred --CCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEeecCCCcCCccCCCCCcccCCCccc
Q 003882 127 --VGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGTQADEAFPEAWHSDAATVEGEGVF 204 (789)
Q Consensus 127 --~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 204 (789)
+...+|+|++...+..+....... .+|..+.+.....|+|.+.+.-... +
T Consensus 84 ~~l~~~dflg~~~c~l~~ivs~~~~~-------~~l~~~~~~~~~~g~iti~aee~~~-----------~---------- 135 (529)
T KOG1327|consen 84 PDLSSADFLGTAECTLSQIVSSSGLT-------GPLLLKPGKNAGSGTITISAEEDES-----------D---------- 135 (529)
T ss_pred CCcchhcccceeeeehhhhhhhhhhh-------hhhhcccCccCCcccEEEEeecccc-----------c----------
Confidence 346789999999999998764332 2233332233446777666521100 0
Q ss_pred cccccccccCccEEEEEEEEEeecCCCCCCCCCCCeEEEEEEC--C----eEEeeecccCCCCCCccCceeEEEe----e
Q 003882 205 NIRSKVYVSPKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVG--N----QVLKTKLCPTRTTNPLWNEDLIFVA----A 274 (789)
Q Consensus 205 ~~~~~~~~~~~~~~L~V~v~~ar~L~~~~~~~~~dpyv~v~l~--~----~~~kT~~~~~~t~nP~wne~f~f~~----~ 274 (789)
.....-..+|++|..++..+++|||..++-. . ..++|.+.++ +++|.|.... ... .
T Consensus 136 ------------~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n-~l~p~w~~~~-i~~~~l~~ 201 (529)
T KOG1327|consen 136 ------------NDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKN-TLNPQWAPFS-ISLQSLCS 201 (529)
T ss_pred ------------CceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceecc-CCCCcccccc-cchhhhcc
Confidence 0122334458999999999999999988653 2 4688999987 9999998742 221 1
Q ss_pred CCCCCeEEEEEEEccCCCCCCceEEEEEecccccc
Q 003882 275 EPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIER 309 (789)
Q Consensus 275 ~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~ 309 (789)
......+.+.++|++..+++++||.+..++.++..
T Consensus 202 ~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 202 KDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred cCCCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence 22356788999999998999999999999998863
No 233
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.84 E-value=5.9e-09 Score=110.50 Aligned_cols=126 Identities=28% Similarity=0.455 Sum_probs=105.4
Q ss_pred eEEEEEEEEeeCCCCCCC-CCCCCcEEEEEECCeeeeeccccCCCCCeec-cEEEEEcc--CCCCceEEEEEEeCCCCCC
Q 003882 54 FYLYVRVEKARDLPTNPV-SGSCDPYVEVKLGNYKGKTRHFEKKSNPEWK-QVFAFSKE--KIQSSVLEVFVRDREIVGR 129 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~-~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wn-e~f~f~~~--~~~~~~l~v~V~d~~~~~~ 129 (789)
|.|.|+|+.|++|+.+|. +...|.||++++++..+||.+..+++||.|| +.|.|.+. ++++..|++.+.|+|..+.
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysa 82 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSA 82 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccccc
Confidence 678899999999999986 4457999999999999999999999999998 56888884 5678999999999999999
Q ss_pred CceeEEEEEEccccCCCCCC-----CCCCCCeeEEcccCCCCCccceEEEEEEEEee
Q 003882 130 DDYIGKVVFDMNEVPTRVPP-----DSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGT 181 (789)
Q Consensus 130 d~~lG~~~i~l~~l~~~~~~-----~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 181 (789)
+|-||.+.|++..|...... .......|+++.+.-- ..+|+|.+-+.+.-
T Consensus 83 ndaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtih--girgeinvivkvdl 137 (1169)
T KOG1031|consen 83 NDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIH--GIRGEINVIVKVDL 137 (1169)
T ss_pred ccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecc--cccceeEEEEEEee
Confidence 99999999999988765322 1355679999987642 36889888776643
No 234
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.84 E-value=1.9e-08 Score=112.04 Aligned_cols=120 Identities=23% Similarity=0.379 Sum_probs=92.9
Q ss_pred EEEEEEEEccCCCCCccCC-CCCCcCcEEEEEECC-----EEEeecccc-CCCCCccccEEEEEEeCCC-ceEEEEEEeC
Q 003882 382 ILEVGILSAQGLLPMKTRD-GRGTTDAYCVAKYGL-----KWVRTRTLV-DNFNPKWNEQYTWEVYDPC-TVITLGVFDN 453 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~-~~~~~dpyv~v~~~~-----~~~~T~~~~-~t~~P~wne~~~f~v~~~~-~~l~v~v~d~ 453 (789)
.|.|+|+.++|+++..... .+..+||||.|++.| ...+|+++. ++.||.|+|+|+|++..|. +-|.|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 7999999999877643222 235689999999854 348999555 6889999999999999874 6899999999
Q ss_pred CCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEEe
Q 003882 454 CHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRFT 510 (789)
Q Consensus 454 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 510 (789)
|..+ +|+|+|+..||++.|..| -+.+||.+..+... ...+|-+.+.+.
T Consensus 697 d~~~-----~ddF~GQ~tlP~~~L~~G---yRhVpL~~~~G~~~-~~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 DYIG-----KDDFIGQTTLPVSELRQG---YRHVPLLSREGEAL-SSASLFVRIAIV 744 (746)
T ss_pred CCCC-----cccccceeeccHHHhhCc---eeeeeecCCCCccc-cceeEEEEEEEe
Confidence 9986 899999999999999877 35678876532211 246676766654
No 235
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.81 E-value=2e-08 Score=110.64 Aligned_cols=119 Identities=17% Similarity=0.284 Sum_probs=97.1
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC------eeeeeccccCCCCCeec-cEEEEEccCCCCceEEEEEEeCCC
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN------YKGKTRHFEKKSNPEWK-QVFAFSKEKIQSSVLEVFVRDREI 126 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~------~~~~T~~~~~t~nP~wn-e~f~f~~~~~~~~~l~v~V~d~~~ 126 (789)
-.|.|.|+.|+.|+... .|.+.|+|+|.+-+ ..++|.++.+++||+|| |+|.|.+.+++-..|+|.|+|.|.
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 56999999999999554 45678999999976 24577788889999999 999999999988999999999999
Q ss_pred CCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEee
Q 003882 127 VGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGT 181 (789)
Q Consensus 127 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 181 (789)
++...|||++.+|+..+..+- .-++|.+.-.+.-....|.+.+.+.+
T Consensus 1144 fs~~~FiaqA~yPv~~ik~Gf--------RsVpLkN~ySEdlELaSLLv~i~m~~ 1190 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGF--------RSVPLKNGYSEDLELASLLVFIEMRP 1190 (1267)
T ss_pred cCCcceeeeeecchhhhhccc--------eeeecccCchhhhhhhhheeeeEecc
Confidence 998899999999999999874 45677776544334556666666543
No 236
>PLN02352 phospholipase D epsilon
Probab=98.73 E-value=6.9e-08 Score=109.92 Aligned_cols=121 Identities=21% Similarity=0.272 Sum_probs=92.8
Q ss_pred ccEEEEEEEEccCCCCCccC-C-CCCCcCcEEEEEECCEE-EeeccccCCCCCccccEEEEEEeCCC-ceEEEEEEeCCC
Q 003882 380 IGILEVGILSAQGLLPMKTR-D-GRGTTDAYCVAKYGLKW-VRTRTLVDNFNPKWNEQYTWEVYDPC-TVITLGVFDNCH 455 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~-~-~~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~wne~~~f~v~~~~-~~l~v~v~d~~~ 455 (789)
-|.|.++|++|+-+...-.. . -+...||||.|.+++.+ .|| .+..||.|||.|.+++.++. ..++|+|.|
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~--- 82 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT--- 82 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec---
Confidence 38999999999833221000 0 01223999999998764 799 55669999999999999987 789999999
Q ss_pred CCCCCCCCCCccEEEEEECcccccCce-EeeeEeeeecCCCCCccceEEEEEEEEeecCh
Q 003882 456 LGGSGTKPDSRIGKVRIRLSTLEADRI-YTHSYPLLVLNPSGVKKMGELQLAVRFTCLSL 514 (789)
Q Consensus 456 ~~~~~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~~~ 514 (789)
...+||++.||+.++..|.. .+.|+++.+.+.+.... .+|+++++|.+...
T Consensus 83 -------~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~ 134 (758)
T PLN02352 83 -------KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPE-LKLRFMLWFRPAEL 134 (758)
T ss_pred -------CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCC-CEEEEEEEEEEhhh
Confidence 24599999999999999866 89999998765433322 59999999988643
No 237
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.66 E-value=9.9e-08 Score=105.30 Aligned_cols=99 Identities=21% Similarity=0.354 Sum_probs=81.4
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEEC-----CEEE-eeccccCCCCCccc-cEEEEEEeCC-CceEEEEEEe
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG-----LKWV-RTRTLVDNFNPKWN-EQYTWEVYDP-CTVITLGVFD 452 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~-----~~~~-~T~~~~~t~~P~wn-e~~~f~v~~~-~~~l~v~v~d 452 (789)
-.|.|.|+.|+.|+. .++|.+.|||.|++- ..++ +|.++.+.+||+|| |.|+|+|..| ...|.|.|+|
T Consensus 1065 ~~lsv~vigaRHL~k----~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~e 1140 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPK----LGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYE 1140 (1267)
T ss_pred eEEEEEEeecccccc----CCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEec
Confidence 489999999999984 456778899999872 3344 44455679999999 9999999998 5799999999
Q ss_pred CCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeee
Q 003882 453 NCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLV 491 (789)
Q Consensus 453 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 491 (789)
+|.++ ...|||++..|+..+..|- +.+||.+
T Consensus 1141 eDmfs-----~~~FiaqA~yPv~~ik~Gf---RsVpLkN 1171 (1267)
T KOG1264|consen 1141 EDMFS-----DPNFLAQATYPVKAIKSGF---RSVPLKN 1171 (1267)
T ss_pred ccccC-----Ccceeeeeecchhhhhccc---eeeeccc
Confidence 99997 5669999999999998773 4567753
No 238
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.64 E-value=3.4e-07 Score=99.51 Aligned_cols=181 Identities=19% Similarity=0.184 Sum_probs=126.2
Q ss_pred eEEeeecccCCCCCCccCceeEEEeeCCCCCeEEEEEEEccC----CCCCCceEEEEEeccccccccCCCCCcceeEEcc
Q 003882 249 QVLKTKLCPTRTTNPLWNEDLIFVAAEPFEEQLVLTVENKVT----PAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLE 324 (789)
Q Consensus 249 ~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~d~----~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~ 324 (789)
+..+|.++.. ..||.|.+.|.........+.+.+.++|.+. ....+++|++...++++..... ...-+.++
T Consensus 41 e~~rte~i~~-~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~----~~~~l~~~ 115 (529)
T KOG1327|consen 41 EVGRTEVIRN-VLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSG----LTGPLLLK 115 (529)
T ss_pred cccceeeeec-cCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhh----hhhhhhcc
Confidence 3457888887 9999999999888777677899999998764 4567899999999998864321 11111122
Q ss_pred ccCcccchhcccccccccceEEEEEEEcCcccccCCcccccCCCCcccccccCCCccEEEEEEEEccCCCCCccCCCCCC
Q 003882 325 KFGFGALELDKRHELKFSSRIHLRVCLEGAYHVMDESTMYISDQRPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGT 404 (789)
Q Consensus 325 ~~~~~~~~g~~~~~~~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~ 404 (789)
.. .....|.|.+.+.-... + -......++|.+|...| ..++
T Consensus 116 ~~-----------~~~~~g~iti~aee~~~----~---------------------~~~~~~~~~~~~ld~kd---~f~k 156 (529)
T KOG1327|consen 116 PG-----------KNAGSGTITISAEEDES----D---------------------NDVVQFSFRAKNLDPKD---FFSK 156 (529)
T ss_pred cC-----------ccCCcccEEEEeecccc----c---------------------CceeeeeeeeeecCccc---cccc
Confidence 11 12235666665531100 0 02223345688898774 4589
Q ss_pred cCcEEEEEE---CC---EEEeeccccCCCCCccccEEEEEEe-----CCCceEEEEEEeCCCCCCCCCCCCCccEEEEEE
Q 003882 405 TDAYCVAKY---GL---KWVRTRTLVDNFNPKWNEQYTWEVY-----DPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIR 473 (789)
Q Consensus 405 ~dpyv~v~~---~~---~~~~T~~~~~t~~P~wne~~~f~v~-----~~~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~ 473 (789)
+|||..+.- ++ ..++|.+++++++|.|-+ |..+.. ++...+.+.+||++..+ ++++||++..+
T Consensus 157 sd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~-----~~~~ig~~~tt 230 (529)
T KOG1327|consen 157 SDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNG-----KHDLIGKFQTT 230 (529)
T ss_pred CCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCC-----CcCceeEeccc
Confidence 999999865 22 239999999999999986 444333 34578999999999865 78999999999
Q ss_pred Cccccc
Q 003882 474 LSTLEA 479 (789)
Q Consensus 474 l~~l~~ 479 (789)
++++..
T Consensus 231 ~~~~~~ 236 (529)
T KOG1327|consen 231 LSELQE 236 (529)
T ss_pred HHHhcc
Confidence 999863
No 239
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.61 E-value=4.7e-08 Score=85.00 Aligned_cols=107 Identities=25% Similarity=0.348 Sum_probs=81.8
Q ss_pred EEEEEEEccCCCCCccC------C----CCCCcCcEEEEEE----CCEEEeeccccCCCCCccccEEEEEEe--------
Q 003882 383 LEVGILSAQGLLPMKTR------D----GRGTTDAYCVAKY----GLKWVRTRTLVDNFNPKWNEQYTWEVY-------- 440 (789)
Q Consensus 383 l~v~v~~a~~L~~~~~~------~----~~~~~dpyv~v~~----~~~~~~T~~~~~t~~P~wne~~~f~v~-------- 440 (789)
+.|.|++|.||+.+-.. + ..-..++||++.+ +++..+|+++.++..|+||..++|++.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 46889999999875322 1 1224689999985 567899999999999999999999775
Q ss_pred CC--------CceEEEEEEeCCCCCCCC-----CCCCCccEEEEEECcccccC-ceEeeeEee
Q 003882 441 DP--------CTVITLGVFDNCHLGGSG-----TKPDSRIGKVRIRLSTLEAD-RIYTHSYPL 489 (789)
Q Consensus 441 ~~--------~~~l~v~v~d~~~~~~~~-----~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L 489 (789)
+. ...+.++||++..-+.++ ..+|-.||.+.||+.+|... ....+|||+
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 11 458999999987643221 34678999999999998754 467899985
No 240
>PLN02352 phospholipase D epsilon
Probab=98.56 E-value=5.6e-07 Score=102.66 Aligned_cols=121 Identities=14% Similarity=0.245 Sum_probs=94.1
Q ss_pred cccCceeEEEEEEEEeeCCCCC----C-CCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEccCCCCceEEEEE
Q 003882 48 DLVEQMFYLYVRVEKARDLPTN----P-VSGSCDPYVEVKLGNY-KGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFV 121 (789)
Q Consensus 48 ~~~~~~~~L~V~v~~a~~L~~~----~-~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V 121 (789)
.+.+ |.|.++|.+|+-+... + .+...||||.|.+++. ..|| .+..||.|||+|.+.+.......|.|.|
T Consensus 6 ~~lh--g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~v 80 (758)
T PLN02352 6 KFFH--GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITL 80 (758)
T ss_pred cccc--cceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEE
Confidence 4556 8899999999844321 1 1122399999999985 4688 5666999999999999887657899999
Q ss_pred EeCCCCCCCceeEEEEEEccccCCCCC-CCCCCCCeeEEcccCCCCCccceEEEEEEEEeecC
Q 003882 122 RDREIVGRDDYIGKVVFDMNEVPTRVP-PDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGTQA 183 (789)
Q Consensus 122 ~d~~~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~ 183 (789)
+| ...+||.+.|++.+|..+.. .+ .||++.+..++......|++++.|.+..
T Consensus 81 k~-----~~~~ig~~~~p~~~~~~g~~~~~-----~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 133 (758)
T PLN02352 81 KT-----KCSILGRFHIQAHQIVTEASFIN-----GFFPLIMENGKPNPELKLRFMLWFRPAE 133 (758)
T ss_pred ec-----CCeEEEEEEEEHHHhhCCCcccc-----eEEEcccCCCCCCCCCEEEEEEEEEEhh
Confidence 99 36799999999999998754 45 9999999887643225888999987643
No 241
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=98.30 E-value=0.00038 Score=73.45 Aligned_cols=244 Identities=18% Similarity=0.279 Sum_probs=158.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEcc-------CCCCceEEEEEEeCC-CC
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKE-------KIQSSVLEVFVRDRE-IV 127 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~-------~~~~~~l~v~V~d~~-~~ 127 (789)
+.|+|++|+|.+... ...-.+..+++++...|-.+..+..|.||..+.+.+. ..+...|++++|-.+ .-
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 689999999999763 3456888999999999999999999999999999863 234688999999988 44
Q ss_pred CCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCC-CccceEEEEEEEEeecCCCcCCccC--C----CCCcc---
Q 003882 128 GRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDD-RKVKGEVMLAVWIGTQADEAFPEAW--H----SDAAT--- 197 (789)
Q Consensus 128 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~~G~l~l~~~~~~~~d~~~~~~~--~----~~~~~--- 197 (789)
+..+.+|.+.++|..............+.||+|...+.+ .+.+-+|.+.+.+.+.......+.. . +....
