Query 003883
Match_columns 789
No_of_seqs 251 out of 762
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 07:09:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003883.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003883hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 95.9 0.071 2.4E-06 58.7 13.7 102 217-323 130-239 (511)
2 3gia_A Uncharacterized protein 95.9 0.031 1.1E-06 60.4 10.5 80 217-307 125-208 (444)
3 3l1l_A Arginine/agmatine antip 94.3 0.19 6.7E-06 54.0 11.0 80 218-306 126-210 (445)
4 2bm3_A Type 2 cohesin, scaffol 20.1 27 0.00094 34.1 0.7 11 265-275 45-55 (166)
5 2l6p_A PHAC1, PHAC2 and PHAD g 19.8 41 0.0014 31.2 1.8 22 759-782 30-51 (124)
6 3luu_A Uncharacterized protein 15.5 51 0.0017 29.1 1.3 16 759-774 35-50 (101)
7 1nrp_R Receptor based peptide 15.2 50 0.0017 22.5 0.8 16 339-354 5-20 (26)
8 2l6n_A Uncharacterized protein 15.2 61 0.0021 30.4 1.8 14 759-772 37-50 (132)
9 2rdd_B UPF0092 membrane protei 13.0 2.7E+02 0.0092 20.4 4.4 33 497-529 1-33 (37)
10 3ghp_A Cellulosomal scaffoldin 12.4 56 0.0019 33.3 0.7 13 263-275 46-58 (227)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=95.87 E-value=0.071 Score=58.66 Aligned_cols=102 Identities=16% Similarity=0.154 Sum_probs=54.3
Q ss_pred EehhHHHHHHHHHhhhcccccccccchhhH----HHHHHHHHHHhhhhhccccCcceeeecChHHHHHHHHhc--Cccee
Q 003883 217 VVLVAVVILVGLFSLQHYGTDRVGWLFAPI----VLLWFLLIGGIGMLNIWKYDSSVLKAFSPVYIYRYFRRG--GRDGW 290 (789)
Q Consensus 217 Vv~is~~ILv~LF~iQ~~GT~kvg~~F~PI----m~~Wf~~i~~iGiynI~~~~P~Vl~AlnP~ya~~f~~~~--g~~g~ 290 (789)
...+++++++++..+--+|....+++..-. +++-++.+.++|++.+...+|.-++ .|+ +.+..+ +..+|
T Consensus 130 ~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~ 204 (511)
T 4djk_A 130 KTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIE-MDS----KTFFPDFSKVGTL 204 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC-----------------CCCCCTTSTTTT
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc-Ccc----cccCCCcccchHH
Confidence 456788888888899999988777654322 2223445556677665543332211 111 111111 23456
Q ss_pred eeecceeeeeccccccccCCCCCC--Ccceehhhh
Q 003883 291 TSLGGIMLSITGTEALFADLAHFP--VSAIQIAFT 323 (789)
Q Consensus 291 ~~LG~v~L~iTGaEAlyADlGHFg--~~~Ir~aw~ 323 (789)
..+..++.+.+|-|+.-.=-+-.- +|.+..|-.
T Consensus 205 ~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~ 239 (511)
T 4djk_A 205 VVFVAFILSYMGVEASATHVNEMSNPGRDYPLAML 239 (511)
T ss_dssp TTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHhccCcccchhHHHH
Confidence 667778899999998644333332 344544433
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=95.86 E-value=0.031 Score=60.40 Aligned_cols=80 Identities=19% Similarity=0.264 Sum_probs=45.0
Q ss_pred EehhHHHHHHHHHhhhccccccccc---chhhHHHHHHHHHHHhhhhhccccCcceeee-cChHHHHHHHHhcCcceeee
Q 003883 217 VVLVAVVILVGLFSLQHYGTDRVGW---LFAPIVLLWFLLIGGIGMLNIWKYDSSVLKA-FSPVYIYRYFRRGGRDGWTS 292 (789)
Q Consensus 217 Vv~is~~ILv~LF~iQ~~GT~kvg~---~F~PIm~~Wf~~i~~iGiynI~~~~P~Vl~A-lnP~ya~~f~~~~g~~g~~~ 292 (789)
...+++++++++..+.-+|....++ .+..+.++=++.+.+.|+... +|+-+.. ++|.-...+ +..
