Query 003883
Match_columns 789
No_of_seqs 251 out of 762
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 07:09:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003883.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/003883hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvxa3 f.57.1.1 (A:276-448) M 17.9 31 0.0023 31.6 2.9 122 328-462 12-135 (173)
2 d2e74h1 f.23.27.1 (H:3-29) Pet 14.7 42 0.003 21.6 1.9 20 498-517 5-24 (27)
3 d1or7a2 a.177.1.1 (A:-1-111) S 12.8 52 0.0038 26.7 2.7 24 747-770 73-96 (113)
4 d2h8pc1 f.14.1.1 (C:22-78) Pot 8.7 53 0.0038 24.9 1.1 41 327-369 14-54 (57)
5 d1f2qa2 b.1.1.4 (A:86-174) IgE 7.2 1E+02 0.0073 23.8 2.3 30 594-623 46-75 (89)
6 d1iray2 b.1.1.4 (Y:102-204) Ty 6.5 1.1E+02 0.008 24.6 2.2 26 596-621 57-82 (103)
7 d1f97a1 b.1.1.1 (A:27-128) Jun 6.5 1E+02 0.0073 23.8 1.9 25 599-623 67-91 (102)
8 d1pw4a_ f.38.1.1 (A:) Glycerol 5.9 7.3E+02 0.053 22.4 8.5 75 434-532 373-447 (447)
9 d1krha2 c.25.1.2 (A:206-338) B 5.5 2E+02 0.015 23.4 3.4 41 380-420 17-57 (133)
10 d1jl0a_ d.156.1.1 (A:) S-adeno 5.3 1.3E+02 0.0093 30.0 2.2 39 698-738 109-147 (325)
No 1
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=17.86 E-value=31 Score=31.56 Aligned_cols=122 Identities=13% Similarity=0.184 Sum_probs=70.4
Q ss_pred HHHHhhhccc--hhhhcccCccccccccccccCcchHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcCCCCceeEEecC
Q 003883 328 PCLLLAYSGQ--AAYLMNHQDHVVDAFYRSIPDSIYWPVFIVATAAAIVASQATISATFSIIKQALALGCFPRVKVVHTS 405 (789)
Q Consensus 328 P~L~L~Y~GQ--~A~ll~~p~~~~npFy~~~P~~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qai~Lg~fPr~kIvhTS 405 (789)
|-|++|.+|+ +|+++.+-|+.-+-+-. =..|.|+ ++-.+.-++||+.. ++-+++++|-.-+-. .-
T Consensus 12 pWL~i~l~~~~~~a~ii~~Fe~~l~~~~~---La~fiPl--i~~~gGN~G~Qs~t-----i~iR~La~g~i~~~~---~~ 78 (173)
T d2yvxa3 12 RWLVILILTGMVTSSILQGFESVLEAVTA---LAFYVPV--LLGTGGNTGNQSAT-----LIIRALATRDLDLRD---WR 78 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTTTTTTS---CCCCSHH--HHHHHHHHHHHHHH-----HHHHHHHTTCSCSSS---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--HhcCCchHHHHHHH-----HHHHHHhcccccchh---HH
Confidence 4455555555 45777665554332211 1256676 56678889999874 888999999643211 11
Q ss_pred CcccCceeehhhHHHHHHHhhheEEeecCchhhhhhhhchhhHHHHHHHHHHHHHHH
Q 003883 406 KKFLGQIYIPDINWILMILCIAVTAGFKNQSQIGNAYGTAVVIVMLATTLLMTLIMI 462 (789)
Q Consensus 406 ~~~~GQIYIP~vNw~Lmi~~l~vv~~F~~s~~l~~AYGiAV~~~M~iTT~L~~lv~~ 462 (789)
+....++.+-.+|=+.+-..+.....+++...++-+=|++...+|.+.+++=+++=.
