Query 003885
Match_columns 789
No_of_seqs 453 out of 2608
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 07:12:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003885.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003885hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3org_A CMCLC; transporter, tra 100.0 3E-89 1E-93 806.9 45.3 600 103-779 8-626 (632)
2 3nd0_A SLL0855 protein; CLC fa 100.0 2E-69 6.9E-74 612.1 41.3 436 74-589 2-443 (466)
3 1ots_A Voltage-gated CLC-type 100.0 3.7E-68 1.3E-72 603.9 42.4 414 102-590 33-452 (465)
4 4ene_A CLC-EC1, H(+)/CL(-) exc 100.0 5.5E-67 1.9E-71 590.8 46.7 408 106-589 22-436 (446)
5 2d4z_A Chloride channel protei 99.8 9.7E-21 3.3E-25 197.4 13.8 177 593-777 1-245 (250)
6 4esy_A CBS domain containing m 99.7 6.4E-19 2.2E-23 172.9 5.5 151 602-780 14-164 (170)
7 3lv9_A Putative transporter; C 99.7 1.3E-16 4.6E-21 152.3 12.3 127 602-780 19-147 (148)
8 3hf7_A Uncharacterized CBS-dom 99.7 8.6E-17 2.9E-21 150.5 8.9 127 605-780 1-129 (130)
9 3kpb_A Uncharacterized protein 99.7 1.7E-16 5.8E-21 145.9 10.6 120 606-778 1-120 (122)
10 3lhh_A CBS domain protein; str 99.7 2.5E-16 8.5E-21 154.8 12.5 128 603-782 39-168 (172)
11 3lfr_A Putative metal ION tran 99.7 1.1E-16 3.8E-21 150.9 8.5 128 605-782 2-131 (136)
12 3i8n_A Uncharacterized protein 99.7 1.8E-16 6.3E-21 148.0 9.9 125 603-778 3-129 (130)
13 2ef7_A Hypothetical protein ST 99.7 4.9E-16 1.7E-20 145.2 12.7 127 603-780 1-127 (133)
14 3jtf_A Magnesium and cobalt ef 99.7 1.4E-16 4.8E-21 148.6 8.5 124 604-780 3-128 (129)
15 2rih_A Conserved protein with 99.7 7.1E-16 2.4E-20 145.9 13.2 122 605-777 4-127 (141)
16 3k2v_A Putative D-arabinose 5- 99.6 3.4E-16 1.2E-20 149.7 10.2 119 606-774 28-148 (149)
17 3oco_A Hemolysin-like protein 99.6 2.1E-16 7.2E-21 152.0 8.7 129 603-783 17-148 (153)
18 3gby_A Uncharacterized protein 99.6 2.7E-16 9.2E-21 146.3 9.1 124 604-778 3-126 (128)
19 2p9m_A Hypothetical protein MJ 99.6 4E-16 1.4E-20 146.7 10.2 128 602-779 4-137 (138)
20 3nqr_A Magnesium and cobalt ef 99.6 1.3E-16 4.6E-21 148.3 6.7 122 605-777 2-125 (127)
21 2yzi_A Hypothetical protein PH 99.6 1.1E-15 3.7E-20 143.9 12.8 130 603-783 4-134 (138)
22 3k6e_A CBS domain protein; str 99.6 4E-16 1.4E-20 151.0 9.4 131 606-783 15-147 (156)
23 3fv6_A YQZB protein; CBS domai 99.6 1.2E-15 4E-20 147.8 11.9 130 601-780 12-146 (159)
24 3fhm_A Uncharacterized protein 99.6 8.8E-16 3E-20 149.6 10.9 136 597-781 15-153 (165)
25 3lqn_A CBS domain protein; csg 99.6 8.7E-16 3E-20 146.7 9.9 136 600-781 9-146 (150)
26 4gqw_A CBS domain-containing p 99.6 5.1E-16 1.7E-20 148.1 8.0 141 604-780 3-145 (152)
27 1pbj_A Hypothetical protein; s 99.6 1.2E-15 4.2E-20 140.6 10.3 123 606-779 1-123 (125)
28 3oi8_A Uncharacterized protein 99.6 6.2E-16 2.1E-20 149.4 7.8 120 603-774 35-156 (156)
29 3ocm_A Putative membrane prote 99.6 2.5E-15 8.4E-20 148.1 11.3 128 603-783 33-162 (173)
30 1o50_A CBS domain-containing p 99.6 3.4E-15 1.2E-19 144.0 11.4 142 601-780 11-155 (157)
31 2uv4_A 5'-AMP-activated protei 99.6 3.8E-15 1.3E-19 142.9 11.2 130 599-778 16-151 (152)
32 1y5h_A Hypothetical protein RV 99.6 1.2E-15 4.1E-20 142.6 7.2 126 603-778 5-131 (133)
33 2o16_A Acetoin utilization pro 99.6 2.2E-15 7.4E-20 146.1 9.2 133 604-778 3-135 (160)
34 3kxr_A Magnesium transporter, 99.6 3E-15 1E-19 151.6 10.5 126 603-783 51-179 (205)
35 3sl7_A CBS domain-containing p 99.6 1.6E-15 5.5E-20 149.1 8.0 153 605-779 3-157 (180)
36 2nyc_A Nuclear protein SNF4; b 99.6 4.9E-15 1.7E-19 140.0 10.7 128 603-778 5-141 (144)
37 2rc3_A CBS domain; in SITU pro 99.6 5.9E-15 2E-19 138.3 11.1 124 606-779 6-132 (135)
38 1pvm_A Conserved hypothetical 99.6 7.7E-15 2.6E-19 145.6 12.5 125 606-778 9-133 (184)
39 2emq_A Hypothetical conserved 99.6 7.3E-15 2.5E-19 141.3 11.6 135 602-782 7-143 (157)
40 3ctu_A CBS domain protein; str 99.6 5.2E-15 1.8E-19 142.4 10.0 133 603-782 12-146 (156)
41 2pfi_A Chloride channel protei 99.6 8E-15 2.7E-19 141.9 10.6 135 603-781 10-150 (164)
42 2j9l_A Chloride channel protei 99.6 8.1E-15 2.8E-19 144.9 10.5 156 601-782 6-169 (185)
43 3l2b_A Probable manganase-depe 99.6 1.2E-14 4.1E-19 151.0 12.0 165 605-777 6-243 (245)
44 1yav_A Hypothetical protein BS 99.5 5.4E-15 1.9E-19 142.9 7.7 134 603-782 11-146 (159)
45 4fry_A Putative signal-transdu 99.5 1.3E-14 4.4E-19 139.8 9.7 127 606-782 7-139 (157)
46 3pc3_A CG1753, isoform A; CBS, 99.5 3.1E-14 1E-18 164.5 11.1 154 579-780 357-513 (527)
47 1vr9_A CBS domain protein/ACT 99.5 3.3E-14 1.1E-18 144.7 9.4 118 606-778 13-130 (213)
48 2oux_A Magnesium transporter; 99.5 3E-14 1E-18 151.8 7.9 122 604-780 135-261 (286)
49 2yvy_A MGTE, Mg2+ transporter 99.5 7.8E-14 2.7E-18 147.9 11.1 124 604-782 133-261 (278)
50 3ddj_A CBS domain-containing p 99.5 5.4E-14 1.8E-18 149.9 8.3 134 605-781 155-288 (296)
51 2yzq_A Putative uncharacterize 99.4 1.2E-13 4.1E-18 145.8 9.2 154 605-778 125-279 (282)
52 3t4n_C Nuclear protein SNF4; C 99.4 2.1E-13 7.2E-18 147.1 11.3 128 604-779 185-321 (323)
53 3kh5_A Protein MJ1225; AMPK, A 99.4 1.9E-13 6.7E-18 143.7 9.1 133 605-776 147-279 (280)
54 2zy9_A Mg2+ transporter MGTE; 99.4 5.5E-13 1.9E-17 151.7 10.2 120 604-778 153-277 (473)
55 3kh5_A Protein MJ1225; AMPK, A 99.4 1.5E-12 5.1E-17 136.9 11.8 122 605-777 83-204 (280)
56 2qrd_G Protein C1556.08C; AMPK 99.4 1.5E-12 5E-17 141.2 11.9 128 605-780 181-317 (334)
57 3ddj_A CBS domain-containing p 99.4 7.1E-13 2.4E-17 141.2 9.2 122 605-777 92-213 (296)
58 2yzq_A Putative uncharacterize 99.3 7.8E-12 2.7E-16 131.8 12.9 120 605-773 59-179 (282)
59 4fxs_A Inosine-5'-monophosphat 99.3 1.6E-12 5.4E-17 148.4 5.2 116 606-775 89-206 (496)
60 3usb_A Inosine-5'-monophosphat 99.3 4.6E-12 1.6E-16 145.0 8.3 118 606-777 113-233 (511)
61 2v8q_E 5'-AMP-activated protei 99.3 2.1E-11 7.1E-16 131.9 12.5 130 607-779 119-252 (330)
62 1jcn_A Inosine monophosphate d 99.2 2.5E-14 8.5E-19 164.8 -11.7 178 546-777 47-232 (514)
63 4ene_A CLC-EC1, H(+)/CL(-) exc 99.2 1.1E-10 3.6E-15 131.6 17.9 185 107-314 239-423 (446)
64 3t4n_C Nuclear protein SNF4; C 99.2 2E-11 6.8E-16 131.6 10.8 132 607-779 115-249 (323)
65 2v8q_E 5'-AMP-activated protei 99.2 1.2E-11 4.1E-16 133.8 9.0 132 606-779 190-324 (330)
66 1ots_A Voltage-gated CLC-type 99.2 1.6E-10 5.4E-15 131.0 18.2 185 106-313 253-437 (465)
67 1zfj_A Inosine monophosphate d 99.2 1.7E-11 5.9E-16 140.3 10.4 116 608-777 92-210 (491)
68 4avf_A Inosine-5'-monophosphat 99.2 3.2E-12 1.1E-16 145.7 0.8 116 606-776 88-205 (490)
69 1vrd_A Inosine-5'-monophosphat 99.2 2.4E-12 8.3E-17 147.5 -0.2 173 547-778 35-215 (494)
70 3nd0_A SLL0855 protein; CLC fa 99.2 2.4E-10 8.4E-15 129.1 16.1 181 106-312 248-428 (466)
71 4af0_A Inosine-5'-monophosphat 99.1 8.1E-12 2.8E-16 139.4 0.6 121 609-784 141-261 (556)
72 1me8_A Inosine-5'-monophosphat 99.1 6.2E-12 2.1E-16 144.1 -1.2 125 604-778 94-221 (503)
73 2cu0_A Inosine-5'-monophosphat 99.1 4.5E-13 1.5E-17 153.1 -10.6 169 546-776 32-206 (486)
74 2qrd_G Protein C1556.08C; AMPK 99.1 2.2E-10 7.4E-15 124.0 10.8 128 610-778 111-243 (334)
75 3org_A CMCLC; transporter, tra 98.9 2.1E-08 7.1E-13 118.1 17.4 191 343-578 5-211 (632)
76 3ghd_A A cystathionine beta-sy 98.4 7E-07 2.4E-11 73.7 8.1 47 615-667 1-47 (70)
77 4esy_A CBS domain containing m 98.4 4.1E-07 1.4E-11 88.3 6.9 58 716-776 17-74 (170)
78 1vr9_A CBS domain protein/ACT 98.3 1E-06 3.5E-11 89.1 7.1 102 605-756 71-172 (213)
79 3ghd_A A cystathionine beta-sy 98.2 1.2E-06 4E-11 72.4 4.5 48 727-778 2-49 (70)
80 3fio_A A cystathionine beta-sy 98.2 5.6E-06 1.9E-10 67.4 8.1 48 615-668 1-48 (70)
81 3l2b_A Probable manganase-depe 98.1 2.8E-06 9.4E-11 87.6 5.5 60 717-779 7-66 (245)
82 2d4z_A Chloride channel protei 98.0 3.8E-06 1.3E-10 87.2 5.5 60 717-777 13-72 (250)
83 3lv9_A Putative transporter; C 98.0 5.4E-06 1.9E-10 78.2 5.4 59 717-778 23-84 (148)
84 3nqr_A Magnesium and cobalt ef 98.0 5.9E-06 2E-10 75.8 5.3 57 718-777 4-63 (127)
85 2rih_A Conserved protein with 98.0 5.5E-06 1.9E-10 77.4 5.2 59 717-778 5-65 (141)
86 3jtf_A Magnesium and cobalt ef 98.0 7.1E-06 2.4E-10 75.5 5.7 58 717-777 5-65 (129)
87 2o16_A Acetoin utilization pro 98.0 4.8E-06 1.6E-10 79.9 4.6 59 716-777 4-62 (160)
88 3k2v_A Putative D-arabinose 5- 97.9 6.2E-06 2.1E-10 77.9 5.1 59 717-778 28-88 (149)
89 3fio_A A cystathionine beta-sy 97.9 6.6E-06 2.3E-10 67.0 4.5 48 727-778 2-49 (70)
90 2yzi_A Hypothetical protein PH 97.9 8.3E-06 2.8E-10 75.7 5.6 55 717-774 7-61 (138)
91 3lfr_A Putative metal ION tran 97.9 9.9E-06 3.4E-10 75.4 5.6 57 718-777 4-63 (136)
92 2p9m_A Hypothetical protein MJ 97.9 1.1E-05 3.7E-10 74.8 5.6 57 717-776 8-65 (138)
93 3kpb_A Uncharacterized protein 97.9 2E-05 6.7E-10 71.4 6.6 59 606-669 62-120 (122)
94 3gby_A Uncharacterized protein 97.8 1.4E-05 4.8E-10 73.3 5.4 59 606-669 68-126 (128)
95 3oi8_A Uncharacterized protein 97.8 1.8E-05 6.1E-10 75.5 6.2 58 717-777 38-98 (156)
96 3fv6_A YQZB protein; CBS domai 97.8 1.5E-05 5E-10 76.3 5.4 56 717-776 17-72 (159)
97 4gqw_A CBS domain-containing p 97.8 1.6E-05 5.3E-10 74.8 5.0 56 717-775 5-62 (152)
98 3k6e_A CBS domain protein; str 97.8 2.1E-05 7.2E-10 75.3 5.6 60 603-669 83-142 (156)
99 3lqn_A CBS domain protein; csg 97.8 1E-05 3.5E-10 76.3 3.2 58 717-777 15-74 (150)
100 3i8n_A Uncharacterized protein 97.8 1E-05 3.5E-10 74.5 3.0 59 717-778 6-67 (130)
101 2rc3_A CBS domain; in SITU pro 97.8 3.8E-05 1.3E-09 70.9 6.9 60 604-669 72-131 (135)
102 2ef7_A Hypothetical protein ST 97.8 2.8E-05 9.7E-10 71.5 6.0 60 605-669 66-125 (133)
103 1pbj_A Hypothetical protein; s 97.7 3.1E-05 1E-09 70.3 6.0 60 604-669 63-122 (125)
104 1y5h_A Hypothetical protein RV 97.7 1.1E-05 3.7E-10 74.4 3.0 55 717-774 8-62 (133)
105 1pvm_A Conserved hypothetical 97.7 2.4E-05 8.2E-10 76.8 5.5 58 717-777 9-66 (184)
106 3ctu_A CBS domain protein; str 97.7 1.4E-05 4.9E-10 75.9 3.8 58 717-777 15-74 (156)
107 3kxr_A Magnesium transporter, 97.7 4.1E-05 1.4E-09 76.9 7.1 60 605-669 115-174 (205)
108 2emq_A Hypothetical conserved 97.7 1.9E-05 6.5E-10 74.9 4.4 58 717-777 11-70 (157)
109 1yav_A Hypothetical protein BS 97.7 1.4E-05 4.8E-10 76.3 3.5 58 717-777 14-73 (159)
110 3sl7_A CBS domain-containing p 97.7 2.9E-05 9.8E-10 75.3 5.6 61 604-669 96-156 (180)
111 3fhm_A Uncharacterized protein 97.7 1.5E-05 5.1E-10 76.7 3.3 59 716-777 23-84 (165)
112 3oco_A Hemolysin-like protein 97.7 5.4E-05 1.9E-09 71.7 7.1 59 605-669 85-143 (153)
113 1o50_A CBS domain-containing p 97.7 3.9E-05 1.3E-09 73.1 5.8 60 604-669 94-153 (157)
114 3lhh_A CBS domain protein; str 97.7 6.1E-05 2.1E-09 73.1 7.2 59 605-669 106-164 (172)
115 2pfi_A Chloride channel protei 97.7 2.3E-05 7.8E-10 74.8 4.0 60 717-777 13-72 (164)
116 2j9l_A Chloride channel protei 97.7 1.8E-05 6.2E-10 77.2 3.3 59 716-777 10-76 (185)
117 2nyc_A Nuclear protein SNF4; b 97.7 4.1E-05 1.4E-09 71.2 5.6 54 722-778 16-69 (144)
118 3hf7_A Uncharacterized CBS-dom 97.6 5.3E-05 1.8E-09 69.8 5.6 59 605-669 69-127 (130)
119 4fry_A Putative signal-transdu 97.6 6.4E-05 2.2E-09 71.4 6.3 60 604-669 76-135 (157)
120 3ocm_A Putative membrane prote 97.6 4.4E-05 1.5E-09 74.4 5.0 58 717-777 36-96 (173)
121 2uv4_A 5'-AMP-activated protei 97.6 7.7E-05 2.6E-09 70.5 6.4 58 606-668 87-150 (152)
122 3pc3_A CG1753, isoform A; CBS, 97.4 8.4E-05 2.9E-09 85.5 4.6 60 717-779 384-445 (527)
123 2yvy_A MGTE, Mg2+ transporter 97.3 0.00018 6.3E-09 75.5 6.1 60 605-669 198-257 (278)
124 2oux_A Magnesium transporter; 97.3 0.00022 7.6E-09 75.3 5.9 60 605-669 200-259 (286)
125 2zy9_A Mg2+ transporter MGTE; 97.1 0.00043 1.5E-08 78.4 6.8 61 604-669 217-277 (473)
126 3usb_A Inosine-5'-monophosphat 97.1 0.001 3.6E-08 75.8 10.1 61 604-669 173-234 (511)
127 1me8_A Inosine-5'-monophosphat 97.1 0.0003 1E-08 80.4 4.6 60 604-668 159-220 (503)
128 4fxs_A Inosine-5'-monophosphat 96.6 0.00083 2.8E-08 76.4 3.7 53 718-773 90-142 (496)
129 1vrd_A Inosine-5'-monophosphat 96.4 0.00053 1.8E-08 78.1 0.2 55 717-774 95-149 (494)
130 1zfj_A Inosine monophosphate d 96.4 0.0038 1.3E-07 70.9 6.9 60 605-669 151-211 (491)
131 4af0_A Inosine-5'-monophosphat 96.2 0.00075 2.6E-08 75.7 0.0 58 605-667 199-256 (556)
132 2cu0_A Inosine-5'-monophosphat 96.0 0.0027 9.2E-08 72.1 3.3 58 605-667 149-206 (486)
133 1jcn_A Inosine monophosphate d 95.8 0.002 6.8E-08 73.7 0.9 57 718-774 109-165 (514)
134 4avf_A Inosine-5'-monophosphat 95.7 0.0018 6.1E-08 73.5 0.1 61 604-669 145-207 (490)
135 2pq4_B Periplasmic nitrate red 30.9 20 0.00068 24.7 1.4 24 258-281 4-27 (35)
136 2l2t_A Receptor tyrosine-prote 27.0 71 0.0024 23.2 3.8 22 352-373 11-32 (44)
137 2ww9_B Protein transport prote 25.8 1.6E+02 0.0056 24.1 6.3 50 75-125 18-71 (80)
138 2kjf_A Carnocyclin-A; circular 21.0 72 0.0025 23.3 2.9 29 205-233 23-51 (60)
No 1
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=100.00 E-value=3e-89 Score=806.88 Aligned_cols=600 Identities=24% Similarity=0.387 Sum_probs=453.4
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHH
Q 003885 103 FKWT-LALLIGVLTGLAAVFCNFFVENIAGFKLLLINNLMLNDRHFMGFVANTSINLGLAILAAILCAYIAPAAAGSGIP 181 (789)
Q Consensus 103 ~~w~-~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGip 181 (789)
.||+ +++++|+++|+++++++.+++++++++...... ... ...|+.|+++++++++++++++.+++|.++|||||
T Consensus 8 ~r~~~~~~lvGi~~gl~~~~~~~~i~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp 83 (632)
T 3org_A 8 LRLVCFLTLLGVTAALFIFAVDLAVHGLEELRMKISRL-AGR---FAGYILYVVSGVALCLLSTFWCAVLSTEAEGSGLP 83 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCH---HHHHHHHHHHHHHHHHHHHHHHHHSCGGGCBCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhh---hHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHH
Confidence 3554 788999999999999999999999876544322 111 45677788889999999999999999999999999
Q ss_pred HHHHHHhCCC--CCCccchhhHHHHHHhhhhhhhccccccCchhHHHHHHHHHHHhhccCccccchhhhhhc-ccCChhh
Q 003885 182 EVKAYLNGID--AHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLR-YFKNDRD 258 (789)
Q Consensus 182 ev~~~lng~~--~~~~l~~~~l~~K~~~~i~sv~sG~svG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~-~f~~~~~ 258 (789)
|||++++|.. .++.+++|++++|++++++++++|+|+|||||+||+||++|+.+++. ++++ +++|+++
T Consensus 84 ~v~~~l~g~~~~~~~~~~~~~~~~K~~~~~l~igsG~s~GrEGP~vqiGa~ig~~~~~~---------~~f~~~~~~~~~ 154 (632)
T 3org_A 84 QMKSILSGFYDKMRSALELRVLFAKALGLICAIGGGLPVGWEGPNVHIACIIAHQFYRL---------GVFKELCTDRAL 154 (632)
T ss_dssp HHHHHTTTTHHHHGGGGSHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHTTS---------HHHHHHHHSHHH
T ss_pred HHHHHHhCccccccccccHHHHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHHHhhh---------hhhccccCCHHH
Confidence 9999999976 67889999999999999999999999999999999999999988751 0222 2348889
Q ss_pred hhhHHHhhhhhhhhhhccCcchhhhHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCcceEEecc
Q 003885 259 RRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFIEFCRSGRCGLFGQGGLIMFDVN 338 (789)
Q Consensus 259 ~r~lv~~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~l~~~~~~~~~~~f~~~~~~~f~~~ 338 (789)
||++++||+|||+||+|||||||++|++||+.++|+.+.+|+++++|++++++.+.+... ...+.+|+. .|++
T Consensus 155 ~r~ll~aGaaAG~aaaF~aPlaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~~~--~~~~~~~~~----~~~~- 227 (632)
T 3org_A 155 RLQTLAAACAVGLASSFGAPLGGVLYSIETIASFYLVQAFWKGVLSALSGAIVYELLYTT--PLVEAFEGT----NFDA- 227 (632)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTCSEEETTHHHHHHHHHHHHHHHTTC------------------------
T ss_pred HHHHHHHHHHHHHHHHhCCccHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccC--ccccccccc----cccc-
Confidence 999999999999999999999999999999999999999999999999999887654210 000011111 1222
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhhhhhcccccccccCCCCCC
Q 003885 339 SAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFKVLLVAAVSLLTSCCSYGLPWLSHCIPCPSY 418 (789)
Q Consensus 339 ~~~~~~~~~~l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~ 418 (789)
..++++.++ +++++|+++|++|++|+++++++.+++ +++..+.++++++++++++++++. +|..