T Consensus 125 ~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~---~~~~~~~~~~~~g~~~~--------~~~ 193 (444)
T 3gia_A 125 IAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI---HPSYVIPDLAPSAVSGM--------IFA 193 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CGGGTSCCCSHHHHHHH--------HHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---ChhhcCCCCCCcchHHH--------HHH
Confidence 3456788888888899999876665 445554544455555565543 3443222 233211111 123
Q ss_pred ecceeeeeccccccc
Q 003883 293 LGGIMLSITGTEALF 307 (789)
Q Consensus 293 LG~v~L~iTGaEAly 307 (789)
+...+.+.+|-|+.-
T Consensus 194 ~~~~~~a~~G~e~~~ 208 (444)
T 3gia_A 194 SAIFFLSYMGFGVIT 208 (444)
T ss_dssp HHHGGGGGTHHHHHH
T ss_pred HHHHHHHHHhHHHHH
Confidence 344567888998763
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=94.28 E-value=0.19 Score=54.02 Aligned_cols=80 Identities=16% Similarity=0.172 Sum_probs=39.4
Q ss_pred ehhHHHHHHHHHhhhcccccccccc---hhhHHHHHHHHHHHhhhhhccccCccee-eecChHHHHHHHHhcCcce-eee
Q 003883 218 VLVAVVILVGLFSLQHYGTDRVGWL---FAPIVLLWFLLIGGIGMLNIWKYDSSVL-KAFSPVYIYRYFRRGGRDG-WTS 292 (789)
Q Consensus 218 v~is~~ILv~LF~iQ~~GT~kvg~~---F~PIm~~Wf~~i~~iGiynI~~~~P~Vl-~AlnP~ya~~f~~~~g~~g-~~~ 292 (789)
..+++++++++..+--+|....+++ +.++.++=++.+.+.|+. ..+|+.+ ..++|.-.- +..+ +..
T Consensus 126 ~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~------~~~~~~~~ 196 (445)
T 3l1l_A 126 TITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWF---WFRGETYMAAWNVSGLG------TFGAIQST 196 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTST---TCCCCCCCCC-----------------HHHH
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhChhhcccccCccCCc------cHHHHHHH
Confidence 3467777777788888888777764 444444333334444443 3345443 334442100 0111 122
Q ss_pred ecceeeeecccccc
Q 003883 293 LGGIMLSITGTEAL 306 (789)
Q Consensus 293 LG~v~L~iTGaEAl 306 (789)
+..++.+.+|-|+.
T Consensus 197 ~~~~~~af~G~e~~ 210 (445)
T 3l1l_A 197 LNVTLWSFIGVESA 210 (445)
T ss_dssp HHHHHHTTTTTTHH
T ss_pred HHHHHHHHHhHHHH
Confidence 33456677888865
No 4
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=20.10 E-value=27 Score=34.14 Aligned_cols=11 Identities=55% Similarity=0.896 Sum_probs=4.7
Q ss_pred cCcceeeecCh
Q 003883 265 YDSSVLKAFSP 275 (789)
Q Consensus 265 ~~P~Vl~AlnP 275 (789)
|||+||+|.||
T Consensus 45 YDP~VLqaVn~ 55 (166)
T 2bm3_A 45 YDPKVLMAVDP 55 (166)
T ss_dssp CCTTTEEEECT
T ss_pred ECccceEeecC
Confidence 34444444444
No 5
>2l6p_A PHAC1, PHAC2 and PHAD genes; DUF971, structural genomics, PSI-biology, protein structure initiative, joint center for structural genomics; NMR {Pseudomonas aeruginosa}
Probab=19.82 E-value=41 Score=31.16 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=15.2
Q ss_pred HHHHHhhccCCCcccccCCCCeEe
Q 003883 759 YAFLRKICRENSVIFNVPHESLLN 782 (789)
Q Consensus 759 Y~FLRkNcR~~~~~L~IPh~~LlE 782 (789)
|.|||.||+++...-. .++++.