T Consensus 79 ~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~~~~~ia~~~G~~lPl 135 (173)
T d2yvxa3 79 RVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLVGAMLPF 135 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123345666667766555554444445565566666666666666666655544433
No 2
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=14.73 E-value=42 Score=21.58 Aligned_cols=20 Identities=35% Similarity=0.886 Sum_probs=15.7
Q ss_pred CcHHHHHHHHHHHhhhhhhH
Q 003883 498 GWVPLVIAAAFLVIMYVWHY 517 (789)
Q Consensus 498 GW~pl~la~v~~~iM~~W~~ 517 (789)
||+.|+.-..-.+-|.+|-+
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 78888887777788888854
No 3
>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=12.77 E-value=52 Score=26.68 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=21.2
Q ss_pred CchhHHHHHHHHHHHHHhhccCCC
Q 003883 747 SKFYKKIAIDYIYAFLRKICRENS 770 (789)
Q Consensus 747 Ss~lKK~vIn~~Y~FLRkNcR~~~ 770 (789)
.+|+.+++-|.+++++|++.|.+.
T Consensus 73 ~~wl~~I~~n~~~d~~R~~~r~~~ 96 (113)
T d1or7a2 73 YTWLYRIAVNTAKNYLVAQGRRPP 96 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Confidence 468999999999999999998764
No 4
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=8.69 E-value=53 Score=24.88 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=26.7
Q ss_pred HHHHHhhhccchhhhcccCccccccccccccCcchHHHHHHHH
Q 003883 327 FPCLLLAYSGQAAYLMNHQDHVVDAFYRSIPDSIYWPVFIVAT 369 (789)
Q Consensus 327 ~P~L~L~Y~GQ~A~ll~~p~~~~npFy~~~P~~~~~P~~vlAt 369 (789)
+-++++--++=+.|+..+... +.-|.++|+.+.|-++-+.|
T Consensus 14 ~~~i~i~~~s~~~y~~E~~~~--~~~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 14 LLVIVLLAGSYLAVLAERGAP--GAQLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHTTST--TCCCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCCC--Cccccccchhhhhheeeeec
Confidence 344444445566677776543 33489999999998775543
No 5
>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.19 E-value=1e+02 Score=23.77 Aligned_cols=30 Identities=10% Similarity=0.149 Sum_probs=23.6
Q ss_pred CCCceEEEEEecCCCCCEEEEEEEeecccC
Q 003883 594 PEEERFLVKRIGPKNFHMFRCVARYGYKDL 623 (789)
Q Consensus 594 ~~~eR~~v~~~~~~~~~~yr~~~ryGy~d~ 623 (789)
.....+.+..+...+.|.|+|.++.++.+.
T Consensus 46 ~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~ 75 (89)
T d1f2qa2 46 YENHNISITNATVEDSGTYYCTGKVWQLDY 75 (89)
T ss_dssp CCSSEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred cccceEEEeeeeeecCcEEEEEEEeCCCCe
Confidence 345678888888778899999999887543
No 6
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.46 E-value=1.1e+02 Score=24.58 Aligned_cols=26 Identities=27% Similarity=0.582 Sum_probs=21.3
Q ss_pred CceEEEEEecCCCCCEEEEEEEeecc
Q 003883 596 EERFLVKRIGPKNFHMFRCVARYGYK 621 (789)
Q Consensus 596 ~eR~~v~~~~~~~~~~yr~~~ryGy~ 621 (789)
+..+.|..+...+.|.|+|.+++.|.
T Consensus 57 ~~~L~I~~v~~~D~G~Y~C~a~n~~~ 82 (103)
T d1iray2 57 KDRLIVMNVAEKHRGNYTCHASYTYL 82 (103)
T ss_dssp TTEEEESSCCGGGCEEEEEEEEEEET
T ss_pred CCEEEEcccccccCcEEEEEEEECcC
Confidence 45678888888888999999987664
No 7
>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.45 E-value=1e+02 Score=23.81 Aligned_cols=25 Identities=8% Similarity=0.094 Sum_probs=19.4
Q ss_pred EEEEEecCCCCCEEEEEEEeecccC
Q 003883 599 FLVKRIGPKNFHMFRCVARYGYKDL 623 (789)
Q Consensus 599 ~~v~~~~~~~~~~yr~~~ryGy~d~ 623 (789)
+.+.++...+.|.|+|.++..+.+.