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~~~~~~ 158 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPPRQGHVP 158 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccccccCCccccccccCCCcccCCCc
Confidence 678899999999999822222222355699999887332 2457889999888755432111000 0 00000
Q ss_pred -----cCC----------CccccccccccccCccEEEEEEEEEeecCCCCCC----C--CCCCeEEEEEECCeEEeeecc
Q 003882 198 -----VEG----------EGVFNIRSKVYVSPKLWYLRVNVIEAQDVEPLDK----S--QLPQAFVEAQVGNQVLKTKLC 256 (789)
Q Consensus 198 -----~~~----------~~~~~~~~~~~~~~~~~~L~V~v~~ar~L~~~~~----~--~~~dpyv~v~l~~~~~kT~~~ 256 (789)
..+ ++.-..... ........|.|++..|.+|...-. . +...-|....+-+....|..-
T Consensus 159 ~~~~~~~~~~l~~~l~~~eg~lQIGp~-~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~F 237 (340)
T PF12416_consen 159 PPNSLLSPATLIPVLLEDEGLLQIGPP-DLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEPF 237 (340)
T ss_pred ccccccCccceeEEEccCCceEeeCCc-hhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeeec
Confidence 000 000000000 012345568999999999876621 1 234566777777766777766
Q ss_pred cCCCCCCccC-ceeE-EEeeCC---------CCCeEEEEEEEccCCCCCCceEEEEEecccccc
Q 003882 257 PTRTTNPLWN-EDLI-FVAAEP---------FEEQLVLTVENKVTPAKDEPLGRLRLSLNVIER 309 (789)
Q Consensus 257 ~~~t~nP~wn-e~f~-f~~~~~---------~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~ 309 (789)
.. ..+|.+. |.-. +.+... ....|.|.++.. +..||.+.+++..+..
T Consensus 238 ~~-l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g-----~~~Lg~~~v~l~~Ll~ 295 (340)
T PF12416_consen 238 KS-LSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG-----NQSLGSTSVPLQPLLP 295 (340)
T ss_pred cc-cCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC-----CcEEEEEEEEhhhccC
Confidence 55 7777664 2222 443211 234566666653 6789999999999864
No 242
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.25 E-value=1.2e-06 Score=100.77 Aligned_cols=102 Identities=21% Similarity=0.265 Sum_probs=85.2
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEEC--C---EEEeeccccCCCCCccccEEEEEEeC----CCceEEEEEE
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG--L---KWVRTRTLVDNFNPKWNEQYTWEVYD----PCTVITLGVF 451 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~--~---~~~~T~~~~~t~~P~wne~~~f~v~~----~~~~l~v~v~ 451 (789)
|.|.|.|.-|+||+-. ..+..+||||+.++- . .+.||+++++|.||.|||..++.-.. ....|.++||
T Consensus 1524 ~~LtImV~H~K~L~~L---qdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVl 1600 (1639)
T KOG0905|consen 1524 GTLTIMVMHAKGLALL---QDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVL 1600 (1639)
T ss_pred ceEEEEhhhhcccccc---cCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeee
Confidence 6999999999999654 334579999999982 2 35899999999999999988776322 1468999999
Q ss_pred eCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeee
Q 003882 452 DNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490 (789)
Q Consensus 452 d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 490 (789)
..+.+. .+.++|.+.|+|.++...++...||+|.
T Consensus 1601 s~~~~~-----en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1601 SNGGLL-----ENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred ccccee-----eeeeeeeeecchhhcchhhhhcceeecc
Confidence 998875 7889999999999998888778999984
No 243
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.96 E-value=0.0039 Score=65.93 Aligned_cols=239 Identities=15% Similarity=0.188 Sum_probs=156.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCeEEEEEECCeEEeeecccCCCCCCccCceeEEEeeC-------CCCCeEEEEEEEcc-C
Q 003882 219 LRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTRTTNPLWNEDLIFVAAE-------PFEEQLVLTVENKV-T 290 (789)
Q Consensus 219 L~V~v~~ar~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~-------~~~~~l~i~V~d~d-~ 290 (789)
+.|.|++|++.+... ...-.|..++.++...|..+.. +..|.||..+.+.+.. .....|++++|..+ .
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~-~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~ 77 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPH-TESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS 77 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCC-CCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC
Confidence 678999999999763 3467899999999999998886 9999999999998743 24557999998887 4
Q ss_pred CCCCCceEEEEEecccc-ccccCCCCCcceeEEccccCcccchhcccccccccceEEEEEEEcCccccc----C-----C
Q 003882 291 PAKDEPLGRLRLSLNVI-ERRLDHRPVHSKWFNLEKFGFGALELDKRHELKFSSRIHLRVCLEGAYHVM----D-----E 360 (789)
Q Consensus 291 ~~~d~~iG~~~i~l~~l-~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~~~~~~~~----d-----~ 360 (789)
.+..+.||.+.++|..+ ...........+||+|.... .+-.+.+-+|.+.++++...... + +
T Consensus 78 ~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~--------~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~ 149 (340)
T PF12416_consen 78 TGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSS--------SKYKKHKPELLLSLSIEDDSKPQTPDFESFKAKP 149 (340)
T ss_pred CCcceeccEEEEEccccccccccccccCCCeeEccccc--------cccccCCccEEEEEEEeccccccCCccccccccC
Confidence 67788999999999887 11112334678999998762 11122345677777765433210 0 0
Q ss_pred cccccC-------CCCcc--cccc------c--CC-----CccEEEEEEEEccCCCCCccC---CCCCCcCcEEEEEECC
Q 003882 361 STMYIS-------DQRPT--ARQL------W--KQ-----PIGILEVGILSAQGLLPMKTR---DGRGTTDAYCVAKYGL 415 (789)
Q Consensus 361 ~~~~~~-------d~~~~--~~~~------~--~~-----~~g~l~v~v~~a~~L~~~~~~---~~~~~~dpyv~v~~~~ 415 (789)
.+.... ...+. .+.+ + .+ ..-.|.|+|-.|++|..+... +..+....|...++=|
T Consensus 150 ~p~~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllG 229 (340)
T PF12416_consen 150 APPRQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLG 229 (340)
T ss_pred CCcccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecC
Confidence 011111 00010 0000 0 11 234788899999998766211 1112355666677755
Q ss_pred EEEeeccccCCCCCcc--ccEEEEEEeCC----------CceEEEEEEeCCCCCCCCCCCCCccEEEEEECccccc
Q 003882 416 KWVRTRTLVDNFNPKW--NEQYTWEVYDP----------CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEA 479 (789)
Q Consensus 416 ~~~~T~~~~~t~~P~w--ne~~~f~v~~~----------~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~ 479 (789)
....|..-+...+|.| ++...+.+... ...|.|.++. .+..||.+.|++..+..
T Consensus 230 n~Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~----------g~~~Lg~~~v~l~~Ll~ 295 (340)
T PF12416_consen 230 NDVTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCC----------GNQSLGSTSVPLQPLLP 295 (340)
T ss_pred cEeEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEee----------CCcEEEEEEEEhhhccC
Confidence 5677777777778877 44443666532 3578888888 35579999999999864
No 244
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=7.6e-06 Score=84.08 Aligned_cols=114 Identities=25% Similarity=0.323 Sum_probs=92.2
Q ss_pred ecccCceeEEEEEEEEeeCCCCCCCC-CCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccCCCCceEEEE
Q 003882 47 YDLVEQMFYLYVRVEKARDLPTNPVS-GSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVF 120 (789)
Q Consensus 47 ~~~~~~~~~L~V~v~~a~~L~~~~~~-g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~ 120 (789)
.++....|.|+|.|++|++|..+... ..++|||+|++.+ .+.+|+...+|.+|-+-+...|.-..+ ...|.+.
T Consensus 262 ~~~~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~-~k~Lq~t 340 (405)
T KOG2060|consen 262 IALMDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPP-GKYLQGT 340 (405)
T ss_pred hhhhcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCC-ccEEEEE
Confidence 34445668999999999999876432 2689999999975 256999999999999999988887555 6899999
Q ss_pred EE-eCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCC
Q 003882 121 VR-DREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRD 165 (789)
Q Consensus 121 V~-d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 165 (789)
|| |+.++..+.|+|.+.+-+.+|..... ....||+|-....
T Consensus 341 v~gdygRmd~k~fmg~aqi~l~eL~ls~~----~~igwyKlfgsss 382 (405)
T KOG2060|consen 341 VWGDYGRMDHKSFMGVAQIMLDELNLSSS----PVIGWYKLFGSSS 382 (405)
T ss_pred EeccccccchHHHhhHHHHHhhhhccccc----cceeeeeccCCcc
Confidence 99 67777788999999999999998751 2238999987653
No 245
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.90 E-value=1.7e-05 Score=69.39 Aligned_cols=101 Identities=21% Similarity=0.356 Sum_probs=75.7
Q ss_pred EEEEEEEeeCCCCCC-------------CCCCCCcEEEEEEC----CeeeeeccccCCCCCeeccEEEEEcc--------
Q 003882 56 LYVRVEKARDLPTNP-------------VSGSCDPYVEVKLG----NYKGKTRHFEKKSNPEWKQVFAFSKE-------- 110 (789)
Q Consensus 56 L~V~v~~a~~L~~~~-------------~~g~~dpyv~v~~~----~~~~~T~~~~~t~nP~wne~f~f~~~-------- 110 (789)
|.|.|++|.+|.+.- ..-.-|+||++.+. ++..+|+++.++--|+|+..+.|...
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 467888888886421 11235899999853 35789999999999999999999853
Q ss_pred -------CCCCceEEEEEEeCCCC----------CCCceeEEEEEEccccCCCCCCCCCCCCeeEEc
Q 003882 111 -------KIQSSVLEVFVRDREIV----------GRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRL 160 (789)
Q Consensus 111 -------~~~~~~l~v~V~d~~~~----------~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 160 (789)
-++...+.++||....- .+|-.||.+.||+.+|..... -...||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rs----GitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRS----GITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhccc----CccccccC
Confidence 12467899999987652 256689999999999987632 23489975
No 246
>PLN02964 phosphatidylserine decarboxylase
Probab=97.88 E-value=2e-05 Score=89.61 Aligned_cols=95 Identities=14% Similarity=0.176 Sum_probs=79.4
Q ss_pred eeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEE-EEEECCeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEE
Q 003882 44 TSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYV-EVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVR 122 (789)
Q Consensus 44 ~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv-~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~ 122 (789)
.++-+.-. |...++|++|+ ++. .|||. .+++|.+.+||.+.++|.||+||+...|.+........++.||
T Consensus 46 ~~~~~~~~--~~~~~~~~~~~----~~~---~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 116 (644)
T PLN02964 46 AVSAEDFS--GIALLTLVGAE----MKF---KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVF 116 (644)
T ss_pred ceeccccc--CeEEEEeehhh----hcc---CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEE
Confidence 34445555 99999999997 332 58875 5667789999999999999999999999997666667899999
Q ss_pred eCCCCCCCceeEEEEEEccccCCCC
Q 003882 123 DREIVGRDDYIGKVVFDMNEVPTRV 147 (789)
Q Consensus 123 d~~~~~~d~~lG~~~i~l~~l~~~~ 147 (789)
|.+.+++++.+|.+++++.++...+
T Consensus 117 ~~~~~s~n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 117 ETNRLSKNTLVGYCELDLFDFVTQE 141 (644)
T ss_pred ecCCCCHHHhhhheeecHhhccHHH
Confidence 9999999999999999998887664
No 247
>PLN02964 phosphatidylserine decarboxylase
Probab=97.76 E-value=3.6e-05 Score=87.67 Aligned_cols=87 Identities=21% Similarity=0.339 Sum_probs=73.8
Q ss_pred ccEEEEEEEEccCCCCCccCCCCCCcCcEEEE-EECCEEEeeccccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCCC
Q 003882 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVA-KYGLKWVRTRTLVDNFNPKWNEQYTWEVYDP-CTVITLGVFDNCHLG 457 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v-~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~~~ 457 (789)
.|.+.+++++|+ |+ ..|+|+.+ .+|.+++||.+.++|.||+||+...|.|... .....|.|||.+.++
T Consensus 53 ~~~~~~~~~~~~----~~------~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 122 (644)
T PLN02964 53 SGIALLTLVGAE----MK------FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLS 122 (644)
T ss_pred cCeEEEEeehhh----hc------cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCC
Confidence 489999999987 32 34888766 7799999999999999999999999988853 334699999999987
Q ss_pred CCCCCCCCccEEEEEECcccccCc
Q 003882 458 GSGTKPDSRIGKVRIRLSTLEADR 481 (789)
Q Consensus 458 ~~~~~~d~~lG~~~i~l~~l~~~~ 481 (789)
.++++|.|.++|.++...+
T Consensus 123 -----~n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 123 -----KNTLVGYCELDLFDFVTQE 141 (644)
T ss_pred -----HHHhhhheeecHhhccHHH
Confidence 8999999999999887654
No 248
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.68 E-value=5.1e-05 Score=61.45 Aligned_cols=89 Identities=19% Similarity=0.273 Sum_probs=68.2
Q ss_pred EEEEEEeeCCCCCCC-CCCCCcEEEEEE--C-CeeeeeccccCCCCCeeccEEEEEcc--CCCCceEEEEEEeCCCCCCC
Q 003882 57 YVRVEKARDLPTNPV-SGSCDPYVEVKL--G-NYKGKTRHFEKKSNPEWKQVFAFSKE--KIQSSVLEVFVRDREIVGRD 130 (789)
Q Consensus 57 ~V~v~~a~~L~~~~~-~g~~dpyv~v~~--~-~~~~~T~~~~~t~nP~wne~f~f~~~--~~~~~~l~v~V~d~~~~~~d 130 (789)
-|+|++++||.-... +..+.-|++--+ . +..+||++.++..||+|.|+|.|.+. .++.-.|.|.|+.. ..+.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~--~~RK 79 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQ--TPRK 79 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeecc--CCcc
Confidence 378999999976542 333445666433 3 35789999999999999999999974 55677888999984 4478
Q ss_pred ceeEEEEEEccccCCCC
Q 003882 131 DYIGKVVFDMNEVPTRV 147 (789)
Q Consensus 131 ~~lG~~~i~l~~l~~~~ 147 (789)
+.||.+.+.+.++-.++
T Consensus 80 e~iG~~sL~l~s~geeE 96 (103)
T cd08684 80 RTIGECSLSLRTLSTQE 96 (103)
T ss_pred ceeeEEEeecccCCHHH
Confidence 99999999999887664
No 249
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.48 E-value=0.00014 Score=59.04 Aligned_cols=95 Identities=14% Similarity=0.298 Sum_probs=69.1
Q ss_pred EEEEEEeecCCCCC-CCCCCCeEEEEEEC---CeEEeeecccCCCCCCccCceeEEEeeC--CCCCeEEEEEEEccCCCC
Q 003882 220 RVNVIEAQDVEPLD-KSQLPQAFVEAQVG---NQVLKTKLCPTRTTNPLWNEDLIFVAAE--PFEEQLVLTVENKVTPAK 293 (789)
Q Consensus 220 ~V~v~~ar~L~~~~-~~~~~dpyv~v~l~---~~~~kT~~~~~~t~nP~wne~f~f~~~~--~~~~~l~i~V~d~d~~~~ 293 (789)
-|+++.|+++.-.. ....+..|++-.+. ....||+... +..||.|+|+|.|.+.. ..+-.|.|.|+. ...+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rr-gs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~R 78 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKE-GSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPR 78 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhc-CCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCc
Confidence 47889999986433 34556678876654 2456777766 49999999999998754 345578888887 5678
Q ss_pred CCceEEEEEeccccccccCCCCCcceeEE
Q 003882 294 DEPLGRLRLSLNVIERRLDHRPVHSKWFN 322 (789)
Q Consensus 294 d~~iG~~~i~l~~l~~~~~~~~~~~~w~~ 322 (789)
.+.||.|.+.+.++.++ ...+|.+
T Consensus 79 Ke~iG~~sL~l~s~gee-----E~~HW~e 102 (103)
T cd08684 79 KRTIGECSLSLRTLSTQ-----ETDHWLE 102 (103)
T ss_pred cceeeEEEeecccCCHH-----Hhhhhhc
Confidence 89999999999987542 2455654
No 250
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=8.7e-05 Score=76.49 Aligned_cols=107 Identities=21% Similarity=0.273 Sum_probs=87.7
Q ss_pred CccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE-CC----EEEeeccccCCCCCccccEEEEEEeCCCceEEEEEE-e
Q 003882 379 PIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY-GL----KWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVF-D 452 (789)
Q Consensus 379 ~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~-~~----~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~-d 452 (789)
..|.+.|.|++|++|..... .+..++|||+|++ ++ .+.+|+...+|++|-+.+...|.-..+...|.+.|| |
T Consensus 267 ~~g~l~vEii~ar~l~~k~~--~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPG--SKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGD 344 (405)
T ss_pred ccCceeEEEEecccccccCC--cccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEecc
Confidence 45899999999999987632 3457999999988 22 247888899999999999898888778899999999 5
Q ss_pred CCCCCCCCCCCCCccEEEEEECcccccCc-eEeeeEeeeec
Q 003882 453 NCHLGGSGTKPDSRIGKVRIRLSTLEADR-IYTHSYPLLVL 492 (789)
Q Consensus 453 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L~~~ 492 (789)
+.++ ..+.|+|-++|-+.+|.... ....||+|...
T Consensus 345 ygRm-----d~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 345 YGRM-----DHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred cccc-----chHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 5554 37889999999999998765 77999999643
No 251
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.41 E-value=0.00012 Score=76.11 Aligned_cols=119 Identities=21% Similarity=0.283 Sum_probs=93.9
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE---C--CEEEeeccccCCCCCccccEEEEEEeC-C-----------C
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY---G--LKWVRTRTLVDNFNPKWNEQYTWEVYD-P-----------C 443 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~---~--~~~~~T~~~~~t~~P~wne~~~f~v~~-~-----------~ 443 (789)
-.|++.|+++++++.. .+....|-|+++++ + .++.+|.++++|.+|.|.|.|.+.+.. + .
T Consensus 367 ~elel~ivrg~~~pvp---~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr 443 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVP---GGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKR 443 (523)
T ss_pred hHhHHHHhhcccCCCC---CCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHh
Confidence 3677778888887653 22334688999987 2 356889999999999999999999975 2 2
Q ss_pred ceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCc-cceEEEEEEEEe
Q 003882 444 TVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVK-KMGELQLAVRFT 510 (789)
Q Consensus 444 ~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~i~l~~~f~ 510 (789)
..+.|++|+...+. +.|.++|.+.|.|..|++.-.....|+|.+ |.+ ..|++.++++..