T Consensus 30 ~~wLRd~Cpcaec~~~--~qr~l~ 51 (124)
T 2l6p_A 30 AEFLRVHSPSAEVQGH--GNPVLQ 51 (124)
T ss_dssp HHHHHHTCCCSSCCSC--CCCCCC
T ss_pred HHHHHhcCCCcccCCC--Cccccc
Confidence 5799999999865543 455443
No 6
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=15.49 E-value=51 Score=29.12 Aligned_cols=16 Identities=19% Similarity=0.225 Sum_probs=9.8
Q ss_pred HHHHHhhccCCCcccc
Q 003883 759 YAFLRKICRENSVIFN 774 (789)
Q Consensus 759 Y~FLRkNcR~~~~~L~ 774 (789)
|.|||.||+.+...-.
T Consensus 35 ~~wLRd~c~ca~c~~~ 50 (101)
T 3luu_A 35 FEHLRVECPCAECKGH 50 (101)
T ss_dssp HHHHHHTCCCC-----
T ss_pred HHHHHhhCCChhhcCc
Confidence 6799999997765443
No 7
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=15.19 E-value=50 Score=22.52 Aligned_cols=16 Identities=13% Similarity=0.596 Sum_probs=14.1
Q ss_pred hhhcccCccccccccc
Q 003883 339 AYLMNHQDHVVDAFYR 354 (789)
Q Consensus 339 A~ll~~p~~~~npFy~ 354 (789)
.||++||++.-.||+.
T Consensus 5 sfllrnpndkyepfwe 20 (26)
T 1nrp_R 5 SFLLRNPNDKYEPFWE 20 (26)
T ss_pred hhhhcCCCcccCcccc
Confidence 5899999999999985
No 8
>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}
Probab=15.17 E-value=61 Score=30.41 Aligned_cols=14 Identities=21% Similarity=0.199 Sum_probs=11.6
Q ss_pred HHHHHhhccCCCcc
Q 003883 759 YAFLRKICRENSVI 772 (789)
Q Consensus 759 Y~FLRkNcR~~~~~ 772 (789)
|.|||.||+++...
T Consensus 37 ~~wLRd~Cpcaec~ 50 (132)
T 2l6n_A 37 CELLRVYSPSAEVH 50 (132)
T ss_dssp HHHHHHSCSCSSSS
T ss_pred HHHHHhcCCCcccC
Confidence 57999999997654
No 9
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=12.95 E-value=2.7e+02 Score=20.45 Aligned_cols=33 Identities=12% Similarity=0.152 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHHHHhhhhhhHhHHHHHHHHHhc
Q 003883 497 GGWVPLVIAAAFLVIMYVWHYGTVKRYEFEMHS 529 (789)
Q Consensus 497 GGW~pl~la~v~~~iM~~W~~G~~~~~~~~~~~ 529 (789)
|||..++.-++++.+||..-.-..+|.+.+.++
T Consensus 1 ~~~~~~l~~v~~~~ifYFl~iRPQ~Kr~K~~~~ 33 (37)
T 2rdd_B 1 SPMSLILMLVVFGLIFYFMILRPQQKRTKEHKK 33 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
No 10
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta barrel, alpha helix, beta flaps, structural protein; 2.49A {Acetivibrio cellulolyticus}
Probab=12.38 E-value=56 Score=33.29 Aligned_cols=13 Identities=54% Similarity=0.915 Sum_probs=0.0
Q ss_pred cccCcceeeecCh
Q 003883 263 WKYDSSVLKAFSP 275 (789)
Q Consensus 263 ~~~~P~Vl~AlnP 275 (789)
++|||.||+|+||
T Consensus 46 IKYDP~vLQaVnp 58 (227)
T 3ghp_A 46 IKYDPTVLQAVNP 58 (227)
T ss_dssp EECCTTTEEEECT
T ss_pred eeeChhheecccC
Done!