Query 003885
Match_columns 789
No_of_seqs 453 out of 2608
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 13:45:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003885.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003885hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0474 Cl- channel CLC-7 and 100.0 3E-174 7E-179 1407.6 45.0 729 41-788 24-758 (762)
2 KOG0475 Cl- channel CLC-3 and 100.0 1.3E-87 2.9E-92 733.9 32.9 586 107-775 57-693 (696)
3 KOG0476 Cl- channel CLC-2 and 100.0 8.7E-85 1.9E-89 719.7 28.7 651 87-777 78-858 (931)
4 cd03685 ClC_6_like ClC-6-like 100.0 5.8E-80 1.3E-84 700.0 46.5 460 73-599 1-463 (466)
5 PRK01862 putative voltage-gate 100.0 1.2E-75 2.6E-80 685.4 55.5 542 106-778 26-572 (574)
6 cd03684 ClC_3_like ClC-3-like 100.0 7.3E-70 1.6E-74 614.6 41.2 423 112-595 1-445 (445)
7 cd03683 ClC_1_like ClC-1-like 100.0 1.6E-67 3.5E-72 593.0 39.9 411 105-597 2-426 (426)
8 cd01036 ClC_euk Chloride chann 100.0 3.6E-67 7.7E-72 588.9 36.9 403 112-584 1-416 (416)
9 cd01031 EriC ClC chloride chan 100.0 3.3E-59 7.2E-64 524.0 41.9 398 111-588 1-402 (402)
10 PRK01610 putative voltage-gate 100.0 8.7E-59 1.9E-63 520.0 43.0 408 103-590 3-417 (418)
11 PRK05277 chloride channel prot 100.0 3.1E-58 6.8E-63 521.0 46.3 410 106-590 2-417 (438)
12 cd01034 EriC_like ClC chloride 100.0 2.9E-56 6.3E-61 497.7 39.6 385 116-584 1-390 (390)
13 cd01033 ClC_like Putative ClC 100.0 6.8E-56 1.5E-60 493.4 39.5 385 112-579 1-387 (388)
14 PF00654 Voltage_CLC: Voltage 100.0 9E-57 1.9E-61 496.1 31.8 346 160-577 2-355 (355)
15 COG0038 EriC Chloride channel 100.0 1.8E-54 3.9E-59 487.6 44.4 410 104-596 22-437 (443)
16 cd00400 Voltage_gated_ClC CLC 100.0 3.3E-52 7.2E-57 465.3 39.2 380 112-572 1-383 (383)
17 cd03682 ClC_sycA_like ClC sycA 100.0 5.3E-49 1.1E-53 437.3 40.5 375 108-584 2-378 (378)
18 PRK03655 putative ion channel 100.0 1.8E-46 4E-51 418.3 40.1 383 102-575 10-397 (414)
19 cd01034 EriC_like ClC chloride 99.7 1.4E-15 3E-20 170.5 20.4 183 103-314 200-382 (390)
20 cd01033 ClC_like Putative ClC 99.7 1.3E-15 2.9E-20 170.2 16.5 183 104-315 204-386 (388)
21 PRK05277 chloride channel prot 99.6 1.3E-14 2.7E-19 165.2 16.6 187 104-313 216-402 (438)
22 COG3448 CBS-domain-containing 99.6 2.4E-14 5.2E-19 145.9 15.0 134 603-780 242-375 (382)
23 COG2524 Predicted transcriptio 99.6 1.1E-14 2.4E-19 146.1 10.5 122 603-776 169-290 (294)
24 cd00400 Voltage_gated_ClC CLC 99.5 8.4E-14 1.8E-18 156.0 16.1 166 102-291 203-368 (383)
25 PRK10892 D-arabinose 5-phospha 99.5 4.7E-14 1E-18 154.7 13.8 147 579-775 169-323 (326)
26 PRK11543 gutQ D-arabinose 5-ph 99.5 4.4E-14 9.6E-19 154.6 13.3 147 579-775 164-318 (321)
27 PRK01862 putative voltage-gate 99.5 2.3E-13 4.9E-18 160.3 16.8 182 104-314 238-421 (574)
28 PRK01610 putative voltage-gate 99.5 4.5E-13 9.7E-18 151.0 17.8 183 103-314 219-403 (418)
29 cd04641 CBS_pair_28 The CBS do 99.4 1.8E-12 3.9E-17 120.2 12.9 119 614-774 1-119 (120)
30 cd03682 ClC_sycA_like ClC sycA 99.4 4.5E-12 9.8E-17 141.5 18.5 153 104-290 199-353 (378)
31 COG4109 Predicted transcriptio 99.4 4.1E-13 8.9E-18 140.1 8.1 147 561-776 157-305 (432)
32 cd01031 EriC ClC chloride chan 99.4 4.4E-12 9.6E-17 142.9 15.8 185 103-313 205-389 (402)
33 COG3620 Predicted transcriptio 99.4 1.6E-12 3.6E-17 121.5 9.4 121 604-776 63-183 (187)
34 cd04619 CBS_pair_6 The CBS dom 99.4 5.9E-12 1.3E-16 115.7 12.7 111 616-774 3-113 (114)
35 PRK07807 inosine 5-monophospha 99.3 3E-12 6.5E-17 145.6 11.3 122 601-777 84-205 (479)
36 cd04603 CBS_pair_KefB_assoc Th 99.3 8.4E-12 1.8E-16 114.2 12.1 109 615-774 2-110 (111)
37 cd04618 CBS_pair_5 The CBS dom 99.3 7.8E-12 1.7E-16 112.2 11.6 95 615-774 2-97 (98)
38 cd04600 CBS_pair_HPP_assoc Thi 99.3 9.4E-12 2E-16 115.6 12.2 123 613-774 1-123 (124)
39 TIGR03520 GldE gliding motilit 99.3 6.8E-12 1.5E-16 141.1 12.9 127 603-782 188-316 (408)
40 cd04617 CBS_pair_4 The CBS dom 99.3 1.9E-11 4.1E-16 113.0 13.1 114 615-774 2-117 (118)
41 cd04593 CBS_pair_EriC_assoc_ba 99.3 1.8E-11 3.9E-16 112.3 12.3 111 615-774 2-114 (115)
42 PRK15094 magnesium/cobalt effl 99.3 1.2E-11 2.7E-16 132.8 12.1 130 603-783 64-195 (292)
43 cd04596 CBS_pair_DRTGG_assoc T 99.3 1.5E-11 3.3E-16 111.6 10.4 105 615-774 3-107 (108)
44 cd04605 CBS_pair_MET2_assoc Th 99.3 3E-11 6.4E-16 109.8 12.3 108 614-774 2-109 (110)
45 cd04608 CBS_pair_PALP_assoc Th 99.3 1.3E-11 2.8E-16 115.6 9.6 113 614-775 2-123 (124)
46 cd04639 CBS_pair_26 The CBS do 99.3 3E-11 6.5E-16 109.9 11.6 109 615-774 2-110 (111)
47 cd04586 CBS_pair_BON_assoc Thi 99.3 1.7E-11 3.7E-16 116.2 10.0 134 613-774 1-134 (135)
48 cd04803 CBS_pair_15 The CBS do 99.3 3.6E-11 7.9E-16 111.3 11.7 120 615-774 2-121 (122)
49 cd04583 CBS_pair_ABC_OpuCA_ass 99.3 5.3E-11 1.1E-15 107.7 12.3 107 614-774 2-108 (109)
50 cd04801 CBS_pair_M50_like This 99.3 5.8E-11 1.2E-15 108.8 12.4 109 615-774 2-113 (114)
51 cd04624 CBS_pair_11 The CBS do 99.3 6E-11 1.3E-15 108.1 12.4 111 615-775 2-112 (112)
52 cd04607 CBS_pair_NTP_transfera 99.3 6E-11 1.3E-15 108.5 12.4 109 616-774 4-112 (113)
53 cd04623 CBS_pair_10 The CBS do 99.3 6.2E-11 1.4E-15 107.8 12.3 111 615-774 2-112 (113)
54 cd04582 CBS_pair_ABC_OpuCA_ass 99.2 6E-11 1.3E-15 107.0 11.8 104 615-774 2-105 (106)
55 cd04595 CBS_pair_DHH_polyA_Pol 99.2 7.7E-11 1.7E-15 107.1 12.4 108 614-774 2-109 (110)
56 cd04614 CBS_pair_1 The CBS dom 99.2 4.9E-11 1.1E-15 106.4 10.9 95 614-774 1-95 (96)
57 cd04635 CBS_pair_22 The CBS do 99.2 4.6E-11 1E-15 110.6 10.9 120 615-774 2-121 (122)
58 cd04613 CBS_pair_SpoIVFB_EriC_ 99.2 6E-11 1.3E-15 108.1 11.5 112 615-774 2-113 (114)
59 cd04629 CBS_pair_16 The CBS do 99.2 3.8E-11 8.3E-16 109.7 10.2 112 615-774 2-113 (114)
60 cd04615 CBS_pair_2 The CBS dom 99.2 7E-11 1.5E-15 107.8 11.5 111 615-774 2-112 (113)
61 cd04631 CBS_pair_18 The CBS do 99.2 7E-11 1.5E-15 109.9 11.8 123 615-775 2-125 (125)
62 cd04630 CBS_pair_17 The CBS do 99.2 8.7E-11 1.9E-15 107.7 12.2 112 615-774 2-113 (114)
63 cd04627 CBS_pair_14 The CBS do 99.2 1E-10 2.2E-15 108.9 12.4 120 615-773 2-121 (123)
64 cd04636 CBS_pair_23 The CBS do 99.2 7.2E-11 1.6E-15 111.4 11.5 128 615-774 2-131 (132)
65 PRK07107 inosine 5-monophospha 99.2 4.7E-11 1E-15 136.6 11.6 145 581-775 66-218 (502)
66 cd04620 CBS_pair_7 The CBS dom 99.2 1.3E-10 2.8E-15 106.6 12.2 110 615-774 2-114 (115)
67 TIGR01137 cysta_beta cystathio 99.2 5E-11 1.1E-15 136.8 11.4 145 579-775 307-452 (454)
68 cd04604 CBS_pair_KpsF_GutQ_ass 99.2 1.1E-10 2.4E-15 106.4 11.4 111 615-774 3-113 (114)
69 cd04626 CBS_pair_13 The CBS do 99.2 1.4E-10 3E-15 105.6 11.8 109 615-774 2-110 (111)
70 cd04588 CBS_pair_CAP-ED_DUF294 99.2 2E-10 4.3E-15 104.3 12.7 109 614-774 1-109 (110)
71 cd04602 CBS_pair_IMPDH_2 This 99.2 1.2E-10 2.7E-15 106.8 11.3 109 615-774 3-113 (114)
72 cd04632 CBS_pair_19 The CBS do 99.2 1.5E-10 3.3E-15 108.4 12.0 126 615-774 2-127 (128)
73 cd04622 CBS_pair_9 The CBS dom 99.2 2.3E-10 5.1E-15 104.3 12.6 111 615-774 2-112 (113)
74 cd04591 CBS_pair_EriC_assoc_eu 99.2 2E-10 4.3E-15 104.2 12.0 100 614-774 2-104 (105)
75 cd04587 CBS_pair_CAP-ED_DUF294 99.2 1.7E-10 3.7E-15 105.1 11.7 111 615-774 2-112 (113)
76 cd04642 CBS_pair_29 The CBS do 99.2 1.7E-10 3.7E-15 107.9 11.9 124 615-774 2-125 (126)
77 cd04599 CBS_pair_GGDEF_assoc2 99.2 1.4E-10 3.1E-15 104.2 11.0 103 615-774 2-104 (105)
78 cd04601 CBS_pair_IMPDH This cd 99.2 1.2E-10 2.7E-15 105.4 10.6 107 614-774 2-109 (110)
79 cd04637 CBS_pair_24 The CBS do 99.2 1.8E-10 3.8E-15 106.8 11.8 120 615-775 2-122 (122)
80 cd04643 CBS_pair_30 The CBS do 99.2 1.4E-10 3E-15 106.3 11.0 114 615-774 2-115 (116)
81 cd04611 CBS_pair_PAS_GGDEF_DUF 99.2 2.6E-10 5.5E-15 103.5 12.6 109 615-774 2-110 (111)
82 cd04585 CBS_pair_ACT_assoc2 Th 99.2 2E-10 4.3E-15 105.9 11.9 120 615-774 2-121 (122)
83 PTZ00314 inosine-5'-monophosph 99.2 1.1E-10 2.3E-15 133.9 12.2 125 607-785 97-223 (495)
84 TIGR01302 IMP_dehydrog inosine 99.2 1.4E-10 3E-15 132.2 12.8 121 605-776 79-200 (450)
85 TIGR01303 IMP_DH_rel_1 IMP deh 99.2 8.2E-11 1.8E-15 133.8 10.8 121 602-778 84-204 (475)
86 cd04800 CBS_pair_CAP-ED_DUF294 99.2 2.7E-10 5.9E-15 103.6 12.2 110 614-774 1-110 (111)
87 TIGR00400 mgtE Mg2+ transporte 99.2 7.1E-11 1.5E-15 134.8 9.7 123 603-780 128-255 (449)
88 cd04621 CBS_pair_8 The CBS dom 99.2 2.2E-10 4.9E-15 108.9 11.5 133 615-774 2-134 (135)
89 PRK14869 putative manganese-de 99.2 1.1E-10 2.3E-15 137.0 11.1 164 606-777 68-304 (546)
90 cd04612 CBS_pair_SpoIVFB_EriC_ 99.2 3.7E-10 8E-15 102.5 12.1 110 614-774 1-110 (111)
91 cd04640 CBS_pair_27 The CBS do 99.1 1.9E-10 4.1E-15 107.7 10.3 117 615-774 2-125 (126)
92 cd04802 CBS_pair_3 The CBS dom 99.1 5.1E-10 1.1E-14 102.0 12.8 110 615-774 2-111 (112)
93 cd04590 CBS_pair_CorC_HlyC_ass 99.1 4.1E-10 8.9E-15 102.4 12.2 110 615-775 2-111 (111)
94 cd04589 CBS_pair_CAP-ED_DUF294 99.1 4.5E-10 9.8E-15 102.2 12.4 109 615-774 2-110 (111)
95 PRK05567 inosine 5'-monophosph 99.1 1.9E-10 4.1E-15 132.4 12.2 117 606-776 87-204 (486)
96 cd02205 CBS_pair The CBS domai 99.1 4.3E-10 9.4E-15 101.2 12.0 111 615-774 2-112 (113)
97 cd04609 CBS_pair_PALP_assoc2 T 99.1 2.8E-10 6.1E-15 102.9 10.8 109 615-775 2-110 (110)
98 cd04610 CBS_pair_ParBc_assoc T 99.1 4.2E-10 9E-15 101.5 11.0 105 614-774 2-106 (107)
99 cd04625 CBS_pair_12 The CBS do 99.1 7.2E-10 1.6E-14 101.0 12.2 110 615-774 2-111 (112)
100 PF00654 Voltage_CLC: Voltage 99.1 8.9E-10 1.9E-14 122.2 15.3 185 103-312 162-353 (355)
101 COG0517 FOG: CBS domain [Gener 99.1 1E-09 2.2E-14 100.6 13.2 114 609-773 2-117 (117)
102 TIGR00393 kpsF KpsF/GutQ famil 99.1 3.1E-10 6.7E-15 120.9 11.1 114 605-768 154-268 (268)
103 cd04606 CBS_pair_Mg_transporte 99.1 3E-10 6.6E-15 103.2 9.3 102 619-775 2-108 (109)
104 cd04594 CBS_pair_EriC_assoc_ar 99.1 7.9E-10 1.7E-14 99.7 11.4 100 617-774 4-103 (104)
105 PLN02274 inosine-5'-monophosph 99.1 3.5E-10 7.5E-15 129.8 11.2 116 611-777 105-222 (505)
106 cd04584 CBS_pair_ACT_assoc Thi 99.1 8.1E-10 1.8E-14 102.0 11.2 119 615-774 2-120 (121)
107 cd04633 CBS_pair_20 The CBS do 99.1 8.6E-10 1.9E-14 101.9 11.0 119 615-774 2-120 (121)
108 COG0038 EriC Chloride channel 99.1 3.3E-09 7.1E-14 120.5 17.8 181 106-315 236-418 (443)
109 PRK11573 hypothetical protein; 99.1 7.1E-10 1.5E-14 124.8 12.3 132 603-783 184-317 (413)
110 cd04598 CBS_pair_GGDEF_assoc T 99.1 1.1E-09 2.4E-14 100.9 10.9 113 615-774 2-118 (119)
111 PRK03655 putative ion channel 99.0 4.8E-09 1E-13 118.0 17.6 172 104-312 222-397 (414)
112 cd04634 CBS_pair_21 The CBS do 99.0 2.3E-09 4.9E-14 102.9 12.6 142 614-774 1-142 (143)
113 cd04638 CBS_pair_25 The CBS do 99.0 1.8E-09 3.9E-14 97.4 10.9 104 615-774 2-105 (106)
114 cd03684 ClC_3_like ClC-3-like 99.0 5.2E-09 1.1E-13 119.2 15.3 193 103-314 205-426 (445)
115 COG2905 Predicted signal-trans 98.9 1.4E-09 3E-14 120.9 8.2 124 605-778 148-271 (610)
116 COG1253 TlyC Hemolysins and re 98.9 7.5E-09 1.6E-13 117.5 13.2 130 603-783 203-334 (429)
117 cd04592 CBS_pair_EriC_assoc_eu 98.9 1.2E-08 2.5E-13 97.0 11.3 116 615-756 2-117 (133)
118 cd03685 ClC_6_like ClC-6-like 98.9 3.2E-08 6.8E-13 113.5 16.2 168 102-314 274-441 (466)
119 COG2239 MgtE Mg/Co/Ni transpor 98.8 5.2E-09 1.1E-13 117.4 7.7 120 606-780 132-256 (451)
120 COG4536 CorB Putative Mg2+ and 98.8 1.3E-08 2.7E-13 108.2 8.8 129 603-781 197-328 (423)
121 cd01036 ClC_euk Chloride chann 98.8 5.1E-08 1.1E-12 110.4 14.0 170 103-314 234-409 (416)
122 PF00571 CBS: CBS domain CBS d 98.6 2.8E-08 6E-13 79.5 4.3 54 720-776 2-55 (57)
123 cd03683 ClC_1_like ClC-1-like 98.6 3.1E-07 6.7E-12 104.3 13.5 184 349-577 2-202 (426)
124 PF00571 CBS: CBS domain CBS d 98.6 1.3E-07 2.9E-12 75.5 6.4 56 608-668 1-56 (57)
125 COG4535 CorC Putative Mg2+ and 98.5 1E-07 2.2E-12 95.2 5.8 127 604-781 65-193 (293)
126 KOG2550 IMP dehydrogenase/GMP 98.3 1E-06 2.2E-11 94.6 7.9 118 615-786 117-234 (503)
127 KOG1764 5'-AMP-activated prote 98.3 3.2E-06 6.9E-11 94.0 10.1 124 615-779 238-361 (381)
128 TIGR01186 proV glycine betaine 98.2 7.3E-06 1.6E-10 90.9 11.3 109 615-778 251-359 (363)
129 PRK10070 glycine betaine trans 98.2 7.2E-06 1.6E-10 92.1 10.6 118 606-778 274-394 (400)
130 COG3448 CBS-domain-containing 98.1 1.2E-06 2.5E-11 90.4 2.1 57 716-775 244-300 (382)
131 PRK14869 putative manganese-de 97.9 4.6E-06 1E-10 98.1 3.1 160 588-775 222-391 (546)
132 cd04597 CBS_pair_DRTGG_assoc2 97.8 2.7E-05 5.9E-10 71.5 4.6 55 717-774 58-112 (113)
133 TIGR00400 mgtE Mg2+ transporte 97.7 3.4E-05 7.3E-10 88.4 4.4 111 606-776 195-305 (449)
134 cd04597 CBS_pair_DRTGG_assoc2 97.6 7.6E-05 1.6E-09 68.6 5.6 54 606-664 58-111 (113)
135 cd04603 CBS_pair_KefB_assoc Th 97.5 0.00013 2.8E-09 66.3 5.6 55 606-665 56-110 (111)
136 COG2524 Predicted transcriptio 97.5 0.00013 2.8E-09 74.5 5.5 59 605-668 233-291 (294)
137 cd04619 CBS_pair_6 The CBS dom 97.4 0.00018 4E-09 65.6 5.2 56 605-665 58-113 (114)
138 COG3620 Predicted transcriptio 97.4 8.8E-05 1.9E-09 70.3 2.8 62 715-780 63-124 (187)
139 cd04618 CBS_pair_5 The CBS dom 97.3 0.00031 6.7E-09 62.7 4.8 49 726-776 2-50 (98)
140 cd04641 CBS_pair_28 The CBS do 97.2 0.0005 1.1E-08 63.3 5.0 48 726-776 2-49 (120)
141 cd04600 CBS_pair_HPP_assoc Thi 97.1 0.0006 1.3E-08 62.8 5.0 56 605-665 68-123 (124)
142 cd04606 CBS_pair_Mg_transporte 97.1 0.00073 1.6E-08 61.0 5.4 57 605-666 52-108 (109)
143 cd04607 CBS_pair_NTP_transfera 97.1 0.00076 1.6E-08 61.2 5.5 54 606-664 58-111 (113)
144 cd04614 CBS_pair_1 The CBS dom 97.1 0.00084 1.8E-08 59.6 5.2 47 726-775 2-48 (96)
145 cd04627 CBS_pair_14 The CBS do 97.1 0.00088 1.9E-08 61.9 5.6 52 608-664 70-121 (123)
146 cd04585 CBS_pair_ACT_assoc2 Th 97.1 0.00095 2.1E-08 61.0 5.6 57 604-665 65-121 (122)
147 cd04620 CBS_pair_7 The CBS dom 97.0 0.00093 2E-08 60.7 5.4 56 605-665 57-114 (115)
148 cd04592 CBS_pair_EriC_assoc_eu 97.0 0.00083 1.8E-08 63.7 5.1 49 726-777 2-50 (133)
149 smart00116 CBS Domain in cysta 97.0 0.00082 1.8E-08 50.1 4.0 45 727-774 2-46 (49)
150 cd04615 CBS_pair_2 The CBS dom 97.0 0.0012 2.6E-08 59.8 5.7 56 604-664 56-111 (113)
151 cd04625 CBS_pair_12 The CBS do 97.0 0.0011 2.3E-08 60.0 5.3 54 606-665 58-111 (112)
152 PRK05567 inosine 5'-monophosph 97.0 0.0012 2.7E-08 76.3 7.1 57 606-667 147-204 (486)
153 cd04617 CBS_pair_4 The CBS dom 97.0 0.00079 1.7E-08 61.8 4.4 59 605-665 57-117 (118)
154 cd04596 CBS_pair_DRTGG_assoc T 97.0 0.0012 2.5E-08 59.5 5.4 56 605-665 52-107 (108)
155 cd04608 CBS_pair_PALP_assoc Th 97.0 0.0013 2.7E-08 61.4 5.6 51 725-778 2-52 (124)
156 cd04621 CBS_pair_8 The CBS dom 96.9 0.0016 3.4E-08 61.8 6.1 56 604-665 79-134 (135)
157 KOG0475 Cl- channel CLC-3 and 96.9 0.0031 6.8E-08 71.9 9.3 188 106-314 310-511 (696)
158 cd04630 CBS_pair_17 The CBS do 96.9 0.0015 3.2E-08 59.4 5.5 55 605-665 59-113 (114)
159 smart00116 CBS Domain in cysta 96.9 0.0026 5.6E-08 47.3 6.0 47 616-667 2-48 (49)
160 cd04604 CBS_pair_KpsF_GutQ_ass 96.9 0.0016 3.4E-08 58.9 5.4 55 606-665 59-113 (114)
161 cd04803 CBS_pair_15 The CBS do 96.9 0.0015 3.3E-08 60.0 5.3 57 604-665 65-121 (122)
162 cd04610 CBS_pair_ParBc_assoc T 96.9 0.0017 3.7E-08 58.0 5.5 54 606-664 52-105 (107)
163 cd04587 CBS_pair_CAP-ED_DUF294 96.9 0.0014 3.1E-08 59.1 5.0 54 606-664 58-111 (113)
164 cd04611 CBS_pair_PAS_GGDEF_DUF 96.9 0.0018 3.9E-08 58.2 5.6 56 604-664 54-109 (111)
165 KOG1764 5'-AMP-activated prote 96.9 0.0042 9.2E-08 69.4 9.6 133 614-785 162-294 (381)
166 cd04635 CBS_pair_22 The CBS do 96.9 0.0014 3.1E-08 60.1 4.9 57 604-665 65-121 (122)
167 cd04639 CBS_pair_26 The CBS do 96.8 0.0015 3.4E-08 58.8 5.1 55 606-665 56-110 (111)
168 PRK10892 D-arabinose 5-phospha 96.8 0.0017 3.7E-08 71.4 6.1 55 605-665 268-322 (326)
169 cd04613 CBS_pair_SpoIVFB_EriC_ 96.8 0.0019 4.1E-08 58.3 5.4 55 606-665 58-113 (114)
170 cd04602 CBS_pair_IMPDH_2 This 96.8 0.0021 4.5E-08 58.5 5.4 54 606-664 57-112 (114)
171 cd04582 CBS_pair_ABC_OpuCA_ass 96.8 0.0026 5.6E-08 56.8 5.9 53 607-664 52-104 (106)
172 cd04583 CBS_pair_ABC_OpuCA_ass 96.8 0.0022 4.8E-08 57.4 5.5 54 606-664 54-107 (109)
173 cd04631 CBS_pair_18 The CBS do 96.8 0.0018 3.9E-08 59.7 5.0 56 605-665 69-124 (125)
174 cd04802 CBS_pair_3 The CBS dom 96.8 0.0024 5.2E-08 57.6 5.6 54 605-664 57-110 (112)
175 cd04623 CBS_pair_10 The CBS do 96.8 0.0026 5.7E-08 57.2 5.9 55 605-665 58-112 (113)
176 cd04601 CBS_pair_IMPDH This cd 96.8 0.0021 4.7E-08 57.6 5.2 55 605-664 53-108 (110)
177 cd04624 CBS_pair_11 The CBS do 96.8 0.0025 5.5E-08 57.5 5.7 48 726-776 2-49 (112)
178 PRK11543 gutQ D-arabinose 5-ph 96.7 0.0013 2.8E-08 72.1 4.4 57 717-776 197-255 (321)
179 cd04622 CBS_pair_9 The CBS dom 96.7 0.0019 4.2E-08 58.3 4.9 55 606-665 58-112 (113)
180 cd04595 CBS_pair_DHH_polyA_Pol 96.7 0.0027 5.9E-08 57.1 5.8 54 605-664 55-108 (110)
181 cd04800 CBS_pair_CAP-ED_DUF294 96.7 0.0022 4.7E-08 57.8 5.1 55 605-665 56-110 (111)
182 cd04591 CBS_pair_EriC_assoc_eu 96.7 0.0025 5.4E-08 57.5 5.4 49 611-665 56-104 (105)
183 cd04586 CBS_pair_BON_assoc Thi 96.7 0.0017 3.7E-08 61.1 4.5 55 605-665 80-134 (135)
184 cd04588 CBS_pair_CAP-ED_DUF294 96.7 0.0025 5.3E-08 57.3 5.4 54 606-664 55-108 (110)
185 cd04605 CBS_pair_MET2_assoc Th 96.7 0.0025 5.5E-08 57.3 5.2 54 607-665 56-109 (110)
186 COG0517 FOG: CBS domain [Gener 96.7 0.003 6.4E-08 57.3 5.7 52 607-663 63-116 (117)
187 PRK07807 inosine 5-monophospha 96.7 0.0027 5.8E-08 73.0 6.6 59 606-669 148-206 (479)
188 COG4109 Predicted transcriptio 96.7 0.0028 6E-08 67.6 6.0 62 603-669 246-307 (432)
189 PRK07107 inosine 5-monophospha 96.7 0.0025 5.5E-08 73.6 6.3 58 605-667 160-219 (502)
190 cd04589 CBS_pair_CAP-ED_DUF294 96.7 0.003 6.6E-08 56.9 5.6 55 605-665 56-110 (111)
191 cd04612 CBS_pair_SpoIVFB_EriC_ 96.7 0.0033 7E-08 56.5 5.7 55 606-665 56-110 (111)
192 cd04629 CBS_pair_16 The CBS do 96.6 0.0025 5.4E-08 57.6 4.8 55 605-665 59-113 (114)
193 cd04599 CBS_pair_GGDEF_assoc2 96.6 0.0033 7.2E-08 55.9 5.5 53 606-664 51-103 (105)
194 cd04642 CBS_pair_29 The CBS do 96.6 0.0041 8.9E-08 57.7 6.2 52 609-665 74-125 (126)
195 cd04636 CBS_pair_23 The CBS do 96.6 0.0038 8.2E-08 58.5 6.0 55 605-665 77-131 (132)
196 TIGR01303 IMP_DH_rel_1 IMP deh 96.6 0.0032 7E-08 72.2 6.5 59 606-669 146-204 (475)
197 cd04643 CBS_pair_30 The CBS do 96.6 0.0029 6.2E-08 57.4 4.9 49 726-777 2-50 (116)
198 cd04626 CBS_pair_13 The CBS do 96.6 0.0034 7.4E-08 56.6 5.3 53 606-664 57-109 (111)
199 cd04633 CBS_pair_20 The CBS do 96.6 0.0031 6.7E-08 57.8 5.1 56 604-665 65-120 (121)
200 cd04594 CBS_pair_EriC_assoc_ar 96.6 0.0033 7.2E-08 56.2 5.2 53 607-665 51-103 (104)
201 cd04801 CBS_pair_M50_like This 96.6 0.0022 4.8E-08 58.2 4.0 55 605-664 56-112 (114)
202 cd04640 CBS_pair_27 The CBS do 96.6 0.0033 7.1E-08 58.5 5.2 46 726-774 2-47 (126)
203 PLN02274 inosine-5'-monophosph 96.6 0.0037 8E-08 72.4 6.7 60 605-669 162-223 (505)
204 COG2905 Predicted signal-trans 96.5 0.0023 5.1E-08 72.3 4.2 64 718-784 150-213 (610)
205 TIGR01137 cysta_beta cystathio 96.5 0.0027 5.9E-08 73.0 5.0 59 716-777 334-392 (454)
206 cd04593 CBS_pair_EriC_assoc_ba 96.5 0.0042 9.1E-08 56.4 5.2 48 726-776 2-49 (115)
207 cd04632 CBS_pair_19 The CBS do 96.4 0.0042 9.1E-08 57.7 5.1 57 605-664 70-126 (128)
208 cd04637 CBS_pair_24 The CBS do 96.4 0.0048 1E-07 56.6 5.4 55 606-665 67-121 (122)
209 cd04584 CBS_pair_ACT_assoc Thi 96.4 0.005 1.1E-07 56.3 5.5 55 604-664 65-119 (121)
210 TIGR00393 kpsF KpsF/GutQ famil 96.4 0.0033 7.2E-08 66.9 4.7 58 716-776 154-212 (268)
211 cd04590 CBS_pair_CorC_HlyC_ass 96.3 0.005 1.1E-07 55.4 4.8 50 726-778 2-52 (111)
212 TIGR01302 IMP_dehydrog inosine 96.3 0.0053 1.1E-07 70.4 5.9 59 713-774 76-137 (450)
213 cd02205 CBS_pair The CBS domai 96.2 0.0081 1.8E-07 53.3 5.5 50 726-778 2-51 (113)
214 PTZ00314 inosine-5'-monophosph 96.0 0.0077 1.7E-07 69.7 5.4 58 605-667 158-217 (495)
215 cd04598 CBS_pair_GGDEF_assoc T 96.0 0.012 2.5E-07 53.7 5.5 55 605-664 60-117 (119)
216 cd04609 CBS_pair_PALP_assoc2 T 95.9 0.012 2.6E-07 52.6 5.0 53 606-665 57-109 (110)
217 cd04638 CBS_pair_25 The CBS do 95.8 0.014 3E-07 52.2 5.0 53 607-665 53-105 (106)
218 TIGR03415 ABC_choXWV_ATP choli 95.8 0.014 3E-07 65.3 6.0 49 724-777 332-380 (382)
219 cd04634 CBS_pair_21 The CBS do 95.8 0.017 3.6E-07 55.1 5.7 54 605-664 88-141 (143)
220 TIGR03520 GldE gliding motilit 95.6 0.012 2.6E-07 66.6 4.8 57 717-775 191-249 (408)
221 KOG0474 Cl- channel CLC-7 and 95.6 0.034 7.4E-07 63.7 8.0 114 467-584 181-309 (762)
222 PRK15094 magnesium/cobalt effl 95.3 0.025 5.4E-07 61.1 5.6 57 607-669 134-190 (292)
223 COG2239 MgtE Mg/Co/Ni transpor 95.1 0.022 4.7E-07 64.8 4.7 61 604-669 194-254 (451)
224 COG4175 ProV ABC-type proline/ 95.0 0.018 4E-07 61.3 3.4 49 725-777 335-383 (386)
225 TIGR01186 proV glycine betaine 94.7 0.053 1.1E-06 60.4 6.2 57 607-669 303-359 (363)
226 PRK10070 glycine betaine trans 92.7 0.19 4.1E-06 56.8 6.1 57 607-669 338-394 (400)
227 KOG2550 IMP dehydrogenase/GMP 91.7 0.18 3.9E-06 55.2 4.1 57 605-666 170-226 (503)
228 KOG2118 Predicted membrane pro 90.5 0.32 7E-06 56.3 5.0 131 603-783 201-334 (498)
229 PRK11573 hypothetical protein; 89.2 0.51 1.1E-05 53.6 5.3 55 719-775 189-245 (413)
230 KOG0476 Cl- channel CLC-2 and 85.3 4.1 9E-05 48.3 9.5 67 716-783 587-653 (931)
231 TIGR03415 ABC_choXWV_ATP choli 82.9 2.3 5.1E-05 47.7 6.2 55 607-669 327-381 (382)
232 COG1253 TlyC Hemolysins and re 81.1 7 0.00015 44.7 9.4 50 615-669 280-329 (429)
233 TIGR02865 spore_II_E stage II 77.0 2E+02 0.0043 35.7 23.1 83 505-588 197-289 (764)
234 COG4175 ProV ABC-type proline/ 73.5 6.1 0.00013 42.7 5.5 53 611-669 332-384 (386)
235 PRK09765 PTS system 2-O-a-mann 72.8 2E+02 0.0044 34.7 18.9 43 264-317 526-570 (631)
236 COG1125 OpuBA ABC-type proline 69.2 5.2 0.00011 42.0 3.8 42 731-775 267-308 (309)
237 COG4535 CorC Putative Mg2+ and 64.4 28 0.00062 36.0 7.8 52 613-669 139-190 (293)
238 PF10518 TAT_signal: TAT (twin 62.0 5.2 0.00011 26.6 1.4 23 258-280 3-25 (26)
239 PRK02509 hypothetical protein; 51.3 4.2E+02 0.0092 33.4 16.0 21 347-367 325-345 (973)
240 KOG0236 Sulfate/bicarbonate/ox 51.0 1.4E+02 0.003 36.3 12.1 20 258-277 361-380 (665)
241 PF01102 Glycophorin_A: Glycop 44.8 30 0.00065 32.3 4.0 17 350-366 66-82 (122)
242 PRK14216 camphor resistance pr 43.9 64 0.0014 30.6 6.2 50 259-315 6-55 (132)
243 PF06072 Herpes_US9: Alphaherp 43.6 1.3E+02 0.0028 24.2 6.7 17 77-93 3-19 (60)
244 COG1125 OpuBA ABC-type proline 42.1 38 0.00083 35.8 4.7 35 626-665 273-307 (309)
245 PF10399 UCR_Fe-S_N: Ubiquitin 38.1 19 0.0004 26.9 1.3 20 255-274 7-28 (41)
246 COG4536 CorB Putative Mg2+ and 36.6 76 0.0017 35.2 6.1 49 615-668 276-324 (423)
247 PF04550 Phage_holin_2: Phage 35.9 1.9E+02 0.0041 25.4 7.1 65 473-539 9-73 (89)
248 PF10754 DUF2569: Protein of u 33.4 4.4E+02 0.0096 25.3 11.3 26 102-127 7-32 (149)
249 COG0730 Predicted permeases [G 33.1 5.2E+02 0.011 26.9 11.9 15 102-116 76-90 (258)
250 PF13829 DUF4191: Domain of un 27.0 2.4E+02 0.0051 29.3 7.5 19 150-168 52-70 (224)
251 PRK08319 cobalt transport prot 26.6 3.3E+02 0.0072 28.2 8.8 16 264-279 47-62 (224)
252 PRK11404 putative PTS system 26.0 1.1E+03 0.024 27.5 16.4 79 488-585 391-469 (482)
253 PRK11388 DNA-binding transcrip 25.9 80 0.0017 38.1 4.7 148 579-769 13-163 (638)
254 PRK09400 secE preprotein trans 25.3 2.1E+02 0.0046 23.3 5.5 28 100-127 30-58 (61)
255 PRK01844 hypothetical protein; 24.8 1.6E+02 0.0035 24.8 4.7 21 347-367 4-24 (72)
256 TIGR03546 conserved hypothetic 23.9 3.7E+02 0.008 26.2 7.9 35 256-291 12-46 (154)
257 PF09889 DUF2116: Uncharacteri 23.0 2E+02 0.0044 23.3 4.9 14 83-96 22-35 (59)
258 PF03030 H_PPase: Inorganic H+ 21.8 8.9E+02 0.019 29.5 12.0 81 503-588 333-415 (682)
259 PRK09765 PTS system 2-O-a-mann 20.5 1.5E+03 0.034 27.2 16.1 31 487-518 543-573 (631)
No 1
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-174 Score=1407.56 Aligned_cols=729 Identities=57% Similarity=0.958 Sum_probs=693.4
Q ss_pred CCCCCccccccccccCCCCchhhhhcCCCCCCCCCCcccchhhhhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003885 41 SEDHNLREPLLLKCRTNTTSQIAIVGANICPIESLDYEIVENELFKQDWRARRKVEIFQYVVFKWTLALLIGVLTGLAAV 120 (789)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~esldy~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~liGv~~Gl~a~ 120 (789)
+++..+++|++.+.+++..+++++.++++++|||||||++||+.|+|+||+|++.+.++|.+.||+++++||+++|++|+
T Consensus 24 ~~s~~l~~~l~~~~~t~~~~d~~i~~~k~~~yESLDYei~ENdlf~e~~r~~~k~~~~~y~~~kW~~~~lIGi~TgLva~ 103 (762)
T KOG0474|consen 24 RRSVALPEELTISGETQELDDLEILGAKVCDYESLDYEICENDLFLEDWRTRDKKKGRRYEAVKWMVCFLIGICTGLVAL 103 (762)
T ss_pred ccccccccchhhcCCccccchhhhhcCCCCCccccchhhhcchHHHHHHHhhcccceeeeehHHHHHHHHHHHHHHHHHH
Confidence 34445899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccc-----hhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhCCCCCCc
Q 003885 121 FCNFFVENIAGFKLLLINNLMLNDR-----HFMGFVANTSINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSI 195 (789)
Q Consensus 121 ~~~~~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~~lng~~~~~~ 195 (789)
++|.++|++.++|+..+.+.+.+.+ ++.+++.|..++++++++++.++.+++|.|+||||||||+||||+++|+.
T Consensus 104 fidl~Ven~ag~Kf~~v~~~v~~~~s~~g~~~~~~l~~~g~Nl~lv~~as~lv~~iaP~AAGSGIPevK~YLNGV~iP~i 183 (762)
T KOG0474|consen 104 FIDLFVENFAGLKFGVVQNSVEECRSQKGCLALSLLVLLGFNLVLVFLASVLVAYIAPVAAGSGIPEVKCYLNGVKIPGI 183 (762)
T ss_pred HHHHHHHHhhchhHHHHHHHHHHhhhccccHHHHHHHHHHHhHHHHHHHHHHHHeechhccCCCCchhhhhhcCccCcce
Confidence 9999999999999999988877666 99999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHhhhhhhhccccccCchhHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhHHHhhhhhhhhhhc
Q 003885 196 LAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGAAAGVAGAF 275 (789)
Q Consensus 196 l~~~~l~~K~~~~i~sv~sG~svG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv~~GaAAGvaaaF 275 (789)
+++||+++|++|++++|++|+.+||||||||.|||||+.++||+|.+++++|||+||||||+|||||++||+||||||||
T Consensus 184 vrl~TL~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S~~~r~~~r~fr~FrnDrdrRD~VscGaAAGVaAAF 263 (762)
T KOG0474|consen 184 VRLRTLIVKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGSTSLRKDWRWFRYFRNDRDRRDLVSCGAAAGVAAAF 263 (762)
T ss_pred eehhhhHHhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCccchhhhhhhhhhhcccchhhhhhhcchHHhHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchhhhHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCcceEEeccCCCCCcchhhHHHHHHH
Q 003885 276 RAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFIEFCRSGRCGLFGQGGLIMFDVNSAKNSYSSADLLAVIFL 355 (789)
Q Consensus 276 ~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~l~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~~~~l~~~i~l 355 (789)
+||+||+||++||.++||++.++||+||++++++++++.++.+|.+|+|+.|+.+++++|++.+....|+.+|+++++++
T Consensus 264 ~APvGGvLFaLEE~aS~Wnq~L~WR~fFss~i~~f~l~~~i~~~~~G~~g~f~~~GLi~f~vf~~~~~y~~~el~~f~~i 343 (762)
T KOG0474|consen 264 RAPVGGVLFALEEGASWWNQALLWRTFFSSAIVAFVLRAFILSCLSGKCGLFGKGGLINFDVFDGPVDYHIHELPPFLLI 343 (762)
T ss_pred CCCccceEEEechhhHHHHhhHHHHHHHHhHHHHHhHHHHHHHHhcCchhccCCcceEEecccCCccccccccccceeEe
Confidence 99999999999999999999999999999999999999999999999999999999999999977779999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhhhhhcccccccccCCCCCCcccCCCCCCCCCCCccc
Q 003885 356 GVIGGIFGSFYNYLVDKVLRTYSIINERGPIFKVLLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKN 435 (789)
Q Consensus 356 Gv~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~p~~g~~g~~~~ 435 (789)
||+||++|++||++|.+...++.+ +.|.+..|++++++++++|++++|.+|++.+|+|||++.....||+
T Consensus 344 GViGGlLGalfN~Ln~~~~~~r~~-~~k~k~~kvlea~~Vs~~ts~~af~l~~l~~C~P~~~~~~~~~~p~--------- 413 (762)
T KOG0474|consen 344 GVIGGLLGALFNYLNLKKVLRRYN-YEKGKIGKVLEALLVSLVTSVLAFGLPFLADCQPCPPSITEGQCPT--------- 413 (762)
T ss_pred ehhhhhHHHHHHHHHHHHHHHHHh-ccCchHHHHHHHHHHHHHHHHHHhhhHHHhcCCCCCCCcccccCcc---------
Confidence 999999999999998777766655 6678889999999999999999999999999999998865446774
Q ss_pred cccCCCcchhhhhhhccCchHHHHhhhcCCCCccchHHHHHHHHHHHHHHHHHHhcCcCCcccchHHHHHHHHHHHHHHH
Q 003885 436 FQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGN 515 (789)
Q Consensus 436 ~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~L~~~~~~k~~lt~~t~g~g~~gG~f~P~l~iGa~~G~l~g~ 515 (789)
|+||+|+||++|+|+|+|+||+|+++||+++ ++|++.+|++|++.+|+++++|||+.+|+|+|+|++++||+|||++|+
T Consensus 414 f~Cp~~~YNdlAtL~fnt~ddaVrnLFh~~~-~ef~~~tL~iFfv~yf~L~~~TfGi~vpsGlFiP~iL~GAa~GRlvg~ 492 (762)
T KOG0474|consen 414 FFCPDGEYNDLATLFFNTNDDAVRNLFHSPT-NEFGILTLAIFFVLYFFLACWTFGIAVPSGLFIPVILTGAAYGRLVGM 492 (762)
T ss_pred ccCCCCchhHHHHHHcCCcHHHHHHHhcCCC-CccchhHHHHHHHHHHHHHHHHhcccccccchhHHHHhhHHHHHHHHH
Confidence 8999999999999999999999999999987 999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCcchHHHHHHHHHhhhhhhchhhHHHHhHHHhhcCCCccHHHHHHHHHHHHHHHHhhCchhHHHHHHHcCCCcc
Q 003885 516 LLGALSDLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKTVADSFNQGVYDQIVKLKGLPYL 595 (789)
Q Consensus 516 ~~~~~~~~~~~~~alvGaaA~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~~~~iy~~~l~~kg~p~l 595 (789)
++....++|||.||++||||+|||++|||+|+|||++|+|+ ..+++|+|+++++||||+|.||++|||.++++||+|+|
T Consensus 493 ~l~~~~~id~G~yAllGAAa~LGG~mRMTvSL~VIl~E~Tn-~~~~lPiMlvLliaK~VGD~FNegiYd~~i~LkgvP~L 571 (762)
T KOG0474|consen 493 LLGSYTNIDPGLYALLGAAAFLGGVMRMTVSLCVILLELTN-NLLLLPIMLVLLIAKTVGDSFNEGIYDIIIQLKGVPFL 571 (762)
T ss_pred HHHHhhccCchHHHHHhHHHHhCCeEEEEeeeehHHHHhhh-hhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhccCCccc
Confidence 99998899999999999999999999999999999999994 57788889999999999999999999999999999999
Q ss_pred cccccccccccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccc
Q 003885 596 EAHAEPYMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQ 675 (789)
Q Consensus 596 ~~~~~~~l~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~ 675 (789)
+++++++|++++|+|+|++|+++++..++|+.++++|+++.||+|||||+.+.++.++++|+|.|+||+++|++++|.++
T Consensus 572 e~~pe~~mr~L~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~ 651 (762)
T KOG0474|consen 572 EWEPEPYMRNLTAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEE 651 (762)
T ss_pred cCCCchHhhhhhHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999876677899999999999999999998755
Q ss_pred ccc-CCcccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEe
Q 003885 676 KTM-TGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVV 754 (789)
Q Consensus 676 ~~~-~~~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVV 754 (789)
..+ .+....+.++.+|+++ +.++++|+.++++|+++++|++|+||++||+|+++||+.+++.+||+.|+||+.||
T Consensus 652 ~~~~~~~~~~~~~~~~d~a~----r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv 727 (762)
T KOG0474|consen 652 SRSTFDLPVRRKFTFRDFAK----REPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVV 727 (762)
T ss_pred CccccCcchhhcCCHHHhhh----cCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEe
Confidence 433 3333456788888886 56699999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCEEEEEecccCcchhhhccCccccccC
Q 003885 755 PKTPGRPPIVGILTRHDFMPEHVLGLYPHIVNRH 788 (789)
Q Consensus 755 d~~~~~~~vvGIITr~DLl~~~~~~~~~~l~~~~ 788 (789)
++ .++++||+||+|+++++..+++|++.+.+
T Consensus 728 ~~---~~~~~gilTR~D~~~~~~l~~~~~v~~~~ 758 (762)
T KOG0474|consen 728 PK---TNRVVGILTRKDLARYRILGLEPHVDELK 758 (762)
T ss_pred cC---CCceeEEEehhhhhhHHHhcccccccccc
Confidence 98 78899999999999999999999998765
No 2
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-87 Score=733.95 Aligned_cols=586 Identities=31% Similarity=0.500 Sum_probs=471.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------hh----------h-hccchhhHHHHHH
Q 003885 107 LALLIGVLTGLAAVFCNFFVENIAGFKLLLIN---------------------NL----------M-LNDRHFMGFVANT 154 (789)
Q Consensus 107 ~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~---------------------~~----------~-~~~~~~~~~~~~~ 154 (789)
-.++||...|..+.+.+...+| ++|-+.+. .+ . -.+.+...|++|+
T Consensus 57 g~~~IGl~ag~la~~~di~~~w--D~k~G~C~~~~~~n~~~CC~t~~~~~~c~~~~~w~~~~~~~~~w~~~~~~~~l~y~ 134 (696)
T KOG0475|consen 57 GVLLIGLAAGFLAGLADILTSW--DLKEGYCTPNFWLNHEFCCSTFTEDDVCKEWFFWCEHLGLDFSWTGHYIVSYLIYV 134 (696)
T ss_pred hhhHhHhHHHHhhHHHHhhcch--hhccCcccchhhhhhhhheeeeecCccchhhhhhHHHhccccCCCCcchHHHHHHH
Confidence 3578888888888888888776 33322210 00 0 0123446899999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhCCCCCCccchhhHHHHHHhhhhhhhccccccCchhHHHHHHHHHHH
Q 003885 155 SINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANL 234 (789)
Q Consensus 155 ~~~~~~~~~a~~l~~~~~p~a~GsGipev~~~lng~~~~~~l~~~~l~~K~~~~i~sv~sG~svG~EGP~vhiGa~igs~ 234 (789)
.+++.++.++..+++.++|.|.||||||+|+.++|..+++++..+|++.|.++..++++||+|+|||||+||++.|+|+.
T Consensus 135 ~~al~fa~la~~lv~~~AP~A~gSGIpEIK~ilSGf~~~~~lg~~tl~iKsVal~lsvaSGLSlGKEGP~VHiA~c~g~~ 214 (696)
T KOG0475|consen 135 LWALLFAFLAVSLVKVVAPYACGSGIPEIKTILSGFIIRGFLGKWTLLIKSVALCLSVASGLSLGKEGPSVHIATCIGNI 214 (696)
T ss_pred HHHHHHHHHHHHHhhheehhhhcCCCccceeeeccchhhhhhhHHHHhhhhhhheeeeccccccCCCCCceeeeechhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCccccchhhhhhc-ccCChhhhhhHHHhhhhhhhhhhccCcchhhhHHHhHhhhhhhhhhHHHHHHHHHHHHHHHH
Q 003885 235 LGQGGSKKYHLTWRWLR-YFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLR 313 (789)
Q Consensus 235 l~~~~s~~~~l~~~~~~-~f~~~~~~r~lv~~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~ 313 (789)
+++ +++ |-+|...+|+.++|.+|||||+|||||||||||++||+++++..+++|+.|||+.+|+++++
T Consensus 215 ~s~-----------~f~~~~~~e~~~reilsAaaAaGvavaFgAPIGGVlFslEev~~~fp~ktlw~sff~aLsAv~~L~ 283 (696)
T KOG0475|consen 215 FSK-----------IFPKYRLNEAKKREILSAAAAAGVAVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALSAVTALR 283 (696)
T ss_pred Hhh-----------hhhhhccchhHHHHHHHHHhhccchhhcCCccceeeeehhhhhhcCCccchHHHHHHHHHHHHHHe
Confidence 987 333 33588899999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhhcCcccccCCCcceEEeccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhHHHHHH
Q 003885 314 GFIEFCRSGRCGLFGQGGLIMFDVNSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFKVLLVA 393 (789)
Q Consensus 314 ~l~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~~~~l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (789)
.+ ..|+++....|.+.. +.+|++.|+++|+++|++||+.|.+|.+++.++.++++.. +...+++++++
T Consensus 284 ~i---------~pf~~~~~vLf~V~Y-~~~W~~~EL~pFi~LGifgGl~G~~~ir~n~~~~~~rK~~--~lg~~pv~ev~ 351 (696)
T KOG0475|consen 284 SI---------NPFGNSRLVLFYVDY-DRPWSLFELLPFILLGIFGGLWGAFFIRLNIRFCRFRKSS--KLGKFPVLEVV 351 (696)
T ss_pred ee---------cccCCCceEEEEEec-cCCcccccchHHHHHHHhhhHHHHHHHHHHHHHHhccchh--hccCCcchhHH
Confidence 75 678888888888885 7899999999999999999999999999999999988765 34567899999
Q ss_pred HHHHHhhhhhcccccccccCCCCCCcccCCCCCCCCCCCccccccCCCcchhhhhhhccCchHHHHhhhcCCCCccchHH
Q 003885 394 AVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKEFHLS 473 (789)
Q Consensus 394 ~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~ 473 (789)
+++++|++++|+.|++..-...-.+.-.++|+.... .++ . ++..--...
T Consensus 352 ~vt~iTaiIs~~np~~r~~~~e~i~~Lf~~C~~~~s--------------~~l------------~-----~~~~~~~~~ 400 (696)
T KOG0475|consen 352 FVTLVTAIISLFNPETRFNMSELITILFNKCSPSSS--------------TSL------------P-----ETTVYSAAI 400 (696)
T ss_pred HHHHHHHHHHhcCHHHHhhHHHHHHHHHhhcCCccc--------------ccC------------c-----ccchHHHHH
Confidence 999999999999998731000000000122321110 000 0 000001234
Q ss_pred HHHHHHHHHHHHHHHHhcCcCCcccchHHHHHHHHHHHHHHHHhhhc-----------cCcchHHHHHHHHHhhhhhhch
Q 003885 474 TLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGAL-----------SDLDTGLFALLGAASFLGGTMR 542 (789)
Q Consensus 474 ~L~~~~~~k~~lt~~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~~-----------~~~~~~~~alvGaaA~l~g~~r 542 (789)
.|+..+++|+++|++|+|+++|+|+|+||+.+||+.||++|.+.... ..+.|+.||++||||.|+|++|
T Consensus 401 ~L~~a~i~k~~~t~ftfGakvP~GifvPSmaiGA~aGr~vG~~~e~l~~~~~~~~fg~~ci~Pg~Ya~vGaAA~LsGvtr 480 (696)
T KOG0475|consen 401 LLLLALILKIALTIFTFGAKVPAGIFVPSLAIGAIAGRAVGIIVEQLAQNPDFNLFGLSCATPGAYALVGAAATLSGVTR 480 (696)
T ss_pred HHHHHHHHHHHHHHhhhhccCccceecchHHHHHHHHHHHHHHHHHHhcCCCccccchhhcCchHHHHHHHHHHhcCcce
Confidence 56667789999999999999999999999999999999999766441 3478999999999999999999
Q ss_pred hhHHHHhHHHhhcCCCccHHHHHHHHHHHHHHHHhh-CchhHHHHHHHcCCCcccccccccccccceeecccC-----Ce
Q 003885 543 MTVSLCVILLELTNNLLMLPLVMLVLLISKTVADSF-NQGVYDQIVKLKGLPYLEAHAEPYMKNLVASDVVSG-----PL 616 (789)
Q Consensus 543 ~pis~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~-~~~iy~~~l~~kg~p~l~~~~~~~l~~l~v~dvM~~-----~v 616 (789)
+|+|++|||+|+||++.+++|+|+|+++|+||+|.+ ..+|||.++++||+||++.+.+.. +.-+.++|.+ ++
T Consensus 481 ltvtlVVImFELTG~l~~IlPlm~av~~SkwI~d~~gk~gIyda~I~~ng~P~l~~k~e~~--~t~~~~v~~p~~~~~~L 558 (696)
T KOG0475|consen 481 LTVTLVVIMFELTGALNYILPLMLAVMISKWIGDGLGKTGIYDAHIELNGYPFLDSKSEFS--STLAIPVMEPCRSESCL 558 (696)
T ss_pred eeEEEEEEeeeccCcceeHHHHHHHHHHHHHHHhccccchHHHHHHHhcCCCCcccccccc--cchhhhhhchhcCchhh
Confidence 999999999999999999999999999999999999 789999999999999997766543 3334445433 35
Q ss_pred EEecCC-CcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhccc
Q 003885 617 ITFSGV-EKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKA 695 (789)
Q Consensus 617 vtv~~~-~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 695 (789)
.++..+ +++++...+|+++++++|||+-++ ++++++|+|+|+||...+.+..-.++-. .-+...+.++
T Consensus 559 ~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~---~sq~lvGfv~rr~l~~~i~~ar~~q~~~--------~~~~~~f~~~ 627 (696)
T KOG0475|consen 559 IVITQDSMTLEDLESLMEDTDFSGFPVVLSE---DSQRLVGFVLRRNLFLAILNARKIQSFI--------VTTSIYFNDP 627 (696)
T ss_pred eeccccceeHHHHHHHHhhcccCCceEEEcc---ccceeEEEEchHHHHHHHhhhccccccc--------eecccccCCC
Confidence 666555 999999999999999999998664 4689999999999987766421100000 0000022221
Q ss_pred cCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcch
Q 003885 696 GSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPE 775 (789)
Q Consensus 696 ~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~ 775 (789)
.. ..........|+++|||.+|.+|..+++.+.+.++|++.|+|++.|.. +|++.|+||++|+++.