T Consensus 444 ~g~kfeifhkggf~----rSdkl~gt~nikle~Len~cei~e~~~l~D----GRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 444 LGKKFEIFHKGGFN----RSDKLTGTGNIKLEILENMCEICEYLPLKD----GRKAVGGKLEVKVRIR 503 (523)
T ss_pred cCeeEEEeeccccc----cccceeceeeeeehhhhcccchhhceeccc----cccccCCeeEEEEEEe
Confidence 46899999988764 789999999999999999888888999974 333 368888887654
No 252
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=97.27 E-value=0.0012 Score=61.23 Aligned_cols=83 Identities=17% Similarity=0.230 Sum_probs=55.0
Q ss_pred HhccCCCCCcHHHHHhhcc----CCCccc--cchhhHHHHHHHHHHHHhHHHHHHHhcccccccCchhhHHHHHHHHHHH
Q 003882 554 RLGRAEPPLRKEVVEYMLD----VDSHMW--SMRRSKANFFRIVSLFSGAISMSKWLGEVRYWKNPVTTILVHVLFLILI 627 (789)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~----~~~~~~--s~~~~~~n~~rl~~~~~~~~~~~~~i~~l~~W~~p~~t~~~~~~~~~~~ 627 (789)
++..++....+|+.|+.=. .+.+.. ..++++.=..|++.+++.+.+.+.+++.+++|++|..|.++.+++++++
T Consensus 29 ~ls~~~~~~~deldEEfD~~ps~~~~~~lr~Rydrlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~a 108 (156)
T PF08372_consen 29 KLSHADSAHPDELDEEFDTFPSSRPPDSLRMRYDRLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAA 108 (156)
T ss_pred cccccccCCcchhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHH
Confidence 3444555555665554321 111122 2336777778888889999999999999999999999999777766655
Q ss_pred HhcchhHHHH
Q 003882 628 CYPELILPTI 637 (789)
Q Consensus 628 ~~~~l~~p~~ 637 (789)
.- -+++|+=
T Consensus 109 vv-ly~vP~r 117 (156)
T PF08372_consen 109 VV-LYFVPFR 117 (156)
T ss_pred HH-HHHhhHH
Confidence 43 3344443
No 253
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.94 E-value=0.00063 Score=70.82 Aligned_cols=121 Identities=15% Similarity=0.169 Sum_probs=93.0
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeeeeeccccCCCCCeeccEEEEEccCC-----------CCceE
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLG-----NYKGKTRHFEKKSNPEWKQVFAFSKEKI-----------QSSVL 117 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~wne~f~f~~~~~-----------~~~~l 117 (789)
..|.+.|+++.+++........|-||++.+- .++.+|.++++|..|.|+|.|.+.+... ....+
T Consensus 367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~ 446 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGK 446 (523)
T ss_pred hHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCe
Confidence 5688888999888765433346788888763 2567999999999999999999998652 24568
Q ss_pred EEEEEeCCC-CCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEee
Q 003882 118 EVFVRDREI-VGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGT 181 (789)
Q Consensus 118 ~v~V~d~~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 181 (789)
.|++|.+.. +.+|.++|.+.+.|..|...-... ..|+|.+.. ....|.|.+.+.+..
T Consensus 447 kfeifhkggf~rSdkl~gt~nikle~Len~cei~-----e~~~l~DGR--K~vGGkLevKvRiR~ 504 (523)
T KOG3837|consen 447 KFEIFHKGGFNRSDKLTGTGNIKLEILENMCEIC-----EYLPLKDGR--KAVGGKLEVKVRIRQ 504 (523)
T ss_pred eEEEeeccccccccceeceeeeeehhhhcccchh-----hceeccccc--cccCCeeEEEEEEec
Confidence 999999876 457889999999999998765444 567877654 356788888888753
No 254
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.75 E-value=0.019 Score=53.26 Aligned_cols=125 Identities=14% Similarity=0.181 Sum_probs=84.1
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcC--cEEEEEECCEEEeeccccCCCCCccccEEEEEEeCC--------------Cce
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTD--AYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDP--------------CTV 445 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~d--pyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~--------------~~~ 445 (789)
.|.++|+.++-...--. +..+..+ -.+-+.+++|+++|+.+.=+.+|.|+|.|-|++... ++.
T Consensus 10 yL~l~vlgGkAFld~l~-~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~p 88 (156)
T PF15627_consen 10 YLHLRVLGGKAFLDHLQ-EPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDP 88 (156)
T ss_pred EEEEEEeCchhHhhhhh-ccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCc
Confidence 56666666654321100 0002333 344456799999999999999999999999988632 457
Q ss_pred EEEEEEeCCCCCCCCCCCCCccEEEEEECcccccCceE--eeeEeeeecCCCCCccceEEEEEEEEeec
Q 003882 446 ITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIY--THSYPLLVLNPSGVKKMGELQLAVRFTCL 512 (789)
Q Consensus 446 l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~--~~~~~L~~~~~~g~~~~G~i~l~~~f~~~ 512 (789)
|.+-|..-|..+ ...++|.-.++...+...... .....|.+......-..|-|++++...|.
T Consensus 89 ihivli~~d~~~-----~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 89 IHIVLIRTDPSG-----ETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPN 152 (156)
T ss_pred eEEEEEEecCCC-----ceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecC
Confidence 888888877654 448999999999997754432 44555654433222357999999887764
No 255
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.45 E-value=0.029 Score=52.07 Aligned_cols=123 Identities=12% Similarity=0.168 Sum_probs=87.4
Q ss_pred eEEEEEEEEeeCCCCCCCC--CCCC--cEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCC-------------Cce
Q 003882 54 FYLYVRVEKARDLPTNPVS--GSCD--PYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQ-------------SSV 116 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~--g~~d--pyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~-------------~~~ 116 (789)
..|.|+|..++-....-.. +..+ -++-+.+++|+++|+.+..+.+|.|+|.|.|.+.... .+.
T Consensus 9 ~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~p 88 (156)
T PF15627_consen 9 RYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDP 88 (156)
T ss_pred eEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCc
Confidence 6789999998876543211 2333 3455667899999999999999999999999974331 456
Q ss_pred EEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEc--ccCCCC-CccceEEEEEEEEee
Q 003882 117 LEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRL--EDRRDD-RKVKGEVMLAVWIGT 181 (789)
Q Consensus 117 l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L--~~~~~~-~~~~G~l~l~~~~~~ 181 (789)
|++.|.--|..+...++|.-.++-..+....... .++++ .....+ .-..|-|.+++.+.+
T Consensus 89 ihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~-----~~~~vEL~G~~~e~kv~~GiL~l~lELlP 151 (156)
T PF15627_consen 89 IHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGS-----TSFTVELCGVGPESKVPVGILDLRLELLP 151 (156)
T ss_pred eEEEEEEecCCCceEeeeeceehHHHHhccCCCc-----cceeEEEeccCCCCccceeEEEEEEEeec
Confidence 7888887777666789999999988888765432 24444 333322 136799999887764
No 256
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.00 E-value=0.034 Score=63.65 Aligned_cols=110 Identities=17% Similarity=0.243 Sum_probs=80.3
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-------eeeeeccccCC-CCCeecc-EEEEE-ccCCCCceEEEEEEe
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-------YKGKTRHFEKK-SNPEWKQ-VFAFS-KEKIQSSVLEVFVRD 123 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-------~~~~T~~~~~t-~nP~wne-~f~f~-~~~~~~~~l~v~V~d 123 (789)
+.+.|+|++|.-|..++ ...||.|.+-+ ..+||+++.++ .||+|+| .|.|. |--+.-..|+|-||+
T Consensus 703 ~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye 778 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE 778 (1189)
T ss_pred eeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence 67899999999998765 34899999865 25688887775 4999986 58886 223334789999999
Q ss_pred CCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEE
Q 003882 124 REIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWI 179 (789)
Q Consensus 124 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 179 (789)
.+ ..|||+-.+++..|..+- +.+.|....+..-....|.+.+-+
T Consensus 779 Eg----gK~ig~RIlpvd~l~~GY--------rhv~LRse~Nqpl~lp~Lfv~i~~ 822 (1189)
T KOG1265|consen 779 EG----GKFIGQRILPVDGLNAGY--------RHVCLRSESNQPLTLPALFVYIVL 822 (1189)
T ss_pred cC----CceeeeeccchhcccCcc--------eeEEecCCCCCccccceeEEEEEe
Confidence 75 469999999999999874 556777665433333455555444
No 257
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.52 E-value=0.056 Score=61.96 Aligned_cols=94 Identities=26% Similarity=0.367 Sum_probs=70.6
Q ss_pred ccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE-C------CEEEeecccc-CCCCCccccE-EEEE-EeCC-CceEEE
Q 003882 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY-G------LKWVRTRTLV-DNFNPKWNEQ-YTWE-VYDP-CTVITL 448 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~-~------~~~~~T~~~~-~t~~P~wne~-~~f~-v~~~-~~~l~v 448 (789)
.+.+.|+|+.++=|..+ +.-.||.|.+ | .+.+||+++. ++.||+|+|. |.|. |.-| -..|.|
T Consensus 702 A~t~sV~VISgqFLSdr-------kvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRi 774 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDR-------KVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRI 774 (1189)
T ss_pred EeeEEEEEEeeeecccc-------ccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheee
Confidence 37999999999988754 2347999987 2 2458999987 5889999986 7773 2233 579999
Q ss_pred EEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeec
Q 003882 449 GVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVL 492 (789)
Q Consensus 449 ~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 492 (789)
.||++. ..+||+-.+|+..|.+|- +.+.|.+.
T Consensus 775 avyeEg---------gK~ig~RIlpvd~l~~GY---rhv~LRse 806 (1189)
T KOG1265|consen 775 AVYEEG---------GKFIGQRILPVDGLNAGY---RHVCLRSE 806 (1189)
T ss_pred eeeccC---------CceeeeeccchhcccCcc---eeEEecCC
Confidence 999964 469999999999998874 33455443
No 258
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=95.31 E-value=0.0056 Score=58.98 Aligned_cols=61 Identities=11% Similarity=0.069 Sum_probs=18.5
Q ss_pred HHHHhhhHHHHHhccccCCchhhHHHHHHHHHHHHHHhhhhhHHHHhhhhhhhccCCcccC
Q 003882 708 VGDMATQGERFQALLSWRDPRATSLFVIFCLIAAVVLYVTPFKIITLVAGLFWLRHPRFRS 768 (789)
Q Consensus 708 l~~~a~~~e~~~~l~~w~~p~~t~~~~~~l~~~~~~~~~iP~r~i~l~~g~~~~~~P~~r~ 768 (789)
...++..+..++.++.|+||..|..++.+|++.+.+..+++...++.+..+..+.=|.+-.
T Consensus 90 ~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~ 150 (169)
T PF02453_consen 90 AEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYE 150 (169)
T ss_dssp CCCCCHHHHHHHCCCHCT-TTGGG-------------------------------------
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHH
Confidence 3345566888899999999999999999999999988888888777765555555555543
No 259
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.16 E-value=0.16 Score=47.94 Aligned_cols=85 Identities=15% Similarity=0.164 Sum_probs=60.9
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCe----eeeeccccCCCCCeeccEEEEEc--cCC-CCceEEEEEEeC
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKL--GNY----KGKTRHFEKKSNPEWKQVFAFSK--EKI-QSSVLEVFVRDR 124 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~--~~~----~~~T~~~~~t~nP~wne~f~f~~--~~~-~~~~l~v~V~d~ 124 (789)
..++|+|+++.++...+ .+|-||++.+ +++ ...|+.+.. .++.|||.+.|++ .++ ....|.|.||+.
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 36889999999998643 4688888854 443 224554543 6899999999986 343 478999999997
Q ss_pred CCCC----CCceeEEEEEEccc
Q 003882 125 EIVG----RDDYIGKVVFDMNE 142 (789)
Q Consensus 125 ~~~~----~d~~lG~~~i~l~~ 142 (789)
..-. ....+|.+.++|-+
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred ecccCCCCceEEEEEEEEEEEC
Confidence 6421 22468988888777
No 260
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.15 E-value=0.14 Score=49.28 Aligned_cols=87 Identities=16% Similarity=0.174 Sum_probs=60.6
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEE--ECCe----eeeeccccCCCCCeeccEEEEEc--cCC-CCceEEEEEEeC
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVK--LGNY----KGKTRHFEKKSNPEWKQVFAFSK--EKI-QSSVLEVFVRDR 124 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~--~~~~----~~~T~~~~~t~nP~wne~f~f~~--~~~-~~~~l~v~V~d~ 124 (789)
..++|+|+.+.+|... ....+-||++. .|++ ...|+.+.-+.++.|||.+.|++ .++ ....|.|.||+.
T Consensus 8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 3689999999999862 23466777764 4554 33666666567899999999985 343 478999999997
Q ss_pred CCCC----------------CCceeEEEEEEccc
Q 003882 125 EIVG----------------RDDYIGKVVFDMNE 142 (789)
Q Consensus 125 ~~~~----------------~d~~lG~~~i~l~~ 142 (789)
.... ++..||.+.++|-+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEc
Confidence 5421 13466776666655
No 261
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=94.91 E-value=0.46 Score=44.16 Aligned_cols=115 Identities=20% Similarity=0.234 Sum_probs=78.1
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEE---Eeecccc-CCCCCccccEEEEEEeC---C------CceEEE
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKW---VRTRTLV-DNFNPKWNEQYTWEVYD---P------CTVITL 448 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~---~~T~~~~-~t~~P~wne~~~f~v~~---~------~~~l~v 448 (789)
.+.|.|.+..+++. .....||+...|+.. ..|.... .+..-.|||.|.+.+.- . ...+.|
T Consensus 8 ~~~l~i~~l~~~p~-------~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~ 80 (143)
T PF10358_consen 8 QFDLTIHELENLPS-------SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF 80 (143)
T ss_pred EEEEEEEEeECcCC-------CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence 67888899988874 133445555556553 4444333 46678999999997752 1 237888
Q ss_pred EEEeCCCCCCCCCCCCCccEEEEEECcccccC--ceEeeeEeeeecCCCCCccceEEEEEEEEeec
Q 003882 449 GVFDNCHLGGSGTKPDSRIGKVRIRLSTLEAD--RIYTHSYPLLVLNPSGVKKMGELQLAVRFTCL 512 (789)
Q Consensus 449 ~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~ 512 (789)
.|+....-+ ....+|++.|+|++..+. ......++|... .+....|++.|.+.+.
T Consensus 81 ~v~~~~~~~-----~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~----~~~~a~L~isi~~~~~ 137 (143)
T PF10358_consen 81 SVFEVDGSG-----KKKVLGKVSINLAEYANEDEEPITVRLLLKKC----KKSNATLSISISLSEL 137 (143)
T ss_pred EEEEecCCC-----ccceEEEEEEEHHHhhCcCCCcEEEEEeCccC----CCCCcEEEEEEEEEEC
Confidence 888864321 226999999999999874 566777888633 2345788888887653
No 262
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=94.73 E-value=0.84 Score=42.37 Aligned_cols=119 Identities=18% Similarity=0.341 Sum_probs=79.0
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCee---eeecccc-CCCCCeeccEEEEEcc--------CCCCceEEEEE
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYK---GKTRHFE-KKSNPEWKQVFAFSKE--------KIQSSVLEVFV 121 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~---~~T~~~~-~t~nP~wne~f~f~~~--------~~~~~~l~v~V 121 (789)
..+.|+|.+..+++. ....-||+...++.. .+|.... .+..-.|||+|.+.+. ..+...+.|.|
T Consensus 7 f~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v 82 (143)
T PF10358_consen 7 FQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV 82 (143)
T ss_pred EEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence 678999999999986 234456666666543 3443332 3446899999999851 13467889999
Q ss_pred EeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEeec
Q 003882 122 RDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGTQ 182 (789)
Q Consensus 122 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~ 182 (789)
+....-++...+|.+.|+|++........ ...-++|.... .....|.+++.+...
T Consensus 83 ~~~~~~~~k~~lG~~~inLaey~~~~~~~---~~~~~~l~~~~---~~~a~L~isi~~~~~ 137 (143)
T PF10358_consen 83 FEVDGSGKKKVLGKVSINLAEYANEDEEP---ITVRLLLKKCK---KSNATLSISISLSEL 137 (143)
T ss_pred EEecCCCccceEEEEEEEHHHhhCcCCCc---EEEEEeCccCC---CCCcEEEEEEEEEEC
Confidence 98854333469999999999998853111 11456666552 345677777776543
No 263
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=94.68 E-value=0.23 Score=46.86 Aligned_cols=88 Identities=20% Similarity=0.280 Sum_probs=61.6
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEE--CCEEE----eeccccCCCCCccccEEEEEEe--C-C-CceEEEEEE
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY--GLKWV----RTRTLVDNFNPKWNEQYTWEVY--D-P-CTVITLGVF 451 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~--~~~~~----~T~~~~~t~~P~wne~~~f~v~--~-~-~~~l~v~v~ 451 (789)
.++|+|+.++++... ..+|-||.+.+ |++.. .|+.+. ..++.|||-++|++. + | .+.|.|+||
T Consensus 9 ~~~v~i~~~~~~~~~------~~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~dLPr~ArL~iti~ 81 (158)
T cd08398 9 NLRIKILCATYVNVN------DIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPDLPRSARLCLSIC 81 (158)
T ss_pred CeEEEEEeeccCCCC------CcCeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhcCChhheEEEEEE
Confidence 788999999998752 24688888855 66543 444443 367999999999876 2 3 679999999
Q ss_pred eCCCCCCCCCCCCCccEEEEEECccc
Q 003882 452 DNCHLGGSGTKPDSRIGKVRIRLSTL 477 (789)
Q Consensus 452 d~~~~~~~~~~~d~~lG~~~i~l~~l 477 (789)
+...-. +.+.....||.+.++|-+-
T Consensus 82 ~~~~~~-~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 82 SVKGRK-GAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred EEeccc-CCCCceEEEEEEEEEEECC
Confidence 965321 0111235799999998883
No 264
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=94.04 E-value=0.34 Score=45.83 Aligned_cols=89 Identities=17% Similarity=0.277 Sum_probs=61.6
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCe----eeeeccccCCCCCeeccEEEEEc--cCC-CCceEEEEEEeC
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKL--GNY----KGKTRHFEKKSNPEWKQVFAFSK--EKI-QSSVLEVFVRDR 124 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~--~~~----~~~T~~~~~t~nP~wne~f~f~~--~~~-~~~~l~v~V~d~ 124 (789)
..++|++....++...+ ....+-||++.+ +++ ...|+......++.|||.+.|++ .++ ....|.|.||+.