T Consensus 228 --~~~~~~~~l-~~~~lGi~~Gl~g~~f~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~--~p~~--------- 291 (632)
T 3org_A 228 --SDVSRTQTL-LYAILGALMGVLGALFIRCVRSIYELR--MRHYPGTNRYFLVGVVALFASALQ--YPFR--------- 291 (632)
T ss_dssp ---CCCCSCTH-HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHSSTTCCTHHHHHHHHHHHHHHT--TTC----------
T ss_pred --cCCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcchhHHHHHHHHHHHHHHHH--HHHH---------
Confidence 235678899 999999999999999999999887762 122223456777877777766433 2321
Q ss_pred cccCCCCCCCCCCCccccccCCCcchhhhhhhccCchHHHHhhhcCCCC---ccchHHHHHHHHHHHHHHHHHHhcCcCC
Q 003885 419 LEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTS---KEFHLSTLLVFFVAIYCLGIITYGIAVP 495 (789)
Q Consensus 419 ~~~~~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~---~~~~~~~L~~~~~~k~~lt~~t~g~g~~ 495 (789)
.| .+ ++++.++.+|++.+. +++.+..|++++++|+++|++|+|+|+|
T Consensus 292 --------~g-------------~~---------~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~s~g~g~p 341 (632)
T 3org_A 292 --------LF-------------AL---------DPRATINDLFKAVPLYQTDHFGWTELILMPIIKFILVALSIGLPLP 341 (632)
T ss_dssp -----------------------------------CHHHHHHHHSCC----------CCSSHHHHHHHHHHHHHTTSSSB
T ss_pred --------hc-------------CC---------cHHHHHHHHHcCCccccccchhHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 11 00 123455666654221 1334446778889999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHhhhc-c-CcchHHHHHHHHHhhhhhhchhhHHHHhHHHhhcCCCccHHHHHHHHHHHHH
Q 003885 496 SGLFIPVILAGASYGRLVGNLLGAL-S-DLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKT 573 (789)
Q Consensus 496 gG~f~P~l~iGa~~G~l~g~~~~~~-~-~~~~~~~alvGaaA~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~ia~~ 573 (789)
||+|+|++++||++|+++|.+++.. + .++|+.||++||||+++|++|+|+++ +|++|+||++++++|+|+++++|++
T Consensus 342 GGif~P~l~iGA~~G~~~g~~~~~~~p~~~~p~~~a~vGmaa~~~~v~~ap~t~-vi~~E~tg~~~~~lpl~ia~~~a~~ 420 (632)
T 3org_A 342 AGVFVPSFLIGAGFGRLYGELMRVVFGNAIVPGSYAVVGAAAFTAGVTRALSCA-VIIFEVTGQIRHLVPVLISVLLAVI 420 (632)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSCCTTHH-HHHHHHTCCCSCSHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCChhHHHHHHHHHHHHHH
Confidence 9999999999999999999998653 2 37899999999999999999998886 5899999999999999999999999
Q ss_pred HHHhhCchhHHHHHHHcCCCcccccccccccccceeeccc--CCeEEecCCCcHHHHHHHHh-hcCCCeeEEeeCCCCCC
Q 003885 574 VADSFNQGVYDQIVKLKGLPYLEAHAEPYMKNLVASDVVS--GPLITFSGVEKVGNIMHALR-LTRHNGFPVIDEPPLTP 650 (789)
Q Consensus 574 v~~~~~~~iy~~~l~~kg~p~l~~~~~~~l~~l~v~dvM~--~~vvtv~~~~~V~~~~~~L~-~~~~~~fPVVd~~~~~~ 650 (789)
+++.+++++||.+++.|++|++++..+...++++|+|+|+ +++++++++++++|+.+.|+ +++|+.+||+|++
T Consensus 421 v~~~~~~~iY~~~~~~k~lp~l~~~~~~~~~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~---- 496 (632)
T 3org_A 421 VGNAFNRSLYETLVLMKHLPYMPILRRDRSPEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDAN---- 496 (632)
T ss_dssp HHHHHCCCHHHHHHHHTTCCEEEEECTTCCTTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTT----
T ss_pred HHHHhCCCHHHHHHHhcCCCccccccccccccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecC----
Confidence 9999999999999999999999876666678999999999 89999999999999999999 8999999999986
Q ss_pred CCeEEEEEehHHHHHHHhcCcc-ccccccCCcccccccchhhhccccCCCCCccc-ccc--cchhh---hhhcccccccc
Q 003885 651 APELCGLVLRSHLLVLLKGKKF-TKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLE-DLD--IKEEE---MEMFVDLHPIT 723 (789)
Q Consensus 651 ~~~l~GlI~r~dLl~lL~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~-di~--l~~~~---~~~~~dL~~im 723 (789)
++++|+|+++||++.+.++.. .+++. ...+....+...++.+.......+.. ... ..+++ .+...+++++|
T Consensus 497 -~~lvGiVt~~DL~~~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iM 574 (632)
T 3org_A 497 -GYLLGAISRKEIVDRLQHVLEDVPEPI-AGHRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPC 574 (632)
T ss_dssp -CBBCCEESHHHHTTTTTTC--------------------------------------------------------CCSC
T ss_pred -CeEEEEEEHHHHHHHHHHHhhhccccc-ccccceeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhh
Confidence 899999999999877654311 11100 00000111111222211110000000 000 00000 01112378999
Q ss_pred cCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcchhhhc
Q 003885 724 NTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHVLG 779 (789)
Q Consensus 724 ~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~~~~~ 779 (789)
+++|.+|++|+++.++.++|++++.+++||+ | +|+++||||++|+++.+.++
T Consensus 575 t~~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e---~G~lvGIVT~~Dll~~~~~~ 626 (632)
T 3org_A 575 DVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT-E---RGKLVGIVEREDVAYGYSNS 626 (632)
T ss_dssp CCCCCEEETTCBHHHHHHHHHHTCCSEEEEE-E---TTEEEEEEEGGGTEECCCC-
T ss_pred cCCCceecCCCcHHHHHHHHHhcCCCEEEEE-E---CCEEEEEEehhhHHHHHhhh
Confidence 9999999999999999999999999999999 4 78999999999999876554
No 2
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Probab=100.00 E-value=2e-69 Score=612.12 Aligned_cols=436 Identities=23% Similarity=0.385 Sum_probs=345.2
Q ss_pred CCCcccchhhhhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHH
Q 003885 74 SLDYEIVENELFKQDWRARRKVEIFQYVVFKWTLALLIGVLTGLAAVFCNFFVENIAGFKLLLINNLMLNDRHFMGFVAN 153 (789)
Q Consensus 74 sldy~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (789)
.+|||+.++. +.++.+++.+++..+..+..+++++++|+++|+++.+|+..+++++++++...... ....+..|+.+
T Consensus 2 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~l~~~liGi~~Gl~~~~f~~~l~~~~~~~~~~~~~~--~~~~~~~~~l~ 78 (466)
T 3nd0_A 2 AADFETSNRR-WLDKLPRNLTDSARSLHPRTLVAAIVVGLITGVLGAGFKSAVNNMLQWRSQLAQIL--APIPPLAWLVT 78 (466)
T ss_dssp -------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--TTSCTHHHHHH
T ss_pred CccHHHHHHH-HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccccHHHHHHH
Confidence 3799999444 43333222221111112334568999999999999999999999999998765432 12223345556
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhCCCCCCccchhhHHHHHHhhhhhhhccccccCchhHHHHHHHHHH
Q 003885 154 TSINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIAN 233 (789)
Q Consensus 154 ~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~~lng~~~~~~l~~~~l~~K~~~~i~sv~sG~svG~EGP~vhiGa~igs 233 (789)
+.++.++++++++++.+++|.++|||||||+++++|.+ +..++|+++.|++++++++++|+|+|||||++|+||++|+
T Consensus 79 ~~~~~~~~~l~~~l~~~~~p~a~GsGIp~v~~~l~g~~--~~~~~~~~~~k~~~~~ltig~G~S~GrEGP~vqiGa~ig~ 156 (466)
T 3nd0_A 79 ALISGGMVALSFWLMKRFAPDTSGSGIPQIEGHLEGKL--PLVWQRVLPIKLVGGFLSLGAGMLAGFEGPTIQMGGSIGQ 156 (466)
T ss_dssp HHHHHHHHHHHHHHHTTTCGGGSBCSHHHHHHHTTSSS--CCCHHHHHHHHHHHHHHHHHTTCSCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCcCCCCHHHHHHHHcCCC--CCchHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHH
Confidence 66666777788889989999999999999999999853 4456899999999999999999999999999999999999
Q ss_pred HhhccCccccchhhhhhcccCChhhhhhHHHhhhhhhhhhhccCcchhhhHHHhHhhhhhhh--hhHHHHHHHHHHHHHH
Q 003885 234 LLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRS--ALLWRTFFTTAVVAVV 311 (789)
Q Consensus 234 ~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv~~GaAAGvaaaF~APigGvLFalE~~~~~~~~--~~~~~~f~~~~va~~v 311 (789)
+++| +++. +++|||++++||+|||+||+|||||+|++|++||+.++|+. ..++++++++.+++++
T Consensus 157 ~l~~-----------~~~~--~~~~~r~ll~aGaAAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v 223 (466)
T 3nd0_A 157 MTGG-----------WFKA--TQENQRILIAVGAGAGLATAFNAPLAGVALIGEEMHPRFRSQTLAYHSLLFGCVMATII 223 (466)
T ss_dssp HHHH-----------HTTC--CHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHSSSCCCCSSCCTTHHHHHHHHHHHHHH
T ss_pred HHHH-----------HcCC--ChhHHHHHHHHHHHHHHHHHhCCchHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHH
Confidence 9997 3332 67899999999999999999999999999999999988843 5577999999999888
Q ss_pred HHHHHHHhhcCcccccCCCcceEEeccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhHHHH
Q 003885 312 LRGFIEFCRSGRCGLFGQGGLIMFDVNSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFKVLL 391 (789)
Q Consensus 312 ~~~l~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~~~~l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (789)
.+.+ +++.+ .|+++. ...++..++++++++|+++|++|.+|++++.++.+++++++ +..++++
T Consensus 224 ~~~~-----------~g~~~--~f~~~~-~~~~~~~~l~~~illGi~~Gl~g~lf~~~~~~~~~~~~~~~---~~~~~~~ 286 (466)
T 3nd0_A 224 LRMI-----------RGQSA--IISLTE-FKRVPLDSLWMFIILGILFGVMGYTFNRGLFKVLDWFDRLP---PLATKWK 286 (466)
T ss_dssp HHHH-----------TCSSC--SSCCTT-CCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---HHHHHHH
T ss_pred HHHH-----------cCCCC--ceecCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---cccHHHH
Confidence 8764 23333 344442 34567899999999999999999999999999988887653 2336677
Q ss_pred HHHHHHHhhhhhcccccccccCCCCCCcccCCCCCCCCCCCccccccCCCcchhhhhhhccCchHHHHhhhcCCCCccch
Q 003885 392 VAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKEFH 471 (789)
Q Consensus 392 ~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~ 471 (789)
+++++++++++.+++|.. .| .+++.++.++++ +++
T Consensus 287 ~~l~g~~~g~l~~~~p~~-----------------~G------------------------~G~~~i~~~~~~----~~~ 321 (466)
T 3nd0_A 287 GFLLGSIIGILSLFPLPL-----------------TD------------------------GGDNAVLWAFNS----QSH 321 (466)
T ss_dssp HHHHHHHHHHHTTSSSSC-----------------SS------------------------SSHHHHHHHTTS----CCC
T ss_pred HHHHHHHHHHHHHHHHHH-----------------cC------------------------CcHHHHHHHHcC----Ccc
Confidence 888888899888877754 12 133456666654 456
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcCCcccchHHHHHHHHHHHHHHHHhhhc---cCcchHHHHHHHHHhhhhhhchhhHHHH
Q 003885 472 LSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGAL---SDLDTGLFALLGAASFLGGTMRMTVSLC 548 (789)
Q Consensus 472 ~~~L~~~~~~k~~lt~~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~~---~~~~~~~~alvGaaA~l~g~~r~pis~~ 548 (789)
+..|+++++.|+++|++|+|+|+|||+|+|++++||++|+++|.+++.. ...+|+.||++||||+++|++|+|+|++
T Consensus 322 ~~~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~a~vGmaa~~a~v~~aPlt~i 401 (466)
T 3nd0_A 322 FSTLILVFCGRFLLTLICYGSGAIGGIFAPMLGIASIVSVAMARHFHLLFPSQIPEPAVMAIAGMGALVAATVRAPLTAI 401 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCBCCSHHHHHHHHHHHHHHHHHHHHHHCTTTCSSTHHHHHHTTSHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCceehHHHHHHHHHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 7788889999999999999999999999999999999999999998753 2578999999999999999999999999
Q ss_pred hHHHhhcCCCccHHHHHHHHHHHHHHHHhh-CchhHHHHHHH
Q 003885 549 VILLELTNNLLMLPLVMLVLLISKTVADSF-NQGVYDQIVKL 589 (789)
Q Consensus 549 vi~~ElTg~~~~l~pimia~~ia~~v~~~~-~~~iy~~~l~~ 589 (789)
+|++|+||++++++|+|+++++|+++++.+ +++|||.++++
T Consensus 402 vlv~Eltg~~~~~lpl~ia~~iA~~v~~~~~~~~iY~~~l~r 443 (466)
T 3nd0_A 402 LLTIEMTDNYFVILPLLVTCLVASVVAEALGGKPIYTVLLER 443 (466)
T ss_dssp HHHHHTTCCCTTHHHHHHHHHHHHHHHTTSCCCCHHHHHHHH
T ss_pred HHHHHHHCChHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 999999999999999999999999999999 79999999876
No 3
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=100.00 E-value=3.7e-68 Score=603.89 Aligned_cols=414 Identities=26% Similarity=0.390 Sum_probs=351.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHH
Q 003885 102 VFKWTLALLIGVLTGLAAVFCNFFVENIAGFKLLLINNLMLNDRHFMGFVANTSINLGLAILAAILCAYIAPAAAGSGIP 181 (789)
Q Consensus 102 ~~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGip 181 (789)
+..|++++++|+++|+++.+|+..+++++++++......... ....|+.|+++++++++++++++.++.|.++|||||
T Consensus 33 ~~~~~~~~liGv~~Gl~~~~f~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ll~~~l~~~~~p~a~GsGip 110 (465)
T 1ots_A 33 LAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTADN--YPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIP 110 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSSCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--cccHHHHHHHHHHHHHHHHHHHHHHhCccccCCChH
Confidence 345679999999999999999999999999998765432211 112244566778888899999999999999999999
Q ss_pred HHHHHHhCCCCCCccchhhHHHHHHhhhhhhhccccccCchhHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhh
Q 003885 182 EVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRD 261 (789)
Q Consensus 182 ev~~~lng~~~~~~l~~~~l~~K~~~~i~sv~sG~svG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~ 261 (789)
||+++++|.+ +..++|+++.|++++++++++|+|+|||||++|+||++|+.++| +++. ++++|||+
T Consensus 111 ~v~~~l~~~~--~~~~~r~~~~k~~~~~lti~sG~s~GrEGP~vqiGa~ig~~l~~-----------~~~l-~~~~~~r~ 176 (465)
T 1ots_A 111 EIEGALEDQR--PVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLD-----------IFRL-KGDEARHT 176 (465)
T ss_dssp HHHHHHTTCS--CCCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHH-----------HTTC-CSHHHHHH
T ss_pred HHHHHHhCCC--CCCcHHHHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHHHH-----------Hhcc-CCHHHHHH
Confidence 9999999853 35568999999999999999999999999999999999999997 3332 37889999
Q ss_pred HHHhhhhhhhhhhccCcchhhhHHHhHhhhhhhhhh--HHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCcceEEeccC
Q 003885 262 LITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSAL--LWRTFFTTAVVAVVLRGFIEFCRSGRCGLFGQGGLIMFDVNS 339 (789)
Q Consensus 262 lv~~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~--~~~~f~~~~va~~v~~~l~~~~~~~~~~~f~~~~~~~f~~~~ 339 (789)
+++||+|||+||+|||||+|++|++||+.++|+.+. ++++++++.+++++.+.+ +|+.+ .|+++.