T Consensus 628 ~~----------~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~----~G~l~Giitkkd~l~~ 693 (696)
T KOG0475|consen 628 SP----------SAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK----NGILLGIITKKDCLRH 693 (696)
T ss_pred Cc----------cccCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc----CCeeEeeeehHHHHHh
Confidence 11 011122346899999999999999999999999999999999998876 6899999999999874
No 3
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.7e-85 Score=719.73 Aligned_cols=651 Identities=27% Similarity=0.476 Sum_probs=497.8
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHH
Q 003885 87 QDWRARRKVEIFQYVVFKWTLALLIGVLTGLAAVFCNFFVENIAGFKLLLINNLMLNDRHFMGFVANTSINLGLAILAAI 166 (789)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 166 (789)
++|..|..+.+++.....|++.+++|++++++++.+|++++.+++...+....+ ........|+.|+..++++.++++.
T Consensus 78 ~~~~~r~~q~i~r~l~eDW~flalLG~imAlvS~~mD~ai~~~~~a~~~ly~~~-~~~~~yl~yl~Wv~y~v~Li~fSA~ 156 (931)
T KOG0476|consen 78 QEFLTRQMQNIVRKLGEDWFFLALLGVIMALVSIGMDMAIESLQHAQVWLYREL-GSSHSYLAYLSWVGYPVGLVLFSAG 156 (931)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHHHHHHH
Confidence 467777777778888899999999999999999999999999988776655443 3344557888899999999999999
Q ss_pred HHHHhccCCCCCCHHHHHHHHhCCCCCCccchhhHHHHHHhhhhhhhccccccCchhHHHHHHHHHHHhhccCccccchh
Q 003885 167 LCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLT 246 (789)
Q Consensus 167 l~~~~~p~a~GsGipev~~~lng~~~~~~l~~~~l~~K~~~~i~sv~sG~svG~EGP~vhiGa~igs~l~~~~s~~~~l~ 246 (789)
.+.+++|+|.||||||+|.+|.|+...++++.||+++|++|..+++|||+++|||||+||+++++|+.+++..+
T Consensus 157 f~h~iapQAvGSGIPEmKtIlrGv~LkeYLt~KtlvAKviGLT~tLGsGlpiGKeGPFVHiasivA~~l~k~~a------ 230 (931)
T KOG0476|consen 157 FCHYIAPQAVGSGIPEMKTILRGVILKEYLTLKTLVAKVIGLTLTLGSGLPIGKEGPFVHIASIVAALLSKVTA------ 230 (931)
T ss_pred HHheeccccccCCChhHHHHHHhhhHHhhhhHHHHHHHHHHhhhhhccCCCcCCCCCchhHHHHHHHHHHHHHH------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987422
Q ss_pred hhhhcccCChhhhhhHHHhhhhhhhhhhccCcchhhhHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccc
Q 003885 247 WRWLRYFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFIEFCRSGRCGL 326 (789)
Q Consensus 247 ~~~~~~f~~~~~~r~lv~~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~l~~~~~~~~~~~ 326 (789)
+..-..|+|+....+++++|+|.|||+.|+||+|||||++|++++||..++|||.||+++++|+++|.+..|.....-.
T Consensus 231 ~~~~g~~enesR~~EmLaaaCAVGVactFsAPiGgVLfSIEvTS~yFAVrnYWRGFFAAtcsA~vFR~lavf~v~~~~t- 309 (931)
T KOG0476|consen 231 CQFGGFFENESRNMEMLAAACAVGVACTFSAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCSAFVFRLLAVFFVEAEVT- 309 (931)
T ss_pred hhccccccCcchHHHHHHHHhhhhheeeecCccceeEEEEEEeeeeeeHHHHHHHHHHHHhHHHHHHHHHHHcccchhh-
Confidence 1233567899999999999999999999999999999999999999999999999999999999999988775421111
Q ss_pred cCCCcceEEeccC-CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhcCchhHHHHHHHHHHHhhhh
Q 003885 327 FGQGGLIMFDVNS-AKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYS---IINERGPIFKVLLVAAVSLLTSCC 402 (789)
Q Consensus 327 f~~~~~~~f~~~~-~~~~~~~~~l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 402 (789)
-...|+.++ .+.+|++.|+|+|+++|++||++|++|+++.+++.-+.+ ..+.-...++++.+++++++.+.+
T Consensus 310 ----ItA~yqT~F~~d~~F~~~ELp~FallGl~cGllGa~fVylhR~ivlf~Rkn~~~~~~f~k~~llyp~~~a~v~ssl 385 (931)
T KOG0476|consen 310 ----ITALYQTSFRPDFPFDVQELPFFALLGLLCGLLGALFVYLHRRIVLFLRKNRYAKKLFQKSRLLYPAFIALVFSSL 385 (931)
T ss_pred ----hHHHHhccCCCCCCCCHHHhHHHHHHHHHHhcccceeeeeeeeeeeeehhhHHHHHHHhhCccHHHHHHHHHHhhe
Confidence 112344332 245899999999999999999999999999887643332 111112345788899999888887
Q ss_pred hcccccccccCC--CCCC--c--ccCCCCCCCCCCCccccccCCCcchhhhhhhccCchHHHHhhhcCCCCcc-chHHHH
Q 003885 403 SYGLPWLSHCIP--CPSY--L--EADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKE-FHLSTL 475 (789)
Q Consensus 403 ~~~~p~~~~c~~--~~~~--~--~~~~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~-~~~~~L 475 (789)
.|... +++-.. .... . ....|. +-..+ ...-.||+..+ .++.+. .+. -.+.+|
T Consensus 386 tfP~G-lG~f~aG~l~f~etl~~fF~Nct-w~~~~-~~~~~~~~~~~---------------~hW~~p--~g~~~~f~tL 445 (931)
T KOG0476|consen 386 TFPPG-LGQFLAGRLSFRETLVDFFDNCT-WWVQT-NDSELCPAHIL---------------THWYHP--EGDVSIFGTL 445 (931)
T ss_pred ecCCc-ccccccccccHHhHHHHHhhcCe-eeecC-CCcCCCChhhh---------------hhhcCC--CCceeeHHHH
Confidence 76321 100000 0000 0 000010 00000 00011222111 111111 122 235678
Q ss_pred HHHHHHHHHHHHHHhcCcCCcccchHHHHHHHHHHHHHHHHhhh-----------ccCcchHHHHHHHHHhhhhhhchhh
Q 003885 476 LVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGA-----------LSDLDTGLFALLGAASFLGGTMRMT 544 (789)
Q Consensus 476 ~~~~~~k~~lt~~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~-----------~~~~~~~~~alvGaaA~l~g~~r~p 544 (789)
++|+++||++++++..+.+|+|.|+|.+++||++||++|+.+.. ...+.||.||++||||| +|++.+|
T Consensus 446 ~lf~l~~F~~siia~TipvPsG~FmPvFViGAafGRlvGE~m~~lfP~Gi~~~gi~~~I~PG~YAVVGAAAf-sGaVTHT 524 (931)
T KOG0476|consen 446 VLFFLMYFWMSIIATTIPVPSGVFMPVFVIGAAFGRLVGEIMAVLFPEGIRGGGITPPIHPGGYAVVGAAAF-SGAVTHT 524 (931)
T ss_pred HHHHHHHHHHHHHHhccccCccceeeeeeechhhhhhhhhhheeecccccccCCccCccccchhhhhhhhhh-ccceeee
Confidence 99999999999999999999999999999999999999987654 13578999999999998 5666689
Q ss_pred HHHHhHHHhhcCCCccHHHHHHHHHHHHHHHHhhCchhHHHHHHHcCCCccccccccc--ccccceeecccCCeEEecCC
Q 003885 545 VSLCVILLELTNNLLMLPLVMLVLLISKTVADSFNQGVYDQIVKLKGLPYLEAHAEPY--MKNLVASDVVSGPLITFSGV 622 (789)
Q Consensus 545 is~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~~~~iy~~~l~~kg~p~l~~~~~~~--l~~l~v~dvM~~~vvtv~~~ 622 (789)
+|..||++|+||++..++|+|+|+++|++|+..+++||||.+++.|++|||+..++.. ...+.|+|+|.+|+..+..+
T Consensus 525 vSvAVIifElTGQl~hiLPVmIAVllaNAVa~~LQPSiYDSII~IKklPYLPDlpps~~~~h~v~VE~iMV~dv~yI~k~ 604 (931)
T KOG0476|consen 525 VSVAVIIFELTGQLCHILPVMIAVLLANAVAASLQPSIYDSIIRIKKLPYLPDLPPSRSSVHTVKVEHIMVTDVKYITKD 604 (931)
T ss_pred eeEEEEEEeeccchHHHHHHHHHHHHHHHHHHHhCcchhhheeeeccCCcCCCCCCcccceeEEEeeeeccccceeeecc
Confidence 9999999999999999999999999999999999999999999999999999877654 56788999999999999999
Q ss_pred CcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCcccccc------c-cC----------------
Q 003885 623 EKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQK------T-MT---------------- 679 (789)
Q Consensus 623 ~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~------~-~~---------------- 679 (789)
.|.+|+.++++.+....||+||+. ++..|+|.|.|++|..+++++.-.+.+ + +.
T Consensus 605 ~Ty~elre~l~~~~lR~~PlV~s~---esmiLlGSV~R~~L~~ll~~~ig~~~r~~~a~~r~r~~~E~~~~~~~~~~~ee 681 (931)
T KOG0476|consen 605 TTYRELREALQTTTLRSFPLVESK---ESMILLGSVARRYLTALLQRHIGPEPRLVEAQKRVRTASEIFLTIFERSKKEE 681 (931)
T ss_pred CcHHHHHHHHHhCccceeccccCc---ccceeeehhHHHHHHHHHHhhcCccHhHHHHHHHhhhhhhchhhhhhhhhccC
Confidence 999999999998889999999985 678999999999999999863211111 0 00
Q ss_pred ----Cccccccc-----------chhhhcc-------------------ccCC----------------CCC--------
Q 003885 680 ----GSDIMRRF-----------KAHDFAK-------------------AGSG----------------KGV-------- 701 (789)
Q Consensus 680 ----~~~~~~~~-----------~~~d~~~-------------------~~~~----------------~~~-------- 701 (789)
+......+ ...+-.+ ..++ ..+
T Consensus 682 ~~~r~p~~~~~~~~~~e~s~~~~~~~et~kp~~p~~~~~p~~~~~lt~~~~sG~~~~~~~s~~~~~~~~~~p~~~~~~l~ 761 (931)
T KOG0476|consen 682 PPRRSPSRSEFFTMQRENSDIVTALGETAKPLPPSEQRLPSVVENLTPRTISGTRENALLSLRDMESPLHGPAAEHHPLH 761 (931)
T ss_pred CCCCCccccccccccccccccccccccccCCCCchhccCccccccccccccCCccccccccccccccCCCCCcccccccc
Confidence 00000000 0000000 0000 000
Q ss_pred --------------cccc--cccchh--------hhhhccccccc-ccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeC
Q 003885 702 --------------KLED--LDIKEE--------EMEMFVDLHPI-TNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPK 756 (789)
Q Consensus 702 --------------~i~d--i~l~~~--------~~~~~~dL~~i-m~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~ 756 (789)
+-++ .+.+.+ .++..+|+.+. .++.|....+.+||.+++.+|.-+|++|..|.+
T Consensus 762 ~~~~r~~~~~~~~~~~~~~~~d~~~eei~~we~~~l~~~ld~~~~~IDpaPfQLve~TSL~K~HtLFSLLgL~~AYVT~- 840 (931)
T KOG0476|consen 762 KLLTRQTKVNNKKQSHDDNEYDLSAEEIKEWEEEQLSQKLDLDECAIDPAPFQLVEGTSLYKVHTLFSLLGLNHAYVTS- 840 (931)
T ss_pred cccccccccccccccccccccccChhhhhHHHHHHhccccchhhCCCCCCceeeeccchHHHHHHHHHHhccchhhhcc-
Confidence 0000 111222 23345666555 478899999999999999999999999999998
Q ss_pred CCCCCCEEEEEecccCcchhh
Q 003885 757 TPGRPPIVGILTRHDFMPEHV 777 (789)
Q Consensus 757 ~~~~~~vvGIITr~DLl~~~~ 777 (789)
.||++|+|+.++|.++.-
T Consensus 841 ---~GrLvGVValkELRkAie 858 (931)
T KOG0476|consen 841 ---CGRLVGVVALKELRKAIE 858 (931)
T ss_pred ---cCcEEEEEEHHHHHHHHH
Confidence 699999999999887543
No 4
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=100.00 E-value=5.8e-80 Score=699.95 Aligned_cols=460 Identities=57% Similarity=1.002 Sum_probs=409.5
Q ss_pred CCCCcccchhhhhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHH
Q 003885 73 ESLDYEIVENELFKQDWRARRKVEIFQYVVFKWTLALLIGVLTGLAAVFCNFFVENIAGFKLLLINNLMLNDRHFMGFVA 152 (789)
Q Consensus 73 esldy~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (789)
||+||++.||+.||+|||+|++++..+|.+.||++++++|+++|+++.+++..+++++++++....+...+..++.+|+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~ilvGi~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (466)
T cd03685 1 ESLDYEVIENDLFREEWRKRKKKQVLQYEFLKWIICLLIGIFTGLVAYFIDLAVENLAGLKFLVVKNYIEKGRLFTAFLV 80 (466)
T ss_pred CCCCccccccHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999988776554444556667888
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhCCCCCCccchhhHHHHHHhhhhhhhccccccCchhHHHHHHHHH
Q 003885 153 NTSINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIA 232 (789)
Q Consensus 153 ~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~~lng~~~~~~l~~~~l~~K~~~~i~sv~sG~svG~EGP~vhiGa~ig 232 (789)
|+.+++++++++++++.+++|.+.||||||||+++||.+.++.+++|+++.|++++++++++|+|+|||||++|+||++|
T Consensus 81 ~~~~~~~~~li~~~l~~~~~p~a~GsGip~v~~~l~g~~~~~~l~~r~~~~K~i~~~l~vgsG~s~GrEGP~v~iGa~ig 160 (466)
T cd03685 81 YLGLNLVLVLVAALLVAYIAPTAAGSGIPEVKGYLNGVKIPHILRLKTLLVKIVGVILSVSGGLALGKEGPMIHIGACIA 160 (466)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHcCcCccccchHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHH
Confidence 88889999999999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred HHhhccCccccchhhhhhcccCChhhhhhHHHhhhhhhhhhhccCcchhhhHHHhHhhhhhhhhhHHHHHHHHHHHHHHH
Q 003885 233 NLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVL 312 (789)
Q Consensus 233 s~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv~~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~ 312 (789)
++++|..++.+++.++++|+++++++||++++||+|||+||+|||||+|++|++||+.++|+.+..|+.++++++++++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~li~~GaAAGlaaaF~APl~G~lFa~E~l~~~~~~~~~~~~l~~s~ias~va 240 (466)
T cd03685 161 AGLSQGGSTSLRLDFRWFRYFRNDRDKRDFVTCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQALTWRTFFSSMIVTFTL 240 (466)
T ss_pred HHHhhccccccccchhhhhhccCHHHHHHHHHHHhhcchhhccCCCcceeeeeeehhhhhcchhHHHHHHHHHHHHHHHH
Confidence 99998766677777788998889999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHhhcCcccccCCCcceEEeccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhHHHHH
Q 003885 313 RGFIEFCRSGRCGLFGQGGLIMFDVNSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFKVLLV 392 (789)
Q Consensus 313 ~~l~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~~~~l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (789)
+.+..+...+....|+.+..+.|++......+++.|+++++++|++||++|.+|+++++++.+++++.+.+.+++|++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~l~~ 320 (466)
T cd03685 241 NFFLSGCNSGKCGLFGPGGLIMFDGSSTKYLYTYFELIPFMLIGVIGGLLGALFNHLNHKVTRFRKRINHKGKLLKVLEA 320 (466)
T ss_pred HHHHHHcCCCCccccCCccceecccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHH
Confidence 88766544333345655555556554334568899999999999999999999999999999988776543456678888
Q ss_pred HHHHHHhhhhhcccccccccCCCCCCcccCCCCCCCCCCCccccccCCCcchhhhhhhccCchHHHHhhhcCCCCccchH
Q 003885 393 AAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKEFHL 472 (789)
Q Consensus 393 ~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~ 472 (789)
++++++++++.+ .
T Consensus 321 ~lv~~~~~~~~~-------------------------------------------------------------------~ 333 (466)
T cd03685 321 LLVSLVTSVVAF-------------------------------------------------------------------P 333 (466)
T ss_pred HHHHHHHHHHHH-------------------------------------------------------------------H
Confidence 887777665321 1
Q ss_pred HHHHHHHHHHHHHHHHHhcCcCCcccchHHHHHHHHHHHHHHHHhhhc---cCcchHHHHHHHHHhhhhhhchhhHHHHh
Q 003885 473 STLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGAL---SDLDTGLFALLGAASFLGGTMRMTVSLCV 549 (789)
Q Consensus 473 ~~L~~~~~~k~~lt~~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~~---~~~~~~~~alvGaaA~l~g~~r~pis~~v 549 (789)
..+++++++|+++|++|+|+|+|||+|+|++++||++|+++|.+++.. ...+|+.||++||||+++|++|+|+|+++
T Consensus 334 ~~l~~~~~~k~l~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~~~~~~~~~~~aliGmaa~lag~~raPlt~iv 413 (466)
T cd03685 334 QTLLIFFVLYYFLACWTFGIAVPSGLFIPMILIGAAYGRLVGILLGSYFGFTSIDPGLYALLGAAAFLGGVMRMTVSLTV 413 (466)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHHccccCCCchHHHHHHHHHHHhHHhhhhHHHHH
Confidence 235566678999999999999999999999999999999999998753 46789999999999999999999999999
Q ss_pred HHHhhcCCCccHHHHHHHHHHHHHHHHhhCchhHHHHHHHcCCCcccccc
Q 003885 550 ILLELTNNLLMLPLVMLVLLISKTVADSFNQGVYDQIVKLKGLPYLEAHA 599 (789)
Q Consensus 550 i~~ElTg~~~~l~pimia~~ia~~v~~~~~~~iy~~~l~~kg~p~l~~~~ 599 (789)
|++|+||++++++|+|+++++|+++++.+++|+||.+++.||+|||++..
T Consensus 414 iv~ElTg~~~~l~pl~ia~~iA~~va~~~~~siY~~~l~~~g~p~l~~~~ 463 (466)
T cd03685 414 ILLELTNNLTYLPPIMLVLMIAKWVGDYFNEGIYDIIIQLKGVPFLHNGF 463 (466)
T ss_pred HhhhhcCChhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCC
Confidence 99999999999999999999999999999999999999999999998643
No 5
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=1.2e-75 Score=685.42 Aligned_cols=542 Identities=18% Similarity=0.247 Sum_probs=442.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHH-HHH
Q 003885 106 TLALLIGVLTGLAAVFCNFFVENIAGFKLLLINNLMLNDRHFMGFVANTSINLGLAILAAILCAYIAPAAAGSGIP-EVK 184 (789)
Q Consensus 106 ~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGip-ev~ 184 (789)
+.++++|+++|+++.+|+..+++++++++....++.... ...+|++.++++++++++++++..+..+.++++|++ .++
T Consensus 26 ~~~~~vG~~~Gl~~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~ggli~~~~~~~~~~~~~~~g~~~~~~ 104 (574)
T PRK01862 26 IWSAIVGIGGAFATTAFREGIELIQHLISGHSGSFVEMA-KSLPWYVRVWLPAAGGFLAGCVLLLANRGARKGGKTDYME 104 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHh-hcccHHHHHHHHHHHHHHHHHHHHHhccccccCCcHHHHH
Confidence 478999999999999999999999999876322111111 112344445566777777777777777766655555 466
Q ss_pred HHHhCCCCCCccchhhHHHHHHhhhhhhhccccccCchhHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhHHH
Q 003885 185 AYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLIT 264 (789)
Q Consensus 185 ~~lng~~~~~~l~~~~l~~K~~~~i~sv~sG~svG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv~ 264 (789)
++.++ .+.+++++.+.|++++++++++|+|+|||||++|+||++|+++++ |++. +++++|.+++
T Consensus 105 ~~~~~---~~~~~~~~~~~k~~~~~l~i~~G~s~G~EgP~v~~ga~~~~~~~~-----------~~~~--~~~~~r~l~~ 168 (574)
T PRK01862 105 AVALG---DGVVPVRQSLWRSASSLLTIGSGGSIGREGPMVQLAALAASLVGR-----------FAHF--DPPRLRLLVA 168 (574)
T ss_pred HHHcC---CCCCChHHHHHHHHHHHHHHHcCCCcCCcchHHHHHHHHHHHHHH-----------HhCC--CHHHHHHHHH
Confidence 66665 456789999999999999999999999999999999999999987 4443 5678899999
Q ss_pred hhhhhhhhhhccCcchhhhHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCcceEEeccCCCCCc
Q 003885 265 CGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFIEFCRSGRCGLFGQGGLIMFDVNSAKNSY 344 (789)
Q Consensus 265 ~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~l~~~~~~~~~~~f~~~~~~~f~~~~~~~~~ 344 (789)
||+|||+||+||||++|++|++|++...|+.+.++++++++.+++++.+.+ +++.+ .|+++. ...+
T Consensus 169 ~G~aAglaa~F~aPl~g~lFa~E~~~~~~~~~~~~~~~~as~~a~~v~~~~-----------~g~~~--~~~~~~-~~~~ 234 (574)
T PRK01862 169 CGAAAGITSAYNAPIAGAFFVAEIVLGSIAMESFGPLVVASVVANIVMREF-----------AGYQP--PYEMPV-FPAV 234 (574)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH-----------cCCCc--eeeCCC-cCcC
Confidence 999999999999999999999999998899999999999999888887754 23333 456653 4568
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhhhhhcccccccccCCCCCCcccCCC
Q 003885 345 SSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFKVLLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRC 424 (789)
Q Consensus 345 ~~~~l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~ 424 (789)
+..++++++++|++||++|.+|+++++++.+++++.+ .++++...+++++++++.++.|..
T Consensus 235 ~~~~~~~~~~lGv~~G~~~~~f~~~~~~~~~~~~~~~----~~~~~~~~~~gl~~g~l~~~~p~~--------------- 295 (574)
T PRK01862 235 TGWEVLLFVALGVLCGAAAPQFLRLLDASKNQFKRLP----VPLPVRLALGGLLVGVISVWVPEV--------------- 295 (574)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----CchhHHHHHHHHHHHHHHHHHHHH---------------
Confidence 8899999999999999999999999999888776543 223445566777888888777765
Q ss_pred CCCCCCCCccccccCCCcchhhhhhhccCchHHHHhhhcCCCCccchHHHHHHHHHHHHHHHHHHhcCcCCcccchHHHH
Q 003885 425 PTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVIL 504 (789)
Q Consensus 425 p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~L~~~~~~k~~lt~~t~g~g~~gG~f~P~l~ 504 (789)
.| ++++.++.++++ .+.+..+++++++|+++|++|+|+|+|||+|+|+++
T Consensus 296 --~g------------------------~G~~~i~~~~~~----~~~~~~l~~~~~~K~~~t~~t~g~G~~GG~f~P~l~ 345 (574)
T PRK01862 296 --WG------------------------NGYSVVNTILHA----PWTWQALVAVLVAKLIATAATAGSGAVGGVFTPTLF 345 (574)
T ss_pred --hc------------------------CCHHHHHHHHcC----CchHHHHHHHHHHHHHHHHHHHccCCCccchhhHHH
Confidence 12 112334444432 345667777888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcc---CcchHHHHHHHHHhhhhhhchhhHHHHhHHHhhcCCCccHHHHHHHHHHHHHHHHhh-Cc
Q 003885 505 AGASYGRLVGNLLGALS---DLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKTVADSF-NQ 580 (789)
Q Consensus 505 iGa~~G~l~g~~~~~~~---~~~~~~~alvGaaA~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~-~~ 580 (789)
+||++|+++|++++... ..+|+.|+++||||+++|++|+|++++++++|+|+++++++|+|+++++|+++++.+ .+
T Consensus 346 iGa~~G~~~g~~~~~~~~~~~~~~~~~a~vGmaa~~aa~~~aPlt~i~l~~Elt~~~~~~~P~~ia~~~a~~v~~~~~~~ 425 (574)
T PRK01862 346 VGAVVGSLFGLAMHALWPGHTSAPFAYAMVGMGAFLAGATQAPLMAILMIFEMTLSYQVVLPLMVSCVVAYFTARALGTT 425 (574)
T ss_pred HHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999887532 235788999999999999999999999999999999999999999999999999988 78
Q ss_pred hhHHHHHHHcCCCcccccccccccccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEeh
Q 003885 581 GVYDQIVKLKGLPYLEAHAEPYMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLR 660 (789)
Q Consensus 581 ~iy~~~l~~kg~p~l~~~~~~~l~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r 660 (789)
++|+.+++.++. +.+.+.+++++++|+|+++..+++++++++++.+.+++++++.+||+|++ ++++|+|++
T Consensus 426 ~iy~~~~~~~~~----~~~~~~L~~~~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~-----g~lvGiVt~ 496 (574)
T PRK01862 426 SMYEITLRRHQD----EAERERLRTTQMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDD-----GRFRGAVAL 496 (574)
T ss_pred ChHHHHHHhccc----cchhhHHhhCcHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCC-----CeEEEEEEH
Confidence 999999998864 23556789999999999999999999999999999999999999999987 899999999
Q ss_pred HHHHHHHhcCccccccccCCcccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHH
Q 003885 661 SHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAA 740 (789)
Q Consensus 661 ~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~ 740 (789)
+|+.+.+.+..- +...++.++|++++.++++|+++.+++
T Consensus 497 ~dL~~~l~~~~~-----------------------------------------~~~~~v~dim~~~~~~v~~d~~L~~al 535 (574)
T PRK01862 497 KDITSDLLDKRD-----------------------------------------TTDKTAADYAHTPFPLLTPDMPLGDAL 535 (574)
T ss_pred HHHHHHhhcccc-----------------------------------------cccchHHHhccCCCeeECCCCCHHHHH
Confidence 999765432100 001235668888999999999999999
Q ss_pred HHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcchhhh
Q 003885 741 VLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHVL 778 (789)
Q Consensus 741 ~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~~~~ 778 (789)
++|.+.+.+++||+|+ +++++++|+||++|+++.+.+
T Consensus 536 ~~m~~~~~~~lpVVd~-~~~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 536 EHFMAFQGERLPVVES-EASPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred HHHHhcCCCeeeeEeC-CCCCeEEEEEEHHHHHHHHHh
Confidence 9999999999999987 122589999999999987654
No 6
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=100.00 E-value=7.3e-70 Score=614.58 Aligned_cols=423 Identities=36% Similarity=0.628 Sum_probs=351.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhCCC
Q 003885 112 GVLTGLAAVFCNFFVENIAGFKLLLINNLMLNDRHFMGFVANTSINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGID 191 (789)
Q Consensus 112 Gv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~~lng~~ 191 (789)
|+++|+++..++..++++.+++.... +|++|+++++++++++++++.+++|.++||||||||+++||.+
T Consensus 1 g~~~g~~~~~i~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~i~~~l~~~~~p~a~GsGIp~v~~~l~g~~ 69 (445)
T cd03684 1 GIAIGLIAGLIDIIASWLSDLKEGYC-----------NYIIYVLLALLFAFIAVLLVKVVAPYAAGSGIPEIKTILSGFI 69 (445)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHHHHHHHHHhcCccccCCCHHHHHHHHcCcc
Confidence 78999999999999999988875432 5677888899999999999999999999999999999999988
Q ss_pred CCCccchhhHHHHHHhhhhhhhccccccCchhHHHHHHHHHHHhhccCccccchhhhhhccc-CChhhhhhHHHhhhhhh
Q 003885 192 AHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYF-KNDRDRRDLITCGAAAG 270 (789)
Q Consensus 192 ~~~~l~~~~l~~K~~~~i~sv~sG~svG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f-~~~~~~r~lv~~GaAAG 270 (789)
.++.+++|+++.|++++++++++|+|+|||||++|+||++|++++| |++.+ .|+++||++++||+|||
T Consensus 70 ~~~~~~~~~~~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ia~~l~~-----------~~~~~~~~~~~~r~li~~GaaAG 138 (445)
T cd03684 70 IRGFLGKWTLLIKSVGLVLAVASGLSLGKEGPLVHIATCVGNIISR-----------LFPKYRRNEAKRREILSAAAAAG 138 (445)
T ss_pred ccccccHHHHHHHHHhhHHhhccCCcCCCCCCcchHHHHHHHHHHH-----------HHHHhccCHHHHHHHHHHHHhhh
Confidence 8999999999999999999999999999999999999999999986 44433 37899999999999999
Q ss_pred hhhhccCcchhhhHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCcceEEeccCCCCCcchhhHH
Q 003885 271 VAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFIEFCRSGRCGLFGQGGLIMFDVNSAKNSYSSADLL 350 (789)
Q Consensus 271 vaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~l~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~~~~l~ 350 (789)
+||+|||||||++|++||+.++|+.+.+|++++++++++++.+.+. .++.+....|+++. ...++..|++
T Consensus 139 laAaF~APi~G~lFalE~l~~~~~~~~l~~~~~as~~a~~v~~~~~---------~~~~~~~~~f~~~~-~~~~~~~~l~ 208 (445)
T cd03684 139 VAVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALVAAFTLKSLN---------PFGTGRLVLFEVEY-DRDWHYFELI 208 (445)
T ss_pred hHHhcCCccchhhhhhHhhhhhccHHHHHHHHHHHHHHHHHHHHhc---------ccCCCCceEEeccC-CCCccHHHHH
Confidence 9999999999999999999999999999999999999999887652 23444445566543 4567889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhhhhhcccccccccCCCCCCcccCCCCCCCCC
Q 003885 351 AVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFKVLLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRS 430 (789)
Q Consensus 351 ~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~p~~g~~ 430 (789)
+++++|+++|++|.+|+++++++.+++++.+. +.++++++++++++++++.++.|+... .|.
T Consensus 209 ~~i~lGi~~Gl~g~lf~~~~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~~l~~~~p~~~~---------------~g~- 270 (445)
T cd03684 209 PFILLGIFGGLYGAFFIKANIKWARFRKKSLL--KRYPVLEVLLVALITALISFPNPYTRL---------------DMT- 270 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHhChHHHcc---------------chh-
Confidence 99999999999999999999999998876541 235678888999999999998887621 000
Q ss_pred CCccc--cccCCCcchhhhhhhccCchHHHHhhhcCCCCcc-chHHHHHHHHHHHHHHHHHHhcCcCCcccchHHHHHHH
Q 003885 431 GNYKN--FQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKE-FHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGA 507 (789)
Q Consensus 431 g~~~~--~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~-~~~~~L~~~~~~k~~lt~~t~g~g~~gG~f~P~l~iGa 507 (789)
....+ -.|.+...++..... .....+.. ..+..+++++++|+++|++|+|+|+|||+|+|++++||
T Consensus 271 ~~i~~l~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~l~K~~~t~lt~gsG~~GG~f~P~l~iGA 339 (445)
T cd03684 271 ELLELLFNECEPGDDNSLCCYR-----------DPPAGDGVYKALWSLLLALIIKLLLTIFTFGIKVPAGIFVPSMAVGA 339 (445)
T ss_pred hHHHHHHhcCCCcccccccccc-----------cccCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcceeHHHHHHHH
Confidence 00000 001000000000000 00000111 23456777889999999999999999999999999999
Q ss_pred HHHHHHHHHhhhc-----------------cCcchHHHHHHHHHhhhhhhchhhHHHHhHHHhhcCCCccHHHHHHHHHH
Q 003885 508 SYGRLVGNLLGAL-----------------SDLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLI 570 (789)
Q Consensus 508 ~~G~l~g~~~~~~-----------------~~~~~~~~alvGaaA~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~i 570 (789)
++|+++|.+++.. ...+|+.||++||||++++++|+|+|+++|++|+||++++++|+|+++++
T Consensus 340 ~~G~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~alvGmaa~~a~~~raPlt~ivlv~ElTg~~~~l~pl~ia~~i 419 (445)
T cd03684 340 LFGRIVGILVEQLAYSYPDSIFFACCTAGPSCITPGLYAMVGAAAFLGGVTRMTVSLVVIMFELTGALNYILPLMIAVMV 419 (445)
T ss_pred HHhHHHHHHHHHHHhhCCcccccccccCCCCccCchHHHHHHHHHHhcchhccchhhhheeeeccCCcccHHHHHHHHHH
Confidence 9999999998642 23688999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh-CchhHHHHHHHcCCCcc
Q 003885 571 SKTVADSF-NQGVYDQIVKLKGLPYL 595 (789)
Q Consensus 571 a~~v~~~~-~~~iy~~~l~~kg~p~l 595 (789)
|+++++.+ .+++||.+++.||+|||
T Consensus 420 A~~vs~~~~~~siY~~~l~~~g~p~l 445 (445)
T cd03684 420 SKWVADAIGKEGIYDAHIHLNGYPFL 445 (445)
T ss_pred HHHHHHHhCCCCHHHHHHHhcCCCCC
Confidence 99999999 58999999999999996
No 7
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=100.00 E-value=1.6e-67 Score=592.96 Aligned_cols=411 Identities=31% Similarity=0.582 Sum_probs=345.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHH
Q 003885 105 WTLALLIGVLTGLAAVFCNFFVENIAGFKLLLINNLMLNDRHFMGFVANTSINLGLAILAAILCAYIAPAAAGSGIPEVK 184 (789)
Q Consensus 105 w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~ 184 (789)
|++.+++|+++|+++.+++..++++.+++....... ++..+..|+.|+.+++++++++++++.+++|.++||||||||
T Consensus 2 w~~~~l~gv~~Gl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~ 79 (426)
T cd03683 2 WLFLALLGILMALISIAMDFAVEKLLNARRWLYSLL--TGNSLLQYLVWVAYPVALVLFSALFCKYISPQAVGSGIPEMK 79 (426)
T ss_pred eEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHH
Confidence 889999999999999999999999998887654321 233456678888889999999999999999999999999999
Q ss_pred HHHhCCCCCCccchhhHHHHHHhhhhhhhccccccCchhHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhHHH
Q 003885 185 AYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLIT 264 (789)
Q Consensus 185 ~~lng~~~~~~l~~~~l~~K~~~~i~sv~sG~svG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv~ 264 (789)
++++|.+.++.+++|+++.|++++++++++|+|+|||||+||+||++|+.++|.. +.+ . ..++|+++||++++
T Consensus 80 ~~l~g~~~~~~l~~r~~~~k~i~~~l~i~sG~svGrEGP~v~iGa~i~~~~~~~~----~~~--~-~~~~~~~~rr~Li~ 152 (426)
T cd03683 80 TILRGVVLPEYLTFKTLVAKVIGLTCALGSGLPLGKEGPFVHISSIVAALLSKLT----TFF--S-GIYENESRRMEMLA 152 (426)
T ss_pred HHHcCCCccccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhc----ccc--c-ccccCHHHHHHHHH
Confidence 9999998899999999999999999999999999999999999999999998722 110 0 01357889999999
Q ss_pred hhhhhhhhhhccCcchhhhHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCcceEEecc-CCCCC
Q 003885 265 CGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFIEFCRSGRCGLFGQGGLIMFDVN-SAKNS 343 (789)
Q Consensus 265 ~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~l~~~~~~~~~~~f~~~~~~~f~~~-~~~~~ 343 (789)
||+|||+||+||||+||++|++||+.++|+.+.+|+++++|++++++.+.+.++..... ..+ . .|... .....
T Consensus 153 ~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~i~s~~a~~v~~~~~~~~~~~~-~~~---~--~~~~~~~~~~~ 226 (426)
T cd03683 153 AACAVGVACTFGAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCGAFTFRLLAVFFSDQE-TIT---A--LFKTTFFVDFP 226 (426)
T ss_pred hHhhhhhHHhcCCcceeeEEEeehhhhhccHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-ccc---c--cccccccCCCC
Confidence 99999999999999999999999999999999999999999999998876644321110 000 0 12111 12346
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---cCchhHHHHHHHHHHHhhhhhcccccccccCCCCCCcc
Q 003885 344 YSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINE---RGPIFKVLLVAAVSLLTSCCSYGLPWLSHCIPCPSYLE 420 (789)
Q Consensus 344 ~~~~~l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~ 420 (789)
++..++++++++|+++|++|++|++++.++.+++++.+. ..+..+++++++++++++++.+ |
T Consensus 227 ~~~~~l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~--p------------- 291 (426)
T cd03683 227 FDVQELPIFALLGIICGLLGALFVFLHRKIVRFRRKNRLFSKFLKRSPLLYPAIVALLTAVLTF--P------------- 291 (426)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHH--H-------------
Confidence 788999999999999999999999999999888765432 1234567788888877765321 1
Q ss_pred cCCCCCCCCCCCccccccCCCcchhhhhhhccCchHHHHhhhcCCCCccchHHHHHHHHHHHHHHHHHHhcCcCCcccch
Q 003885 421 ADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFI 500 (789)
Q Consensus 421 ~~~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~L~~~~~~k~~lt~~t~g~g~~gG~f~ 500 (789)
+..++++++.|+++|++|+|+|+|||+|+
T Consensus 292 ---------------------------------------------------~~~l~~~~~~K~~~t~~t~gsG~~GGif~ 320 (426)
T cd03683 292 ---------------------------------------------------FLTLFLFIVVKFVLTALAITLPVPAGIFM 320 (426)
T ss_pred ---------------------------------------------------HHHHHHHHHHHHHHHHHHHhCCCChhhhH
Confidence 23466677899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcc----------CcchHHHHHHHHHhhhhhhchhhHHHHhHHHhhcCCCccHHHHHHHHHH
Q 003885 501 PVILAGASYGRLVGNLLGALS----------DLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLI 570 (789)
Q Consensus 501 P~l~iGa~~G~l~g~~~~~~~----------~~~~~~~alvGaaA~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~i 570 (789)
|++++||++|+++|.++.... ..+|+.||++||||+++|++|+|.+ ++|++|+||++++++|+|+++++
T Consensus 321 Psl~iGa~~G~~~g~~~~~~~p~~~~~~~~~~~~~~~~alvGmaa~~a~~~ra~~t-~vlv~E~Tg~~~~llpl~ia~~i 399 (426)
T cd03683 321 PVFVIGAALGRLVGEIMAVLFPEGIRGGISNPIGPGGYAVVGAAAFSGAVTHTVSV-AVIIFELTGQISHLLPVLIAVLI 399 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcccccCCCCCcCchHHHHHHHHHHHHHHHhHHHH-HheeeeecCCcchHHHHHHHHHH
Confidence 999999999999999887532 3679999999999999999998665 47999999999999999999999
Q ss_pred HHHHHHhhCchhHHHHHHHcCCCcccc
Q 003885 571 SKTVADSFNQGVYDQIVKLKGLPYLEA 597 (789)
Q Consensus 571 a~~v~~~~~~~iy~~~l~~kg~p~l~~ 597 (789)
|+++++.+++|+||.+++.||+||||+
T Consensus 400 a~~v~~~~~~~iY~~~l~~~~~p~l~~ 426 (426)
T cd03683 400 SNAVAQFLQPSIYDSIIKIKKLPYLPD 426 (426)
T ss_pred HHHHHHhhCCCHHHHHHHhCCCCCCCC
Confidence 999999998899999999999999873
No 8
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=100.00 E-value=3.6e-67 Score=588.93 Aligned_cols=403 Identities=37% Similarity=0.619 Sum_probs=344.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhCCC
Q 003885 112 GVLTGLAAVFCNFFVENIAGFKLLLINNLMLNDRHFMGFVANTSINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGID 191 (789)
Q Consensus 112 Gv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~~lng~~ 191 (789)
|+++|+++.+++..+++..+++.+.+.+. ++.+...|+.|+.+++++++++++++.+++|.++||||||||+++||.+
T Consensus 1 ~~~~Glv~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~~l~g~~ 78 (416)
T cd01036 1 GLLMGLVAVVLDYAVESSLDAGQWLLRRI--PGSYLLGYLMWVLWSVVLVLISSGICLYFAPQAAGSGIPEVMAYLNGVH 78 (416)
T ss_pred CeeehHHHHHHHHHHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHcCCc
Confidence 67899999999999999999998877543 3445667788888999999999999999999999999999999999999
Q ss_pred CCCccchhhHHHHHHhhhhhhhccccccCchhHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhHHHhhhhhhh
Q 003885 192 AHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGAAAGV 271 (789)
Q Consensus 192 ~~~~l~~~~l~~K~~~~i~sv~sG~svG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv~~GaAAGv 271 (789)
.|+++++|+++.|++++++++++|+|+|||||++|+||++|++++|..+..++...+++++++|+++||++++||+|||+
T Consensus 79 ~~~~l~~~~~~~K~i~~~l~igsG~svGrEGP~V~iGa~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~r~ll~aGaaAGl 158 (416)
T cd01036 79 LPMYLSIRTLIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQGRSRTLGCHVHLFQLFRNPRDRRDFLVAGAAAGV 158 (416)
T ss_pred ccccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccchhhhccCHHHHHHHHHHHhhcch
Confidence 99999999999999999999999999999999999999999999986544433344566777899999999999999999
Q ss_pred hhhccCcchhhhHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCC-cceEEeccCCCCCcchhhHH
Q 003885 272 AGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFIEFCRSGRCGLFGQG-GLIMFDVNSAKNSYSSADLL 350 (789)
Q Consensus 272 aaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~l~~~~~~~~~~~f~~~-~~~~f~~~~~~~~~~~~~l~ 350 (789)
||+|||||+|++|++||+.++|+.+.+|++++++++++++.+.+.++........+.++ ....+.++ ...+++..|++
T Consensus 159 aAaF~APiaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ 237 (416)
T cd01036 159 ASAFGAPIGGLLFVLEEVSTFFPVRLAWRVFFAALVSAFVIQIYNSFNSGFELLDRSSAMFLSLTVFE-LHVPLNLYEFI 237 (416)
T ss_pred hhccCCcceeeeeeeHHhhccccHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccceeccccC-CCCCCCHHHHH
Confidence 99999999999999999999999999999999999999998876543211100000000 00122233 24567889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCchhHHHHHHHHHHHhhhhhcccccccccCCCCCCcccCCCCCCCC
Q 003885 351 AVIFLGVIGGIFGSFYNYLVDKVLRTYSIINE-RGPIFKVLLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGR 429 (789)
Q Consensus 351 ~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~p~~g~ 429 (789)
+++++|++||++|.+|+++++++.+++++... +.++.+++++++++++++++.+
T Consensus 238 ~~illGv~~G~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------------------------- 292 (416)
T cd01036 238 PTVVIGVICGLLAALFVRLSIIFLRWRRRLLFRKTARYRVLEPVLFTLIYSTIHY------------------------- 292 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHH-------------------------
Confidence 99999999999999999999999998876532 2456688889888888776432
Q ss_pred CCCccccccCCCcchhhhhhhccCchHHHHhhhcCCCCccchHHHHHHHHHHHHHHHHHHhcCcCCcccchHHHHHHHHH
Q 003885 430 SGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASY 509 (789)
Q Consensus 430 ~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~L~~~~~~k~~lt~~t~g~g~~gG~f~P~l~iGa~~ 509 (789)
+..++++++.|+++|++|+|+|+|||+|+|++++||++
T Consensus 293 ------------------------------------------~~~l~~~~~~K~~~t~~t~~sg~pGG~f~Psl~iGA~~ 330 (416)
T cd01036 293 ------------------------------------------APTLLLFLLIYFWMSALAFGIAVPGGTFIPSLVIGAAI 330 (416)
T ss_pred ------------------------------------------HHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHH
Confidence 13456677899999999999999999999999999999
Q ss_pred HHHHHHHhhhcc-----------CcchHHHHHHHHHhhhhhhchhhHHHHhHHHhhcCCCccHHHHHHHHHHHHHHHHhh
Q 003885 510 GRLVGNLLGALS-----------DLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKTVADSF 578 (789)
Q Consensus 510 G~l~g~~~~~~~-----------~~~~~~~alvGaaA~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~ 578 (789)
|+++|.+++... ..+|+.||++||||+++|++|+|+|+++|++|+||++++++|+|+++++|+++++.+
T Consensus 331 G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~alvGmaa~l~~~~r~Plt~~vi~~ElTg~~~~l~pl~ia~~ia~~v~~~~ 410 (416)
T cd01036 331 GRLVGLLVHRIAVAGIGAESATLWADPGVYALIGAAAFLGGTTRLTFSICVIMMELTGDLHHLLPLMVAILIAKAVADAF 410 (416)
T ss_pred HHHHHHHHHHHccccccccccCCccChHHHHHHHHHHHhhhhhcchHhhhhheeeccCChhhHHHHHHHHHHHHHHHHhh
Confidence 999999987532 378999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHH
Q 003885 579 NQGVYD 584 (789)
Q Consensus 579 ~~~iy~ 584 (789)
++|+||
T Consensus 411 ~~siY~ 416 (416)
T cd01036 411 CESLYH 416 (416)
T ss_pred CCCCCC
Confidence 999996
No 9
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=100.00 E-value=3.3e-59 Score=524.05 Aligned_cols=398 Identities=30% Similarity=0.505 Sum_probs=336.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhCC
Q 003885 111 IGVLTGLAAVFCNFFVENIAGFKLLLINNLMLNDRHFMGFVANTSINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGI 190 (789)
Q Consensus 111 iGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~~lng~ 190 (789)
+|+++|+++.+|+..+++++++++....... +....|+.+++++.++++++++++.++.|+++|+|+||++++++|.
T Consensus 1 iGi~~G~~~~~f~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~l~~~~~p~~~g~G~~~v~~~l~~~ 77 (402)
T cd01031 1 IGLLAGLVAVLFRLGIDKLGNLRLSLYDFAA---NNPPLLLVLPLISAVLGLLAGWLVKKFAPEAKGSGIPQVEGVLAGL 77 (402)
T ss_pred CeehHhHHHHHHHHHHHHHHHHHHHHHHhcc---cccHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHHcCC
Confidence 5899999999999999999999887643221 2223445566677788888888988899999999999999999985
Q ss_pred CCCCccchhhHHHHHHhhhhhhhccccccCchhHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhHHHhhhhhh
Q 003885 191 DAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGAAAG 270 (789)
Q Consensus 191 ~~~~~l~~~~l~~K~~~~i~sv~sG~svG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv~~GaAAG 270 (789)
. +.+++++++.|++++++++++|+|+|||||++|+|+++|+++++ +++. +++++|++++||+|||
T Consensus 78 ~--~~~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga~ig~~~~~-----------~~~~--~~~~~~~l~~~g~aag 142 (402)
T cd01031 78 L--PPNWWRVLPVKFVGGVLALGSGLSLGREGPSVQIGAAIGQGVSK-----------WFKT--SPEERRQLIAAGAAAG 142 (402)
T ss_pred C--CcccHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHH-----------HhcC--CHHHHHHHHHHHHHHh
Confidence 3 35678999999999999999999999999999999999999987 3343 5778999999999999
Q ss_pred hhhhccCcchhhhHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCcceEEeccCCCCCcchhhHH
Q 003885 271 VAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFIEFCRSGRCGLFGQGGLIMFDVNSAKNSYSSADLL 350 (789)
Q Consensus 271 vaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~l~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~~~~l~ 350 (789)
++|+||||++|++|++|++.++|+.+.+++.++++.+++++.+.+ +++.+ .|.++. ...++..|++
T Consensus 143 ~aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~a~~~a~~v~~~~-----------~~~~~--~~~~~~-~~~~~~~~l~ 208 (402)
T cd01031 143 LAAAFNAPLAGVLFVLEELRHSFSPLALLTALVASIAADFVSRLF-----------FGLGP--VLSIPP-LPALPLKSYW 208 (402)
T ss_pred HHHHhCCccHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH-----------cCCCc--eEecCC-CCCCCHHHHH
Confidence 999999999999999999999998889999999999998887753 23333 355553 4568899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhhhhhcccccccccCCCCCCcccCCCCCCCCC
Q 003885 351 AVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFKVLLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRS 430 (789)
Q Consensus 351 ~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~p~~g~~ 430 (789)
+++++|+++|++|.+|+++++++.+++++.+++ .+.+.+.+.+++++++.++.|+. .|
T Consensus 209 ~~illGv~~G~~g~~f~~~~~~~~~~~~~~~~~---~~~~~~~l~gl~~~~~~~~~p~~-----------------~g-- 266 (402)
T cd01031 209 LLLLLGIIAGLLGYLFNRSLLKSQDLYRKLKKL---PRELRVLLPGLLIGPLGLLLPEA-----------------LG-- 266 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC---ChhHHHHHHHHHHHHHHHHHHHH-----------------hC--
Confidence 999999999999999999999998888765322 24445567777888888777765 11
Q ss_pred CCccccccCCCcchhhhhhhccCchHHHHhhhcCCCCccchHHHHHHHHHHHHHHHHHHhcCcCCcccchHHHHHHHHHH
Q 003885 431 GNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYG 510 (789)
Q Consensus 431 g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~L~~~~~~k~~lt~~t~g~g~~gG~f~P~l~iGa~~G 510 (789)
++++.++.+++ +++++..++++++.|++++++|+|+|+|||+|+|++++||++|
T Consensus 267 ----------------------~G~~~i~~~~~----~~~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G 320 (402)
T cd01031 267 ----------------------GGHGLILSLAG----GNFSISLLLLIFVLRFIFTMLSYGSGAPGGIFAPMLALGALLG 320 (402)
T ss_pred ----------------------CHHHHHHHHHc----CCchHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 12334455543 2456777888889999999999999999999999999999999
Q ss_pred HHHHHHhhhc---cCcchHHHHHHHHHhhhhhhchhhHHHHhHHHhhcCCCccHHHHHHHHHHHHHHHHhh-CchhHHHH
Q 003885 511 RLVGNLLGAL---SDLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKTVADSF-NQGVYDQI 586 (789)
Q Consensus 511 ~l~g~~~~~~---~~~~~~~~alvGaaA~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~-~~~iy~~~ 586 (789)
+++|++++.. ...+|+.||++||+|++++++|+|++++++++|+||++++++|+|+++++|+++++.+ ++++||.+
T Consensus 321 ~~~g~~~~~~~~~~~~~~~~~a~~G~aa~~a~~~~aPlta~vl~~Eltg~~~~l~p~~ia~~ia~~v~~~~~~~siY~~~ 400 (402)
T cd01031 321 LLFGTILVQLGPIPISAPATFAIAGMAAFFAAVVRAPITAIILVTEMTGNFNLLLPLMVVCLVAYLVADLLGGKPIYEAL 400 (402)
T ss_pred HHHHHHHHHhcCcccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCChhHHH
Confidence 9999998753 2578999999999999999999999999999999999999999999999999999999 99999998
Q ss_pred HH
Q 003885 587 VK 588 (789)
Q Consensus 587 l~ 588 (789)
++
T Consensus 401 l~ 402 (402)
T cd01031 401 LE 402 (402)
T ss_pred hC
Confidence 64
No 10
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=8.7e-59 Score=519.99 Aligned_cols=408 Identities=20% Similarity=0.280 Sum_probs=327.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhccC--CCCCC
Q 003885 103 FKWTLALLIGVLTGLAAVFCNFFVENIAGFKLLLIN-NLMLNDRHFMGFVANTSINLGLAILAAILCAYIAPA--AAGSG 179 (789)
Q Consensus 103 ~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~--a~GsG 179 (789)
++|++++++|+++|+++.+|...+++++++.++... ++.+..+-..+| +..+++++.+++++++..++.|. .+++|
T Consensus 3 ~~~~~a~~iG~~~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~p~~ggll~g~~~~~~~~~~~~~~~g 81 (418)
T PRK01610 3 RRLLIATVVGILAALAVAGFRHAMLLLEWLFLSNDSGSLVNAATNLSPW-RRLLTPALGGLAAGLLLWGWQKFTQQRPHA 81 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchhhcccccchH-HHHHHHHHHHHHHHHHHHHHcccccccCCC
Confidence 345689999999999999999999998775543211 111111112233 34566777888888888777764 77899
Q ss_pred HHHHHHHHhCCCCCCccchhhHHHHHHhhhhhhhccccccCchhHHHHHHHHHHHhhccCccccchhhhhhcccCChhhh
Q 003885 180 IPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDR 259 (789)
Q Consensus 180 ipev~~~lng~~~~~~l~~~~l~~K~~~~i~sv~sG~svG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~ 259 (789)
++++++.++. ++.+++|+.+.|++++++++++|+|+|||||++|+|+++|++++| +++ +++||
T Consensus 82 ~~~vi~av~~---~g~~~~~~~~~k~~~~~l~igsG~S~GrEGP~v~iGa~~g~~~~~-----------~~~---~~~~~ 144 (418)
T PRK01610 82 PTDYMEALQT---DGQFDYAASLVKSLASLLVVTSGSAIGREGAMILLAALAASCFAQ-----------RFT---PRQEW 144 (418)
T ss_pred cHHHHHHHHc---CCCCCccHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH-----------HhC---ChHHH
Confidence 9999887775 467899999999999999999999999999999999999999997 443 57889
Q ss_pred hhHHHhhhhhhhhhhccCcchhhhHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCcceEEeccC
Q 003885 260 RDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFIEFCRSGRCGLFGQGGLIMFDVNS 339 (789)
Q Consensus 260 r~lv~~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~l~~~~~~~~~~~f~~~~~~~f~~~~ 339 (789)
|++++||+|||+||+||||++|++|++|++.+.++.+.+.++++++.+++++.+.+ ++... ..|+++.
T Consensus 145 r~li~~GaaAGlaa~F~aPlaG~lFa~E~l~~~~~~~~~~p~~ias~~a~~v~~~~-----------~g~~~-~~~~i~~ 212 (418)
T PRK01610 145 KLWIACGAAAGMASAYHAPLAGSLFIAEILFGTLMLASLGPVVISAVVALLTTNLL-----------NGSDA-LLYNVQL 212 (418)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-----------cCCCC-CeeecCC
Confidence 99999999999999999999999999999988887777777777777777666543 22211 2466663
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhhhhhcccccccccCCCCCCc
Q 003885 340 AKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFKVLLVAAVSLLTSCCSYGLPWLSHCIPCPSYL 419 (789)
Q Consensus 340 ~~~~~~~~~l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~ 419 (789)
...++..++++++++|+++|++|.+|+++.++..+++++.+. .+++.+.+.+++++++.++.|..