T Consensus 8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 45788888888876522 234566777644 443 22444444447899999999985 343 478999999998
Q ss_pred CCCC--CCceeEEEEEEcccc
Q 003882 125 EIVG--RDDYIGKVVFDMNEV 143 (789)
Q Consensus 125 ~~~~--~d~~lG~~~i~l~~l 143 (789)
+..+ ++..||.+.++|-+-
T Consensus 87 ~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 87 SEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred ecCCCCcceEEEEEeEEeEcc
Confidence 7643 457999999888774
No 265
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=93.93 E-value=0.56 Score=44.39 Aligned_cols=94 Identities=17% Similarity=0.266 Sum_probs=66.9
Q ss_pred CCCCcEEEEEE--CCe----eeeeccccCCCCCeeccEEEEEc--cCC-CCceEEEEEEeCCCCCCCceeEEEEEEcccc
Q 003882 73 GSCDPYVEVKL--GNY----KGKTRHFEKKSNPEWKQVFAFSK--EKI-QSSVLEVFVRDREIVGRDDYIGKVVFDMNEV 143 (789)
Q Consensus 73 g~~dpyv~v~~--~~~----~~~T~~~~~t~nP~wne~f~f~~--~~~-~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l 143 (789)
..+|-||++.+ +++ ..+|+.+.-+..+.|||...|++ .++ ....|.|.|||.+..++...+|.+.++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 45788888855 443 23666666567789999999986 343 4789999999988655677999999988774
Q ss_pred CCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEeecCCCcC
Q 003882 144 PTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGTQADEAF 187 (789)
Q Consensus 144 ~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~d~~~ 187 (789)
. + ++ ..|...+.+|....+|...
T Consensus 108 ~-g----------~L----------r~G~~~l~lw~~~~~d~~~ 130 (159)
T cd08397 108 D-G----------TL----------RRGRQKLRVWPDVEADGSI 130 (159)
T ss_pred C-C----------cE----------ecCCEEEEEEeCCCCCCcc
Confidence 2 1 11 2578888888776666543
No 266
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=93.73 E-value=0.13 Score=52.09 Aligned_cols=117 Identities=17% Similarity=0.162 Sum_probs=76.8
Q ss_pred CccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCC
Q 003882 379 PIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLK-WVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLG 457 (789)
Q Consensus 379 ~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~ 457 (789)
..|.|.+++++++||..... ..+-+-+-||+++++.+ ..||.+......-.|.|.|..++.. ...+.+-||.|+.-.
T Consensus 49 ~tGiL~~H~~~GRGLr~~p~-~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq~ 126 (442)
T KOG1452|consen 49 STGILYFHAYNGRGLRMTPQ-QKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQR 126 (442)
T ss_pred ccceEEEEEecccccccChh-ccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCchh
Confidence 34899999999999986543 22345789999999765 5888887777777899999998875 557788888887532
Q ss_pred CCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEE
Q 003882 458 GSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRF 509 (789)
Q Consensus 458 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 509 (789)
++.+--.-.|.+..+.. +.-.+-+.|.- .+.|++.+++.|
T Consensus 127 -----RHKLC~~g~l~~~~v~r-qspd~~~Al~l------ePrgq~~~r~~~ 166 (442)
T KOG1452|consen 127 -----RHKLCHLGLLEAFVVDR-QSPDRVVALYL------EPRGQPPLRLPL 166 (442)
T ss_pred -----hccccccchhhhhhhhh-cCCcceeeeec------ccCCCCceeccc
Confidence 33322122333333332 22233344432 245888888765
No 267
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=93.68 E-value=0.78 Score=38.11 Aligned_cols=63 Identities=27% Similarity=0.357 Sum_probs=48.6
Q ss_pred CCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCceeEEEEEEcccc
Q 003882 75 CDPYVEVKLGNY-KGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEV 143 (789)
Q Consensus 75 ~dpyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l 143 (789)
++..+.+.+++. ..+|.-.. ..+..|||.|.++++. +.+|+|.||=+|- ..+-|...+.|++.
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR--sRELEI~VywrD~---RslCav~~lrLEd~ 72 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER--SRELEIAVYWRDW---RSLCAVKFLKLEDE 72 (98)
T ss_pred cceEEEEEEcCeEEeeccccc-cccccccceeEEEeec--ccEEEEEEEEecc---hhhhhheeeEhhhh
Confidence 678899999884 56776554 3589999999999876 5799999997764 44667777788874
No 268
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=93.04 E-value=0.35 Score=45.77 Aligned_cols=69 Identities=20% Similarity=0.272 Sum_probs=51.7
Q ss_pred CcCcEEEEEE--CCEE----EeeccccCCCCCccccEEEEEEe--C-C-CceEEEEEEeCCCCCCCCCCCCCccEEEEEE
Q 003882 404 TTDAYCVAKY--GLKW----VRTRTLVDNFNPKWNEQYTWEVY--D-P-CTVITLGVFDNCHLGGSGTKPDSRIGKVRIR 473 (789)
Q Consensus 404 ~~dpyv~v~~--~~~~----~~T~~~~~t~~P~wne~~~f~v~--~-~-~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~ 473 (789)
.+|-||.+.+ |++. .+|+.+.-+..+.|||-+.|+|. + | .+.|.|+|||.+..+ ....||.+.++
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~-----~~~~vg~~~~~ 103 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTG-----KAVPFGGTTLS 103 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCC-----CceEEEEEEEe
Confidence 5677888855 6554 36655555667899999999886 2 3 679999999976532 56799999999
Q ss_pred Cccc
Q 003882 474 LSTL 477 (789)
Q Consensus 474 l~~l 477 (789)
|-+-
T Consensus 104 lFd~ 107 (159)
T cd08397 104 LFNK 107 (159)
T ss_pred eECC
Confidence 8875
No 269
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=92.98 E-value=0.36 Score=49.03 Aligned_cols=114 Identities=19% Similarity=0.216 Sum_probs=77.9
Q ss_pred ceeEEEEEEEEeeCCCCCCC--CCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCC
Q 003882 52 QMFYLYVRVEKARDLPTNPV--SGSCDPYVEVKLGNY-KGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVG 128 (789)
Q Consensus 52 ~~~~L~V~v~~a~~L~~~~~--~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~ 128 (789)
-.|+|.+++.++++|..... +-+-+-||++....+ +.||.+.....--.|.|+|..++.+. ..+.+-||.++.-.
T Consensus 49 ~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~--~vl~~lvySW~pq~ 126 (442)
T KOG1452|consen 49 STGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI--EVLHYLVYSWPPQR 126 (442)
T ss_pred ccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccc--eeeeEEEeecCchh
Confidence 44899999999999975432 456789999999886 56888887777889999999998663 67888999888743
Q ss_pred CCc--eeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEe
Q 003882 129 RDD--YIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIG 180 (789)
Q Consensus 129 ~d~--~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 180 (789)
+.. ..| -+.+..+.... ++ .-+.|.- +.+|++.+++.+.
T Consensus 127 RHKLC~~g--~l~~~~v~rqs-pd-----~~~Al~l-----ePrgq~~~r~~~~ 167 (442)
T KOG1452|consen 127 RHKLCHLG--LLEAFVVDRQS-PD-----RVVALYL-----EPRGQPPLRLPLA 167 (442)
T ss_pred hccccccc--hhhhhhhhhcC-Cc-----ceeeeec-----ccCCCCceecccC
Confidence 333 345 33343443332 22 3334433 2357777777553
No 270
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=92.87 E-value=0.63 Score=44.78 Aligned_cols=86 Identities=19% Similarity=0.317 Sum_probs=58.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCeEEEEEE--CCeE----EeeecccCCCCCCccCceeEEEee---CCCCCeEEEEEEEc
Q 003882 218 YLRVNVIEAQDVEPLDKSQLPQAFVEAQV--GNQV----LKTKLCPTRTTNPLWNEDLIFVAA---EPFEEQLVLTVENK 288 (789)
Q Consensus 218 ~L~V~v~~ar~L~~~~~~~~~dpyv~v~l--~~~~----~kT~~~~~~t~nP~wne~f~f~~~---~~~~~~l~i~V~d~ 288 (789)
.++|+|+.+.++...+ ...+-||++.+ |++. ..|+...- +.++.|||.+.|++. -|.+..|.|+||+.
T Consensus 9 ~f~i~i~~~~~~~~~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~~-~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 9 KFSITLHKISNLNAAE--RTMKVGVQAGLFHGGESLCKTVKTSEVSG-KNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CEEEEEEEeccCccCC--CCceEEEEEEEEECCEEccCceEccccCC-CCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 3889999999998622 34567777644 5543 34544432 577999999999763 34677999999987
Q ss_pred cCCC----------------CCCceEEEEEeccc
Q 003882 289 VTPA----------------KDEPLGRLRLSLNV 306 (789)
Q Consensus 289 d~~~----------------~d~~iG~~~i~l~~ 306 (789)
.... ....||.+.+.|-+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEc
Confidence 5321 23578888777764
No 271
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=92.17 E-value=0.71 Score=44.41 Aligned_cols=90 Identities=18% Similarity=0.164 Sum_probs=62.3
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCee----eeecccc----CCCCCeeccEEEEEc--cC-CCCceEEEE
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKL--GNYK----GKTRHFE----KKSNPEWKQVFAFSK--EK-IQSSVLEVF 120 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~--~~~~----~~T~~~~----~t~nP~wne~f~f~~--~~-~~~~~l~v~ 120 (789)
..+.|+|..+.+++........|-||.+.+ +++. ..|+... -...+.|||.+.|++ .+ +....|.|.
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 468899999999987664445788888754 5542 2444322 123678999999986 33 347899999
Q ss_pred EEeCCCCC---------CCceeEEEEEEcccc
Q 003882 121 VRDREIVG---------RDDYIGKVVFDMNEV 143 (789)
Q Consensus 121 V~d~~~~~---------~d~~lG~~~i~l~~l 143 (789)
||+....+ .+..||.+.++|-+.
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 99976543 346788887777663
No 272
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=91.94 E-value=0.79 Score=43.35 Aligned_cols=87 Identities=31% Similarity=0.452 Sum_probs=58.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCeEEEEEE--CCeE----EeeecccCCCCCCccCceeEEEee---CCCCCeEEEEEEEcc
Q 003882 219 LRVNVIEAQDVEPLDKSQLPQAFVEAQV--GNQV----LKTKLCPTRTTNPLWNEDLIFVAA---EPFEEQLVLTVENKV 289 (789)
Q Consensus 219 L~V~v~~ar~L~~~~~~~~~dpyv~v~l--~~~~----~kT~~~~~~t~nP~wne~f~f~~~---~~~~~~l~i~V~d~d 289 (789)
++|.+....++...+ ....+-||++.+ |++. ..|..... ..++.|||...|++. -+.+..|.|+||+.+
T Consensus 10 ~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~-~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 10 LRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPF-STSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred eEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcC-CCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 778888888776521 223566776644 4432 23333322 368999999999853 346779999999986
Q ss_pred CCC--CCCceEEEEEecccc
Q 003882 290 TPA--KDEPLGRLRLSLNVI 307 (789)
Q Consensus 290 ~~~--~d~~iG~~~i~l~~l 307 (789)
... .+..||.++++|-+-
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred cCCCCcceEEEEEeEEeEcc
Confidence 543 468999999998754
No 273
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=91.42 E-value=2 Score=35.78 Aligned_cols=85 Identities=15% Similarity=0.134 Sum_probs=60.9
Q ss_pred CCcCcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccCc
Q 003882 403 GTTDAYCVAKYGLK-WVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADR 481 (789)
Q Consensus 403 ~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 481 (789)
|.++..|++++++. ..+|.... ..+..|++.|.+++.. +..|+|.||=.|. ..+-|-..+.|.+...
T Consensus 7 ~~~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR-sRELEI~VywrD~--------RslCav~~lrLEd~~~-- 74 (98)
T cd08687 7 GCSEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER-SRELEIAVYWRDW--------RSLCAVKFLKLEDERH-- 74 (98)
T ss_pred cccceEEEEEEcCeEEeeccccc-cccccccceeEEEeec-ccEEEEEEEEecc--------hhhhhheeeEhhhhcc--
Confidence 34678999999875 57777754 3578999999998874 7789999997664 2366777888888432
Q ss_pred eEeeeEeeeecCCCCCccceEEEEEEEE
Q 003882 482 IYTHSYPLLVLNPSGVKKMGELQLAVRF 509 (789)
Q Consensus 482 ~~~~~~~L~~~~~~g~~~~G~i~l~~~f 509 (789)
....+|. ++|.+..++.|
T Consensus 75 --~~~~~le--------pqg~l~~ev~f 92 (98)
T cd08687 75 --EVQLDME--------PQLCLVAELTF 92 (98)
T ss_pred --cceeccc--------cccEEEEEEEe
Confidence 2233332 56888888877
No 274
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=89.76 E-value=2.3 Score=40.87 Aligned_cols=71 Identities=13% Similarity=0.176 Sum_probs=46.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEE--ECCe---eeeeccccCCCCCeeccEEEEEc--cCC-CCceEEEEEEeCCC
Q 003882 55 YLYVRVEKARDLPTNPVSGSCDPYVEVK--LGNY---KGKTRHFEKKSNPEWKQVFAFSK--EKI-QSSVLEVFVRDREI 126 (789)
Q Consensus 55 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~--~~~~---~~~T~~~~~t~nP~wne~f~f~~--~~~-~~~~l~v~V~d~~~ 126 (789)
.++|+|..+.++.. +......-||++. .+++ ..+|+...-+.++.|||.+.|++ .++ ....|.|.||+...
T Consensus 11 ~friki~~~~~~~~-~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~ 89 (178)
T cd08399 11 KFRVKILGIDIPVL-PRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA 89 (178)
T ss_pred CEEEEEEeecccCc-CCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence 57788888874432 2222233455553 3443 23566666677899999999986 343 47899999999743
No 275
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=89.74 E-value=3.5 Score=38.27 Aligned_cols=75 Identities=16% Similarity=0.274 Sum_probs=50.9
Q ss_pred eeccccCC-CCCeeccEEEEEc--cCC-CCceEEEEEEeCCCCCCC----ceeEEEEEEccccCCCCCCCCCCCCeeEEc
Q 003882 89 KTRHFEKK-SNPEWKQVFAFSK--EKI-QSSVLEVFVRDREIVGRD----DYIGKVVFDMNEVPTRVPPDSPLAPQWYRL 160 (789)
Q Consensus 89 ~T~~~~~t-~nP~wne~f~f~~--~~~-~~~~l~v~V~d~~~~~~d----~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 160 (789)
.|+...-+ .++.|||.+.|++ .++ ....|.|.||+.+..... ..||.+.++|-+....