T Consensus 177 li~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v~~~~-----------~G~~~--~f~~~~ 243 (465)
T 1ots_A 177 LLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIF-----------NHEVA--LIDVGK 243 (465)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTTSCSSSCCCCCHHHHHHHHHHHHHHHHHH-----------SCSCC--SSCCCC
T ss_pred HHHHHHHHHHHHHHCCchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH-----------cCCCc--eeecCC
Confidence 999999999999999999999999999999998776 889999999888888753 23333 334442
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhhhhhcccccccccCCCCCCc
Q 003885 340 AKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFKVLLVAAVSLLTSCCSYGLPWLSHCIPCPSYL 419 (789)
Q Consensus 340 ~~~~~~~~~l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~ 419 (789)
....++.++++++++|+++|++|.+|++++.++.++++++.+.++++++++++++++++++++++.|..
T Consensus 244 -~~~~~~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gl~~g~l~~~~P~~---------- 312 (465)
T 1ots_A 244 -LSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPAT---------- 312 (465)
T ss_dssp -CCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCGGG----------
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHHHHHHHHHHHHhHhh----------
Confidence 334567899999999999999999999999999999887653333456688889999999999888865
Q ss_pred ccCCCCCCCCCCCccccccCCCcchhhhhhhccCchHHHHhhhcCCCCccchHHHHHHHHHHHHHHHHHHhcCcCCcccc
Q 003885 420 EADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLF 499 (789)
Q Consensus 420 ~~~~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~L~~~~~~k~~lt~~t~g~g~~gG~f 499 (789)
.| ++++.++.++++ ++++..++++++.|+++|++|+|+|+|||+|
T Consensus 313 -------lG------------------------~G~~~i~~~~~~----~~~~~~l~~~~~~K~~~t~lt~gsG~~GGif 357 (465)
T 1ots_A 313 -------SG------------------------GGFNLIPIATAG----NFSMGMLVFIFVARVITTLLCFSSGAPGGIF 357 (465)
T ss_dssp -------SS------------------------CSTTHHHHHHHT----CSCHHHHHHHHHHHHHHHHHHHHTTCSSBSH
T ss_pred -------cC------------------------ChHHHHHHHHcC----CchHHHHHHHHHHHHHHHHHHHcCCCChhhh
Confidence 22 123446666654 4566778888999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhc---cCcchHHHHHHHHHhhhhhhchhhHHHHhHHHhhcCCCccHHHHHHHHHHHHHHHH
Q 003885 500 IPVILAGASYGRLVGNLLGAL---SDLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKTVAD 576 (789)
Q Consensus 500 ~P~l~iGa~~G~l~g~~~~~~---~~~~~~~~alvGaaA~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~ia~~v~~ 576 (789)
+|++++||++|+++|.+++.. ...+|+.||++||+|+++|++|+|+|+++|++|+||++++++|+|+++++|+++++
T Consensus 358 ~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~alvGmaa~~a~v~raPlt~ivlv~Eltg~~~~llpl~ia~~iA~~v~~ 437 (465)
T 1ots_A 358 APMLALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQ 437 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHTHHHHHTSCCHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987652 34789999999999999999999999999999999999999999999999999999
Q ss_pred hh-CchhHHHHHHHc
Q 003885 577 SF-NQGVYDQIVKLK 590 (789)
Q Consensus 577 ~~-~~~iy~~~l~~k 590 (789)
.+ ++++||.+++++
T Consensus 438 ~~~~~~iY~~~l~~~ 452 (465)
T 1ots_A 438 FTGGKPLYSAILART 452 (465)
T ss_dssp TTTCCCHHHHHHHHH
T ss_pred HhCCCChHHHHHHHH
Confidence 99 689999999875
No 4
>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...
Probab=100.00 E-value=5.5e-67 Score=590.81 Aligned_cols=408 Identities=26% Similarity=0.404 Sum_probs=339.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHH
Q 003885 106 TLALLIGVLTGLAAVFCNFFVENIAGFKLLLINNLMLNDRHFMGFVANTSINLGLAILAAILCAYIAPAAAGSGIPEVKA 185 (789)
Q Consensus 106 ~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~ 185 (789)
++++++|+++|+++.+|+..+++++++++....... ...+..|+.+++++.++++++++++.+++|.++|||||||++
T Consensus 22 ~~~~liGi~~Gl~~~~f~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGip~v~~ 99 (446)
T 4ene_A 22 FMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTA--DNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEIEG 99 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--SSHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSSCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHH
Confidence 479999999999999999999999999987654321 223334555566677788888999999999999999999999
Q ss_pred HHhCCCCCCccchhhHHHHHHhhhhhhhccccccCchhHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhh-hHHH
Q 003885 186 YLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRR-DLIT 264 (789)
Q Consensus 186 ~lng~~~~~~l~~~~l~~K~~~~i~sv~sG~svG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r-~lv~ 264 (789)
+++|. .+..++|+++.|++++++++++|+|+|||||++|+||++|++++| ++|. +++|+| ++++
T Consensus 100 ~l~~~--~~~~~~r~~~~k~~~~~lti~~G~s~GrEGP~vqiGa~ig~~~~~-----------~~~~--~~~~~r~~ll~ 164 (446)
T 4ene_A 100 ALEDQ--RPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLD-----------IFRL--KGDEARHTLLA 164 (446)
T ss_dssp HHHTC--SCCCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHH-----------HTTC--CSHHHHHHHHH
T ss_pred HHhCC--CccchHHHHHHHHHHHHHHHhcCCccCCcchHHHHHHHHHHHHHH-----------HcCC--CHHHHHHHHHH
Confidence 99984 234458999999999999999999999999999999999999997 3332 567776 9999
Q ss_pred hhhhhhhhhhccCcchhhhHHHhHhhhhhhh--hhHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCcceEEeccCCCC
Q 003885 265 CGAAAGVAGAFRAPVGGVLFALEEAASWWRS--ALLWRTFFTTAVVAVVLRGFIEFCRSGRCGLFGQGGLIMFDVNSAKN 342 (789)
Q Consensus 265 ~GaAAGvaaaF~APigGvLFalE~~~~~~~~--~~~~~~f~~~~va~~v~~~l~~~~~~~~~~~f~~~~~~~f~~~~~~~ 342 (789)
||+|||+||+|||||+|++|++||+.++|+. +.++++++++.+++++.+.+ +++.+ .|+++. ..
T Consensus 165 aGaaAG~aaaF~aPlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v~~~~-----------~g~~~--~~~~~~-~~ 230 (446)
T 4ene_A 165 TGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIF-----------NHEVA--LIDVGK-LS 230 (446)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTSCSSSCCCCCHHHHHHHHHHHHHHHHHT-----------TTTCC--SCCCCC-CC
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH-----------cCCCc--eeecCC-CC
Confidence 9999999999999999999999999988776 56889999999998888764 23333 344442 34
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhhhhhcccccccccCCCCCCcccC
Q 003885 343 SYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFKVLLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEAD 422 (789)
Q Consensus 343 ~~~~~~l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~ 422 (789)
.++..++++++++|+++|++|.+|++++.++.+++++++.+...+.++.+.+++++++++.++.|..
T Consensus 231 ~~~~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~l~~~~p~~------------- 297 (446)
T 4ene_A 231 DAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPAT------------- 297 (446)
T ss_dssp CCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCGGG-------------
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHhHhh-------------
Confidence 4567899999999999999999999999999998887653333333445566777888888777754
Q ss_pred CCCCCCCCCCccccccCCCcchhhhhhhccCchHHHHhhhcCCCCccchHHHHHHHHHHHHHHHHHHhcCcCCcccchHH
Q 003885 423 RCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPV 502 (789)
Q Consensus 423 ~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~L~~~~~~k~~lt~~t~g~g~~gG~f~P~ 502 (789)
.| +.| +.++.++++ ++++..|+++++.|+++|++|+|+|+|||+|+|+
T Consensus 298 ----~G------------~G~------------~~i~~~~~~----~~~~~~L~~~~~~K~~~t~lt~gsG~~GGif~Ps 345 (446)
T 4ene_A 298 ----SG------------GGF------------NLIPIATAG----NFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPM 345 (446)
T ss_dssp ----SS------------CCS------------THHHHHHTT----CSCHHHHHHHHHHHHHHHHHHHTTTCSSBSHHHH
T ss_pred ----cC------------CcH------------HHHHHHHcC----CchHHHHHHHHHHHHHHHHHHHccCCCcchhHHH
Confidence 12 113 234444443 4567788889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhc---cCcchHHHHHHHHHhhhhhhchhhHHHHhHHHhhcCCCccHHHHHHHHHHHHHHHHhh-
Q 003885 503 ILAGASYGRLVGNLLGAL---SDLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKTVADSF- 578 (789)
Q Consensus 503 l~iGa~~G~l~g~~~~~~---~~~~~~~~alvGaaA~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~- 578 (789)
+++||++|+++|.+++.. ...+|+.||++||||+++|++|+|+|+++|++|+||++++++|+|+++++|+++++.+
T Consensus 346 l~iGA~~G~~~g~~~~~~~p~~~~~~~~~a~vGmaa~~a~~~~aPlt~~vl~~Eltg~~~~~lpl~ia~~ia~~v~~~~~ 425 (446)
T 4ene_A 346 LALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFTG 425 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHTHHHHHHTCCHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHCChhHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999988753 2478999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHH
Q 003885 579 NQGVYDQIVKL 589 (789)
Q Consensus 579 ~~~iy~~~l~~ 589 (789)
++++||.++++
T Consensus 426 ~~~iY~~~l~r 436 (446)
T 4ene_A 426 GKPLYSAILAR 436 (446)
T ss_dssp CCCHHHHHHHH
T ss_pred CCChHHHHHHH
Confidence 79999998875
No 5
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=99.84 E-value=9.7e-21 Score=197.43 Aligned_cols=177 Identities=23% Similarity=0.340 Sum_probs=124.2
Q ss_pred CcccccccccccccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCcc
Q 003885 593 PYLEAHAEPYMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKF 672 (789)
Q Consensus 593 p~l~~~~~~~l~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~ 672 (789)
|.|.+..+ .+.+++|+|+|+++++++.+++++.++.++|.++++++|||||++ ++++++|+|+++||+.++.+...
T Consensus 1 P~L~~~~~-~~~~~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~---~~~~LvGiIt~~dl~~~l~~~~~ 76 (250)
T 2d4z_A 1 PELSWSSA-NKYNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTP---DTNTLLGSIDRTEVEGLLQRRIS 76 (250)
T ss_dssp --CCCCCC-CCSSCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCT---TTCBEEEEEEHHHHHHHHHHHHH
T ss_pred CCCCCCCc-ccCCCChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecC---CCCeEEEEEEHHHHHHHHHHhhh
Confidence 56666655 778899999999999999999999999999999999999999974 23689999999999988764321
Q ss_pred ccccc-cC----------Ccc-------cccccchhhhcc----------------------------------------
Q 003885 673 TKQKT-MT----------GSD-------IMRRFKAHDFAK---------------------------------------- 694 (789)
Q Consensus 673 ~~~~~-~~----------~~~-------~~~~~~~~d~~~---------------------------------------- 694 (789)
...+. .. ..+ ....+...+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 156 (250)
T 2d4z_A 77 AYRRQPAAAAEADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKK 156 (250)
T ss_dssp TTSSSCCCCCCBCCC-----------------------------------------------------------------
T ss_pred hhhhhhhhhhcccccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccc
Confidence 11100 00 000 000000000000
Q ss_pred -ccCCCCCcccccccchhh--------hhhcccccc-cccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEE
Q 003885 695 -AGSGKGVKLEDLDIKEEE--------MEMFVDLHP-ITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIV 764 (789)
Q Consensus 695 -~~~~~~~~i~di~l~~~~--------~~~~~dL~~-im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vv 764 (789)
....+..+..+++++.++ ++..+|+++ +|+++|++|.+++||.+++.+|+++|++|+||++ +|+++
T Consensus 157 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~----~GrLV 232 (250)
T 2d4z_A 157 QKGTGQVASRFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS----MGKLV 232 (250)
T ss_dssp ----------CCSCCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE----TTEEE
T ss_pred cccccccCcccccccChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE----CCEEE
Confidence 000001122333444333 667888885 7999999999999999999999999999999998 58999
Q ss_pred EEEecccCcchhh
Q 003885 765 GILTRHDFMPEHV 777 (789)
Q Consensus 765 GIITr~DLl~~~~ 777 (789)
|||||+||+++..
T Consensus 233 GIVTrkDl~kai~ 245 (250)
T 2d4z_A 233 GVVALAEIQAAIE 245 (250)
T ss_dssp EEEEHHHHHHHHH
T ss_pred EEEEHHHHHHHHH
Confidence 9999999998654
No 6
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=99.74 E-value=6.4e-19 Score=172.90 Aligned_cols=151 Identities=17% Similarity=0.200 Sum_probs=114.0
Q ss_pred cccccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCc
Q 003885 602 YMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGS 681 (789)
Q Consensus 602 ~l~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~ 681 (789)
.+++++|+|+|+++++++++++++.++++.|.+++++++||+|++ ++++|+|+.+|++..+..........
T Consensus 14 ~l~~~~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-----g~lvGiit~~Dll~~~~~~~~~~~~~---- 84 (170)
T 4esy_A 14 AIRQVPIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQN-----GHLVGIITESDFLRGSIPFWIYEASE---- 84 (170)
T ss_dssp HHHTSBGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTT-----SCEEEEEEGGGGGGGTCCTTHHHHHH----
T ss_pred HHcCCCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCC-----ccEEEEEEHHHHHHHHhhccccchhh----
Confidence 367899999999999999999999999999999999999999987 89999999999965443211100000
Q ss_pred ccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCC
Q 003885 682 DIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRP 761 (789)
Q Consensus 682 ~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~ 761 (789)
.........+.. ...+......+.++|++++++|.+++++.+|+++|.+.+++++||+| +|
T Consensus 85 ~~~~~~~~~~~~---------------~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd----~g 145 (170)
T 4esy_A 85 ILSRAIPAPEVE---------------HLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ----DG 145 (170)
T ss_dssp HHTTTSCHHHHH---------------HHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE----TT
T ss_pred hhhhccchhhHH---------------hhhccccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE----CC
Confidence 000000000000 00011123567889999999999999999999999999999999998 47
Q ss_pred CEEEEEecccCcchhhhcc
Q 003885 762 PIVGILTRHDFMPEHVLGL 780 (789)
Q Consensus 762 ~vvGIITr~DLl~~~~~~~ 780 (789)
+++||||++||+++...+-
T Consensus 146 ~lvGivt~~Dil~~l~~~~ 164 (170)
T 4esy_A 146 VPVGIVTRRDLLKLLLLEE 164 (170)
T ss_dssp EEEEEEEHHHHTTTSCCC-
T ss_pred EEEEEEEHHHHHHHHHhcc
Confidence 8999999999999776553
No 7
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=99.68 E-value=1.3e-16 Score=152.29 Aligned_cols=127 Identities=17% Similarity=0.210 Sum_probs=111.5
Q ss_pred cccccceeecccC--CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccC
Q 003885 602 YMKNLVASDVVSG--PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMT 679 (789)
Q Consensus 602 ~l~~l~v~dvM~~--~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~ 679 (789)
.+++++|+|+|++ +++++++++++.++++.|.+++++.+||+|++ .++++|+|+.+||+..+.+..
T Consensus 19 ~l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~----~~~lvGivt~~dl~~~~~~~~-------- 86 (148)
T 3lv9_A 19 EFEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKN----KDDILGFVHIRDLYNQKINEN-------- 86 (148)
T ss_dssp GGGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSS----TTSEEEEEEHHHHHHHHHHHS--------
T ss_pred ccCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCC----CCcEEEEEEHHHHHHHHhcCC--------
Confidence 3678899999998 99999999999999999999999999999874 158999999999987764310
Q ss_pred CcccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCC
Q 003885 680 GSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPG 759 (789)
Q Consensus 680 ~~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~ 759 (789)
..+++++| +++.++++++++.+++++|.+.+.+++||+|+
T Consensus 87 ------------------------------------~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~--- 126 (148)
T 3lv9_A 87 ------------------------------------KIELEEIL-RDIIYISENLTIDKALERIRKEKLQLAIVVDE--- 126 (148)
T ss_dssp ------------------------------------CCCGGGTC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEECT---
T ss_pred ------------------------------------CccHHHhc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeC---
Confidence 13457788 88999999999999999999999999999997
Q ss_pred CCCEEEEEecccCcchhhhcc
Q 003885 760 RPPIVGILTRHDFMPEHVLGL 780 (789)
Q Consensus 760 ~~~vvGIITr~DLl~~~~~~~ 780 (789)
+|+++|+||++|++++...++
T Consensus 127 ~g~~~Giit~~dil~~l~~~i 147 (148)
T 3lv9_A 127 YGGTSGVVTIEDILEEIVGEI 147 (148)
T ss_dssp TSSEEEEEEHHHHHHHHHHTC
T ss_pred CCCEEEEEEHHHHHHHHhCcC
Confidence 789999999999999877653
No 8
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=99.67 E-value=8.6e-17 Score=150.51 Aligned_cols=127 Identities=17% Similarity=0.156 Sum_probs=105.5
Q ss_pred ccceeecccC--CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcc
Q 003885 605 NLVASDVVSG--PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSD 682 (789)
Q Consensus 605 ~l~v~dvM~~--~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~ 682 (789)
+++|+|+|++ ++++++++++++++++.|.+++++.+||+|++ .++++|+|+.+|++..+.+....
T Consensus 1 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~----~~~lvGivt~~dl~~~~~~~~~~--------- 67 (130)
T 3hf7_A 1 KVSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDS----LDDAISMLRVREAYRLMTEKKEF--------- 67 (130)
T ss_dssp CCBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSS----GGGEEEEEEHHHHHHHHTSSSCC---------
T ss_pred CcCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCC----CCcEEEEEEHHHHHHHHhccCcc---------
Confidence 3689999974 78999999999999999999999999999752 17999999999998876531100
Q ss_pred cccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCC
Q 003885 683 IMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPP 762 (789)
Q Consensus 683 ~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~ 762 (789)
....++++| +++.++++++++.+++++|.+.+.+++||+|+ +|+
T Consensus 68 --------------------------------~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~---~g~ 111 (130)
T 3hf7_A 68 --------------------------------TKEIMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE---YGD 111 (130)
T ss_dssp --------------------------------CHHHHHHHS-BCCCEEETTCBHHHHHHHHHHHCCCEEEEECT---TSC
T ss_pred --------------------------------chhhHHHhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcC---CCC
Confidence 012345577 67889999999999999999999999999998 789
Q ss_pred EEEEEecccCcchhhhcc
Q 003885 763 IVGILTRHDFMPEHVLGL 780 (789)
Q Consensus 763 vvGIITr~DLl~~~~~~~ 780 (789)
++||||++|++++...++
T Consensus 112 lvGiit~~Dil~~l~g~i 129 (130)
T 3hf7_A 112 IQGLVTVEDILEEIVGDF 129 (130)
T ss_dssp EEEEEEHHHHHHHHHC--
T ss_pred EEEEeeHHHHHHHHhCCC
Confidence 999999999999876543
No 9
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=99.67 E-value=1.7e-16 Score=145.92 Aligned_cols=120 Identities=21% Similarity=0.241 Sum_probs=106.8
Q ss_pred cceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCccccc
Q 003885 606 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMR 685 (789)
Q Consensus 606 l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~ 685 (789)
.+++|+|++++.++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+|+...+.+..