T Consensus 213 -~~~~~~~~l~~~i~lGii~Gl~g~~f~~~~~~~~~~~~~~~~----~~~~~~~lggli~g~l~~~~p~~---------- 277 (418)
T PRK01610 213 -SVTVQARDYALIISTGLLAGLCGPLLLTLMNASHRGFVSLKL----APPWQLALGGLIVGLLSLFTPAV---------- 277 (418)
T ss_pred -cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc----chhHHHHHHHHHHHHHHHHhhHH----------
Confidence 456788999999999999999999999999998887765432 23355677788888888877765
Q ss_pred ccCCCCCCCCCCCccccccCCCcchhhhhhhccCchHHHHhhhcCCCCccchHHHHHHHHHHHHHHHHHHhcCcCCcccc
Q 003885 420 EADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLF 499 (789)
Q Consensus 420 ~~~~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~L~~~~~~k~~lt~~t~g~g~~gG~f 499 (789)
.|. .|+ .++.+++. +..+..++++++.|+++|++|+|+|.+||+|
T Consensus 278 -------~G~------------G~~------------~i~~~~~~----~~~~~~l~~l~l~K~~~t~lt~gsG~~GG~f 322 (418)
T PRK01610 278 -------WGN------------GYS------------VVQSFLTA----PPLLMLIAGIFLCKLLAVLASSGSGAPGGVF 322 (418)
T ss_pred -------hCC------------cHH------------HHHHHHcC----ChhHHHHHHHHHHHHHHHHHHHhcCCCchhh
Confidence 121 132 23333332 3344556667789999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhc---cCcchHHHHHHHHHhhhhhhchhhHHHHhHHHhhcCCCccHHHHHHHHHHHHHHHH
Q 003885 500 IPVILAGASYGRLVGNLLGAL---SDLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKTVAD 576 (789)
Q Consensus 500 ~P~l~iGa~~G~l~g~~~~~~---~~~~~~~~alvGaaA~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~ia~~v~~ 576 (789)
.|++++||++|.++|++++.. ...++..||++||+|++++++|+|++++++++|+||++++++|+|+++++|+++++
T Consensus 323 ~P~l~iGa~~G~~~g~~~~~~~~~~~~~~~~~a~vGmaA~laa~~~aPltaivl~~Eltg~~~~~~p~~ia~~ia~~vs~ 402 (418)
T PRK01610 323 TPTLFVGLAIGMLYGRSLGLWLPDGEEITLLLGLTGMATLLAATTHAPIMSTLMICEMTGEYQLLPGLLIACVIASVISR 402 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHH
Confidence 999999999999999998752 12347899999999999999999999999999999999999999999999999999
Q ss_pred hh-CchhHHHHHHHc
Q 003885 577 SF-NQGVYDQIVKLK 590 (789)
Q Consensus 577 ~~-~~~iy~~~l~~k 590 (789)
.+ ++++|+.++..|
T Consensus 403 ~~~~~siy~~~~~~~ 417 (418)
T PRK01610 403 TLRRDSIYRQHTAEH 417 (418)
T ss_pred HhCCCCchHHHHhcc
Confidence 98 999999998754
No 11
>PRK05277 chloride channel protein; Provisional
Probab=100.00 E-value=3.1e-58 Score=521.05 Aligned_cols=410 Identities=28% Similarity=0.469 Sum_probs=334.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHH
Q 003885 106 TLALLIGVLTGLAAVFCNFFVENIAGFKLLLINNLMLNDRHFMGFVANTSINLGLAILAAILCAYIAPAAAGSGIPEVKA 185 (789)
Q Consensus 106 ~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~ 185 (789)
++++++|+++|+++.+|+..+++++++++...... ....+..|..+++++.+++.++.+++.++.|.++|+|+||+++
T Consensus 2 ~~~i~iGi~~Gl~~~~f~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~p~~~GsGi~~i~~ 79 (438)
T PRK05277 2 FMAAVVGTLTGLVGVAFELAVDWVQNQRLGLLASV--ADNGLLLWIVAFLISAVLAMIGYFLVRRFAPEAGGSGIPEIEG 79 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccchHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHH
Confidence 46889999999999999999999999987664321 1112233444556677777888889999999999999999999
Q ss_pred HHhCCCCCCccchhhHHHHHHhhhhhhhccccccCchhHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhHHHh
Q 003885 186 YLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITC 265 (789)
Q Consensus 186 ~lng~~~~~~l~~~~l~~K~~~~i~sv~sG~svG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv~~ 265 (789)
++++.+.. ...++++.|++++++++++|+|+|||||++|+|+++|+++++ +++. +++.++|++++|
T Consensus 80 ~l~~~~~~--~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iGa~ig~~~~~-----------~~~~-~~~~~~~~li~~ 145 (438)
T PRK05277 80 ALEGLRPV--RWWRVLPVKFFGGLGTLGSGMVLGREGPTVQMGGNIGRMVLD-----------IFRL-RSDEARHTLLAA 145 (438)
T ss_pred HHcCCCcc--chHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHH-----------Hccc-CCHHHHHHHHHH
Confidence 99985422 226789999999999999999999999999999999999987 3332 256789999999
Q ss_pred hhhhhhhhhccCcchhhhHHHhHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCcceEEeccCCCCC
Q 003885 266 GAAAGVAGAFRAPVGGVLFALEEAASWW--RSALLWRTFFTTAVVAVVLRGFIEFCRSGRCGLFGQGGLIMFDVNSAKNS 343 (789)
Q Consensus 266 GaAAGvaaaF~APigGvLFalE~~~~~~--~~~~~~~~f~~~~va~~v~~~l~~~~~~~~~~~f~~~~~~~f~~~~~~~~ 343 (789)
|+|||+||+||||++|++|++|++.+.+ +.+.+++.++++++++++.+.+ +++.+ .|+++. ...
T Consensus 146 G~aaglaa~f~APl~g~lf~~E~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~-----------~g~~~--~~~~~~-~~~ 211 (438)
T PRK05277 146 GAAAGLAAAFNAPLAGILFVIEEMRPQFRYSLISIKAVFIGVIMATIVFRLF-----------NGEQA--VIEVGK-FSA 211 (438)
T ss_pred HHHHhHHHhcCCchHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHh-----------cCCCc--eEeccC-CCC
Confidence 9999999999999999999999988644 5566788888888888877753 22233 345542 234
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhhhhhcccccccccCCCCCCcccCC
Q 003885 344 YSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFKVLLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADR 423 (789)
Q Consensus 344 ~~~~~l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~ 423 (789)
.+..++++++++|+++|++|.+|+++..++.+++++++.+.+++.++.+.+++++++++.++.|..
T Consensus 212 ~~~~~l~~~i~lGi~~G~~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gl~~g~l~~~~p~~-------------- 277 (438)
T PRK05277 212 PPLNTLWLFLLLGIIFGIFGVLFNKLLLRTQDLFDRLHGGNKKRWVLMGGAVGGLCGLLGLLAPAA-------------- 277 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHhhhh--------------
Confidence 567899999999999999999999999999998877653323334456677778888887776654
Q ss_pred CCCCCCCCCccccccCCCcchhhhhhhccCchHHHHhhhcCCCCccchHHHHHHHHHHHHHHHHHHhcCcCCcccchHHH
Q 003885 424 CPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVI 503 (789)
Q Consensus 424 ~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~L~~~~~~k~~lt~~t~g~g~~gG~f~P~l 503 (789)
.| ++++.+...+++ ++++..++++++.|++++++|+|+|+|||+|.|++
T Consensus 278 ---~g------------------------~G~~~i~~~~~~----~~~~~~l~~~~~~K~i~t~ls~gsG~~GG~f~Psl 326 (438)
T PRK05277 278 ---VG------------------------GGFNLIPIALAG----NFSIGMLLFIFVARFITTLLCFGSGAPGGIFAPML 326 (438)
T ss_pred ---cC------------------------ChHHHHHHHHcC----CchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 11 122334444432 45566777788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhc---cCcchHHHHHHHHHhhhhhhchhhHHHHhHHHhhcCCCccHHHHHHHHHHHHHHHHhh-C
Q 003885 504 LAGASYGRLVGNLLGAL---SDLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKTVADSF-N 579 (789)
Q Consensus 504 ~iGa~~G~l~g~~~~~~---~~~~~~~~alvGaaA~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~-~ 579 (789)
++||++|+++|.+++.. ...+|..|+++||+|++++++|+|+|++++++|+||++++++|+|+++++|+++++.+ +
T Consensus 327 ~iGa~~G~~~g~~~~~~~p~~~~~~~~~a~~G~aA~la~~~~aPlt~~v~~~Eltg~~~~l~p~lia~~~A~~v~~~~~~ 406 (438)
T PRK05277 327 ALGTLLGLAFGMVAAALFPQYHIEPGTFAIAGMGALFAATVRAPLTGIVLVLEMTDNYQLILPLIITCLGATLLAQFLGG 406 (438)
T ss_pred HHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999987653 2568999999999999999999999999999999999999999999999999999999 7
Q ss_pred chhHHHHHHHc
Q 003885 580 QGVYDQIVKLK 590 (789)
Q Consensus 580 ~~iy~~~l~~k 590 (789)
+++||.++++.
T Consensus 407 ~~iy~~~l~~~ 417 (438)
T PRK05277 407 KPIYSALLERT 417 (438)
T ss_pred CChHHHHHHHH
Confidence 99999999875
No 12
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=2.9e-56 Score=497.73 Aligned_cols=385 Identities=27% Similarity=0.381 Sum_probs=307.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhCC---CC
Q 003885 116 GLAAVFCNFFVENIAGFKLLLINNLMLNDRHFMGFVANTSINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGI---DA 192 (789)
Q Consensus 116 Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~~lng~---~~ 192 (789)
|+++.+|+..+++++++.+..... + +|+.+++.+++.+ +.++++.+++|.++||||||+++.+++. +.
T Consensus 1 g~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~p~~~~-~~~~~~~~~~p~~~gsGi~~v~~~~~~~~~~~~ 71 (390)
T cd01034 1 GLVALLFAKLADLALALFQRLTAT----H----PWLPLLLTPAGFA-LIAWLTRRFFPGAAGSGIPQVIAALELPSAAAR 71 (390)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHh----c----hHHHHHHHHHHHH-HHHHHHHhhCCCCCCCCHHHHHHHHcccccccc
Confidence 567888999999998887754321 1 2333445555544 4555666789999999999999999853 35
Q ss_pred CCccchhhHHHHHHhhhhhhhccccccCchhHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhHHHhhhhhhhh
Q 003885 193 HSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGAAAGVA 272 (789)
Q Consensus 193 ~~~l~~~~l~~K~~~~i~sv~sG~svG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv~~GaAAGva 272 (789)
++.+++|+++.|++++++++++|+|+|||||++|+|+++|++++| +++. +++++||++++||+|||+|
T Consensus 72 ~~~~~~r~~~~k~i~~~l~i~~G~s~GrEGP~v~iga~i~~~~~~-----------~~~~-~~~~~~r~li~~GaaAGla 139 (390)
T cd01034 72 RRLLSLRTAVGKILLTLLGLLGGASVGREGPSVQIGAAVMLAIGR-----------RLPK-WGGLSERGLILAGGAAGLA 139 (390)
T ss_pred cccccHHHHHHHHHHHHHHHHcCCCcCCcccHHHHHHHHHHHHHH-----------Hccc-CchHHHHHHHHHHHHHhHH
Confidence 668999999999999999999999999999999999999999997 3332 2468999999999999999
Q ss_pred hhccCcchhhhHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCcceEEeccCCCCCcchhhHHHH
Q 003885 273 GAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFIEFCRSGRCGLFGQGGLIMFDVNSAKNSYSSADLLAV 352 (789)
Q Consensus 273 aaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~l~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~~~~l~~~ 352 (789)
|+||||++|++|++||+.++|+.+..++.+.++.+++++.+.+ +++.+ .|+++. ...+++.+++++
T Consensus 140 a~F~aPlaG~lF~~E~~~~~~~~~~~~~~~~~~~~a~~~~~~~-----------~g~~~--~f~~~~-~~~~~~~~~~~~ 205 (390)
T cd01034 140 AAFNTPLAGIVFAIEELSRDFELRFSGLVLLAVIAAGLVSLAV-----------LGNYP--YFGVAA-VALPLGEAWLLV 205 (390)
T ss_pred HHhCCcchhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH-----------cCCCC--ccCCCC-CCcCCHHHHHHH
Confidence 9999999999999999999998888888888888888776643 23332 344442 233667889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCchhHHHHHHHHHHHhhhhhcccccccccCCCCCCcccCCCCCCCCCC
Q 003885 353 IFLGVIGGIFGSFYNYLVDKVLRTYSIINE-RGPIFKVLLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSG 431 (789)
Q Consensus 353 i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~p~~g~~g 431 (789)
+++|+++|++|.+|++.+.++.+++++... +.+.++++.+.+.+++++++.++.|.. .
T Consensus 206 illGii~G~~g~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~-----------------~---- 264 (390)
T cd01034 206 LVCGVVGGLAGGLFARLLVALSSGLPGWVRRFRRRRPVLFAALCGLALALIGLVSGGL-----------------T---- 264 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHhCCCc-----------------c----
Confidence 999999999999999999999888776432 223345566667777777776655421 0
Q ss_pred CccccccCCCcchhhhhhhccCchHHHHhhhcCCCCccchHHHHHHHHHHHHHHHHHHhcCcCCcccchHHHHHHHHHHH
Q 003885 432 NYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGR 511 (789)
Q Consensus 432 ~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~L~~~~~~k~~lt~~t~g~g~~gG~f~P~l~iGa~~G~ 511 (789)
++++++.++..++++. .. ...+++.|+++|++|+|+|+|||.|.|++++||++|+
T Consensus 265 -------------------~G~G~~~i~~~~~~~~--~~----~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~iGa~~G~ 319 (390)
T cd01034 265 -------------------FGTGYLQARAALEGGG--GL----PLWFGLLKFLATLLSYWSGIPGGLFAPSLAVGAGLGS 319 (390)
T ss_pred -------------------ccCcHHHHHHHHhCCC--cc----cHHHHHHHHHHHHHHHHcCCCcceechHHHHHHHHHH
Confidence 1112233444444321 11 2235679999999999999999999999999999999
Q ss_pred HHHHHhhhccCcchHHHHHHHHHhhhhhhchhhHHHHhHHHhhcCCCccHHHHHHHHHHHHHHHHhh-CchhHH
Q 003885 512 LVGNLLGALSDLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKTVADSF-NQGVYD 584 (789)
Q Consensus 512 l~g~~~~~~~~~~~~~~alvGaaA~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~-~~~iy~ 584 (789)
+++.+++ ..+|..|+++||+|++++++|+|++++++++|+||++++++|+|+++++|+++++.+ .+++||
T Consensus 320 ~~~~~~~---~~~~~~~a~~G~aA~laa~~~aPlt~~vl~~Elt~~~~~l~p~lia~~~A~~v~~~~~~~~iY~ 390 (390)
T cd01034 320 LLAALLG---SVSQGALVLLGMAAFLAGVTQAPLTAFVIVMEMTGDQQMLLPLLAAALLASGVSRLVCPEPLYH 390 (390)
T ss_pred HHHHHhc---CCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 9999885 358999999999999999999999999999999999999999999999999999998 789986
No 13
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=6.8e-56 Score=493.37 Aligned_cols=385 Identities=22% Similarity=0.297 Sum_probs=308.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhCCC
Q 003885 112 GVLTGLAAVFCNFFVENIAGFKLLLINNLMLNDRHFMGFVANTSINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGID 191 (789)
Q Consensus 112 Gv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~~lng~~ 191 (789)
|+++|+++.+|+..+++++++.+........+.....+|++..+.+++.+++++++..++ + ..|+|+||+++++++.
T Consensus 1 G~~~gl~a~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ggl~~~l~~~~~-~-~~g~gi~~v~~~~~~~- 77 (388)
T cd01033 1 GVGAGLGGGLLTLLLHGVQHLAFGYSEGSFLTGVAAVSPIRRALSLTVGGLIAGLGWYLL-R-RKGKKLVSIKQAVRGK- 77 (388)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCccccchhhhccCChHHHHHHHHHHHHHHHHHHHHH-h-ccCCCcccHHHHhcCC-
Confidence 688999999999999999999876432111111011123333345566666666554333 3 4699999999999973
Q ss_pred CCCccchhhHHHHHHhhhhhhhccccccCchhHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhHHHhhhhhhh
Q 003885 192 AHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGAAAGV 271 (789)
Q Consensus 192 ~~~~l~~~~l~~K~~~~i~sv~sG~svG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv~~GaAAGv 271 (789)
+.+++++.+.|.+++++++++|+|+|||||++|+|+++|+++++ +++. ++++||++++||+|||+
T Consensus 78 --~~~~~~~~~~k~~~~~l~ig~G~s~G~EGP~v~iGa~i~~~~~~-----------~~~~--~~~~~r~li~~GaaAGl 142 (388)
T cd01033 78 --KRMPFWETIIHAVLQIVTVGLGAPLGREVAPREVGALLAQRFSD-----------WLGL--TVADRRLLVACAAGAGL 142 (388)
T ss_pred --CCCCHHHHHHHHHHHHhhhhcCCCcCcccHHHHHHHHHHHHHHH-----------HhCC--CHHHHHHHHHHHHHHHH
Confidence 45888999999999999999999999999999999999999987 3443 67899999999999999
Q ss_pred hhhccCcchhhhHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCcceEEeccCCCCCcchhhHHH
Q 003885 272 AGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFIEFCRSGRCGLFGQGGLIMFDVNSAKNSYSSADLLA 351 (789)
Q Consensus 272 aaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~l~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~~~~l~~ 351 (789)
||+||||++|++|++|++.++|+.+.++++++++.+++++.+.+ +++.+ .|.++. .++++.++++
T Consensus 143 aa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~-----------~g~~~--~f~~~~--~~~~~~~l~~ 207 (388)
T cd01033 143 AAVYNVPLAGALFALEILLRTISLRSVVAALATSAIAAAVASLL-----------KGDHP--IYDIPP--MQLSTPLLIW 207 (388)
T ss_pred HHHhCCchHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh-----------CCCCc--eeecCC--CCCCHHHHHH
Confidence 99999999999999999999999888889999988888887753 23333 455553 3345789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhhhhhcccccccccCCCCCCcccCCCCCCCCCC
Q 003885 352 VIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFKVLLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSG 431 (789)
Q Consensus 352 ~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~p~~g~~g 431 (789)
++++|+++|++|.+|+++++++.+++++. .+.++.+.+.+++++++.++.|+. .|
T Consensus 208 ~illGi~~Gl~~~lf~~~~~~~~~~~~~~-----~~~~~~~~l~gl~~g~~~~~~p~~-----------------~G--- 262 (388)
T cd01033 208 ALLAGPVLGVVAAGFRRLSQAARAKRPKG-----KRILWQMPLAFLVIGLLSIFFPQI-----------------LG--- 262 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cchHHHHHHHHHHHHHHHHHHHHH-----------------hC---
Confidence 99999999999999999999988876422 122344556777788877777765 11
Q ss_pred CccccccCCCcchhhhhhhccCchHHHHhhhcCCCCccchHHHHHHHHHHHHHHHHHHhcCcCCcccchHHHHHHHHHHH
Q 003885 432 NYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGR 511 (789)
Q Consensus 432 ~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~L~~~~~~k~~lt~~t~g~g~~gG~f~P~l~iGa~~G~ 511 (789)
++++.++.++++ +++...++.+++.|+++|++|+|+|.|||+|.|++++||+.|+
T Consensus 263 ---------------------~G~~~i~~~~~~----~~~~~~ll~~~~~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~ 317 (388)
T cd01033 263 ---------------------NGRALAQLAFST----TLTLSLLLILLVLKIVATLLALRAGAYGGLLTPSLALGALLGA 317 (388)
T ss_pred ---------------------CcHHHHHHHHcC----CchHHHHHHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHH
Confidence 123334555543 3455667778899999999999999999999999999999999
Q ss_pred HHHHHhhhc-cCcchHHHHHHHHHhhhhhhchhhHHHHhHHHhhcC-CCccHHHHHHHHHHHHHHHHhhC
Q 003885 512 LVGNLLGAL-SDLDTGLFALLGAASFLGGTMRMTVSLCVILLELTN-NLLMLPLVMLVLLISKTVADSFN 579 (789)
Q Consensus 512 l~g~~~~~~-~~~~~~~~alvGaaA~l~g~~r~pis~~vi~~ElTg-~~~~l~pimia~~ia~~v~~~~~ 579 (789)
++|++++.. +..++..|+++||||++++++|+|++++++++|+|| +++.++|+|+++++|+.+++.+.
T Consensus 318 ~~g~~~~~~~p~~~~~~~a~~GmaA~laa~~~aPlt~ivl~~Eltg~~~~~l~Pl~ia~~~a~~vs~~~~ 387 (388)
T cd01033 318 LLGIVWNALLPPLSIAAFALIGAAAFLAATQKAPLTALILVLEFTRQNPLFLIPLMLAVAGAVAVSRFIL 387 (388)
T ss_pred HHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 999998753 356789999999999999999999999999999999 99999999999999999998763
No 14
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=100.00 E-value=9e-57 Score=496.09 Aligned_cols=346 Identities=35% Similarity=0.576 Sum_probs=280.9
Q ss_pred HHHHHHHHHHHhccCCCCCCHHHHHHHHhCCCCCCccchhhHHHHHHhhhhhhhccccccCchhHHHHHHHHHHHhhccC
Q 003885 160 LAILAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGG 239 (789)
Q Consensus 160 ~~~~a~~l~~~~~p~a~GsGipev~~~lng~~~~~~l~~~~l~~K~~~~i~sv~sG~svG~EGP~vhiGa~igs~l~~~~ 239 (789)
+++++++++.++.|.++|+||||+++.+++.+. .+++|+.+.|++++++++++|+|+|||||++|+|+++|++++|
T Consensus 2 ~~~~~~~l~~~~~p~~~g~Gi~~v~~~~~~~~~--~~~~~~~~~k~~~~~~s~~~G~s~G~EGp~v~iga~i~~~~~~-- 77 (355)
T PF00654_consen 2 GGLLSGLLWKKFAPEAAGSGIPEVKAALRGKSG--RLPFRTLPVKFVGSILSLGSGLSVGREGPSVQIGAAIGSWLGR-- 77 (355)
T ss_dssp HHHHHHHHHHHC-GGGSB-SHHHHHHHCTTSS-----HHHHHHHHHHHHHHHHHTT-S-BSHHHHHHHHHHHHHHHHH--
T ss_pred EEEEeeHHHHHHCCccCCCCHHHHHHHHhCCCC--CCCHHHHHHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHH--
Confidence 467788899999999999999999999998543 4899999999999999999999999999999999999999987
Q ss_pred ccccchhhhhhcccCChhh-hhhHHHhhhhhhhhhhccCcchhhhHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 003885 240 SKKYHLTWRWLRYFKNDRD-RRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFIEF 318 (789)
Q Consensus 240 s~~~~l~~~~~~~f~~~~~-~r~lv~~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~l~~~ 318 (789)
+++. ++++ +|.+++||+|||+||+||||++|++|++|++.+.++.+.+++.++++.+++++.+.+.+
T Consensus 78 ---------~~~~--~~~~~~r~l~~~g~aAglaa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~~- 145 (355)
T PF00654_consen 78 ---------RFRL--SRNETRRLLLAAGAAAGLAAAFNAPLAGVLFALEELSRDFSVRLLLPALVASIVATLVSRLLFG- 145 (355)
T ss_dssp ---------HTT----CHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHCCTCHCCSTTTHHHHHHHHHHHHHHHHHHHT-
T ss_pred ---------hhcc--cchHHHhHHHHHHHHHHHHHHhcCCcccceehhheeeccccchhhHHHHHHHHHHHHHHHHHcC-
Confidence 3333 3444 77799999999999999999999999999999999999999999999999999987642
Q ss_pred hhcCcccccCCCcceEEe-ccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhHHHHHHHHHH
Q 003885 319 CRSGRCGLFGQGGLIMFD-VNSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFKVLLVAAVSL 397 (789)
Q Consensus 319 ~~~~~~~~f~~~~~~~f~-~~~~~~~~~~~~l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (789)
+.+ .|+ ++. ...+++.++++++++|++||++|.+|+++++++.++++++. +.+.++++++++.++
T Consensus 146 ----------~~~--~f~~~~~-~~~~~~~~~~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~-~~~~~~~l~~~i~gl 211 (355)
T PF00654_consen 146 ----------NHP--IFGSVPQ-LFPFSLWELPLFLLLGIICGLLGALFNRLLRWLRKFFRKLK-RLKIPPILRPVIGGL 211 (355)
T ss_dssp ----------SS---SS---TT------GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHH
T ss_pred ----------cCc--ccccccc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccchHHHHHHHHH
Confidence 222 244 442 34789999999999999999999999999999999988775 344456679999999
Q ss_pred Hhhhhhccccc--ccccCCCCCCcccCCCCCCCCCCCccccccCCCcchhhhhhhccCchHHHHhhhcCCCCccchHHHH
Q 003885 398 LTSCCSYGLPW--LSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKEFHLSTL 475 (789)
Q Consensus 398 ~~~~~~~~~p~--~~~c~~~~~~~~~~~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~L 475 (789)
+++++.++.|+ + ++++++.++.+++++ ...+.+..+
T Consensus 212 ~~g~l~~~~p~~~~-----------------------------------------~g~G~~~i~~ll~~~-~~~~~~~~l 249 (355)
T PF00654_consen 212 VIGLLAFFFPEGSV-----------------------------------------LGSGYELIQSLLSGS-PPWFSLGSL 249 (355)
T ss_dssp HHHHHHHSSGG-SG-----------------------------------------SSSSTTHHHHHCTT-----S-HHHH
T ss_pred HHHHHHHHHhhhcc-----------------------------------------cCCcHHHHHHHHcCC-cchhhHHHH
Confidence 99999999886 3 122233456666542 225778899
Q ss_pred HHHHHHHHHHHHHHhcCcCCcccchHHHHHHHHHHHHHHHHhhhc-c---CcchHHHHHHHHHhhhhhhchhhHHHHhHH
Q 003885 476 LVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGAL-S---DLDTGLFALLGAASFLGGTMRMTVSLCVIL 551 (789)
Q Consensus 476 ~~~~~~k~~lt~~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~~-~---~~~~~~~alvGaaA~l~g~~r~pis~~vi~ 551 (789)
+++++.|++++++|+++|+|||+|+|++++||++|++++.+++.. + ..+|+.|+++||+|++++++|+|+++++|+
T Consensus 250 ~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~~~~~~~~~~~~~~~~~~~~al~G~~a~~~a~~~~Plt~~vl~ 329 (355)
T PF00654_consen 250 LLLFLLKFLATALTLGSGAPGGIFFPSLFIGAALGRLFGALLGSFFPGISSVDPGVYALVGMAAFLAAVTRAPLTAIVLV 329 (355)
T ss_dssp HHHHHHHHHHHHHHHHTT-BSBSHHHHHHHHHHHHHHHHHHHHHH-GGG-T-SHHHHHHHHTTHHHHHHCS-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCccCCCCEEccHHHHHHHHHHHHHHHHHhhCCCcCCCchHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999999999999999999999999999999999999999874 1 237999999999999999999999999999
Q ss_pred HhhcCCCccHHHHHHHHHHHHHHHHh
Q 003885 552 LELTNNLLMLPLVMLVLLISKTVADS 577 (789)
Q Consensus 552 ~ElTg~~~~l~pimia~~ia~~v~~~ 577 (789)
+|+|||+++++|+|+++++|+.++++
T Consensus 330 ~Eltg~~~~~~p~lia~~~a~~v~~~ 355 (355)
T PF00654_consen 330 LELTGDFQLLLPLLIAVAVAYLVARW 355 (355)
T ss_dssp HHHH--GGGHHHHHHHHHHHHHHHH-
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999873
No 15
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-54 Score=487.56 Aligned_cols=410 Identities=31% Similarity=0.481 Sum_probs=323.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHH-HHHHHhccCCCCCCHHH
Q 003885 104 KWTLALLIGVLTGLAAVFCNFFVENIAGFKLLLINNLMLNDRHFMGFVANTSINLGLAILAA-ILCAYIAPAAAGSGIPE 182 (789)
Q Consensus 104 ~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~l~~~~~p~a~GsGipe 182 (789)
.+..+.++|+++++.....+....+.......... ..+....| +.+.....++++++ ++..++.|+++|||+||
T Consensus 22 ~i~~~~~lgvi~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~l~~~~~gl~~g~~~~~~~~p~~~g~Gi~~ 96 (443)
T COG0038 22 LIGIAAALGVIVGLFAVALDLALLLLGRLRGGLLS----AAQAPGPW-LLPLVPALGGLLVGALLVYKFAPEARGSGIPQ 96 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc----ccccchhH-HHHHHHHHHHHHHHHHHHHHhCccccCCChhH
Confidence 34477777888877777777666665544322111 11111122 22333445555555 78889999999999999
Q ss_pred HHHHHhCCCCCCccchhhHHHHHHhhhhhhhccccccCchhHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhH
Q 003885 183 VKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDL 262 (789)
Q Consensus 183 v~~~lng~~~~~~l~~~~l~~K~~~~i~sv~sG~svG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~l 262 (789)
+++.+++. ++.+++|..++|++++++++++|+|+|||||+||+|+++|+.+++ |++. +++|||++
T Consensus 97 ~i~a~~~~--~~~~~~~~~~vk~~~~~l~i~sG~s~GrEGP~vqiga~~g~~~~~-----------~l~~--~~~~~r~L 161 (443)
T COG0038 97 AIEALHGR--KGRISPRVLPVKLVATLLTIGSGASLGREGPSVQIGAAIGSLLGR-----------LLKL--SREDRRIL 161 (443)
T ss_pred HHHHHhcC--CCcccHHHHHHHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHH-----------HhCC--CHHHHHHH
Confidence 99999874 567899999999999999999999999999999999999999997 4443 57899999
Q ss_pred HHhhhhhhhhhhccCcchhhhHHHhHhhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCcceEEeccCCC
Q 003885 263 ITCGAAAGVAGAFRAPVGGVLFALEEAASW-WRSALLWRTFFTTAVVAVVLRGFIEFCRSGRCGLFGQGGLIMFDVNSAK 341 (789)
Q Consensus 263 v~~GaAAGvaaaF~APigGvLFalE~~~~~-~~~~~~~~~f~~~~va~~v~~~l~~~~~~~~~~~f~~~~~~~f~~~~~~ 341 (789)
++||+|||+||+|||||+|++|++||+... |+.+.++..++++.++..+...+ ++.. ..+.+.. .
T Consensus 162 l~~GaAaGlaaaF~aPlagvlF~~E~l~~~~~~~~~l~p~~vaa~va~~v~~~~-----------~~~~--~~~~~~~-~ 227 (443)
T COG0038 162 LAAGAAAGLAAAFNAPLAGALFAIEVLYGRFLEYRALVPVLVAAVVALLVAGLF-----------GGPH--FLLPIVT-T 227 (443)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHc-----------CCCC--ceeeccc-c
Confidence 999999999999999999999999999987 88888888777777777666542 1212 2344443 5
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhhhhhcccccccccCCCCCCccc
Q 003885 342 NSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFKVLLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEA 421 (789)
Q Consensus 342 ~~~~~~~l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~ 421 (789)
..++.++++.++++|+++|++|.+|.++..+..+++++. +..+.+.+.+.+++++.+.++.|...
T Consensus 228 ~~~~~~~~~~~~~lGii~G~~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~l~g~~~l~~P~~l----------- 292 (443)
T COG0038 228 PHMSLWDLLLYLVLGIIAGLFGVLLSRLLALSRRFFRRL----PLPPLLRPALGGLLVGALGLLFPEVL----------- 292 (443)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cchHHHHHHHHHHHHHHHHHhchhhh-----------
Confidence 668899999999999999999999999987775554433 33466778888888888888888761
Q ss_pred CCCCCCCCCCCccccccCCCcchhhhhhhccCchHHHHhhhcCCCCccchHHHHHHHHHHHHHHHHHHhcCcCCcccchH
Q 003885 422 DRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIP 501 (789)
Q Consensus 422 ~~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~L~~~~~~k~~lt~~t~g~g~~gG~f~P 501 (789)
|. .|+.+ ...++ .++.+..++.+++.|++.|++|+|+|+|||+|+|
T Consensus 293 ------g~------------G~~~~------------~~~~~----~~~~~~~l~~l~~~K~l~t~~s~gSG~~GGif~P 338 (443)
T COG0038 293 ------GN------------GYGLI------------QLALA----GEGGLLVLLLLFLLKLLATLLSYGSGAPGGIFAP 338 (443)
T ss_pred ------CC------------CccHH------------HHHHc----cCccHHHHHHHHHHHHHHHHHHHhcCCCcceehH
Confidence 11 12221 11121 2333333677788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcc---CcchHHHHHHHHHhhhhhhchhhHHHHhHHHhhcCCCccHHHHHHHHHHHHHHHHhh
Q 003885 502 VILAGASYGRLVGNLLGALS---DLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKTVADSF 578 (789)
Q Consensus 502 ~l~iGa~~G~l~g~~~~~~~---~~~~~~~alvGaaA~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~ 578 (789)
++++||++|.++|.+++... ...|..|+++||+|++++++|+|++++++++|+||+++.++|+|+++++|+.+++..
T Consensus 339 sl~iGa~lG~~~g~~~~~~~~~~~~~~~~~al~Gm~a~la~~~~aPlta~vlv~EmTg~~~~~l~ll~a~~ia~~~~~~~ 418 (443)
T COG0038 339 SLFIGAALGLAFGALLGLLFPPSILEPGLFALLGMAAFLAATTRAPLTAIVLVLEMTGNYQLLLPLLIACLIAYLVSRLL 418 (443)
T ss_pred HHHHHHHHHHHHHHHHHhhcCccccchHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHh
Confidence 99999999999999987642 245779999999999999999999999999999999999999999999999999988
Q ss_pred -CchhHHHHHHHcCCCccc
Q 003885 579 -NQGVYDQIVKLKGLPYLE 596 (789)
Q Consensus 579 -~~~iy~~~l~~kg~p~l~ 596 (789)
..++|+..+++++.+..+
T Consensus 419 ~~~~~~~~~~~~~~~~~~~ 437 (443)
T COG0038 419 GGRPIYTQLLARRGAPILR 437 (443)
T ss_pred CCCcHHHHHHHhcCchhhh
Confidence 889999999999887443
No 16
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=100.00 E-value=3.3e-52 Score=465.27 Aligned_cols=380 Identities=31% Similarity=0.458 Sum_probs=312.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhCCC
Q 003885 112 GVLTGLAAVFCNFFVENIAGFKLLLINNLMLNDRHFMGFVANTSINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGID 191 (789)
Q Consensus 112 Gv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~~lng~~ 191 (789)
|+++|+++.+|+..+++++++++....+.. .....+++++...+++.+++++++..+..| +.|+|+|++++.+++.
T Consensus 1 Gi~~Gl~~~lf~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~v~l~~~~~~~-~~g~G~~~v~~~~~~~- 76 (383)
T cd00400 1 GVLSGLGAVLFRLLIELLQNLLFGGLPGEL--AAGSLSPLYILLVPVIGGLLVGLLVRLLGP-ARGHGIPEVIEAIALG- 76 (383)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcccccc--ccccccHHHHHHHHHHHHHHHHHHHHHhCc-ccCCChHHHHHHHHhC-
Confidence 688999999999999999998876533211 011223455566677777777777766666 8999999999988863
Q ss_pred CCCccchhhHHHHHHhhhhhhhccccccCchhHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhHHHhhhhhhh
Q 003885 192 AHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGAAAGV 271 (789)
Q Consensus 192 ~~~~l~~~~l~~K~~~~i~sv~sG~svG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv~~GaAAGv 271 (789)
++.+++++++.|++++++++++|+|+|+|||++|+|+++|+++++ +++. ++.++|.+++||+|||+
T Consensus 77 -~~~~~~~~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~~g~~~~~-----------~~~~--~~~~~~~l~~~G~aagl 142 (383)
T cd00400 77 -GGRLPLRVALVKFLASALTLGSGGSVGREGPIVQIGAAIGSWLGR-----------RLRL--SRNDRRILVACGAAAGI 142 (383)
T ss_pred -CCCCCHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHH-----------HhCC--CHHHHHHHHHHHHHHHH
Confidence 346789999999999999999999999999999999999999987 3332 56789999999999999
Q ss_pred hhhccCcchhhhHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCcceEEeccCCCCCcchhhHHH
Q 003885 272 AGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFIEFCRSGRCGLFGQGGLIMFDVNSAKNSYSSADLLA 351 (789)
Q Consensus 272 aaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~l~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~~~~l~~ 351 (789)
+|+||||++|++|++|++.++|+.+.+++.++++.++..+.+.+. ++.. .|+++. ..++++.++++
T Consensus 143 aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~a~~v~~~~~-----------~~~~--~~~~~~-~~~~~~~~~~~ 208 (383)
T cd00400 143 AAAFNAPLAGALFAIEVLLGEYSVASLIPVLLASVAAALVSRLLF-----------GAEP--AFGVPL-YDPLSLLELPL 208 (383)
T ss_pred HHhcCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-----------CCCC--eeeCCC-CCcCCHHHHHH
Confidence 999999999999999999999988888999999888888877542 2222 455553 46788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhhhhhcccccccccCCCCCCcccCCCCCCCCCC
Q 003885 352 VIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFKVLLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSG 431 (789)
Q Consensus 352 ~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~p~~g~~g 431 (789)
++++|+++|++|.+|+++++++.+++++.+ +++++.+++.+++++++.++.|+.. |.
T Consensus 209 ~il~Gv~~g~~g~~f~~~~~~~~~~~~~~~----~~~~~~~~i~gll~~~~~~~~p~~~-----------------g~-- 265 (383)
T cd00400 209 YLLLGLLAGLVGVLFVRLLYKIERLFRRLP----IPPWLRPALGGLLLGLLGLFLPQVL-----------------GS-- 265 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccC----CcHHHHHHHHHHHHHHHHHHHHHHH-----------------cC--
Confidence 999999999999999999999988876542 3456677788888888888888761 10
Q ss_pred CccccccCCCcchhhhhhhccCchHHHHhhhcCCCCccchHHHHHHHHHHHHHHHHHHhcCcCCcccchHHHHHHHHHHH
Q 003885 432 NYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGR 511 (789)
Q Consensus 432 ~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~L~~~~~~k~~lt~~t~g~g~~gG~f~P~l~iGa~~G~ 511 (789)
.|+. +...++ ++++...++.+++.|++++++|+|+|+|||.|+|++++||++|+
T Consensus 266 ----------G~~~------------~~~~~~----~~~~~~~l~~~~~~K~~~t~l~~~sG~~GG~~~P~l~iGa~~G~ 319 (383)
T cd00400 266 ----------GYGA------------ILLALA----GELSLLLLLLLLLLKLLATALTLGSGFPGGVFAPSLFIGAALGA 319 (383)
T ss_pred ----------cHHH------------HHHHHc----CChhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHH
Confidence 1222 233332 34566677778899999999999999999999999999999999
Q ss_pred HHHHHhhhc---cCcchHHHHHHHHHhhhhhhchhhHHHHhHHHhhcCCCccHHHHHHHHHHHH
Q 003885 512 LVGNLLGAL---SDLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISK 572 (789)
Q Consensus 512 l~g~~~~~~---~~~~~~~~alvGaaA~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~ia~ 572 (789)
+++++++.. ...+|..|+++||+|++++++|+|++++++++|+||+++.++|+|+++++||
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~G~aa~la~~~~aPlt~~vl~~Eltg~~~~l~p~~ia~~ia~ 383 (383)
T cd00400 320 AFGLLLPALFPGLVASPGAYALVGMAALLAAVLRAPLTAILLVLELTGDYSLLLPLMLAVVIAY 383 (383)
T ss_pred HHHHHHHHhCCcccCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHhCChhhHHHHHHHHHhcC
Confidence 999998753 3468999999999999999999999999999999999999999999999875
No 17
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=5.3e-49 Score=437.28 Aligned_cols=375 Identities=22% Similarity=0.323 Sum_probs=289.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHH
Q 003885 108 ALLIGVLTGLAAVFCNFFVENIAGFKLLLINNLMLNDRHFMGFVANTSINLGLAILAAILCAYIAPAAAGSGIPEVKAYL 187 (789)
Q Consensus 108 ~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~~l 187 (789)
++++|+++|+++.+|+..++++.++++. .+|+.+ .+++ .+++.+++..++.|. .|+|++|+++.+
T Consensus 2 a~~iGii~G~~~~~f~~~i~~~~~~~~~------------~~~~~~-~~p~-~g~~i~~l~~~~~~~-~~~g~~~v~~~~ 66 (378)
T cd03682 2 ALLIGLLVGSASALFLWSLDWATEFREA------------HPWLLP-FLPL-AGLLIGYLYQKFGKN-SEKGNNLIIEEI 66 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH------------hhHHHH-HHHH-HHHHHHHHHHHhCcc-cCCChHHHHHHH
Confidence 6799999999999999999999887542 123222 2233 344555677666555 567999998887
Q ss_pred hCCCCCCccchhhHHHHHHhhhhhhhccccccCchhHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhHHHhhh
Q 003885 188 NGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGA 267 (789)
Q Consensus 188 ng~~~~~~l~~~~l~~K~~~~i~sv~sG~svG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv~~Ga 267 (789)
++. .+.+++|.++.|++++.+++++|+|+|||||++|+|+++|+++++ ++|. +++++|++++||+
T Consensus 67 ~~~--~~~~~~~~~~~k~~~~~l~l~~G~s~G~Egp~v~~ga~~~~~~~~-----------~~~~--~~~~~r~l~~~g~ 131 (378)
T cd03682 67 HGP--EEGIPLRMAPLVLFGTVLTHLFGGSAGREGTAVQMGGSLADAFGR-----------VFKL--PEEDRRILLIAGI 131 (378)
T ss_pred Hcc--CCCCchHHHHHHHHHHHHHHHcCCccCCcchHHHHHHHHHHHHHH-----------HhCC--CHHHHHHHHHHHH
Confidence 752 356778999999999999999999999999999999999999987 3332 5668899999999
Q ss_pred hhhhhhhccCcchhhhHHHhHhh-hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCcceEEeccCCCCCcch
Q 003885 268 AAGVAGAFRAPVGGVLFALEEAA-SWWRSALLWRTFFTTAVVAVVLRGFIEFCRSGRCGLFGQGGLIMFDVNSAKNSYSS 346 (789)
Q Consensus 268 AAGvaaaF~APigGvLFalE~~~-~~~~~~~~~~~f~~~~va~~v~~~l~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~~ 346 (789)
|||++|+||||++|++|++|++. +.++.+.+++.++++.+++.+.+.+ +.+. ..|.++. ..++++
T Consensus 132 aAglaa~f~aPl~g~~f~~E~~~~~~~~~~~~~~~~i~~~~a~~v~~~~------------~~~~-~~~~~~~-~~~~~~ 197 (378)
T cd03682 132 AAGFAAVFGTPLAGAIFALEVLVLGRLRYSALIPCLVAAIVADWVSHAL------------GLEH-THYHIVF-IPTLDP 197 (378)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh------------CCCC-CccccCC-CCCCCH
Confidence 99999999999999999999995 5555566666677666666655432 1111 1244442 456788
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhhhhhcccccccccCCCCCCcccCCCCC
Q 003885 347 ADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFKVLLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPT 426 (789)
Q Consensus 347 ~~l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~p~ 426 (789)
.++++++++|+++|++|.+|+++.+++.+++++.. ..+++.+.+.+++++++.++.+.- ..
T Consensus 198 ~~l~~~i~~Gi~~gl~g~~f~~~~~~~~~~~~~~~----~~~~~~~~iggl~~g~~~~~~~~~-------~~-------- 258 (378)
T cd03682 198 LLFVKVILAGIIFGLAGRLFAELLHFLKKLLKKRI----KNPYLRPFVGGLLIILLVYLLGSR-------RY-------- 258 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CCcHHHHHHHHHHHHHHHHHhcCC-------cc--------
Confidence 99999999999999999999999999988876543 223455666677777766544321 00
Q ss_pred CCCCCCccccccCCCcchhhhhhhccCchHHHHh-hhcCCCCccchHHHHHHHHHHHHHHHHHHhcCcCCcccchHHHHH
Q 003885 427 VGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRN-LFSSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILA 505 (789)
Q Consensus 427 ~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~-lf~~~~~~~~~~~~L~~~~~~k~~lt~~t~g~g~~gG~f~P~l~i 505 (789)
.|. .|+. ++. ++++ +.. ...++.|+++|++|+|+|+|||+|+|++++
T Consensus 259 ~G~------------g~~~------------i~~~~~~~----~~~----~~~~l~K~~~t~~s~g~G~~GG~f~P~l~i 306 (378)
T cd03682 259 LGL------------GTPL------------IEDSFFGG----TVY----PYDWLLKLIFTVITLGAGFKGGEVTPLFFI 306 (378)
T ss_pred ccC------------CHHH------------HHHHHhcC----Cch----HHHHHHHHHHHHHHHhcCCCCceechHHHH
Confidence 110 1222 222 2221 222 123468999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCcchHHHHHHHHHhhhhhhchhhHHHHhHHHhhcCCCccHHHHHHHHHHHHHHHHhhCchhHH
Q 003885 506 GASYGRLVGNLLGALSDLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKTVADSFNQGVYD 584 (789)
Q Consensus 506 Ga~~G~l~g~~~~~~~~~~~~~~alvGaaA~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~~~~iy~ 584 (789)
||++|+++++++ ..++..|+++||+|++++++|+|++++++++|+|| ...++|+|+++++|+.+++ +++||+
T Consensus 307 Ga~~G~~~~~~~----~~~~~~~~~~Gmaa~laa~~raPlt~ivl~~Eltg-~~~~~p~~ia~~ia~~~~~--~~~iy~ 378 (378)
T cd03682 307 GATLGNALAPIL----GLPVSLLAALGFVAVFAGATNTPLACIIMGIELFG-AENAPYFFIACLVAYLFSG--HTGIYG 378 (378)
T ss_pred HHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhC-ccchHHHHHHHHHHHHHhC--CCCCCC
Confidence 999999999998 46789999999999999999999999999999999 5788899999999999997 788884
No 18
>PRK03655 putative ion channel protein; Provisional
Probab=100.00 E-value=1.8e-46 Score=418.28 Aligned_cols=383 Identities=14% Similarity=0.204 Sum_probs=281.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHH
Q 003885 102 VFKWTLALLIGVLTGLAAVFCNFFVENIAGFKLLLINNLMLNDRHFMGFVANTSINLGLAILAAILCAYIAPAAAGSGIP 181 (789)
Q Consensus 102 ~~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGip 181 (789)
...+++++++|+++|+++++|...+++++++.|....+....... .+| +.+.++.+.+++++++.+ +.|...|+ .|
T Consensus 10 ~~l~~~ailvG~~aGl~a~lf~~li~~~~~l~~~~~~~~~~~~~~-~~~-~~~~~~~~gGllvgll~~-~~~~~~G~-~~ 85 (414)
T PRK03655 10 LLLSLPALAIGIASSLILIVVMKIASVLQNLLWQRLPGTLGIAQD-SPL-WIIGMLTLTGIAVGLVIR-FSPGHAGP-DP 85 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccc-cch-HHHHHHHHHHHHHHHHHH-HcCCCCCC-hH
Confidence 345579999999999999999999999999987654322111111 122 223445667777777764 45766666 57
Q ss_pred HHHHHHhCCCCCCccchhhHHHHHHhhhhhhhccccccCchhHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhh
Q 003885 182 EVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRD 261 (789)
Q Consensus 182 ev~~~lng~~~~~~l~~~~l~~K~~~~i~sv~sG~svG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~ 261 (789)
+++...++ .++.+.+..|++++++++++|+|+|||||+||+||+++++++| +++ +..++|+
T Consensus 86 ~~~~~~~~-----~~~~~~~~~~~~~~~l~l~~G~S~GrEGP~VqiGa~igs~~~r-----------~~~---~~~~~~~ 146 (414)
T PRK03655 86 ATEPLIGA-----PVPPSALPGLLLALILGLAGGVSLGPEHPIMTVNIALAVAIGA-----------RLL---PRVNRMD 146 (414)
T ss_pred HHHHHhcC-----CCCccHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHH-----------Hhc---cCCChhH
Confidence 66666432 4567889999999999999999999999999999999999997 221 3356788
Q ss_pred HHHhhhhhhhhhhccCcchhhhHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCcceEEeccCCC
Q 003885 262 LITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFIEFCRSGRCGLFGQGGLIMFDVNSAK 341 (789)
Q Consensus 262 lv~~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~l~~~~~~~~~~~f~~~~~~~f~~~~~~ 341 (789)
++.||+|||+||+||||++|++|++||+.+.+.... |+..+.+.+++.+....... .+ ++.+.++++. .
T Consensus 147 l~~~gaAaGiaAaFnaPLaG~lFa~E~l~~~~~~~~-~~~~~~~v~aa~~a~~v~~~-------~~--~~~~~~~~~~-~ 215 (414)
T PRK03655 147 WTILASAGTIGALFGTPVAAALIFSQTLNGSNEVPL-WDRLFAPLMAAAAGALTTGL-------FF--HPHFSLPIAH-Y 215 (414)
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHH-------hC--CCCcceecCC-C
Confidence 999999999999999999999999999987665422 33334444433332222211 11 1222334442 3
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhhhhhccc-ccccccCCCCCCcc
Q 003885 342 NSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFKVLLVAAVSLLTSCCSYGL-PWLSHCIPCPSYLE 420 (789)
Q Consensus 342 ~~~~~~~l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~c~~~~~~~~ 420 (789)
...+..++++++++|++||++|.+|++..+++.+++++.+ .+ .+...+.++++++++++. |..
T Consensus 216 ~~~~~~~~~~~l~lgi~~gl~G~lf~~~~~~~~~~~~~~~--~p---~~~~~lgGl~vg~l~l~~~~~~----------- 279 (414)
T PRK03655 216 GQMEMTDILSGAIVAAIAIAAGMVAVWCLPRLHALMHRLK--NP---VLVLGIGGFILGILGVIGGPLT----------- 279 (414)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cc---hHHHHHHHHHHHHHHHHhCCcc-----------
Confidence 4567789999999999999999999999988888776542 12 233455666666666543 222
Q ss_pred cCCCCCCCCCCCccccccCCCcchhhhhhhccCchHHHHhhhcCCCCccchHHHHHHHHHHHHHHHHHHhcCcCCcccch
Q 003885 421 ADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFI 500 (789)
Q Consensus 421 ~~~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~L~~~~~~k~~lt~~t~g~g~~gG~f~ 500 (789)
. .++++.++.+... +++++..++++++.|+++|++|+|+|+|||+|+
T Consensus 280 ------~------------------------g~Gy~~i~~~~~~---~~~~~~~ll~l~l~K~lat~ls~~sG~~GGiF~ 326 (414)
T PRK03655 280 ------L------------------------FKGLDEMQQMAAN---QAFSASDYFLLAVVKLAALVVAAASGFRGGRIF 326 (414)
T ss_pred ------c------------------------cCCHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHHHHccCCCCceeh
Confidence 1 1223334443332 245667777788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHhhhhhhch----hhHHHHhHHHhhcCCCccHHHHHHHHHHHHHHH
Q 003885 501 PVILAGASYGRLVGNLLGALSDLDTGLFALLGAASFLGGTMR----MTVSLCVILLELTNNLLMLPLVMLVLLISKTVA 575 (789)
Q Consensus 501 P~l~iGa~~G~l~g~~~~~~~~~~~~~~alvGaaA~l~g~~r----~pis~~vi~~ElTg~~~~l~pimia~~ia~~v~ 575 (789)
|++++||++|..++.+++ ..++...+++||+|+++|++| +|+++.||++|+| +.|+|++++++.|+-
T Consensus 327 PsL~iGA~~G~~~~~l~p---~~~~~~~v~~~m~a~la~vtr~p~~sp~ta~viv~em~-----~~~l~~~~~~~~~~~ 397 (414)
T PRK03655 327 PAVFVGVALGLMLHAHVP---AVPAAITVSCAILGIVLVVTRDGWLSLFMAAVVVPDTT-----LLPLLCIVMLPAWLL 397 (414)
T ss_pred HHHHHHHHHHHHHHHhcc---CCChHHHHHHHHHHHHHHHhccchhhHHHHHHHHhcch-----HHHHHHHHHHHHHHH
Confidence 999999999999999975 567888999999999999999 6999999999999 777788887777765
No 19
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.68 E-value=1.4e-15 Score=170.47 Aligned_cols=183 Identities=20% Similarity=0.217 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHH
Q 003885 103 FKWTLALLIGVLTGLAAVFCNFFVENIAGFKLLLINNLMLNDRHFMGFVANTSINLGLAILAAILCAYIAPAAAGSGIPE 182 (789)
Q Consensus 103 ~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipe 182 (789)
..|...+++|+++|+++.+|+..+.+.++++...... .....+++. ..+.+++.+.+..+..|...|+|.++
T Consensus 200 ~~~~~~illGii~G~~g~lF~~~~~~~~~~~~~~~~~----~~~~~~~~~----~~~~gl~~~~~~~~~~~~~~G~G~~~ 271 (390)
T cd01034 200 EAWLLVLVCGVVGGLAGGLFARLLVALSSGLPGWVRR----FRRRRPVLF----AALCGLALALIGLVSGGLTFGTGYLQ 271 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----ccchhhHHH----HHHHHHHHHHHHHhCCCccccCcHHH
Confidence 3456899999999999999999998887755332110 001111111 12223333333333345788999999
Q ss_pred HHHHHhCCCCCCccchhhHHHHHHhhhhhhhccccccCchhHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhH
Q 003885 183 VKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDL 262 (789)
Q Consensus 183 v~~~lng~~~~~~l~~~~l~~K~~~~i~sv~sG~svG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~l 262 (789)
++..+++. ..+++..++.|++.+++++++|.++|+|+|++++||++|+.+++ +++ ..+.+.+
T Consensus 272 i~~~~~~~---~~~~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~iGa~~G~~~~~-----------~~~----~~~~~~~ 333 (390)
T cd01034 272 ARAALEGG---GGLPLWFGLLKFLATLLSYWSGIPGGLFAPSLAVGAGLGSLLAA-----------LLG----SVSQGAL 333 (390)
T ss_pred HHHHHhCC---CcccHHHHHHHHHHHHHHHHcCCCcceechHHHHHHHHHHHHHH-----------Hhc----CCCchHH
Confidence 99988863 23556788999999999999999999999999999999999987 332 2478899
Q ss_pred HHhhhhhhhhhhccCcchhhhHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 003885 263 ITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRG 314 (789)
Q Consensus 263 v~~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~ 314 (789)
+.|||||++|+++|||+++++|++|++.+ ...+.+.++++.+|..+.+.