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~~~-------------- 88 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYRGQ-------------- 88 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TTSB--------------
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCCCc--------------
Confidence 56666655 7999999999985 443 478999999998775444 6899999888775221
Q ss_pred ccCCCCCccceEEEEEEEEeecCC
Q 003882 161 EDRRDDRKVKGEVMLAVWIGTQAD 184 (789)
Q Consensus 161 ~~~~~~~~~~G~l~l~~~~~~~~d 184 (789)
-..|...+.+|-....+
T Consensus 89 -------L~~G~~~L~lW~~~~~~ 105 (142)
T PF00792_consen 89 -------LRQGPQKLSLWPDEEPD 105 (142)
T ss_dssp -------BEEEEEEEE-EET-TTS
T ss_pred -------ccCCCEEEEEEcCCCCc
Confidence 23688888887654433
No 276
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=89.63 E-value=3.7 Score=39.49 Aligned_cols=91 Identities=15% Similarity=0.176 Sum_probs=55.9
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEE--CCEE---EeeccccCCCCCccccEEEEEEe--C-C-CceEEEEEEe
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY--GLKW---VRTRTLVDNFNPKWNEQYTWEVY--D-P-CTVITLGVFD 452 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~--~~~~---~~T~~~~~t~~P~wne~~~f~v~--~-~-~~~l~v~v~d 452 (789)
.++|+|..+..+. .+ ......-||.+.+ |++. .+|..+.-+.++.|||-+.|++. + | .+.|.|+||+
T Consensus 11 ~friki~~~~~~~-~~---~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~ 86 (178)
T cd08399 11 KFRVKILGIDIPV-LP---RNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYC 86 (178)
T ss_pred CEEEEEEeecccC-cC---CCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEE
Confidence 6777888876432 21 1112334555533 5554 35666555678999999999876 2 3 6799999999
Q ss_pred CCCCC-----------CCCCCCCCccEEEEEECcc
Q 003882 453 NCHLG-----------GSGTKPDSRIGKVRIRLST 476 (789)
Q Consensus 453 ~~~~~-----------~~~~~~d~~lG~~~i~l~~ 476 (789)
..... ...++.+..||.+.+.|-+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD 121 (178)
T cd08399 87 GKAPALSSKKSAESPSSESKGKHQLLYYVNLLLID 121 (178)
T ss_pred EecCcccccccccccccccccccceEEEEEEEEEc
Confidence 63211 0012245678888888777
No 277
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=89.43 E-value=1.8 Score=41.68 Aligned_cols=90 Identities=23% Similarity=0.331 Sum_probs=62.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCeEEEEEE--CCeE----Eeeeccc--C-CCCCCccCceeEEEee---CCCCCeEEEEE
Q 003882 218 YLRVNVIEAQDVEPLDKSQLPQAFVEAQV--GNQV----LKTKLCP--T-RTTNPLWNEDLIFVAA---EPFEEQLVLTV 285 (789)
Q Consensus 218 ~L~V~v~~ar~L~~~~~~~~~dpyv~v~l--~~~~----~kT~~~~--~-~t~nP~wne~f~f~~~---~~~~~~l~i~V 285 (789)
.+.|+|.++.+++........|-||++.+ |++. ..|+... + -...+.|||.+.|.+. -+.+..|.|+|
T Consensus 9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl 88 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL 88 (171)
T ss_pred cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence 48899999999998765555788888755 5443 2333211 1 1235679999999763 34677999999
Q ss_pred EEccCCC---------CCCceEEEEEecccc
Q 003882 286 ENKVTPA---------KDEPLGRLRLSLNVI 307 (789)
Q Consensus 286 ~d~d~~~---------~d~~iG~~~i~l~~l 307 (789)
|+..... .+..||.+.++|-+-
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 89 YGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEecCCccccccccccceEEEEEeEeeEcc
Confidence 9876533 456899988888653
No 278
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=87.95 E-value=3.5 Score=38.23 Aligned_cols=54 Identities=20% Similarity=0.297 Sum_probs=39.2
Q ss_pred eeccccCC-CCCccccEEEEEEe--C-C-CceEEEEEEeCCCCCCCCCCCC----CccEEEEEECccc
Q 003882 419 RTRTLVDN-FNPKWNEQYTWEVY--D-P-CTVITLGVFDNCHLGGSGTKPD----SRIGKVRIRLSTL 477 (789)
Q Consensus 419 ~T~~~~~t-~~P~wne~~~f~v~--~-~-~~~l~v~v~d~~~~~~~~~~~d----~~lG~~~i~l~~l 477 (789)
.|+.+.-+ .++.|||.+.|++. + | .+.|.|+||+.+... .+ ..||.+.++|-+-
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~-----~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKK-----KSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECST-----TT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCC-----ccccceeEEEEEEEEeECC
Confidence 56655555 79999999999875 2 3 679999999866532 22 6899999999886
No 279
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=86.96 E-value=0.76 Score=53.81 Aligned_cols=107 Identities=17% Similarity=0.190 Sum_probs=84.2
Q ss_pred CCcCcEEEEEECCE-EEeeccccCC-CCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccC
Q 003882 403 GTTDAYCVAKYGLK-WVRTRTLVDN-FNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEAD 480 (789)
Q Consensus 403 ~~~dpyv~v~~~~~-~~~T~~~~~t-~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~ 480 (789)
...++|+.+.+... ..+|...++. -+|.|.+.|......+...+.+.|-+.+..| ....+|.+.++...+..+
T Consensus 136 ~~~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G-----~s~~w~~v~~s~~~~~~~ 210 (887)
T KOG1329|consen 136 KTLENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPG-----WSKRWGRVKISFLQYCSG 210 (887)
T ss_pred hhccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCcccc-----ceeEEEEeccchhhhhcc
Confidence 34799999999765 4788888877 6999999998888888889999999988764 578999999999999998
Q ss_pred ceEeeeEeeeecCCCCCccceEEEEEEEEeecCh
Q 003882 481 RIYTHSYPLLVLNPSGVKKMGELQLAVRFTCLSL 514 (789)
Q Consensus 481 ~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~~~ 514 (789)
.....|+++...+..-..+.-.+.+++.|.+...
T Consensus 211 ~~~~~~~~Il~~d~~~~~~~~~~~~~~~~~~~~~ 244 (887)
T KOG1329|consen 211 HRIGGWFPILDNDGKPHQKGSNESLRLGFTPMEK 244 (887)
T ss_pred ccccceeeeeccCCccccCCcccceEEeeEeech
Confidence 8889999987665433333345666677766543
No 280
>PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains [].
Probab=86.61 E-value=1.3 Score=35.38 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=33.2
Q ss_pred eccccccccCCCCCcceeEEccccCcccchhcccccccccceEEEEEEEcCc
Q 003882 303 SLNVIERRLDHRPVHSKWFNLEKFGFGALELDKRHELKFSSRIHLRVCLEGA 354 (789)
Q Consensus 303 ~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~~~~ 354 (789)
+++.+.. ++++.+..+|..|.++. +.+...+|++++.+++.+.
T Consensus 2 DlgtVY~-qP~H~~~~KW~~L~dP~--------D~~~G~kGYlKv~i~Vlg~ 44 (72)
T PF08151_consen 2 DLGTVYN-QPDHQFYRKWALLTDPD--------DTSAGVKGYLKVDISVLGP 44 (72)
T ss_pred ceeeeec-CCCCeeEeceEEecCCC--------CCccCCceEEEEEEEEEcC
Confidence 4455553 46788899999999884 3456779999999999876
No 281
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=86.20 E-value=6.3 Score=38.21 Aligned_cols=40 Identities=15% Similarity=0.279 Sum_probs=32.6
Q ss_pred eeeeccccCCCCCeeccEEEEEcc--CCCCceEEEEEEeCCC
Q 003882 87 KGKTRHFEKKSNPEWKQVFAFSKE--KIQSSVLEVFVRDREI 126 (789)
Q Consensus 87 ~~~T~~~~~t~nP~wne~f~f~~~--~~~~~~l~v~V~d~~~ 126 (789)
.++|.+...+.+|.|+|++.+.+. ......|.|+.+....
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~ 95 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCST 95 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeee
Confidence 568999999999999999999873 3457889998877543
No 282
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=86.18 E-value=2.3 Score=41.40 Aligned_cols=58 Identities=12% Similarity=0.167 Sum_probs=35.3
Q ss_pred EEeeccccCCCCCccccEEEEEEeC---CCceEEEEEEeCCCCCCCCCCCCCccEEEEEECcc
Q 003882 417 WVRTRTLVDNFNPKWNEQYTWEVYD---PCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLST 476 (789)
Q Consensus 417 ~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~ 476 (789)
.+.|.+.+++.+|.|+|+|.+.+.. +...|.|++++-..-. ....+..+|.+.+||.+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~--~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKE--SKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SS--SS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeecccc--ccCccceeEEEEEEeee
Confidence 4788889999999999999998875 3678999999966531 11112799999999998
No 283
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=86.08 E-value=4.8 Score=39.08 Aligned_cols=59 Identities=10% Similarity=0.116 Sum_probs=44.0
Q ss_pred EEEeeccccCCCCCccccEEEEEEeC---CCceEEEEEEeCCCCCCCCCCCCCccEEEEEECc
Q 003882 416 KWVRTRTLVDNFNPKWNEQYTWEVYD---PCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLS 475 (789)
Q Consensus 416 ~~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~ 475 (789)
..++|.+.+++.+|.|||++.+.+.. +...|.|++++...-. .+......+|-+.+||-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~-~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNE-AKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeecccc-ccCCCCCceEEEEEeee
Confidence 45889999999999999999998873 4678999998865421 01112357999999986
No 284
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=84.01 E-value=6.6 Score=33.88 Aligned_cols=71 Identities=18% Similarity=0.247 Sum_probs=48.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCe----eeeeccccCCCCCeeccEEEEEc--cC-CCCceEEEEEEeCCC
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKL--GNY----KGKTRHFEKKSNPEWKQVFAFSK--EK-IQSSVLEVFVRDREI 126 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~--~~~----~~~T~~~~~t~nP~wne~f~f~~--~~-~~~~~l~v~V~d~~~ 126 (789)
+.+.+..+.+.........++-||++.+ +++ ...|+.+.-...+.|||...|++ .+ +....|.|.||+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 6677777777766543333578888854 443 23565555556799999999986 33 347899999998643
No 285
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=83.24 E-value=11 Score=36.60 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=33.1
Q ss_pred eeeeeccccCCCCCeeccEEEEEc--cCCCCceEEEEEEeCC
Q 003882 86 YKGKTRHFEKKSNPEWKQVFAFSK--EKIQSSVLEVFVRDRE 125 (789)
Q Consensus 86 ~~~~T~~~~~t~nP~wne~f~f~~--~~~~~~~l~v~V~d~~ 125 (789)
..++|.+...+.+|.|+|++.+.+ +......|.|+++...
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S 94 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRS 94 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeec
Confidence 367999999999999999999987 3445789999998754
No 286
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=83.05 E-value=4.5 Score=35.34 Aligned_cols=96 Identities=7% Similarity=-0.003 Sum_probs=51.7
Q ss_pred EEEEEECCe-eeeeccccCCCCCeeccEEEEEccCC-------CCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCC
Q 003882 78 YVEVKLGNY-KGKTRHFEKKSNPEWKQVFAFSKEKI-------QSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPP 149 (789)
Q Consensus 78 yv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~~~~~-------~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~ 149 (789)
||.+.+-.. ...|.++. ..||.+|-+-.|.+... ++..+.|+++..-. .....+|.+.+++..+..+...
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ll~~~~~ 79 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPLLESNGE 79 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHHHH--S-
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhhhcCCCc
Confidence 566666664 45666665 88999999999987432 47889999998764 3468999999999999855331
Q ss_pred CCCCCCeeEEcccCCCCCccceEEEEEEEEe
Q 003882 150 DSPLAPQWYRLEDRRDDRKVKGEVMLAVWIG 180 (789)
Q Consensus 150 ~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 180 (789)
. ......|.+..++ ..|.|...+++.
T Consensus 80 ~---i~~~~~l~g~~~~--~~g~l~y~~rl~ 105 (107)
T PF11618_consen 80 R---IHGSATLVGVSGE--DFGTLEYWIRLR 105 (107)
T ss_dssp ----EEEEEEE-BSSS---TSEEEEEEEEEE
T ss_pred e---EEEEEEEeccCCC--eEEEEEEEEEec
Confidence 1 1144556555543 678888777653
No 287
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=82.63 E-value=3.2 Score=48.85 Aligned_cols=86 Identities=15% Similarity=0.233 Sum_probs=71.5
Q ss_pred CCcEEEEEECCe-eeeeccccCC-CCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCC
Q 003882 75 CDPYVEVKLGNY-KGKTRHFEKK-SNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSP 152 (789)
Q Consensus 75 ~dpyv~v~~~~~-~~~T~~~~~t-~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~ 152 (789)
.++|+.+.+... ..+|..+.+. .+|.|.+.|........ ..+.+.|.+.+..+....+|.+.+++..+..+...+
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~-g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~-- 214 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKA-GYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIG-- 214 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccccc-cEEEEeecCCccccceeEEEEeccchhhhhcccccc--
Confidence 488999998864 4577777777 69999999988887764 789999999998877899999999999999875555
Q ss_pred CCCeeEEcccCCCC
Q 003882 153 LAPQWYRLEDRRDD 166 (789)
Q Consensus 153 ~~~~w~~L~~~~~~ 166 (789)
.|+++.+.++.
T Consensus 215 ---~~~~Il~~d~~ 225 (887)
T KOG1329|consen 215 ---GWFPILDNDGK 225 (887)
T ss_pred ---ceeeeeccCCc
Confidence 89998877654
No 288
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=82.16 E-value=2.9 Score=40.53 Aligned_cols=57 Identities=16% Similarity=0.143 Sum_probs=42.9
Q ss_pred EEeeccccCCCCCccccEEEEEEeC---CCceEEEEEEeCCCCCCCCCCCCCccEEEEEECcc
Q 003882 417 WVRTRTLVDNFNPKWNEQYTWEVYD---PCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLST 476 (789)
Q Consensus 417 ~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~ 476 (789)
.++|.+.+++.+|.|||++.+.+.. +...|.|++++...-. ......+|.+.+||-+
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~---k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKD---KGEKKLFGFSFVPLMR 113 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeecc---CCCCCceEEEEEeecc
Confidence 4689999999999999999998873 4678889888855421 1122678988888854
No 289
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=81.45 E-value=9.1 Score=33.48 Aligned_cols=93 Identities=17% Similarity=0.217 Sum_probs=50.7
Q ss_pred EEEEEECC-EEEeeccccCCCCCccccEEEEEEeCC--------CceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccc
Q 003882 408 YCVAKYGL-KWVRTRTLVDNFNPKWNEQYTWEVYDP--------CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLE 478 (789)
Q Consensus 408 yv~v~~~~-~~~~T~~~~~t~~P~wne~~~f~v~~~--------~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~ 478 (789)
||.+.+-. +..-|+++. ..+|.+|-...|.|.-. ...+.|+++..-. .....||.+.|++.++.
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g------~d~~tla~~~i~l~~ll 74 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG------SDFETLAAGQISLRPLL 74 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S------S-EEEEEEEEE--SHHH
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc------CCeEEEEEEEeechhhh
Confidence 77777744 455666655 88999999988888743 4588898888442 24679999999999988
Q ss_pred cCc--eEeeeEeeeecCCCCCccceEEEEEEEEe
Q 003882 479 ADR--IYTHSYPLLVLNPSGVKKMGELQLAVRFT 510 (789)
Q Consensus 479 ~~~--~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 510 (789)
... .......|.+.+ |. .-|.|+..++..
T Consensus 75 ~~~~~~i~~~~~l~g~~--~~-~~g~l~y~~rl~ 105 (107)
T PF11618_consen 75 ESNGERIHGSATLVGVS--GE-DFGTLEYWIRLR 105 (107)
T ss_dssp H--S--EEEEEEE-BSS--S--TSEEEEEEEEEE
T ss_pred cCCCceEEEEEEEeccC--CC-eEEEEEEEEEec
Confidence 433 355556665442 22 569998887754
No 290
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=80.53 E-value=5.2 Score=38.95 Aligned_cols=56 Identities=7% Similarity=0.070 Sum_probs=32.5
Q ss_pred eeeeccccCCCCCeeccEEEEEccC--CCCceEEEEEEeCCCCCCC---ceeEEEEEEccc
Q 003882 87 KGKTRHFEKKSNPEWKQVFAFSKEK--IQSSVLEVFVRDREIVGRD---DYIGKVVFDMNE 142 (789)
Q Consensus 87 ~~~T~~~~~t~nP~wne~f~f~~~~--~~~~~l~v~V~d~~~~~~d---~~lG~~~i~l~~ 142 (789)
.+.|.+..++.+|.|+|+|.+.+.. .....|.|++++...-.+. ..+|.+.++|-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 4688888899999999999998733 3468899999987652211 577876666655
No 291
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=79.37 E-value=7.4 Score=37.46 Aligned_cols=61 Identities=11% Similarity=0.114 Sum_probs=44.3
Q ss_pred EEEeeccccCCCCCccccEEEEEEeC---CCceEEEEEEeCCCCCCC-CCCCCCccEEEEEECcc
Q 003882 416 KWVRTRTLVDNFNPKWNEQYTWEVYD---PCTVITLGVFDNCHLGGS-GTKPDSRIGKVRIRLST 476 (789)
Q Consensus 416 ~~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v~v~d~~~~~~~-~~~~d~~lG~~~i~l~~ 476 (789)
..+.|.+.+++.+|.|+|++.+.+.- +...|.|+.++-+.-... +......+|.+.+||-+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 45788888999999999999888764 356899999986542100 11224678988888875
No 292
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=79.37 E-value=9.6 Score=36.45 Aligned_cols=71 Identities=8% Similarity=0.162 Sum_probs=55.1
Q ss_pred CCCcEEEEEECCe-eeeeccccC--CCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCceeEEEEEEccccCCC
Q 003882 74 SCDPYVEVKLGNY-KGKTRHFEK--KSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTR 146 (789)
Q Consensus 74 ~~dpyv~v~~~~~-~~~T~~~~~--t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~ 146 (789)
...-|+++.++++ ..+|+...- ...-.|||.|.+.+... ...|.++||.... ..+..|+++.+++-.....
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~-Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~~ 109 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRW-PESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVH 109 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecC-CCEEEEEEEEccC-ccceEEEEEEeeCCCCccc
Confidence 4567999999985 456655433 33467899999999775 4899999999988 5799999999998765544
No 293
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=79.33 E-value=13 Score=31.99 Aligned_cols=71 Identities=23% Similarity=0.302 Sum_probs=45.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCeEEEEEE--CCeE----EeeecccCCCCCCccCceeEEEee---CCCCCeEEEEEEEcc
Q 003882 219 LRVNVIEAQDVEPLDKSQLPQAFVEAQV--GNQV----LKTKLCPTRTTNPLWNEDLIFVAA---EPFEEQLVLTVENKV 289 (789)
Q Consensus 219 L~V~v~~ar~L~~~~~~~~~dpyv~v~l--~~~~----~kT~~~~~~t~nP~wne~f~f~~~---~~~~~~l~i~V~d~d 289 (789)
+.+.+....+.........++-||++.+ |++. ..|+... ....+.|||...|++. -+.+..|.|++|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~-~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKP-FFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccC-CCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 4566666666665443333578888754 4432 2444433 2556899999999763 346779999999864
Q ss_pred C
Q 003882 290 T 290 (789)
Q Consensus 290 ~ 290 (789)
.
T Consensus 92 ~ 92 (100)
T smart00142 92 N 92 (100)
T ss_pred C
Confidence 3
No 294
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=77.79 E-value=10 Score=36.29 Aligned_cols=80 Identities=19% Similarity=0.226 Sum_probs=57.7
Q ss_pred cCcEEEEEECCEE-Eeecccc--CCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccC-
Q 003882 405 TDAYCVAKYGLKW-VRTRTLV--DNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEAD- 480 (789)
Q Consensus 405 ~dpyv~v~~~~~~-~~T~~~~--~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~- 480 (789)
..-|++|.++++. .+|+... ....-.|||.|.+.+..--..|.++||..... .+..|+.+.||+......
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~~------~~~~la~v~vpvP~~~~~~ 110 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSGL------SDRLLAEVFVPVPGSTVHT 110 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccCc------cceEEEEEEeeCCCCcccc
Confidence 4569999998765 6666543 23345669999999988777899999997763 788999999998886543
Q ss_pred -ce--EeeeEeee
Q 003882 481 -RI--YTHSYPLL 490 (789)
Q Consensus 481 -~~--~~~~~~L~ 490 (789)
.. ...|+.+.