T Consensus 1 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----~~~~G~vt~~dl~~~~~~~~-------------- 61 (122)
T 3kpb_A 1 TLVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEH-----GKLVGIITSWDIAKALAQNK-------------- 61 (122)
T ss_dssp CBHHHHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTT-----SBEEEEECHHHHHHHHHTTC--------------
T ss_pred CchHHhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCC-----CCEEEEEEHHHHHHHHHhcc--------------
Confidence 36889999999999999999999999999999999999976 89999999999987764310
Q ss_pred ccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEE
Q 003885 686 RFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVG 765 (789)
Q Consensus 686 ~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvG 765 (789)
..++++|++++.++.+++++.+++++|.+.+.+++||+|+ +|+++|
T Consensus 62 -------------------------------~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~---~g~~~G 107 (122)
T 3kpb_A 62 -------------------------------KTIEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDD---YRRVVG 107 (122)
T ss_dssp -------------------------------CBGGGTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECT---TCBEEE
T ss_pred -------------------------------cCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECC---CCCEEE
Confidence 1356788889999999999999999999999999999997 799999
Q ss_pred EEecccCcchhhh
Q 003885 766 ILTRHDFMPEHVL 778 (789)
Q Consensus 766 IITr~DLl~~~~~ 778 (789)
+||++|+++...+
T Consensus 108 ivt~~dl~~~l~~ 120 (122)
T 3kpb_A 108 IVTSEDISRLFGG 120 (122)
T ss_dssp EEEHHHHHHHHC-
T ss_pred EEeHHHHHHHhhc
Confidence 9999999987543
No 10
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=99.67 E-value=2.5e-16 Score=154.81 Aligned_cols=128 Identities=15% Similarity=0.206 Sum_probs=109.3
Q ss_pred ccccceeeccc--CCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCC
Q 003885 603 MKNLVASDVVS--GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTG 680 (789)
Q Consensus 603 l~~l~v~dvM~--~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~ 680 (789)
++.++|+|+|+ ++++++++++++.++++.|.+++++.+||+|++ .++++|+|+.+||+..+.+..
T Consensus 39 l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~----~~~lvGivt~~dl~~~~~~~~--------- 105 (172)
T 3lhh_A 39 LDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNN----VDDMVGIISAKQLLSESIAGE--------- 105 (172)
T ss_dssp ----CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSS----TTSEEEEEEHHHHHHHHHTTC---------
T ss_pred cCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCC----CCeEEEEEEHHHHHHHHhhcC---------
Confidence 56789999999 789999999999999999999999999999873 168999999999987764310
Q ss_pred cccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCC
Q 003885 681 SDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGR 760 (789)
Q Consensus 681 ~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~ 760 (789)
...++++| +++++|++++++.+++++|.+.+.+++||+|+ +
T Consensus 106 -----------------------------------~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~---~ 146 (172)
T 3lhh_A 106 -----------------------------------RLELVDLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDE---Y 146 (172)
T ss_dssp -----------------------------------CCCGGGGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECT---T
T ss_pred -----------------------------------cccHHHHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeC---C
Confidence 13467789 89999999999999999999999999999997 7
Q ss_pred CCEEEEEecccCcchhhhccCc
Q 003885 761 PPIVGILTRHDFMPEHVLGLYP 782 (789)
Q Consensus 761 ~~vvGIITr~DLl~~~~~~~~~ 782 (789)
|+++||||++|++++...++..
T Consensus 147 g~lvGiit~~Dil~~l~~~~~d 168 (172)
T 3lhh_A 147 GDLKGLVTLQDMMDALTGEFFQ 168 (172)
T ss_dssp SCEEEEEEHHHHHHHHHTTCC-
T ss_pred CCEEEEeeHHHHHHHHhCCCcc
Confidence 8999999999999988876654
No 11
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=99.66 E-value=1.1e-16 Score=150.87 Aligned_cols=128 Identities=20% Similarity=0.256 Sum_probs=104.5
Q ss_pred ccceeeccc--CCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcc
Q 003885 605 NLVASDVVS--GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSD 682 (789)
Q Consensus 605 ~l~v~dvM~--~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~ 682 (789)
+++|+|+|+ ++++++++++++.++++.|.+++++.+||+|++ .++++|+|+.+||+..+.+..
T Consensus 2 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~----~~~~vGivt~~dl~~~~~~~~----------- 66 (136)
T 3lfr_A 2 DLQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGES----HDDVLGVLLAKDLLPLILKAD----------- 66 (136)
T ss_dssp -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSS----TTCEEEEEEGGGGGGGGGSSS-----------
T ss_pred CCChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCC----CCcEEEEEEHHHHHHHHHhcc-----------
Confidence 578999999 678999999999999999999999999999874 159999999999966543200
Q ss_pred cccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCC
Q 003885 683 IMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPP 762 (789)
Q Consensus 683 ~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~ 762 (789)
.....++++|++ +.++++++++.+++++|.+.+.+++||+|+ +|+
T Consensus 67 -------------------------------~~~~~v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~---~g~ 111 (136)
T 3lfr_A 67 -------------------------------GDSDDVKKLLRP-ATFVPESKRLNVLLREFRANHNHMAIVIDE---YGG 111 (136)
T ss_dssp -------------------------------GGGCCGGGTCBC-CCEEETTCBHHHHHHHHHHHTCCEEEEECT---TSC
T ss_pred -------------------------------CCCcCHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeC---CCC
Confidence 012346778866 899999999999999999999999999998 789
Q ss_pred EEEEEecccCcchhhhccCc
Q 003885 763 IVGILTRHDFMPEHVLGLYP 782 (789)
Q Consensus 763 vvGIITr~DLl~~~~~~~~~ 782 (789)
++||||++|+++....++..
T Consensus 112 lvGiit~~Dil~~l~~~~~d 131 (136)
T 3lfr_A 112 VAGLVTIEDVLEQIVGDIED 131 (136)
T ss_dssp EEEEEEHHHHHTTC------
T ss_pred EEEEEEHHHHHHHHhCCCcC
Confidence 99999999999988776654
No 12
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=99.66 E-value=1.8e-16 Score=147.97 Aligned_cols=125 Identities=15% Similarity=0.173 Sum_probs=103.8
Q ss_pred ccccceeecccC--CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCC
Q 003885 603 MKNLVASDVVSG--PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTG 680 (789)
Q Consensus 603 l~~l~v~dvM~~--~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~ 680 (789)
+++++|+|+|++ +++++++++++.++++.|.+++++.+||+|++ .++++|+|+.+||+..+.+..
T Consensus 3 l~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~----~~~~~Givt~~dl~~~~~~~~--------- 69 (130)
T 3i8n_A 3 AQDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQ----KDNIIGFVHRLELFKMQQSGS--------- 69 (130)
T ss_dssp ----CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSS----TTCEEEECCHHHHHHHHHTTT---------
T ss_pred cCcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCC----CCcEEEEEEHHHHHHHHhcCC---------
Confidence 567899999995 57799999999999999999999999999863 269999999999988765311
Q ss_pred cccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCC
Q 003885 681 SDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGR 760 (789)
Q Consensus 681 ~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~ 760 (789)
....++++| +++.++++++++.+++++|.+.+.+++||+|+ +
T Consensus 70 ----------------------------------~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~---~ 111 (130)
T 3i8n_A 70 ----------------------------------GQKQLGAVM-RPIQVVLNNTALPKVFDQMMTHRLQLALVVDE---Y 111 (130)
T ss_dssp ----------------------------------TTSBHHHHS-EECCEEETTSCHHHHHHHHHHHTCCEEEEECT---T
T ss_pred ----------------------------------CcCCHHHHh-cCCcCcCCCCcHHHHHHHHHHcCCeEEEEEcC---C
Confidence 012356677 45789999999999999999999999999997 7
Q ss_pred CCEEEEEecccCcchhhh
Q 003885 761 PPIVGILTRHDFMPEHVL 778 (789)
Q Consensus 761 ~~vvGIITr~DLl~~~~~ 778 (789)
|+++|+||++|++++...
T Consensus 112 g~~vGivt~~dil~~l~g 129 (130)
T 3i8n_A 112 GTVLGLVTLEDIFEHLVG 129 (130)
T ss_dssp SCEEEEEEHHHHHHHHHT
T ss_pred CCEEEEEEHHHHHHHHcC
Confidence 899999999999987653
No 13
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=99.66 E-value=4.9e-16 Score=145.21 Aligned_cols=127 Identities=18% Similarity=0.251 Sum_probs=110.8
Q ss_pred ccccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcc
Q 003885 603 MKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSD 682 (789)
Q Consensus 603 l~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~ 682 (789)
+++++++|+|.+++.++++++++.++.+.|.+++++.+||+| + ++++|+|+.+|+...+.+...
T Consensus 1 l~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-----~~~~Givt~~dl~~~~~~~~~---------- 64 (133)
T 2ef7_A 1 MEEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-G-----NKPVGIITERDIVKAIGKGKS---------- 64 (133)
T ss_dssp CCCCBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-T-----TEEEEEEEHHHHHHHHHTTCC----------
T ss_pred CCcccHHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-C-----CEEEEEEcHHHHHHHHhcCCC----------
Confidence 457899999999999999999999999999999999999999 5 899999999999877653110
Q ss_pred cccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCC
Q 003885 683 IMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPP 762 (789)
Q Consensus 683 ~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~ 762 (789)
....++++|++++.++++++++.++++.|.+.+.+++||+|+ +|+
T Consensus 65 --------------------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~---~g~ 109 (133)
T 2ef7_A 65 --------------------------------LETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDD---KGN 109 (133)
T ss_dssp --------------------------------TTCBGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECT---TSC
T ss_pred --------------------------------cccCHHHHcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECC---CCe
Confidence 013457788889999999999999999999999999999997 789
Q ss_pred EEEEEecccCcchhhhcc
Q 003885 763 IVGILTRHDFMPEHVLGL 780 (789)
Q Consensus 763 vvGIITr~DLl~~~~~~~ 780 (789)
++|+||++|+++...+..
T Consensus 110 ~~Giit~~dll~~~~~~~ 127 (133)
T 2ef7_A 110 LKGIISIRDITRAIDDMF 127 (133)
T ss_dssp EEEEEEHHHHHHHHHHHC
T ss_pred EEEEEEHHHHHHHHHHHH
Confidence 999999999998776543
No 14
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=99.65 E-value=1.4e-16 Score=148.65 Aligned_cols=124 Identities=17% Similarity=0.259 Sum_probs=104.6
Q ss_pred cccceeeccc--CCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCc
Q 003885 604 KNLVASDVVS--GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGS 681 (789)
Q Consensus 604 ~~l~v~dvM~--~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~ 681 (789)
.+++|+|+|+ ++++++++++++.++.+.|.+++++.+||+|++ .++++|+|+.+|++..+.+.
T Consensus 3 ~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~----~~~~~Givt~~dl~~~~~~~----------- 67 (129)
T 3jtf_A 3 AERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDD----RDNIIGILLAKDLLRYMLEP----------- 67 (129)
T ss_dssp -CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSS----TTCEEEEEEGGGGGGGGTCT-----------
T ss_pred CCCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCC----CCcEEEEEEHHHHHhHhccC-----------
Confidence 4678999999 678999999999999999999999999999873 17999999999995543210
Q ss_pred ccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCC
Q 003885 682 DIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRP 761 (789)
Q Consensus 682 ~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~ 761 (789)
..+++++|+ +++++++++++.+++++|.+.+.+++||+|+ +|
T Consensus 68 ----------------------------------~~~v~~~m~-~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~---~g 109 (129)
T 3jtf_A 68 ----------------------------------ALDIRSLVR-PAVFIPEVKRLNVLLREFRASRNHLAIVIDE---HG 109 (129)
T ss_dssp ----------------------------------TSCGGGGCB-CCCEEETTCBHHHHHHHHHTSSCCEEEEECC----C
T ss_pred ----------------------------------CcCHHHHhC-CCeEeCCCCcHHHHHHHHHhcCCeEEEEEeC---CC
Confidence 123566775 4889999999999999999999999999997 78
Q ss_pred CEEEEEecccCcchhhhcc
Q 003885 762 PIVGILTRHDFMPEHVLGL 780 (789)
Q Consensus 762 ~vvGIITr~DLl~~~~~~~ 780 (789)
+++|+||++|++++...++
T Consensus 110 ~~~Giit~~Dil~~l~gei 128 (129)
T 3jtf_A 110 GISGLVTMEDVLEQIVGDI 128 (129)
T ss_dssp CEEEEEEHHHHHHHHHHTC
T ss_pred CEEEEEEHHHHHHHHhCCC
Confidence 9999999999999877654
No 15
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=99.65 E-value=7.1e-16 Score=145.87 Aligned_cols=122 Identities=18% Similarity=0.247 Sum_probs=106.9
Q ss_pred ccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCC--eEEEEEehHHHHHHHhcCccccccccCCcc
Q 003885 605 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAP--ELCGLVLRSHLLVLLKGKKFTKQKTMTGSD 682 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~--~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~ 682 (789)
+++++|+|+++++++++++++.++++.|.+++++.+||+|++ + +++|+|+++|++..+.+..
T Consensus 4 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----~~~~~~Givt~~dl~~~~~~~~----------- 67 (141)
T 2rih_A 4 AIRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARD-----NPKRPVAVVSERDILRAVAQRL----------- 67 (141)
T ss_dssp -CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETT-----EEEEEEEEEEHHHHHHHHHTTC-----------
T ss_pred ceEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-----CcceeEEEEEHHHHHHHHhcCC-----------
Confidence 478999999999999999999999999999999999999986 6 9999999999987664310
Q ss_pred cccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCC
Q 003885 683 IMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPP 762 (789)
Q Consensus 683 ~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~ 762 (789)
+....+.++|++++.++.++ ++.+++++|.+.+.+++||+|+ +|+
T Consensus 68 -------------------------------~~~~~v~~~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~---~g~ 112 (141)
T 2rih_A 68 -------------------------------DLDGPAMPIANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNK---NGE 112 (141)
T ss_dssp -------------------------------CTTSBSGGGCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEECT---TSC
T ss_pred -------------------------------CCCCCHHHHcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcC---CCc
Confidence 00134677899999999999 9999999999999999999997 789
Q ss_pred EEEEEecccCcchhh
Q 003885 763 IVGILTRHDFMPEHV 777 (789)
Q Consensus 763 vvGIITr~DLl~~~~ 777 (789)
++|+||++|++++..
T Consensus 113 ~~Giit~~dll~~~~ 127 (141)
T 2rih_A 113 LVGVLSIRDLCFERA 127 (141)
T ss_dssp EEEEEEHHHHHSCHH
T ss_pred EEEEEEHHHHHHHHH
Confidence 999999999987654
No 16
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=99.64 E-value=3.4e-16 Score=149.72 Aligned_cols=119 Identities=9% Similarity=0.114 Sum_probs=104.9
Q ss_pred cceeecccC--CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCccc
Q 003885 606 LVASDVVSG--PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDI 683 (789)
Q Consensus 606 l~v~dvM~~--~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~ 683 (789)
++|+|+|++ +++++++++++.++++.|.+++++.+||+|++ ++++|+|+++|++..+.+...
T Consensus 28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~-----~~~~Givt~~dl~~~~~~~~~----------- 91 (149)
T 3k2v_A 28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDD-----MNIIGIFTDGDLRRVFDTGVD----------- 91 (149)
T ss_dssp SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTT-----CBEEEEEEHHHHHHHHCSSSC-----------
T ss_pred cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCC-----CcEEEEecHHHHHHHHhcCCC-----------
Confidence 599999999 99999999999999999999999999999976 899999999999887643110
Q ss_pred ccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCE
Q 003885 684 MRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPI 763 (789)
Q Consensus 684 ~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~v 763 (789)
.....+.++|++++.++.+++++.+++++|.+.+.+++||+|+ + ++
T Consensus 92 ------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~-~~ 137 (149)
T 3k2v_A 92 ------------------------------MRDASIADVMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADG---D-HL 137 (149)
T ss_dssp ------------------------------CTTCBHHHHSEESCCEECTTCBHHHHHHHHHHHTCSEEEEEET---T-EE
T ss_pred ------------------------------cccCcHHHHcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecC---C-EE
Confidence 0013456788889999999999999999999999999999996 4 99
Q ss_pred EEEEecccCcc
Q 003885 764 VGILTRHDFMP 774 (789)
Q Consensus 764 vGIITr~DLl~ 774 (789)
+|+||++|+++
T Consensus 138 ~Giit~~dil~ 148 (149)
T 3k2v_A 138 LGVVHMHDLLR 148 (149)
T ss_dssp EEEEEHHHHTC
T ss_pred EEEEEHHHhhc
Confidence 99999999986
No 17
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=99.64 E-value=2.1e-16 Score=151.98 Aligned_cols=129 Identities=18% Similarity=0.194 Sum_probs=109.4
Q ss_pred ccccceeecccC--CeEEecCCCcHHHHHHHHhhcCCCeeEEe-eCCCCCCCCeEEEEEehHHHHHHHhcCccccccccC
Q 003885 603 MKNLVASDVVSG--PLITFSGVEKVGNIMHALRLTRHNGFPVI-DEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMT 679 (789)
Q Consensus 603 l~~l~v~dvM~~--~vvtv~~~~~V~~~~~~L~~~~~~~fPVV-d~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~ 679 (789)
+++++|+|+|++ +++++++++++.++++.|.+++++.+||+ |++ .++++|+|+.+||+..+.+..
T Consensus 17 l~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~----~~~lvGivt~~dl~~~~~~~~-------- 84 (153)
T 3oco_A 17 MNDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADND----KDKIIGYAYNYDIVRQARIDD-------- 84 (153)
T ss_dssp HHHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTE----EEEEEEEEEHHHHHHHHHHHT--------
T ss_pred cCCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCC----CCcEEEEEEHHHHHhHHhcCC--------
Confidence 467899999997 89999999999999999999999999999 542 179999999999987764310
Q ss_pred CcccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCC
Q 003885 680 GSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPG 759 (789)
Q Consensus 680 ~~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~ 759 (789)
...++++| +++.++.+++++.+|+++|.+.+.+++||+|+
T Consensus 85 ------------------------------------~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~--- 124 (153)
T 3oco_A 85 ------------------------------------KAKISTIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDE--- 124 (153)
T ss_dssp ------------------------------------TSBGGGTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECT---
T ss_pred ------------------------------------CCcHHHHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeC---
Confidence 13467789 89999999999999999999999999999997
Q ss_pred CCCEEEEEecccCcchhhhccCcc
Q 003885 760 RPPIVGILTRHDFMPEHVLGLYPH 783 (789)
Q Consensus 760 ~~~vvGIITr~DLl~~~~~~~~~~ 783 (789)
+|+++||||++|++++...++...
T Consensus 125 ~g~~vGivt~~dil~~l~~~~~de 148 (153)
T 3oco_A 125 YGGTSGIITDKDVYEELFGNLRDE 148 (153)
T ss_dssp TSCEEEEECHHHHHHHHHC-----
T ss_pred CCCEEEEeeHHHHHHHHhccCCCc
Confidence 789999999999999888776554
No 18
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=99.64 E-value=2.7e-16 Score=146.34 Aligned_cols=124 Identities=14% Similarity=0.045 Sum_probs=108.1
Q ss_pred cccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCccc
Q 003885 604 KNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDI 683 (789)
Q Consensus 604 ~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~ 683 (789)
.+++++|+|.+++.++++++++.++.+.|.+++++.+||+|+ ++++|+|+.+|+...+.+..