T Consensus 334 a~~G~aA~laa~~~aPlt~~vl~~Elt~~---~~~l~p~lia~~~A~~v~~~ 382 (390)
T cd01034 334 VLLGMAAFLAGVTQAPLTAFVIVMEMTGD---QQMLLPLLAAALLASGVSRL 382 (390)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhCC---hhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999974 33455566666665555543
No 20
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.66 E-value=1.3e-15 Score=170.20 Aligned_cols=183 Identities=19% Similarity=0.172 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHH
Q 003885 104 KWTLALLIGVLTGLAAVFCNFFVENIAGFKLLLINNLMLNDRHFMGFVANTSINLGLAILAAILCAYIAPAAAGSGIPEV 183 (789)
Q Consensus 104 ~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev 183 (789)
.+.+.+++|+++|+++.+|+..+.++++++. ..+. .++. ..+.+++.+. +.++.|+..|+|.+.+
T Consensus 204 ~l~~~illGi~~Gl~~~lf~~~~~~~~~~~~--------~~~~--~~~~----~~l~gl~~g~-~~~~~p~~~G~G~~~i 268 (388)
T cd01033 204 LLIWALLAGPVLGVVAAGFRRLSQAARAKRP--------KGKR--ILWQ----MPLAFLVIGL-LSIFFPQILGNGRALA 268 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------cccc--hHHH----HHHHHHHHHH-HHHHHHHHhCCcHHHH
Confidence 4557899999999999999999888776431 1111 1111 1223333333 3466799999999999
Q ss_pred HHHHhCCCCCCccchhhHHHHHHhhhhhhhccccccCchhHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhHH
Q 003885 184 KAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLI 263 (789)
Q Consensus 184 ~~~lng~~~~~~l~~~~l~~K~~~~i~sv~sG~svG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv 263 (789)
...+++...... -+..++.|++.+.+++++|.++|.|+|++.+||++|+.+++ +++.+.++.+.+.++
T Consensus 269 ~~~~~~~~~~~~-ll~~~~~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~-----------~~~~~~p~~~~~~~a 336 (388)
T cd01033 269 QLAFSTTLTLSL-LLILLVLKIVATLLALRAGAYGGLLTPSLALGALLGALLGI-----------VWNALLPPLSIAAFA 336 (388)
T ss_pred HHHHcCCchHHH-HHHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHH-----------HHHHhCCcccHHHHH
Confidence 888876322222 26778999999999999999999999999999999999997 222222345667899
Q ss_pred HhhhhhhhhhhccCcchhhhHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 003885 264 TCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGF 315 (789)
Q Consensus 264 ~~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~l 315 (789)
.|||||.+|+++||||++++|++|++.. +...+.+.++++++++.+.+.+
T Consensus 337 ~~GmaA~laa~~~aPlt~ivl~~Eltg~--~~~~l~Pl~ia~~~a~~vs~~~ 386 (388)
T cd01033 337 LIGAAAFLAATQKAPLTALILVLEFTRQ--NPLFLIPLMLAVAGAVAVSRFI 386 (388)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999652 2455667777777777776643
No 21
>PRK05277 chloride channel protein; Provisional
Probab=99.60 E-value=1.3e-14 Score=165.16 Aligned_cols=187 Identities=19% Similarity=0.249 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHH
Q 003885 104 KWTLALLIGVLTGLAAVFCNFFVENIAGFKLLLINNLMLNDRHFMGFVANTSINLGLAILAAILCAYIAPAAAGSGIPEV 183 (789)
Q Consensus 104 ~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev 183 (789)
.+...+++|+++|+++.+|+..+..++++.... . .++...++ ....+.+++.+.+ .++.|+..|+|.+.+
T Consensus 216 ~l~~~i~lGi~~G~~g~lf~~~~~~~~~~~~~~-----~-~~~~~~~~---~~~~i~gl~~g~l-~~~~p~~~g~G~~~i 285 (438)
T PRK05277 216 TLWLFLLLGIIFGIFGVLFNKLLLRTQDLFDRL-----H-GGNKKRWV---LMGGAVGGLCGLL-GLLAPAAVGGGFNLI 285 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----c-ccccHHHH---HHHHHHHHHHHHH-HHHhhhhcCChHHHH
Confidence 455788999999999999999998887654221 1 11111111 1223334444443 467899999999999
Q ss_pred HHHHhCCCCCCccchhhHHHHHHhhhhhhhccccccCchhHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhHH
Q 003885 184 KAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLI 263 (789)
Q Consensus 184 ~~~lng~~~~~~l~~~~l~~K~~~~i~sv~sG~svG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv 263 (789)
...+++. .+-..-+..++.|++.+.+++++|.++|.++|++++||++|..+++..+ .+++. ++.+...++
T Consensus 286 ~~~~~~~-~~~~~l~~~~~~K~i~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~~~-------~~~p~--~~~~~~~~a 355 (438)
T PRK05277 286 PIALAGN-FSIGMLLFIFVARFITTLLCFGSGAPGGIFAPMLALGTLLGLAFGMVAA-------ALFPQ--YHIEPGTFA 355 (438)
T ss_pred HHHHcCC-chHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH-------HHcCc--ccccHHHHH
Confidence 9988862 2212224467999999999999999999999999999999999886211 01211 344667899
Q ss_pred HhhhhhhhhhhccCcchhhhHHHhHhhhhhhhhhHHHHHHHHHHHHHHHH
Q 003885 264 TCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLR 313 (789)
Q Consensus 264 ~~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~ 313 (789)
.+|+||++|+++|||+++++|++|++.+ ...+.+.++++.+|..+.+
T Consensus 356 ~~G~aA~la~~~~aPlt~~v~~~Eltg~---~~~l~p~lia~~~A~~v~~ 402 (438)
T PRK05277 356 IAGMGALFAATVRAPLTGIVLVLEMTDN---YQLILPLIITCLGATLLAQ 402 (438)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhCC---hhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998764 2344556666666665554
No 22
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.58 E-value=2.4e-14 Score=145.88 Aligned_cols=134 Identities=22% Similarity=0.310 Sum_probs=112.1
Q ss_pred ccccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcc
Q 003885 603 MKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSD 682 (789)
Q Consensus 603 l~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~ 682 (789)
+..++..|||+++++++++++++.++.+.|.+++...+||+|++ .+++|+|+++||.+.-....|..-
T Consensus 242 ~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~-----~rl~GiVt~~dl~~~a~~~p~qrl------- 309 (382)
T COG3448 242 MGELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEH-----RRLVGIVTQRDLLKHARPSPFQRL------- 309 (382)
T ss_pred hccccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccc-----cceeeeeeHHHHhhccCcchHHHh-------
Confidence 45778899999999999999999999999999999999999997 899999999999553221111000
Q ss_pred cccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCC
Q 003885 683 IMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPP 762 (789)
Q Consensus 683 ~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~ 762 (789)
. +.+ ...++.+|++...|+.+|++..+..-.|.+.|+.++||+|+ +|+
T Consensus 310 -----r---~~~---------------------~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~---~g~ 357 (382)
T COG3448 310 -----R---FLR---------------------PPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDA---AGK 357 (382)
T ss_pred -----h---ccC---------------------CCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcC---CCc
Confidence 0 111 12467899999999999999999999999999999999998 999
Q ss_pred EEEEEecccCcchhhhcc
Q 003885 763 IVGILTRHDFMPEHVLGL 780 (789)
Q Consensus 763 vvGIITr~DLl~~~~~~~ 780 (789)
++||||..|++....++.
T Consensus 358 lvGIvsQtDliaal~r~~ 375 (382)
T COG3448 358 LVGIVSQTDLIAALYRNW 375 (382)
T ss_pred EEEEeeHHHHHHHHHHHH
Confidence 999999999998776553
No 23
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.56 E-value=1.1e-14 Score=146.09 Aligned_cols=122 Identities=18% Similarity=0.247 Sum_probs=110.7
Q ss_pred ccccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcc
Q 003885 603 MKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSD 682 (789)
Q Consensus 603 l~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~ 682 (789)
..+.+++++|++++++++++++++++.+.|-+++.++.||+|+ ++++|+++.+|+..++.+..
T Consensus 169 iPk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~------dk~vGiit~~dI~~aia~g~----------- 231 (294)
T COG2524 169 IPKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD------DKIVGIITLSDIAKAIANGN----------- 231 (294)
T ss_pred cCcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC------CceEEEEEHHHHHHHHHcCC-----------
Confidence 4567899999999999999999999999999999999999998 59999999999998876521
Q ss_pred cccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCC
Q 003885 683 IMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPP 762 (789)
Q Consensus 683 ~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~ 762 (789)
....+++||.+++++|++|+.+.+|+++|..++..+|.|+|. +|+
T Consensus 232 --------------------------------~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds---~gk 276 (294)
T COG2524 232 --------------------------------LDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDS---NGK 276 (294)
T ss_pred --------------------------------ccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEcc---CCc
Confidence 124567899999999999999999999999999999999998 899
Q ss_pred EEEEEecccCcchh
Q 003885 763 IVGILTRHDFMPEH 776 (789)
Q Consensus 763 vvGIITr~DLl~~~ 776 (789)
.+|||||+|++...
T Consensus 277 pvGiITrTDIL~~i 290 (294)
T COG2524 277 PVGIITRTDILTRI 290 (294)
T ss_pred EEEEEehHHHHHHh
Confidence 99999999999754
No 24
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=99.54 E-value=8.4e-14 Score=156.03 Aligned_cols=166 Identities=22% Similarity=0.268 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHH
Q 003885 102 VFKWTLALLIGVLTGLAAVFCNFFVENIAGFKLLLINNLMLNDRHFMGFVANTSINLGLAILAAILCAYIAPAAAGSGIP 181 (789)
Q Consensus 102 ~~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGip 181 (789)
+..+...+++|+++|+++.+|+....++++++... ... +.+. .++.+++.+. +.++.|+..|+|.+
T Consensus 203 ~~~~~~~il~Gv~~g~~g~~f~~~~~~~~~~~~~~-----~~~-----~~~~---~~i~gll~~~-~~~~~p~~~g~G~~ 268 (383)
T cd00400 203 LLELPLYLLLGLLAGLVGVLFVRLLYKIERLFRRL-----PIP-----PWLR---PALGGLLLGL-LGLFLPQVLGSGYG 268 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----CCc-----HHHH---HHHHHHHHHH-HHHHHHHHHcCcHH
Confidence 34456899999999999999999998887654321 011 1111 2333444443 45567999999999
Q ss_pred HHHHHHhCCCCCCccchhhHHHHHHhhhhhhhccccccCchhHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhh
Q 003885 182 EVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRD 261 (789)
Q Consensus 182 ev~~~lng~~~~~~l~~~~l~~K~~~~i~sv~sG~svG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~ 261 (789)
++...+++. .+-..-...++.|++.+.+++++|.+.|.|+|++.+||++|..+++. ++. ++. .++.+.+.
T Consensus 269 ~~~~~~~~~-~~~~~l~~~~~~K~~~t~l~~~sG~~GG~~~P~l~iGa~~G~~~~~~----~~~---~~~--~~~~~~~~ 338 (383)
T cd00400 269 AILLALAGE-LSLLLLLLLLLLKLLATALTLGSGFPGGVFAPSLFIGAALGAAFGLL----LPA---LFP--GLVASPGA 338 (383)
T ss_pred HHHHHHcCC-hhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHH----HHH---hCC--cccCChHH
Confidence 988887762 11112245789999999999999999999999999999999999972 111 111 13457889
Q ss_pred HHHhhhhhhhhhhccCcchhhhHHHhHhhh
Q 003885 262 LITCGAAAGVAGAFRAPVGGVLFALEEAAS 291 (789)
Q Consensus 262 lv~~GaAAGvaaaF~APigGvLFalE~~~~ 291 (789)
++.||+||++++++|+|+++++|++|++.+
T Consensus 339 ~~~~G~aa~la~~~~aPlt~~vl~~Eltg~ 368 (383)
T cd00400 339 YALVGMAALLAAVLRAPLTAILLVLELTGD 368 (383)
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHhCC
Confidence 999999999999999999999999999874
No 25
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.54 E-value=4.7e-14 Score=154.66 Aligned_cols=147 Identities=13% Similarity=0.153 Sum_probs=123.3
Q ss_pred CchhHHHHHHHcCCCc---ccccccccc---cccceeecccC--CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCC
Q 003885 579 NQGVYDQIVKLKGLPY---LEAHAEPYM---KNLVASDVVSG--PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTP 650 (789)
Q Consensus 579 ~~~iy~~~l~~kg~p~---l~~~~~~~l---~~l~v~dvM~~--~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~ 650 (789)
..++|...+..+|.-. ...++...+ ..++|+|+|++ +++++++++++.++.+.|.+++++.+||+|++
T Consensus 169 ~dsL~~~~l~~~g~~~~~~~~~~~~~~l~~~~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~---- 244 (326)
T PRK10892 169 GDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDN---- 244 (326)
T ss_pred HHHHHHHHHHHhCCCHHHHHhcCCCchhcccccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCC----
Confidence 5688998999888876 566666667 88999999997 89999999999999999988888788888876
Q ss_pred CCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeee
Q 003885 651 APELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTV 730 (789)
Q Consensus 651 ~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV 730 (789)
++++|+|+.+|+...+.+... . ...++.++|++++.++
T Consensus 245 -g~lvGivt~~Dl~~~~~~~~~------------------------------~-----------~~~~v~~im~~~~~~v 282 (326)
T PRK10892 245 -MKIEGIFTDGDLRRVFDMGID------------------------------L-----------RQASIADVMTPGGIRV 282 (326)
T ss_pred -CcEEEEEecHHHHHHHhcCCC------------------------------c-----------ccCCHHHhcCCCCEEE
Confidence 899999999999765432100 0 0124567899999999
Q ss_pred cCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcch
Q 003885 731 VETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPE 775 (789)
Q Consensus 731 ~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~ 775 (789)
.+++++.+|+++|.+.+.+++||+| +++++|+||++|+++.
T Consensus 283 ~~~~~l~~a~~~m~~~~~~~lpVv~----~~~lvGiit~~dil~~ 323 (326)
T PRK10892 283 RPGILAVDALNLMQSRHITSVLVAD----GDHLLGVLHMHDLLRA 323 (326)
T ss_pred CCCCCHHHHHHHHHHCCCcEEEEee----CCEEEEEEEhHHhHhc
Confidence 9999999999999999999999997 4689999999999875
No 26
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.53 E-value=4.4e-14 Score=154.56 Aligned_cols=147 Identities=13% Similarity=0.120 Sum_probs=125.2
Q ss_pred CchhHHHHHHHcCCCc---cccccccccc---ccceeecccCC--eEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCC
Q 003885 579 NQGVYDQIVKLKGLPY---LEAHAEPYMK---NLVASDVVSGP--LITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTP 650 (789)
Q Consensus 579 ~~~iy~~~l~~kg~p~---l~~~~~~~l~---~l~v~dvM~~~--vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~ 650 (789)
..++|...+..++... ...++...++ ..+|+|+|.++ ++++++++++.++.+.|.+++...+||+|++
T Consensus 164 ~dsL~~~~l~~~g~~~~~~~~~~~~~~l~~~~~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~---- 239 (321)
T PRK11543 164 GDALAMAVMQARGFNEEDFARSHPAGALGARLLNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQ---- 239 (321)
T ss_pred HHHHHHHHHHHcCCCHHHhccCCCCCHHHHHHHhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCC----
Confidence 4588888888888765 5666777788 89999999998 9999999999999999988888999999987
Q ss_pred CCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeee
Q 003885 651 APELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTV 730 (789)
Q Consensus 651 ~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV 730 (789)
++++|+|+.+|+...+..... ....+.++|++++.++
T Consensus 240 -g~~iG~vt~~dl~~~~~~~~~------------------------------------------~~~~v~~im~~~~~~v 276 (321)
T PRK11543 240 -QQVQGVFTDGDLRRWLVGGGA------------------------------------------LTTPVNEAMTRGGTTL 276 (321)
T ss_pred -CcEEEEecHHHHHHHHhCCCC------------------------------------------cCCcHHHhcCCCCEEE
Confidence 899999999999775532100 0113457888899999
Q ss_pred cCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcch
Q 003885 731 VETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPE 775 (789)
Q Consensus 731 ~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~ 775 (789)
.+++++.+|++.|.+.+.+++||||+ +++++|+||++|+++.
T Consensus 277 ~~~~~l~~a~~~m~~~~~~~lpVvd~---~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 277 QAQSRAIDAKEILMKRKITAAPVVDE---NGKLTGAINLQDFYQA 318 (321)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEcC---CCeEEEEEEHHHHHhc
Confidence 99999999999999999999999997 6799999999999864
No 27
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.50 E-value=2.3e-13 Score=160.27 Aligned_cols=182 Identities=19% Similarity=0.183 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHH
Q 003885 104 KWTLALLIGVLTGLAAVFCNFFVENIAGFKLLLINNLMLNDRHFMGFVANTSINLGLAILAAILCAYIAPAAAGSGIPEV 183 (789)
Q Consensus 104 ~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev 183 (789)
.+.+.+++|+++|+++.+|+..+.+.++++.. .+ .++.+.. ++.+++.+. +.++.|+..|+|.+.+
T Consensus 238 ~~~~~~~lGv~~G~~~~~f~~~~~~~~~~~~~--------~~--~~~~~~~---~~~gl~~g~-l~~~~p~~~g~G~~~i 303 (574)
T PRK01862 238 EVLLFVALGVLCGAAAPQFLRLLDASKNQFKR--------LP--VPLPVRL---ALGGLLVGV-ISVWVPEVWGNGYSVV 303 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------cC--CchhHHH---HHHHHHHHH-HHHHHHHHhcCCHHHH
Confidence 34578999999999999999998887654311 11 1111121 223344443 3456799999999999
Q ss_pred HHHHhCCCCCCccchhhHHHHHHhhhhhhhccccccCchhHHHHHHHHHHHhhccCccccchhhhhhcc-cCCh-hhhhh
Q 003885 184 KAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRY-FKND-RDRRD 261 (789)
Q Consensus 184 ~~~lng~~~~~~l~~~~l~~K~~~~i~sv~sG~svG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~-f~~~-~~~r~ 261 (789)
+..+++-. .-..-+..++.|++.+.+++++|.++|.++|++.+||++|+.+++ +++. +.+. .+.-.
T Consensus 304 ~~~~~~~~-~~~~l~~~~~~K~~~t~~t~g~G~~GG~f~P~l~iGa~~G~~~g~-----------~~~~~~~~~~~~~~~ 371 (574)
T PRK01862 304 NTILHAPW-TWQALVAVLVAKLIATAATAGSGAVGGVFTPTLFVGAVVGSLFGL-----------AMHALWPGHTSAPFA 371 (574)
T ss_pred HHHHcCCc-hHHHHHHHHHHHHHHHHHHHccCCCccchhhHHHHHHHHHHHHHH-----------HHHHhCCCcccchHH
Confidence 98887621 111123456899999999999999999999999999999999997 2221 1111 22234
Q ss_pred HHHhhhhhhhhhhccCcchhhhHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 003885 262 LITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRG 314 (789)
Q Consensus 262 lv~~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~ 314 (789)
++.+||||.+|+++|||+++++|++|++.+ ...+.+.+++++++.++.+.
T Consensus 372 ~a~vGmaa~~aa~~~aPlt~i~l~~Elt~~---~~~~~P~~ia~~~a~~v~~~ 421 (574)
T PRK01862 372 YAMVGMGAFLAGATQAPLMAILMIFEMTLS---YQVVLPLMVSCVVAYFTARA 421 (574)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHhCC---HhHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999754 34556666667666666553
No 28
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.50 E-value=4.5e-13 Score=151.04 Aligned_cols=183 Identities=19% Similarity=0.246 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHH
Q 003885 103 FKWTLALLIGVLTGLAAVFCNFFVENIAGFKLLLINNLMLNDRHFMGFVANTSINLGLAILAAILCAYIAPAAAGSGIPE 182 (789)
Q Consensus 103 ~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipe 182 (789)
..+.+.+++|+++|+++.+|++.+.+.+++.... +. .+++. ..+.+++.+.+. ++.|+..|.|.+.
T Consensus 219 ~~l~~~i~lGii~Gl~g~~f~~~~~~~~~~~~~~--------~~-~~~~~----~~lggli~g~l~-~~~p~~~G~G~~~ 284 (418)
T PRK01610 219 RDYALIISTGLLAGLCGPLLLTLMNASHRGFVSL--------KL-APPWQ----LALGGLIVGLLS-LFTPAVWGNGYSV 284 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--------cc-chhHH----HHHHHHHHHHHH-HHhhHHhCCcHHH
Confidence 3455789999999999999999888776543211 11 11211 233344444444 4459999999999
Q ss_pred HHHHHhCCCCCCccchhhHHHHHHhhhhhhhccccccCchhHHHHHHHHHHHhhccCccccchhhhhhcc-cCChhh-hh
Q 003885 183 VKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRY-FKNDRD-RR 260 (789)
Q Consensus 183 v~~~lng~~~~~~l~~~~l~~K~~~~i~sv~sG~svG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~-f~~~~~-~r 260 (789)
++..+++. ..-.+-.-.++.|++.+.+++++|.++|.+.|++.+||++|+.+++. +.. +.+... .-
T Consensus 285 i~~~~~~~-~~~~~l~~l~l~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~-----------~~~~~~~~~~~~~ 352 (418)
T PRK01610 285 VQSFLTAP-PLLMLIAGIFLCKLLAVLASSGSGAPGGVFTPTLFVGLAIGMLYGRS-----------LGLWLPDGEEITL 352 (418)
T ss_pred HHHHHcCC-hhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHH-----------HHHhCCCcccchH
Confidence 98888762 11111122358899999999999999999999999999999999972 221 112222 33
Q ss_pred hHHHhhhhhhhhhhccCcchhhhHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 003885 261 DLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRG 314 (789)
Q Consensus 261 ~lv~~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~ 314 (789)
.+..+||||.+|+++|||++++++++|++.++ ..+...+++|++++.+.+.
T Consensus 353 ~~a~vGmaA~laa~~~aPltaivl~~Eltg~~---~~~~p~~ia~~ia~~vs~~ 403 (418)
T PRK01610 353 LLGLTGMATLLAATTHAPIMSTLMICEMTGEY---QLLPGLLIACVIASVISRT 403 (418)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHhCCH---hHHHHHHHHHHHHHHHHHH
Confidence 46679999999999999999999999997652 2345556666666666553
No 29
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=1.8e-12 Score=120.19 Aligned_cols=119 Identities=15% Similarity=0.195 Sum_probs=94.3
Q ss_pred CCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhc
Q 003885 614 GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFA 693 (789)
Q Consensus 614 ~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~ 693 (789)
+++.++++++++.++.+.|.+++.+.+||+|++ ++++|+++++|+...+.++..... ..+..+
T Consensus 1 ~~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~-----~~~~Giv~~~dl~~~~~~~~~~~~----------~~~~~~-- 63 (120)
T cd04641 1 KNIATARPDTPLIDVLDMLVERRVSALPIVDEN-----GKVVDVYSRFDVINLAKEGAYNNL----------DLTVGE-- 63 (120)
T ss_pred CCcEEEcCCCCHHHHHHHHHHcCCCeeeEECCC-----CeEEEEEeHHHHHHHHhcCccccc----------cCCHHH--
Confidence 367899999999999999999999999999976 899999999999876543221000 000000
Q ss_pred cccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCc
Q 003885 694 KAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 773 (789)
Q Consensus 694 ~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl 773 (789)
.+..++.|..++.++++++++.+++++|.+.+.+++||+|+ +++++|+||++|++
T Consensus 64 ----------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~---~~~~~Givt~~di~ 118 (120)
T cd04641 64 ----------------------ALERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDE---NKRVEGIISLSDIL 118 (120)
T ss_pred ----------------------HHhhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECC---CCCEEEEEEHHHhh
Confidence 01123456667889999999999999999999999999997 68999999999997
Q ss_pred c
Q 003885 774 P 774 (789)
Q Consensus 774 ~ 774 (789)
+
T Consensus 119 ~ 119 (120)
T cd04641 119 Q 119 (120)
T ss_pred c
Confidence 6
No 30
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.42 E-value=4.5e-12 Score=141.54 Aligned_cols=153 Identities=21% Similarity=0.343 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHh-ccCCCCCCHHH
Q 003885 104 KWTLALLIGVLTGLAAVFCNFFVENIAGFKLLLINNLMLNDRHFMGFVANTSINLGLAILAAILCAYI-APAAAGSGIPE 182 (789)
Q Consensus 104 ~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~-~p~a~GsGipe 182 (789)
.+.+.+++|+++|+++.+|++.+.++++++.... .. .|+. +++.+++.+.+..+. .|...|.|.+.
T Consensus 199 ~l~~~i~~Gi~~gl~g~~f~~~~~~~~~~~~~~~-----~~----~~~~----~~iggl~~g~~~~~~~~~~~~G~g~~~ 265 (378)
T cd03682 199 LFVKVILAGIIFGLAGRLFAELLHFLKKLLKKRI-----KN----PYLR----PFVGGLLIILLVYLLGSRRYLGLGTPL 265 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----CC----cHHH----HHHHHHHHHHHHHHhcCCccccCCHHH
Confidence 3457899999999999999999998877653210 11 1221 233344444444333 34567999888
Q ss_pred HHH-HHhCCCCCCccchhhHHHHHHhhhhhhhccccccCchhHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhh
Q 003885 183 VKA-YLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRD 261 (789)
Q Consensus 183 v~~-~lng~~~~~~l~~~~l~~K~~~~i~sv~sG~svG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~ 261 (789)
++. ..++ ..+...++.|++.+.+++++|.+.|.+.|++.+||++|+.+++ +++. +.-.
T Consensus 266 i~~~~~~~-----~~~~~~~l~K~~~t~~s~g~G~~GG~f~P~l~iGa~~G~~~~~-----------~~~~-----~~~~ 324 (378)
T cd03682 266 IEDSFFGG-----TVYPYDWLLKLIFTVITLGAGFKGGEVTPLFFIGATLGNALAP-----------ILGL-----PVSL 324 (378)
T ss_pred HHHHHhcC-----CchHHHHHHHHHHHHHHHhcCCCCceechHHHHHHHHHHHHHH-----------HHCC-----CHHH
Confidence 877 4433 3446678999999999999999999999999999999999997 3321 2347
Q ss_pred HHHhhhhhhhhhhccCcchhhhHHHhHhh
Q 003885 262 LITCGAAAGVAGAFRAPVGGVLFALEEAA 290 (789)
Q Consensus 262 lv~~GaAAGvaaaF~APigGvLFalE~~~ 290 (789)
++.||+||.+++++|||+++++|++|++.
T Consensus 325 ~~~~Gmaa~laa~~raPlt~ivl~~Eltg 353 (378)
T cd03682 325 LAALGFVAVFAGATNTPLACIIMGIELFG 353 (378)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHhC
Confidence 89999999999999999999999999986
No 31
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.40 E-value=4.1e-13 Score=140.12 Aligned_cols=147 Identities=21% Similarity=0.285 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHHHHhhCchhHHHHHHHcCCCcccccccccccccceeeccc--CCeEEecCCCcHHHHHHHHhhcCCC
Q 003885 561 LPLVMLVLLISKTVADSFNQGVYDQIVKLKGLPYLEAHAEPYMKNLVASDVVS--GPLITFSGVEKVGNIMHALRLTRHN 638 (789)
Q Consensus 561 l~pimia~~ia~~v~~~~~~~iy~~~l~~kg~p~l~~~~~~~l~~l~v~dvM~--~~vvtv~~~~~V~~~~~~L~~~~~~ 638 (789)
-+|++-+.-=.+.|+...|+-+|+.+++. +-++|+|+|. .+...++++++|++-.+.-++++|+
T Consensus 157 ~lPvlstsYDTFTVAtmIN~Al~n~lIKk--------------dI~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~s 222 (432)
T COG4109 157 GLPVLSTSYDTFTVATMINKALSNQLIKK--------------DIITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHS 222 (432)
T ss_pred CCceEEecccceeHHHHHHHHHHHhhhhh--------------heeeHHHhccccccceeccccccHHHHHHHHHHcCCC
Confidence 35555554445566666688888888763 2368999999 4788999999999999999999999
Q ss_pred eeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhccccCCCCCcccccccchhhhhhccc
Q 003885 639 GFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVD 718 (789)
Q Consensus 639 ~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~d 718 (789)
.|||+|+. .+++|+|+-+|+..... ...
T Consensus 223 RfPVvn~~-----~kvvGvVt~rDv~~~~~-----------------------------------------------~t~ 250 (432)
T COG4109 223 RFPVVNRS-----MKVVGVVTMRDVLDKKP-----------------------------------------------STT 250 (432)
T ss_pred ccceeccc-----ceEEEEEEehhhhcCCC-----------------------------------------------Ccc
Confidence 99999987 89999999999843211 123
Q ss_pred ccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcchh
Q 003885 719 LHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEH 776 (789)
Q Consensus 719 L~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~~ 776 (789)
+..+|+++|.+|.+.+|++.+.+.|--.++..+||+|+ +++++|||||+|+++..
T Consensus 251 ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~---n~~llGiitR~dvlk~l 305 (432)
T COG4109 251 IEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDS---NNTLLGIITRQDVLKSL 305 (432)
T ss_pred HHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcC---CceEEEEEEHHHHHHHH
Confidence 45689999999999999999999999999999999998 89999999999999754
No 32
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=99.39 E-value=4.4e-12 Score=142.94 Aligned_cols=185 Identities=20% Similarity=0.178 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHH
Q 003885 103 FKWTLALLIGVLTGLAAVFCNFFVENIAGFKLLLINNLMLNDRHFMGFVANTSINLGLAILAAILCAYIAPAAAGSGIPE 182 (789)
Q Consensus 103 ~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipe 182 (789)
..+...+++|+++|+++.+|+..++++.+++.... ... .++.. ++.+++.+.+. ++.|+..|+|-+.
T Consensus 205 ~~l~~~illGv~~G~~g~~f~~~~~~~~~~~~~~~----~~~----~~~~~----~l~gl~~~~~~-~~~p~~~g~G~~~ 271 (402)
T cd01031 205 KSYWLLLLLGIIAGLLGYLFNRSLLKSQDLYRKLK----KLP----RELRV----LLPGLLIGPLG-LLLPEALGGGHGL 271 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cCC----hhHHH----HHHHHHHHHHH-HHHHHHhCCHHHH
Confidence 34557899999999999999999888876542210 111 12211 12333333333 4579999999877
Q ss_pred HHHHHhCCCCCCccchhhHHHHHHhhhhhhhccccccCchhHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhH
Q 003885 183 VKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDL 262 (789)
Q Consensus 183 v~~~lng~~~~~~l~~~~l~~K~~~~i~sv~sG~svG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~l 262 (789)
++...++. .+-..-...++.|++.+.+++++|.+.|...|.+.+||++|..+++. ++. +++ .+..+...+
T Consensus 272 i~~~~~~~-~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~g~~----~~~---~~~--~~~~~~~~~ 341 (402)
T cd01031 272 ILSLAGGN-FSISLLLLIFVLRFIFTMLSYGSGAPGGIFAPMLALGALLGLLFGTI----LVQ---LGP--IPISAPATF 341 (402)
T ss_pred HHHHHcCC-chHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHH----HHH---hcC--cccccHHHH
Confidence 87777652 22112234568999999999999999999999999999999999872 110 111 134567889
Q ss_pred HHhhhhhhhhhhccCcchhhhHHHhHhhhhhhhhhHHHHHHHHHHHHHHHH
Q 003885 263 ITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLR 313 (789)
Q Consensus 263 v~~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~ 313 (789)
+.+|+||.+++++|+|++++++++|.+.+ ...+.+.++++++|..+.+
T Consensus 342 a~~G~aa~~a~~~~aPlta~vl~~Eltg~---~~~l~p~~ia~~ia~~v~~ 389 (402)
T cd01031 342 AIAGMAAFFAAVVRAPITAIILVTEMTGN---FNLLLPLMVVCLVAYLVAD 389 (402)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhCC---HhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998764 2445555556655555544
No 33
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.38 E-value=1.6e-12 Score=121.47 Aligned_cols=121 Identities=19% Similarity=0.322 Sum_probs=102.4
Q ss_pred cccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCccc
Q 003885 604 KNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDI 683 (789)
Q Consensus 604 ~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~ 683 (789)
..++++++|+.|++.+++++++.+++++|++.+++++||+++ ++++|-|+.+++.+++.+.. +
T Consensus 63 ~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~------~k~VGsItE~~iv~~~le~~---e-------- 125 (187)
T COG3620 63 TRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE------DKVVGSITENDIVRALLEGM---E-------- 125 (187)
T ss_pred ceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC------CeeeeeecHHHHHHHHhccc---c--------
Confidence 568999999999999999999999999999999999999998 69999999999988765421 0
Q ss_pred ccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCE
Q 003885 684 MRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPI 763 (789)
Q Consensus 684 ~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~v 763 (789)
.++ ...++++|..+.++|+++.++..+.+++..+. .+.|++ +|++
T Consensus 126 ------------------~i~-----------~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~~--AVlV~e----~G~~ 170 (187)
T COG3620 126 ------------------SIR-----------SLRVREVMGEPFPTVSPDESLNVISQLLEEHP--AVLVVE----NGKV 170 (187)
T ss_pred ------------------chh-----------hhhHHHHhcCCCCcCCCCCCHHHHHHHHhhCC--eEEEEe----CCce
Confidence 001 23457788888899999999999999988764 477775 6899
Q ss_pred EEEEecccCcchh
Q 003885 764 VGILTRHDFMPEH 776 (789)
Q Consensus 764 vGIITr~DLl~~~ 776 (789)
+||||+.|+++..
T Consensus 171 vGIITk~DI~k~~ 183 (187)
T COG3620 171 VGIITKADIMKLL 183 (187)
T ss_pred EEEEeHHHHHHHH
Confidence 9999999999754
No 34
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.37 E-value=5.9e-12 Score=115.69 Aligned_cols=111 Identities=13% Similarity=0.109 Sum_probs=93.5
Q ss_pred eEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhccc
Q 003885 616 LITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKA 695 (789)
Q Consensus 616 vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 695 (789)
+.++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+|+...+.+....
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-----g~~~G~vt~~dl~~~~~~~~~~---------------------- 55 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPH-----GKLAGVLTKTDVVRQMGRCGGP---------------------- 55 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECCC-----CCEEEEEehHHHHHHHhhcCCC----------------------
Confidence 5688999999999999999999999999987 8999999999997654321000
Q ss_pred cCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 696 GSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 696 ~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
.....+.++|++++.++.+++++.++++.|.+.+.+++||+|+ +++++|+||++|+++
T Consensus 56 ------------------~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 56 ------------------GCTAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDE---NARPLGVLNARDALK 113 (114)
T ss_pred ------------------cccCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECC---CCcEEEEEEhHhhcc
Confidence 0012345678889999999999999999999999999999997 789999999999975
No 35
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.35 E-value=3e-12 Score=145.55 Aligned_cols=122 Identities=20% Similarity=0.255 Sum_probs=107.1
Q ss_pred ccccccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCC
Q 003885 601 PYMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTG 680 (789)
Q Consensus 601 ~~l~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~ 680 (789)
..++.+++.++|.+++++++++++++++.+.|.+++++.+||+|++ ++++|+|+.+|+... + .
T Consensus 84 ~~l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~-----gklvGIVT~rDL~~~--~-----~----- 146 (479)
T PRK07807 84 EVVAWVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEE-----GRPVGVVTEADCAGV--D-----R----- 146 (479)
T ss_pred HHHhhcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCC-----CeEEEEEeHHHHhcC--c-----c-----
Confidence 4577889999999999999999999999999999999999999987 899999999998321 0 0
Q ss_pred cccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCC
Q 003885 681 SDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGR 760 (789)
Q Consensus 681 ~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~ 760 (789)
..++.++|++++.++++++++.+|+++|.+.+.+++||+|+ +
T Consensus 147 -----------------------------------~~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~---~ 188 (479)
T PRK07807 147 -----------------------------------FTQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDA---D 188 (479)
T ss_pred -----------------------------------CCCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcC---C
Confidence 02356788899999999999999999999999999999997 7
Q ss_pred CCEEEEEecccCcchhh
Q 003885 761 PPIVGILTRHDFMPEHV 777 (789)
Q Consensus 761 ~~vvGIITr~DLl~~~~ 777 (789)
++++|+||++||++...
T Consensus 189 g~lvGIIT~~DIl~~~~ 205 (479)
T PRK07807 189 GRLVGVLTRTGALRATI 205 (479)
T ss_pred CeEEEEEEHHHHHHHhh
Confidence 89999999999998544
No 36
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.34 E-value=8.4e-12 Score=114.15 Aligned_cols=109 Identities=15% Similarity=0.165 Sum_probs=91.2
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
++.++++++++.++.+.|.+++++.+||+|++ ++++|+|+..|+.....+.+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~-----~~~~G~v~~~dl~~~~~~~~----------------------- 53 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEE-----NKVLGQVTLSDLLEIGPNDY----------------------- 53 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-----CCEEEEEEHHHHHhhccccc-----------------------
Confidence 46788999999999999998889999999986 89999999999965311100
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
....+.++|..++.++++++++.+|+++|.+.+.+++||+|+ +++++|+||++|+++
T Consensus 54 --------------------~~~~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~---~~~~~Giit~~di~~ 110 (111)
T cd04603 54 --------------------ETLKVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDK---EGKLVGTIYERELLR 110 (111)
T ss_pred --------------------cccChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcC---CCeEEEEEEhHHhhc
Confidence 001245577778889999999999999999999999999997 789999999999975
No 37
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.34 E-value=7.8e-12 Score=112.18 Aligned_cols=95 Identities=20% Similarity=0.259 Sum_probs=84.0
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
.++++++++++.++.+.|.+++++.+||+|++ +++++|+|+.+|+...+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~----~~~~~Givt~~Dl~~~~--------------------------- 50 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSR----KQQFVGMLTITDFILIL--------------------------- 50 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCC----CCEEEEEEEHHHHhhhe---------------------------
Confidence 47889999999999999999999999999963 17899999999995321
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCC-CCEEEEEecccCc
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGR-PPIVGILTRHDFM 773 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~-~~vvGIITr~DLl 773 (789)
. +.++.+++++.+|+++|.+.+.+++||+|+ + |+++|+||++|++
T Consensus 51 -----------------------------~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~~~~~~giit~~d~~ 96 (98)
T cd04618 51 -----------------------------R--LVSIHPERSLFDAALLLLKNKIHRLPVIDP---STGTGLYILTSRRIL 96 (98)
T ss_pred -----------------------------e--eEEeCCCCcHHHHHHHHHHCCCCEeeEEEC---CCCCceEEeehhhhh
Confidence 0 568999999999999999999999999997 5 8999999999997
Q ss_pred c
Q 003885 774 P 774 (789)
Q Consensus 774 ~ 774 (789)
.
T Consensus 97 ~ 97 (98)
T cd04618 97 K 97 (98)
T ss_pred c
Confidence 5
No 38
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.34 E-value=9.4e-12 Score=115.63 Aligned_cols=123 Identities=21% Similarity=0.246 Sum_probs=97.8
Q ss_pred cCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhh
Q 003885 613 SGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDF 692 (789)
Q Consensus 613 ~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~ 692 (789)
++++.++++++++.++.+.|.+.+++.+||+|++ ++++|+|+.++|...+........ .++
T Consensus 1 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----~~~~Giv~~~~l~~~~~~~~~~~~--------------~~~ 61 (124)
T cd04600 1 SRDVVTVTPDTSLEEAWALLRRHRIKALPVVDGD-----RRLVGIVTQRDLLRHARPDGRRPL--------------RGR 61 (124)
T ss_pred CCCcEEeCCCCCHHHHHHHHHHcCCceeeEECCC-----CCEEEEEEHHHHHhhhcccccchh--------------hhh
Confidence 3577899999999999999999999999999986 899999999999765543110000 000
Q ss_pred ccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccC
Q 003885 693 AKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDF 772 (789)
Q Consensus 693 ~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DL 772 (789)
.+ ......++.++|++.+.++++++++.+++++|.+.+.+.+||+|+ +++++|+||++|+
T Consensus 62 ~~-----------------~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~---~g~~~Gvit~~di 121 (124)
T cd04600 62 LR-----------------GRDKPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDE---DRRLVGIVTQTDL 121 (124)
T ss_pred hh-----------------cccccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcC---CCCEEEEEEhHHh
Confidence 00 001124567788899999999999999999999999999999997 7899999999999
Q ss_pred cc
Q 003885 773 MP 774 (789)
Q Consensus 773 l~ 774 (789)
++
T Consensus 122 ~~ 123 (124)
T cd04600 122 IA 123 (124)
T ss_pred hc
Confidence 86
No 39
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.33 E-value=6.8e-12 Score=141.07 Aligned_cols=127 Identities=20% Similarity=0.214 Sum_probs=108.6
Q ss_pred ccccceeecccC--CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCC
Q 003885 603 MKNLVASDVVSG--PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTG 680 (789)
Q Consensus 603 l~~l~v~dvM~~--~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~ 680 (789)
+++.+|+|+|++ ++++++.+++++++.+.+.+++|+.+||++++. ++++|+|+.+|++..+.++
T Consensus 188 l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~----d~ivGiv~~kDll~~~~~~---------- 253 (408)
T TIGR03520 188 FGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETI----DNITGVLYIKDLLPHLNKK---------- 253 (408)
T ss_pred cCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCC----CceEEEEEHHHHHhHhccC----------
Confidence 568899999997 899999999999999999999999999998742 6899999999997543210
Q ss_pred cccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCC
Q 003885 681 SDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGR 760 (789)
Q Consensus 681 ~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~ 760 (789)
..+++++|. +|++|++++++.++++.|++.+.+..+|+|+ .
T Consensus 254 -----------------------------------~~~l~~~~~-~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE---~ 294 (408)
T TIGR03520 254 -----------------------------------NFDWQSLLR-EPYFVPENKKLDDLLRDFQEKKNHLAIVVDE---Y 294 (408)
T ss_pred -----------------------------------CCCHHHHcC-CCeEeCCCCcHHHHHHHHHhcCceEEEEEcC---C
Confidence 023455664 6889999999999999999999999999998 7
Q ss_pred CCEEEEEecccCcchhhhccCc
Q 003885 761 PPIVGILTRHDFMPEHVLGLYP 782 (789)
Q Consensus 761 ~~vvGIITr~DLl~~~~~~~~~ 782 (789)
|.++|+||.+|++++...++..
T Consensus 295 G~~~GiVT~eDileeivgei~d 316 (408)
T TIGR03520 295 GGTSGLVTLEDIIEEIVGDISD 316 (408)
T ss_pred CCEEEEEEHHHHHHHHhCCCCC
Confidence 8999999999999998776654
No 40
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.32 E-value=1.9e-11 Score=113.02 Aligned_cols=114 Identities=23% Similarity=0.208 Sum_probs=91.1
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
++.++++++++.++.+.|..++.+.+||+|++ ++++|+|+..++......+.-.
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-----~~~~Givt~~dl~~~~~~~~~~--------------------- 55 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDED-----GDLVGVVSRKDLLKASIGGADL--------------------- 55 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----CCEEEEEEHHHHHHHHHcCCCc---------------------
Confidence 57889999999999999988888999999986 7999999999997765321100
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccC--CCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccC
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNT--SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDF 772 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DL 772 (789)
....+.++|.+ .+.++++++++.+++++|.+.+.+++||+|+..+.++++|+||++|+
T Consensus 56 --------------------~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l 115 (118)
T cd04617 56 --------------------QKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNI 115 (118)
T ss_pred --------------------cCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhhe
Confidence 01123446654 57799999999999999999999999999971001689999999999
Q ss_pred cc
Q 003885 773 MP 774 (789)
Q Consensus 773 l~ 774 (789)
++
T Consensus 116 ~~ 117 (118)
T cd04617 116 TK 117 (118)
T ss_pred ec
Confidence 75
No 41
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.31 E-value=1.8e-11 Score=112.33 Aligned_cols=111 Identities=22% Similarity=0.266 Sum_probs=93.3
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
++.++++++++.++.+.|.+.+++.+||+|++ ++++|+++.+||...+.+....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-----~~~~G~v~~~dl~~~~~~~~~~--------------------- 55 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRD-----GGVVGIITLPDLLRALEADEAG--------------------- 55 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCC-----CCEEEEEEHHHHHHHHhccccc---------------------
Confidence 56788999999999999999899999999986 8999999999998765431100
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCC--CCEEEEEecccC
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGR--PPIVGILTRHDF 772 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~--~~vvGIITr~DL 772 (789)
....+.++|.+++.++.+++++.+++++|.+.+.+++||+|+ + ++++|+||++|+
T Consensus 56 --------------------~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~---~~~~~~~Gvit~~di 112 (115)
T cd04593 56 --------------------EPSAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDR---GNPGQVLGLLTRENV 112 (115)
T ss_pred --------------------ccccHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeC---CCCCeEEEEEEhHHh
Confidence 011245577888999999999999999999999999999987 4 789999999999
Q ss_pred cc
Q 003885 773 MP 774 (789)
Q Consensus 773 l~ 774 (789)
++
T Consensus 113 ~~ 114 (115)
T cd04593 113 LL 114 (115)
T ss_pred hc
Confidence 86
No 42
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.30 E-value=1.2e-11 Score=132.82 Aligned_cols=130 Identities=16% Similarity=0.276 Sum_probs=107.7
Q ss_pred ccccceeecccC--CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCC
Q 003885 603 MKNLVASDVVSG--PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTG 680 (789)
Q Consensus 603 l~~l~v~dvM~~--~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~ 680 (789)
++..+|+|+|++ ++++++.+++++++.+.+.+++|+.|||++++ .++++|+|+.+|++..+.... .
T Consensus 64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~----~d~iiGiv~~kDll~~~~~~~----~---- 131 (292)
T PRK15094 64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED----KDHIEGILMAKDLLPFMRSDA----E---- 131 (292)
T ss_pred cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCC----CCcEEEEEEHHHHHhHhhccC----C----
Confidence 566799999998 79999999999999999999999999999864 268999999999975442100 0
Q ss_pred cccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCC
Q 003885 681 SDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGR 760 (789)
Q Consensus 681 ~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~ 760 (789)
..++.++|. ++.+|++++++.++++.|++.+.+.+||+|+ .
T Consensus 132 -----------------------------------~~~l~~l~r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe---~ 172 (292)
T PRK15094 132 -----------------------------------AFSMDKVLR-QAVVVPESKRVDRMLKEFRSQRYHMAIVIDE---F 172 (292)
T ss_pred -----------------------------------cCCHHHHcC-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeC---C
Confidence 012345664 4568999999999999999999999999998 7
Q ss_pred CCEEEEEecccCcchhhhccCcc
Q 003885 761 PPIVGILTRHDFMPEHVLGLYPH 783 (789)
Q Consensus 761 ~~vvGIITr~DLl~~~~~~~~~~ 783 (789)
|.++|+||++|++++...++...
T Consensus 173 G~viGiVTleDIle~ivGei~de 195 (292)
T PRK15094 173 GGVSGLVTIEDILELIVGEIEDE 195 (292)
T ss_pred CCEEEEeEHHHHHHHHhCCCccc
Confidence 88999999999999888776543
No 43
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.29 E-value=1.5e-11 Score=111.57 Aligned_cols=105 Identities=22% Similarity=0.292 Sum_probs=91.2
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
++.+++++++++++.+.+.+++++.+||+|++ ++++|+|+..++.....
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-----~~~~G~v~~~~l~~~~~-------------------------- 51 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEK-----NKVVGIVTSKDVAGKDP-------------------------- 51 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCC-----CeEEEEecHHHHhcccc--------------------------
Confidence 57889999999999999998888999999986 89999999999953110
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
..++.++|++.+.++++++++.+++++|.+.+.+.+||+|+ +++++|+||++|+++
T Consensus 52 ---------------------~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~~~~G~it~~di~~ 107 (108)
T cd04596 52 ---------------------DTTIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDD---NKKLLGIISRQDVLK 107 (108)
T ss_pred ---------------------cccHHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcC---CCCEEEEEEHHHhhc
Confidence 01345677778899999999999999999999999999997 789999999999975
No 44
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.29 E-value=3e-11 Score=109.75 Aligned_cols=108 Identities=21% Similarity=0.273 Sum_probs=92.9
Q ss_pred CCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhc
Q 003885 614 GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFA 693 (789)
Q Consensus 614 ~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~ 693 (789)
+++.++++++++.++.+.+.+++++.+||+|++ ++++|+++.++++..+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-----~~~~G~v~~~~l~~~~~~~~---------------------- 54 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDED-----GRLVGIVTSWDISKAVARDK---------------------- 54 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCC-----CcEEEEEeHHHHHHHHhhCc----------------------
Confidence 567889999999999999999899999999986 89999999999976543210
Q ss_pred cccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCc
Q 003885 694 KAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 773 (789)
Q Consensus 694 ~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl 773 (789)
.++.++|++++.++.+++++.++++.|.+.+.+.+||+++ +++++|+||++|+.
T Consensus 55 -----------------------~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~~~~G~v~~~di~ 108 (110)
T cd04605 55 -----------------------KSVEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDA---ENRVIGIITSEDIS 108 (110)
T ss_pred -----------------------cCHHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECC---CCcEEEEEEHHHhh
Confidence 1234567778889999999999999999999999999997 78999999999996
Q ss_pred c
Q 003885 774 P 774 (789)
Q Consensus 774 ~ 774 (789)
+
T Consensus 109 ~ 109 (110)
T cd04605 109 K 109 (110)
T ss_pred h
Confidence 5
No 45
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.28 E-value=1.3e-11 Score=115.62 Aligned_cols=113 Identities=18% Similarity=0.191 Sum_probs=93.4
Q ss_pred CCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhc
Q 003885 614 GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFA 693 (789)
Q Consensus 614 ~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~ 693 (789)
+++.++++++++.++.+.|+++++..+||+|++ ++++|+|+.++++..+..+..
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~-----~~~~Gii~~~dl~~~~~~~~~--------------------- 55 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDES-----GKILGMVTLGNLLSSLSSGKV--------------------- 55 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----CCEEEEEEHHHHHHHHHHhcc---------------------
Confidence 467889999999999999999999999999986 899999999999865543110
Q ss_pred cccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHH---------HcCCCeEEEeeCCCCCCCEE
Q 003885 694 KAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFR---------QLALRHLCVVPKTPGRPPIV 764 (789)
Q Consensus 694 ~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~---------~~glr~LpVVd~~~~~~~vv 764 (789)
+....+.++|++++.++.+++++.++.+++. +.+.+++||+|+ +|+++
T Consensus 56 --------------------~~~~~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~ 112 (124)
T cd04608 56 --------------------QPSDPVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEK---QEKPI 112 (124)
T ss_pred --------------------CCCCcHHHHhhccceecCCCCCHHHHHhhcccCCceEEEecccccccccccc---ccceE
Confidence 0113467789999999999999999999653 236789999987 78999
Q ss_pred EEEecccCcch
Q 003885 765 GILTRHDFMPE 775 (789)
Q Consensus 765 GIITr~DLl~~ 775 (789)
||||+.|++++
T Consensus 113 Givt~~Dl~~~ 123 (124)
T cd04608 113 GIVTKIDLLSY 123 (124)
T ss_pred EEEehhHhhhh
Confidence 99999999874
No 46
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=3e-11 Score=109.90 Aligned_cols=109 Identities=23% Similarity=0.245 Sum_probs=92.7
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
++.+++++++++++.+.+.+.+++.+||+|++ ++++|+|+..++...+.....
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~-----~~~~G~v~~~~l~~~~~~~~~---------------------- 54 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGD-----GHLVGLLTRDDLIRALAEGGP---------------------- 54 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCC-----CcEEEEeeHHHHHHHHHhcCC----------------------
Confidence 56788999999999999988889999999986 899999999999776542100
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
..++.++|++++.++.+++++.++++.|.+.+.+++||+|+ +++++|+||++|+.+
T Consensus 55 ---------------------~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~~~~G~it~~dl~~ 110 (111)
T cd04639 55 ---------------------DAPVRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDG---SGRLVGLVTLENVGE 110 (111)
T ss_pred ---------------------CCcHHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcC---CCCEEEEEEHHHhhc
Confidence 01345677788889999999999999999999999999987 689999999999975
No 47
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.27 E-value=1.7e-11 Score=116.20 Aligned_cols=134 Identities=22% Similarity=0.258 Sum_probs=97.3
Q ss_pred cCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhh
Q 003885 613 SGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDF 692 (789)
Q Consensus 613 ~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~ 692 (789)
++++.++++++++.++.+.|.+++++.+||+|++ ++++|+|++.|+......+...... .+.+.
T Consensus 1 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~-----~~~~Gvi~~~dl~~~~~~~~~~~~~-----------~~~~~ 64 (135)
T cd04586 1 TTDVVTVSPETSVAEAARLMLDNHISGLPVVDDD-----GRLVGIVSEGDLLRRAELGTERRRA-----------RWLDL 64 (135)
T ss_pred CCCCEEeCCCCCHHHHHHHHHHcCCCCceEECCC-----CCEEEEeeHHHHHHHhcccCcchhh-----------hHHHH
Confidence 3567889999999999999999999999999986 8999999999998655432100000 00000
Q ss_pred ccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccC
Q 003885 693 AKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDF 772 (789)
Q Consensus 693 ~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DL 772 (789)
... .++.. .........++.++|+++++++.+++++.++++.|++.+.+++||+| +|+++|+||++|+
T Consensus 65 ~~~-------~~~~~-~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd----~g~~~Gvit~~di 132 (135)
T cd04586 65 LAG-------AEELA-AAFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR----GGRLVGIVSRADL 132 (135)
T ss_pred hcc-------hHHHH-HHHHHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec----CCEEEEEEEhHhh
Confidence 000 00000 00000112467788999999999999999999999999999999998 4789999999999
Q ss_pred cc
Q 003885 773 MP 774 (789)
Q Consensus 773 l~ 774 (789)
++
T Consensus 133 ~~ 134 (135)
T cd04586 133 LR 134 (135)
T ss_pred hc
Confidence 75
No 48
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=3.6e-11 Score=111.32 Aligned_cols=120 Identities=26% Similarity=0.349 Sum_probs=96.4
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
++.++.+++++.++.+.|.+.+++.+||+|++ ++++|+++.++++..+........ .+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----~~~~G~v~~~~l~~~~~~~~~~~~--------------~~~~- 61 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNED-----GKLVGLLTQRDLLRAALSSLSDNG--------------EESL- 61 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCC-----CCEEEEEEHHHHHHHhcccccccc--------------cccc-
Confidence 56789999999999999999999999999986 899999999999876543110000 0000
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
+.....++.++|++++.++.+++++.++++.|++.+.+++||+|+ +++++|+||++|+++
T Consensus 62 -----------------~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~~~~Gvit~~dl~~ 121 (122)
T cd04803 62 -----------------TKERDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDD---KGTLVGIITRSDFLR 121 (122)
T ss_pred -----------------ccccCcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcC---CCCEEEEEEHHHhhc
Confidence 001234567788889999999999999999999999999999997 689999999999985
No 49
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.26 E-value=5.3e-11 Score=107.70 Aligned_cols=107 Identities=21% Similarity=0.238 Sum_probs=91.5
Q ss_pred CCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhc
Q 003885 614 GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFA 693 (789)
Q Consensus 614 ~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~ 693 (789)
+++.++++++++.++.+.|.+.++..+||+|++ ++++|+++..|+......
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-----~~~~G~v~~~dl~~~~~~------------------------ 52 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKD-----NKLLGIVSLESLEQAYKE------------------------ 52 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCC-----CcEEEEEEHHHHHHHhhc------------------------
Confidence 356788999999999999998899999999986 899999999999654321
Q ss_pred cccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCc
Q 003885 694 KAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 773 (789)
Q Consensus 694 ~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl 773 (789)
..++.++|.+.+.++.+++++.++.+.|.+.+.+++||+|+ +++++|+||++|++
T Consensus 53 ----------------------~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~---~g~~~Gvit~~~l~ 107 (109)
T cd04583 53 ----------------------AKSLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDE---DGKLVGLITRSSLV 107 (109)
T ss_pred ----------------------CCcHhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECC---CCeEEEEEehHHhh
Confidence 01234567778889999999999999999999999999997 78999999999997
Q ss_pred c
Q 003885 774 P 774 (789)
Q Consensus 774 ~ 774 (789)
+
T Consensus 108 ~ 108 (109)
T cd04583 108 D 108 (109)
T ss_pred c
Confidence 5
No 50
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.26 E-value=5.8e-11 Score=108.79 Aligned_cols=109 Identities=18% Similarity=0.266 Sum_probs=88.4
Q ss_pred CeEEecCCCcHHHHHHHHhhcC-CCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhc
Q 003885 615 PLITFSGVEKVGNIMHALRLTR-HNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFA 693 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~-~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~ 693 (789)
++.++++++++.++.+.|.+.+ ...+||+|++ ++++|+|+.+||+....+...