T Consensus 67 L~I~~v~~~D~G~Y~C~a~n~~g~~ 91 (102)
T d1f97a1 67 ITFSSVTRKDNGEYTCMVSEEGGQN 91 (102)
T ss_dssp EEESCCCGGGCEEEEEEEEETTSSS
T ss_pred EEEeECCccCCEEEEEEEEECCCCE
Confidence 4577777778899999998766543
No 8
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=5.85 E-value=7.3e+02 Score=22.43 Aligned_cols=75 Identities=15% Similarity=0.040 Sum_probs=0.0
Q ss_pred CchhhhhhhhchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCcHHHHHHHHHHHhhh
Q 003883 434 NQSQIGNAYGTAVVIVMLATTLLMTLIMILVWRCHWILVLIFTALSLVVECTYFSAVLFKVDQGGWVPLVIAAAFLVIMY 513 (789)
Q Consensus 434 ~s~~l~~AYGiAV~~~M~iTT~L~~lv~~~vw~~~~~~~~~~~~~F~~ie~~f~sa~l~K~~~GGW~pl~la~v~~~iM~ 513 (789)
..+..+.+.|+.-+...+..+++..++.-.+....-+.... |+-...+++...+++
T Consensus 373 p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~------------------------~~~~~~~~~~~~~~~ 428 (447)
T d1pw4a_ 373 PKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGF------------------------MVMIGGSILAVILLI 428 (447)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHH------------------------HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH------------------------HHHHHHHHHHHHHHH
Q ss_pred hhhHhHHHHHHHHHhcCCC
Q 003883 514 VWHYGTVKRYEFEMHSKVS 532 (789)
Q Consensus 514 ~W~~G~~~~~~~~~~~~~~ 532 (789)
.....++++.+...++..|
T Consensus 429 ~~~~~~~~r~~~~~~e~~P 447 (447)
T d1pw4a_ 429 VVMIGEKRRHEQLLQELVP 447 (447)
T ss_dssp HHHHHHHHHHHGGGGGSCC
T ss_pred HHHHhccccHHHHHHhCCC
No 9
>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}
Probab=5.49 E-value=2e+02 Score=23.38 Aligned_cols=41 Identities=12% Similarity=0.154 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHcCCCCceeEEecCCcccCceeehhhHHH
Q 003883 380 ISATFSIIKQALALGCFPRVKVVHTSKKFLGQIYIPDINWI 420 (789)
Q Consensus 380 ISg~FSii~Qai~Lg~fPr~kIvhTS~~~~GQIYIP~vNw~ 420 (789)
||-..|+++++.+.+.-+++.++|..+....-+|-.++..+
T Consensus 17 ItP~~s~l~~~~~~~~~~~i~l~~~~r~~~d~~~~~el~~l 57 (133)
T d1krha2 17 IAPFLSMLQVLEQKGSEHPVRLVFGVTQDCDLVALEQLDAL 57 (133)
T ss_dssp HHHHHHHHHHHHHHCCSSCEEEEEEESSGGGCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCceEEEEeecchhHHHHHHHHHHH
No 10
>d1jl0a_ d.156.1.1 (A:) S-adenosylmethionine decarboxylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.29 E-value=1.3e+02 Score=29.99 Aligned_cols=39 Identities=21% Similarity=0.214 Sum_probs=0.0
Q ss_pred CCccccccccCcccCCCcchHHHHHHHHHhHhcCcEEEeee
Q 003883 698 SPLHVNSTVMSSSQMSSHTETDELEFLNSCRDAGVVHILGN 738 (789)
Q Consensus 698 ~~vrf~~~~~~~~~~~~~~v~eEl~~L~~A~eaGVvYIlG~ 738 (789)
+|..|..+.....+ ..+-++|.+.|++....|..|++|+
T Consensus 109 sRknf~fP~~Q~~p--H~sf~~Ev~~L~~~f~~G~aY~~G~ 147 (325)
T d1jl0a_ 109 SRKNFMKPSHQGYP--HRNFQEEIEFLNAIFPNGAGYCMGR 147 (325)
T ss_dssp EEECCSSGGGCCTT--CSSHHHHHHHHHTTCSSEEEEEESC
T ss_pred ecccCcCcccCCcc--cCCHHHHHHHHHHhCCCCceEEecC
Done!