T Consensus 111 ~~~~~~~~~~eFs 123 (168)
T PF15625_consen 111 STDNVPLEEYEFS 123 (168)
T ss_pred cccCCceEeEEEc
Confidence 11 34555554
No 295
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=75.94 E-value=4.6 Score=44.25 Aligned_cols=45 Identities=18% Similarity=0.235 Sum_probs=34.4
Q ss_pred ccEEEEEECcc-cccCceEeeeEeeeecCCCCCccceEEEEEEEEeec
Q 003882 466 RIGKVRIRLST-LEADRIYTHSYPLLVLNPSGVKKMGELQLAVRFTCL 512 (789)
Q Consensus 466 ~lG~~~i~l~~-l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~ 512 (789)
.+|.+.|++.. +..++..+.|||+.+....+. ..|.+ ++++|...
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~-~~~~l-lk~~~~~~ 46 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSV-GEGLI-IKVSSEEN 46 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCc-CcceE-EEEEeeec
Confidence 48999999999 777778899999987655433 34777 77777654
No 296
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=72.45 E-value=9.5 Score=43.71 Aligned_cols=79 Identities=33% Similarity=0.470 Sum_probs=53.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccccCCchhhHHHHHHHHHHHHHHhhhhhHHHHhhhhhhhccCCcc
Q 003882 687 QDVVRMRYDRLRSVAGRIQTVVGDMATQGERFQALLSWRDPRATSLFVIFCLIAAVVLYVTPFKIITLVAGLFWLRHPRF 766 (789)
Q Consensus 687 ~~~~~~~~~~l~~~~~~vq~~l~~~a~~~e~~~~l~~w~~p~~t~~~~~~l~~~~~~~~~iP~r~i~l~~g~~~~~~P~~ 766 (789)
++.++..++++- ..++=-++.+.-.+.-|-+|++|+.|..++.+-+++.++=+++|.-+++|+. .+.+|..
T Consensus 90 pdkLRa~lERlY------~tv~v~~~~~~khi~RLrSW~eprRT~~fc~vYf~aW~~dll~p~~~~~L~~---li~~P~~ 160 (642)
T PF11696_consen 90 PDKLRANLERLY------MTVVVGLAAFIKHIARLRSWREPRRTAAFCAVYFIAWLLDLLVPAFFAFLIA---LILSPPA 160 (642)
T ss_pred hHHHHHHhHhhe------eehHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCccc
Confidence 355555555443 2233344556677778889999999999999988998888888885555443 3456777
Q ss_pred cC-CCCCch
Q 003882 767 RS-KLPSIP 774 (789)
Q Consensus 767 r~-~~p~~~ 774 (789)
|. ..|+.+
T Consensus 161 r~~lFPpap 169 (642)
T PF11696_consen 161 RSILFPPAP 169 (642)
T ss_pred ccccCCCCC
Confidence 75 344444
No 297
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=71.49 E-value=26 Score=33.78 Aligned_cols=54 Identities=7% Similarity=0.019 Sum_probs=35.9
Q ss_pred eeeeccccCCCCCeeccEEEEEccCC--CCceEEEEEEeCCCCC-----CCceeEEEEEEcc
Q 003882 87 KGKTRHFEKKSNPEWKQVFAFSKEKI--QSSVLEVFVRDREIVG-----RDDYIGKVVFDMN 141 (789)
Q Consensus 87 ~~~T~~~~~t~nP~wne~f~f~~~~~--~~~~l~v~V~d~~~~~-----~d~~lG~~~i~l~ 141 (789)
.++|.+..+ .+|.|+|+|.+.+... ....|.|++++...-. ....+|.+.++|-
T Consensus 54 ~~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~ 114 (178)
T cd08679 54 EYTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLM 114 (178)
T ss_pred eEEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEecc
Confidence 345555555 8999999999997322 4688999999876422 2345565554443
No 298
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=67.57 E-value=22 Score=34.50 Aligned_cols=61 Identities=11% Similarity=0.101 Sum_probs=44.7
Q ss_pred EEEeeccccCCCCCccccEEEEEEeC---CCceEEEEEEeCCCCCCC----CCCCCCccEEEEEECcc
Q 003882 416 KWVRTRTLVDNFNPKWNEQYTWEVYD---PCTVITLGVFDNCHLGGS----GTKPDSRIGKVRIRLST 476 (789)
Q Consensus 416 ~~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v~v~d~~~~~~~----~~~~d~~lG~~~i~l~~ 476 (789)
..+.|.+..++.+|.|+|++-+.+.- +...|.|+.++-+.-... .......+|.+.+||.+
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 45788899999999999998887763 467899999997632111 11124678998888877
No 299
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=64.73 E-value=72 Score=34.64 Aligned_cols=109 Identities=16% Similarity=0.104 Sum_probs=63.9
Q ss_pred CcCcEEEEEECCEEEeeccccC----CCCC-cc-ccEEEEEEe--------CC------CceEEEEEEeCCCCCC-CCCC
Q 003882 404 TTDAYCVAKYGLKWVRTRTLVD----NFNP-KW-NEQYTWEVY--------DP------CTVITLGVFDNCHLGG-SGTK 462 (789)
Q Consensus 404 ~~dpyv~v~~~~~~~~T~~~~~----t~~P-~w-ne~~~f~v~--------~~------~~~l~v~v~d~~~~~~-~~~~ 462 (789)
++-+||+|++.+--.+|..+.= +.+| .- +-.-.|.+. .+ ...|+|.||.-..-.. |-+.
T Consensus 35 sspCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~ 114 (460)
T PF06219_consen 35 SSPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGN 114 (460)
T ss_pred CCCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCcccccc
Confidence 4678999999887777776541 1121 11 122333332 11 2589999998543110 1124
Q ss_pred CCCccEEEEEECccccc-C---ceEeeeEeeeecCC-CCCccceEEEEEEEEeec
Q 003882 463 PDSRIGKVRIRLSTLEA-D---RIYTHSYPLLVLNP-SGVKKMGELQLAVRFTCL 512 (789)
Q Consensus 463 ~d~~lG~~~i~l~~l~~-~---~~~~~~~~L~~~~~-~g~~~~G~i~l~~~f~~~ 512 (789)
...+||++.|+|.--.. + .-+..|..+-..+. .+.+...++||.++.+|.
T Consensus 115 ~~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpD 169 (460)
T PF06219_consen 115 SGKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPD 169 (460)
T ss_pred cceEEEEEEEEeccccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccCC
Confidence 66899999999874221 1 23578888843322 122235799999987754
No 300
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=64.42 E-value=22 Score=34.36 Aligned_cols=58 Identities=14% Similarity=0.217 Sum_probs=40.6
Q ss_pred EeeccccCCCCCccccEEEEEEeC---CCceEEEEEEeCCCCCCCCCCCCCccEEEEEECcc
Q 003882 418 VRTRTLVDNFNPKWNEQYTWEVYD---PCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLST 476 (789)
Q Consensus 418 ~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~ 476 (789)
++|-+..+ .+|.|+|+|.+.+.. +...|.|++++-+.-...+......+|.+.+||-+
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 44444444 899999999998863 36789999999664210011346789999999887
No 301
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=63.86 E-value=18 Score=39.42 Aligned_cols=46 Identities=20% Similarity=0.435 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhhH---HHHHhccccCCchhhHHHHHHHHHHHHHHhh
Q 003882 701 AGRIQTVVGDMATQG---ERFQALLSWRDPRATSLFVIFCLIAAVVLYV 746 (789)
Q Consensus 701 ~~~vq~~l~~~a~~~---e~~~~l~~w~~p~~t~~~~~~l~~~~~~~~~ 746 (789)
..++-..|+.+-.++ +++.++++|++|..|..+++++...++..++
T Consensus 12 ~~~l~~~l~~~f~~~~~~d~vl~il~W~~p~~t~~~L~l~t~~~l~p~l 60 (359)
T PF06398_consen 12 FPRLSSRLGPIFPFQLILDRVLRILTWTNPDYTLSFLLLYTFLCLNPYL 60 (359)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHeEEeCCCCcchHHHHHHHHHHHHHHH
Confidence 334555556666666 8899999999998876665555555544443
No 302
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=61.53 E-value=40 Score=36.50 Aligned_cols=105 Identities=17% Similarity=0.281 Sum_probs=61.2
Q ss_pred CCcEEEEEECCeeeeeccccCCC----CC-e---eccEEEEEccCC-----------CCceEEEEEEeCCC-----C-CC
Q 003882 75 CDPYVEVKLGNYKGKTRHFEKKS----NP-E---WKQVFAFSKEKI-----------QSSVLEVFVRDREI-----V-GR 129 (789)
Q Consensus 75 ~dpyv~v~~~~~~~~T~~~~~t~----nP-~---wne~f~f~~~~~-----------~~~~l~v~V~d~~~-----~-~~ 129 (789)
+..||+|++.+...+|..+---. +| . ---.|+++-.++ ....|+|.||.-.. + .+
T Consensus 36 spCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~~ 115 (460)
T PF06219_consen 36 SPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGNS 115 (460)
T ss_pred CCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCccccccc
Confidence 45699999998655554432211 11 1 223566652211 12579999998432 2 46
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCC--ccceEEEEEEEEe
Q 003882 130 DDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDR--KVKGEVMLAVWIG 180 (789)
Q Consensus 130 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~--~~~G~l~l~~~~~ 180 (789)
..+||.+.++|. +.........+...|..+-.....+ ....+|++.+...
T Consensus 116 ~klLG~v~vpld-l~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~E 167 (460)
T PF06219_consen 116 GKLLGKVRVPLD-LKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAE 167 (460)
T ss_pred ceEEEEEEEEec-cccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEecc
Confidence 689999999987 3322222233456899997765322 2356777766543
No 303
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=61.37 E-value=41 Score=37.94 Aligned_cols=99 Identities=19% Similarity=0.276 Sum_probs=70.1
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCC
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGSGT 461 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~~ 461 (789)
.+.|.|.+.+||.... .+-=.||...+.+.+.+|.... ...|.|.-+-.|.-.+|-..+++.+|.+..- .-.
T Consensus 342 smevvvmevqglksva-----pnrivyctmevegeklqtdqae-askp~wgtqgdfstthplpvvkvklftestg--vla 413 (1218)
T KOG3543|consen 342 SMEVVVMEVQGLKSVA-----PNRIVYCTMEVEGEKLQTDQAE-ASKPKWGTQGDFSTTHPLPVVKVKLFTESTG--VLA 413 (1218)
T ss_pred eeeEEEeeeccccccC-----CCeeEEEEEEecccccccchhh-hcCCCCCcCCCcccCCCCceeEEEEEeecce--eEE
Confidence 6788899999997542 2234699999999999887654 4479999988888888888999999987641 112
Q ss_pred CCCCccEEEEEECcccccCceEeeeEeee
Q 003882 462 KPDSRIGKVRIRLSTLEADRIYTHSYPLL 490 (789)
Q Consensus 462 ~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 490 (789)
-.|.-||++.+.-..=.. ....|+.+.
T Consensus 414 ledkelgrvil~ptpns~--ks~ewh~mt 440 (1218)
T KOG3543|consen 414 LEDKELGRVILQPTPNSA--KSPEWHTMT 440 (1218)
T ss_pred eechhhCeEEEecCCCCc--CCccceeee
Confidence 367889999885443222 224555554
No 304
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=59.57 E-value=27 Score=33.63 Aligned_cols=40 Identities=8% Similarity=0.003 Sum_probs=32.2
Q ss_pred eeeeccccCCCCCeeccEEEEEccC--CCCceEEEEEEeCCC
Q 003882 87 KGKTRHFEKKSNPEWKQVFAFSKEK--IQSSVLEVFVRDREI 126 (789)
Q Consensus 87 ~~~T~~~~~t~nP~wne~f~f~~~~--~~~~~l~v~V~d~~~ 126 (789)
...|.|...+.+|.|+|++.+.+.. .....|.|+.++.+.
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~ 96 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISC 96 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeec
Confidence 5688999999999999999998732 246789999988554
No 305
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=59.00 E-value=1.2e+02 Score=32.00 Aligned_cols=111 Identities=16% Similarity=0.297 Sum_probs=78.0
Q ss_pred eeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCC--eeccEEEEEccCCCCceEEEEEEeCCCCCCC
Q 003882 53 MFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNP--EWKQVFAFSKEKIQSSVLEVFVRDREIVGRD 130 (789)
Q Consensus 53 ~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP--~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d 130 (789)
...|-|.|.+..++.. ...-|+.+..+....+|..+.-+..- .-+|.....+..- +.+|++.||-.... +.
T Consensus 57 kF~LLVeI~EI~~i~k-----~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQc-DnTLkI~lfKKkLv-kk 129 (508)
T PTZ00447 57 TFYLLVKINEIFNINK-----YKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQC-DETLRVDLFTTKLT-KK 129 (508)
T ss_pred eeeEEEEehhhhcccc-----ceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeec-CceEEEEEEecccc-ce
Confidence 3889999999877753 45789999999988888555443322 3344444444443 68999999988765 78
Q ss_pred ceeEEEEEEccc-cC-CCCCCCCCCCCeeEEcccCCCCCccceEEEEEEE
Q 003882 131 DYIGKVVFDMNE-VP-TRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVW 178 (789)
Q Consensus 131 ~~lG~~~i~l~~-l~-~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~ 178 (789)
.-||.+.+.+.. +. ..-+.. .||.+..- | ...+.|.+|++
T Consensus 130 ~hIgdI~InIn~dIIdk~FPKn-----kWy~c~kD-G--q~~cRIqLSFh 171 (508)
T PTZ00447 130 VHIGQIKIDINASVISKSFPKN-----EWFVCFKD-G--QEICKVQMSFY 171 (508)
T ss_pred eEEEEEEecccHHHHhccCCcc-----ceEEEecC-C--ceeeeEEEEeh
Confidence 899999999874 33 333444 89999443 3 45788888875
No 306
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=56.76 E-value=1.3e+02 Score=31.72 Aligned_cols=108 Identities=11% Similarity=0.117 Sum_probs=72.4
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCC--ccccEEEEEEeCCCceEEEEEEeCCCCCCC
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNP--KWNEQYTWEVYDPCTVITLGVFDNCHLGGS 459 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P--~wne~~~f~v~~~~~~l~v~v~d~~~~~~~ 459 (789)
.|-|.|.+..++.. ...-|+.++.|...++|..+.-+..= .-.+.....++.-...|+|.||-....
T Consensus 59 ~LLVeI~EI~~i~k--------~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLv--- 127 (508)
T PTZ00447 59 YLLVKINEIFNINK--------YKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLT--- 127 (508)
T ss_pred eEEEEehhhhcccc--------ceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEecccc---
Confidence 67778877777653 45679999999999999665422211 223445555555567999999997765
Q ss_pred CCCCCCccEEEEEECcc-cc-cCceEeeeEeeeecCCCCCccceEEEEEE
Q 003882 460 GTKPDSRIGKVRIRLST-LE-ADRIYTHSYPLLVLNPSGVKKMGELQLAV 507 (789)
Q Consensus 460 ~~~~d~~lG~~~i~l~~-l~-~~~~~~~~~~L~~~~~~g~~~~G~i~l~~ 507 (789)
+..-||.+.|.+.. +. ..-+-..||-+.. .|. ..++|.|++
T Consensus 128 ---kk~hIgdI~InIn~dIIdk~FPKnkWy~c~k---DGq-~~cRIqLSF 170 (508)
T PTZ00447 128 ---KKVHIGQIKIDINASVISKSFPKNEWFVCFK---DGQ-EICKVQMSF 170 (508)
T ss_pred ---ceeEEEEEEecccHHHHhccCCccceEEEec---CCc-eeeeEEEEe
Confidence 67799999999887 22 2234578999852 232 347777664
No 307
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=55.93 E-value=37 Score=32.90 Aligned_cols=40 Identities=10% Similarity=0.041 Sum_probs=32.5
Q ss_pred eeeeeccccCCCCCeeccEEEEEcc--CCCCceEEEEEEeCC
Q 003882 86 YKGKTRHFEKKSNPEWKQVFAFSKE--KIQSSVLEVFVRDRE 125 (789)
Q Consensus 86 ~~~~T~~~~~t~nP~wne~f~f~~~--~~~~~~l~v~V~d~~ 125 (789)
....|.|..++.+|.|+|++.+.+. -.....|.|+.++.+
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 3568899999999999999999873 234678999999865
No 308
>PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains [].
Probab=53.00 E-value=30 Score=27.81 Aligned_cols=48 Identities=25% Similarity=0.318 Sum_probs=34.1
Q ss_pred ccccCCCCCCCCCCCCeeEEcccCCCCC-ccceEEEEEEEEeecCCCcCCc
Q 003882 140 MNEVPTRVPPDSPLAPQWYRLEDRRDDR-KVKGEVMLAVWIGTQADEAFPE 189 (789)
Q Consensus 140 l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~~~~~d~~~~~ 189 (789)
+..+..+. ++.....|..|.++.... ..+|.|.+++.+..++|+....
T Consensus 3 lgtVY~qP--~H~~~~KW~~L~dP~D~~~G~kGYlKv~i~Vlg~GD~~~~~ 51 (72)
T PF08151_consen 3 LGTVYNQP--DHQFYRKWALLTDPDDTSAGVKGYLKVDISVLGPGDEPPVE 51 (72)
T ss_pred eeeeecCC--CCeeEeceEEecCCCCCccCCceEEEEEEEEEcCCCcCCCC
Confidence 44444443 345666999999887543 5799999999999888765443
No 309
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=49.45 E-value=5.7 Score=45.50 Aligned_cols=95 Identities=12% Similarity=0.124 Sum_probs=64.5
Q ss_pred CCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCC
Q 003882 74 SCDPYVEVKLGNY-KGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSP 152 (789)
Q Consensus 74 ~~dpyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~ 152 (789)
..+||+.|.+.-. ...+.+...+..|.|+++|...+.. ...+.|.|+.......+.+...+++..+++.... .