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~-----~~~~G~v~~~dl~~~~~~~~~--------------------- 55 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNE-----GRYVGIISLADLRAIPTSQWA--------------------- 55 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCC-----CcEEEEEEHHHHHHHHHhhcc---------------------
Confidence 5678999999999999887664 7889999986 899999999999765432100
Q ss_pred cccCCCCCcccccccchhhhhhcccccccccC--CCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEeccc
Q 003885 694 KAGSGKGVKLEDLDIKEEEMEMFVDLHPITNT--SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHD 771 (789)
Q Consensus 694 ~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~D 771 (789)
...+.++|++ .+.++.+++++.++++.|++.+.+++||+|+ +++++|+||++|
T Consensus 56 ----------------------~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~---~~~~~Gvl~~~d 110 (114)
T cd04801 56 ----------------------QTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVED---SGQVIGLITEAD 110 (114)
T ss_pred ----------------------ccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcC---CCcEEEEEeccc
Confidence 0123445543 2568999999999999999999999999997 689999999999
Q ss_pred Ccc
Q 003885 772 FMP 774 (789)
Q Consensus 772 Ll~ 774 (789)
+++
T Consensus 111 i~~ 113 (114)
T cd04801 111 LLR 113 (114)
T ss_pred eec
Confidence 975
No 51
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=6e-11 Score=108.13 Aligned_cols=111 Identities=21% Similarity=0.260 Sum_probs=93.7
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
++.+++++++++++.+.+.+.+++.+||+|++ ++++|+|+.+|++..+.....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-----~~~~G~v~~~~l~~~~~~~~~---------------------- 54 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPD-----ERPIGIVTERDIVRAVAAGID---------------------- 54 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-----CCEEEEeeHHHHHHHHhccCC----------------------
Confidence 56788999999999999998899999999987 899999999999776543100
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
....+.++|++++.++.+++++.++++.|.+.+...+||+|+ +++++|+||++|+++
T Consensus 55 --------------------~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~---~g~~~Gilt~~dl~~ 111 (112)
T cd04624 55 --------------------LDTPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDK---GGELVGVISIRDLVR 111 (112)
T ss_pred --------------------CccCHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcC---CCcEEEEEEHHHhcc
Confidence 012345678888999999999999999999999999999997 689999999999986
Q ss_pred h
Q 003885 775 E 775 (789)
Q Consensus 775 ~ 775 (789)
+
T Consensus 112 ~ 112 (112)
T cd04624 112 E 112 (112)
T ss_pred C
Confidence 3
No 52
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.26 E-value=6e-11 Score=108.47 Aligned_cols=109 Identities=19% Similarity=0.209 Sum_probs=91.9
Q ss_pred eEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhccc
Q 003885 616 LITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKA 695 (789)
Q Consensus 616 vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 695 (789)
..++++++++.++.+.|.+.++..+||+|++ ++++|+++.+|+...+.+..-
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-----~~~~G~v~~~dl~~~~~~~~~----------------------- 55 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVDEN-----GRLLGTVTDGDIRRALLKGLS----------------------- 55 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEECCC-----CCEEEEEEcHHHHHHHhcCCC-----------------------
Confidence 4678999999999999998888899999986 899999999999765532110
Q ss_pred cCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 696 GSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 696 ~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
....+.++|++.+.++++++++.+++++|++.+.+++||+|+ +++++|+||++|++.
T Consensus 56 -------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~~~~Gvit~~di~~ 112 (113)
T cd04607 56 -------------------LDDPVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDE---EGRVVGLATLDDLLS 112 (113)
T ss_pred -------------------cCCCHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECC---CCCEEEEEEhHHhcc
Confidence 012345677788889999999999999999999999999997 789999999999975
No 53
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.25 E-value=6.2e-11 Score=107.84 Aligned_cols=111 Identities=19% Similarity=0.230 Sum_probs=92.7
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
++.++++++++.++.+.+.+.+++.+||+|++ ++++|+++.+|+...+......
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~-----~~~~Giv~~~~l~~~~~~~~~~--------------------- 55 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDG-----GRLVGIFSERDIVRKVALRGAS--------------------- 55 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCC-----CCEEEEEehHHHHHHHhhcCCC---------------------
Confidence 56788999999999999999999999999986 7999999999998765431100
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
....+++++|++++.++.+++++.+++++|.+.+.+++||+++ ++++|+||++|+++
T Consensus 56 -------------------~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~----~~~~Gvit~~di~~ 112 (113)
T cd04623 56 -------------------ALDTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG----GKLVGIVSIGDVVK 112 (113)
T ss_pred -------------------ccccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC----CEEEEEEEHHHhhc
Confidence 0012356678788899999999999999999999999999984 68999999999975
No 54
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.25 E-value=6e-11 Score=106.98 Aligned_cols=104 Identities=15% Similarity=0.080 Sum_probs=89.0
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
++.++++++++.++.+.|.++++..+||+|++ ++++|+++..|+......
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~-----g~~~Giv~~~dl~~~~~~------------------------- 51 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDAD-----GQPLGFVTRREAARASGG------------------------- 51 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCC-----CCEEEEEeHHHHHHhccc-------------------------
Confidence 56788999999999999988888999999876 899999999999643110
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
.+.++|++.+.++.+++++.+++++|.+.+...+||+|+ +++++|+||++|+++
T Consensus 52 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 52 -----------------------CCGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDE---DGRYVGEVTQRSIAD 105 (106)
T ss_pred -----------------------chhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECC---CCcEEEEEEHHHhhc
Confidence 123466667778999999999999999999999999997 789999999999976
No 55
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.24 E-value=7.7e-11 Score=107.12 Aligned_cols=108 Identities=20% Similarity=0.277 Sum_probs=92.1
Q ss_pred CCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhc
Q 003885 614 GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFA 693 (789)
Q Consensus 614 ~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~ 693 (789)
+++.++++++++.++.+.+.+.+++.+||+|+ ++++|+++.+|+...+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~------~~~~G~v~~~dl~~~~~~~~---------------------- 53 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG------GRVVGIISRRDVEKALRHGL---------------------- 53 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC------CEEEEEEEHHHHHHHHhccc----------------------
Confidence 46789999999999999999888999999997 68999999999977553211
Q ss_pred cccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCc
Q 003885 694 KAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 773 (789)
Q Consensus 694 ~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl 773 (789)
....+.++|++.+.++.+++++.+++++|.+.+.+++||+| +++++|+||++|++
T Consensus 54 ---------------------~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~----~~~~~Gvvt~~di~ 108 (110)
T cd04595 54 ---------------------GHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE----DGRLVGIVTRTDLL 108 (110)
T ss_pred ---------------------ccCcHHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe----CCEEEEEEEhHHhh
Confidence 01234567888899999999999999999999999999998 46899999999997
Q ss_pred c
Q 003885 774 P 774 (789)
Q Consensus 774 ~ 774 (789)
+
T Consensus 109 ~ 109 (110)
T cd04595 109 R 109 (110)
T ss_pred c
Confidence 5
No 56
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.24 E-value=4.9e-11 Score=106.43 Aligned_cols=95 Identities=15% Similarity=0.311 Sum_probs=84.3
Q ss_pred CCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhc
Q 003885 614 GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFA 693 (789)
Q Consensus 614 ~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~ 693 (789)
++++++++++++.++.+.|.+++.+.+||+|++ +++.|+++.+|+....
T Consensus 1 ~~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-----~~~~Giv~~~dl~~~~-------------------------- 49 (96)
T cd04614 1 RNVPTVWEETPLPVAVRIMELANVKALPVLDDD-----GKLSGIITERDLIAKS-------------------------- 49 (96)
T ss_pred CCccEeCCCCcHHHHHHHHHHcCCCeEEEECCC-----CCEEEEEEHHHHhcCC--------------------------
Confidence 367889999999999999988889999999976 8999999999994310
Q ss_pred cccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCc
Q 003885 694 KAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 773 (789)
Q Consensus 694 ~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl 773 (789)
.+.++.+++++.+++++|.+.+.+++||+|+ +++++|+||++|++
T Consensus 50 --------------------------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~---~~~~~Giit~~di~ 94 (96)
T cd04614 50 --------------------------------EVVTATKRTTVSECAQKMKRNRIEQIPIING---NDKLIGLLRDHDLL 94 (96)
T ss_pred --------------------------------CcEEecCCCCHHHHHHHHHHhCCCeeeEECC---CCcEEEEEEHHHhh
Confidence 1568999999999999999999999999997 68999999999998
Q ss_pred c
Q 003885 774 P 774 (789)
Q Consensus 774 ~ 774 (789)
+
T Consensus 95 ~ 95 (96)
T cd04614 95 K 95 (96)
T ss_pred c
Confidence 6
No 57
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=4.6e-11 Score=110.63 Aligned_cols=120 Identities=22% Similarity=0.339 Sum_probs=93.9
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
++.++++++++.++.+.+.+.+++.+||+|++ ++++|++++.|++.......+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-----~~~~G~v~~~~l~~~~~~~~~~~~~------------------ 58 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKA-----GELIGIITRRDIIRAGSVRTSVEDQ------------------ 58 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCC-----CcEEEEEEcHHHHhhccccccccch------------------
Confidence 56789999999999999998899999999986 8999999999997542110000000
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
..+ .......+.++|.+++.++.+++++.++++.|.+.+.+++||+|+ +|+++|+||++|+++
T Consensus 59 ------------~~~--~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~---~g~~~Gvit~~dl~~ 121 (122)
T cd04635 59 ------------QRT--QTKASPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNE---KDQLVGIVDRHDVLK 121 (122)
T ss_pred ------------hhh--hhhccCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcC---CCcEEEEEEhHHhhc
Confidence 000 000123456678888999999999999999999999999999997 789999999999985
No 58
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.24 E-value=6e-11 Score=108.11 Aligned_cols=112 Identities=23% Similarity=0.351 Sum_probs=93.6
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
++.++++++++.++.+.|.+.+++.+||+|++ ++++|+|++.|+...+.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----~~~~G~v~~~~l~~~~~~~~~---------------------- 54 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDD-----GRLVGIVSLDDIREILFDPSL---------------------- 54 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCC-----CCEEEEEEHHHHHHHHhcccc----------------------
Confidence 56789999999999999999899999999986 899999999999775533110
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
....++.++|++++.++.+++++.++++.|.+.+.+++||+|++ +++++|+||++|++.
T Consensus 55 -------------------~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~--~~~~~Gvvt~~di~~ 113 (114)
T cd04613 55 -------------------YDLVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDD--PGKLLGILSRSDLLS 113 (114)
T ss_pred -------------------cccEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCC--CCEEEEEEEhHHhhc
Confidence 00134566888899999999999999999999999999999731 378999999999975
No 59
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=3.8e-11 Score=109.67 Aligned_cols=112 Identities=22% Similarity=0.280 Sum_probs=92.2
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
++.++++++++.++.+.|.+++.+.+||+|++ ++++|+|+..+++..+....+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~-----~~~~G~v~~~~l~~~~~~~~~~~-------------------- 56 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDN-----GNLVGFLSEQDCLKQLLESSYHC-------------------- 56 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCC-----CeEEEEeehHHHHHHhhhhhhcc--------------------
Confidence 56788999999999999988888899999986 89999999999976553211100
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
.....+.++|++++.++.+++++.++++.|.+.+.+++||+|+ ++++|+||++|+++
T Consensus 57 -------------------~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~~~~Gvit~~di~~ 113 (114)
T cd04629 57 -------------------DGVATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD----GKLVGQISRRDVLR 113 (114)
T ss_pred -------------------CCCccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC----CEEEEEEEHHHHhc
Confidence 0012355678888899999999999999999999999999984 68999999999975
No 60
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.23 E-value=7e-11 Score=107.84 Aligned_cols=111 Identities=18% Similarity=0.236 Sum_probs=92.0
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
++.++++++++.++.+.+.+.+++.+||+|++ ++++|+++.+|+...+......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-----~~~~G~v~~~dl~~~~~~~~~~--------------------- 55 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDK-----KRLVGIITRYDVLSYALESEEL--------------------- 55 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCC-----CCEEEEEEHHHHHHhhhhhhhh---------------------
Confidence 35678999999999999999899999999986 8999999999997643221000
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
....+.++|.+++.++.+++++.++++.|.+.+..++||+|+ +|+++|+||++|+++
T Consensus 56 --------------------~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~---~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 56 --------------------KDAKVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDD---KGKVGGIVTEDDILR 112 (113)
T ss_pred --------------------cCCcHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECC---CCeEEEEEEHHHhhc
Confidence 012345677788899999999999999999999999999997 789999999999975
No 61
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.23 E-value=7e-11 Score=109.89 Aligned_cols=123 Identities=23% Similarity=0.316 Sum_probs=96.0
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCc-cccccccCCcccccccchhhhc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKK-FTKQKTMTGSDIMRRFKAHDFA 693 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~-~~~~~~~~~~~~~~~~~~~d~~ 693 (789)
++.++++++++.++.+.|.+.+++.+||+|++ .++++|+|+++|+...+.+.. +...+. .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~----~~~~~G~v~~~dl~~~~~~~~~~~~~~~---------------~ 62 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEG----TGKLVGIITATDILKYLGGGEKFNKIKT---------------G 62 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCC----CCEEEEEEEHHHHHHHhhccchhccccc---------------c
Confidence 56788999999999999999999999999873 279999999999987664321 000000 0
Q ss_pred cccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCc
Q 003885 694 KAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 773 (789)
Q Consensus 694 ~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl 773 (789)
.+ +.....++.++|++++.++++++++.++++.|++.+.+++||+|+ +++++|+||++|++
T Consensus 63 ----------~~------~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~---~~~~~Gvit~~di~ 123 (125)
T cd04631 63 ----------NG------LEAINEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDD---DGKLVGIVTERDLL 123 (125)
T ss_pred ----------cc------chhhhcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcC---CCcEEEEEEHHHhh
Confidence 00 000123466788888999999999999999999999999999997 68999999999998
Q ss_pred ch
Q 003885 774 PE 775 (789)
Q Consensus 774 ~~ 775 (789)
++
T Consensus 124 ~~ 125 (125)
T cd04631 124 KA 125 (125)
T ss_pred cC
Confidence 63
No 62
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.23 E-value=8.7e-11 Score=107.68 Aligned_cols=112 Identities=17% Similarity=0.253 Sum_probs=91.7
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
++.++++++++.++++.|.+.+++.+||+|++ .++++|+++.+|++..+.+....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~----~~~~~G~v~~~dl~~~~~~~~~~--------------------- 56 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRR----ESDAYGIVTMRDILKKVVAEGRD--------------------- 56 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECC----CCcEEEEEehHHHHHHHHhCCCC---------------------
Confidence 57789999999999999998889999999862 16899999999998755331000
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
.....+.++|++++.++++++++.+++++|.+.+.+++||+|+ ++++|+||++|+++
T Consensus 57 -------------------~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~----~~~~Gvi~~~dl~~ 113 (114)
T cd04630 57 -------------------PDRVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN----NELIGIISLTDIFL 113 (114)
T ss_pred -------------------CCccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC----CEEEEEEEHHHhhc
Confidence 0012345677788899999999999999999999999999983 78999999999975
No 63
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=1e-10 Score=108.90 Aligned_cols=120 Identities=15% Similarity=0.177 Sum_probs=91.8
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
++.++++++++.++.+.|.+.++..+||+|++ .++++|+|+..|++..+.+..-.. +..+..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~----~~~~~Giv~~~dl~~~~~~~~~~~-------------~~~~~~- 63 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEE----SGEVIGILSQRRLVEFLWENARSF-------------PGLDPL- 63 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCC----CCcEEEEEEHHHHHHHHHHhHHhc-------------cchhhh-
Confidence 57789999999999999998888999999973 168999999999987654311000 000000
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCc
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 773 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl 773 (789)
........++|++++.++.+++++.+|++.|.+.+.+++||+|+ +++++|+||+.|+-
T Consensus 64 ------------------~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~~~~vGiit~~di~ 121 (123)
T cd04627 64 ------------------YPIPLRDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDN---QGNLIGNISVTDVR 121 (123)
T ss_pred ------------------hhhhhhhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECC---CCcEEEEEeHHHhh
Confidence 00011223467788889999999999999999999999999997 78999999999974
No 64
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=7.2e-11 Score=111.38 Aligned_cols=128 Identities=21% Similarity=0.287 Sum_probs=96.2
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
++.++++++++.++.+.+.+.+++.+||+|++ ++++|+|+..++...+.+....... ..+....+.
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-----~~~~G~i~~~~l~~~~~~~~~~~~~--------~~~~~~~~~- 67 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNE-----GRVVGIVSEGDLIRKIYKGKGLFYV--------TLLYSVIFL- 67 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCC-----CCEEEEEeHHHHHHHHhccCCcccc--------ccccccccc-
Confidence 56789999999999999998899999999986 8999999999998766432100000 000000000
Q ss_pred ccCCCCCcccccccchhhh--hhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccC
Q 003885 695 AGSGKGVKLEDLDIKEEEM--EMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDF 772 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~--~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DL 772 (789)
+ +++. ....++.++|++++..+.+++++.+++++|.+.+.+++||+|+ ++++|+||++|+
T Consensus 68 ----------~----~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----~~~iGvit~~dl 129 (132)
T cd04636 68 ----------D----ESKIKKLLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD----GKLVGIISRGDI 129 (132)
T ss_pred ----------c----hHHHHHHcCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC----CEEEEEEEHHHh
Confidence 0 0000 1123677889999999999999999999999999999999984 789999999999
Q ss_pred cc
Q 003885 773 MP 774 (789)
Q Consensus 773 l~ 774 (789)
++
T Consensus 130 ~~ 131 (132)
T cd04636 130 IR 131 (132)
T ss_pred hc
Confidence 86
No 65
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.21 E-value=4.7e-11 Score=136.61 Aligned_cols=145 Identities=14% Similarity=0.149 Sum_probs=108.4
Q ss_pred hhHHHHHHHcCCCcccccc--ccccc-ccceeeccc---CCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeE
Q 003885 581 GVYDQIVKLKGLPYLEAHA--EPYMK-NLVASDVVS---GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPEL 654 (789)
Q Consensus 581 ~iy~~~l~~kg~p~l~~~~--~~~l~-~l~v~dvM~---~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l 654 (789)
.+--.+.+.+|+.+.+... +...+ -.+++++|. .+..++++++++.++++.|.+++++.+||+|++ .+++++
T Consensus 66 alAiala~~gG~g~Ih~n~sie~qa~lV~kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~--~~~gkL 143 (502)
T PRK07107 66 NMAIALAREGGLSFIFGSQSIESEAAMVRRVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDG--TAHGKL 143 (502)
T ss_pred HHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCC--CcCCEE
Confidence 3444456667777654221 11111 135677775 344689999999999999999999999999962 113899
Q ss_pred EEEEehHHHHHHHhcCccccccccCCcccccccchhhhccccCCCCCcccccccchhhhhhcccccccccC--CCeeecC
Q 003885 655 CGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNT--SPYTVVE 732 (789)
Q Consensus 655 ~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~--~p~tV~~ 732 (789)
+|+|+..|+.... . . ....++++|++ +++++++
T Consensus 144 vGIVT~~DLr~~~-~-----~---------------------------------------~~~~V~dIMt~~~~~itv~~ 178 (502)
T PRK07107 144 LGIVTSRDYRISR-M-----S---------------------------------------LDTKVKDFMTPFEKLVTANE 178 (502)
T ss_pred EEEEEcHHhhccc-c-----C---------------------------------------CCCCHHHHhCCCCCeEEECC
Confidence 9999999984210 0 0 01235678876 6788999
Q ss_pred CCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcch
Q 003885 733 TMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPE 775 (789)
Q Consensus 733 ~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~ 775 (789)
++++.+|+++|.+.+++++||||+ +++++|+||++|+++.
T Consensus 179 d~~l~eAl~lM~e~~i~~LPVVD~---~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 179 GTTLKEANDIIWDHKLNTLPIVDK---NGNLVYLVFRKDYDSH 218 (502)
T ss_pred CCcHHHHHHHHHHcCCCEEEEEcC---CCeEEEEEEhHHHHhc
Confidence 999999999999999999999997 7899999999999984
No 66
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.21 E-value=1.3e-10 Score=106.58 Aligned_cols=110 Identities=18% Similarity=0.235 Sum_probs=88.0
Q ss_pred CeEEecCCCcHHHHHHHHhhcC-CCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhc
Q 003885 615 PLITFSGVEKVGNIMHALRLTR-HNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFA 693 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~-~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~ 693 (789)
++.++++++++.++.+.+.+++ +..+||+|+ ++++|+++..|++..+......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------~~~~G~v~~~dl~~~~~~~~~~-------------------- 55 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEK------GRLLGIFTERDIVRLTAIGKDL-------------------- 55 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCC------CcEEEEEeHHHHHHHHhcCCCc--------------------
Confidence 4568899999999999998777 667777774 7899999999998765331100
Q ss_pred cccCCCCCcccccccchhhhhhcccccccccCCCeeecCC--CCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEeccc
Q 003885 694 KAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVET--MSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHD 771 (789)
Q Consensus 694 ~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~--~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~D 771 (789)
....+.++|.+++.++.++ +++.+++++|.+.+...+||+|+ +|+++|+||++|
T Consensus 56 ---------------------~~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~---~~~~~Gvit~~d 111 (115)
T cd04620 56 ---------------------SDLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDD---QGQLIGLVTAES 111 (115)
T ss_pred ---------------------cccCHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcC---CCCEEEEEEhHH
Confidence 0012455677778888887 79999999999999999999997 789999999999
Q ss_pred Ccc
Q 003885 772 FMP 774 (789)
Q Consensus 772 Ll~ 774 (789)
+++
T Consensus 112 l~~ 114 (115)
T cd04620 112 IRQ 114 (115)
T ss_pred hhc
Confidence 986
No 67
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.21 E-value=5e-11 Score=136.76 Aligned_cols=145 Identities=19% Similarity=0.207 Sum_probs=112.3
Q ss_pred CchhHHHHHHHcCCCcccc-cccccccccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEE
Q 003885 579 NQGVYDQIVKLKGLPYLEA-HAEPYMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGL 657 (789)
Q Consensus 579 ~~~iy~~~l~~kg~p~l~~-~~~~~l~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~Gl 657 (789)
..-.++.+++.+++-..+. .....++.++++|+|.+++.++++++++.++++.|.+++++.+||+|++ ++++|+
T Consensus 307 ~~~~~~~w~~~~~~~~~~~~~~~~~l~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~-----~~~~Gi 381 (454)
T TIGR01137 307 TKFLNDEWMKDNGFLDDEVLTVFDVLKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEA-----GKVLGS 381 (454)
T ss_pred CcccChHHHHhcCCcccccccHHHHhccCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----CeEEEE
Confidence 4444566777776532211 2334588899999999999999999999999999998899999999986 899999
Q ss_pred EehHHHHHHHhcCccccccccCCcccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHH
Q 003885 658 VLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLA 737 (789)
Q Consensus 658 I~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~ 737 (789)
|+.+|+...+..... +....+.++|++++.++++++++.
T Consensus 382 vt~~dl~~~~~~~~~-----------------------------------------~~~~~v~~im~~~~~~v~~~~~l~ 420 (454)
T TIGR01137 382 VTLRELLSALFAGKA-----------------------------------------NPDDAVSKVMSKKFIQIGEGEKLS 420 (454)
T ss_pred EEHHHHHHHHhccCC-----------------------------------------CcCCCHHHhcCCCCeEECCcCcHH
Confidence 999999875532100 001134567888888999999999
Q ss_pred HHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcch
Q 003885 738 KAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPE 775 (789)
Q Consensus 738 ~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~ 775 (789)
+++++|.+.+ .+||++ +++++|+||++|+++.
T Consensus 421 ~a~~~~~~~~---~~vV~~---~g~liGvvt~~dll~~ 452 (454)
T TIGR01137 421 DLSKFLEKNS---SAIVTE---EGKPIGVVTKIDLLSF 452 (454)
T ss_pred HHHHHHHHCC---eeEEEE---CCEEEEEEEHHHHHHh
Confidence 9999998853 456665 6889999999999875
No 68
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.20 E-value=1.1e-10 Score=106.45 Aligned_cols=111 Identities=20% Similarity=0.181 Sum_probs=93.1
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
++.++++++++.++.+.+.+.+++.+||+|++ ++++|+++..++..++.+..-. +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~-----~~~~G~v~~~~i~~~~~~~~~~-~------------------- 57 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDED-----GRLVGIFTDGDLRRALEKGLDI-L------------------- 57 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCC-----CCEEEEechHHHHHHHhccCcc-c-------------------
Confidence 45678999999999999988888999999986 8999999999998876531100 0
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
...+.++|++.+.++.+++++.++++.|++.+...+||+|+ +++++|+||+.|+++
T Consensus 58 ---------------------~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~~~iG~it~~di~~ 113 (114)
T cd04604 58 ---------------------TLPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDD---NGRPVGVLHIHDLLR 113 (114)
T ss_pred ---------------------cCCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECC---CCCEEEEEEHHHhhc
Confidence 01345677788889999999999999999999999999997 789999999999975
No 69
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.20 E-value=1.4e-10 Score=105.64 Aligned_cols=109 Identities=19% Similarity=0.256 Sum_probs=91.3
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
++.+++++++++++.+.+.+++++.+||+|++ +++.|+++.+|+..+......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-----~~~~G~v~~~dl~~~~~~~~~---------------------- 54 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNE-----EKLKGVVTFTDILDLDLFESF---------------------- 54 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCC-----CCEEEEEehHHhHHHHhhccc----------------------
Confidence 56789999999999999998899999999986 899999999999765422100
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
....+.++|++++.++.+++++.++++.|.+.+...+||+|+ ++++|+||+.|+++
T Consensus 55 --------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~~~~G~it~~di~~ 110 (111)
T cd04626 55 --------------------LEKKVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD----NKLIGVVRTKDILD 110 (111)
T ss_pred --------------------ccCcHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC----CEEEEEEEhHHhcc
Confidence 011345577888889999999999999999999999999984 68999999999975
No 70
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.20 E-value=2e-10 Score=104.29 Aligned_cols=109 Identities=23% Similarity=0.311 Sum_probs=92.3
Q ss_pred CCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhc
Q 003885 614 GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFA 693 (789)
Q Consensus 614 ~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~ 693 (789)
+++.++++++++.++.+.|.+.+++.+||+|+ +++.|+++.+|++....+...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------~~~~G~v~~~~l~~~~~~~~~--------------------- 53 (110)
T cd04588 1 KPLITLNPNATLREAARLFNTHHIHGAPVVDD------GKLVGIVTLSDIAHAIARGLE--------------------- 53 (110)
T ss_pred CCcEEECCCCCHHHHHHHHHHcCCCEEEEeeC------CEEEEEEEHHHHHHHHhcccc---------------------
Confidence 35778999999999999999888999999987 689999999999775433110
Q ss_pred cccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCc
Q 003885 694 KAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 773 (789)
Q Consensus 694 ~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl 773 (789)
..++.++|++++.++.+++++.++++.|.+.+.+++||+|+ +++++|+||++|++
T Consensus 54 ----------------------~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~~~~G~i~~~dl~ 108 (110)
T cd04588 54 ----------------------LAKVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDD---EGRPVGIITRTDIL 108 (110)
T ss_pred ----------------------ccCHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECC---CCCEEEEEEhHHhh
Confidence 02345577788899999999999999999999999999987 78999999999997
Q ss_pred c
Q 003885 774 P 774 (789)
Q Consensus 774 ~ 774 (789)
+
T Consensus 109 ~ 109 (110)
T cd04588 109 R 109 (110)
T ss_pred c
Confidence 5
No 71
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.20 E-value=1.2e-10 Score=106.79 Aligned_cols=109 Identities=19% Similarity=0.276 Sum_probs=88.3
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
++.+++++++++++.+.|.+.+++.+||+|+. .+.++++|+++.+|++.....
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~--~~~~~~~G~v~~~dl~~~~~~------------------------- 55 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDG--KSGGKLLGIVTSRDIDFLTDS------------------------- 55 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCC--CcCCEEEEEEEhHHhhhhhcc-------------------------
Confidence 56788999999999999988888899999961 012899999999998532100
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccCCCeeecC--CCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccC
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVE--TMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDF 772 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~--~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DL 772 (789)
..+++++|.+.+.++.. ++++.+++++|++.+.+++||+|+ +++++|+||++|+
T Consensus 56 ---------------------~~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~---~~~~~Gvit~~di 111 (114)
T cd04602 56 ---------------------ETPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVND---DGELVALVTRSDL 111 (114)
T ss_pred ---------------------CCCHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECC---CCeEEEEEEHHHh
Confidence 01245677777777766 999999999999999999999997 7899999999998
Q ss_pred cc
Q 003885 773 MP 774 (789)
Q Consensus 773 l~ 774 (789)
++
T Consensus 112 ~~ 113 (114)
T cd04602 112 KK 113 (114)
T ss_pred hc
Confidence 75
No 72
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.19 E-value=1.5e-10 Score=108.42 Aligned_cols=126 Identities=21% Similarity=0.259 Sum_probs=94.5
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
++.+++++++++++.+.|.+.+++.+||+|++ +++.|+|++.|+..++.......... ... .
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----~~~~G~it~~dl~~~~~~~~~~~~~~--------~~~-~---- 63 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDN-----GKLTGIVTRHDIVDFVVRDRDKARTG--------DRS-G---- 63 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCC-----CcEEEEEEHHHHHHHHhhhhhhcchh--------hhh-h----
Confidence 56788999999999999999999999999987 89999999999987653311000000 000 0
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
+.+.....++.++|+++++++.+++++.+++++|.+.+.+.+||+++ .++++++|+||++|+++
T Consensus 64 ---------------~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~-~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 64 ---------------EKERMLDLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTP-DDDTKVVGILTKKDVLR 127 (128)
T ss_pred ---------------hhhhhccCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEecc-CCCCcEEEEEEhHhhhc
Confidence 00001123456788888999999999999999999999999999842 11578999999999986
No 73
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.19 E-value=2.3e-10 Score=104.25 Aligned_cols=111 Identities=22% Similarity=0.273 Sum_probs=90.8
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
++.++++++++.++.+.|.+++++.+||+|+ ++++|+++++|++..+......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~------~~~~G~i~~~~l~~~~~~~~~~--------------------- 54 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN------DRLVGIVTDRDIVVRAVAEGRD--------------------- 54 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC------CEEEEEEEhHHHHHHHhhccCC---------------------
Confidence 5678999999999999999989999999987 6999999999986322110000
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
. ...++.++|++.+.++.+++++.++++.|.+.+..++||+|+ +++++|+||++|+++
T Consensus 55 ------------------~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~~~~G~it~~di~~ 112 (113)
T cd04622 55 ------------------P-DTTTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDD---DGRLVGIVSLGDLAR 112 (113)
T ss_pred ------------------c-ccCCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECC---CCcEEEEEEHHHhhc
Confidence 0 011356678888899999999999999999999999999987 689999999999975
No 74
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.19 E-value=2e-10 Score=104.21 Aligned_cols=100 Identities=43% Similarity=0.678 Sum_probs=87.4
Q ss_pred CCeEEecCCCcHHHHHHHHhhcCCCeeEEeeC---CCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchh
Q 003885 614 GPLITFSGVEKVGNIMHALRLTRHNGFPVIDE---PPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAH 690 (789)
Q Consensus 614 ~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~---~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~ 690 (789)
+.+..+++++++.++.+.+.+.+++.+||+|+ + ++++|+|+++|+.....+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~-----~~~~G~v~~~dl~~~~~~--------------------- 55 (105)
T cd04591 2 PLVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEES-----PRLVGYILRSQLVVALKN--------------------- 55 (105)
T ss_pred CceEEecccccHHHHHHHHHhCCCCCcceEcCCCCC-----CEEEEEEeHHHHHHHHHH---------------------
Confidence 35678899999999999999988999999997 4 899999999999553310
Q ss_pred hhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecc
Q 003885 691 DFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRH 770 (789)
Q Consensus 691 d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~ 770 (789)
+|.+++.++++++++.+++++|.+.+.+++||++ +++++|+||++
T Consensus 56 -------------------------------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~----~~~~~Gvvt~~ 100 (105)
T cd04591 56 -------------------------------YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD----EGRLVGIITRK 100 (105)
T ss_pred -------------------------------hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE----CCeEEEEEEhh
Confidence 5667788999999999999999999999999996 57899999999
Q ss_pred cCcc
Q 003885 771 DFMP 774 (789)
Q Consensus 771 DLl~ 774 (789)
|+++
T Consensus 101 dl~~ 104 (105)
T cd04591 101 DLLK 104 (105)
T ss_pred hhhc
Confidence 9976
No 75
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.19 E-value=1.7e-10 Score=105.13 Aligned_cols=111 Identities=20% Similarity=0.228 Sum_probs=91.1
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
++.+++++++++++.+.|.+++.+.+||+|+ ++++|+|+.+|++..+.......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~------~~~~G~v~~~dl~~~~~~~~~~~-------------------- 55 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG------NKLVGIFTSKDIALRVVAQGLDP-------------------- 55 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC------CEEEEEEEhHHHHHHHHhcCCCc--------------------
Confidence 5678899999999999998888889999986 69999999999974332110000
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
....+.++|++++.++.+++++.++++.|.+.+.+++||+|+ +++++|+||++|++.
T Consensus 56 --------------------~~~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~---~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 56 --------------------ESTLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDK---SGQVVGLLDVTKLTH 112 (113)
T ss_pred --------------------CcCCHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECC---CCCEEEEEEHHHhcc
Confidence 002345678888999999999999999999999999999997 689999999999975
No 76
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.19 E-value=1.7e-10 Score=107.90 Aligned_cols=124 Identities=21% Similarity=0.297 Sum_probs=92.6
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
++.++++++++.++.+.|.+++.+.+||+|++ ++++|+++..|++....+....... ....+.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~-----~~~~Giv~~~dl~~~~~~~~~~~~~-----------~~~~~~- 64 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEK-----GKLIGNISASDLKGLLLSPDDLLLY-----------RTITFK- 64 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCC-----CcEEEEEEHHHhhhhhcCcchhhcc-----------cchhhh-
Confidence 46789999999999999998899999999986 8999999999998765331100000 000000
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
++. ....+....|.+++.++++++++.+++++|.+.+.+++||+|+ +++++|+||+.|+++
T Consensus 65 ----------~~~------~~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~---~~~~~Giit~~dil~ 125 (126)
T cd04642 65 ----------ELS------EKFTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDE---EGKPIGVITLTDIIS 125 (126)
T ss_pred ----------hhh------hhcccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECC---CCCEEEEEEHHHHhc
Confidence 000 0001222356677889999999999999999999999999997 789999999999875
No 77
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.19 E-value=1.4e-10 Score=104.18 Aligned_cols=103 Identities=20% Similarity=0.289 Sum_probs=87.8
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
++.++++++++.++.+.|.+.+++.+||+|+ ++++|+++.+++.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~------~~~~Giv~~~~l~~~~~-------------------------- 49 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVED------GKLVGIITSRDVRRAHP-------------------------- 49 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC------CEEEEEEehHHhhcccc--------------------------
Confidence 5678899999999999999888899999984 79999999999954210
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
...+.++|++++.++++++++.++++.|.+.+.+++||+|+ ++++|+||++|++.
T Consensus 50 ---------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~~~~G~it~~~l~~ 104 (105)
T cd04599 50 ---------------------NRLVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE----RKLVGIITKGTIAL 104 (105)
T ss_pred ---------------------cCCHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC----CEEEEEEEHHHhcc
Confidence 01235577888999999999999999999999999999983 78999999999974
No 78
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.18 E-value=1.2e-10 Score=105.44 Aligned_cols=107 Identities=21% Similarity=0.248 Sum_probs=88.9
Q ss_pred CCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhc
Q 003885 614 GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFA 693 (789)
Q Consensus 614 ~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~ 693 (789)
+++.+++.++++.++.+.|.+.++..+||+|++ ++++|+++.+++.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-----~~~~G~v~~~~l~~~~~------------------------- 51 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDD-----GKLVGIVTNRDLRFETD------------------------- 51 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCC-----CEEEEEEEhhHeeeccc-------------------------
Confidence 456788999999999999998899999999986 89999999998842100
Q ss_pred cccCCCCCcccccccchhhhhhcccccccccCCCeeecC-CCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccC
Q 003885 694 KAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVE-TMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDF 772 (789)
Q Consensus 694 ~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~-~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DL 772 (789)
....+.++|++.+.++.+ ++++.++++.|++.+.+.+||+|+ +++++|+||++|+
T Consensus 52 ---------------------~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~~~~Gvi~~~di 107 (110)
T cd04601 52 ---------------------LDKPVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDD---EGKLKGLITVKDI 107 (110)
T ss_pred ---------------------CCCCHHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcC---CCCEEEEEEhhhh
Confidence 012345677777777777 999999999999999999999997 7899999999999
Q ss_pred cc
Q 003885 773 MP 774 (789)
Q Consensus 773 l~ 774 (789)
++
T Consensus 108 l~ 109 (110)
T cd04601 108 EK 109 (110)
T ss_pred hc
Confidence 75
No 79
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.18 E-value=1.8e-10 Score=106.82 Aligned_cols=120 Identities=18% Similarity=0.283 Sum_probs=95.0
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
++++++++++++++.+.|.+++++.+||+|+ ++++|+++..++...+.+.. .... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~------~~~~G~v~~~~l~~~~~~~~-~~~~------~----------- 57 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED------NELVGVISDRDYLKAISPFL-GTAG------E----------- 57 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC------CeEEEEEEHHHHHHHHHHHh-cccc------c-----------
Confidence 5678999999999999999989999999996 69999999999987654210 0000 0
Q ss_pred ccCCCCCcccccccchhhh-hhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCc
Q 003885 695 AGSGKGVKLEDLDIKEEEM-EMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 773 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~-~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl 773 (789)
...+. ....++.++|+++++++.+++++.++++.|.+.+.+.+||+|+ +++++|++|++|++
T Consensus 58 --------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~---~~~~~Gvit~~dll 120 (122)
T cd04637 58 --------------TEKDLATLNRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDE---NGQLIGIITWKDLL 120 (122)
T ss_pred --------------hHHHHHHHHhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECC---CCCEEEEEEHHHhh
Confidence 00000 0113467788899999999999999999999999999999987 78999999999998
Q ss_pred ch
Q 003885 774 PE 775 (789)
Q Consensus 774 ~~ 775 (789)
++
T Consensus 121 ~~ 122 (122)
T cd04637 121 KY 122 (122)
T ss_pred hC
Confidence 63
No 80
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.18 E-value=1.4e-10 Score=106.30 Aligned_cols=114 Identities=17% Similarity=0.269 Sum_probs=90.6
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
+++++++++++.++.+.+++.+.+.+||+|++ ++++|+|+.+|+...+.+.. ..+ ..++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-----~~~~Giv~~~dl~~~~~~~~-~~~-------------~~~~-- 60 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKE-----GKYVGTISLTDILWKLKGLE-NLD-------------LERL-- 60 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCC-----CcEEEEEeHHHHHHHhhccC-chh-------------HHHH--
Confidence 46789999999999999998899999999986 89999999999977653210 000 0000
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
....+.++|++.+.++.+++++.+++++|.+.+ .+||+|+ +++++|+||++|+++
T Consensus 61 --------------------~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~---~~~~~Gvit~~dil~ 115 (116)
T cd04643 61 --------------------VDLKVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDD---DGIFIGIITRREILK 115 (116)
T ss_pred --------------------hCCcHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeC---CCeEEEEEEHHHhhc
Confidence 012356678888999999999999999998865 5999997 789999999999986
No 81
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.18 E-value=2.6e-10 Score=103.53 Aligned_cols=109 Identities=23% Similarity=0.344 Sum_probs=92.1
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
++.+++++++++++.+.|.++++..+||+|+ ++++|+++.+||......+.-
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~------~~~~G~v~~~~l~~~~~~~~~---------------------- 53 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD------GRPLGIVTERDILRLLASGPD---------------------- 53 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC------CEEEEEEeHHHHHHHHhcCCC----------------------
Confidence 5678899999999999999888999999986 699999999999776532110
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
....+.++|++++.++++++++.++++.|.+.+.+++||+|+ +++++|+||++|+++
T Consensus 54 --------------------~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~---~~~~~Gvi~~~di~~ 110 (111)
T cd04611 54 --------------------LQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDD---DGELLGLLSQTDLLQ 110 (111)
T ss_pred --------------------CCcCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECC---CCcEEEEEEhHHhhc
Confidence 012345677888899999999999999999999999999997 789999999999975
No 82
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.18 E-value=2e-10 Score=105.89 Aligned_cols=120 Identities=23% Similarity=0.285 Sum_probs=94.5
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
++.++++++++.++.+.|.+.+++.+||+|+ ++++|++++.++............ ..+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~------~~~~G~i~~~~l~~~~~~~~~~~~-------------~~~~~- 61 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR------GKLVGIVTDRDLKLASPSKATTLD-------------IWELY- 61 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC------CeEEEEEeHHHHHHhhhccccccc-------------chhhh-
Confidence 5678999999999999999989999999987 699999999999765532110000 00000
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
. .....++.++|++++.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+||++|+++
T Consensus 62 -------------~----~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~~~~Gvvt~~di~~ 121 (122)
T cd04585 62 -------------Y----LLSKIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDD---QGRLVGIITESDLFR 121 (122)
T ss_pred -------------h----hhcccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECC---CCcEEEEEEHHHhhh
Confidence 0 00124567788889999999999999999999999999999997 689999999999975
No 83
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.18 E-value=1.1e-10 Score=133.93 Aligned_cols=125 Identities=13% Similarity=0.136 Sum_probs=103.0
Q ss_pred ceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccc
Q 003885 607 VASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRR 686 (789)
Q Consensus 607 ~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~ 686 (789)
++++.|..++++++++++++++.+.|++++++.+||+|++ ...++++|+|+.+|+.... .
T Consensus 97 ~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~--~~~gkLvGIVt~~DL~~~~-~----------------- 156 (495)
T PTZ00314 97 RFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDG--KVGGKLLGIVTSRDIDFVK-D----------------- 156 (495)
T ss_pred ccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCC--ccCCeEEEEEEHHHHhhcc-c-----------------
Confidence 4667888899999999999999999999999999999973 1137999999999995210 0
Q ss_pred cchhhhccccCCCCCcccccccchhhhhhcccccccccC--CCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEE
Q 003885 687 FKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNT--SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIV 764 (789)
Q Consensus 687 ~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vv 764 (789)
...+++++|++ +++++++++++.+++++|.+.+.+.+||||+ +++++
T Consensus 157 ----------------------------~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~---~g~li 205 (495)
T PTZ00314 157 ----------------------------KSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVND---NGELV 205 (495)
T ss_pred ----------------------------CCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC---CCcEE
Confidence 01245678876 7889999999999999999999999999998 88999
Q ss_pred EEEecccCcchhhhccCcccc
Q 003885 765 GILTRHDFMPEHVLGLYPHIV 785 (789)
Q Consensus 765 GIITr~DLl~~~~~~~~~~l~ 785 (789)
|+||++|+++.. .+|+..
T Consensus 206 GIIT~~DIl~~~---~~p~a~ 223 (495)
T PTZ00314 206 ALVSRSDLKKNR---GYPNAS 223 (495)
T ss_pred EEEEehHhhhcc---cCchhh
Confidence 999999999853 355543
No 84
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.17 E-value=1.4e-10 Score=132.21 Aligned_cols=121 Identities=18% Similarity=0.283 Sum_probs=102.3
Q ss_pred ccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccc
Q 003885 605 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIM 684 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~ 684 (789)
-++.++.|.+++++++++++++++.+.|.+++++.+||+|++ ...++++|+|+.+||+.....
T Consensus 79 Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~--~~~~~lvGIVt~rDL~~~~~~--------------- 141 (450)
T TIGR01302 79 VKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDG--DMTGKLVGIITKRDIRFVKDK--------------- 141 (450)
T ss_pred hccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCC--CCCCeEEEEEEHHHHhhhhcC---------------
Confidence 356788899999999999999999999999999999999974 112589999999999532100
Q ss_pred cccchhhhccccCCCCCcccccccchhhhhhccccccccc-CCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCE
Q 003885 685 RRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITN-TSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPI 763 (789)
Q Consensus 685 ~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~-~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~v 763 (789)
..+++++|+ ++++++++++++.+++++|++.+.+++||+|+ ++++
T Consensus 142 -------------------------------~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe---~G~l 187 (450)
T TIGR01302 142 -------------------------------GKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDK---NGEL 187 (450)
T ss_pred -------------------------------CCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcC---CCcE
Confidence 123566787 48899999999999999999999999999998 8899
Q ss_pred EEEEecccCcchh
Q 003885 764 VGILTRHDFMPEH 776 (789)
Q Consensus 764 vGIITr~DLl~~~ 776 (789)
+|+||++|+++..
T Consensus 188 vGiVT~~DIl~~~ 200 (450)
T TIGR01302 188 VGLITMKDIVKRR 200 (450)
T ss_pred EEEEEhHHhhhcc
Confidence 9999999999864
No 85
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.17 E-value=8.2e-11 Score=133.78 Aligned_cols=121 Identities=24% Similarity=0.237 Sum_probs=103.9
Q ss_pred cccccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCc
Q 003885 602 YMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGS 681 (789)
Q Consensus 602 ~l~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~ 681 (789)
.++.+++.++|.+++++++++++++++.+.|++.+++.+||+|+ ++++|+|+.+||... .
T Consensus 84 ~v~~VKv~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~------gklvGIVT~rDL~~~--~------------ 143 (475)
T TIGR01303 84 TVAFVKSRDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVILE------DRPVGLVTDSDLLGV--D------------ 143 (475)
T ss_pred HHhhcchhhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC------CEEEEEEEHHHhhcC--C------------
Confidence 35678888999999999999999999999999988888888885 689999999998311 0
Q ss_pred ccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCC
Q 003885 682 DIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRP 761 (789)
Q Consensus 682 ~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~ 761 (789)
....++++|+++++++++++++.+|+++|.+.+.+++||||+ ++
T Consensus 144 ---------------------------------~~~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~---~g 187 (475)
T TIGR01303 144 ---------------------------------RFTQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDA---DG 187 (475)
T ss_pred ---------------------------------CCCCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcC---CC
Confidence 012356788899999999999999999999999999999997 78
Q ss_pred CEEEEEecccCcchhhh
Q 003885 762 PIVGILTRHDFMPEHVL 778 (789)
Q Consensus 762 ~vvGIITr~DLl~~~~~ 778 (789)
+++|+||++||++....
T Consensus 188 ~LvGIIT~~DLl~~~~~ 204 (475)
T TIGR01303 188 TLAGILTRTGALRATIY 204 (475)
T ss_pred eEEEEEEHHHHHHHHhC
Confidence 89999999999985443
No 86
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.17 E-value=2.7e-10 Score=103.58 Aligned_cols=110 Identities=19% Similarity=0.304 Sum_probs=91.0
Q ss_pred CCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhc
Q 003885 614 GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFA 693 (789)
Q Consensus 614 ~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~ 693 (789)
+++.+++++.+++++.+.+.+.++..+||+|+ ++++|+|+.+++...+.....
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~------~~~~G~v~~~~l~~~~~~~~~--------------------- 53 (111)
T cd04800 1 RPPVTCSPDTTIREAARLMTEHRVSSLLVVDD------GRLVGIVTDRDLRNRVVAEGL--------------------- 53 (111)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeEEEEEC------CEEEEEEEhHHHHHHHhccCC---------------------
Confidence 35678999999999999998888899999987 699999999999764432100
Q ss_pred cccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCc
Q 003885 694 KAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 773 (789)
Q Consensus 694 ~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl 773 (789)
.....+.++|++++.++++++++.++++.|.+.+..++||+|+ ++++|+||++|++
T Consensus 54 --------------------~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~~~~Giit~~di~ 109 (111)
T cd04800 54 --------------------DPDTPVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD----GRLVGVISATDLL 109 (111)
T ss_pred --------------------CccCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC----CEEEEEEEHHHhh
Confidence 0012355678888999999999999999999999999999983 6899999999997
Q ss_pred c
Q 003885 774 P 774 (789)
Q Consensus 774 ~ 774 (789)
+
T Consensus 110 ~ 110 (111)
T cd04800 110 R 110 (111)
T ss_pred c
Confidence 5
No 87
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.16 E-value=7.1e-11 Score=134.79 Aligned_cols=123 Identities=18% Similarity=0.192 Sum_probs=102.7
Q ss_pred ccccceeecccCCeEEecCCCcHHHHHHHHhh-----cCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccc
Q 003885 603 MKNLVASDVVSGPLITFSGVEKVGNIMHALRL-----TRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKT 677 (789)
Q Consensus 603 l~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~-----~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~ 677 (789)
.+..+++++|++++++++++++++++.+.+++ .+...+||+|++ ++++|+|+.+|++.. + .
T Consensus 128 ~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~-----~~l~GvV~l~dLl~a--~-----~-- 193 (449)
T TIGR00400 128 YSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNES-----KHLKGVLSIRDLILA--K-----P-- 193 (449)
T ss_pred CCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCC-----CeEEEEEEHHHHhcC--C-----C--
Confidence 34578999999999999999999999999975 233567888876 899999999998421 0 0
Q ss_pred cCCcccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCC
Q 003885 678 MTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKT 757 (789)
Q Consensus 678 ~~~~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~ 757 (789)
...++++|+++++++++++++.++.+.|+++++..+||||+
T Consensus 194 --------------------------------------~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~- 234 (449)
T TIGR00400 194 --------------------------------------EEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDN- 234 (449)
T ss_pred --------------------------------------CCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcC-
Confidence 01356788888999999999999999999999999999998
Q ss_pred CCCCCEEEEEecccCcchhhhcc
Q 003885 758 PGRPPIVGILTRHDFMPEHVLGL 780 (789)
Q Consensus 758 ~~~~~vvGIITr~DLl~~~~~~~ 780 (789)
+|+++|+||++|+++...++.
T Consensus 235 --~g~lvGiIt~~Dil~~l~~~~ 255 (449)
T TIGR00400 235 --EGRLVGIVTVDDIIDVIQSEA 255 (449)
T ss_pred --CCeEEEEEEHHHHHHHHHhhh
Confidence 789999999999998766543
No 88
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.16 E-value=2.2e-10 Score=108.95 Aligned_cols=133 Identities=16% Similarity=0.158 Sum_probs=95.4
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
++.+++++.++.++.+.|.+.+++.+||+|++ ++++|+|+..|++..+......... . ... .+..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~-----~~~~Giv~~~dl~~~~~~~~~~~~~--~-----~~~---~~~~ 66 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDN-----GKPVGVITYRDLAFAEFEDNERGLP--K-----KSI---KMKR 66 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCC-----CCEEEEEeHHHHHHHhhcccccccc--h-----hhh---hhhh
Confidence 45788999999999999999999999999987 8999999999998766432110000 0 000 0000
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
.......... .....+++++|.+++.++.+++++.++++.|.+.+.+++||++ +++++|+||+.|+++
T Consensus 67 ~~~~~~~~~~--------~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~----~~~~~Gvit~~di~~ 134 (135)
T cd04621 67 KAGQKRYRYV--------KEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVD----NDNIVGVITKTDICR 134 (135)
T ss_pred hccccccccc--------ccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEe----CCEEEEEEEHHHHhh
Confidence 0000000000 0012346778888889999999999999999999999999998 478999999999976
No 89
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.15 E-value=1.1e-10 Score=137.04 Aligned_cols=164 Identities=17% Similarity=0.174 Sum_probs=115.4
Q ss_pred cceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCcc----ccccc----
Q 003885 606 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKF----TKQKT---- 677 (789)
Q Consensus 606 l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~----~~~~~---- 677 (789)
.+++|+|.++++++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|+...+.+..- ...+.
T Consensus 68 ~~V~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~ 142 (546)
T PRK14869 68 PQVRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-----GKLLGLVSLSDLARAYMDILDPEILSKSPTSLEN 142 (546)
T ss_pred CcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----CEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHH
Confidence 68999999999999999999999999999999999999987 899999999999886654221 00000
Q ss_pred ----------cCCc-cc--cccc-----chhhh---cccc-----CCC-------------------CCccc--------
Q 003885 678 ----------MTGS-DI--MRRF-----KAHDF---AKAG-----SGK-------------------GVKLE-------- 704 (789)
Q Consensus 678 ----------~~~~-~~--~~~~-----~~~d~---~~~~-----~~~-------------------~~~i~-------- 704 (789)
...+ .. ..++ ..+.+ .++. ..+ +.+++
T Consensus 143 i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~ 222 (546)
T PRK14869 143 IIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAK 222 (546)
T ss_pred HHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHH
Confidence 0000 00 0000 00000 0000 000 00110
Q ss_pred -----------ccccchhhhhhccccccccc-CCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccC
Q 003885 705 -----------DLDIKEEEMEMFVDLHPITN-TSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDF 772 (789)
Q Consensus 705 -----------di~l~~~~~~~~~dL~~im~-~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DL 772 (789)
|..-+...+.....++++|+ +++.++++++++.++.++|.+.+.+++||||+ +|+++|+||++|+
T Consensus 223 ~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~---~g~lvGiit~~dl 299 (546)
T PRK14869 223 ENGVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDE---DGKVVGVISRYHL 299 (546)
T ss_pred hCCCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcC---CCCEEEEEEHHHh
Confidence 00011122445678899999 89999999999999999999999999999998 8999999999999
Q ss_pred cchhh
Q 003885 773 MPEHV 777 (789)
Q Consensus 773 l~~~~ 777 (789)
++...
T Consensus 300 ~~~~~ 304 (546)
T PRK14869 300 LSPVR 304 (546)
T ss_pred hcccc
Confidence 98554
No 90
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.15 E-value=3.7e-10 Score=102.46 Aligned_cols=110 Identities=22% Similarity=0.309 Sum_probs=91.7
Q ss_pred CCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhc
Q 003885 614 GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFA 693 (789)
Q Consensus 614 ~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~ 693 (789)
+++.++++++++.++.+.|.+.+.+.+||+|+ ++++|++++.|+.....+...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------~~~~G~v~~~dl~~~~~~~~~--------------------- 53 (111)
T cd04612 1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDD------GRLVGIVTLADIRRVPAEGRE--------------------- 53 (111)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeC------CeEEEEEEHHHHHHHHhcCcc---------------------
Confidence 35678999999999999999888899999987 689999999999765432100
Q ss_pred cccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCc
Q 003885 694 KAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 773 (789)
Q Consensus 694 ~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl 773 (789)
+ ..++.++|.+++.++.+++++.++++.|.+.+.+++||+|+ +++++|+||++|++
T Consensus 54 ----------~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~~~~G~it~~di~ 109 (111)
T cd04612 54 ----------A-----------TVLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDD---SGRLVGIVSRSDLL 109 (111)
T ss_pred ----------c-----------ccCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcC---CCCEEEEEEHHHhh
Confidence 0 01234567788899999999999999999999999999987 78999999999997
Q ss_pred c
Q 003885 774 P 774 (789)
Q Consensus 774 ~ 774 (789)
+
T Consensus 110 ~ 110 (111)
T cd04612 110 R 110 (111)
T ss_pred h
Confidence 5
No 91
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.15 E-value=1.9e-10 Score=107.65 Aligned_cols=117 Identities=14% Similarity=0.145 Sum_probs=87.4
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
++.++++++++.++++.|.+.+.+.+||+|++ ++++|+++..|+......+.......