T Consensus 3 ~s~~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~------~~~~Givt~~dl~~~~~~~~------------ 64 (128)
T 3gby_A 3 ASVTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG------ERYLGMVHLSRLLEGRKGWP------------ 64 (128)
T ss_dssp TTCBGGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET------TEEEEEEEHHHHHTTCSSSC------------
T ss_pred cceEHHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC------CEEEEEEEHHHHHHHHhhCC------------
Confidence 468999999999999999999999999999999999999997 69999999999965432210
Q ss_pred ccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCE
Q 003885 684 MRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPI 763 (789)
Q Consensus 684 ~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~v 763 (789)
.....++++|++++.++.+++++.+++++|.+.+.+++||+|+ +|++
T Consensus 65 ------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~---~g~~ 111 (128)
T 3gby_A 65 ------------------------------TVKEKLGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADE---DGRY 111 (128)
T ss_dssp ------------------------------CTTCBCCGGGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEECT---TCBE
T ss_pred ------------------------------cccCcHHHHccCCCcEECCCCCHHHHHHHHHhCCCcEEEEECC---CCCE
Confidence 0013467789999999999999999999999999999999997 8899
Q ss_pred EEEEecccCcchhhh
Q 003885 764 VGILTRHDFMPEHVL 778 (789)
Q Consensus 764 vGIITr~DLl~~~~~ 778 (789)
+|+||++|+++...+
T Consensus 112 ~Giit~~dll~~l~~ 126 (128)
T 3gby_A 112 EGVVSRKRILGFLAE 126 (128)
T ss_dssp EEEEEHHHHHHHHHT
T ss_pred EEEEEHHHHHHHHHh
Confidence 999999999987654
No 19
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=99.64 E-value=4e-16 Score=146.69 Aligned_cols=128 Identities=22% Similarity=0.286 Sum_probs=109.7
Q ss_pred cccccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHH-HHHHhcCccccccccCC
Q 003885 602 YMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHL-LVLLKGKKFTKQKTMTG 680 (789)
Q Consensus 602 ~l~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dL-l~lL~~~~~~~~~~~~~ 680 (789)
.+.+.+++|+|++++.++++++++.++.+.|.+++++.+||+|++ ++++|+|+++|+ ...+.+...
T Consensus 4 ~l~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----~~~~Givt~~dl~~~~~~~~~~-------- 70 (138)
T 2p9m_A 4 TLKNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDE-----NKVIGIVTTTDIGYNLIRDKYT-------- 70 (138)
T ss_dssp -CTTCBGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTT-----CBEEEEEEHHHHHHHHTTTCCC--------
T ss_pred ccccCCHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCC-----CeEEEEEEHHHHHHHHHhhccc--------
Confidence 467889999999999999999999999999999999999999976 899999999999 776542100
Q ss_pred cccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcC-----CCeEEEee
Q 003885 681 SDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLA-----LRHLCVVP 755 (789)
Q Consensus 681 ~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~g-----lr~LpVVd 755 (789)
....++++|++++.++.+++++.+++++|.+.+ .+++||+|
T Consensus 71 ----------------------------------~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd 116 (138)
T 2p9m_A 71 ----------------------------------LETTIGDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVD 116 (138)
T ss_dssp ----------------------------------SSCBHHHHSCSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEEC
T ss_pred ----------------------------------CCcCHHHHhCCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEEC
Confidence 012456788889999999999999999999999 99999999
Q ss_pred CCCCCCCEEEEEecccCcchhhhc
Q 003885 756 KTPGRPPIVGILTRHDFMPEHVLG 779 (789)
Q Consensus 756 ~~~~~~~vvGIITr~DLl~~~~~~ 779 (789)
+ +|+++|+||++|+++...++
T Consensus 117 ~---~g~~~Giit~~dll~~~~~~ 137 (138)
T 2p9m_A 117 K---NNKLVGIISDGDIIRTISKI 137 (138)
T ss_dssp T---TSBEEEEEEHHHHHHHHHHC
T ss_pred C---CCeEEEEEEHHHHHHHHHhh
Confidence 7 78999999999999876554
No 20
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=99.64 E-value=1.3e-16 Score=148.27 Aligned_cols=122 Identities=18% Similarity=0.298 Sum_probs=102.4
Q ss_pred ccceeecccCC--eEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcc
Q 003885 605 NLVASDVVSGP--LITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSD 682 (789)
Q Consensus 605 ~l~v~dvM~~~--vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~ 682 (789)
+++|+|+|+++ ++++++++++.++++.|.+++++.+||+|++ .++++|+|+.+||+..+.+..
T Consensus 2 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~----~~~~vGivt~~dl~~~~~~~~----------- 66 (127)
T 3nqr_A 2 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED----KDHIEGILMAKDLLPFMRSDA----------- 66 (127)
T ss_dssp -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSS----TTCEEEEEEGGGGGGGGSTTC-----------
T ss_pred CcCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCC----CCcEEEEEEHHHHHHHHhccC-----------
Confidence 57899999965 9999999999999999999999999999874 159999999999965442210
Q ss_pred cccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCC
Q 003885 683 IMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPP 762 (789)
Q Consensus 683 ~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~ 762 (789)
....++++|++ +.++++++++.+++++|.+.+.+++||+|+ +|+
T Consensus 67 --------------------------------~~~~v~~~m~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~ 110 (127)
T 3nqr_A 67 --------------------------------EAFSMDKVLRT-AVVVPESKRVDRMLKEFRSQRYHMAIVIDE---FGG 110 (127)
T ss_dssp --------------------------------CCCCHHHHCBC-CCEEETTCBHHHHHHHHHHTTCCEEEEECT---TSC
T ss_pred --------------------------------CCCCHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeC---CCC
Confidence 01345667844 789999999999999999999999999998 789
Q ss_pred EEEEEecccCcchhh
Q 003885 763 IVGILTRHDFMPEHV 777 (789)
Q Consensus 763 vvGIITr~DLl~~~~ 777 (789)
++|+||++|++++..
T Consensus 111 ~~Giit~~dll~~l~ 125 (127)
T 3nqr_A 111 VSGLVTIEDILELIV 125 (127)
T ss_dssp EEEEEEHHHHHHHC-
T ss_pred EEEEEEHHHHHHHHh
Confidence 999999999998654
No 21
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=99.64 E-value=1.1e-15 Score=143.87 Aligned_cols=130 Identities=13% Similarity=0.150 Sum_probs=111.5
Q ss_pred ccccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHH-HHhcCccccccccCCc
Q 003885 603 MKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV-LLKGKKFTKQKTMTGS 681 (789)
Q Consensus 603 l~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~-lL~~~~~~~~~~~~~~ 681 (789)
+..++++|+|+++++++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+|++. ++.+..
T Consensus 4 l~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----~~~~Givt~~dl~~~~~~~~~---------- 68 (138)
T 2yzi_A 4 DMKAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDD-----GNVVGFFTKSDIIRRVIVPGL---------- 68 (138)
T ss_dssp CTTSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT-----SCEEEEEEHHHHHHHTTTTCC----------
T ss_pred hhhhhHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----CcEEEEEeHHHHHHHHHhcCC----------
Confidence 56789999999999999999999999999999999999999976 89999999999963 332100
Q ss_pred ccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCC
Q 003885 682 DIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRP 761 (789)
Q Consensus 682 ~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~ 761 (789)
.....+.++|++++.++.+++++.+++++|.+.+.+++ |+|+ +|
T Consensus 69 --------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~---~g 112 (138)
T 2yzi_A 69 --------------------------------PYDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEE---EG 112 (138)
T ss_dssp --------------------------------CTTSBGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEE---TT
T ss_pred --------------------------------cccCCHHHHhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECC---CC
Confidence 00134677899999999999999999999999999999 9997 78
Q ss_pred CEEEEEecccCcchhhhccCcc
Q 003885 762 PIVGILTRHDFMPEHVLGLYPH 783 (789)
Q Consensus 762 ~vvGIITr~DLl~~~~~~~~~~ 783 (789)
+++|+||++|+++...+++...
T Consensus 113 ~~~Giit~~dil~~~~~~~~~~ 134 (138)
T 2yzi_A 113 KIVGIFTLSDLLEASRRRLETA 134 (138)
T ss_dssp EEEEEEEHHHHHHHHHCCSCCC
T ss_pred CEEEEEEHHHHHHHHHHHHHhh
Confidence 9999999999999877665443
No 22
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=99.63 E-value=4e-16 Score=151.04 Aligned_cols=131 Identities=14% Similarity=0.142 Sum_probs=107.6
Q ss_pred cceeecccC--CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCccc
Q 003885 606 LVASDVVSG--PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDI 683 (789)
Q Consensus 606 l~v~dvM~~--~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~ 683 (789)
.+++++|.+ +++++++++++.++++.|.+++++++||+|++ ++++|+|+.+|++..+.......
T Consensus 15 ~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~-----~~lvGiit~~Di~~~~~~~~~~~--------- 80 (156)
T 3k6e_A 15 GQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDE-----KQFVGTIGLRDIMAYQMEHDLSQ--------- 80 (156)
T ss_dssp TTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC------CBEEEEEEHHHHHHHHHHHTCCH---------
T ss_pred ccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCC-----CcEEEEEEecchhhhhhhccccc---------
Confidence 367788975 79999999999999999999999999999986 89999999999987765421100
Q ss_pred ccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCE
Q 003885 684 MRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPI 763 (789)
Q Consensus 684 ~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~v 763 (789)
+.....++.++|++++.++++++++.+|+++|.+.+ .+||||+ +|++
T Consensus 81 ----------------------------~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~---~g~l 127 (156)
T 3k6e_A 81 ----------------------------EIMADTDIVHMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVDA---EGIF 127 (156)
T ss_dssp ----------------------------HHHTTSBGGGTCBCSCCCBCTTCCHHHHHHHTTTSS--EEEEECT---TSBE
T ss_pred ----------------------------ccccccCHHHhhcCCceecccccHHHHHHHHHHHcC--CeEEEec---CCEE
Confidence 001124577899999999999999999999998765 5999998 8999
Q ss_pred EEEEecccCcchhhhccCcc
Q 003885 764 VGILTRHDFMPEHVLGLYPH 783 (789)
Q Consensus 764 vGIITr~DLl~~~~~~~~~~ 783 (789)
+||||++|++++....++..
T Consensus 128 ~GiiT~~Dil~~~~~~~~~~ 147 (156)
T 3k6e_A 128 QGIITRKSILKAVNALLHDF 147 (156)
T ss_dssp EEEEEHHHHHHHHHHHSCC-
T ss_pred EEEEEHHHHHHHHHHHhccc
Confidence 99999999999886655543
No 23
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=99.63 E-value=1.2e-15 Score=147.76 Aligned_cols=130 Identities=18% Similarity=0.156 Sum_probs=110.7
Q ss_pred ccccccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCC
Q 003885 601 PYMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTG 680 (789)
Q Consensus 601 ~~l~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~ 680 (789)
..+..++|+|+|+++ +++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|++..+.....
T Consensus 12 ~~l~~~~v~~im~~~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~-----~~~~Givt~~dl~~~~~~~~~-------- 77 (159)
T 3fv6_A 12 DKLKKLQVKDFQSIP-VVIHENVSVYDAICTMFLEDVGTLFVVDRD-----AVLVGVLSRKDLLRASIGQQE-------- 77 (159)
T ss_dssp HHHTTCBGGGSCBCC-CEEETTSBHHHHHHHHHHHTCSEEEEECTT-----SCEEEEEEHHHHHHHHTSCSC--------
T ss_pred HHHhhCCHHHHcCCC-EEECCCCcHHHHHHHHHHCCCCEEEEEcCC-----CcEEEEEeHHHHHHHhhccCc--------
Confidence 346789999999985 499999999999999999999999999976 899999999999876532100
Q ss_pred cccccccchhhhccccCCCCCcccccccchhhhhhcccccccccC--CCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCC
Q 003885 681 SDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNT--SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTP 758 (789)
Q Consensus 681 ~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~ 758 (789)
.....++++|++ ++.+|.+++++.+|+++|.+.+.+++||+|+
T Consensus 78 ---------------------------------~~~~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-- 122 (159)
T 3fv6_A 78 ---------------------------------LTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKD-- 122 (159)
T ss_dssp ---------------------------------TTTCBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEE--
T ss_pred ---------------------------------ccCcCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeC--
Confidence 001346778887 8899999999999999999999999999997
Q ss_pred CCC---CEEEEEecccCcchhhhcc
Q 003885 759 GRP---PIVGILTRHDFMPEHVLGL 780 (789)
Q Consensus 759 ~~~---~vvGIITr~DLl~~~~~~~ 780 (789)
+| +++|+||++|+++.+.+-.
T Consensus 123 -~g~~~~~vGiit~~dil~~l~~~~ 146 (159)
T 3fv6_A 123 -TDKGFEVIGRVTKTNMTKILVSLS 146 (159)
T ss_dssp -CSSSEEEEEEEEHHHHHHHHHHHH
T ss_pred -CCcceeEEEEEEHHHHHHHHHHHh
Confidence 66 9999999999998776543
No 24
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=99.62 E-value=8.8e-16 Score=149.57 Aligned_cols=136 Identities=11% Similarity=0.113 Sum_probs=114.4
Q ss_pred ccccccccccceeecccC---CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccc
Q 003885 597 AHAEPYMKNLVASDVVSG---PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFT 673 (789)
Q Consensus 597 ~~~~~~l~~l~v~dvM~~---~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~ 673 (789)
......+..++|+|+|++ +++++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|++..+.+...
T Consensus 15 ~~~~~~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-----~~~~Givt~~dl~~~~~~~~~- 88 (165)
T 3fhm_A 15 ENLYFQGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDAD-----GVVLGIFTERDLVKAVAGQGA- 88 (165)
T ss_dssp -CCCCSSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT-----SCEEEEEEHHHHHHHHHHHGG-
T ss_pred chhhHhhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----CeEEEEEEHHHHHHHHHhcCC-
Confidence 344556888999999995 79999999999999999999999999999986 899999999999877653110
Q ss_pred cccccCCcccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEE
Q 003885 674 KQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCV 753 (789)
Q Consensus 674 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpV 753 (789)
......+.++|++++.+|.+++++.+++++|.+.+.+++||
T Consensus 89 ---------------------------------------~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpV 129 (165)
T 3fhm_A 89 ---------------------------------------ASLQQSVSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPV 129 (165)
T ss_dssp ---------------------------------------GGGTSBGGGTSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEE
T ss_pred ---------------------------------------ccccCCHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEE
Confidence 00123567789999999999999999999999999999999
Q ss_pred eeCCCCCCCEEEEEecccCcchhhhccC
Q 003885 754 VPKTPGRPPIVGILTRHDFMPEHVLGLY 781 (789)
Q Consensus 754 Vd~~~~~~~vvGIITr~DLl~~~~~~~~ 781 (789)
+|+ |+++|+||++|+++...++..
T Consensus 130 vd~----g~~~Giit~~dil~~~~~~~~ 153 (165)
T 3fhm_A 130 EEN----GRLAGIISIGDVVKARIGEIE 153 (165)
T ss_dssp EET----TEEEEEEEHHHHHHHTTCC--
T ss_pred EEC----CEEEEEEEHHHHHHHHHHHHH
Confidence 984 789999999999998776543
No 25
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=99.62 E-value=8.7e-16 Score=146.75 Aligned_cols=136 Identities=16% Similarity=0.145 Sum_probs=112.7
Q ss_pred cccccccceeeccc--CCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccc
Q 003885 600 EPYMKNLVASDVVS--GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKT 677 (789)
Q Consensus 600 ~~~l~~l~v~dvM~--~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~ 677 (789)
...+..++|+|+|+ ++++++++++++.++++.|.+++++.+||+|++ ++++|+|+++||+..+.......
T Consensus 9 ~~~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~-----~~~~Givt~~dl~~~~~~~~~~~--- 80 (150)
T 3lqn_A 9 KDEFQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPM-----YKLHGLISTAMILDGILGLERIE--- 80 (150)
T ss_dssp HHHHHHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-----CBEEEEEEHHHHHHHTBCSSSBC---
T ss_pred HHhhhcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCC-----CCEEEEEEHHHHHHHHHhhcccc---
Confidence 34577899999999 469999999999999999999999999999986 89999999999987764311000
Q ss_pred cCCcccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCC
Q 003885 678 MTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKT 757 (789)
Q Consensus 678 ~~~~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~ 757 (789)
.+......+.++|++++.++.+++++.+++++|.+.+. +||||+
T Consensus 81 ---------------------------------~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~- 124 (150)
T 3lqn_A 81 ---------------------------------FERLEEMKVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNE- 124 (150)
T ss_dssp ---------------------------------GGGGGGCBGGGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECT-
T ss_pred ---------------------------------hhHHhcCCHHHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECC-
Confidence 00011345788999999999999999999999999986 999997
Q ss_pred CCCCCEEEEEecccCcchhhhccC
Q 003885 758 PGRPPIVGILTRHDFMPEHVLGLY 781 (789)
Q Consensus 758 ~~~~~vvGIITr~DLl~~~~~~~~ 781 (789)
+|+++|+||++|+++...+.+.
T Consensus 125 --~g~~~Giit~~dil~~l~~~~~ 146 (150)
T 3lqn_A 125 --DGYFEGILTRRAILKLLNKKVR 146 (150)
T ss_dssp --TCBEEEEEEHHHHHHHHHHHC-
T ss_pred --CCcEEEEEEHHHHHHHHHHHhH
Confidence 7899999999999998776554
No 26
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=99.62 E-value=5.1e-16 Score=148.07 Aligned_cols=141 Identities=26% Similarity=0.286 Sum_probs=109.2
Q ss_pred cccceeecccC--CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCc
Q 003885 604 KNLVASDVVSG--PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGS 681 (789)
Q Consensus 604 ~~l~v~dvM~~--~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~ 681 (789)
+.++|+|+|++ +++++++++++.++++.|.+++++.+||+|++ ++++|+|+++|++..+....
T Consensus 3 ~~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----~~~~G~vt~~dl~~~~~~~~---------- 67 (152)
T 4gqw_A 3 GVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDED-----WKLVGLVSDYDLLALDSGDS---------- 67 (152)
T ss_dssp CCSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTT-----CBEEEEEEHHHHTTCC--------------
T ss_pred ceEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCC-----CeEEEEEEHHHHHHhhcccC----------
Confidence 46899999998 89999999999999999999999999999987 89999999999964332100
Q ss_pred ccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCC
Q 003885 682 DIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRP 761 (789)
Q Consensus 682 ~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~ 761 (789)
.+..+.+.. .. . .......+.++|+++++++.+++++.+++++|.+.+.+++||+|+ +|
T Consensus 68 ------~~~~~~~~~--------~~--~--~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~---~g 126 (152)
T 4gqw_A 68 ------TWKTFNAVQ--------KL--L--SKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDS---DG 126 (152)
T ss_dssp ------CCHHHHHHH--------TC---------CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECT---TS
T ss_pred ------cccchHHHH--------HH--H--HHhccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECC---CC
Confidence 000000000 00 0 001124567889999999999999999999999999999999997 78
Q ss_pred CEEEEEecccCcchhhhcc
Q 003885 762 PIVGILTRHDFMPEHVLGL 780 (789)
Q Consensus 762 ~vvGIITr~DLl~~~~~~~ 780 (789)
+++|+||++|+++...+..
T Consensus 127 ~~~Giit~~dil~~~~~~~ 145 (152)
T 4gqw_A 127 KLVGIITRGNVVRAALQIK 145 (152)
T ss_dssp BEEEEEEHHHHHHHHHC--
T ss_pred cEEEEEEHHHHHHHHHhcc
Confidence 9999999999999776543
No 27
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=99.61 E-value=1.2e-15 Score=140.61 Aligned_cols=123 Identities=13% Similarity=0.141 Sum_probs=104.7
Q ss_pred cceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCccccc
Q 003885 606 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMR 685 (789)
Q Consensus 606 l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~ 685 (789)
++++|+|++++.++++++++.++.+.|.+++++.+||+| + ++++|+|+++|++..+.+...