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~--~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~----~ 100 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA--GGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLA----L 100 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeeec--CCceEEEEEecCCcchhhHHHhHHHHHHHHHHHh----h
Confidence 4689999888754 3456667789999999999999766 4788999998776555655666665555555321 1
Q ss_pred CCCeeEEcccCCCCCccceEEEEEEEEee
Q 003882 153 LAPQWYRLEDRRDDRKVKGEVMLAVWIGT 181 (789)
Q Consensus 153 ~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 181 (789)
....|..++. .|.+...+.+..
T Consensus 101 ~~~~w~~~~~-------~g~~~~~~~~~~ 122 (694)
T KOG0694|consen 101 EQRLWVLIEE-------LGTLLKPAALTG 122 (694)
T ss_pred hhhhcccccc-------ccceeeeecccC
Confidence 1226777443 477777766654
No 310
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.01 E-value=76 Score=31.96 Aligned_cols=39 Identities=10% Similarity=-0.042 Sum_probs=29.1
Q ss_pred HHHhhhHHHHHhccccCCchhhHHHHHHHHHHHHHHhhh
Q 003882 709 GDMATQGERFQALLSWRDPRATSLFVIFCLIAAVVLYVT 747 (789)
Q Consensus 709 ~~~a~~~e~~~~l~~w~~p~~t~~~~~~l~~~~~~~~~i 747 (789)
..++..+-.++.++.=+|+..+..+.+.+++.+.+..+.
T Consensus 131 ~~in~~l~~l~~ia~~~d~~~~lk~~v~lw~lS~vGs~f 169 (230)
T KOG1792|consen 131 VEINQALSELRDIALGRDLKDFLKVAVGLWILSYVGSLF 169 (230)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhh
Confidence 356666777778888888888888888888777766443
No 311
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=43.82 E-value=9 Score=43.96 Aligned_cols=93 Identities=13% Similarity=0.053 Sum_probs=58.2
Q ss_pred CcCcEEEEEECCEE-EeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCCCCCCccEEEEEECccccc-Cc
Q 003882 404 TTDAYCVAKYGLKW-VRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEA-DR 481 (789)
Q Consensus 404 ~~dpyv~v~~~~~~-~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~-~~ 481 (789)
..|||+-|.+..+. ..+.+.+.+..|.||+.|..+|.. ...+.|.|+...... .+.+...+.+-.+++.. ..
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~-~~~~~i~v~~~~~~~-----~~~~~a~~~~~~e~~k~~~~ 100 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA-GGAKNIIVLLKSPDP-----KALSEAQLSLQEESQKLLAL 100 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeeec-CCceEEEEEecCCcc-----hhhHHHhHHHHHHHHHHHhh
Confidence 46899999886544 466677789999999999999664 667888889865432 33444444444444332 12
Q ss_pred eEeeeEeeeecCCCCCccceEEEEEEEEe
Q 003882 482 IYTHSYPLLVLNPSGVKKMGELQLAVRFT 510 (789)
Q Consensus 482 ~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 510 (789)
....|..+. ..|++...+.+.
T Consensus 101 ~~~~w~~~~--------~~g~~~~~~~~~ 121 (694)
T KOG0694|consen 101 EQRLWVLIE--------ELGTLLKPAALT 121 (694)
T ss_pred hhhhccccc--------cccceeeeeccc
Confidence 234566543 236666555443
No 312
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=43.79 E-value=2.3e+02 Score=26.98 Aligned_cols=79 Identities=18% Similarity=0.174 Sum_probs=53.7
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEC--C--------e-eeeecccc-----CCCCCeeccEEEEEc--cCCC-Cce
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLG--N--------Y-KGKTRHFE-----KKSNPEWKQVFAFSK--EKIQ-SSV 116 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~--~--------~-~~~T~~~~-----~t~nP~wne~f~f~~--~~~~-~~~ 116 (789)
+.=.|..|.+.. ..+-||+..+. + . ...|.+.. ++..-.||.-|.+.. ..+. -+.
T Consensus 4 v~G~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~ 77 (168)
T PF07162_consen 4 VIGEIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQ 77 (168)
T ss_pred EEEEEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCce
Confidence 444677777654 23668887663 1 2 34444433 234578999887775 3333 379
Q ss_pred EEEEEEeCCCCCCCceeEEEEEEc
Q 003882 117 LEVFVRDREIVGRDDYIGKVVFDM 140 (789)
Q Consensus 117 l~v~V~d~~~~~~d~~lG~~~i~l 140 (789)
|.|+||..|..+++.+.|...+.|
T Consensus 78 L~l~V~~~D~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 78 LVLQVYSLDSWGRDRVEGYGFCHL 101 (168)
T ss_pred EEEEEEEEcccCCeEEeEEeEEEe
Confidence 999999999999999998887766
No 313
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.63 E-value=55 Score=28.66 Aligned_cols=18 Identities=17% Similarity=0.305 Sum_probs=13.0
Q ss_pred chhHHHHHHHHHHHHHHH
Q 003882 687 QDVVRMRYDRLRSVAGRI 704 (789)
Q Consensus 687 ~~~~~~~~~~l~~~~~~v 704 (789)
-+++.+++.+|+.....+
T Consensus 38 ~e~L~~kV~aLKsLs~dI 55 (118)
T KOG3385|consen 38 AESLQQKVKALKSLSLDI 55 (118)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 466788888888766655
No 314
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=42.21 E-value=52 Score=39.09 Aligned_cols=17 Identities=18% Similarity=0.479 Sum_probs=12.5
Q ss_pred HHhhhhhHHHHhhhhhh
Q 003882 743 VLYVTPFKIITLVAGLF 759 (789)
Q Consensus 743 ~~~~iP~r~i~l~~g~~ 759 (789)
-++|||.+|++|++-.|
T Consensus 90 ~~~~~p~~~~~~~~~~~ 106 (697)
T PF09726_consen 90 CLFFIPVHWLFFAASTY 106 (697)
T ss_pred HHHHHHHHHHHHHHhHH
Confidence 34568999999986544
No 315
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=39.41 E-value=8.3 Score=43.38 Aligned_cols=60 Identities=20% Similarity=0.195 Sum_probs=44.7
Q ss_pred cEEEEEEEEccCCCCCccC-CCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeC
Q 003882 381 GILEVGILSAQGLLPMKTR-DGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYD 441 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~-~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~ 441 (789)
|..-++++.|.++++.... ...-..++++...++.+.+||....++.+|+|||. .+++.+
T Consensus 280 gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~ 340 (975)
T KOG2419|consen 280 GIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSD 340 (975)
T ss_pred hhHHHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhccccccccccc-cccccc
Confidence 5666677778777543221 01225789999999999999999999999999997 665554
No 316
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=37.61 E-value=1.6e+02 Score=35.18 Aligned_cols=103 Identities=17% Similarity=0.237 Sum_probs=63.8
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE----CCEE----EeeccccCCCCCccccEEEEEEeC---C-CceEEE
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY----GLKW----VRTRTLVDNFNPKWNEQYTWEVYD---P-CTVITL 448 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~----~~~~----~~T~~~~~t~~P~wne~~~f~v~~---~-~~~l~v 448 (789)
..++|+++.+.++-. ....|-+|.|+. |++. ..|.-+..+.+|.||+.++|++.- | ...|-|
T Consensus 343 ~~frI~l~~is~~n~------~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~ 416 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVNL------PETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCL 416 (1076)
T ss_pred CceEEEEeeccccCC------CcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhhee
Confidence 368888888887632 234566777655 5544 344445557899999999998873 3 456666
Q ss_pred EEEeCC---CCC--------CCCCCCCCccEEEEEECcc----cccCceEeeeEee
Q 003882 449 GVFDNC---HLG--------GSGTKPDSRIGKVRIRLST----LEADRIYTHSYPL 489 (789)
Q Consensus 449 ~v~d~~---~~~--------~~~~~~d~~lG~~~i~l~~----l~~~~~~~~~~~L 489 (789)
.||.-- ..+ .+.+..+..+|.+.+.|-+ |..|+-.-+-|+.
T Consensus 417 ~i~~v~~~~~s~~~s~~~~~kk~k~~~~plaWvN~~lfD~kd~LrtG~~~Lh~W~~ 472 (1076)
T KOG0904|consen 417 AIYAVKAKAKSKKNSAESTKKKSKKEHCPLAWVNLMLFDHKDQLRTGEYVLHMWPS 472 (1076)
T ss_pred eeeEeechhccccccchhhhhccccccCceEEEeeeeeechhhhhcCceEEEecCC
Confidence 666531 110 0123456789999888876 4456544444443
No 317
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=37.48 E-value=11 Score=35.88 Aligned_cols=29 Identities=24% Similarity=0.557 Sum_probs=0.0
Q ss_pred HHhccccCCchhhHHHHHHHHHHHHHHhh
Q 003882 718 FQALLSWRDPRATSLFVIFCLIAAVVLYV 746 (789)
Q Consensus 718 ~~~l~~w~~p~~t~~~~~~l~~~~~~~~~ 746 (789)
+++++.|+||..|..++.++.++.+++.+
T Consensus 1 V~dll~W~~~~~S~~v~~~~~~~~~l~~~ 29 (169)
T PF02453_consen 1 VADLLLWRDPKKSGIVFGAILLFWLLFWL 29 (169)
T ss_dssp -----------------------------
T ss_pred CceeeEecCCCchHHHHHHHHHHHHHHHH
Confidence 46789999999998877776664444433
No 318
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=37.19 E-value=2.8e+02 Score=26.36 Aligned_cols=81 Identities=21% Similarity=0.209 Sum_probs=54.1
Q ss_pred EEEEEEEccCCCCCccCCCCCCcCcEEEEEE--CC--------E-EEeeccccC-----CCCCccccEEEEEEeC--C--
Q 003882 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKY--GL--------K-WVRTRTLVD-----NFNPKWNEQYTWEVYD--P-- 442 (789)
Q Consensus 383 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~--~~--------~-~~~T~~~~~-----t~~P~wne~~~f~v~~--~-- 442 (789)
+.=.|..|++.. ..+-||+-.+ |. . ...|.+.+. ...-.||.-|.+.... +
T Consensus 4 v~G~I~~a~~f~---------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~g 74 (168)
T PF07162_consen 4 VIGEIESAEGFE---------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQG 74 (168)
T ss_pred EEEEEEEEECCC---------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCC
Confidence 444677787664 3356888655 32 2 355555432 3456799887776653 3
Q ss_pred CceEEEEEEeCCCCCCCCCCCCCccEEEEEECccc
Q 003882 443 CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTL 477 (789)
Q Consensus 443 ~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l 477 (789)
-..|.|+||..|..+ ++.+.|...+.|..-
T Consensus 75 wP~L~l~V~~~D~~g-----r~~~~GYG~~~lP~~ 104 (168)
T PF07162_consen 75 WPQLVLQVYSLDSWG-----RDRVEGYGFCHLPTQ 104 (168)
T ss_pred CceEEEEEEEEcccC-----CeEEeEEeEEEeCCC
Confidence 359999999999986 788998887776543
No 319
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=33.71 E-value=11 Score=42.35 Aligned_cols=59 Identities=8% Similarity=-0.095 Sum_probs=43.1
Q ss_pred eEEEEEEEEeeCCCCC--C--CCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCC
Q 003882 54 FYLYVRVEKARDLPTN--P--VSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQ 113 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~--~--~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~ 113 (789)
|...++++.|.+++.- + ..-.-++++.+.++.+.++|+....+.+|+|||. .+...+.+
T Consensus 280 gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~Fq 342 (975)
T KOG2419|consen 280 GIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSDFQ 342 (975)
T ss_pred hhHHHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhccccccccccc-ccccccch
Confidence 5555666666666421 1 1234689999999999999999999999999998 66655543
No 320
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=33.45 E-value=53 Score=38.06 Aligned_cols=61 Identities=21% Similarity=0.411 Sum_probs=41.7
Q ss_pred HHHHHHHHhhhHHHHHhccccCCchhhHHHHHHHHHHHH---HHhhhhhHHHHhhhhhhhccCC
Q 003882 704 IQTVVGDMATQGERFQALLSWRDPRATSLFVIFCLIAAV---VLYVTPFKIITLVAGLFWLRHP 764 (789)
Q Consensus 704 vq~~l~~~a~~~e~~~~l~~w~~p~~t~~~~~~l~~~~~---~~~~iP~r~i~l~~g~~~~~~P 764 (789)
.+.+|-=+..+...++.+..|.+|..|..|+++.+.+.. +-|++|.-+++++.+....|+-
T Consensus 492 ~kELL~Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~~ 555 (683)
T PF04842_consen 492 MKELLFPLIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRYQ 555 (683)
T ss_pred HHhccccHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355555667788889999999999999776555443332 5567787666666555555553
No 321
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=32.60 E-value=21 Score=42.11 Aligned_cols=88 Identities=24% Similarity=0.400 Sum_probs=59.4
Q ss_pred ccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE---C--CEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCC
Q 003882 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY---G--LKWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNC 454 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~---~--~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~ 454 (789)
.|.+.+.+.+|.+|.. ...-||.... | ..+.+|+++.+|..|.||++++.++.. .+...+..++.+
T Consensus 758 ygflh~~vhsat~lkq--------s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~-sqS~r~~~~ek~ 828 (1112)
T KOG4269|consen 758 YGFLHVIVHSATGLKQ--------SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIE-SQSSRLEKTEKS 828 (1112)
T ss_pred ccceeeeecccccccc--------ccceeeehhhhhhccccccccceeeecccCCCCChhcccchhh-ccccchhhhccc
Confidence 4899999999999974 3456888754 3 456899999999999999999988765 333445555544
Q ss_pred CCC----CC-CCCCCCccEEEEEECcc
Q 003882 455 HLG----GS-GTKPDSRIGKVRIRLST 476 (789)
Q Consensus 455 ~~~----~~-~~~~d~~lG~~~i~l~~ 476 (789)
.-- +. .-..+...|+.++.+.-
T Consensus 829 ~~~~k~~~~~~~~~~~~~~~~~~~l~~ 855 (1112)
T KOG4269|consen 829 TPVEKLIDSHSQNSQNEEKRSRMKLDP 855 (1112)
T ss_pred chHHHhhhccchhhcccccccccccCc
Confidence 310 00 11245566666665544
No 322
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=32.04 E-value=3.8e+02 Score=24.11 Aligned_cols=88 Identities=14% Similarity=0.214 Sum_probs=52.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCeEEEEEECCeEE-eeecccCCCCCCcc-CceeEEEee--CCCCCeEEEEEEEccC-CCC
Q 003882 219 LRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVL-KTKLCPTRTTNPLW-NEDLIFVAA--EPFEEQLVLTVENKVT-PAK 293 (789)
Q Consensus 219 L~V~v~~ar~L~~~~~~~~~dpyv~v~l~~~~~-kT~~~~~~t~nP~w-ne~f~f~~~--~~~~~~l~i~V~d~d~-~~~ 293 (789)
|.+.-+.-.++|..+..+.+.||++|+-+++.. .+..... . .... ...+.+.+. -+....+.|.+++... ...
T Consensus 6 l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~-~-~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~~ 83 (134)
T PF10409_consen 6 LFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYE-D-PKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSMS 83 (134)
T ss_dssp EEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCC-C-CCEEETTCEEEEEEEEEEEESEEEEEEEECETTECC
T ss_pred EEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEecccee-c-cccccceeEEEEeCCCCeEeCCEEEEEEeCCCcccc
Confidence 455555557777666667899999999888665 3333322 1 1121 223333332 2235678888988763 445
Q ss_pred CCceEEEEEeccccc
Q 003882 294 DEPLGRLRLSLNVIE 308 (789)
Q Consensus 294 d~~iG~~~i~l~~l~ 308 (789)
++.+.++.+.-.-+.
T Consensus 84 ~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 84 KEKMFRFWFNTGFIE 98 (134)
T ss_dssp CEEEEEEEEEGGGSB
T ss_pred cCeEEEEEEeeeeee
Confidence 667888888766553
No 323
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=31.42 E-value=1.2e+02 Score=26.73 Aligned_cols=63 Identities=22% Similarity=0.263 Sum_probs=41.2
Q ss_pred CceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccc--------------cCceEeeeEeeeecCCCCCccceEEEEEEE
Q 003882 443 CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLE--------------ADRIYTHSYPLLVLNPSGVKKMGELQLAVR 508 (789)
Q Consensus 443 ~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~--------------~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 508 (789)
...|++.+++-..- .......+||.+.|++.+.. .....+..|+|.+. .|. ..|+|.+.++
T Consensus 28 ~~pl~i~~~~~~~~--~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~--~~~-~~G~I~l~iR 102 (112)
T PF14924_consen 28 SFPLYIVVKKVPPG--FPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDE--NGN-PVGEISLYIR 102 (112)
T ss_pred CCceEEEEEecCCC--CCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecC--CCc-eeeeEEEEEE
Confidence 34677766653220 00125678999999999865 12256788999864 333 5699999888
Q ss_pred Ee
Q 003882 509 FT 510 (789)
Q Consensus 509 f~ 510 (789)
..
T Consensus 103 Ls 104 (112)
T PF14924_consen 103 LS 104 (112)
T ss_pred Ee
Confidence 75
No 324
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.82 E-value=1.4e+02 Score=26.33 Aligned_cols=36 Identities=11% Similarity=0.302 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHhccccCCchhhHH
Q 003882 697 LRSVAGRIQTVVGDMATQGERFQALLSWRDPRATSL 732 (789)
Q Consensus 697 l~~~~~~vq~~l~~~a~~~e~~~~l~~w~~p~~t~~ 732 (789)
|++-+..+|..-..+-...-+++--+-|.+-+....