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-----~~~~Giv~~~dl~~~~~~~~~~~~~~----------------- 59 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSD-----DNFIGVITAVDLLGEEPIKRIQEGGI----------------- 59 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCC-----CcEEEEEEHHHHhhChhhHHHHHcCC-----------------
Confidence 46789999999999999988888899999986 89999999999975211000000000
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccCCCeee------cCCCCHHHHHHHHHHcCCCeEEEeeCCCCC-CCEEEEE
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTV------VETMSLAKAAVLFRQLALRHLCVVPKTPGR-PPIVGIL 767 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV------~~~~sL~~a~~lf~~~glr~LpVVd~~~~~-~~vvGII 767 (789)
......++++|++++..+ .+++++.++++.|.+.+.+++||+|+ + ++++|+|
T Consensus 60 ------------------~~~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~---~~~~~~G~i 118 (126)
T cd04640 60 ------------------SRSELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDR---EHHQIRGII 118 (126)
T ss_pred ------------------CchheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEEC---CCCEEEEEE
Confidence 000123456776655433 37899999999999999999999997 5 6899999
Q ss_pred ecccCcc
Q 003885 768 TRHDFMP 774 (789)
Q Consensus 768 Tr~DLl~ 774 (789)
|++|+++
T Consensus 119 t~~di~~ 125 (126)
T cd04640 119 STSDIAR 125 (126)
T ss_pred eHHHHhh
Confidence 9999976
No 92
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.15 E-value=5.1e-10 Score=101.96 Aligned_cols=110 Identities=21% Similarity=0.261 Sum_probs=90.5
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
++.++++++++.++.+.|.+.+++.+||+|+ ++++|+++..|++..+......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------~~~~G~v~~~dl~~~~~~~~~~--------------------- 54 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN------EKPVGIITERDLVKKVVSRNLK--------------------- 54 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC------CEEEEEEEHHHHHHHHhhccCC---------------------
Confidence 5678899999999999999888999999996 5899999999998755321000
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
.....+.++|++++.++.+++++.++++.|.+.+.+.+||+|+ + +++|+||++|+++
T Consensus 55 -------------------~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~-~~~Gvi~~~di~~ 111 (112)
T cd04802 55 -------------------PREVPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDD---D-ELVGIVTTTDIVM 111 (112)
T ss_pred -------------------cccCCHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC---C-EEEEEEEhhhhhc
Confidence 0012345677778889999999999999999999999999986 4 8999999999975
No 93
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.15 E-value=4.1e-10 Score=102.37 Aligned_cols=110 Identities=22% Similarity=0.311 Sum_probs=89.9
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
++++++++++++++.+.|.+.+++.+||+|++ .++++|+++..|+.....+... .
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~----~~~~~G~v~~~~l~~~~~~~~~-~-------------------- 56 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGD----LDNIIGVVHVKDLLRALAEGEE-D-------------------- 56 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCC----CceEEEEEEHHHHHHHHHcCCC-c--------------------
Confidence 57889999999999999998888999999873 1689999999999876543110 0
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
..+.++| +.+.++.+++++.+++++|.+.+.+++||+|+ +++++|+||++|+++
T Consensus 57 ----------------------~~~~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~~~~Gvit~~di~~ 110 (111)
T cd04590 57 ----------------------LDLRDLL-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDE---YGGTAGLVTLEDILE 110 (111)
T ss_pred ----------------------CCHHHHh-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEEC---CCCEEEEeEHHHhhc
Confidence 1122334 35678999999999999999999999999997 789999999999986
Q ss_pred h
Q 003885 775 E 775 (789)
Q Consensus 775 ~ 775 (789)
+
T Consensus 111 ~ 111 (111)
T cd04590 111 E 111 (111)
T ss_pred C
Confidence 3
No 94
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.15 E-value=4.5e-10 Score=102.20 Aligned_cols=109 Identities=18% Similarity=0.217 Sum_probs=90.3
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
++++++++++++++.+.|.+.+++.+||+|+ +++.|+++..+++..+.+....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~------~~~~G~v~~~~l~~~~~~~~~~--------------------- 54 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG------DPRLGIVTRTDLLDAVLLDGLP--------------------- 54 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC------CeEEEEEEHHHHHHHHHcCCCC---------------------
Confidence 4568899999999999999888899999986 5799999999998765321100
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
....+.++|++++..+++++++.+++++|.+.+.+.+||+| +++++|+||+.|+++
T Consensus 55 --------------------~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~----~~~~~G~it~~dl~~ 110 (111)
T cd04589 55 --------------------SSTPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVRE----GGEVVGVLEQTDLLS 110 (111)
T ss_pred --------------------CCCCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEee----CCEEEEEEEhHHhhc
Confidence 01234567888889999999999999999999999999998 468999999999975
No 95
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.14 E-value=1.9e-10 Score=132.45 Aligned_cols=117 Identities=18% Similarity=0.201 Sum_probs=101.4
Q ss_pred cceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCccccc
Q 003885 606 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMR 685 (789)
Q Consensus 606 l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~ 685 (789)
..++|+|.++++++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+|+......
T Consensus 87 k~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~-----g~lvGiVt~~DL~~~~~~---------------- 145 (486)
T PRK05567 87 KRSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDEN-----GKLVGIITNRDVRFETDL---------------- 145 (486)
T ss_pred hhhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccC-----CEEEEEEEHHHhhhcccC----------------
Confidence 35678999999999999999999999999999999999986 899999999999431100
Q ss_pred ccchhhhccccCCCCCcccccccchhhhhhccccccccc-CCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEE
Q 003885 686 RFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITN-TSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIV 764 (789)
Q Consensus 686 ~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~-~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vv 764 (789)
..++.++|+ ++++++++++++.++++.|.+.+.+.+||+|+ +++++
T Consensus 146 ------------------------------~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe---~g~lv 192 (486)
T PRK05567 146 ------------------------------SQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDD---NGRLK 192 (486)
T ss_pred ------------------------------CCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CCcEE
Confidence 123456777 67889999999999999999999999999998 88999
Q ss_pred EEEecccCcchh
Q 003885 765 GILTRHDFMPEH 776 (789)
Q Consensus 765 GIITr~DLl~~~ 776 (789)
|+||++|+++..
T Consensus 193 GiIT~~DLl~~~ 204 (486)
T PRK05567 193 GLITVKDIEKAE 204 (486)
T ss_pred EEEEhHHhhhhh
Confidence 999999999754
No 96
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.14 E-value=4.3e-10 Score=101.18 Aligned_cols=111 Identities=28% Similarity=0.391 Sum_probs=93.1
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
++.++++++++.++.+.|.+.++..+||+|++ ++++|+++++|+...+.+.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----~~~~G~v~~~~l~~~~~~~~~~~-------------------- 56 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD-----GRLVGIVTERDLLRALAEGGLDP-------------------- 56 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCC-----CCEEEEEeHHHHHHHHHhccCCc--------------------
Confidence 56788999999999999999888999999986 79999999999987664321000
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
...+.++|..++.++.+++++.++++.|.+.+..++||+|+ +++++|+||++|+++
T Consensus 57 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~---~~~~~G~i~~~dl~~ 112 (113)
T cd02205 57 ---------------------LVTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDD---EGRLVGIVTRSDILR 112 (113)
T ss_pred ---------------------cccHHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcC---CCcEEEEEEHHHhhc
Confidence 01134567778889999999999999999999999999997 789999999999975
No 97
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.14 E-value=2.8e-10 Score=102.94 Aligned_cols=109 Identities=21% Similarity=0.285 Sum_probs=88.5
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
++.++++++++.++.+.|.+++++.+||+|+ ++++|+++..|+...+..... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~------~~~~G~v~~~dl~~~~~~~~~-~-------------------- 54 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD------GRVVGSIDESDLLDALIEGKA-K-------------------- 54 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC------CeeEEEEeHHHHHHHHhcccc-c--------------------
Confidence 5678899999999999999999999999986 689999999999876543110 0
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
....+.++|++++.++++++++.++.++|++ . ..+||+++ +++++|+||++|+++
T Consensus 55 --------------------~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~---~~~~~Gvvt~~di~~ 109 (110)
T cd04609 55 --------------------FSLPVREVMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDE---GGKFVGIITRADLLK 109 (110)
T ss_pred --------------------cCcCHHHHhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEec---CCeEEEEEeHHHhhc
Confidence 0123455777788899999999999999998 3 45889987 789999999999986
Q ss_pred h
Q 003885 775 E 775 (789)
Q Consensus 775 ~ 775 (789)
+
T Consensus 110 ~ 110 (110)
T cd04609 110 Y 110 (110)
T ss_pred C
Confidence 3
No 98
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.12 E-value=4.2e-10 Score=101.53 Aligned_cols=105 Identities=27% Similarity=0.395 Sum_probs=89.4
Q ss_pred CCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhc
Q 003885 614 GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFA 693 (789)
Q Consensus 614 ~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~ 693 (789)
+++++++.+.+++++.+.+.+.+++.+||+|+ ++++|+++..+|+.. . .
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~------~~~~g~v~~~~l~~~--~-----~------------------ 50 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN------GKVVGIVSARDLLGK--D-----P------------------ 50 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC------CEEEEEEEHHHhhcc--C-----c------------------
Confidence 46778999999999999998888889999986 699999999998531 0 0
Q ss_pred cccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCc
Q 003885 694 KAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 773 (789)
Q Consensus 694 ~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl 773 (789)
..++.++|++.+.++.+++++.++++.|++.+.+.+||+|+ +|+++|+||++|++
T Consensus 51 ----------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~g~~~Gvi~~~di~ 105 (107)
T cd04610 51 ----------------------DETVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDE---NNNLVGIITNTDVI 105 (107)
T ss_pred ----------------------cccHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECC---CCeEEEEEEHHHhh
Confidence 01245677788899999999999999999999999999997 78999999999998
Q ss_pred c
Q 003885 774 P 774 (789)
Q Consensus 774 ~ 774 (789)
+
T Consensus 106 ~ 106 (107)
T cd04610 106 R 106 (107)
T ss_pred c
Confidence 5
No 99
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.11 E-value=7.2e-10 Score=100.96 Aligned_cols=110 Identities=17% Similarity=0.235 Sum_probs=87.8
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
++.++++++++.++.+.+.+++...++|.++ ++++|+++.+|+...+.... .+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~------~~~~G~v~~~dl~~~~~~~~--~~------------------- 54 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVMER------GELVGLLTFREVLQAMAQHG--AG------------------- 54 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEeeC------CEEEEEEEHHHHHHHHHhcC--Cc-------------------
Confidence 4678899999999999998777777766654 79999999999976553210 00
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
.....+.++|++.+.++.+++++.+++++|.+.+.+.+||+| +++++|+||++|+++
T Consensus 55 -------------------~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~----~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 55 -------------------VLDTTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD----GGTLLGVISFHDVAK 111 (112)
T ss_pred -------------------hhcCCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE----CCEEEEEEEHHHhhc
Confidence 001234567878888999999999999999999999999998 478999999999976
No 100
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=99.11 E-value=8.9e-10 Score=122.24 Aligned_cols=185 Identities=23% Similarity=0.265 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhccC--CCCCCH
Q 003885 103 FKWTLALLIGVLTGLAAVFCNFFVENIAGFKLLLINNLMLNDRHFMGFVANTSINLGLAILAAILCAYIAPA--AAGSGI 180 (789)
Q Consensus 103 ~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~--a~GsGi 180 (789)
..+...+++|+++|+++.+|++...++.+++.... + .+.. .++ ..++.+++.+ ++.++.|+ ..|.|-
T Consensus 162 ~~~~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~-~----~~~~-~~l----~~~i~gl~~g-~l~~~~p~~~~~g~G~ 230 (355)
T PF00654_consen 162 WELPLFLLLGIICGLLGALFNRLLRWLRKFFRKLK-R----LKIP-PIL----RPVIGGLVIG-LLAFFFPEGSVLGSGY 230 (355)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T----TCHH-HHH----HHHHHHHHHH-HHHHSSGG-SGSSSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c----cccc-hHH----HHHHHHHHHH-HHHHHHhhhcccCCcH
Confidence 34568999999999999999999998887553321 0 0000 111 2233344443 34466788 999999
Q ss_pred HHHHHHHhCCC--CCCccchhhHHHHHHhhhhhhhccccccCchhHHHHHHHHHHHhhccCccccchhhhhhcccCCh--
Q 003885 181 PEVKAYLNGID--AHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKND-- 256 (789)
Q Consensus 181 pev~~~lng~~--~~~~l~~~~l~~K~~~~i~sv~sG~svG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~-- 256 (789)
..++..+++.. ..-..-.-..+.|++.+.+++++|.+.|.-.|++-+|+++|..++.. +..+-.+
T Consensus 231 ~~i~~ll~~~~~~~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~~~~-----------~~~~~~~~~ 299 (355)
T PF00654_consen 231 ELIQSLLSGSPPWFSLGSLLLLFLLKFLATALTLGSGAPGGIFFPSLFIGAALGRLFGAL-----------LGSFFPGIS 299 (355)
T ss_dssp THHHHHCTT----S-HHHHHHHHHHHHHHHHHHHHTT-BSBSHHHHHHHHHHHHHHHHHH-----------HHHH-GGG-
T ss_pred HHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhcCccCCCCEEccHHHHHHHHHHHHHHH-----------HHhhCCCcC
Confidence 99998887631 11112234578999999999999999999999999999999999872 2221111
Q ss_pred -hhhhhHHHhhhhhhhhhhccCcchhhhHHHhHhhhhhhhhhHHHHHHHHHHHHHHH
Q 003885 257 -RDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVL 312 (789)
Q Consensus 257 -~~~r~lv~~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~ 312 (789)
.+...+..+|++|.++++.|+|+..+++.+|.+.+ ...+.+.++++++|..+.
T Consensus 300 ~~~~~~~al~G~~a~~~a~~~~Plt~~vl~~Eltg~---~~~~~p~lia~~~a~~v~ 353 (355)
T PF00654_consen 300 SVDPGVYALVGMAAFLAAVTRAPLTAIVLVLELTGD---FQLLLPLLIAVAVAYLVA 353 (355)
T ss_dssp T-SHHHHHHHHTTHHHHHHCS-HHHHHHHHHHHH-----GGGHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHh
Confidence 14677999999999999999999999999999985 344555666666665544
No 101
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.11 E-value=1e-09 Score=100.58 Aligned_cols=114 Identities=22% Similarity=0.326 Sum_probs=96.9
Q ss_pred eecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccc
Q 003885 609 SDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFK 688 (789)
Q Consensus 609 ~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~ 688 (789)
.++|.++++++.++.++.++...|.++++..+||+++ .+++|+++.+|+...+......
T Consensus 2 ~~~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~------~~l~Giit~~di~~~~~~~~~~--------------- 60 (117)
T COG0517 2 KDIMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDD------GKLVGIITERDILRALAAGGKR--------------- 60 (117)
T ss_pred cccccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC------CEEEEEEEHHHHHHHHhccCCc---------------
Confidence 3456688999999999999999999999999999997 4899999999998876541100
Q ss_pred hhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHH-cCCCeEEEeeCCCCCC-CEEEE
Q 003885 689 AHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQ-LALRHLCVVPKTPGRP-PIVGI 766 (789)
Q Consensus 689 ~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~-~glr~LpVVd~~~~~~-~vvGI 766 (789)
...+.++|.+++.++.+++++.++.++|.+ .+.+++||+|+ ++ +++|+
T Consensus 61 ---------------------------~~~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~---~~~~lvGi 110 (117)
T COG0517 61 ---------------------------LLPVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDD---DGGKLVGI 110 (117)
T ss_pred ---------------------------cccHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEEC---CCCeEEEE
Confidence 003466788888999999999999999999 69999999997 65 99999
Q ss_pred EecccCc
Q 003885 767 LTRHDFM 773 (789)
Q Consensus 767 ITr~DLl 773 (789)
+|++|++
T Consensus 111 vt~~di~ 117 (117)
T COG0517 111 ITLSDIL 117 (117)
T ss_pred EEHHHcC
Confidence 9999984
No 102
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.11 E-value=3.1e-10 Score=120.95 Aligned_cols=114 Identities=18% Similarity=0.216 Sum_probs=98.0
Q ss_pred ccceeecccCC-eEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCccc
Q 003885 605 NLVASDVVSGP-LITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDI 683 (789)
Q Consensus 605 ~l~v~dvM~~~-vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~ 683 (789)
.++++|+|.++ +.+++++++++++.+.|.+.+++.+||+|++ ++++|+|+.+|+...+....
T Consensus 154 ~~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~-----g~~~Givt~~dl~~~~~~~~------------ 216 (268)
T TIGR00393 154 LVKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDEN-----NQLVGVFTDGDLRRALLGGG------------ 216 (268)
T ss_pred hhhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCC-----CCEEEEEEcHHHHHHHhcCC------------
Confidence 47899999998 9999999999999999999899999999986 89999999999977543210
Q ss_pred ccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCE
Q 003885 684 MRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPI 763 (789)
Q Consensus 684 ~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~v 763 (789)
....+++++|.+++.++.+++++.+|+++|.+.+.+++||+|+ ++++
T Consensus 217 ------------------------------~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~l 263 (268)
T TIGR00393 217 ------------------------------SLKSEVRDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDD---HNKV 263 (268)
T ss_pred ------------------------------cccCcHHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECC---CCeE
Confidence 0012356688888899999999999999999999999999997 7899
Q ss_pred EEEEe
Q 003885 764 VGILT 768 (789)
Q Consensus 764 vGIIT 768 (789)
+|+|+
T Consensus 264 ~GvI~ 268 (268)
T TIGR00393 264 LGVLH 268 (268)
T ss_pred EEEEC
Confidence 99985
No 103
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.10 E-value=3e-10 Score=103.18 Aligned_cols=102 Identities=26% Similarity=0.271 Sum_probs=84.9
Q ss_pred ecCCCcHHHHHHHHhhcCC-----CeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhc
Q 003885 619 FSGVEKVGNIMHALRLTRH-----NGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFA 693 (789)
Q Consensus 619 v~~~~~V~~~~~~L~~~~~-----~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~ 693 (789)
+++++++.++.+.|.++++ ..+||+|++ ++++|+|+.+++... . .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-----~~~~G~v~~~~l~~~--~-----~------------------ 51 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEE-----GRLLGVVSLRDLLLA--D-----P------------------ 51 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCC-----CCEEEEEEHHHHhcC--C-----C------------------
Confidence 5788999999999987763 679999976 899999999888431 0 0
Q ss_pred cccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCc
Q 003885 694 KAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 773 (789)
Q Consensus 694 ~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl 773 (789)
...+.++|++++.++.+++++.++++.|.+.+.+++||+|+ +++++|+||++|++
T Consensus 52 ----------------------~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~~~~Gvit~~dll 106 (109)
T cd04606 52 ----------------------DTPVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDE---EGRLVGIITVDDVI 106 (109)
T ss_pred ----------------------cchHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECC---CCcEEEEEEhHHhh
Confidence 01245577778899999999999999999999999999997 78999999999998
Q ss_pred ch
Q 003885 774 PE 775 (789)
Q Consensus 774 ~~ 775 (789)
+.
T Consensus 107 ~~ 108 (109)
T cd04606 107 DV 108 (109)
T ss_pred hh
Confidence 64
No 104
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.09 E-value=7.9e-10 Score=99.72 Aligned_cols=100 Identities=18% Similarity=0.085 Sum_probs=85.5
Q ss_pred EEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcccc
Q 003885 617 ITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAG 696 (789)
Q Consensus 617 vtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 696 (789)
++++++++++++.+.+.+.+++.+||+|+ ++++|+++.+|+.....
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~------~~~~G~v~~~~l~~~~~---------------------------- 49 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY------NKFLGAVYLKDIENATY---------------------------- 49 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC------CEEEEEEEHHHHhhhcc----------------------------
Confidence 46789999999999999989999999986 68999999999854210
Q ss_pred CCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 697 SGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 697 ~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
.++.++|.+.+.++++++++.++++.|.+.+.+.+||+| +++++|+||++|+++
T Consensus 50 --------------------~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~----~~~~iGvit~~dl~~ 103 (104)
T cd04594 50 --------------------GDVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD----DGKFKGIVTLDSILD 103 (104)
T ss_pred --------------------cchhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE----CCEEEEEEEHHHhhc
Confidence 013446777888999999999999999999999999997 478999999999875
No 105
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.09 E-value=3.5e-10 Score=129.77 Aligned_cols=116 Identities=14% Similarity=0.104 Sum_probs=96.6
Q ss_pred cccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchh
Q 003885 611 VVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAH 690 (789)
Q Consensus 611 vM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~ 690 (789)
.|.++++++++++++.++.+.|.+++++.+||+|++ ...++++|+|+.+|+.....
T Consensus 105 gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~--~~~GklvGIVT~~DL~~v~~---------------------- 160 (505)
T PLN02274 105 GFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETG--TMGSKLLGYVTKRDWDFVND---------------------- 160 (505)
T ss_pred cccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCC--CcCCeEEEEEEHHHHhhccc----------------------
Confidence 377889999999999999999999999999999872 01279999999999943210
Q ss_pred hhccccCCCCCcccccccchhhhhhcccccccccCC--CeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEe
Q 003885 691 DFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTS--PYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILT 768 (789)
Q Consensus 691 d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~--p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIIT 768 (789)
....+.++|++. ..++.+++++.+++++|.+.+.+.+||||+ +++++|+||
T Consensus 161 ------------------------~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~---~g~LvGvIT 213 (505)
T PLN02274 161 ------------------------RETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE---DGELVDLVT 213 (505)
T ss_pred ------------------------cCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CCeEEEEEE
Confidence 012355677766 679999999999999999999999999997 789999999
Q ss_pred cccCcchhh
Q 003885 769 RHDFMPEHV 777 (789)
Q Consensus 769 r~DLl~~~~ 777 (789)
++|+++...
T Consensus 214 r~DIlk~~~ 222 (505)
T PLN02274 214 RTDVKRVKG 222 (505)
T ss_pred HHHHHHHhh
Confidence 999997543
No 106
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.08 E-value=8.1e-10 Score=101.98 Aligned_cols=119 Identities=23% Similarity=0.315 Sum_probs=93.0
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
++.+++++.++.++.+.+.+++++.+||+|++ ++++|+++.+++........ .....
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~-----~~~~G~v~~~~l~~~~~~~~-~~~~~----------------- 58 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEE-----GRLVGIVTDRDLRDASPSPF-TTLSE----------------- 58 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCC-----CcEEEEEEHHHHHHHhhhhc-ccchh-----------------
Confidence 56788999999999999999899999999986 89999999999976542210 00000
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
.+. +.....+++++|++.+.++.+++++.++++.|.+.+..++||+| +++++|+||.+|+++
T Consensus 59 ---------~~~-----~~~~~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~----~~~~~Gvv~~~di~~ 120 (121)
T cd04584 59 ---------HEL-----YLLLKMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVE----DGRLVGIITETDLLR 120 (121)
T ss_pred ---------hhh-----hhhcCcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEee----CCEEEEEEEHHHhhc
Confidence 000 00112345678888899999999999999999999999999998 378999999999976
No 107
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.07 E-value=8.6e-10 Score=101.89 Aligned_cols=119 Identities=23% Similarity=0.287 Sum_probs=92.5
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
++.++++++++.++.+.|.+.++..+||+|+ ++++|+++.+++...+.... ..+.. . ..
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~------~~~~G~v~~~~l~~~~~~~~-~~~~~----------~--~~-- 60 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG------GKLVGIVTEKDIADALRSFR-PLVRD----------R--HQ-- 60 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC------CEEEEEEchHHHHHhhhhhh-hcccc----------h--hh--
Confidence 5678999999999999998888899999996 79999999999977654210 00000 0 00
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
+......++.++|++++.++.+++++.+++++|.+.+.+++||+|+ ++++|+||++|+++
T Consensus 61 ----------------~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~~~~Gvi~~~dl~~ 120 (121)
T cd04633 61 ----------------ERRIRNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD----GKLVGIVTRTDILR 120 (121)
T ss_pred ----------------hhhhhccCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC----CEEEEEEEHHHhhc
Confidence 0000123456678888999999999999999999999999999983 68999999999986
No 108
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=99.07 E-value=3.3e-09 Score=120.55 Aligned_cols=181 Identities=19% Similarity=0.228 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHH
Q 003885 106 TLALLIGVLTGLAAVFCNFFVENIAGFKLLLINNLMLNDRHFMGFVANTSINLGLAILAAILCAYIAPAAAGSGIPEVKA 185 (789)
Q Consensus 106 ~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~ 185 (789)
...+++|++.|+++.++...+....+++ .+ ...++.+.. .+.+.+. .+...+.|+..|.|...+..
T Consensus 236 ~~~~~lGii~G~~g~~~~~~~~~~~~~~--------~~--~~~~~~~~~---~~~g~l~-g~~~l~~P~~lg~G~~~~~~ 301 (443)
T COG0038 236 LLYLVLGIIAGLFGVLLSRLLALSRRFF--------RR--LPLPPLLRP---ALGGLLV-GALGLLFPEVLGNGYGLIQL 301 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hc--CcchHHHHH---HHHHHHH-HHHHHhchhhhCCCccHHHH
Confidence 4678999999999988887775543222 11 112222222 2223333 34557789999999888888
Q ss_pred HHhCCCCCCcc-chhhHHHHHHhhhhhhhccccccCchhHHHHHHHHHHHhhccCccccchhhhhhcccC-ChhhhhhHH
Q 003885 186 YLNGIDAHSIL-APSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFK-NDRDRRDLI 263 (789)
Q Consensus 186 ~lng~~~~~~l-~~~~l~~K~~~~i~sv~sG~svG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~-~~~~~r~lv 263 (789)
..++.- ... ..-.++.|++.+.++++||.+.|...|+.-+|+++|..+++... ..+. +..+.-.++
T Consensus 302 ~~~~~~--~~~~l~~l~~~K~l~t~~s~gSG~~GGif~Psl~iGa~lG~~~g~~~~----------~~~~~~~~~~~~~a 369 (443)
T COG0038 302 ALAGEG--GLLVLLLLFLLKLLATLLSYGSGAPGGIFAPSLFIGAALGLAFGALLG----------LLFPPSILEPGLFA 369 (443)
T ss_pred HHccCc--cHHHHHHHHHHHHHHHHHHHhcCCCcceehHHHHHHHHHHHHHHHHHH----------hhcCccccchHHHH
Confidence 887631 122 35678999999999999999999999999999999999997211 1111 234445799
Q ss_pred HhhhhhhhhhhccCcchhhhHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 003885 264 TCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGF 315 (789)
Q Consensus 264 ~~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~l 315 (789)
.+||+|-++++-|+|++++++++|++.. ..+.+..+.+|.+++.+.+.+
T Consensus 370 l~Gm~a~la~~~~aPlta~vlv~EmTg~---~~~~l~ll~a~~ia~~~~~~~ 418 (443)
T COG0038 370 LLGMAAFLAATTRAPLTAIVLVLEMTGN---YQLLLPLLIACLIAYLVSRLL 418 (443)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhCC---cchHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999986 456677777888887776653
No 109
>PRK11573 hypothetical protein; Provisional
Probab=99.07 E-value=7.1e-10 Score=124.83 Aligned_cols=132 Identities=17% Similarity=0.218 Sum_probs=108.0
Q ss_pred ccccceeecccC--CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCC
Q 003885 603 MKNLVASDVVSG--PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTG 680 (789)
Q Consensus 603 l~~l~v~dvM~~--~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~ 680 (789)
+++.+|+|+|++ ++++++.+.+++++.+.+.+++|+.+||.+++. +.++|+|..+|++..+.++. +
T Consensus 184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~----D~IiGiv~~kDll~~~~~~~---~----- 251 (413)
T PRK11573 184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSL----DDAISMLRVREAYRLMTEKK---E----- 251 (413)
T ss_pred cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCC----CceEEEEEHHHHHHHhhccC---c-----
Confidence 578899999987 799999999999999999999999999998642 68999999999976543210 0
Q ss_pred cccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCC
Q 003885 681 SDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGR 760 (789)
Q Consensus 681 ~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~ 760 (789)
... .++.+++ ++|+.|++++++.++++.|++.+.+-..|+|+ .
T Consensus 252 ------~~~---------------------------~~l~~~~-r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE---y 294 (413)
T PRK11573 252 ------FTK---------------------------ENMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE---Y 294 (413)
T ss_pred ------CCH---------------------------HHHHhhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEec---C
Confidence 000 0122333 46889999999999999999999988889998 8
Q ss_pred CCEEEEEecccCcchhhhccCcc
Q 003885 761 PPIVGILTRHDFMPEHVLGLYPH 783 (789)
Q Consensus 761 ~~vvGIITr~DLl~~~~~~~~~~ 783 (789)
|...|+||.+|++++...++..+
T Consensus 295 G~~~GiVTleDilEeivGei~de 317 (413)
T PRK11573 295 GDIQGLVTVEDILEEIVGDFTTS 317 (413)
T ss_pred CCeEEEeeHHHHHHHHhCCCCcc
Confidence 99999999999999988776543
No 110
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.05 E-value=1.1e-09 Score=100.87 Aligned_cols=113 Identities=19% Similarity=0.276 Sum_probs=89.7
Q ss_pred CeEEecCCCcHHHHHHHHhhcC-CCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhc
Q 003885 615 PLITFSGVEKVGNIMHALRLTR-HNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFA 693 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~-~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~ 693 (789)
++.+++++++++++.+.++..+ ++.+||+|+ ++++|+|+.+|+...+.+.. ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~------~~~~G~v~~~~l~~~~~~~~-~~------------------- 55 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD------GRPVGLIMREALMELLSTPY-GR------------------- 55 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC------CeeEEEEEHHHHHHHHhchh-hH-------------------
Confidence 5667899999999999998776 889999997 68999999999976554210 00
Q ss_pred cccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeE---EEeeCCCCCCCEEEEEecc
Q 003885 694 KAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHL---CVVPKTPGRPPIVGILTRH 770 (789)
Q Consensus 694 ~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~L---pVVd~~~~~~~vvGIITr~ 770 (789)
+.....++.++|++++.++.+++++.++++.|.+.+.+++ +||++ +++++|+||++
T Consensus 56 ------------------~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~---~~~~~Gvvs~~ 114 (119)
T cd04598 56 ------------------ALYGKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTE---EGRYLGIGTVK 114 (119)
T ss_pred ------------------HHHcCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEee---CCeEEEEEEHH
Confidence 0000124567888899999999999999999999987544 68887 78999999999
Q ss_pred cCcc
Q 003885 771 DFMP 774 (789)
Q Consensus 771 DLl~ 774 (789)
|+++
T Consensus 115 di~~ 118 (119)
T cd04598 115 DLLR 118 (119)
T ss_pred HHhc
Confidence 9975
No 111
>PRK03655 putative ion channel protein; Provisional
Probab=99.04 E-value=4.8e-09 Score=118.00 Aligned_cols=172 Identities=13% Similarity=0.099 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHH
Q 003885 104 KWTLALLIGVLTGLAAVFCNFFVENIAGFKLLLINNLMLNDRHFMGFVANTSINLGLAILAAILCAYIAPAAAGSGIPEV 183 (789)
Q Consensus 104 ~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev 183 (789)
.|...+++|++.|+++.+|+.......++.... +. +++. ..+.+++.+.+.....|...|+|..++
T Consensus 222 ~~~~~l~lgi~~gl~G~lf~~~~~~~~~~~~~~------~~----p~~~----~~lgGl~vg~l~l~~~~~~~g~Gy~~i 287 (414)
T PRK03655 222 DILSGAIVAAIAIAAGMVAVWCLPRLHALMHRL------KN----PVLV----LGIGGFILGILGVIGGPLTLFKGLDEM 287 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cc----chHH----HHHHHHHHHHHHHHhCCccccCCHHHH
Confidence 455678899999999999988776665443210 11 1211 233445555555445688899999999
Q ss_pred HHHHhCCCCCCccchhhHHHHHHhhhhhhhccccccCchhHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhHH
Q 003885 184 KAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLI 263 (789)
Q Consensus 184 ~~~lng~~~~~~l~~~~l~~K~~~~i~sv~sG~svG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv 263 (789)
+..+++.+.+-..-.-..+.|++.+.+|+++|.+.|...|+.-+||++|..+++ ++ ++.+....+
T Consensus 288 ~~~~~~~~~~~~~ll~l~l~K~lat~ls~~sG~~GGiF~PsL~iGA~~G~~~~~-----------l~----p~~~~~~~v 352 (414)
T PRK03655 288 QQMAANQAFSASDYFLLAVVKLAALVVAAASGFRGGRIFPAVFVGVALGLMLHA-----------HV----PAVPAAITV 352 (414)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHHHHHHccCCCCceehHHHHHHHHHHHHHHH-----------hc----cCCChHHHH
Confidence 988876222211112246799999999999999999999999999999999987 22 234566788
Q ss_pred Hhhhhhhhhhhcc----CcchhhhHHHhHhhhhhhhhhHHHHHHHHHHHHHHH
Q 003885 264 TCGAAAGVAGAFR----APVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVL 312 (789)
Q Consensus 264 ~~GaAAGvaaaF~----APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~ 312 (789)
+||++|-++++-+ ||+.+++.++|++ ..+.+.++++++++.
T Consensus 353 ~~~m~a~la~vtr~p~~sp~ta~viv~em~--------~~~l~~~~~~~~~~~ 397 (414)
T PRK03655 353 SCAILGIVLVVTRDGWLSLFMAAVVVPDTT--------LLPLLCIVMLPAWLL 397 (414)
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHHhcch--------HHHHHHHHHHHHHHH
Confidence 9999999999999 6999999999987 334455566666544
No 112
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.03 E-value=2.3e-09 Score=102.94 Aligned_cols=142 Identities=23% Similarity=0.291 Sum_probs=96.4
Q ss_pred CCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhc
Q 003885 614 GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFA 693 (789)
Q Consensus 614 ~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~ 693 (789)
++++++++++++.++.+.|.+++++.+||+|+ ++++|++++.|+...+.......................++.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~------~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (143)
T cd04634 1 KNPITCNADDTISDAARLLRENKISGAPVLDG------GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFI 74 (143)
T ss_pred CCcEEecCCCCHHHHHHHHHHcCCCcceEeEC------CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchhee
Confidence 35778999999999999999999999999986 689999999999877653221000000000000000000000
Q ss_pred cccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCc
Q 003885 694 KAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 773 (789)
Q Consensus 694 ~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl 773 (789)
+.++.....++ ....++.++|++++.++.+++++.++++.|.+.+.+++||+++ ++++|+||++|++
T Consensus 75 --------~~~~~~~~~~~-~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~----~~~~Gvvt~~dl~ 141 (143)
T cd04634 75 --------NWEETKRALTD-AGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED----GRLVGIVTRGDII 141 (143)
T ss_pred --------ehHHHHHHHHH-HhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC----CEEEEEEEHHHhh
Confidence 00000000000 0134567788899999999999999999999999999999984 6899999999997
Q ss_pred c
Q 003885 774 P 774 (789)
Q Consensus 774 ~ 774 (789)
+
T Consensus 142 ~ 142 (143)
T cd04634 142 E 142 (143)
T ss_pred c
Confidence 5
No 113
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.03 E-value=1.8e-09 Score=97.43 Aligned_cols=104 Identities=24% Similarity=0.328 Sum_probs=87.5
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
++.+++.++++.++.+.+.+.+++.+||+|++ ++++|+++++++.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----~~~~g~v~~~~l~~~~~-------------------------- 50 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKS-----GELVGIITRKDLLRNPE-------------------------- 50 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCC-----CcEEEEEEHHHHHhccc--------------------------
Confidence 46788899999999999998889999999986 78999999999953100
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
...+.++|++.+.++.+++++.++++.|++.+.+.+||+|+ ++++|+||++|+++
T Consensus 51 ---------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~----~~~~G~it~~d~~~ 105 (106)
T cd04638 51 ---------------------EEQLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD----GKLVGIVTVADIVR 105 (106)
T ss_pred ---------------------cchHHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC----CEEEEEEEHHHhhc
Confidence 01134567778889999999999999999999999999984 58999999999875
No 114
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=98.99 E-value=5.2e-09 Score=119.24 Aligned_cols=193 Identities=19% Similarity=0.167 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHH
Q 003885 103 FKWTLALLIGVLTGLAAVFCNFFVENIAGFKLLLINNLMLNDRHFMGFVANTSINLGLAILAAILCAYIAPAAAGSGIPE 182 (789)
Q Consensus 103 ~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipe 182 (789)
..+...+++|+++|+++.+|++...++++++.... .....++. .++.+++.+.+ .++.|...|+|-..
T Consensus 205 ~~l~~~i~lGi~~Gl~g~lf~~~~~~~~~~~~~~~--------~~~~~~~~---~~l~~l~~~~l-~~~~p~~~~~g~~~ 272 (445)
T cd03684 205 FELIPFILLGIFGGLYGAFFIKANIKWARFRKKSL--------LKRYPVLE---VLLVALITALI-SFPNPYTRLDMTEL 272 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------cchhHHHH---HHHHHHHHHHH-HhChHHHccchhhH
Confidence 34557899999999999999999988877653221 00011111 22233333333 45679999998777
Q ss_pred HHHHHhCCCC---------------CC-ccc----hhhHHHHHHhhhhhhhccccccCchhHHHHHHHHHHHhhccCccc
Q 003885 183 VKAYLNGIDA---------------HS-ILA----PSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKK 242 (789)
Q Consensus 183 v~~~lng~~~---------------~~-~l~----~~~l~~K~~~~i~sv~sG~svG~EGP~vhiGa~igs~l~~~~s~~ 242 (789)
++..+++... .. ... .-.++.|++.+.+++++|.+.|.-.|+.-+||++|..++...+..
T Consensus 273 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~K~~~t~lt~gsG~~GG~f~P~l~iGA~~G~~~g~~~~~~ 352 (445)
T cd03684 273 LELLFNECEPGDDNSLCCYRDPPAGDGVYKALWSLLLALIIKLLLTIFTFGIKVPAGIFVPSMAVGALFGRIVGILVEQL 352 (445)
T ss_pred HHHHHhcCCCcccccccccccccCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcceeHHHHHHHHHHhHHHHHHHHHH
Confidence 7776654210 00 111 234689999999999999999999999999999999998731100
Q ss_pred cchhhhhhc---ccC------ChhhhhhHHHhhhhhhhhhhccCcchhhhHHHhHhhhhhhhhhHHHHHHHHHHHHHHHH
Q 003885 243 YHLTWRWLR---YFK------NDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLR 313 (789)
Q Consensus 243 ~~l~~~~~~---~f~------~~~~~r~lv~~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~ 313 (789)
. .+.. +|. ++.+.-.++.+|+||-+|++.|+|+.++++.+|.+.+ ...+.+.++++.+|..+.+
T Consensus 353 ~----~~~p~~~~~~~~~~~~~~~~~~~~alvGmaa~~a~~~raPlt~ivlv~ElTg~---~~~l~pl~ia~~iA~~vs~ 425 (445)
T cd03684 353 A----YSYPDSIFFACCTAGPSCITPGLYAMVGAAAFLGGVTRMTVSLVVIMFELTGA---LNYILPLMIAVMVSKWVAD 425 (445)
T ss_pred H----hhCCcccccccccCCCCccCchHHHHHHHHHHhcchhccchhhhheeeeccCC---cccHHHHHHHHHHHHHHHH
Confidence 0 0000 011 1123457899999999999999999999999999975 3456677777777777766
Q ss_pred H
Q 003885 314 G 314 (789)
Q Consensus 314 ~ 314 (789)
.
T Consensus 426 ~ 426 (445)
T cd03684 426 A 426 (445)
T ss_pred H
Confidence 4
No 115
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=98.95 E-value=1.4e-09 Score=120.92 Aligned_cols=124 Identities=18% Similarity=0.184 Sum_probs=107.5
Q ss_pred ccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccc
Q 003885 605 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIM 684 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~ 684 (789)
..+++++|+.|.+++++..++.++...|.+.+.+..-|+|++ +.+.|+|+++|+.......-
T Consensus 148 ~trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~-----~~~~GIvT~~dl~~~v~~~g------------- 209 (610)
T COG2905 148 LTRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDS-----GPLLGIVTRKDLRSRVIADG------------- 209 (610)
T ss_pred HHHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCC-----CCccceeehHHHHHHHHhcC-------------
Confidence 357899999999999999999999999999999988888876 88999999999976543210
Q ss_pred cccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEE
Q 003885 685 RRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIV 764 (789)
Q Consensus 685 ~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vv 764 (789)
++....+.++|+.++++|..++.+-+|+-+|.+.+++|+||++ +|+++
T Consensus 210 ----------------------------~~~~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e----~gq~~ 257 (610)
T COG2905 210 ----------------------------RSKTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE----DGQPL 257 (610)
T ss_pred ----------------------------CCcccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeec----CCeee
Confidence 1123467889999999999999999999999999999999998 58999
Q ss_pred EEEecccCcchhhh
Q 003885 765 GILTRHDFMPEHVL 778 (789)
Q Consensus 765 GIITr~DLl~~~~~ 778 (789)
||||-+||++....
T Consensus 258 Gilt~~dIl~l~s~ 271 (610)
T COG2905 258 GILTLTDILRLFSQ 271 (610)
T ss_pred EEeeHHHHHHhhCC
Confidence 99999999986553
No 116
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.92 E-value=7.5e-09 Score=117.54 Aligned_cols=130 Identities=21% Similarity=0.299 Sum_probs=107.8
Q ss_pred ccccceeecccC--CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCC
Q 003885 603 MKNLVASDVVSG--PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTG 680 (789)
Q Consensus 603 l~~l~v~dvM~~--~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~ 680 (789)
+++.+|+++|++ ++..++.+.+++++.+.+.+++|+.+||.+++ .+.++|+|..+||+..+.+..- .
T Consensus 203 l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~----~D~iiGiv~~Kdll~~~~~~~~--~----- 271 (429)
T COG1253 203 LDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGD----LDNIIGIVHVKDLLRALLDGQS--D----- 271 (429)
T ss_pred cCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCC----CCcEEEEEEHHHHHHHHhcCcc--c-----
Confidence 678899999987 79999999999999999999999999999943 3789999999999877654210 0
Q ss_pred cccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCC
Q 003885 681 SDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGR 760 (789)
Q Consensus 681 ~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~ 760 (789)
.+....+ ++|+.|++++++.++++.|++.+.+-..|+|+ .
T Consensus 272 ------------------------------------~~~~~~~-~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE---y 311 (429)
T COG1253 272 ------------------------------------LDLRVLV-RPPLFVPETLSLSDLLEEFREERTHMAIVVDE---Y 311 (429)
T ss_pred ------------------------------------cchhhcc-cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEc---C
Confidence 0001111 27889999999999999999999998889998 8
Q ss_pred CCEEEEEecccCcchhhhccCcc
Q 003885 761 PPIVGILTRHDFMPEHVLGLYPH 783 (789)
Q Consensus 761 ~~vvGIITr~DLl~~~~~~~~~~ 783 (789)
|.+.|+||.+|++++...++...
T Consensus 312 G~~~GlVTleDIiEeIvGei~de 334 (429)
T COG1253 312 GGVEGLVTLEDIIEEIVGEIPDE 334 (429)
T ss_pred CCeEEEeEHHHHHHHHhCCCcCc
Confidence 99999999999999888776543
No 117
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.89 E-value=1.2e-08 Score=97.04 Aligned_cols=116 Identities=14% Similarity=0.095 Sum_probs=79.6
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+..|++..+.......... ..+.
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~-----g~l~Givt~~Dl~~~~~~~~~~~~~~-----------~~~~-- 63 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSD-----DFLEGILTLGDIQRFLFTNKTTRVQP-----------EDET-- 63 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCC-----CeEEEEEEHHHHHHHHhhcccccccc-----------chhh--
Confidence 57889999999999999998899999999987 89999999999988765322110000 0000
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeC
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPK 756 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~ 756 (789)
.. -++..+ .+......+.+.|..++.++.+++++.+|+++|.+.+.+++||+|+
T Consensus 64 -~~-----~~~~~v--~~i~~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~ 117 (133)
T cd04592 64 -KQ-----TNTCLV--SSVCTKGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR 117 (133)
T ss_pred -cc-----cccccH--HHHhhhhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence 00 000000 0000001122334567889999999999999999999999999987
No 118
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=98.88 E-value=3.2e-08 Score=113.47 Aligned_cols=168 Identities=18% Similarity=0.225 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHH
Q 003885 102 VFKWTLALLIGVLTGLAAVFCNFFVENIAGFKLLLINNLMLNDRHFMGFVANTSINLGLAILAAILCAYIAPAAAGSGIP 181 (789)
Q Consensus 102 ~~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGip 181 (789)
+..+.+.+++|+++|+++.+|+....++++++.... .... ...+...++.+.+.+.+. + +
T Consensus 274 ~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~-----~~~~----~~~~l~~~lv~~~~~~~~-~----------~ 333 (466)
T cd03685 274 YFELIPFMLIGVIGGLLGALFNHLNHKVTRFRKRIN-----HKGK----LLKVLEALLVSLVTSVVA-F----------P 333 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cccc----hhHHHHHHHHHHHHHHHH-H----------H
Confidence 344568999999999999999999988876543210 0011 111222222222222221 1 0
Q ss_pred HHHHHHhCCCCCCccchhhHHHHHHhhhhhhhccccccCchhHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhh
Q 003885 182 EVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRD 261 (789)
Q Consensus 182 ev~~~lng~~~~~~l~~~~l~~K~~~~i~sv~sG~svG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~ 261 (789)
..-.-.++.|++.+.+++++|.+.|.-.|+.-+||++|..++..... ++.. ...+--.
T Consensus 334 -------------~~l~~~~~~k~l~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~-------~~~~--~~~~~~~ 391 (466)
T cd03685 334 -------------QTLLIFFVLYYFLACWTFGIAVPSGLFIPMILIGAAYGRLVGILLGS-------YFGF--TSIDPGL 391 (466)
T ss_pred -------------HHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHH-------Hccc--cCCCchH
Confidence 01123457799999999999999999999999999999999872110 1111 2334567
Q ss_pred HHHhhhhhhhhhhccCcchhhhHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 003885 262 LITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRG 314 (789)
Q Consensus 262 lv~~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~ 314 (789)
++.+||||-+|++.|+|+.++++.+|.+.+ ...+.+.++++++|..+.+.
T Consensus 392 ~aliGmaa~lag~~raPlt~iviv~ElTg~---~~~l~pl~ia~~iA~~va~~ 441 (466)
T cd03685 392 YALLGAAAFLGGVMRMTVSLTVILLELTNN---LTYLPPIMLVLMIAKWVGDY 441 (466)
T ss_pred HHHHHHHHHHhHHhhhhHHHHHHhhhhcCC---hhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987 34566677777777766654
No 119
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.83 E-value=5.2e-09 Score=117.42 Aligned_cols=120 Identities=20% Similarity=0.195 Sum_probs=103.1
Q ss_pred cceeecccCCeEEecCCCcHHHHHHHHhhc-----CCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCC
Q 003885 606 LVASDVVSGPLITFSGVEKVGNIMHALRLT-----RHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTG 680 (789)
Q Consensus 606 l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~-----~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~ 680 (789)
-+++.+|+.+.++++++.|++++++.+++. ....++|+|++ +++.|+|+.++|+.. +
T Consensus 132 ~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~-----~~L~Gvvsl~~Ll~a--~----------- 193 (451)
T COG2239 132 DTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEK-----GKLLGVVSLRDLLTA--E----------- 193 (451)
T ss_pred hhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCc-----cceEEEeeHHHHhcC--C-----------
Confidence 578999999999999999999999999853 45678899987 899999999998431 0
Q ss_pred cccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCC
Q 003885 681 SDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGR 760 (789)
Q Consensus 681 ~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~ 760 (789)
....++++|++.+++|.+++..+++.++|+++++-++||||+ +
T Consensus 194 ----------------------------------~~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~---~ 236 (451)
T COG2239 194 ----------------------------------PDELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDE---D 236 (451)
T ss_pred ----------------------------------cHhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECC---C
Confidence 012457789999999999999999999999999999999998 8
Q ss_pred CCEEEEEecccCcchhhhcc
Q 003885 761 PPIVGILTRHDFMPEHVLGL 780 (789)
Q Consensus 761 ~~vvGIITr~DLl~~~~~~~ 780 (789)
++++|+||..|+++...++.
T Consensus 237 ~~LiG~itiDDiidvi~eEa 256 (451)
T COG2239 237 NRLIGIITIDDIIDVIEEEA 256 (451)
T ss_pred CceeeeeeHHHHHHHHHHHH
Confidence 99999999999998665543
No 120
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.80 E-value=1.3e-08 Score=108.22 Aligned_cols=129 Identities=26% Similarity=0.353 Sum_probs=108.9
Q ss_pred ccccceeecccC--CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCc-cccccccC
Q 003885 603 MKNLVASDVVSG--PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKK-FTKQKTMT 679 (789)
Q Consensus 603 l~~l~v~dvM~~--~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~-~~~~~~~~ 679 (789)
+++++|+|+|.+ ++..++.+++.+++++.+.++.|+.+||..++. ...+|++..+|+++++.++. |.
T Consensus 197 Le~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~----DnIiGvlh~r~llr~l~e~~~~~------ 266 (423)
T COG4536 197 LENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDL----DNIIGVLHVRDLLRLLNEKNEFT------ 266 (423)
T ss_pred cccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCCh----hHhhhhhhHHHHHHHhhccCccc------
Confidence 678999999987 799999999999999999999999999998753 56999999999999887633 21
Q ss_pred CcccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCC
Q 003885 680 GSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPG 759 (789)
Q Consensus 680 ~~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~ 759 (789)
-.|+.+. -..|+.|++.+++.+-+..|++.+-+.-.|||+
T Consensus 267 ---------k~d~~~~----------------------------a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDE--- 306 (423)
T COG4536 267 ---------KEDILRA----------------------------ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDE--- 306 (423)
T ss_pred ---------HhHHHHH----------------------------hcCCeecCCCCcHHHHHHHHHHhcceEEEEEec---
Confidence 1122111 147899999999999999999999999999999
Q ss_pred CCCEEEEEecccCcchhhhccC
Q 003885 760 RPPIVGILTRHDFMPEHVLGLY 781 (789)
Q Consensus 760 ~~~vvGIITr~DLl~~~~~~~~ 781 (789)
-|.+.|+||.+|++++...+..
T Consensus 307 YG~i~GLVTLEDIlEEIVGdft 328 (423)
T COG4536 307 YGDIQGLVTLEDILEEIVGDFT 328 (423)
T ss_pred cCcEEeeeeHHHHHHHHhcccc
Confidence 8999999999999998776544
No 121
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=98.79 E-value=5.1e-08 Score=110.38 Aligned_cols=170 Identities=16% Similarity=0.114 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHH
Q 003885 103 FKWTLALLIGVLTGLAAVFCNFFVENIAGFKLLLINNLMLNDRHFMGFVANTSINLGLAILAAILCAYIAPAAAGSGIPE 182 (789)
Q Consensus 103 ~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipe 182 (789)
..+.+.+++|+++|+++.+|++...++.+++...... .. ....+ ..+++.+.+.+.+. +
T Consensus 234 ~~l~~~illGv~~G~~g~~f~~~~~~~~~~~~~~~~~---~~-~~~~~----~~~~~~~~i~~~~~-~------------ 292 (416)
T cd01036 234 YEFIPTVVIGVICGLLAALFVRLSIIFLRWRRRLLFR---KT-ARYRV----LEPVLFTLIYSTIH-Y------------ 292 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cc-cchhH----HHHHHHHHHHHHHH-H------------
Confidence 3455789999999999999999998887765322110 00 11111 12223333333222 2
Q ss_pred HHHHHhCCCCCCccchhhHHHHHHhhhhhhhccccccCchhHHHHHHHHHHHhhccCccccchhhhhhccc------CCh
Q 003885 183 VKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYF------KND 256 (789)
Q Consensus 183 v~~~lng~~~~~~l~~~~l~~K~~~~i~sv~sG~svG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f------~~~ 256 (789)
. ..-.-.++.|++.+.+++++|.+.|.-.|+.-+||++|..++..-+. +.... ...
T Consensus 293 ----~-------~~l~~~~~~K~~~t~~t~~sg~pGG~f~Psl~iGA~~G~~~g~~~~~-------~~~~~~~~~~~~~~ 354 (416)
T cd01036 293 ----A-------PTLLLFLLIYFWMSALAFGIAVPGGTFIPSLVIGAAIGRLVGLLVHR-------IAVAGIGAESATLW 354 (416)
T ss_pred ----H-------HHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHH-------HccccccccccCCc
Confidence 0 01134578999999999999999999999999999999999872111 11100 012
Q ss_pred hhhhhHHHhhhhhhhhhhccCcchhhhHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 003885 257 RDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRG 314 (789)
Q Consensus 257 ~~~r~lv~~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~ 314 (789)
.+-..++.+|+||-++++.|+|+.++++.+|.+.+ ...+.+.++++.+|..+.+.
T Consensus 355 ~~~~~~alvGmaa~l~~~~r~Plt~~vi~~ElTg~---~~~l~pl~ia~~ia~~v~~~ 409 (416)
T cd01036 355 ADPGVYALIGAAAFLGGTTRLTFSICVIMMELTGD---LHHLLPLMVAILIAKAVADA 409 (416)
T ss_pred cChHHHHHHHHHHHhhhhhcchHhhhhheeeccCC---hhhHHHHHHHHHHHHHHHHh
Confidence 34567999999999999999999999999999976 34556666666666665553
No 122
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.64 E-value=2.8e-08 Score=79.49 Aligned_cols=54 Identities=30% Similarity=0.414 Sum_probs=50.7
Q ss_pred cccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcchh
Q 003885 720 HPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEH 776 (789)
Q Consensus 720 ~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~~ 776 (789)
+++|+++++++++++++.++++.|++.+.+++||+|+ +++++|+||++|+++..
T Consensus 2 ~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~---~~~~~G~is~~dl~~~l 55 (57)
T PF00571_consen 2 GDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDE---DGKLVGIISRSDLLKAL 55 (57)
T ss_dssp HHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEEST---TSBEEEEEEHHHHHHHH
T ss_pred eECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec---CCEEEEEEEHHHHHhhh
Confidence 4689999999999999999999999999999999998 89999999999998764
No 123
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=98.62 E-value=3.1e-07 Score=104.30 Aligned_cols=184 Identities=14% Similarity=0.133 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---CchhH----HHHHHHHHHHhhhhh-cccccccccCCCCCCcc
Q 003885 349 LLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINER---GPIFK----VLLVAAVSLLTSCCS-YGLPWLSHCIPCPSYLE 420 (789)
Q Consensus 349 l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~-~~~p~~~~c~~~~~~~~ 420 (789)
++..+++|++.|+++.+|....++..+++..+... +++.+ ++.+++.+++.+.+. ++.|..
T Consensus 2 w~~~~l~gv~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~p~a----------- 70 (426)
T cd03683 2 WLFLALLGILMALISIAMDFAVEKLLNARRWLYSLLTGNSLLQYLVWVAYPVALVLFSALFCKYISPQA----------- 70 (426)
T ss_pred eEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-----------
Confidence 34567999999999999999999988777654322 12111 233344444444433 234433
Q ss_pred cCCCCCCCCCCCccccccCCCcchhhhhhhccCchHHHHhhhcCC-CCccchHHHHHHHHHHHHHHHHHHhcCcCCcccc
Q 003885 421 ADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSG-TSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLF 499 (789)
Q Consensus 421 ~~~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~-~~~~~~~~~L~~~~~~k~~lt~~t~g~g~~gG~f 499 (789)
..+|- .+ ++...++. .++.+++.. +..|++.+.++.|+|.+-|.-
T Consensus 71 -------~GsGI-----------p~------------v~~~l~g~~~~~~l~~r~----~~~k~i~~~l~i~sG~svGrE 116 (426)
T cd03683 71 -------VGSGI-----------PE------------MKTILRGVVLPEYLTFKT----LVAKVIGLTCALGSGLPLGKE 116 (426)
T ss_pred -------CCCCH-----------HH------------HHHHHcCCCccccccHHH----HHHHHHHHHHHHhcCCCCCCC
Confidence 11111 01 12222211 122233344 347999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhc-----cCcchHHHHHHHHHhhhhhhchhhHHHHhHHHhhcC-CC--ccHHHHHHHHHHH
Q 003885 500 IPVILAGASYGRLVGNLLGAL-----SDLDTGLFALLGAASFLGGTMRMTVSLCVILLELTN-NL--LMLPLVMLVLLIS 571 (789)
Q Consensus 500 ~P~l~iGa~~G~l~g~~~~~~-----~~~~~~~~alvGaaA~l~g~~r~pis~~vi~~ElTg-~~--~~l~pimia~~ia 571 (789)
.|+.-+||+.|..++++.+.. ...+--....+|+||.++++.++|++.+++.+|... ++ ..+.+.++++++|
T Consensus 117 GP~v~iGa~i~~~~~~~~~~~~~~~~~~~~rr~Li~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~i~s~~a 196 (426)
T cd03683 117 GPFVHISSIVAALLSKLTTFFSGIYENESRRMEMLAAACAVGVACTFGAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCG 196 (426)
T ss_pred CchHHHHHHHHHHHHhhcccccccccCHHHHHHHHHhHhhhhhHHhcCCcceeeEEEeehhhhhccHHHHHHHHHHHHHH
Confidence 999999999999999987531 111223588899999999999999999999999864 33 3566778888888
Q ss_pred HHHHHh
Q 003885 572 KTVADS 577 (789)
Q Consensus 572 ~~v~~~ 577 (789)
..+.+.