T Consensus 1 m~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-----~~~~G~it~~dl~~~~~~~~~------------- 61 (125)
T 1pbj_A 1 MRVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-E-----GVRVGIVTTWDVLEAIAEGDD------------- 61 (125)
T ss_dssp -CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-T-----TEEEEEEEHHHHHHHHHHTCC-------------
T ss_pred CCHHHhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe-C-----CeeEEEEeHHHHHHHHhcCCc-------------
Confidence 478999999999999999999999999999999999999 5 899999999999876643110
Q ss_pred ccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEE
Q 003885 686 RFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVG 765 (789)
Q Consensus 686 ~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvG 765 (789)
.....++++|++++.++.+++++.+++++|.+.+.+++||+|+ |+++|
T Consensus 62 ----------------------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~----~~~~G 109 (125)
T 1pbj_A 62 ----------------------------LAEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEED----DEIIG 109 (125)
T ss_dssp ----------------------------TTTSBHHHHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEET----TEEEE
T ss_pred ----------------------------ccccCHHHHcCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEEC----CEEEE
Confidence 0013456788889999999999999999999999999999984 78999
Q ss_pred EEecccCcchhhhc
Q 003885 766 ILTRHDFMPEHVLG 779 (789)
Q Consensus 766 IITr~DLl~~~~~~ 779 (789)
+||++|+++...++
T Consensus 110 vit~~dl~~~l~~~ 123 (125)
T 1pbj_A 110 VISATDILRAKMAK 123 (125)
T ss_dssp EEEHHHHHHHHC--
T ss_pred EEEHHHHHHHHHhc
Confidence 99999999876543
No 28
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=99.61 E-value=6.2e-16 Score=149.38 Aligned_cols=120 Identities=22% Similarity=0.242 Sum_probs=103.1
Q ss_pred ccccceeecccC--CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCC
Q 003885 603 MKNLVASDVVSG--PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTG 680 (789)
Q Consensus 603 l~~l~v~dvM~~--~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~ 680 (789)
++.++|+|+|++ +++++++++++.++++.|.+++++.+||+|++ .++++|+|+.+|++..+.+.
T Consensus 35 l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~----~~~lvGivt~~dl~~~~~~~---------- 100 (156)
T 3oi8_A 35 FSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGED----KDEVLGILHAKDLLKYMFNP---------- 100 (156)
T ss_dssp HTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSS----TTCEEEEEEGGGGGGGSSCG----------
T ss_pred cCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCC----CCcEEEEEEHHHHHHHHHcC----------
Confidence 567899999997 79999999999999999999999999999975 14999999999995543210
Q ss_pred cccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCC
Q 003885 681 SDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGR 760 (789)
Q Consensus 681 ~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~ 760 (789)
....++++|++ +++|++++++.+|+++|.+.+.+++||+|+ +
T Consensus 101 ----------------------------------~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~---~ 142 (156)
T 3oi8_A 101 ----------------------------------EQFHLKSILRP-AVFVPEGKSLTALLKEFREQRNHMAIVIDE---Y 142 (156)
T ss_dssp ----------------------------------GGCCHHHHCBC-CCEEETTSBHHHHHHHHHHTTCCEEEEECT---T
T ss_pred ----------------------------------CcccHHHHcCC-CEEECCCCCHHHHHHHHHhcCCeEEEEECC---C
Confidence 01345677865 889999999999999999999999999998 7
Q ss_pred CCEEEEEecccCcc
Q 003885 761 PPIVGILTRHDFMP 774 (789)
Q Consensus 761 ~~vvGIITr~DLl~ 774 (789)
|+++||||++|+++
T Consensus 143 g~~~Givt~~Dile 156 (156)
T 3oi8_A 143 GGTSGLVTFEDIIE 156 (156)
T ss_dssp SSEEEEEEHHHHCC
T ss_pred CCEEEEEEHHHhcC
Confidence 89999999999874
No 29
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=99.60 E-value=2.5e-15 Score=148.06 Aligned_cols=128 Identities=15% Similarity=0.132 Sum_probs=109.6
Q ss_pred ccccceeecccC--CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCC
Q 003885 603 MKNLVASDVVSG--PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTG 680 (789)
Q Consensus 603 l~~l~v~dvM~~--~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~ 680 (789)
+..++|+|+|++ +++++++++++.++++.|.+++++.+||+|++ .++++|+|+.+||+..+.+..
T Consensus 33 l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~----~~~lvGivt~~Dl~~~~~~~~--------- 99 (173)
T 3ocm_A 33 LAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGS----LDEVVGIGRAKDLVADLITEG--------- 99 (173)
T ss_dssp HTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSS----TTSEEEEEEHHHHHHHHHHHS---------
T ss_pred cCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCC----CCCEEEEEEHHHHHHHHhcCC---------
Confidence 567899999974 78999999999999999999999999999863 269999999999987664310
Q ss_pred cccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCC
Q 003885 681 SDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGR 760 (789)
Q Consensus 681 ~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~ 760 (789)
..+++ |.+++.+|++++++.+++++|.+.+.+++||+|+ +
T Consensus 100 -----------------------------------~~~v~--~~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde---~ 139 (173)
T 3ocm_A 100 -----------------------------------RVRRN--RLRDPIIVHESIGILRLMDTLKRSRGQLVLVADE---F 139 (173)
T ss_dssp -----------------------------------SCCGG--GSBCCCEECGGGCHHHHHHHHHHSTTCCEEEECT---T
T ss_pred -----------------------------------cchhH--hcCCCeEECCCCcHHHHHHHHHHcCCeEEEEEeC---C
Confidence 12344 4467889999999999999999999999999997 7
Q ss_pred CCEEEEEecccCcchhhhccCcc
Q 003885 761 PPIVGILTRHDFMPEHVLGLYPH 783 (789)
Q Consensus 761 ~~vvGIITr~DLl~~~~~~~~~~ 783 (789)
|+++||||++|+++....++...
T Consensus 140 g~lvGiIT~~Dil~~l~~~i~de 162 (173)
T 3ocm_A 140 GAIEGLVTPIDVFEAIAGEFPDE 162 (173)
T ss_dssp CCEEEEECHHHHHHHHHCCCCCT
T ss_pred CCEEEEEeHHHHHHHHhCcCCCc
Confidence 89999999999999988777554
No 30
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.59 E-value=3.4e-15 Score=144.05 Aligned_cols=142 Identities=17% Similarity=0.110 Sum_probs=112.0
Q ss_pred ccccccceeecccCCeEEecCCCcHHHHHHHHhhcCCCe-eEEeeCCCCCCCCeEEEEEehHHHHHHHhcCc--cccccc
Q 003885 601 PYMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNG-FPVIDEPPLTPAPELCGLVLRSHLLVLLKGKK--FTKQKT 677 (789)
Q Consensus 601 ~~l~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~-fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~--~~~~~~ 677 (789)
.....++|+|+|+++++++++++++.++++.|.+++++. +||+|+ ++++|+|+++||+..+.... +...
T Consensus 11 ~~~~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~------~~~vGivt~~dl~~~~~~~~~~~~~~-- 82 (157)
T 1o50_A 11 HHMKVKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD------NKLVGMIPVMHLLKVSGFHFFGFIPK-- 82 (157)
T ss_dssp TTCBHHHHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEET------TEEEEEEEHHHHHHHHHHHHHCCCC---
T ss_pred hhhccccHhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEEC------CEEEEEEEHHHHHHHHhhhHHhhhcc--
Confidence 345678999999999999999999999999999999999 999997 48999999999987654210 0000
Q ss_pred cCCcccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCC
Q 003885 678 MTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKT 757 (789)
Q Consensus 678 ~~~~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~ 757 (789)
...+.+.. .......++++|++ +.++++++++.+|+++|.+.+.+++||+|+
T Consensus 83 -----------~~~~~~~~---------------~~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~- 134 (157)
T 1o50_A 83 -----------EELIRSSM---------------KRLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDE- 134 (157)
T ss_dssp -----------------CC---------------CCCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECT-
T ss_pred -----------HHHHHHHH---------------HHHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcC-
Confidence 00000000 00012456789999 999999999999999999999999999997
Q ss_pred CCCCCEEEEEecccCcchhhhcc
Q 003885 758 PGRPPIVGILTRHDFMPEHVLGL 780 (789)
Q Consensus 758 ~~~~~vvGIITr~DLl~~~~~~~ 780 (789)
+|+++|+||++|+++...+++
T Consensus 135 --~g~~vGiit~~dll~~l~~~~ 155 (157)
T 1o50_A 135 --KGEIVGDLNSLEILLALWKGR 155 (157)
T ss_dssp --TSCEEEEEEHHHHHHHHHHSC
T ss_pred --CCEEEEEEEHHHHHHHHHHhh
Confidence 789999999999998876654
No 31
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=99.59 E-value=3.8e-15 Score=142.89 Aligned_cols=130 Identities=15% Similarity=0.187 Sum_probs=107.8
Q ss_pred ccccccccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCcccccccc
Q 003885 599 AEPYMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTM 678 (789)
Q Consensus 599 ~~~~l~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~ 678 (789)
....+++++++|+ ++++++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+||+..+.+..+..
T Consensus 16 ~~~~l~~~~v~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~-----~~~vGivt~~dl~~~~~~~~~~~---- 84 (152)
T 2uv4_A 16 MSKSLEELQIGTY--ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEK-----GRVVDIYSKFDVINLAAEKTYNN---- 84 (152)
T ss_dssp HTSBHHHHTCSBC--SSCCCEETTCBHHHHHHHHHHHCCSEEEEECTT-----SBEEEEEEHHHHHHHHHCSSCCC----
T ss_pred HHhhHHHccCCcc--CCceEeCCCCcHHHHHHHHHHcCCceEeEECCC-----CcEEEEEeHHHHHHHhcchhhhh----
Confidence 3456788999998 788999999999999999999999999999986 89999999999987765421100
Q ss_pred CCcccccccchhhhccccCCCCCcccccccchhhhhhccccccccc------CCCeeecCCCCHHHHHHHHHHcCCCeEE
Q 003885 679 TGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITN------TSPYTVVETMSLAKAAVLFRQLALRHLC 752 (789)
Q Consensus 679 ~~~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~------~~p~tV~~~~sL~~a~~lf~~~glr~Lp 752 (789)
....+.++|+ +++.++.+++++.+++++|.+.+.+++|
T Consensus 85 ------------------------------------~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lp 128 (152)
T 2uv4_A 85 ------------------------------------LDVSVTKALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLV 128 (152)
T ss_dssp ------------------------------------TTSBGGGGGGTCCHHHHTCSEECTTSBHHHHHHHHHHHTCSEEE
T ss_pred ------------------------------------hcchHHHHHhhhhcccCCCeEECCCCcHHHHHHHHHHcCCeEEE
Confidence 0012344554 7889999999999999999999999999
Q ss_pred EeeCCCCCCCEEEEEecccCcchhhh
Q 003885 753 VVPKTPGRPPIVGILTRHDFMPEHVL 778 (789)
Q Consensus 753 VVd~~~~~~~vvGIITr~DLl~~~~~ 778 (789)
|+|+ +|+++|+||++|+++...+
T Consensus 129 Vvd~---~g~~vGiit~~dil~~l~~ 151 (152)
T 2uv4_A 129 VVDE---NDVVKGIVSLSDILQALVL 151 (152)
T ss_dssp EECT---TSBEEEEEEHHHHHHHHC-
T ss_pred EECC---CCeEEEEEEHHHHHHHHHh
Confidence 9997 7899999999999986543
No 32
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=99.59 E-value=1.2e-15 Score=142.56 Aligned_cols=126 Identities=15% Similarity=0.202 Sum_probs=104.6
Q ss_pred ccccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHH-HHhcCccccccccCCc
Q 003885 603 MKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV-LLKGKKFTKQKTMTGS 681 (789)
Q Consensus 603 l~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~-lL~~~~~~~~~~~~~~ 681 (789)
++.++++|+|.+++.++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+|++. .+.+...
T Consensus 5 ~~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----~~~~Givt~~dl~~~~~~~~~~--------- 70 (133)
T 1y5h_A 5 FTMTTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDD-----DRLHGMLTDRDIVIKGLAAGLD--------- 70 (133)
T ss_dssp ---CCHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGG-----GBEEEEEEHHHHHHTTGGGTCC---------
T ss_pred hhhcCHHHHhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECCC-----CeEEEEEeHHHHHHHHHhcCCC---------
Confidence 45579999999999999999999999999999999999999876 89999999999973 3322100
Q ss_pred ccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCC
Q 003885 682 DIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRP 761 (789)
Q Consensus 682 ~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~ 761 (789)
.....++++|++++.++++++++.+++++|.+.+.+++||+|+ |
T Consensus 71 --------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~----g 114 (133)
T 1y5h_A 71 --------------------------------PNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISE----H 114 (133)
T ss_dssp --------------------------------TTTSBHHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET----T
T ss_pred --------------------------------ccccCHHHHhcCCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC----C
Confidence 0013456788889999999999999999999999999999994 6
Q ss_pred CEEEEEecccCcchhhh
Q 003885 762 PIVGILTRHDFMPEHVL 778 (789)
Q Consensus 762 ~vvGIITr~DLl~~~~~ 778 (789)
+++|+||++|+++...+
T Consensus 115 ~~~Giit~~dil~~l~~ 131 (133)
T 1y5h_A 115 RLVGIVTEADIARHLPE 131 (133)
T ss_dssp EEEEEEEHHHHHHTCC-
T ss_pred EEEEEEEHHHHHHHHHh
Confidence 89999999999986543
No 33
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=99.58 E-value=2.2e-15 Score=146.10 Aligned_cols=133 Identities=18% Similarity=0.275 Sum_probs=109.2
Q ss_pred cccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCccc
Q 003885 604 KNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDI 683 (789)
Q Consensus 604 ~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~ 683 (789)
..++|+|+|+++++++++++++.++++.|.+++++.+||+|++ ++++|+|+++||+..+........
T Consensus 3 ~~~~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-----~~lvGivt~~dl~~~~~~~~~~~~-------- 69 (160)
T 2o16_A 3 LMIKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDAN-----KKLLGIVSQRDLLAAQESSLQRSA-------- 69 (160)
T ss_dssp CCCBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-----CBEEEEEEHHHHHHHHHHHCC-----------
T ss_pred CcCcHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----CcEEEEEeHHHHHHHHHHhhcccc--------
Confidence 4678999999999999999999999999999999999999976 899999999999877653110000
Q ss_pred ccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCE
Q 003885 684 MRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPI 763 (789)
Q Consensus 684 ~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~v 763 (789)
+ ..+......+.++|++++.+|.+++++.+|+++|.+.+.+++||+| +|++
T Consensus 70 ----------~---------------~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd----~g~l 120 (160)
T 2o16_A 70 ----------Q---------------GDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA----KDVL 120 (160)
T ss_dssp -------------------------------CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE----TTEE
T ss_pred ----------c---------------ccchhcccCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEE----CCEE
Confidence 0 0000112456788999999999999999999999999999999998 3789
Q ss_pred EEEEecccCcchhhh
Q 003885 764 VGILTRHDFMPEHVL 778 (789)
Q Consensus 764 vGIITr~DLl~~~~~ 778 (789)
+|+||++|+++...+
T Consensus 121 vGiit~~dil~~~~~ 135 (160)
T 2o16_A 121 VGIITDSDFVTIAIN 135 (160)
T ss_dssp EEEECHHHHHHHHHH
T ss_pred EEEEEHHHHHHHHHH
Confidence 999999999986554
No 34
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=99.58 E-value=3e-15 Score=151.61 Aligned_cols=126 Identities=13% Similarity=0.100 Sum_probs=108.3
Q ss_pred ccccceeecccCCeEEecCCCcHHHHHHHHhhc---CCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccC
Q 003885 603 MKNLVASDVVSGPLITFSGVEKVGNIMHALRLT---RHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMT 679 (789)
Q Consensus 603 l~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~---~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~ 679 (789)
....+|+++|++++++++++++++++++.|++. +++.+||+|++ ++++|+|+.+||+. ..
T Consensus 51 ~~~~~v~~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~-----~~lvGivt~~dll~---~~--------- 113 (205)
T 3kxr_A 51 YSENEIGRYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEA-----DKYLGTVRRYDIFK---HE--------- 113 (205)
T ss_dssp SCTTCGGGGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTT-----CBEEEEEEHHHHTT---SC---------
T ss_pred CCcchHHhhccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCC-----CeEEEEEEHHHHHh---CC---------
Confidence 346789999999999999999999999999986 77899999987 89999999999842 10
Q ss_pred CcccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCC
Q 003885 680 GSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPG 759 (789)
Q Consensus 680 ~~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~ 759 (789)
....++++|++++++|++++++.+++++|++++++++||||+
T Consensus 114 -----------------------------------~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~--- 155 (205)
T 3kxr_A 114 -----------------------------------PHEPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVIDD--- 155 (205)
T ss_dssp -----------------------------------TTSBGGGGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECT---
T ss_pred -----------------------------------CcchHHHHhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcC---
Confidence 013467899999999999999999999999999999999998
Q ss_pred CCCEEEEEecccCcchhhhccCcc
Q 003885 760 RPPIVGILTRHDFMPEHVLGLYPH 783 (789)
Q Consensus 760 ~~~vvGIITr~DLl~~~~~~~~~~ 783 (789)
+|+++|+||++|+++...++....
T Consensus 156 ~g~lvGiIT~~Dil~~i~~e~~ed 179 (205)
T 3kxr_A 156 AGELIGRVTLRAATALVREHYEAQ 179 (205)
T ss_dssp TSBEEEEEEHHHHHHHHHHHHC--
T ss_pred CCeEEEEEEHHHHHHHHHHHHHHH
Confidence 899999999999998776655443
No 35
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=99.58 E-value=1.6e-15 Score=149.13 Aligned_cols=153 Identities=21% Similarity=0.230 Sum_probs=109.2
Q ss_pred ccceeecccC--CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcc
Q 003885 605 NLVASDVVSG--PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSD 682 (789)
Q Consensus 605 ~l~v~dvM~~--~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~ 682 (789)
.++|+|+|++ +++++++++++.++++.|.+++++.+||+|++ ++++|+|+++||+.++.... .+.
T Consensus 3 ~~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~-----~~~~Givt~~dl~~~~~~~~---~~~----- 69 (180)
T 3sl7_A 3 GYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDN-----WTLVGVVSDYDLLALDSISG---RSQ----- 69 (180)
T ss_dssp CCBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-----CBEEEEEEHHHHTCC----------------
T ss_pred ceeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCC-----CeEEEEEEHHHHHhhhhhcc---ccC-----
Confidence 4789999998 89999999999999999999999999999987 89999999999964321100 000
Q ss_pred cccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCC
Q 003885 683 IMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPP 762 (789)
Q Consensus 683 ~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~ 762 (789)
....+..........+.+..-. -.......++++|++++++|++++++.+|+++|.+.+.+++||+|+ +|+
T Consensus 70 -----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~ 140 (180)
T 3sl7_A 70 -----NDTNLFPDVDSTWKTFNELQKL-ISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDA---DGK 140 (180)
T ss_dssp ----------------CCCSHHHHHHH-HHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECT---TCB
T ss_pred -----CcccccccccchhhhhHHHHHH-HhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECC---CCe
Confidence 0000000000000000000000 0001234578899999999999999999999999999999999997 789
Q ss_pred EEEEEecccCcchhhhc
Q 003885 763 IVGILTRHDFMPEHVLG 779 (789)
Q Consensus 763 vvGIITr~DLl~~~~~~ 779 (789)
++|+||++|+++...+.
T Consensus 141 ~vGiit~~dil~~~~~~ 157 (180)
T 3sl7_A 141 LIGILTRGNVVRAALQI 157 (180)
T ss_dssp EEEEEEHHHHHHHHHHH
T ss_pred EEEEEEHHHHHHHHHHH
Confidence 99999999999876643
No 36
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=99.58 E-value=4.9e-15 Score=140.00 Aligned_cols=128 Identities=20% Similarity=0.263 Sum_probs=104.5
Q ss_pred ccccceee---cccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccC
Q 003885 603 MKNLVASD---VVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMT 679 (789)
Q Consensus 603 l~~l~v~d---vM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~ 679 (789)
+-+.+++| +|.++++++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|++..+.+..+..