T Consensus 62 L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~i 97 (116)
T KOG0860|consen 62 LDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRII 97 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444555556666788888665543
No 325
>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.96 E-value=5.2e+02 Score=25.12 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhcchhHHHH
Q 003882 617 ILVHVLFLILICYPELILPTI 637 (789)
Q Consensus 617 ~~~~~~~~~~~~~~~l~~p~~ 637 (789)
+.+.++++.++|+|..++.++
T Consensus 76 iv~~~~~~sLi~~P~~Livl~ 96 (187)
T KOG3142|consen 76 IVAILLFLSLITHPLSLIVLL 96 (187)
T ss_pred HHHHHHHHHHHHhHHHHHHHH
Confidence 444566677788877644333
No 326
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=29.73 E-value=1.4e+02 Score=24.81 Aligned_cols=33 Identities=6% Similarity=0.248 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHhccccCCchhh
Q 003882 698 RSVAGRIQTVVGDMATQGERFQALLSWRDPRAT 730 (789)
Q Consensus 698 ~~~~~~vq~~l~~~a~~~e~~~~l~~w~~p~~t 730 (789)
.+-+..++..-+.+.....+++.-+-|+.-+..
T Consensus 37 ~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~ 69 (89)
T PF00957_consen 37 EDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLY 69 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444455555666667664443
No 327
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=29.54 E-value=74 Score=35.01 Aligned_cols=43 Identities=12% Similarity=0.300 Sum_probs=31.0
Q ss_pred eeEEEEEEccc-cCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEe
Q 003882 132 YIGKVVFDMNE-VPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIG 180 (789)
Q Consensus 132 ~lG~~~i~l~~-l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 180 (789)
.+|.+.|++.. +..+...+ .||++.+....+...|.+ +.+.|.
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e-----~w~~i~~~~~~~~~~~~l-lk~~~~ 44 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKE-----TWLPIFDVDNKSVGEGLI-IKVSSE 44 (395)
T ss_pred CeeEEEeehhhhccCCCCce-----eeeccccCCCCCcCcceE-EEEEee
Confidence 48999999999 55555555 999999876554455666 566654
No 328
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=29.07 E-value=5.4e+02 Score=29.52 Aligned_cols=115 Identities=21% Similarity=0.306 Sum_probs=74.8
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCC---CCC
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIV---GRD 130 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~---~~d 130 (789)
..+.|.|.+..+|+.... ..=.||...+.+++.+|.-.. ..-|.|+..=.|....+. ..+.+.+|..... -.|
T Consensus 341 ~smevvvmevqglksvap--nrivyctmevegeklqtdqae-askp~wgtqgdfstthpl-pvvkvklftestgvlaled 416 (1218)
T KOG3543|consen 341 LSMEVVVMEVQGLKSVAP--NRIVYCTMEVEGEKLQTDQAE-ASKPKWGTQGDFSTTHPL-PVVKVKLFTESTGVLALED 416 (1218)
T ss_pred eeeeEEEeeeccccccCC--CeeEEEEEEecccccccchhh-hcCCCCCcCCCcccCCCC-ceeEEEEEeecceeEEeec
Confidence 457788888888876432 234699999999887776543 458999998888877663 7888888876541 135
Q ss_pred ceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEE
Q 003882 131 DYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWI 179 (789)
Q Consensus 131 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 179 (789)
.-||.+.+. ..+..+..+.|+.+.-+.......-.|.+.+.+
T Consensus 417 kelgrvil~-------ptpns~ks~ewh~mtvpknsqdqdlkiklavrm 458 (1218)
T KOG3543|consen 417 KELGRVILQ-------PTPNSAKSPEWHTMTVPKNSQDQDLKIKLAVRM 458 (1218)
T ss_pred hhhCeEEEe-------cCCCCcCCccceeeecCCCCcCccceEEEEEec
Confidence 566766553 223344455899987665432333445555544
No 329
>PRK09458 pspB phage shock protein B; Provisional
Probab=26.77 E-value=1.9e+02 Score=23.38 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003882 693 RYDRLRSVAGRIQTVVGDM 711 (789)
Q Consensus 693 ~~~~l~~~~~~vq~~l~~~ 711 (789)
+++.|.+.+.+.|.-++.+
T Consensus 43 ~L~~L~~~A~rm~~RI~tL 61 (75)
T PRK09458 43 RLAQLTEKAERMRERIQAL 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555443
No 330
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=26.12 E-value=5.2e+02 Score=23.80 Aligned_cols=88 Identities=10% Similarity=0.046 Sum_probs=63.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEc------------cCCCCceEEEEEEe
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSK------------EKIQSSVLEVFVRD 123 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~------------~~~~~~~l~v~V~d 123 (789)
|.|+-+.+-+.--.+ +.|-|..|++-++.++|+-..-.-==.++|.|.|.- ..++...+.++++.
T Consensus 4 L~i~aVTCPGv~L~~---~~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQ 80 (140)
T PF14909_consen 4 LEIHAVTCPGVWLCD---KGDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQ 80 (140)
T ss_pred EEEEEEecCCeEeCC---CCCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEE
Confidence 556666665543332 458999999999999998665444445699999972 22357889999988
Q ss_pred CCCCCCCceeEEEEEEccccCCCC
Q 003882 124 REIVGRDDYIGKVVFDMNEVPTRV 147 (789)
Q Consensus 124 ~~~~~~d~~lG~~~i~l~~l~~~~ 147 (789)
...-. ...|+..+-++.++..-.
T Consensus 81 l~~~~-g~iLA~ye~n~rDfLfP~ 103 (140)
T PF14909_consen 81 LVPPA-GEILAYYEENTRDFLFPE 103 (140)
T ss_pred EeCCC-CcEEEEEeccccceEcCC
Confidence 76643 778898888888877643
No 331
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=24.59 E-value=5.2e+02 Score=23.22 Aligned_cols=90 Identities=12% Similarity=0.106 Sum_probs=54.8
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEE-eeccccCCCCCccccEEEEEEeC--C-CceEEEEEEeCCCCC
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWV-RTRTLVDNFNPKWNEQYTWEVYD--P-CTVITLGVFDNCHLG 457 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~-~T~~~~~t~~P~wne~~~f~v~~--~-~~~l~v~v~d~~~~~ 457 (789)
.|.+.=+.-.++|.. +.++.+.||++|.-+++.. .|........-.=...+.+.+.. + ...+.|.+++.+...
T Consensus 5 ~l~L~~I~l~~iP~f---~~~~gc~p~i~I~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~ 81 (134)
T PF10409_consen 5 PLFLKSIILHGIPNF---NSGGGCRPYIEIYNGGKKVFSTSKSYEDPKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSS 81 (134)
T ss_dssp EEEEEEEEEES-TTS---TTSSCCTEEEEEEETTEEEEETCCTCCCCCEEETTCEEEEEEEEEEEESEEEEEEEECETTE
T ss_pred eEEEEEEEEECCCcc---CCCCCEEEEEEEECCCccEEEeccceeccccccceeEEEEeCCCCeEeCCEEEEEEeCCCcc
Confidence 455555556677765 3356899999999988776 44443332211111223443332 2 568899999976311
Q ss_pred CCCCCCCCccEEEEEECcccc
Q 003882 458 GSGTKPDSRIGKVRIRLSTLE 478 (789)
Q Consensus 458 ~~~~~~d~~lG~~~i~l~~l~ 478 (789)
..+..+.++.+.-.-+.
T Consensus 82 ----~~~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 82 ----MSKEKMFRFWFNTGFIE 98 (134)
T ss_dssp ----CCCEEEEEEEEEGGGSB
T ss_pred ----cccCeEEEEEEeeeeee
Confidence 15678999999988887
No 332
>PF14963 CAML: Calcium signal-modulating cyclophilin ligand
Probab=24.29 E-value=3.6e+02 Score=27.22 Aligned_cols=31 Identities=19% Similarity=0.331 Sum_probs=19.3
Q ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhhccc
Q 003882 620 HVLFLILICYPELILPTIFLYMFLIGIWNYR 650 (789)
Q Consensus 620 ~~~~~~~~~~~~l~~p~~~l~l~~~~~~~~~ 650 (789)
+++=.++|-|..++.|++.+-++..++..|.
T Consensus 172 v~VR~fvCkyLsi~~pfl~l~l~~~gl~~~~ 202 (263)
T PF14963_consen 172 VFVRLFVCKYLSIFAPFLTLQLAYMGLSKYF 202 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchhhc
Confidence 4444566766666677777766656656554
No 333
>PF08653 DASH_Dam1: DASH complex subunit Dam1; InterPro: IPR013962 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=24.16 E-value=3.3e+02 Score=20.88 Aligned_cols=47 Identities=9% Similarity=0.117 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccccCCchhhHHHHHHHHHH
Q 003882 691 RMRYDRLRSVAGRIQTVVGDMATQGERFQALLSWRDPRATSLFVIFCLIA 740 (789)
Q Consensus 691 ~~~~~~l~~~~~~vq~~l~~~a~~~e~~~~l~~w~~p~~t~~~~~~l~~~ 740 (789)
..++..|.+.+..++.-|.++..++|.+.+ +...+++.+..+.+-..
T Consensus 4 ~~~f~eL~D~~~~L~~n~~~L~~ihesL~~---FNESFasfLYGl~mna~ 50 (58)
T PF08653_consen 4 EPQFAELSDSMETLDKNMEQLNQIHESLSD---FNESFASFLYGLNMNAW 50 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 445677777777888888888888888877 55666666544444333
No 334
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=24.05 E-value=1.2e+02 Score=36.15 Aligned_cols=73 Identities=16% Similarity=0.190 Sum_probs=47.9
Q ss_pred eecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC----Ce----eeeeccccCCCCCeeccEEEEEc--cCC-CC
Q 003882 46 TYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLG----NY----KGKTRHFEKKSNPEWKQVFAFSK--EKI-QS 114 (789)
Q Consensus 46 ~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~----~~----~~~T~~~~~t~nP~wne~f~f~~--~~~-~~ 114 (789)
-++.. ..++|+++.+.++.. ...-|-+|.|..+ .+ ...|.-+..+.+|.||+...|++ .++ ..
T Consensus 338 LWd~~---~~frI~l~~is~~n~---~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ 411 (1076)
T KOG0904|consen 338 LWDLD---RPFRIKLVGISKVNL---PETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRM 411 (1076)
T ss_pred HHcCC---CceEEEEeeccccCC---CcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChh
Confidence 35554 357888888776643 2345677777654 32 24566666688999999999986 333 45
Q ss_pred ceEEEEEEeC
Q 003882 115 SVLEVFVRDR 124 (789)
Q Consensus 115 ~~l~v~V~d~ 124 (789)
..|-+.||..
T Consensus 412 ArLc~~i~~v 421 (1076)
T KOG0904|consen 412 ARLCLAIYAV 421 (1076)
T ss_pred hhheeeeeEe
Confidence 6777777753
No 335
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=24.04 E-value=4.7e+02 Score=24.10 Aligned_cols=84 Identities=17% Similarity=0.211 Sum_probs=57.1
Q ss_pred EEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEe-----CC--------CceEEEE
Q 003882 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVY-----DP--------CTVITLG 449 (789)
Q Consensus 383 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~-----~~--------~~~l~v~ 449 (789)
|+|+-+.|=|.--. .+-|-|..|++=|+..||+...-..-=.++|.|.|+=. ++ ...+.|+
T Consensus 4 L~i~aVTCPGv~L~------~~~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iE 77 (140)
T PF14909_consen 4 LEIHAVTCPGVWLC------DKGDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIE 77 (140)
T ss_pred EEEEEEecCCeEeC------CCCCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEE
Confidence 44555555554322 35589999999999999988754443455899988432 22 4578899
Q ss_pred EEeCCCCCCCCCCCCCccEEEEEECcccc
Q 003882 450 VFDNCHLGGSGTKPDSRIGKVRIRLSTLE 478 (789)
Q Consensus 450 v~d~~~~~~~~~~~d~~lG~~~i~l~~l~ 478 (789)
++..... ....|+...=++.++.
T Consensus 78 LiQl~~~------~g~iLA~ye~n~rDfL 100 (140)
T PF14909_consen 78 LIQLVPP------AGEILAYYEENTRDFL 100 (140)
T ss_pred EEEEeCC------CCcEEEEEeccccceE
Confidence 9887664 3568888877777754
No 336
>PF15202 Adipogenin: Adipogenin
Probab=22.31 E-value=1.3e+02 Score=23.40 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHhhcccc
Q 003882 634 LPTIFLYMFLIGIWNYRF 651 (789)
Q Consensus 634 ~p~~~l~l~~~~~~~~~~ 651 (789)
+|+.+++.+++...++..
T Consensus 23 lpv~lllfl~ivwlrfll 40 (81)
T PF15202_consen 23 LPVGLLLFLLIVWLRFLL 40 (81)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566555444444444443
No 337
>PF08060 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 This is the central domain in Nop56/SIK1-like proteins [].; PDB: 3PLA_K 3ICX_B 3ID6_A 3ID5_E 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E ....
Probab=21.78 E-value=1.6e+02 Score=21.99 Aligned_cols=32 Identities=19% Similarity=0.329 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhhHHHHHhccccCCchhhHHH
Q 003882 702 GRIQTVVGDMATQGERFQALLSWRDPRATSLF 733 (789)
Q Consensus 702 ~~vq~~l~~~a~~~e~~~~l~~w~~p~~t~~~ 733 (789)
..+..+=.+++.+.++++...+|+.|.+..++
T Consensus 7 ~l~~~id~ei~~~~~~lre~Y~~~FPEL~~lv 38 (53)
T PF08060_consen 7 ELLDDIDKEINLLHMRLREWYSWHFPELESLV 38 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSTTHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccchhHHHHc
Confidence 33555667899999999999999999988753
No 338
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=21.26 E-value=2.3e+02 Score=29.38 Aligned_cols=71 Identities=20% Similarity=0.288 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccccCCchhhHHHHHHHHHHHHHHhhhhhHHHHhhhhhhhccCCccc
Q 003882 691 RMRYDRLRSVAGRIQTVVGDMATQGERFQALLSWRDPRATSLFVIFCLIAAVVLYVTPFKIITLVAGLFWLRHPRFR 767 (789)
Q Consensus 691 ~~~~~~l~~~~~~vq~~l~~~a~~~e~~~~l~~w~~p~~t~~~~~~l~~~~~~~~~iP~r~i~l~~g~~~~~~P~~r 767 (789)
.+.++.+..+..+++.+.+.+....+-..+..+-+ ....+-.+.++++ .|+|+-+|.-++|-++..-|-..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~n~~m~~LT~~t~--iflPlt~i~g~fGMN~~~~p~~~ 265 (292)
T PF01544_consen 195 RDLLDRIERLLERAESLRERLESLQDLYQSKLSNR----QNRVMKVLTIVTA--IFLPLTFITGIFGMNFKGMPELD 265 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH----HHHHHHHHHHHHH--HHHHHHHHTTSTTS-SS---SSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH--HHHHHHHHHHHhhCCccCCCccC
Confidence 33334444444444444444444444444444444 3333334444433 34899888888888766545333
No 339
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=21.16 E-value=1.2e+02 Score=35.34 Aligned_cols=71 Identities=10% Similarity=-0.045 Sum_probs=54.2
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCC
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREI 126 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~ 126 (789)
.......+.++.....++.++||..+...++.....+...+.+|.|++.+.|.-....-....+.+++...
T Consensus 99 ~~~~~~~~~~~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf~eI~ 169 (590)
T KOG1032|consen 99 GSSALLAGVNLASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPFDEIT 169 (590)
T ss_pred chhhhhcchhhhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEeeeeee
Confidence 44444555666665666788999999999988888899999999999999999766654566666666544
No 340
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=20.34 E-value=3.2e+02 Score=23.99 Aligned_cols=67 Identities=21% Similarity=0.217 Sum_probs=44.4
Q ss_pred CCceEEEEEEeCCC---CCCCceeEEEEEEccccCCC----C-----CCCCCCCCeeEEcccCCCCCccceEEEEEEEEe
Q 003882 113 QSSVLEVFVRDREI---VGRDDYIGKVVFDMNEVPTR----V-----PPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIG 180 (789)
Q Consensus 113 ~~~~l~v~V~d~~~---~~~d~~lG~~~i~l~~l~~~----~-----~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 180 (789)
....|.+.+++... .....+||.+.+++.+.... . .+.+.....-|+|.+..+. ..|+|.+.+++.
T Consensus 27 ~~~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~~--~~G~I~l~iRLs 104 (112)
T PF14924_consen 27 SSFPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENGN--PVGEISLYIRLS 104 (112)
T ss_pred hCCceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCCc--eeeeEEEEEEEe
Confidence 35677777766533 34567999999999876521 0 1112233467999987664 679999988775
Q ss_pred e
Q 003882 181 T 181 (789)
Q Consensus 181 ~ 181 (789)
.
T Consensus 105 c 105 (112)
T PF14924_consen 105 C 105 (112)
T ss_pred c
Confidence 4
No 341
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=20.20 E-value=40 Score=39.92 Aligned_cols=67 Identities=18% Similarity=0.219 Sum_probs=50.7
Q ss_pred eeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCC
Q 003882 53 MFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREI 126 (789)
Q Consensus 53 ~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~ 126 (789)
+|.+.+.+.+|..|.. ..+-||...+.. -+.+|+++.+|..|.||++|+..+..- +.+++..++++.
T Consensus 758 ygflh~~vhsat~lkq-----s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~s--qS~r~~~~ek~~ 829 (1112)
T KOG4269|consen 758 YGFLHVIVHSATGLKQ-----SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIES--QSSRLEKTEKST 829 (1112)
T ss_pred ccceeeeecccccccc-----ccceeeehhhhhhccccccccceeeecccCCCCChhcccchhhc--cccchhhhcccc
Confidence 4678889999988864 346788877654 367999999999999999999988664 455566665543
No 342
>PHA02844 putative transmembrane protein; Provisional
Probab=20.15 E-value=2.2e+02 Score=22.81 Aligned_cols=17 Identities=18% Similarity=0.091 Sum_probs=11.1
Q ss_pred HHHhhhHHHHHhccccC
Q 003882 709 GDMATQGERFQALLSWR 725 (789)
Q Consensus 709 ~~~a~~~e~~~~l~~w~ 725 (789)
+|+++++|-++.+++=.
T Consensus 18 dDFnnFI~vVksVLtd~ 34 (75)
T PHA02844 18 EDFNNFIDVVKSVLSDD 34 (75)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 46666777777777543
Done!