T Consensus 197 ~~v~~~ 202 (426)
T cd03683 197 AFTFRL 202 (426)
T ss_pred HHHHHH
Confidence 877664
No 124
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.57 E-value=1.3e-07 Score=75.49 Aligned_cols=56 Identities=30% Similarity=0.479 Sum_probs=52.6
Q ss_pred eeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHh
Q 003885 608 ASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLK 668 (789)
Q Consensus 608 v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~ 668 (789)
|+|+|+++++++++++++.++.+.|++++++.+||+|++ ++++|+|+++||++.+.
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-----~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDED-----GKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTT-----SBEEEEEEHHHHHHHHH
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-----CEEEEEEEHHHHHhhhh
Confidence 578999999999999999999999999999999999987 99999999999988763
No 125
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.53 E-value=1e-07 Score=95.24 Aligned_cols=127 Identities=19% Similarity=0.309 Sum_probs=104.7
Q ss_pred cccceeecccC--CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCc
Q 003885 604 KNLVASDVVSG--PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGS 681 (789)
Q Consensus 604 ~~l~v~dvM~~--~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~ 681 (789)
..++|+|+|.+ ..++++.+.++.+.++.+.++.|+.|||+.++ +..+.|++..+||+..+....
T Consensus 65 adl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~ed----kD~v~GIL~AKDLL~~~~~~~---------- 130 (293)
T COG4535 65 ADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED----KDHVEGILLAKDLLPFMRSDA---------- 130 (293)
T ss_pred HHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCC----chhhhhhhhHHHHHHHhcCCc----------
Confidence 47899999976 78999999999999999999999999999875 378999999999988765411
Q ss_pred ccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCC
Q 003885 682 DIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRP 761 (789)
Q Consensus 682 ~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~ 761 (789)
.. .|++++. ++...|+++..+...++-||........|||+ -|
T Consensus 131 ---~~------------------------------F~i~~lL-RPav~VPESKrvd~lLkeFR~~RnHMAIViDE---fG 173 (293)
T COG4535 131 ---EP------------------------------FDIKELL-RPAVVVPESKRVDRLLKEFRSQRNHMAIVIDE---FG 173 (293)
T ss_pred ---cc------------------------------ccHHHhc-ccceecccchhHHHHHHHHHhhcCceEEEEec---cC
Confidence 11 2233333 45668999999999999999999888888998 88
Q ss_pred CEEEEEecccCcchhhhccC
Q 003885 762 PIVGILTRHDFMPEHVLGLY 781 (789)
Q Consensus 762 ~vvGIITr~DLl~~~~~~~~ 781 (789)
-+.|.||..|++.....++-
T Consensus 174 gVsGLVTIEDiLEqIVGdIE 193 (293)
T COG4535 174 GVSGLVTIEDILEQIVGDIE 193 (293)
T ss_pred CeeeeEEHHHHHHHHhcccc
Confidence 89999999999986655543
No 126
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.34 E-value=1e-06 Score=94.58 Aligned_cols=118 Identities=21% Similarity=0.347 Sum_probs=97.8
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
++++++|+.++.++++.-..++.+++||.++. .-.++|+|+|+.+|+-.+ ++
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g--~~~~KLvG~vtsrdi~f~-~~------------------------- 168 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDG--KRGSKLVGIITSRDIQFL-ED------------------------- 168 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCC--cccceeEEEEehhhhhhh-hc-------------------------
Confidence 46788999999999999999999999998753 123799999999999443 11
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
...-+.++|.+.+++.+...+++++-+++++.....+||||+ +++++-+|+|.||.+
T Consensus 169 --------------------~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~---~gelva~~~rtDl~k 225 (503)
T KOG2550|consen 169 --------------------NSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDD---KGELVAMLSRTDLMK 225 (503)
T ss_pred --------------------ccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceecc---CCceeeeeehhhhhh
Confidence 013356788888899999999999999999999999999998 899999999999987
Q ss_pred hhhhccCccccc
Q 003885 775 EHVLGLYPHIVN 786 (789)
Q Consensus 775 ~~~~~~~~~l~~ 786 (789)
.+-||..++
T Consensus 226 ---~~~yPlask 234 (503)
T KOG2550|consen 226 ---NRDYPLASK 234 (503)
T ss_pred ---hcCCCcccc
Confidence 455666554
No 127
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.27 E-value=3.2e-06 Score=94.03 Aligned_cols=124 Identities=19% Similarity=0.224 Sum_probs=97.7
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
++..+.+++++.++++.|.+.+.+++||||++ ++.+|.+++.|...+.....+..... + -+.
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~-----g~~v~~~s~~Dv~~l~~~~~~~~~~~----------~--~l~- 299 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIMSERRISALPVVDEN-----GKKVGNYSRFDVIHLAREGTYNNLDL----------S--CLS- 299 (381)
T ss_pred hheeecCCCcHHHHHHHHHhcCcCcceEEcCC-----CceecceehhhhhhhhhcCccCccch----------h--HHH-
Confidence 68899999999999999999999999999997 77799999999988876543322110 0 000
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
.....++.-....+++.++.+|.++++.+.+.+..++.|||+ +|+++|+||..|++.
T Consensus 300 --------------------~~~~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~---~~~l~GvvSLsDil~ 356 (381)
T KOG1764|consen 300 --------------------EALSHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDE---DGVLVGVISLSDILS 356 (381)
T ss_pred --------------------HHhhhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcC---CCcEEEEeeHHHHHH
Confidence 011112222233689999999999999999999999999998 899999999999998
Q ss_pred hhhhc
Q 003885 775 EHVLG 779 (789)
Q Consensus 775 ~~~~~ 779 (789)
+....
T Consensus 357 ~l~~~ 361 (381)
T KOG1764|consen 357 YLVLT 361 (381)
T ss_pred HHHhC
Confidence 77654
No 128
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.21 E-value=7.3e-06 Score=90.91 Aligned_cols=109 Identities=20% Similarity=0.195 Sum_probs=89.0
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhcc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 694 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 694 (789)
......++.+..++.+.+...+.+...|+|++ +++.|.|+.+++...++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~g~~~~~~~~~~~~~~------------------------ 301 (363)
T TIGR01186 251 GPITKTADKGPRSALQLMRDERVDSLYVVDRQ-----NKLVGVVDVESIKQARKKA------------------------ 301 (363)
T ss_pred cceeecCCCCHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeHHHHHHHhhcC------------------------
Confidence 33455667788999999998889899999987 8999999999986654321
Q ss_pred ccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 695 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 695 ~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
-.+.+.+.+...++++++++.+++..|.+.+.. +||+|+ +|+++|+||+.++++
T Consensus 302 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~---~~~~~g~i~~~~~~~ 355 (363)
T TIGR01186 302 ----------------------QGLQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDE---DQRLVGIVTRGSLVD 355 (363)
T ss_pred ----------------------CchhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECC---CCcEEEEEEHHHHHH
Confidence 012344556777999999999999999999999 999998 899999999999998
Q ss_pred hhhh
Q 003885 775 EHVL 778 (789)
Q Consensus 775 ~~~~ 778 (789)
....
T Consensus 356 ~~~~ 359 (363)
T TIGR01186 356 ALYD 359 (363)
T ss_pred HHHh
Confidence 7654
No 129
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.18 E-value=7.2e-06 Score=92.05 Aligned_cols=118 Identities=17% Similarity=0.106 Sum_probs=93.0
Q ss_pred cceeecccCCe---EEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcc
Q 003885 606 LVASDVVSGPL---ITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSD 682 (789)
Q Consensus 606 l~v~dvM~~~v---vtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~ 682 (789)
+++.++|.++. +...++....++++.|...+.+..+|+|++ +++.|+|+.+++....+..
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~g~~~~~~~~~~~~~~------------ 336 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERG-----NKFVGAVSIDSLKTALTQQ------------ 336 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCC-----CcEEEEEeHHHHHhhhhcC------------
Confidence 56677775432 223466788999999999999999999987 8999999999996543220
Q ss_pred cccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCC
Q 003885 683 IMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPP 762 (789)
Q Consensus 683 ~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~ 762 (789)
.++.+.+.+...+|.+++++.+++..+.+.... +||||+ +++
T Consensus 337 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~---~~~ 378 (400)
T PRK10070 337 ----------------------------------QGLDAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDE---DQQ 378 (400)
T ss_pred ----------------------------------CchhhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECC---CCc
Confidence 112334556677999999999999999997776 999998 899
Q ss_pred EEEEEecccCcchhhh
Q 003885 763 IVGILTRHDFMPEHVL 778 (789)
Q Consensus 763 vvGIITr~DLl~~~~~ 778 (789)
++|+||+.++++....
T Consensus 379 ~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 379 YVGIISKGMLLRALDR 394 (400)
T ss_pred EEEEEEHHHHHHHHHh
Confidence 9999999999987654
No 130
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.11 E-value=1.2e-06 Score=90.45 Aligned_cols=57 Identities=23% Similarity=0.326 Sum_probs=53.5
Q ss_pred cccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcch
Q 003885 716 FVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPE 775 (789)
Q Consensus 716 ~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~ 775 (789)
.++..+||+++.+++++++++.+|.+++.+++++.+||+|+ +.+++||||+.|+.+.
T Consensus 244 ~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~---~~rl~GiVt~~dl~~~ 300 (382)
T COG3448 244 ELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDE---HRRLVGIVTQRDLLKH 300 (382)
T ss_pred cccHHHhcCccceecCCcCChHHHHHHHHHcCccccccccc---ccceeeeeeHHHHhhc
Confidence 35678999999999999999999999999999999999998 8899999999999983
No 131
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.93 E-value=4.6e-06 Score=98.11 Aligned_cols=160 Identities=18% Similarity=0.266 Sum_probs=106.8
Q ss_pred HHcCCCccccccc------ccccccceeeccc-CCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEeh
Q 003885 588 KLKGLPYLEAHAE------PYMKNLVASDVVS-GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLR 660 (789)
Q Consensus 588 ~~kg~p~l~~~~~------~~l~~l~v~dvM~-~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r 660 (789)
+.+++|.+..+.. ..-...+++|+|+ ++++++++++++.++.+.|.+++++.+||+|++ ++++|+|++
T Consensus 222 ~~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~-----g~lvGiit~ 296 (546)
T PRK14869 222 KENGVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDED-----GKVVGVISR 296 (546)
T ss_pred HhCCCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCC-----CCEEEEEEH
Confidence 4567776654321 1234678999999 899999999999999999999999999999987 899999999
Q ss_pred HHHHHHHhcCccccccccCCcccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeee---cCCCCHH
Q 003885 661 SHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTV---VETMSLA 737 (789)
Q Consensus 661 ~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV---~~~~sL~ 737 (789)
+|++...+++...-+.. + ..+... .+++..+. +-.+ +-.+.+++++.|..+ +...+..
T Consensus 297 ~dl~~~~~~~~iLVD~~-----e--------~~q~~~----~~~~~~i~-~iiD-HH~~~~~~~~~pi~~~~~~~gst~t 357 (546)
T PRK14869 297 YHLLSPVRKKVILVDHN-----E--------KSQAVE----GIEEAEIL-EIID-HHRLGDIQTSNPIFFRNEPVGSTST 357 (546)
T ss_pred HHhhccccCceEEEcCc-----c--------cccccc----chhhceEE-EEec-CCccCCCCCCCCcEEEeeeeeeHHH
Confidence 99987654432211100 0 000000 00000000 0001 112345666676655 3356677
Q ss_pred HHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcch
Q 003885 738 KAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPE 775 (789)
Q Consensus 738 ~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~ 775 (789)
.+.++|++.+....|++. ...+.||+|..+.++.
T Consensus 358 iv~~~~~~~~i~~~~~ia----~~ll~gIlsDT~~f~~ 391 (546)
T PRK14869 358 IVARMYRENGIEPSPEIA----GLLLAAILSDTLLFKS 391 (546)
T ss_pred HHHHHHHHcCCCCCHHHH----HHHHHHHHHHhcCccC
Confidence 899999999999888886 3568999999999874
No 132
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.77 E-value=2.7e-05 Score=71.54 Aligned_cols=55 Identities=25% Similarity=0.288 Sum_probs=50.3
Q ss_pred ccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 717 VDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 717 ~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
..+.++|.+.+.++++++++.+++++|++.+.+.+||+|+ +++++|+||++|+.+
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~---~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDD---DGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECC---CCeEEEEEEHHHhhc
Confidence 4467889889999999999999999999999999999997 789999999999865
No 133
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=97.67 E-value=3.4e-05 Score=88.45 Aligned_cols=111 Identities=11% Similarity=0.228 Sum_probs=87.1
Q ss_pred cceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCccccc
Q 003885 606 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMR 685 (789)
Q Consensus 606 l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~ 685 (789)
.+++|+|++++.++++++++.++.+.|+++++..+||+|++ ++++|+|+.+|++..+.+..
T Consensus 195 ~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~-----g~lvGiIt~~Dil~~l~~~~-------------- 255 (449)
T TIGR00400 195 EILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNE-----GRLVGIVTVDDIIDVIQSEA-------------- 255 (449)
T ss_pred CcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCC-----CeEEEEEEHHHHHHHHHhhh--------------
Confidence 46889999999999999999999999999999999999987 89999999999988775411
Q ss_pred ccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEE
Q 003885 686 RFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVG 765 (789)
Q Consensus 686 ~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvG 765 (789)
-+++|+....+..+++.+.++...+.+.++..++|.- +.|
T Consensus 256 ---------------------------------~ed~~~~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~~-------~~~ 295 (449)
T TIGR00400 256 ---------------------------------TEDFYMIAAVKPLDDSYFDTSILVMAKNRIIWLLVLL-------VSS 295 (449)
T ss_pred ---------------------------------HHHHHHhcCCCCCcchhhhchHHHHHHhccchHHHHH-------HHH
Confidence 0234444444444567788888888899888888763 667
Q ss_pred EEecccCcchh
Q 003885 766 ILTRHDFMPEH 776 (789)
Q Consensus 766 IITr~DLl~~~ 776 (789)
++| ..++..+
T Consensus 296 ~~t-~~ii~~f 305 (449)
T TIGR00400 296 TFT-ATIISNY 305 (449)
T ss_pred HHH-HHHHHHH
Confidence 777 5555543
No 134
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.64 E-value=7.6e-05 Score=68.58 Aligned_cols=54 Identities=15% Similarity=0.223 Sum_probs=50.8
Q ss_pred cceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHH
Q 003885 606 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLL 664 (789)
Q Consensus 606 l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl 664 (789)
.+++|+|.+++.++++++++.++++.|.+.++..+||+|++ ++++|+|+.+||.
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-----~~l~Givt~~dl~ 111 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDD-----GTPAGIITLLDLA 111 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCC-----CeEEEEEEHHHhh
Confidence 78999999999999999999999999999999999999987 8999999999984
No 135
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.54 E-value=0.00013 Score=66.34 Aligned_cols=55 Identities=24% Similarity=0.290 Sum_probs=50.7
Q ss_pred cceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHH
Q 003885 606 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 665 (789)
Q Consensus 606 l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~ 665 (789)
.++.++|..++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|+++
T Consensus 56 ~~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~-----~~~~Giit~~di~~ 110 (111)
T cd04603 56 LKVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKE-----GKLVGTIYERELLR 110 (111)
T ss_pred cChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCC-----CeEEEEEEhHHhhc
Confidence 46889999999999999999999999999999999999987 89999999999853
No 136
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=97.50 E-value=0.00013 Score=74.46 Aligned_cols=59 Identities=17% Similarity=0.258 Sum_probs=55.2
Q ss_pred ccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHh
Q 003885 605 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLK 668 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~ 668 (789)
+.+|+|+|+++++++++++++.|+++.|.+++...+-|+|++ ++++|+|+|.|+++.+.
T Consensus 233 ~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~-----gkpvGiITrTDIL~~ia 291 (294)
T COG2524 233 DAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSN-----GKPVGIITRTDILTRIA 291 (294)
T ss_pred cccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccC-----CcEEEEEehHHHHHHhh
Confidence 568999999999999999999999999999999999999987 99999999999987653
No 137
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.44 E-value=0.00018 Score=65.63 Aligned_cols=56 Identities=13% Similarity=0.253 Sum_probs=51.1
Q ss_pred ccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHH
Q 003885 605 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 665 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~ 665 (789)
..+++++|.+++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|++.
T Consensus 58 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----~~~~Gvi~~~dl~~ 113 (114)
T cd04619 58 TAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDEN-----ARPLGVLNARDALK 113 (114)
T ss_pred cCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCC-----CcEEEEEEhHhhcc
Confidence 356789999999999999999999999999999999999986 79999999999853
No 138
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=97.42 E-value=8.8e-05 Score=70.33 Aligned_cols=62 Identities=19% Similarity=0.313 Sum_probs=55.8
Q ss_pred hcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcchhhhcc
Q 003885 715 MFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHVLGL 780 (789)
Q Consensus 715 ~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~~~~~~ 780 (789)
..+..+.+|+.+.+.|.+++++.++.++|++.|+.++||++ +++++|-||-.|+.+..++..
T Consensus 63 ~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~----~~k~VGsItE~~iv~~~le~~ 124 (187)
T COG3620 63 TRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIE----EDKVVGSITENDIVRALLEGM 124 (187)
T ss_pred ceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceee----CCeeeeeecHHHHHHHHhccc
Confidence 45667889999999999999999999999999999999998 489999999999998776553
No 139
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.30 E-value=0.00031 Score=62.75 Aligned_cols=49 Identities=18% Similarity=0.173 Sum_probs=42.7
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcchh
Q 003885 726 SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEH 776 (789)
Q Consensus 726 ~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~~ 776 (789)
.++++++++++.++.++|++.+.+++||+|+ ++++++|+||++|+.+..
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~--~~~~~~Givt~~Dl~~~~ 50 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDS--RKQQFVGMLTITDFILIL 50 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeC--CCCEEEEEEEHHHHhhhe
Confidence 3568999999999999999999999999986 127899999999998643
No 140
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.18 E-value=0.0005 Score=63.27 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=43.6
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcchh
Q 003885 726 SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEH 776 (789)
Q Consensus 726 ~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~~ 776 (789)
+..++++++++.++.++|.+.+.+++||+|+ +++++|++|++|+++..
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~---~~~~~Giv~~~dl~~~~ 49 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDE---NGKVVDVYSRFDVINLA 49 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC---CCeEEEEEeHHHHHHHH
Confidence 4568999999999999999999999999997 78999999999998644
No 141
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.13 E-value=0.0006 Score=62.84 Aligned_cols=56 Identities=25% Similarity=0.437 Sum_probs=51.1
Q ss_pred ccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHH
Q 003885 605 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 665 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~ 665 (789)
..++.++|.+++.++++++++.++++.|.+.+.+.+||+|++ ++++|+|+++|++.
T Consensus 68 ~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----g~~~Gvit~~di~~ 123 (124)
T cd04600 68 PETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDED-----RRLVGIVTQTDLIA 123 (124)
T ss_pred cccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCC-----CCEEEEEEhHHhhc
Confidence 457889999999999999999999999999999999999976 89999999999853
No 142
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.12 E-value=0.00073 Score=60.96 Aligned_cols=57 Identities=18% Similarity=0.319 Sum_probs=51.2
Q ss_pred ccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHH
Q 003885 605 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVL 666 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~l 666 (789)
+.+++++|.+++.++++++++.++.+.|.+++...+||+|++ ++++|+|+++|++..
T Consensus 52 ~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----~~~~Gvit~~dll~~ 108 (109)
T cd04606 52 DTPVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEE-----GRLVGIITVDDVIDV 108 (109)
T ss_pred cchHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCC-----CcEEEEEEhHHhhhh
Confidence 356888998899999999999999999999999999999976 899999999999754
No 143
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.11 E-value=0.00076 Score=61.20 Aligned_cols=54 Identities=24% Similarity=0.266 Sum_probs=49.6
Q ss_pred cceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHH
Q 003885 606 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLL 664 (789)
Q Consensus 606 l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl 664 (789)
.++.++|.+++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|++
T Consensus 58 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----~~~~Gvit~~di~ 111 (113)
T cd04607 58 DPVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEE-----GRVVGLATLDDLL 111 (113)
T ss_pred CCHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCC-----CCEEEEEEhHHhc
Confidence 45788999999999999999999999999999999999976 8999999999984
No 144
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.07 E-value=0.00084 Score=59.55 Aligned_cols=47 Identities=23% Similarity=0.313 Sum_probs=43.1
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcch
Q 003885 726 SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPE 775 (789)
Q Consensus 726 ~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~ 775 (789)
++.++.+++++.++.+.|.+.+.+.+||+|+ +++++|++|.+|+.+.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~~~~Giv~~~dl~~~ 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDD---DGKLSGIITERDLIAK 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECC---CCCEEEEEEHHHHhcC
Confidence 5678999999999999999999999999997 7899999999998864
No 145
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.07 E-value=0.00088 Score=61.93 Aligned_cols=52 Identities=13% Similarity=0.232 Sum_probs=47.5
Q ss_pred eeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHH
Q 003885 608 ASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLL 664 (789)
Q Consensus 608 v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl 664 (789)
+.++|.+++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|+.
T Consensus 70 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----~~~vGiit~~di~ 121 (123)
T cd04627 70 DLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQ-----GNLIGNISVTDVR 121 (123)
T ss_pred hcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCC-----CcEEEEEeHHHhh
Confidence 346788899999999999999999999999999999987 7999999999984
No 146
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.06 E-value=0.00095 Score=60.98 Aligned_cols=57 Identities=25% Similarity=0.391 Sum_probs=51.8
Q ss_pred cccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHH
Q 003885 604 KNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 665 (789)
Q Consensus 604 ~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~ 665 (789)
+..++.++|.+++.++++++++.++++.|.+.+.+.+||+|++ ++++|+|++.|++.
T Consensus 65 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----~~~~Gvvt~~di~~ 121 (122)
T cd04585 65 SKIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQ-----GRLVGIITESDLFR 121 (122)
T ss_pred cccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCC-----CcEEEEEEHHHhhh
Confidence 3567889999999999999999999999999999999999976 79999999999864
No 147
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.04 E-value=0.00093 Score=60.74 Aligned_cols=56 Identities=21% Similarity=0.412 Sum_probs=49.5
Q ss_pred ccceeecccCCeEEecCC--CcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHH
Q 003885 605 NLVASDVVSGPLITFSGV--EKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 665 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~~--~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~ 665 (789)
+.++.++|.+++.+++++ +++.++++.|.+++...+||+|++ ++++|+|+++|++.
T Consensus 57 ~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~-----~~~~Gvit~~dl~~ 114 (115)
T cd04620 57 DLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQ-----GQLIGLVTAESIRQ 114 (115)
T ss_pred ccCHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCC-----CCEEEEEEhHHhhc
Confidence 356788998888889887 789999999999999999999986 89999999999853
No 148
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.04 E-value=0.00083 Score=63.74 Aligned_cols=49 Identities=24% Similarity=0.122 Sum_probs=44.5
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcchhh
Q 003885 726 SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHV 777 (789)
Q Consensus 726 ~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~~~ 777 (789)
++.++.+++++.+|.+.|.+.+...+||+|+ +++++|+||.+|+++...
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~---~g~l~Givt~~Dl~~~~~ 50 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS---DDFLEGILTLGDIQRFLF 50 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECC---CCeEEEEEEHHHHHHHHh
Confidence 5678999999999999999999999999997 789999999999987554
No 149
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.01 E-value=0.00082 Score=50.09 Aligned_cols=45 Identities=36% Similarity=0.490 Sum_probs=40.7
Q ss_pred CeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 727 PYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 727 p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
+.++.+++++.++.+.|++.+.+++||+++ +++++|+++++|+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~g~i~~~~l~~ 46 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDE---EGRLVGIVTRRDIIK 46 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECC---CCeEEEEEEHHHHHH
Confidence 457889999999999999999999999997 688999999999865
No 150
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.01 E-value=0.0012 Score=59.76 Aligned_cols=56 Identities=20% Similarity=0.415 Sum_probs=50.4
Q ss_pred cccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHH
Q 003885 604 KNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLL 664 (789)
Q Consensus 604 ~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl 664 (789)
...++.++|.+++.++++++++.++++.|.+++.+.+||+|++ ++++|+|++.|++
T Consensus 56 ~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~-----g~~~Gvvt~~dl~ 111 (113)
T cd04615 56 KDAKVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDK-----GKVGGIVTEDDIL 111 (113)
T ss_pred cCCcHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCC-----CeEEEEEEHHHhh
Confidence 3456788998899999999999999999999999999999986 7999999999984
No 151
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.99 E-value=0.0011 Score=59.96 Aligned_cols=54 Identities=13% Similarity=0.158 Sum_probs=49.1
Q ss_pred cceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHH
Q 003885 606 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 665 (789)
Q Consensus 606 l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~ 665 (789)
.++.++|..++.++++++++.++++.|.+++...+||+|+ ++++|+|+++|++.
T Consensus 58 ~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~------~~~~Gvvt~~dl~~ 111 (112)
T cd04625 58 TTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLDG------GTLLGVISFHDVAK 111 (112)
T ss_pred CCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEEC------CEEEEEEEHHHhhc
Confidence 5688999988899999999999999999999999999985 79999999999853
No 152
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=96.99 E-value=0.0012 Score=76.35 Aligned_cols=57 Identities=21% Similarity=0.277 Sum_probs=52.3
Q ss_pred cceeeccc-CCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHH
Q 003885 606 LVASDVVS-GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLL 667 (789)
Q Consensus 606 l~v~dvM~-~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL 667 (789)
.+++|+|. ++++++++++++.++.+.|.+++++.+||+|++ ++++|+|+++||+..+
T Consensus 147 ~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~-----g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 147 QPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDN-----GRLKGLITVKDIEKAE 204 (486)
T ss_pred CcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----CcEEEEEEhHHhhhhh
Confidence 46889998 789999999999999999999999999999987 8999999999997654
No 153
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.99 E-value=0.00079 Score=61.81 Aligned_cols=59 Identities=14% Similarity=0.215 Sum_probs=50.0
Q ss_pred ccceeecccC--CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHH
Q 003885 605 NLVASDVVSG--PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 665 (789)
Q Consensus 605 ~l~v~dvM~~--~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~ 665 (789)
..+++++|.+ ++.++++++++.++++.|.++++..+||+|++ .++++++|+|+++++..
T Consensus 57 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~--~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 57 KVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKV--DEGLEVIGRITKTNITK 117 (118)
T ss_pred CCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCC--CccceEEEEEEhhheec
Confidence 4567789975 78899999999999999999999999999974 11258999999999853
No 154
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.98 E-value=0.0012 Score=59.51 Aligned_cols=56 Identities=21% Similarity=0.353 Sum_probs=50.6
Q ss_pred ccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHH
Q 003885 605 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 665 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~ 665 (789)
+.+++++|..++.++++++++.++.+.|.+.+.+.+||+|++ ++++|+++++|+..
T Consensus 52 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----~~~~G~it~~di~~ 107 (108)
T cd04596 52 DTTIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDN-----KKLLGIISRQDVLK 107 (108)
T ss_pred cccHHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCC-----CCEEEEEEHHHhhc
Confidence 346888999899999999999999999999999999999976 89999999999853
No 155
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=96.96 E-value=0.0013 Score=61.38 Aligned_cols=51 Identities=24% Similarity=0.372 Sum_probs=45.4
Q ss_pred CCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcchhhh
Q 003885 725 TSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHVL 778 (789)
Q Consensus 725 ~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~~~~ 778 (789)
+++.++.+++++.++.+.|++.+.+++||+|+ +++++|+||.+|+++....
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~---~~~~~Gii~~~dl~~~~~~ 52 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDE---SGKILGMVTLGNLLSSLSS 52 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CCCEEEEEEHHHHHHHHHH
Confidence 35778999999999999999999999999997 7899999999999875544
No 156
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.94 E-value=0.0016 Score=61.78 Aligned_cols=56 Identities=23% Similarity=0.424 Sum_probs=50.8
Q ss_pred cccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHH
Q 003885 604 KNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 665 (789)
Q Consensus 604 ~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~ 665 (789)
...+++|+|.+++.++.+++++.++++.|.+++++.+||+|+ ++++|+|+++|++.
T Consensus 79 ~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~------~~~~Gvit~~di~~ 134 (135)
T cd04621 79 VPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN------DNIVGVITKTDICR 134 (135)
T ss_pred ccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC------CEEEEEEEHHHHhh
Confidence 356789999999999999999999999999999999999986 68999999999854
No 157
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.93 E-value=0.0031 Score=71.88 Aligned_cols=188 Identities=17% Similarity=0.140 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHH
Q 003885 106 TLALLIGVLTGLAAVFCNFFVENIAGFKLLLINNLMLNDRHFMGFVANTSINLGLAILAAILCAYIAPAAAGSGIPEVKA 185 (789)
Q Consensus 106 ~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~ 185 (789)
+..+++|+..|+.+.++...--...+++... .-+.|..-+ ++++.+...++.+..|..+=.+..-+..
T Consensus 310 ~pFi~LGifgGl~G~~~ir~n~~~~~~rK~~-----~lg~~pv~e-------v~~vt~iTaiIs~~np~~r~~~~e~i~~ 377 (696)
T KOG0475|consen 310 LPFILLGIFGGLWGAFFIRLNIRFCRFRKSS-----KLGKFPVLE-------VVFVTLVTAIISLFNPETRFNMSELITI 377 (696)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHhccchh-----hccCCcchh-------HHHHHHHHHHHHhcCHHHHhhHHHHHHH
Confidence 4789999999999998887766555544222 112222111 1222333345567778777665555666
Q ss_pred HHhCCCCCC-------------ccchhhHHHHHHhhhhhhhccccccCchhHHHHHHHHHHHhhccCccccc-hhhhhhc
Q 003885 186 YLNGIDAHS-------------ILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYH-LTWRWLR 251 (789)
Q Consensus 186 ~lng~~~~~-------------~l~~~~l~~K~~~~i~sv~sG~svG~EGP~vhiGa~igs~l~~~~s~~~~-l~~~~~~ 251 (789)
..|.-.... .+-...++.|++.++++.|++.|.|..-|...+||+.|-.+|-+.-..+. -+|..+.
T Consensus 378 Lf~~C~~~~s~~l~~~~~~~~~~~L~~a~i~k~~~t~ftfGakvP~GifvPSmaiGA~aGr~vG~~~e~l~~~~~~~~fg 457 (696)
T KOG0475|consen 378 LFNKCSPSSSTSLPETTVYSAAILLLLALILKIALTIFTFGAKVPAGIFVPSLAIGAIAGRAVGIIVEQLAQNPDFNLFG 457 (696)
T ss_pred HHhhcCCcccccCcccchHHHHHHHHHHHHHHHHHHHhhhhccCccceecchHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 655432111 12245678999999999999999999999999999999998742111110 0000000
Q ss_pred ccCChhhhhhHHHhhhhhhhhhhccCcchhhhHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 003885 252 YFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRG 314 (789)
Q Consensus 252 ~f~~~~~~r~lv~~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~ 314 (789)
.+=..-......||||-++..-|-|+.-|+...|.+..+ +..++-+.|+.+.+.
T Consensus 458 --~~ci~Pg~Ya~vGaAA~LsGvtrltvtlVVImFELTG~l-------~~IlPlm~av~~Skw 511 (696)
T KOG0475|consen 458 --LSCATPGAYALVGAAATLSGVTRLTVTLVVIMFELTGAL-------NYILPLMLAVMISKW 511 (696)
T ss_pred --hhhcCchHHHHHHHHHHhcCcceeeEEEEEEeeeccCcc-------eeHHHHHHHHHHHHH
Confidence 011123446678999999999999999999999998752 233444545444443
No 158
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.91 E-value=0.0015 Score=59.44 Aligned_cols=55 Identities=18% Similarity=0.341 Sum_probs=49.7
Q ss_pred ccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHH
Q 003885 605 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 665 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~ 665 (789)
..++.++|.+++.++++++++.++++.|.+.+...+||+|+ ++++|+|+++|++.
T Consensus 59 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~------~~~~Gvi~~~dl~~ 113 (114)
T cd04630 59 RVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN------NELIGIISLTDIFL 113 (114)
T ss_pred ccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC------CEEEEEEEHHHhhc
Confidence 35688999989999999999999999999999999999986 68999999999853
No 159
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=96.91 E-value=0.0026 Score=47.31 Aligned_cols=47 Identities=28% Similarity=0.425 Sum_probs=42.0
Q ss_pred eEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHH
Q 003885 616 LITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLL 667 (789)
Q Consensus 616 vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL 667 (789)
+.++++++++.++.+.+.+.+++.+||++++ ++++|+++..++...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEE-----GRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCC-----CeEEEEEEHHHHHHhh
Confidence 5678899999999999999999999999986 7999999999997654
No 160
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=96.88 E-value=0.0016 Score=58.89 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=50.0
Q ss_pred cceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHH
Q 003885 606 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 665 (789)
Q Consensus 606 l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~ 665 (789)
.++.++|.++..++++++++.++++.+.+++...+||+|++ ++++|+|++.||+.
T Consensus 59 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----~~~iG~it~~di~~ 113 (114)
T cd04604 59 LPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDN-----GRPVGVLHIHDLLR 113 (114)
T ss_pred CCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-----CCEEEEEEHHHhhc
Confidence 46889999999999999999999999999988999999976 89999999999853
No 161
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.88 E-value=0.0015 Score=59.96 Aligned_cols=57 Identities=18% Similarity=0.355 Sum_probs=51.5
Q ss_pred cccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHH
Q 003885 604 KNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 665 (789)
Q Consensus 604 ~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~ 665 (789)
...++.++|..++.++++++++.++++.|.+.+.+.+||+|++ ++++|+|++.|++.
T Consensus 65 ~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----~~~~Gvit~~dl~~ 121 (122)
T cd04803 65 RDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDK-----GTLVGIITRSDFLR 121 (122)
T ss_pred cCcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCC-----CCEEEEEEHHHhhc
Confidence 4567889999999999999999999999999999999999986 79999999999853
No 162
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.88 E-value=0.0017 Score=58.02 Aligned_cols=54 Identities=17% Similarity=0.292 Sum_probs=49.4
Q ss_pred cceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHH
Q 003885 606 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLL 664 (789)
Q Consensus 606 l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl 664 (789)
.+++++|.+++.++.+++++.++++.+.+++.+.+||+|++ ++++|+|+.++++
T Consensus 52 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----g~~~Gvi~~~di~ 105 (107)
T cd04610 52 ETVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDEN-----NNLVGIITNTDVI 105 (107)
T ss_pred ccHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCC-----CeEEEEEEHHHhh
Confidence 45788999889999999999999999999999999999987 8999999999985
No 163
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=96.87 E-value=0.0014 Score=59.11 Aligned_cols=54 Identities=17% Similarity=0.265 Sum_probs=49.7
Q ss_pred cceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHH
Q 003885 606 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLL 664 (789)
Q Consensus 606 l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl 664 (789)
.++.++|.+++.++++++++.++++.+.+++.+.+||+|++ ++++|+|+.+|++
T Consensus 58 ~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~-----~~~~Gvvs~~dl~ 111 (113)
T cd04587 58 TLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKS-----GQVVGLLDVTKLT 111 (113)
T ss_pred CCHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCC-----CCEEEEEEHHHhc
Confidence 56889999999999999999999999999999999999986 7999999999985
No 164
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=96.86 E-value=0.0018 Score=58.19 Aligned_cols=56 Identities=25% Similarity=0.350 Sum_probs=50.4
Q ss_pred cccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHH
Q 003885 604 KNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLL 664 (789)
Q Consensus 604 ~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl 664 (789)
...+++++|.+++.++++++++.++++.|.+.+...+||+|++ +++.|+|+++|++
T Consensus 54 ~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~-----~~~~Gvi~~~di~ 109 (111)
T cd04611 54 LQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDD-----GELLGLLSQTDLL 109 (111)
T ss_pred CCcCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCC-----CcEEEEEEhHHhh
Confidence 3466889999999999999999999999998888899999986 8999999999985
No 165
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=96.86 E-value=0.0042 Score=69.37 Aligned_cols=133 Identities=20% Similarity=0.188 Sum_probs=97.8
Q ss_pred CCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhc
Q 003885 614 GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFA 693 (789)
Q Consensus 614 ~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~ 693 (789)
++.+.+.+..++-++...+.+++++.+||+|.+ .+++..+++.+-+++.+....... ....+.
T Consensus 162 ~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~----~~~v~~ilt~~rIl~~l~~~~~~~-------------~~~~~l 224 (381)
T KOG1764|consen 162 PPFVSISPESSLLDAVLLLIKSRIHRVPVIDPE----TGEVLYILTQRRILKFLWLNGRLL-------------PLPSLL 224 (381)
T ss_pred CCceeecCcHHHHHHHHHHHhCCccceeeeccc----ccceeeehhHHHHHHHHHHhhccc-------------ccHHHh
Confidence 344889999999999999999999999999943 379999999999988876522110 000010
Q ss_pred cccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCc
Q 003885 694 KAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 773 (789)
Q Consensus 694 ~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl 773 (789)
. .++.|+. --+......+.+++++.+|+++|++.++..+||||+ .++.+|++++.|+.
T Consensus 225 ~------~s~~dl~-------------ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~---~g~~v~~~s~~Dv~ 282 (381)
T KOG1764|consen 225 S------KSLSDLG-------------IGTWSNIASISEDTPVIEALKIMSERRISALPVVDE---NGKKVGNYSRFDVI 282 (381)
T ss_pred h------CCHHHhC-------------cchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcC---CCceecceehhhhh
Confidence 0 0111111 111124668899999999999999999999999998 77789999999999
Q ss_pred chhhhccCcccc
Q 003885 774 PEHVLGLYPHIV 785 (789)
Q Consensus 774 ~~~~~~~~~~l~ 785 (789)
....+.-+..+.
T Consensus 283 ~l~~~~~~~~~~ 294 (381)
T KOG1764|consen 283 HLAREGTYNNLD 294 (381)
T ss_pred hhhhcCccCccc
Confidence 877766666554
No 166
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.86 E-value=0.0014 Score=60.14 Aligned_cols=57 Identities=18% Similarity=0.338 Sum_probs=51.1
Q ss_pred cccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHH
Q 003885 604 KNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 665 (789)
Q Consensus 604 ~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~ 665 (789)
...++.++|.+++.++++++++.++.+.|.+.+.+.+||+|++ ++++|+++++|++.
T Consensus 65 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~-----g~~~Gvit~~dl~~ 121 (122)
T cd04635 65 ASPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEK-----DQLVGIVDRHDVLK 121 (122)
T ss_pred ccCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCC-----CcEEEEEEhHHhhc
Confidence 3456788999999999999999999999999999999999986 89999999999853
No 167
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.85 E-value=0.0015 Score=58.78 Aligned_cols=55 Identities=18% Similarity=0.225 Sum_probs=49.7
Q ss_pred cceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHH
Q 003885 606 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 665 (789)
Q Consensus 606 l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~ 665 (789)
.++.++|..++.++++++++.++.+.|.+++.+.+||+|++ ++++|+++++|+..
T Consensus 56 ~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----~~~~G~it~~dl~~ 110 (111)
T cd04639 56 APVRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGS-----GRLVGLVTLENVGE 110 (111)
T ss_pred CcHHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCC-----CCEEEEEEHHHhhc
Confidence 35778898899999999999999999999999999999986 79999999999853
No 168
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=96.83 E-value=0.0017 Score=71.36 Aligned_cols=55 Identities=16% Similarity=0.111 Sum_probs=50.9
Q ss_pred ccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHH
Q 003885 605 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 665 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~ 665 (789)
+.+++|+|++++.++++++++.++++.|.+++.+.+||+|+ ++++|+|+++|++.
T Consensus 268 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~------~~lvGiit~~dil~ 322 (326)
T PRK10892 268 QASIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVADG------DHLLGVLHMHDLLR 322 (326)
T ss_pred cCCHHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEeeC------CEEEEEEEhHHhHh
Confidence 46789999999999999999999999999999999999985 79999999999964
No 169
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=96.82 E-value=0.0019 Score=58.30 Aligned_cols=55 Identities=27% Similarity=0.515 Sum_probs=50.6
Q ss_pred cceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeC-CCCCCCCeEEEEEehHHHHH
Q 003885 606 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDE-PPLTPAPELCGLVLRSHLLV 665 (789)
Q Consensus 606 l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~-~~~~~~~~l~GlI~r~dLl~ 665 (789)
.++.++|.+++.++++++++.++++.|.+.++..+||+|+ + ++++|+++.+|++.
T Consensus 58 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~-----~~~~Gvvt~~di~~ 113 (114)
T cd04613 58 VVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDP-----GKLLGILSRSDLLS 113 (114)
T ss_pred EEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCC-----CEEEEEEEhHHhhc
Confidence 6788999999999999999999999999999999999987 5 89999999999853
No 170
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=96.78 E-value=0.0021 Score=58.51 Aligned_cols=54 Identities=22% Similarity=0.295 Sum_probs=47.7
Q ss_pred cceeecccCCeEEecC--CCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHH
Q 003885 606 LVASDVVSGPLITFSG--VEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLL 664 (789)
Q Consensus 606 l~v~dvM~~~vvtv~~--~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl 664 (789)
..++++|..+..++.. ++++.++++.|.+++...+||+|++ ++++|+|+++|++
T Consensus 57 ~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~-----~~~~Gvit~~di~ 112 (114)
T cd04602 57 TPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDD-----GELVALVTRSDLK 112 (114)
T ss_pred CCHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCC-----CeEEEEEEHHHhh
Confidence 3477899887777766 9999999999999999999999976 8999999999985
No 171
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=96.78 E-value=0.0026 Score=56.81 Aligned_cols=53 Identities=15% Similarity=0.162 Sum_probs=48.5
Q ss_pred ceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHH
Q 003885 607 VASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLL 664 (789)
Q Consensus 607 ~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl 664 (789)
+++++|.++...+++++++.++++.|.+.+.+.+||+|++ ++++|+|+++++.
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----~~~~Gvi~~~~l~ 104 (106)
T cd04582 52 CCGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDED-----GRYVGEVTQRSIA 104 (106)
T ss_pred chhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCC-----CcEEEEEEHHHhh
Confidence 4778898888889999999999999999999999999986 7999999999985
No 172
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=96.78 E-value=0.0022 Score=57.38 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=49.3
Q ss_pred cceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHH
Q 003885 606 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLL 664 (789)
Q Consensus 606 l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl 664 (789)
.++.++|.+++.++++++++.++.+.+.+.+.+.+||+|++ ++++|+++++|++
T Consensus 54 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~-----g~~~Gvit~~~l~ 107 (109)
T cd04583 54 KSLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDED-----GKLVGLITRSSLV 107 (109)
T ss_pred CcHhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCC-----CeEEEEEehHHhh
Confidence 45778899899999999999999999999899999999986 8999999999985
No 173
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.77 E-value=0.0018 Score=59.69 Aligned_cols=56 Identities=23% Similarity=0.402 Sum_probs=50.4
Q ss_pred ccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHH
Q 003885 605 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 665 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~ 665 (789)
..++.++|.+++.++++++++.++++.+.+.+.+.+||+|++ ++++|+|+++|++.
T Consensus 69 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~-----~~~~Gvit~~di~~ 124 (125)
T cd04631 69 NEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDD-----GKLVGIVTERDLLK 124 (125)
T ss_pred hcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCC-----CcEEEEEEHHHhhc
Confidence 356788898899999999999999999999999999999976 79999999999854
No 174
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.77 E-value=0.0024 Score=57.63 Aligned_cols=54 Identities=24% Similarity=0.444 Sum_probs=48.9
Q ss_pred ccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHH
Q 003885 605 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLL 664 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl 664 (789)
+.++.++|.+++.++++++++.++++.|.+.+...+||+|+ ++++|+|+++|++
T Consensus 57 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~Gvi~~~di~ 110 (112)
T cd04802 57 EVPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDD------DELVGIVTTTDIV 110 (112)
T ss_pred cCCHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC------CEEEEEEEhhhhh
Confidence 45788999989999999999999999999999999999986 4899999999985
No 175
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.76 E-value=0.0026 Score=57.21 Aligned_cols=55 Identities=22% Similarity=0.366 Sum_probs=49.7
Q ss_pred ccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHH
Q 003885 605 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 665 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~ 665 (789)
..++.|+|.+++.++++++++.++++.+.+.+.+.+||+|+ ++++|+|+.+|++.
T Consensus 58 ~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~------~~~~Gvit~~di~~ 112 (113)
T cd04623 58 DTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG------GKLVGIVSIGDVVK 112 (113)
T ss_pred ccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC------CEEEEEEEHHHhhc
Confidence 45788999999999999999999999999999999999986 68999999999853
No 176
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=96.76 E-value=0.0021 Score=57.58 Aligned_cols=55 Identities=16% Similarity=0.235 Sum_probs=47.9
Q ss_pred ccceeecccCCeEEecC-CCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHH
Q 003885 605 NLVASDVVSGPLITFSG-VEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLL 664 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~-~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl 664 (789)
+.++.++|.+++..+.+ ++++.++++.+.+++++.+||+|++ ++++|+|+++|++
T Consensus 53 ~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----~~~~Gvi~~~dil 108 (110)
T cd04601 53 DKPVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDE-----GKLKGLITVKDIE 108 (110)
T ss_pred CCCHHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCC-----CCEEEEEEhhhhh
Confidence 35678899876666666 9999999999999999999999976 7999999999985
No 177
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.75 E-value=0.0025 Score=57.48 Aligned_cols=48 Identities=25% Similarity=0.270 Sum_probs=43.3
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcchh
Q 003885 726 SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEH 776 (789)
Q Consensus 726 ~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~~ 776 (789)
++.++++++++.++.+.|.+.+.+.+||+|+ +++++|+||++|+++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~~~~G~v~~~~l~~~~ 49 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDP---DERPIGIVTERDIVRAV 49 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECC---CCCEEEEeeHHHHHHHH
Confidence 4678999999999999999999999999997 78999999999997653
No 178
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=96.75 E-value=0.0013 Score=72.08 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=51.9
Q ss_pred ccccccccCC--CeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcchh
Q 003885 717 VDLHPITNTS--PYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEH 776 (789)
Q Consensus 717 ~dL~~im~~~--p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~~ 776 (789)
..++++|+++ +.++++++++.++.+.|++.+..++||+|+ +|+++|+||.+|+.+..
T Consensus 197 ~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~---~g~~iG~vt~~dl~~~~ 255 (321)
T PRK11543 197 NKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDA---QQQVQGVFTDGDLRRWL 255 (321)
T ss_pred hHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC---CCcEEEEecHHHHHHHH
Confidence 5688999998 999999999999999999999999999998 88999999999987643
No 179
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.75 E-value=0.0019 Score=58.26 Aligned_cols=55 Identities=22% Similarity=0.350 Sum_probs=49.8
Q ss_pred cceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHH
Q 003885 606 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 665 (789)
Q Consensus 606 l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~ 665 (789)
.++.++|..++.++++++++.++++.|.+++...+||+|++ ++++|+|++.|+++
T Consensus 58 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----~~~~G~it~~di~~ 112 (113)
T cd04622 58 TTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDD-----GRLVGIVSLGDLAR 112 (113)
T ss_pred CCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCC-----CcEEEEEEHHHhhc
Confidence 35889999999999999999999999999999999999976 79999999999853
No 180
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.74 E-value=0.0027 Score=57.14 Aligned_cols=54 Identities=20% Similarity=0.315 Sum_probs=49.3
Q ss_pred ccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHH
Q 003885 605 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLL 664 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl 664 (789)
..++.++|.+++.++++++++.++.+.|.+.+.+.+||+| + ++++|+|++.|++
T Consensus 55 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-----~~~~Gvvt~~di~ 108 (110)
T cd04595 55 HAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-D-----GRLVGIVTRTDLL 108 (110)
T ss_pred cCcHHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-C-----CEEEEEEEhHHhh
Confidence 4568889999999999999999999999999999999999 4 7999999999985
No 181
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=96.73 E-value=0.0022 Score=57.78 Aligned_cols=55 Identities=24% Similarity=0.335 Sum_probs=49.9
Q ss_pred ccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHH
Q 003885 605 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 665 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~ 665 (789)
..++.++|..++.++++++++.++++.|.+++.+.+||+|+ ++++|+++.+|++.
T Consensus 56 ~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD------GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC------CEEEEEEEHHHhhc
Confidence 35688999999999999999999999999999999999986 68999999999964
No 182
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=96.73 E-value=0.0025 Score=57.48 Aligned_cols=49 Identities=22% Similarity=0.301 Sum_probs=45.1
Q ss_pred cccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHH
Q 003885 611 VVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 665 (789)
Q Consensus 611 vM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~ 665 (789)
+|.+++.++++++++.++.+.|.+++.+.+||+++ ++++|+|+++|+..
T Consensus 56 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~------~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVDE------GRLVGIITRKDLLK 104 (105)
T ss_pred hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEEC------CeEEEEEEhhhhhc
Confidence 78889999999999999999999999999999964 79999999999854
No 183
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.73 E-value=0.0017 Score=61.11 Aligned_cols=55 Identities=24% Similarity=0.390 Sum_probs=50.2
Q ss_pred ccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHH
Q 003885 605 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 665 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~ 665 (789)
..++.++|.+++.++++++++.++++.|.+.+.+.+||+| + ++++|+|+++|+..
T Consensus 80 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~-----g~~~Gvit~~di~~ 134 (135)
T cd04586 80 GRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-G-----GRLVGIVSRADLLR 134 (135)
T ss_pred CCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-C-----CEEEEEEEhHhhhc
Confidence 4578899999999999999999999999999999999999 5 89999999999853
No 184
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=96.72 E-value=0.0025 Score=57.34 Aligned_cols=54 Identities=19% Similarity=0.295 Sum_probs=49.0
Q ss_pred cceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHH
Q 003885 606 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLL 664 (789)
Q Consensus 606 l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl 664 (789)
.++.++|..++.++++++++.++++.|.+.+.+.+||+|++ +++.|+|+++|++
T Consensus 55 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----~~~~G~i~~~dl~ 108 (110)
T cd04588 55 AKVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDE-----GRPVGIITRTDIL 108 (110)
T ss_pred cCHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCC-----CCEEEEEEhHHhh
Confidence 45778888899999999999999999999999999999986 7999999999985
No 185
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.69 E-value=0.0025 Score=57.26 Aligned_cols=54 Identities=15% Similarity=0.281 Sum_probs=48.8
Q ss_pred ceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHH
Q 003885 607 VASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 665 (789)
Q Consensus 607 ~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~ 665 (789)
++.++|.+++.++++++++.++++.|.+++...+||+|++ ++++|+|++.|+..
T Consensus 56 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----~~~~G~v~~~di~~ 109 (110)
T cd04605 56 SVEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAE-----NRVIGIITSEDISK 109 (110)
T ss_pred CHHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCC-----CcEEEEEEHHHhhh
Confidence 4778898899999999999999999999888999999986 89999999999853
No 186
>COG0517 FOG: CBS domain [General function prediction only]
Probab=96.69 E-value=0.003 Score=57.35 Aligned_cols=52 Identities=17% Similarity=0.375 Sum_probs=48.6
Q ss_pred ceeecccCCeEEecCCCcHHHHHHHHhh-cCCCeeEEeeCCCCCCCC-eEEEEEehHHH
Q 003885 607 VASDVVSGPLITFSGVEKVGNIMHALRL-TRHNGFPVIDEPPLTPAP-ELCGLVLRSHL 663 (789)
Q Consensus 607 ~v~dvM~~~vvtv~~~~~V~~~~~~L~~-~~~~~fPVVd~~~~~~~~-~l~GlI~r~dL 663 (789)
++.++|+++++++.+++++.++.+.|.+ .+++.+||+|++ + +++|++++.|+
T Consensus 63 ~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~-----~~~lvGivt~~di 116 (117)
T COG0517 63 PVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDD-----GGKLVGIITLSDI 116 (117)
T ss_pred cHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECC-----CCeEEEEEEHHHc
Confidence 6889999999999999999999999999 699999999986 5 99999999987
No 187
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.69 E-value=0.0027 Score=72.99 Aligned_cols=59 Identities=24% Similarity=0.241 Sum_probs=54.3
Q ss_pred cceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhc
Q 003885 606 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 669 (789)
Q Consensus 606 l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~ 669 (789)
.+++|+|+++++++++++++.++++.|.+++.+.+||+|++ ++++|+|+++||++....
T Consensus 148 ~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~-----g~lvGIIT~~DIl~~~~~ 206 (479)
T PRK07807 148 TQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDAD-----GRLVGVLTRTGALRATIY 206 (479)
T ss_pred CCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCC-----CeEEEEEEHHHHHHHhhC
Confidence 45889999999999999999999999999999999999987 899999999999887654
No 188
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=96.68 E-value=0.0028 Score=67.63 Aligned_cols=62 Identities=19% Similarity=0.262 Sum_probs=56.9
Q ss_pred ccccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhc
Q 003885 603 MKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 669 (789)
Q Consensus 603 l~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~ 669 (789)
.++.+...+|+++++++.+.++|..+.+.|--.+.+-+||+|++ .+++|+|+|+|+++.|+.
T Consensus 246 ~~~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n-----~~llGiitR~dvlk~lq~ 307 (432)
T COG4109 246 KPSTTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSN-----NTLLGIITRQDVLKSLQM 307 (432)
T ss_pred CCCccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCC-----ceEEEEEEHHHHHHHHHH
Confidence 34567778999999999999999999999999999999999998 899999999999998875
No 189
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.68 E-value=0.0025 Score=73.62 Aligned_cols=58 Identities=17% Similarity=0.194 Sum_probs=52.9
Q ss_pred ccceeecccC--CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHH
Q 003885 605 NLVASDVVSG--PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLL 667 (789)
Q Consensus 605 ~l~v~dvM~~--~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL 667 (789)
+.+++|+|++ +++++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|+++..
T Consensus 160 ~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~-----g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 160 DTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKN-----GNLVYLVFRKDYDSHK 219 (502)
T ss_pred CCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----CeEEEEEEhHHHHhcc
Confidence 4679999996 88999999999999999999999999999986 8999999999997643
No 190
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=96.67 E-value=0.003 Score=56.91 Aligned_cols=55 Identities=20% Similarity=0.238 Sum_probs=49.5
Q ss_pred ccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHH
Q 003885 605 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 665 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~ 665 (789)
..+++++|.+++.++++++++.++++.|.+++...+||+|+ ++++|+|+++|++.
T Consensus 56 ~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~G~it~~dl~~ 110 (111)
T cd04589 56 STPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG------GEVVGVLEQTDLLS 110 (111)
T ss_pred CCCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC------CEEEEEEEhHHhhc
Confidence 34678899999999999999999999999999999999986 69999999999853
No 191
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=96.66 E-value=0.0033 Score=56.49 Aligned_cols=55 Identities=27% Similarity=0.412 Sum_probs=49.9
Q ss_pred cceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHH
Q 003885 606 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 665 (789)
Q Consensus 606 l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~ 665 (789)
+++.++|.+++.++++++++.++++.|.+++.+.+||+|++ +++.|+|+..|+..