T Consensus 5 ~~~~~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----~~~~Givt~~dl~~~~~~~~~~~----- 74 (144)
T 2nyc_A 5 FLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN-----GYLINVYEAYDVLGLIKGGIYND----- 74 (144)
T ss_dssp GGGSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-----CBEEEEEEHHHHHHHHHTC---------
T ss_pred hhhcchhhcCCCCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCC-----CcEEEEEcHHHHHHHhccccccc-----
Confidence 34566777 888999999999999999999999999999999976 89999999999987764311000
Q ss_pred CcccccccchhhhccccCCCCCcccccccchhhhhhcccccccccC------CCeeecCCCCHHHHHHHHHHcCCCeEEE
Q 003885 680 GSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNT------SPYTVVETMSLAKAAVLFRQLALRHLCV 753 (789)
Q Consensus 680 ~~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~------~p~tV~~~~sL~~a~~lf~~~glr~LpV 753 (789)
....++++|++ ++.++.+++++.+++++|.+.+.+++||
T Consensus 75 -----------------------------------~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V 119 (144)
T 2nyc_A 75 -----------------------------------LSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFV 119 (144)
T ss_dssp -----------------------------------CCSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEE
T ss_pred -----------------------------------CCccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEE
Confidence 01234556654 5789999999999999999999999999
Q ss_pred eeCCCCCCCEEEEEecccCcchhhh
Q 003885 754 VPKTPGRPPIVGILTRHDFMPEHVL 778 (789)
Q Consensus 754 Vd~~~~~~~vvGIITr~DLl~~~~~ 778 (789)
+|+ +|+++|+||++|+++...+
T Consensus 120 vd~---~g~~~Giit~~dil~~l~~ 141 (144)
T 2nyc_A 120 VDD---VGRLVGVLTLSDILKYILL 141 (144)
T ss_dssp ECT---TSBEEEEEEHHHHHHHHHH
T ss_pred ECC---CCCEEEEEEHHHHHHHHHh
Confidence 997 7899999999999987654
No 37
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=99.58 E-value=5.9e-15 Score=138.34 Aligned_cols=124 Identities=13% Similarity=0.148 Sum_probs=104.9
Q ss_pred cceeeccc---CCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcc
Q 003885 606 LVASDVVS---GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSD 682 (789)
Q Consensus 606 l~v~dvM~---~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~ 682 (789)
++++|+|+ ++++++++++++.++++.|.+++++.+||+| + ++++|+|+.+|++..+......
T Consensus 6 ~~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-----~~~~Givt~~dl~~~~~~~~~~--------- 70 (135)
T 2rc3_A 6 KTVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-D-----EKLVGILTERDFSRKSYLLDKP--------- 70 (135)
T ss_dssp CBHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-T-----TEEEEEEEHHHHHHHGGGSSSC---------
T ss_pred eeHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-C-----CEEEEEEehHHHHHHHHHcCCC---------
Confidence 38999999 8999999999999999999999999999999 5 8999999999997533211000
Q ss_pred cccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCC
Q 003885 683 IMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPP 762 (789)
Q Consensus 683 ~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~ 762 (789)
.....+.++|++++.++.+++++.+++++|.+.+.+++||+| +|+
T Consensus 71 -------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd----~g~ 115 (135)
T 2rc3_A 71 -------------------------------VKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD----DGK 115 (135)
T ss_dssp -------------------------------GGGSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE----TTE
T ss_pred -------------------------------cccCCHHHhccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe----CCE
Confidence 012346778999999999999999999999999999999998 478
Q ss_pred EEEEEecccCcchhhhc
Q 003885 763 IVGILTRHDFMPEHVLG 779 (789)
Q Consensus 763 vvGIITr~DLl~~~~~~ 779 (789)
++|+||++|+++...++
T Consensus 116 ~~Giit~~dll~~~~~~ 132 (135)
T 2rc3_A 116 VIGLLSIGDLVKDAISQ 132 (135)
T ss_dssp EEEEEEHHHHHHHHHC-
T ss_pred EEEEEEHHHHHHHHHhc
Confidence 99999999999876543
No 38
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=99.58 E-value=7.7e-15 Score=145.60 Aligned_cols=125 Identities=14% Similarity=0.126 Sum_probs=108.8
Q ss_pred cceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCccccc
Q 003885 606 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMR 685 (789)
Q Consensus 606 l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~ 685 (789)
++++|+|+++++++++++++.++++.|.+++++.+||+|++ ++++|+|+.+||+..+.....
T Consensus 9 ~~v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~-----g~~vGivt~~dl~~~~~~~~~------------- 70 (184)
T 1pvm_A 9 MRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN-----GNDVGLLSERSIIKRFIPRNK------------- 70 (184)
T ss_dssp CBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTT-----SCEEEEEEHHHHHHHTGGGCC-------------
T ss_pred cCHHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----CcEEEEEeHHHHHHHHhhccc-------------
Confidence 79999999999999999999999999999999999999976 899999999999876542100
Q ss_pred ccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEE
Q 003885 686 RFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVG 765 (789)
Q Consensus 686 ~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvG 765 (789)
......++++|++++.++.+++++.+|+++|.+.+.+++||+|+ +|+++|
T Consensus 71 ---------------------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~~~G 120 (184)
T 1pvm_A 71 ---------------------------KPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDD---PGRVVG 120 (184)
T ss_dssp ---------------------------CGGGSBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECT---TCCEEE
T ss_pred ---------------------------CcccCCHHHHhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEcC---CCeEEE
Confidence 00123567889999999999999999999999999999999997 789999
Q ss_pred EEecccCcchhhh
Q 003885 766 ILTRHDFMPEHVL 778 (789)
Q Consensus 766 IITr~DLl~~~~~ 778 (789)
+||++|+++....
T Consensus 121 ivt~~dll~~~~~ 133 (184)
T 1pvm_A 121 IVTLTDLSRYLSR 133 (184)
T ss_dssp EEEHHHHTTTSCH
T ss_pred EEEHHHHHHHHHh
Confidence 9999999986655
No 39
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=99.57 E-value=7.3e-15 Score=141.30 Aligned_cols=135 Identities=17% Similarity=0.174 Sum_probs=110.3
Q ss_pred cccccceeecccC--CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccC
Q 003885 602 YMKNLVASDVVSG--PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMT 679 (789)
Q Consensus 602 ~l~~l~v~dvM~~--~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~ 679 (789)
.+..++++|+|.+ +++++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|++..+.+....
T Consensus 7 ~l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~-----~~~~Givt~~dl~~~~~~~~~~------ 75 (157)
T 2emq_A 7 EFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTS-----YKLHGLISMTMMMDAILGLERI------ 75 (157)
T ss_dssp ---CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTT-----CCEEEEEEHHHHHHHSBCSSSB------
T ss_pred hHhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCC-----CCEEEEeeHHHHHHHHhccccc------
Confidence 3567899999997 89999999999999999999999999999976 8999999999998765431000
Q ss_pred CcccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCC
Q 003885 680 GSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPG 759 (789)
Q Consensus 680 ~~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~ 759 (789)
.. +......+.++|++++.++++++++.+++++|.+.+. +||+|+
T Consensus 76 --------~~----------------------~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~--- 120 (157)
T 2emq_A 76 --------EF----------------------ERLETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVEND--- 120 (157)
T ss_dssp --------CG----------------------GGGGTCBGGGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECS---
T ss_pred --------ch----------------------HHhcCCcHHHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcC---
Confidence 00 0011245678999999999999999999999999987 999997
Q ss_pred CCCEEEEEecccCcchhhhccCc
Q 003885 760 RPPIVGILTRHDFMPEHVLGLYP 782 (789)
Q Consensus 760 ~~~vvGIITr~DLl~~~~~~~~~ 782 (789)
+|+++|+||++|+++.......+
T Consensus 121 ~g~~~Giit~~dil~~~~~~~~~ 143 (157)
T 2emq_A 121 DGYFAGIFTRREVLKQLNKQLHR 143 (157)
T ss_dssp SSSEEEEEEHHHHHHHHHHTTCC
T ss_pred CCeEEEEEEHHHHHHHHHHHhhc
Confidence 78999999999999987766543
No 40
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=99.57 E-value=5.2e-15 Score=142.39 Aligned_cols=133 Identities=14% Similarity=0.133 Sum_probs=110.0
Q ss_pred ccccceeeccc--CCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCC
Q 003885 603 MKNLVASDVVS--GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTG 680 (789)
Q Consensus 603 l~~l~v~dvM~--~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~ 680 (789)
+...+++|+|+ ++++++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+|++..+.......
T Consensus 12 l~~~~v~dim~p~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~-----~~~~Giit~~dl~~~~~~~~~~~------ 80 (156)
T 3ctu_A 12 FLLGQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDE-----KQFVGTIGLRDIMAYQMEHDLSQ------ 80 (156)
T ss_dssp HHHTTGGGGEEEGGGCCCEETTSBHHHHHHHHTTCSSSEEEEECC------CBEEEEEEHHHHHHHHHHHTCCH------
T ss_pred HHHHHHHHHcCcccCceEECCCCCHHHHHHHHHHCCCceEeEECCC-----CEEEEEEcHHHHHHHHHhccccc------
Confidence 44567899999 689999999999999999999999999999976 89999999999988765411100
Q ss_pred cccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCC
Q 003885 681 SDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGR 760 (789)
Q Consensus 681 ~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~ 760 (789)
+......++++|++++.++.+++++.+|+++|.+.+ ++||||+ +
T Consensus 81 -------------------------------~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~--~lpVvd~---~ 124 (156)
T 3ctu_A 81 -------------------------------EIMADTDIVHMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVDA---E 124 (156)
T ss_dssp -------------------------------HHHTTSBGGGGCBCSCCCBCSSCCHHHHHHHTTTSS--EEEEECT---T
T ss_pred -------------------------------cccccCcHHHhccCCceeeCCCCcHHHHHHHHHHcC--eEEEEcC---C
Confidence 000124567899999999999999999999999886 7999997 7
Q ss_pred CCEEEEEecccCcchhhhccCc
Q 003885 761 PPIVGILTRHDFMPEHVLGLYP 782 (789)
Q Consensus 761 ~~vvGIITr~DLl~~~~~~~~~ 782 (789)
|+++|+||++|+++...+.+..
T Consensus 125 g~~~Giit~~dil~~l~~~~~~ 146 (156)
T 3ctu_A 125 GIFQGIITRKSILKAVNALLHD 146 (156)
T ss_dssp SBEEEEEETTHHHHHHHHHSCC
T ss_pred CeEEEEEEHHHHHHHHHHHHHh
Confidence 8999999999999987765544
No 41
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=99.56 E-value=8e-15 Score=141.85 Aligned_cols=135 Identities=17% Similarity=0.240 Sum_probs=106.9
Q ss_pred ccccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcc
Q 003885 603 MKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSD 682 (789)
Q Consensus 603 l~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~ 682 (789)
...++|+|+|+++++++++++++.++.+.|.+++++.+||+|++ ++++++|+|+++||+..+.........
T Consensus 10 ~~~~~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~---~~~~~~Givt~~dl~~~~~~~~~~~~~------ 80 (164)
T 2pfi_A 10 SHHVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVEST---ESQILVGIVQRAQLVQALQAEPPSRAP------ 80 (164)
T ss_dssp CCSCBHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCT---TTCBEEEEEEHHHHHHHHHC-------------
T ss_pred ccCCCHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecC---CCCEEEEEEEHHHHHHHHHhhccccCC------
Confidence 45789999999999999999999999999999999999999961 128999999999998876532100000
Q ss_pred cccccchhhhccccCCCCCcccccccchhhhhhcccccccccCC------CeeecCCCCHHHHHHHHHHcCCCeEEEeeC
Q 003885 683 IMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTS------PYTVVETMSLAKAAVLFRQLALRHLCVVPK 756 (789)
Q Consensus 683 ~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~------p~tV~~~~sL~~a~~lf~~~glr~LpVVd~ 756 (789)
.. ...+.++|+++ +.++.+++++.+++++|.+.+.+++||+|
T Consensus 81 -~~------------------------------~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd- 128 (164)
T 2pfi_A 81 -GH------------------------------QQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS- 128 (164)
T ss_dssp -CC------------------------------CCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-
T ss_pred -cc------------------------------cchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-
Confidence 00 01233344444 78999999999999999999999999999
Q ss_pred CCCCCCEEEEEecccCcchhhhccC
Q 003885 757 TPGRPPIVGILTRHDFMPEHVLGLY 781 (789)
Q Consensus 757 ~~~~~~vvGIITr~DLl~~~~~~~~ 781 (789)
+|+++|+||++|+++...+...
T Consensus 129 ---~g~l~Giit~~dil~~~~~~~~ 150 (164)
T 2pfi_A 129 ---RGRAVGCVSWVEMKKAISNLTN 150 (164)
T ss_dssp ---TTEEEEEEEHHHHHHHHHHHHS
T ss_pred ---CCEEEEEEEHHHHHHHHHhhhC
Confidence 4789999999999988776543
No 42
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=99.56 E-value=8.1e-15 Score=144.85 Aligned_cols=156 Identities=23% Similarity=0.366 Sum_probs=113.6
Q ss_pred ccccccceeecccCC----eEEe--cCCCcHHHHHHHHhhcCCCeeEEe--eCCCCCCCCeEEEEEehHHHHHHHhcCcc
Q 003885 601 PYMKNLVASDVVSGP----LITF--SGVEKVGNIMHALRLTRHNGFPVI--DEPPLTPAPELCGLVLRSHLLVLLKGKKF 672 (789)
Q Consensus 601 ~~l~~l~v~dvM~~~----vvtv--~~~~~V~~~~~~L~~~~~~~fPVV--d~~~~~~~~~l~GlI~r~dLl~lL~~~~~ 672 (789)
..++..+|+|+|+++ ++++ ++++++.++++.|.+++++.+||+ |++ ++++|+|+++|++..+.....
T Consensus 6 ~~~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~-----~~lvGiit~~dl~~~~~~~~~ 80 (185)
T 2j9l_A 6 EFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRES-----QRLVGFVLRRDLIISIENARK 80 (185)
T ss_dssp ---CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTT-----CBEEEEEEHHHHHHHHHHHHT
T ss_pred hhhccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCC-----CeEEEEEEHHHHHHHHHhhcc
Confidence 457789999999987 7888 999999999999999999999999 555 899999999999887654210
Q ss_pred ccccccCCcccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEE
Q 003885 673 TKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLC 752 (789)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~Lp 752 (789)
..... .+. . ...+.+... +. ........+++++|++++.+|.+++++.+|+++|.+.+.+++|
T Consensus 81 ~~~~~-~~~-~-----~~~~~~~~~-------~~---~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~ 143 (185)
T 2j9l_A 81 KQDGV-VST-S-----IIYFTEHSP-------PL---PPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCL 143 (185)
T ss_dssp SCSCC-CTT-C-----EEECSSSCC-------CC---CTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEE
T ss_pred cCCCc-ccc-c-----eeecccCCc-------cc---ccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEE
Confidence 00000 000 0 000000000 00 0001123567889999999999999999999999999999999
Q ss_pred EeeCCCCCCCEEEEEecccCcchhhhccCc
Q 003885 753 VVPKTPGRPPIVGILTRHDFMPEHVLGLYP 782 (789)
Q Consensus 753 VVd~~~~~~~vvGIITr~DLl~~~~~~~~~ 782 (789)
|+| +|+++|+||++|+++...+....
T Consensus 144 Vvd----~g~~vGiit~~dll~~l~~~~~~ 169 (185)
T 2j9l_A 144 VTH----NGRLLGIITKKDVLKHIAQMANQ 169 (185)
T ss_dssp EEE----TTEEEEEEEHHHHHHHHHHHCC-
T ss_pred EEE----CCEEEEEEEHHHHHHHHHHhhcc
Confidence 998 57899999999999987765443
No 43
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=99.55 E-value=1.2e-14 Score=150.97 Aligned_cols=165 Identities=12% Similarity=0.115 Sum_probs=109.4
Q ss_pred ccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccc----cc---
Q 003885 605 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQ----KT--- 677 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~----~~--- 677 (789)
..+++|+|+++++++++++++.++++.|.+++++.+||+|++ ++++|+|+..|++..+....-... ..
T Consensus 6 ~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~-----~~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~ 80 (245)
T 3l2b_A 6 KLKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGN-----NHLLGMLSTSNITATYMDIWDSNILAKSATSLD 80 (245)
T ss_dssp CCBGGGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTT-----CBEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHH
T ss_pred cCcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----CEEEEEEEHHHHHHHHHHhhhhhhhhhccCCHH
Confidence 468999999999999999999999999999999999999987 899999999999988754210000 00
Q ss_pred ----------c-CCcc---c-----ccccchhhhccccCCCC---------------------------Cccc-------
Q 003885 678 ----------M-TGSD---I-----MRRFKAHDFAKAGSGKG---------------------------VKLE------- 704 (789)
Q Consensus 678 ----------~-~~~~---~-----~~~~~~~d~~~~~~~~~---------------------------~~i~------- 704 (789)
. .... . ........+.+...... ..+.
T Consensus 81 ~v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgdr~~~~~~~i~~~~~~liit~~~~~~~~v~~~a 160 (245)
T 3l2b_A 81 NILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEIIELA 160 (245)
T ss_dssp HHHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECSCHHHHHHHHHTTCSEEEECTTCCCCHHHHHHH
T ss_pred HHHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHH
Confidence 0 0000 0 00000111111000000 0000
Q ss_pred ------------ccccchhhhhhccccccccc-CCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEeccc
Q 003885 705 ------------DLDIKEEEMEMFVDLHPITN-TSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHD 771 (789)
Q Consensus 705 ------------di~l~~~~~~~~~dL~~im~-~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~D 771 (789)
|..-..........++++|+ +++.++++++++.+++++|.+.+++++||+|+ +|+++|+||++|
T Consensus 161 ~~~~~~~i~t~~d~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~---~~~~~Giit~~d 237 (245)
T 3l2b_A 161 KKNNITVITTPHDSFTASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDE---NNKVVGSIARFH 237 (245)
T ss_dssp HHHTCEEEECSSCHHHHHHHGGGGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECT---TCBEEEEEECC-
T ss_pred HHcCCeEEEeCCChHHHHHHHhcCCceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcC---CCeEEEEEEHHH
Confidence 00000111233567899999 89999999999999999999999999999998 789999999999
Q ss_pred Ccchhh
Q 003885 772 FMPEHV 777 (789)
Q Consensus 772 Ll~~~~ 777 (789)
+++...
T Consensus 238 ll~~~~ 243 (245)
T 3l2b_A 238 LISTHK 243 (245)
T ss_dssp ------
T ss_pred hhchhh
Confidence 998654
No 44
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=99.54 E-value=5.4e-15 Score=142.85 Aligned_cols=134 Identities=15% Similarity=0.159 Sum_probs=110.7
Q ss_pred ccccceeecccC--CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCC
Q 003885 603 MKNLVASDVVSG--PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTG 680 (789)
Q Consensus 603 l~~l~v~dvM~~--~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~ 680 (789)
+..++++|+|.+ +++++++++++.++++.|.+++++.+||+|++ ++++|+|+.+||+..+.+...