T Consensus 56 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----~~~~G~it~~di~~ 110 (111)
T cd04612 56 VLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDS-----GRLVGIVSRSDLLR 110 (111)
T ss_pred cCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCC-----CCEEEEEEHHHhhh
Confidence 46778899999999999999999999999999999999986 89999999999853
No 192
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.63 E-value=0.0025 Score=57.62 Aligned_cols=55 Identities=18% Similarity=0.383 Sum_probs=49.4
Q ss_pred ccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHH
Q 003885 605 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 665 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~ 665 (789)
..++.++|.+++.++++++++.++++.|.+++.+.+||+|+ ++++|+|+.+|+..
T Consensus 59 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~Gvit~~di~~ 113 (114)
T cd04629 59 VATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD------GKLVGQISRRDVLR 113 (114)
T ss_pred CccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC------CEEEEEEEHHHHhc
Confidence 34678899989999999999999999999999999999986 69999999999853
No 193
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.63 E-value=0.0033 Score=55.90 Aligned_cols=53 Identities=15% Similarity=0.315 Sum_probs=48.5
Q ss_pred cceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHH
Q 003885 606 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLL 664 (789)
Q Consensus 606 l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl 664 (789)
.++.++|.+++.++++++++.++++.|.+++...+||+|+ ++++|+|++++++
T Consensus 51 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~G~it~~~l~ 103 (105)
T cd04599 51 RLVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE------RKLVGIITKGTIA 103 (105)
T ss_pred CCHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC------CEEEEEEEHHHhc
Confidence 3577889999999999999999999999999999999986 7999999999984
No 194
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.62 E-value=0.0041 Score=57.72 Aligned_cols=52 Identities=21% Similarity=0.314 Sum_probs=46.9
Q ss_pred eecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHH
Q 003885 609 SDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 665 (789)
Q Consensus 609 ~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~ 665 (789)
.+.|.+++.++++++++.++.+.|.+++.+.+||+|++ ++++|+|+.+|++.
T Consensus 74 ~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~-----~~~~Giit~~dil~ 125 (126)
T cd04642 74 DGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEE-----GKPIGVITLTDIIS 125 (126)
T ss_pred cccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCC-----CCEEEEEEHHHHhc
Confidence 35678889999999999999999999998999999986 89999999999853
No 195
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.61 E-value=0.0038 Score=58.47 Aligned_cols=55 Identities=15% Similarity=0.372 Sum_probs=49.6
Q ss_pred ccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHH
Q 003885 605 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 665 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~ 665 (789)
..++.++|.+++..+.+++++.++++.|.+.+.+.+||+|+ ++++|+|+++|++.
T Consensus 77 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~------~~~iGvit~~dl~~ 131 (132)
T cd04636 77 GKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD------GKLVGIISRGDIIR 131 (132)
T ss_pred CCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC------CEEEEEEEHHHhhc
Confidence 34788999999999999999999999999999999999987 69999999999853
No 196
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=96.61 E-value=0.0032 Score=72.24 Aligned_cols=59 Identities=19% Similarity=0.210 Sum_probs=54.4
Q ss_pred cceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhc
Q 003885 606 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 669 (789)
Q Consensus 606 l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~ 669 (789)
.+++|+|+++++++++++++.++++.|.+++.+.+||+|++ ++++|+|+++||++....
T Consensus 146 ~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~-----g~LvGIIT~~DLl~~~~~ 204 (475)
T TIGR01303 146 TQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDAD-----GTLAGILTRTGALRATIY 204 (475)
T ss_pred CCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-----CeEEEEEEHHHHHHHHhC
Confidence 46889999999999999999999999999999999999977 899999999999886654
No 197
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.60 E-value=0.0029 Score=57.44 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=43.7
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcchhh
Q 003885 726 SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHV 777 (789)
Q Consensus 726 ~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~~~ 777 (789)
+++++++++++.++.+.|++.+.+.+||+|+ +++++|+++.+|+++...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~~~~~Giv~~~dl~~~~~ 50 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK---EGKYVGTISLTDILWKLK 50 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECC---CCcEEEEEeHHHHHHHhh
Confidence 4578999999999999999999999999997 789999999999976543
No 198
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.59 E-value=0.0034 Score=56.59 Aligned_cols=53 Identities=19% Similarity=0.362 Sum_probs=48.5
Q ss_pred cceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHH
Q 003885 606 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLL 664 (789)
Q Consensus 606 l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl 664 (789)
.++.++|.+++.++++++++.++++.|.+++...+||+|+ ++++|+|+++|++
T Consensus 57 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~G~it~~di~ 109 (111)
T cd04626 57 KKVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD------NKLIGVVRTKDIL 109 (111)
T ss_pred CcHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC------CEEEEEEEhHHhc
Confidence 4677889999999999999999999999999999999986 6899999999984
No 199
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.58 E-value=0.0031 Score=57.76 Aligned_cols=56 Identities=30% Similarity=0.560 Sum_probs=50.4
Q ss_pred cccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHH
Q 003885 604 KNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 665 (789)
Q Consensus 604 ~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~ 665 (789)
...++.++|.++..++++++++.++++.|.+.+.+.+||+|+ ++++|+|+++|++.
T Consensus 65 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~Gvi~~~dl~~ 120 (121)
T cd04633 65 RNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD------GKLVGIVTRTDILR 120 (121)
T ss_pred hccCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC------CEEEEEEEHHHhhc
Confidence 456788899999999999999999999999999999999986 69999999999853
No 200
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=96.58 E-value=0.0033 Score=56.18 Aligned_cols=53 Identities=13% Similarity=0.150 Sum_probs=47.6
Q ss_pred ceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHH
Q 003885 607 VASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 665 (789)
Q Consensus 607 ~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~ 665 (789)
++.++|.++..++++++++.++++.|.+++.+.+||+|+ ++++|+|+++|+..
T Consensus 51 ~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~------~~~iGvit~~dl~~ 103 (104)
T cd04594 51 DVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVDD------GKFKGIVTLDSILD 103 (104)
T ss_pred chhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEEC------CEEEEEEEHHHhhc
Confidence 466788888999999999999999999999999999984 79999999999853
No 201
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.58 E-value=0.0022 Score=58.21 Aligned_cols=55 Identities=18% Similarity=0.359 Sum_probs=47.9
Q ss_pred ccceeecccC--CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHH
Q 003885 605 NLVASDVVSG--PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLL 664 (789)
Q Consensus 605 ~l~v~dvM~~--~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl 664 (789)
+.++.++|.+ ++.++.+++++.++++.|.+.+.+.+||+|++ ++++|+++.+|++
T Consensus 56 ~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~-----~~~~Gvl~~~di~ 112 (114)
T cd04801 56 QTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDS-----GQVIGLITEADLL 112 (114)
T ss_pred ccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCC-----CcEEEEEecccee
Confidence 3467788874 36789999999999999999999999999986 7999999999884
No 202
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.57 E-value=0.0033 Score=58.46 Aligned_cols=46 Identities=24% Similarity=0.378 Sum_probs=42.2
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 726 SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 726 ~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
++.++.+++++.++.+.|++.+.+++||+|+ +++++|+++.+|+.+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~~~~Giv~~~dl~~ 47 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDS---DDNFIGVITAVDLLG 47 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcC---CCcEEEEEEHHHHhh
Confidence 4678999999999999999999999999997 789999999999885
No 203
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=96.57 E-value=0.0037 Score=72.38 Aligned_cols=60 Identities=20% Similarity=0.259 Sum_probs=54.7
Q ss_pred ccceeecccCC--eEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhc
Q 003885 605 NLVASDVVSGP--LITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 669 (789)
Q Consensus 605 ~l~v~dvM~~~--vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~ 669 (789)
+.+++|+|+++ ++++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|+++.+..
T Consensus 162 ~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~-----g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 162 ETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNED-----GELVDLVTRTDVKRVKGY 223 (505)
T ss_pred CCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----CeEEEEEEHHHHHHHhhC
Confidence 46788999976 8899999999999999999999999999987 899999999999887764
No 204
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=96.50 E-value=0.0023 Score=72.28 Aligned_cols=64 Identities=20% Similarity=0.289 Sum_probs=57.1
Q ss_pred cccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcchhhhccCccc
Q 003885 718 DLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHVLGLYPHI 784 (789)
Q Consensus 718 dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~~~~~~~~~l 784 (789)
.+.+.+..+|++|++++|+.+|.+.|.+.|...++|+|+ +++..||||++|+....+.+-.+..
T Consensus 150 rv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~---~~~~~GIvT~~dl~~~v~~~g~~~~ 213 (610)
T COG2905 150 RVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDD---SGPLLGIVTRKDLRSRVIADGRSKT 213 (610)
T ss_pred HHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcC---CCCccceeehHHHHHHHHhcCCCcc
Confidence 456778899999999999999999999999999999998 8999999999999998887665543
No 205
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=96.49 E-value=0.0027 Score=73.04 Aligned_cols=59 Identities=19% Similarity=0.301 Sum_probs=52.9
Q ss_pred cccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcchhh
Q 003885 716 FVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHV 777 (789)
Q Consensus 716 ~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~~~ 777 (789)
.+.++++|++++.++.+++++.++.+.|++.+.+.+||+|+ +++++|+||.+|+++...
T Consensus 334 ~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~---~~~~~Givt~~dl~~~~~ 392 (454)
T TIGR01137 334 NATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTE---AGKVLGSVTLRELLSALF 392 (454)
T ss_pred cCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CCeEEEEEEHHHHHHHHh
Confidence 35678899999999999999999999999999999999997 789999999999987443
No 206
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=96.48 E-value=0.0042 Score=56.44 Aligned_cols=48 Identities=25% Similarity=0.266 Sum_probs=43.3
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcchh
Q 003885 726 SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEH 776 (789)
Q Consensus 726 ~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~~ 776 (789)
++.++.+++++.++.+.|.+.+...+||+|+ +++++|+++++|+.+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~~~~~G~v~~~dl~~~~ 49 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDR---DGGVVGIITLPDLLRAL 49 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcC---CCCEEEEEEHHHHHHHH
Confidence 4678899999999999999999999999997 78999999999988644
No 207
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.45 E-value=0.0042 Score=57.70 Aligned_cols=57 Identities=19% Similarity=0.328 Sum_probs=49.2
Q ss_pred ccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHH
Q 003885 605 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLL 664 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl 664 (789)
..++.++|.++++++++++++.++++.|.+++...+||++++ ++++++|+|+++|++
T Consensus 70 ~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~---~~~~~~Gvit~~di~ 126 (128)
T cd04632 70 DLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPD---DDTKVVGILTKKDVL 126 (128)
T ss_pred cCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccC---CCCcEEEEEEhHhhh
Confidence 456889999999999999999999999999888899998541 128999999999985
No 208
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.43 E-value=0.0048 Score=56.63 Aligned_cols=55 Identities=25% Similarity=0.276 Sum_probs=49.9
Q ss_pred cceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHH
Q 003885 606 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 665 (789)
Q Consensus 606 l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~ 665 (789)
.++.++|.+++.++++++++.++.+.+.+.+.+.+||+|++ ++++|+++++|++.
T Consensus 67 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~-----~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDEN-----GQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCC-----CCEEEEEEHHHhhh
Confidence 46788999999999999999999999999999999999886 79999999999864
No 209
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=96.43 E-value=0.005 Score=56.29 Aligned_cols=55 Identities=20% Similarity=0.414 Sum_probs=49.6
Q ss_pred cccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHH
Q 003885 604 KNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLL 664 (789)
Q Consensus 604 ~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl 664 (789)
...++.++|.+++.++++++++.++++.|.+.+++.+||+|+ ++++|+++.+|++
T Consensus 65 ~~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~------~~~~Gvv~~~di~ 119 (121)
T cd04584 65 LKMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED------GRLVGIITETDLL 119 (121)
T ss_pred cCcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC------CEEEEEEEHHHhh
Confidence 345688899999999999999999999999999999999986 6899999999985
No 210
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=96.41 E-value=0.0033 Score=66.89 Aligned_cols=58 Identities=19% Similarity=0.242 Sum_probs=52.6
Q ss_pred cccccccccCC-CeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcchh
Q 003885 716 FVDLHPITNTS-PYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEH 776 (789)
Q Consensus 716 ~~dL~~im~~~-p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~~ 776 (789)
.+.++++|+++ +.++.+++++.++.+.|++.+.+.+||+|+ +++++|+||.+|+.+..
T Consensus 154 ~~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~---~g~~~Givt~~dl~~~~ 212 (268)
T TIGR00393 154 LVKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE---NNQLVGVFTDGDLRRAL 212 (268)
T ss_pred hhhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC---CCCEEEEEEcHHHHHHH
Confidence 46788999988 899999999999999999999999999997 78999999999998643
No 211
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=96.33 E-value=0.005 Score=55.38 Aligned_cols=50 Identities=12% Similarity=0.119 Sum_probs=44.2
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCC-CCEEEEEecccCcchhhh
Q 003885 726 SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGR-PPIVGILTRHDFMPEHVL 778 (789)
Q Consensus 726 ~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~-~~vvGIITr~DLl~~~~~ 778 (789)
+..++++++++.++.+.|.+.+..++||+|+ + ++++|++|.+|+++....
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~---~~~~~~G~v~~~~l~~~~~~ 52 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDG---DLDNIIGVVHVKDLLRALAE 52 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECC---CCceEEEEEEHHHHHHHHHc
Confidence 4578999999999999999999999999997 6 899999999999875543
No 212
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.32 E-value=0.0053 Score=70.44 Aligned_cols=59 Identities=19% Similarity=0.232 Sum_probs=52.2
Q ss_pred hhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCC---CCEEEEEecccCcc
Q 003885 713 MEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGR---PPIVGILTRHDFMP 774 (789)
Q Consensus 713 ~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~---~~vvGIITr~DLl~ 774 (789)
+....+.++.|.+++.++++++++.++.++|++.+.+.+||+|+ + ++++|+||++|+..
T Consensus 76 V~~Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~---~~~~~~lvGIVt~rDL~~ 137 (450)
T TIGR01302 76 VKRVKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVED---GDMTGKLVGIITKRDIRF 137 (450)
T ss_pred HhhhccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeC---CCCCCeEEEEEEHHHHhh
Confidence 34455677788899999999999999999999999999999997 4 68999999999974
No 213
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=96.22 E-value=0.0081 Score=53.27 Aligned_cols=50 Identities=26% Similarity=0.274 Sum_probs=44.1
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcchhhh
Q 003885 726 SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHVL 778 (789)
Q Consensus 726 ~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~~~~ 778 (789)
++.+++.++++.++.+.|.+.+.+++||+|+ +++++|+++++|+++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~G~v~~~~l~~~~~~ 51 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDD---DGRLVGIVTERDLLRALAE 51 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECC---CCCEEEEEeHHHHHHHHHh
Confidence 4567889999999999999999999999997 6899999999999876544
No 214
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.03 E-value=0.0077 Score=69.70 Aligned_cols=58 Identities=24% Similarity=0.287 Sum_probs=53.1
Q ss_pred ccceeecccC--CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHH
Q 003885 605 NLVASDVVSG--PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLL 667 (789)
Q Consensus 605 ~l~v~dvM~~--~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL 667 (789)
+.+++|+|++ +++++++++++.++.+.|.+++.+.+||+|++ ++++|+|+++|+++..
T Consensus 158 ~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~-----g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 158 STPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDN-----GELVALVSRSDLKKNR 217 (495)
T ss_pred CCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCC-----CcEEEEEEehHhhhcc
Confidence 4578899997 89999999999999999999999999999987 8999999999997654
No 215
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.00 E-value=0.012 Score=53.69 Aligned_cols=55 Identities=11% Similarity=0.053 Sum_probs=46.8
Q ss_pred ccceeecccCCeEEecCCCcHHHHHHHHhhcCCC---eeEEeeCCCCCCCCeEEEEEehHHHH
Q 003885 605 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHN---GFPVIDEPPLTPAPELCGLVLRSHLL 664 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~---~fPVVd~~~~~~~~~l~GlI~r~dLl 664 (789)
+.+++++|.+++.++++++++.++.+.|.+.+.. ..||++++ ++++|+|+..|++
T Consensus 60 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~-----~~~~Gvvs~~di~ 117 (119)
T cd04598 60 KKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEE-----GRYLGIGTVKDLL 117 (119)
T ss_pred CCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeC-----CeEEEEEEHHHHh
Confidence 4568899999999999999999999999877642 44688876 8999999999985
No 216
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=95.90 E-value=0.012 Score=52.62 Aligned_cols=53 Identities=25% Similarity=0.335 Sum_probs=45.2
Q ss_pred cceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHH
Q 003885 606 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 665 (789)
Q Consensus 606 l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~ 665 (789)
.++.++|.+++.++++++++.++.+.|.+ .+ ..||+|++ +++.|+|+++|+..
T Consensus 57 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~~-~~~vv~~~-----~~~~Gvvt~~di~~ 109 (110)
T cd04609 57 LPVREVMGEPLPTVDPDAPIEELSELLDR-GN-VAVVVDEG-----GKFVGIITRADLLK 109 (110)
T ss_pred cCHHHHhcCCCceeCCCCcHHHHHHHHHh-CC-ceeEEecC-----CeEEEEEeHHHhhc
Confidence 46778898899999999999999999988 33 47899876 89999999999853
No 217
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.81 E-value=0.014 Score=52.18 Aligned_cols=53 Identities=17% Similarity=0.203 Sum_probs=47.1
Q ss_pred ceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHH
Q 003885 607 VASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 665 (789)
Q Consensus 607 ~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~ 665 (789)
++.++|.+++.++++++++.++.+.|.+.+.+.+||+|+ +++.|+|+.+|++.
T Consensus 53 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~------~~~~G~it~~d~~~ 105 (106)
T cd04638 53 QLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD------GKLVGIVTVADIVR 105 (106)
T ss_pred hHHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC------CEEEEEEEHHHhhc
Confidence 456778888999999999999999999999999999985 69999999999853
No 218
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=95.79 E-value=0.014 Score=65.35 Aligned_cols=49 Identities=10% Similarity=0.166 Sum_probs=41.3
Q ss_pred cCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcchhh
Q 003885 724 NTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHV 777 (789)
Q Consensus 724 ~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~~~ 777 (789)
.++..+|++++++.+++....+.+.. ++|+| +|+++|+|++.++++...
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~----~~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 332 EAAPTVINPDTLMRDVLAARHRTGGA-ILLVE----NGRIVGVIGDDNIYHALL 380 (382)
T ss_pred cccCcccCCCCcHHHHHHHHhcCCCC-eEEee----CCeEEEEEeHHHHHHHHh
Confidence 44567899999999999998887765 88887 488999999999987654
No 219
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.77 E-value=0.017 Score=55.13 Aligned_cols=54 Identities=19% Similarity=0.407 Sum_probs=49.2
Q ss_pred ccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHH
Q 003885 605 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLL 664 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl 664 (789)
..++.++|..++.++++++++.++++.|.+.++..+||+|+ ++++|+|+.+|++
T Consensus 88 ~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~------~~~~Gvvt~~dl~ 141 (143)
T cd04634 88 KMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED------GRLVGIVTRGDII 141 (143)
T ss_pred cCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC------CEEEEEEEHHHhh
Confidence 45678899999999999999999999999999999999986 6899999999985
No 220
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=95.62 E-value=0.012 Score=66.61 Aligned_cols=57 Identities=14% Similarity=0.201 Sum_probs=49.3
Q ss_pred ccccccccC--CCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcch
Q 003885 717 VDLHPITNT--SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPE 775 (789)
Q Consensus 717 ~dL~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~ 775 (789)
..++++|.+ ++++++.+++++++.+.+++.+.+++||.++ +.++++|||+.+|++..
T Consensus 191 ~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~--~~d~ivGiv~~kDll~~ 249 (408)
T TIGR03520 191 TDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKE--TIDNITGVLYIKDLLPH 249 (408)
T ss_pred CEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcC--CCCceEEEEEHHHHHhH
Confidence 345778876 6789999999999999999999999999986 23679999999999864
No 221
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=95.59 E-value=0.034 Score=63.67 Aligned_cols=114 Identities=19% Similarity=0.123 Sum_probs=80.9
Q ss_pred CccchHHHHHHHHHHHHHHHHHHhcCcCCcccchHHHHHHHHHHHHHHHHhhh-----------c-cCcchHHHHHHHHH
Q 003885 467 SKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGA-----------L-SDLDTGLFALLGAA 534 (789)
Q Consensus 467 ~~~~~~~~L~~~~~~k~~lt~~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~-----------~-~~~~~~~~alvGaa 534 (789)
++-+.+.+|+ .|.+-.+.+.+.|.-.|--.|++-.||+.+..+++-=.. + ..-|--=+..+|+|
T Consensus 181 P~ivrl~TL~----~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S~~~r~~~r~fr~FrnDrdrRD~VscGaA 256 (762)
T KOG0474|consen 181 PGIVRLRTLI----VKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGSTSLRKDWRWFRYFRNDRDRRDLVSCGAA 256 (762)
T ss_pred cceeehhhhH----HhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCccchhhhhhhhhhhcccchhhhhhhcchH
Confidence 3444455543 688888889999999999999999999999999874322 1 22345567889999
Q ss_pred hhhhhhchhhHHHHhHHHhhcCCC---ccHHHHHHHHHHHHHHHHhhCchhHH
Q 003885 535 SFLGGTMRMTVSLCVILLELTNNL---LMLPLVMLVLLISKTVADSFNQGVYD 584 (789)
Q Consensus 535 A~l~g~~r~pis~~vi~~ElTg~~---~~l~pimia~~ia~~v~~~~~~~iy~ 584 (789)
|..+++.|+|+..+++.+|-..+. .++-=+.++.+++..+-+.|-.+.|.
T Consensus 257 AGVaAAF~APvGGvLFaLEE~aS~Wnq~L~WR~fFss~i~~f~l~~~i~~~~~ 309 (762)
T KOG0474|consen 257 AGVAAAFRAPVGGVLFALEEGASWWNQALLWRTFFSSAIVAFVLRAFILSCLS 309 (762)
T ss_pred HhHHHHhCCCccceEEEechhhHHHHhhHHHHHHHHhHHHHHhHHHHHHHHhc
Confidence 999999999999999999965433 34444445555555554433333343
No 222
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=95.30 E-value=0.025 Score=61.15 Aligned_cols=57 Identities=25% Similarity=0.339 Sum_probs=50.7
Q ss_pred ceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhc
Q 003885 607 VASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 669 (789)
Q Consensus 607 ~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~ 669 (789)
++.++|.++ .++++++++.++++.|++++.+..||+|+. +.++|+|+..|++..+..
T Consensus 134 ~l~~l~r~~-~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~-----G~viGiVTleDIle~ivG 190 (292)
T PRK15094 134 SMDKVLRQA-VVVPESKRVDRMLKEFRSQRYHMAIVIDEF-----GGVSGLVTIEDILELIVG 190 (292)
T ss_pred CHHHHcCCC-cCcCCCCcHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEeEHHHHHHHHhC
Confidence 467888765 489999999999999999999999999986 789999999999988765
No 223
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=95.14 E-value=0.022 Score=64.75 Aligned_cols=61 Identities=11% Similarity=0.265 Sum_probs=56.7
Q ss_pred cccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhc
Q 003885 604 KNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 669 (789)
Q Consensus 604 ~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~ 669 (789)
++.+++|+|.++++++.++++-+++.+.+++++.-..||||++ ++++|+|+.+|++..++.
T Consensus 194 ~~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~-----~~LiG~itiDDiidvi~e 254 (451)
T COG2239 194 PDELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDED-----NRLIGIITIDDIIDVIEE 254 (451)
T ss_pred cHhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECCC-----CceeeeeeHHHHHHHHHH
Confidence 3567889999999999999999999999999999999999998 899999999999998875
No 224
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.04 E-value=0.018 Score=61.28 Aligned_cols=49 Identities=22% Similarity=0.284 Sum_probs=41.7
Q ss_pred CCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcchhh
Q 003885 725 TSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHV 777 (789)
Q Consensus 725 ~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~~~ 777 (789)
+.+.++..|+++.+.....++... .++|||+ +++++|+|++..++....
T Consensus 335 ~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde---~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 335 DDVLTVDADTPLSEILARIRQAPC-PVAVVDE---DGRYVGIISRGELLEALA 383 (386)
T ss_pred ccccccCccchHHHHHHHHhcCCC-ceeEEcC---CCcEEEEecHHHHHHHHh
Confidence 455688899999999999888776 5899998 899999999999987654
No 225
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=94.70 E-value=0.053 Score=60.41 Aligned_cols=57 Identities=23% Similarity=0.283 Sum_probs=51.5
Q ss_pred ceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhc
Q 003885 607 VASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 669 (789)
Q Consensus 607 ~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~ 669 (789)
.+.+.|..++.++++++++.+++..+.++++. +||+|++ ++++|+|++.+++..+.+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~-----~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 303 GLQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDED-----QRLVGIVTRGSLVDALYD 359 (363)
T ss_pred chhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCC-----CcEEEEEEHHHHHHHHHh
Confidence 46677888888999999999999999999998 9999987 999999999999988864
No 226
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=92.75 E-value=0.19 Score=56.82 Aligned_cols=57 Identities=14% Similarity=0.265 Sum_probs=49.8
Q ss_pred ceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhc
Q 003885 607 VASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 669 (789)
Q Consensus 607 ~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~ 669 (789)
++.+.+..+..++++++++.+++..+.++.+. +||+|++ ++++|+|++.+++..+..
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~-----~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 338 GLDAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDED-----QQYVGIISKGMLLRALDR 394 (400)
T ss_pred chhhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCC-----CcEEEEEEHHHHHHHHHh
Confidence 45667777888999999999999999886665 9999987 999999999999998865
No 227
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=91.71 E-value=0.18 Score=55.22 Aligned_cols=57 Identities=23% Similarity=0.328 Sum_probs=51.9
Q ss_pred ccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHH
Q 003885 605 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVL 666 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~l 666 (789)
+..+.|+|+++.++.+...++.++-++|++++...+||||++ ++++-+|+|.||.+.
T Consensus 170 ~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~-----gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 170 SLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDK-----GELVAMLSRTDLMKN 226 (503)
T ss_pred cchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccC-----Cceeeeeehhhhhhh
Confidence 456789999988999999999999999999999999999998 999999999999543
No 228
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=90.52 E-value=0.32 Score=56.32 Aligned_cols=131 Identities=18% Similarity=0.161 Sum_probs=83.8
Q ss_pred ccccceeecccC--CeEEecCCCcHH-HHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccC
Q 003885 603 MKNLVASDVVSG--PLITFSGVEKVG-NIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMT 679 (789)
Q Consensus 603 l~~l~v~dvM~~--~vvtv~~~~~V~-~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~ 679 (789)
+....++|+|++ ++..+..+.+.. +.+....+.+|+.+||.+.++ ..-+|......+..++....
T Consensus 201 l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~----~~~i~~~L~~~~~~~~~~~~-------- 268 (498)
T KOG2118|consen 201 LTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEP----KNKIGGLLVMNLLRLLQVEV-------- 268 (498)
T ss_pred HHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcc----cchhhHHHHhhhhhhhcccc--------
Confidence 456778899987 555666666555 445556688999999999753 33444433333333222100
Q ss_pred CcccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCC
Q 003885 680 GSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPG 759 (789)
Q Consensus 680 ~~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~ 759 (789)
.....++..++......+++++++.+..+.|++... |+.|+.+
T Consensus 269 ---------------------------------~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~-H~~~v~~--- 311 (498)
T KOG2118|consen 269 ---------------------------------PLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKS-HMAVVRN--- 311 (498)
T ss_pred ---------------------------------ccccccchhhhccccccCCCcccHHHHHHHHhhhhc-eeEEEec---
Confidence 000123445556667788999999999999986554 6777765
Q ss_pred CCCEEEEEecccCcchhhhccCcc
Q 003885 760 RPPIVGILTRHDFMPEHVLGLYPH 783 (789)
Q Consensus 760 ~~~vvGIITr~DLl~~~~~~~~~~ 783 (789)
..--++++|..|+ .+..+++.-.
T Consensus 312 ~~~~~~~~~l~~~-~~~~~ev~de 334 (498)
T KOG2118|consen 312 GHVDIFVLTLEDL-EEVVKEVEDE 334 (498)
T ss_pred CCcceeeEeccch-hhhcceeccc
Confidence 4557999999998 6555444433
No 229
>PRK11573 hypothetical protein; Provisional
Probab=89.23 E-value=0.51 Score=53.61 Aligned_cols=55 Identities=4% Similarity=-0.051 Sum_probs=46.0
Q ss_pred ccccccC--CCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcch
Q 003885 719 LHPITNT--SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPE 775 (789)
Q Consensus 719 L~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~ 775 (789)
++++|.+ +...++.+++++++.+++++.+..++||.+++ .+.++|+|..+|++..
T Consensus 189 v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~--~D~IiGiv~~kDll~~ 245 (413)
T PRK11573 189 VDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDS--LDDAISMLRVREAYRL 245 (413)
T ss_pred hhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCC--CCceEEEEEHHHHHHH
Confidence 4556643 45789999999999999999999999999762 3569999999999864
No 230
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=85.34 E-value=4.1 Score=48.30 Aligned_cols=67 Identities=13% Similarity=0.119 Sum_probs=56.8
Q ss_pred cccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcchhhhccCcc
Q 003885 716 FVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHVLGLYPH 783 (789)
Q Consensus 716 ~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~~~~~~~~~ 783 (789)
.+.+.++|.++..+|..+++..|..+.+....+|.+|+||+ .+.--++|.|.|+.|.....+++-|+
T Consensus 587 ~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s-~esmiLlGSV~R~~L~~ll~~~ig~~ 653 (931)
T KOG0476|consen 587 TVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVES-KESMILLGSVARRYLTALLQRHIGPE 653 (931)
T ss_pred EEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccC-cccceeeehhHHHHHHHHHHhhcCcc
Confidence 56789999999999999999999998888777999999987 34457999999999988766655554
No 231
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=82.85 E-value=2.3 Score=47.74 Aligned_cols=55 Identities=9% Similarity=0.163 Sum_probs=44.7
Q ss_pred ceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhc
Q 003885 607 VASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 669 (789)
Q Consensus 607 ~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~ 669 (789)
++.+ +.++..++++++++.+++....++.+ -+||+|+ ++++|+|++.+++..|..
T Consensus 327 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~------~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 327 EVES-LEAAPTVINPDTLMRDVLAARHRTGG-AILLVEN------GRIVGVIGDDNIYHALLG 381 (382)
T ss_pred chhh-hcccCcccCCCCcHHHHHHHHhcCCC-CeEEeeC------CeEEEEEeHHHHHHHHhc
Confidence 3444 55667889999999999998877665 4888885 899999999999988753
No 232
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=81.12 E-value=7 Score=44.73 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=45.4
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhc
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 669 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~ 669 (789)
++..+++.+++.++++.|++++.+---|+|+. |...|+||..|++..+-.
T Consensus 280 ~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEy-----G~~~GlVTleDIiEeIvG 329 (429)
T COG1253 280 PPLFVPETLSLSDLLEEFREERTHMAIVVDEY-----GGVEGLVTLEDIIEEIVG 329 (429)
T ss_pred CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcC-----CCeEEEeEHHHHHHHHhC
Confidence 78899999999999999999888888889986 899999999999988765
No 233
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=77.02 E-value=2e+02 Score=35.69 Aligned_cols=83 Identities=19% Similarity=0.347 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhhhccCcchHHHHHHHHHhhhhhhchhh----------HHHHhHHHhhcCCCccHHHHHHHHHHHHHH
Q 003885 505 AGASYGRLVGNLLGALSDLDTGLFALLGAASFLGGTMRMT----------VSLCVILLELTNNLLMLPLVMLVLLISKTV 574 (789)
Q Consensus 505 iGa~~G~l~g~~~~~~~~~~~~~~alvGaaA~l~g~~r~p----------is~~vi~~ElTg~~~~l~pimia~~ia~~v 574 (789)
+||+.|..+|.++.......+...++.|-+++++|.+|-. ++.+++.+=..++..+.. .+.-+++|..+
T Consensus 197 ~Gaa~Gv~~Gli~~l~~~~~~~~~~~~af~GLlaG~fk~~gK~g~~~g~~l~~~il~~y~~~~~~~~~-~~~e~~ia~~l 275 (764)
T TIGR02865 197 AGAAGGVVIGVILGLANNANLYQIGVFGFAGLLGGIFKELGKIGTGIGYLVGFLILAFYTQGSVAFSL-ALYEALIATLL 275 (764)
T ss_pred HhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhhccCCcceeeHHHHHHHHHHHHHhccchhHHH-HHHHHHHHHHH
Confidence 4788888888887654445566677777788888888743 233333332223333222 23344555544
Q ss_pred HHhhCchhHHHHHH
Q 003885 575 ADSFNQGVYDQIVK 588 (789)
Q Consensus 575 ~~~~~~~iy~~~l~ 588 (789)
=-.+++.+|+..-+
T Consensus 276 Fll~P~~~~~~~~~ 289 (764)
T TIGR02865 276 FLLIPNKIYKKLER 289 (764)
T ss_pred HHHhhHHHHHHHHh
Confidence 43447777776654
No 234
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=73.47 E-value=6.1 Score=42.74 Aligned_cols=53 Identities=21% Similarity=0.325 Sum_probs=45.0
Q ss_pred cccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhc
Q 003885 611 VVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 669 (789)
Q Consensus 611 vM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~ 669 (789)
.+.+++.++..++++.+++....+.. ..+||+|++ ++++|+|++.+++.+|..
T Consensus 332 ~~~~~~~~v~~d~~~~~~~~~~~~~~-~p~aVvde~-----~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 332 ALIDDVLTVDADTPLSEILARIRQAP-CPVAVVDED-----GRYVGIISRGELLEALAR 384 (386)
T ss_pred cccccccccCccchHHHHHHHHhcCC-CceeEEcCC-----CcEEEEecHHHHHHHHhc
Confidence 56678889999999999998876644 468999998 999999999999988754
No 235
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=72.80 E-value=2e+02 Score=34.67 Aligned_cols=43 Identities=16% Similarity=0.282 Sum_probs=23.3
Q ss_pred HhhhhhhhhhhccCcch-hhh-HHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 003885 264 TCGAAAGVAGAFRAPVG-GVL-FALEEAASWWRSALLWRTFFTTAVVAVVLRGFIE 317 (789)
Q Consensus 264 ~~GaAAGvaaaF~APig-GvL-FalE~~~~~~~~~~~~~~f~~~~va~~v~~~l~~ 317 (789)
..|.+|.+.+.|+ |+ |++ |++-.- +|.+.++++++.+...+..
T Consensus 526 ~~~~~a~i~g~~g--ITEpaIPfgv~~p---------~~~i~~~~iG~avgG~i~~ 570 (631)
T PRK09765 526 ETGKSTWLLGLAG--ITEGAIPMAIEDP---------LRVIGSFVLGSMVTGAIVG 570 (631)
T ss_pred HHHHHHHHHHHHh--cCcccHHHHHhcc---------chHHHHHHHHHHHHHHHHH
Confidence 4566666666665 33 455 555432 2455566666665554443
No 236
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=69.23 E-value=5.2 Score=42.04 Aligned_cols=42 Identities=26% Similarity=0.214 Sum_probs=35.4
Q ss_pred cCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcch
Q 003885 731 VETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPE 775 (789)
Q Consensus 731 ~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~ 775 (789)
...+...+++..+...+...+||||+ +|+++|.||+.|++.+
T Consensus 267 ~~~~~~~~~ls~~~~~~~~~~~Vvd~---~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 267 LEGFVDRDALSDFLARGRSVLPVVDE---DGRPLGTVTRADLLDE 308 (309)
T ss_pred ccchhhHHHHHHHHhcCCceeEEECC---CCcEeeEEEHHHHhhh
Confidence 34555666888888999999999998 8999999999999864
No 237
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=64.39 E-value=28 Score=36.02 Aligned_cols=52 Identities=25% Similarity=0.358 Sum_probs=45.2
Q ss_pred cCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhc
Q 003885 613 SGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 669 (789)
Q Consensus 613 ~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~ 669 (789)
.+|.+.+++.-++...++-++.++.+---|||+- |-.-|+|+..|++..+-.
T Consensus 139 LRPav~VPESKrvd~lLkeFR~~RnHMAIViDEf-----GgVsGLVTIEDiLEqIVG 190 (293)
T COG4535 139 LRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEF-----GGVSGLVTIEDILEQIVG 190 (293)
T ss_pred cccceecccchhHHHHHHHHHhhcCceEEEEecc-----CCeeeeEEHHHHHHHHhc
Confidence 4578899999999999999998887778899986 889999999999877653
No 238
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=61.96 E-value=5.2 Score=26.62 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=20.3
Q ss_pred hhhhHHHhhhhhhhhhhccCcch
Q 003885 258 DRRDLITCGAAAGVAGAFRAPVG 280 (789)
Q Consensus 258 ~~r~lv~~GaAAGvaaaF~APig 280 (789)
.||+|+-.+++++.++++.++.+
T Consensus 3 sRR~fLk~~~a~~a~~~~~~~~~ 25 (26)
T PF10518_consen 3 SRRQFLKGGAAAAAAAALGGCAG 25 (26)
T ss_pred cHHHHHHHHHHHHHHHHhccccC
Confidence 58999999999999999988764
No 239
>PRK02509 hypothetical protein; Provisional
Probab=51.32 E-value=4.2e+02 Score=33.41 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 003885 347 ADLLAVIFLGVIGGIFGSFYN 367 (789)
Q Consensus 347 ~~l~~~i~lGv~~Gl~g~lf~ 367 (789)
..+|...++.+++.+++.+|.
T Consensus 325 a~LP~~~iL~~ia~l~A~~~~ 345 (973)
T PRK02509 325 VQLPVYTILSILAGIIAFWLL 345 (973)
T ss_pred eHHHHHHHHHHHHHHHHHHHH
Confidence 357777788888888887774
No 240
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=51.01 E-value=1.4e+02 Score=36.34 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=17.2
Q ss_pred hhhhHHHhhhhhhhhhhccC
Q 003885 258 DRRDLITCGAAAGVAGAFRA 277 (789)
Q Consensus 258 ~~r~lv~~GaAAGvaaaF~A 277 (789)
..++|++.|.+.-+++.|++
T Consensus 361 ~nqELiAlG~~Ni~sSff~~ 380 (665)
T KOG0236|consen 361 SNQELIALGISNILSSFFGC 380 (665)
T ss_pred CChHHHHHHHHHHhhhhhce
Confidence 46789999999999999984
No 241
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=44.76 E-value=30 Score=32.31 Aligned_cols=17 Identities=29% Similarity=0.690 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003885 350 LAVIFLGVIGGIFGSFY 366 (789)
Q Consensus 350 ~~~i~lGv~~Gl~g~lf 366 (789)
+..|++|+++|++|.++
T Consensus 66 i~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHH
Confidence 46789999999999775
No 242
>PRK14216 camphor resistance protein CrcB; Provisional
Probab=43.93 E-value=64 Score=30.56 Aligned_cols=50 Identities=24% Similarity=0.230 Sum_probs=25.7
Q ss_pred hhhHHHhhhhhhhhhhccCcchhhhHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 003885 259 RRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGF 315 (789)
Q Consensus 259 ~r~lv~~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~l 315 (789)
.++++..+.+++++|..|-=++..+ ..+....-|-++..-+++++++..+
T Consensus 6 ~~~~l~V~iGG~lGa~~Ry~l~~~~-------~~~~~~fP~gTl~vNv~GsfllG~~ 55 (132)
T PRK14216 6 YRELAAVFAGGALGTLARAALSELA-------APDPARWPWPTFTVNVVGAFLLGYF 55 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------hccCCCCcHHHHHHHHHHHHHHHHH
Confidence 4556667777777777774333111 1111122355566666666655544
No 243
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=43.63 E-value=1.3e+02 Score=24.25 Aligned_cols=17 Identities=24% Similarity=0.169 Sum_probs=7.1
Q ss_pred cccchhhhhHHHHHhhh
Q 003885 77 YEIVENELFKQDWRARR 93 (789)
Q Consensus 77 y~~~~~~~~~~~~~~~~ 93 (789)
|++.+|+.-.+-.++..
T Consensus 3 YSESDnETA~~FL~RvG 19 (60)
T PF06072_consen 3 YSESDNETATEFLRRVG 19 (60)
T ss_pred cCccccccHHHHHHHHh
Confidence 44445544333333333
No 244
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=42.05 E-value=38 Score=35.83 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=27.8
Q ss_pred HHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHH
Q 003885 626 GNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 665 (789)
Q Consensus 626 ~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~ 665 (789)
.+++..+...+...+||+|++ ++++|.|++.+|+.
T Consensus 273 ~~~ls~~~~~~~~~~~Vvd~~-----g~~~G~vt~~~l~~ 307 (309)
T COG1125 273 RDALSDFLARGRSVLPVVDED-----GRPLGTVTRADLLD 307 (309)
T ss_pred HHHHHHHHhcCCceeEEECCC-----CcEeeEEEHHHHhh
Confidence 345555556677889999998 99999999999964
No 245
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=38.13 E-value=19 Score=26.86 Aligned_cols=20 Identities=35% Similarity=0.523 Sum_probs=11.4
Q ss_pred ChhhhhhHH--Hhhhhhhhhhh
Q 003885 255 NDRDRRDLI--TCGAAAGVAGA 274 (789)
Q Consensus 255 ~~~~~r~lv--~~GaAAGvaaa 274 (789)
.+..||+|+ +.+++++++++
T Consensus 7 ~~~~RRdFL~~at~~~gavG~~ 28 (41)
T PF10399_consen 7 VDPTRRDFLTIATSAVGAVGAA 28 (41)
T ss_dssp ---HHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHH
Confidence 456788877 56666666554
No 246
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=36.58 E-value=76 Score=35.25 Aligned_cols=49 Identities=16% Similarity=0.141 Sum_probs=40.8
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHh
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLK 668 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~ 668 (789)
++..+++.+++.+-+..+++++.+---|||+- |.+.|+|+..|++.-+-
T Consensus 276 epyFVPe~Tpl~~QL~~F~~~k~hialVVDEY-----G~i~GLVTLEDIlEEIV 324 (423)
T COG4536 276 EPYFVPEGTPLSDQLVAFQRNKKHIALVVDEY-----GDIQGLVTLEDILEEIV 324 (423)
T ss_pred CCeecCCCCcHHHHHHHHHHhcceEEEEEecc-----CcEEeeeeHHHHHHHHh
Confidence 56788999999999888887766666688886 99999999999987654
No 247
>PF04550 Phage_holin_2: Phage holin family 2 ; InterPro: IPR007633 This entry represents the Bacteriophage P2, GpY, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=35.86 E-value=1.9e+02 Score=25.37 Aligned_cols=65 Identities=26% Similarity=0.319 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCcCCcccchHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHhhhhh
Q 003885 473 STLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGALSDLDTGLFALLGAASFLGG 539 (789)
Q Consensus 473 ~~L~~~~~~k~~lt~~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~alvGaaA~l~g 539 (789)
.+|++.-.+-.+--.++-+-.+.-=+|+-=..+|+.....-|..+-.++.++| .|++|.+|.++-
T Consensus 9 ~~L~~iGalIalgk~L~s~Epit~RL~iGR~ilGs~~S~~Aga~Li~~Pdl~p--lAv~GlgsalGI 73 (89)
T PF04550_consen 9 LTLFVIGALIALGKVLASNEPITLRLFIGRVILGSAVSVVAGAALIQFPDLPP--LAVIGLGSALGI 73 (89)
T ss_pred HHHHHHHHHHHHHHHHccCCCCchhHHhHHHHHhhHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHh
Confidence 34443333333334455555555566666666777777777776655555555 678888887753
No 248
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=33.45 E-value=4.4e+02 Score=25.29 Aligned_cols=26 Identities=12% Similarity=0.250 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003885 102 VFKWTLALLIGVLTGLAAVFCNFFVE 127 (789)
Q Consensus 102 ~~~w~~~~liGv~~Gl~a~~~~~~i~ 127 (789)
..-|++...+|++.+.+........+
T Consensus 7 IGGWL~lp~iglils~l~~~~~l~~~ 32 (149)
T PF10754_consen 7 IGGWLILPAIGLILSPLSTSLMLYLY 32 (149)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999988888776544
No 249
>COG0730 Predicted permeases [General function prediction only]
Probab=33.07 E-value=5.2e+02 Score=26.95 Aligned_cols=15 Identities=33% Similarity=0.519 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHH
Q 003885 102 VFKWTLALLIGVLTG 116 (789)
Q Consensus 102 ~~~w~~~~liGv~~G 116 (789)
...+....++|...|
T Consensus 76 ~~~l~~~~~~G~~lG 90 (258)
T COG0730 76 ALILLLGALIGAFLG 90 (258)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344456667777777
No 250
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=27.02 E-value=2.4e+02 Score=29.27 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003885 150 FVANTSINLGLAILAAILC 168 (789)
Q Consensus 150 ~~~~~~~~~~~~~~a~~l~ 168 (789)
|++|+.+++.++++++.++
T Consensus 52 ~~~~~i~gi~~g~l~am~v 70 (224)
T PF13829_consen 52 WWYWLIIGILLGLLAAMIV 70 (224)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666777777665443
No 251
>PRK08319 cobalt transport protein CbiM; Validated
Probab=26.59 E-value=3.3e+02 Score=28.19 Aligned_cols=16 Identities=31% Similarity=0.322 Sum_probs=10.4
Q ss_pred HhhhhhhhhhhccCcc
Q 003885 264 TCGAAAGVAGAFRAPV 279 (789)
Q Consensus 264 ~~GaAAGvaaaF~APi 279 (789)
.++++.-+.-.+|+|+
T Consensus 47 ~~~a~~f~~~~i~~pi 62 (224)
T PRK08319 47 LAGAFIFVLSALKIPS 62 (224)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 4444455556899995
No 252
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=25.97 E-value=1.1e+03 Score=27.49 Aligned_cols=79 Identities=13% Similarity=0.064 Sum_probs=45.4
Q ss_pred HHhcCcCCcccchHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHhhhhhhchhhHHHHhHHHhhcCCCccHHHHHHH
Q 003885 488 ITYGIAVPSGLFIPVILAGASYGRLVGNLLGALSDLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLV 567 (789)
Q Consensus 488 ~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~alvGaaA~l~g~~r~pis~~vi~~ElTg~~~~l~pimia 567 (789)
+-||...|- .|+|+.++|++.|.++..+++-.. -+.-+|..- |+ +.+ +++...+++.+++.
T Consensus 391 IPfgv~~p~-~~i~a~~iG~avgGa~~~~~gv~~------------~a~~gg~~~-p~----~~~-~~~~~~~~~~~~vG 451 (482)
T PRK11404 391 IPYALAAPL-PMITANTLAGGITGVLVIAFGIKR------------LAPGLGIFD-PL----IGL-MSPVGSFYLVLAIG 451 (482)
T ss_pred hHHHHcCch-HHHHHHHHHHHHHHHHHHHhCCcc------------cccccCeee-ec----HHh-hccHHHHHHHHHHH
Confidence 335555565 788888899999988888774211 111122222 21 100 23334567777777
Q ss_pred HHHHHHHHHhhCchhHHH
Q 003885 568 LLISKTVADSFNQGVYDQ 585 (789)
Q Consensus 568 ~~ia~~v~~~~~~~iy~~ 585 (789)
++++-.+-..+.+..|++
T Consensus 452 ~~v~a~~~~~~k~~~~~~ 469 (482)
T PRK11404 452 LALNISFIIVLKGLWLRR 469 (482)
T ss_pred HHHHHHHHHHHhhHhhhh
Confidence 777776666556666655
No 253
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=25.94 E-value=80 Score=38.13 Aligned_cols=148 Identities=8% Similarity=0.029 Sum_probs=78.1
Q ss_pred CchhHHHHHHHcC--CCcccccccccccccceeecccCCeEEecCCCc-HHHHHHHHhhcCCCeeEEeeCCCCCCCCeEE
Q 003885 579 NQGVYDQIVKLKG--LPYLEAHAEPYMKNLVASDVVSGPLITFSGVEK-VGNIMHALRLTRHNGFPVIDEPPLTPAPELC 655 (789)
Q Consensus 579 ~~~iy~~~l~~kg--~p~l~~~~~~~l~~l~v~dvM~~~vvtv~~~~~-V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~ 655 (789)
...|.+.|.+-+. .|.... .+..+......+.+.++-..+....+ +.++.+.+..++ ..+.+.|.+ |.++
T Consensus 13 ~~~I~~SW~Rc~~~~~p~~~~-~~~~l~~~~~~~~~~~~~~ll~~a~~~l~~l~~~l~~~~-~~~~l~D~~-----G~vL 85 (638)
T PRK11388 13 SPLIATSWERCNKLMKRETWN-VPHQAQGVTFASIYRRKKALLTLGQAALEDAWEYMADRE-CALLILDET-----GCIL 85 (638)
T ss_pred ChHHHHHHHHHHhcCCCcccC-CCCcCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCC-cEEEEEcCC-----ceEE
Confidence 3456666665553 333211 11233333444555544334444444 556666666555 688899987 8999
Q ss_pred EEEehHHHHHHHhcCccccccccCCcccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCC
Q 003885 656 GLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMS 735 (789)
Q Consensus 656 GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~s 735 (789)
.+....++...+.+..+.... .| .+...+. +-+. .......|+.|.-...
T Consensus 86 ~~~g~~~~~~~~~~~~~~~G~-----------~w---~E~~~GT-----------naig-----~al~~~~pv~v~g~EH 135 (638)
T PRK11388 86 SRNGDPQTLQQLSALGFNDGT-----------YC---AEGIIGT-----------NALS-----LAAISGQPVKTMGDQH 135 (638)
T ss_pred EEeCCHHHHHHHHHcCCccCC-----------cc---chhccCc-----------CHHH-----HHHhcCCceEEecHHH
Confidence 988888887665442221110 00 0000000 0000 0011245666665555
Q ss_pred HHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEec
Q 003885 736 LAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTR 769 (789)
Q Consensus 736 L~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr 769 (789)
..+. +........||.|. +|+++|+|+.
T Consensus 136 ~~~~---~~~~~c~aaPI~d~---~G~liGvl~l 163 (638)
T PRK11388 136 FKQA---LHNWAFCATPVFDS---KGRLTGTIAL 163 (638)
T ss_pred HHHh---ccCceEEeeEEEcC---CCCEEEEEEE
Confidence 5443 34456677999987 7899999973
No 254
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=25.35 E-value=2.1e+02 Score=23.28 Aligned_cols=28 Identities=14% Similarity=0.180 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 003885 100 YVVFKWTLALLIGVL-TGLAAVFCNFFVE 127 (789)
Q Consensus 100 ~~~~~w~~~~liGv~-~Gl~a~~~~~~i~ 127 (789)
..+.+-..+..+|++ +|++++++.....
T Consensus 30 ~Ef~~ia~~~~iG~~i~G~iGf~Ikli~~ 58 (61)
T PRK09400 30 EEFLLVAKVTGLGILLIGLIGFIIYLIMT 58 (61)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777778865 5999988876544
No 255
>PRK01844 hypothetical protein; Provisional
Probab=24.84 E-value=1.6e+02 Score=24.81 Aligned_cols=21 Identities=14% Similarity=0.145 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 003885 347 ADLLAVIFLGVIGGIFGSFYN 367 (789)
Q Consensus 347 ~~l~~~i~lGv~~Gl~g~lf~ 367 (789)
+-.+..+++++++|+++.+|.
T Consensus 4 ~~~I~l~I~~li~G~~~Gff~ 24 (72)
T PRK01844 4 WLGILVGVVALVAGVALGFFI 24 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344556677888888888874
No 256
>TIGR03546 conserved hypothetical protein TIGR03546. Members of this family are uncharacterized proteins, usually encoded by a gene adjacent to a member of family TIGR03545, which is also uncharacterized.
Probab=23.88 E-value=3.7e+02 Score=26.22 Aligned_cols=35 Identities=9% Similarity=-0.043 Sum_probs=22.7
Q ss_pred hhhhhhHHHhhhhhhhhhhccCcchhhhHHHhHhhh
Q 003885 256 DRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAAS 291 (789)
Q Consensus 256 ~~~~r~lv~~GaAAGvaaaF~APigGvLFalE~~~~ 291 (789)
.++...-++.|.|+|+-..|- |.-|.-+.+=....
T Consensus 12 ~~~tP~~iA~g~a~Gvf~g~~-P~~glh~~~~~~la 46 (154)
T TIGR03546 12 SNTSPAQLALAVALGMILGLT-PFLNLHNIALLFLV 46 (154)
T ss_pred CCCCHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHH
Confidence 344555678889999888884 55565555554443
No 257
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=22.98 E-value=2e+02 Score=23.25 Aligned_cols=14 Identities=21% Similarity=0.418 Sum_probs=8.5
Q ss_pred hhhHHHHHhhhhhh
Q 003885 83 ELFKQDWRARRKVE 96 (789)
Q Consensus 83 ~~~~~~~~~~~~~~ 96 (789)
+..+++|++++++.
T Consensus 22 ~~C~~~~~k~qk~~ 35 (59)
T PF09889_consen 22 PKCREEYRKRQKRM 35 (59)
T ss_pred HHHHHHHHHHHHHH
Confidence 45567776665544
No 258
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=21.78 E-value=8.9e+02 Score=29.53 Aligned_cols=81 Identities=20% Similarity=0.227 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHhhhccCc--chHHHHHHHHHhhhhhhchhhHHHHhHHHhhcCCCccHHHHHHHHHHHHHHHHhhCc
Q 003885 503 ILAGASYGRLVGNLLGALSDL--DTGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKTVADSFNQ 580 (789)
Q Consensus 503 l~iGa~~G~l~g~~~~~~~~~--~~~~~alvGaaA~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~~~ 580 (789)
.++|-..|-+++.+-.+++.. .|.- =+.-++- +|...-=++..-+-+|-|- ...+.+.+++++|++++..+..
T Consensus 333 ~~iGl~~g~lI~~~TeYyTs~~~~PVr--~IA~as~-tG~AtnII~Gla~G~~St~--~pvl~i~~~i~~sy~l~~~~~~ 407 (682)
T PF03030_consen 333 VLIGLVAGVLIGFITEYYTSYSYRPVR--EIAEASE-TGPATNIISGLAVGMESTA--IPVLVIAAAILISYYLGGGSGP 407 (682)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTSHHHH--HHHHHGG-G-HHHHHHHHHHHHHHCTH--HHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCchHH--HHHHHhC-cChHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhhh
Confidence 345555666666665554332 2221 1222222 2333333444444444433 1223334567778888855544
Q ss_pred hhHHHHHH
Q 003885 581 GVYDQIVK 588 (789)
Q Consensus 581 ~iy~~~l~ 588 (789)
++|-.-+.
T Consensus 408 GlyGiaiA 415 (682)
T PF03030_consen 408 GLYGIAIA 415 (682)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 67765443
No 259
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=20.48 E-value=1.5e+03 Score=27.24 Aligned_cols=31 Identities=16% Similarity=0.165 Sum_probs=24.0
Q ss_pred HHHhcCcCCcccchHHHHHHHHHHHHHHHHhh
Q 003885 487 IITYGIAVPSGLFIPVILAGASYGRLVGNLLG 518 (789)
Q Consensus 487 ~~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~ 518 (789)
++-||...|- ..+|+.++|++.|.++..+++
T Consensus 543 aIPfgv~~p~-~~i~~~~iG~avgG~i~~~~g 573 (631)
T PRK09765 543 AIPMAIEDPL-RVIGSFVLGSMVTGAIVGAMN 573 (631)
T ss_pred cHHHHHhccc-hHHHHHHHHHHHHHHHHHHhc
Confidence 3446666666 578999999999999888874
Done!