T Consensus 11 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~-----~~lvGivt~~dl~~~~~~~~~-------- 77 (159)
T 1yav_A 11 LLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS-----YRLHGLIGTNMIMNSIFGLER-------- 77 (159)
T ss_dssp CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTT-----CBEEEEEEHHHHHHHHBCSSS--------
T ss_pred HhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCC-----CCEEEEeEHHHHHHHhhhhcc--------
Confidence 556899999998 89999999999999999999999999999986 899999999999877643110
Q ss_pred cccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCC
Q 003885 681 SDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGR 760 (789)
Q Consensus 681 ~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~ 760 (789)
+ +. +......+.++|++++.++.+++++.+++++|.+.+. +||+|+ +
T Consensus 78 ------~---~~-------------------~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~---~ 124 (159)
T 1yav_A 78 ------I---EF-------------------EKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVEND---E 124 (159)
T ss_dssp ------B---CG-------------------GGTTTSBHHHHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECT---T
T ss_pred ------c---ch-------------------hhhccCCHHHhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeC---C
Confidence 0 00 0001245678899999999999999999999999876 999997 7
Q ss_pred CCEEEEEecccCcchhhhccCc
Q 003885 761 PPIVGILTRHDFMPEHVLGLYP 782 (789)
Q Consensus 761 ~~vvGIITr~DLl~~~~~~~~~ 782 (789)
|+++|+||++|+++...+++..
T Consensus 125 g~~vGiit~~dil~~~~~~~~~ 146 (159)
T 1yav_A 125 QVFEGIFTRRVVLKELNKHIRS 146 (159)
T ss_dssp CBEEEEEEHHHHHHHHHHHC--
T ss_pred CeEEEEEEHHHHHHHHHHHHHh
Confidence 8999999999999987766544
No 45
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=99.54 E-value=1.3e-14 Score=139.80 Aligned_cols=127 Identities=13% Similarity=0.165 Sum_probs=107.2
Q ss_pred cceeeccc------CCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccC
Q 003885 606 LVASDVVS------GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMT 679 (789)
Q Consensus 606 l~v~dvM~------~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~ 679 (789)
.+|+|+|+ ++++++++++++.++++.|.+++++.+||+| + ++++|+|+.+|++..+......
T Consensus 7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~-----~~~~Givt~~dl~~~~~~~~~~------ 74 (157)
T 4fry_A 7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-G-----DDIAGIVTERDYARKVVLQERS------ 74 (157)
T ss_dssp CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES-S-----SSEEEEEEHHHHHHHSGGGTCC------
T ss_pred HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee-C-----CEEEEEEEHHHHHHHHHhccCC------
Confidence 57999998 5679999999999999999999999999965 4 8999999999998765431100
Q ss_pred CcccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCC
Q 003885 680 GSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPG 759 (789)
Q Consensus 680 ~~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~ 759 (789)
.....++++|++++.++.+++++.+++++|.+.+.+++||+|
T Consensus 75 ----------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd---- 116 (157)
T 4fry_A 75 ----------------------------------SKATRVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD---- 116 (157)
T ss_dssp ----------------------------------SSSCBHHHHSBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE----
T ss_pred ----------------------------------ccccCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE----
Confidence 002345778889999999999999999999999999999998
Q ss_pred CCCEEEEEecccCcchhhhccCc
Q 003885 760 RPPIVGILTRHDFMPEHVLGLYP 782 (789)
Q Consensus 760 ~~~vvGIITr~DLl~~~~~~~~~ 782 (789)
+|+++|+||++|+++....+...
T Consensus 117 ~g~~~Giit~~dil~~l~~~~~~ 139 (157)
T 4fry_A 117 GGKLIGLISIGDLVKSVIADQQF 139 (157)
T ss_dssp TTEEEEEEEHHHHHHHHHTTCCC
T ss_pred CCEEEEEEEHHHHHHHHHHHHHh
Confidence 47899999999999988766544
No 46
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=99.50 E-value=3.1e-14 Score=164.53 Aligned_cols=154 Identities=14% Similarity=0.137 Sum_probs=124.4
Q ss_pred CchhHHHHHHHcCCCcccccccccccccceeecccCCeEEecCC-CcHHHHHHHHhhcCCCeeEEee-CCCCCCCCeEEE
Q 003885 579 NQGVYDQIVKLKGLPYLEAHAEPYMKNLVASDVVSGPLITFSGV-EKVGNIMHALRLTRHNGFPVID-EPPLTPAPELCG 656 (789)
Q Consensus 579 ~~~iy~~~l~~kg~p~l~~~~~~~l~~l~v~dvM~~~vvtv~~~-~~V~~~~~~L~~~~~~~fPVVd-~~~~~~~~~l~G 656 (789)
..-.++.++..+++.......+..+.+.+|+|+|++++++++++ +++.++++.|.+++++.+||+| ++ ++++|
T Consensus 357 s~~~~~~~l~~rg~~~~~~~~~~~l~~~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~-----g~lvG 431 (527)
T 3pc3_A 357 TKFVSDNWMEARNFKEPVNEHGHWWWSLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDD-----GSVLG 431 (527)
T ss_dssp TTTTSHHHHHHTTSSCCCCTTCCTTTTSBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTT-----CCEEE
T ss_pred hhhhcHHHHHhcCCccccccccccccCCcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCC-----CEEEE
Confidence 44455677788887654444455688999999999999999999 9999999999999999999999 55 89999
Q ss_pred EEehHHHHHHHhcCccccccccCCcccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCH
Q 003885 657 LVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSL 736 (789)
Q Consensus 657 lI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL 736 (789)
+|+++||+..+.+... .....++++|++++.+|++++++
T Consensus 432 iVt~~Dll~~l~~~~~-----------------------------------------~~~~~V~~im~~~~~~v~~~~~l 470 (527)
T 3pc3_A 432 VVGQETLITQIVSMNR-----------------------------------------QQSDPAIKALNKRVIRLNESEIL 470 (527)
T ss_dssp EEEHHHHHHHHHHHCC-----------------------------------------CTTSBGGGGEETTCCEEETTSBH
T ss_pred EEEHHHHHHHHHhccC-----------------------------------------cCCCcHHHHhcCCCeEECCCCcH
Confidence 9999999877653110 01235678999999999999999
Q ss_pred HHHHHHHHHcCCCeEEEeeCC-CCCCCEEEEEecccCcchhhhcc
Q 003885 737 AKAAVLFRQLALRHLCVVPKT-PGRPPIVGILTRHDFMPEHVLGL 780 (789)
Q Consensus 737 ~~a~~lf~~~glr~LpVVd~~-~~~~~vvGIITr~DLl~~~~~~~ 780 (789)
.+++++|.+.+. +||||++ .++++++||||++||++...++.
T Consensus 471 ~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~~ 513 (527)
T 3pc3_A 471 GKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAGK 513 (527)
T ss_dssp HHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTCC
T ss_pred HHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHhcc
Confidence 999999987765 7999861 11289999999999999877654
No 47
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.50 E-value=3.3e-14 Score=144.70 Aligned_cols=118 Identities=20% Similarity=0.212 Sum_probs=104.6
Q ss_pred cceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCccccc
Q 003885 606 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMR 685 (789)
Q Consensus 606 l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~ 685 (789)
.+++++|.++++++++++++.++.+.|.+++++++||+|++ ++++|+|+.+|+...+.
T Consensus 13 ~~~~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~-----~~l~Givt~~dl~~~~~----------------- 70 (213)
T 1vr9_A 13 MKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDRE-----GHFRGVVNKEDLLDLDL----------------- 70 (213)
T ss_dssp CBGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTT-----SBEEEEEEGGGGTTSCT-----------------
T ss_pred cCHHHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCC-----CEEEEEEEHHHHHhhcC-----------------
Confidence 57889999999999999999999999999999999999976 89999999999843210
Q ss_pred ccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEE
Q 003885 686 RFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVG 765 (789)
Q Consensus 686 ~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvG 765 (789)
...++++|++++.++.+++++.+|+++|.+.+.+++||+|+ +|+++|
T Consensus 71 ------------------------------~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvG 117 (213)
T 1vr9_A 71 ------------------------------DSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDE---EMRLKG 117 (213)
T ss_dssp ------------------------------TSBSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECT---TCBEEE
T ss_pred ------------------------------CCcHHHHccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcC---CCEEEE
Confidence 02357789999999999999999999999999999999997 789999
Q ss_pred EEecccCcchhhh
Q 003885 766 ILTRHDFMPEHVL 778 (789)
Q Consensus 766 IITr~DLl~~~~~ 778 (789)
+||++|+++....
T Consensus 118 iit~~Dil~~~~~ 130 (213)
T 1vr9_A 118 AVSLHDFLEALIE 130 (213)
T ss_dssp EEEHHHHHHHHHH
T ss_pred EEEHHHHHHHHHH
Confidence 9999999986654
No 48
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=99.48 E-value=3e-14 Score=151.83 Aligned_cols=122 Identities=16% Similarity=0.119 Sum_probs=107.1
Q ss_pred cccceeecccCCeEEecCCCcHHHHHHHHhhc-----CCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCcccccccc
Q 003885 604 KNLVASDVVSGPLITFSGVEKVGNIMHALRLT-----RHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTM 678 (789)
Q Consensus 604 ~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~-----~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~ 678 (789)
...+|+++|+++++++++++++.++++.|+++ +++.+||+|++ ++++|+|+.+|++...
T Consensus 135 ~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~-----~~lvGivt~~dll~~~----------- 198 (286)
T 2oux_A 135 EDETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQE-----NHLVGVISLRDLIVND----------- 198 (286)
T ss_dssp CTTBHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTT-----CBEEEEEEHHHHTTSC-----------
T ss_pred ChHHHHHhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCC-----CeEEEEEEHHHHHcCC-----------
Confidence 46789999999999999999999999999987 78889999986 8999999999994310
Q ss_pred CCcccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCC
Q 003885 679 TGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTP 758 (789)
Q Consensus 679 ~~~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~ 758 (789)
....++++|++++.+|++++++.+++++|.+.+++++||||+
T Consensus 199 ------------------------------------~~~~v~~im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~-- 240 (286)
T 2oux_A 199 ------------------------------------DDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDY-- 240 (286)
T ss_dssp ------------------------------------TTSBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECT--
T ss_pred ------------------------------------CCCcHHHHcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcC--
Confidence 013456789999999999999999999999999999999998
Q ss_pred CCCCEEEEEecccCcchhhhcc
Q 003885 759 GRPPIVGILTRHDFMPEHVLGL 780 (789)
Q Consensus 759 ~~~~vvGIITr~DLl~~~~~~~ 780 (789)
+|+++|+||+.|+++...++.
T Consensus 241 -~g~lvGiIT~~Dil~~i~~e~ 261 (286)
T 2oux_A 241 -DDHLLGIVTVDDIIDVIDDEA 261 (286)
T ss_dssp -TCBEEEEEEHHHHHHHHHHHH
T ss_pred -CCeEEEEEEHHHHHHHHHHHh
Confidence 789999999999998766543
No 49
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=99.48 E-value=7.8e-14 Score=147.89 Aligned_cols=124 Identities=19% Similarity=0.149 Sum_probs=105.2
Q ss_pred cccceeecccCCeEEecCCCcHHHHHHHHhhc-----CCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCcccccccc
Q 003885 604 KNLVASDVVSGPLITFSGVEKVGNIMHALRLT-----RHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTM 678 (789)
Q Consensus 604 ~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~-----~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~ 678 (789)
...+++++|+++++++++++++.++++.|+++ +++.+||+|++ ++++|+|+.+|++...
T Consensus 133 ~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~-----~~lvGivt~~dll~~~----------- 196 (278)
T 2yvy_A 133 EEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-----GRLKGVLSLRDLIVAD----------- 196 (278)
T ss_dssp CTTBGGGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTT-----CBEEEEEEHHHHHHSC-----------
T ss_pred CcchHHhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCC-----CCEEEEEEHHHHhcCC-----------
Confidence 45689999999999999999999999999987 67899999986 8999999999995420
Q ss_pred CCcccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCC
Q 003885 679 TGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTP 758 (789)
Q Consensus 679 ~~~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~ 758 (789)
....++++|++++++|++++++.+++++|++.+.+++||||+
T Consensus 197 ------------------------------------~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-- 238 (278)
T 2yvy_A 197 ------------------------------------PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDE-- 238 (278)
T ss_dssp ------------------------------------TTCBSTTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECT--
T ss_pred ------------------------------------CCCcHHHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeC--
Confidence 013467799999999999999999999999999999999998
Q ss_pred CCCCEEEEEecccCcchhhhccCc
Q 003885 759 GRPPIVGILTRHDFMPEHVLGLYP 782 (789)
Q Consensus 759 ~~~~vvGIITr~DLl~~~~~~~~~ 782 (789)
+|+++|+||++|+++...++...
T Consensus 239 -~g~lvGivT~~Dil~~i~~e~~e 261 (278)
T 2yvy_A 239 -EGRLVGIVTVDDVLDVLEAEATE 261 (278)
T ss_dssp -TSBEEEEEEHHHHHHHC------
T ss_pred -CCeEEEEEEHHHHHHHHHHHhHH
Confidence 78999999999999877665543
No 50
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=99.46 E-value=5.4e-14 Score=149.89 Aligned_cols=134 Identities=18% Similarity=0.154 Sum_probs=113.2
Q ss_pred ccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccc
Q 003885 605 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIM 684 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~ 684 (789)
..+++++|+++++++++++++.++++.|.+++++.+||+|++ ++++|+|+++|++..+.+.. ..
T Consensus 155 ~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~-----~~~~Givt~~dl~~~~~~~~-~~---------- 218 (296)
T 3ddj_A 155 IFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDD-----NKVVGIVTVVNAIKQLAKAV-DK---------- 218 (296)
T ss_dssp CCBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-----SCEEEEEEHHHHHHHHHHHH-HH----------
T ss_pred cccHHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----CEEEEEEEHHHHHHHHHHHH-hh----------
Confidence 458999999999999999999999999999999999999976 89999999999988775311 00
Q ss_pred cccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEE
Q 003885 685 RRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIV 764 (789)
Q Consensus 685 ~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vv 764 (789)
+. .+......+.++|+++++++.+++++.+|+++|.+.+.+++||+|+ +|+++
T Consensus 219 -------~~-----------------~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~---~g~~~ 271 (296)
T 3ddj_A 219 -------LD-----------------PDYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNK---DNTIR 271 (296)
T ss_dssp -------TC-----------------THHHHTCBHHHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECT---TSCEE
T ss_pred -------cC-----------------hhhhcCcCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEECC---CCeEE
Confidence 00 0011234577899999999999999999999999999999999997 78999
Q ss_pred EEEecccCcchhhhccC
Q 003885 765 GILTRHDFMPEHVLGLY 781 (789)
Q Consensus 765 GIITr~DLl~~~~~~~~ 781 (789)
|+||++|++++..++..
T Consensus 272 Giit~~Dil~~l~~~~~ 288 (296)
T 3ddj_A 272 GIITERDLLIALHHILV 288 (296)
T ss_dssp EEEEHHHHHHHHHHHHH
T ss_pred EEEcHHHHHHHHHHHhc
Confidence 99999999998776543
No 51
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=99.44 E-value=1.2e-13 Score=145.79 Aligned_cols=154 Identities=14% Similarity=0.093 Sum_probs=107.8
Q ss_pred ccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhc-CccccccccCCccc
Q 003885 605 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG-KKFTKQKTMTGSDI 683 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~-~~~~~~~~~~~~~~ 683 (789)
..+++++|.+++.++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+|++..... +....... ..
T Consensus 125 ~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~-----~~~~Giit~~dl~~~~~~~~~~~~~~~----~~ 195 (282)
T 2yzq_A 125 GVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSE-----GNLVGIVDETDLLRDSEIVRIMKSTEL----AA 195 (282)
T ss_dssp GCBSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTT-----SCEEEEEEGGGGGGCGGGCC-------------
T ss_pred cCcHHHHhCCCCEEECCCCCHHHHHHHHHHcCCcEEEEEcCC-----CeEEEEEEHHHHhhhhhhhhhhccchh----hh
Confidence 567889999999999999999999999999999999999976 899999999999632111 00000000 00
Q ss_pred ccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCE
Q 003885 684 MRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPI 763 (789)
Q Consensus 684 ~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~v 763 (789)
.....+-+ . . ..++..-.........+++++|++++.++.+++++.+|+++|.+.+++++||+|+ +|++
T Consensus 196 ~~~~~~~~-~-~------~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~~~l 264 (282)
T 2yzq_A 196 SSEEEWIL-E-S------HPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRG---EGDL 264 (282)
T ss_dssp -------------------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEET---TTEE
T ss_pred hhhhhhhc-c-c------chHHHHhHhhhhhccCCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEECC---CCCE
Confidence 00000000 0 0 0000000000111235678999999999999999999999999999999999997 7899
Q ss_pred EEEEecccCcchhhh
Q 003885 764 VGILTRHDFMPEHVL 778 (789)
Q Consensus 764 vGIITr~DLl~~~~~ 778 (789)
+|+||++|+++...+
T Consensus 265 vGiit~~Dil~~~~~ 279 (282)
T 2yzq_A 265 IGLIRDFDLLKVLVK 279 (282)
T ss_dssp EEEEEHHHHGGGGCC
T ss_pred EEEEeHHHHHHHHHh
Confidence 999999999987654
No 52
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=99.44 E-value=2.1e-13 Score=147.12 Aligned_cols=128 Identities=20% Similarity=0.279 Sum_probs=109.2
Q ss_pred cccceeec---ccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCC
Q 003885 604 KNLVASDV---VSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTG 680 (789)
Q Consensus 604 ~~l~v~dv---M~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~ 680 (789)
.+.+++++ |.++++++++++++.++.+.|.+++++.+||+|++ ++++|+|+++|++..+....+.
T Consensus 185 ~~~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~-----~~~~Giit~~dl~~~~~~~~~~------- 252 (323)
T 3t4n_C 185 LKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN-----GYLINVYEAYDVLGLIKGGIYN------- 252 (323)
T ss_dssp CCSBGGGTTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-----CBEEEEEETTHHHHHHHTTHHH-------
T ss_pred hhCcHHHcCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECCC-----CeEEEEEeHHHHHHHHhhchhh-------
Confidence 34578899 99999999999999999999999999999999987 8999999999999887542110
Q ss_pred cccccccchhhhccccCCCCCcccccccchhhhhhcccccccccC------CCeeecCCCCHHHHHHHHHHcCCCeEEEe
Q 003885 681 SDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNT------SPYTVVETMSLAKAAVLFRQLALRHLCVV 754 (789)
Q Consensus 681 ~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~------~p~tV~~~~sL~~a~~lf~~~glr~LpVV 754 (789)
+....++++|++ +++++.+++++.+++++|.+.+.+++||+
T Consensus 253 ---------------------------------~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv 299 (323)
T 3t4n_C 253 ---------------------------------DLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVV 299 (323)
T ss_dssp ---------------------------------HTTSBHHHHGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEE
T ss_pred ---------------------------------hccCCHHHHHhhccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEE
Confidence 001234556666 78999999999999999999999999999
Q ss_pred eCCCCCCCEEEEEecccCcchhhhc
Q 003885 755 PKTPGRPPIVGILTRHDFMPEHVLG 779 (789)
Q Consensus 755 d~~~~~~~vvGIITr~DLl~~~~~~ 779 (789)
|+ +|+++|+||++|+++....+
T Consensus 300 d~---~~~l~Giit~~Dil~~l~~~ 321 (323)
T 3t4n_C 300 DD---VGRLVGVLTLSDILKYILLG 321 (323)
T ss_dssp CT---TSBEEEEEEHHHHHHHHHHC
T ss_pred CC---CCcEEEEEEHHHHHHHHHhc
Confidence 97 78999999999999987654
No 53
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=99.42 E-value=1.9e-13 Score=143.75 Aligned_cols=133 Identities=20% Similarity=0.255 Sum_probs=108.3
Q ss_pred ccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccc
Q 003885 605 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIM 684 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~ 684 (789)
..+++++|++++.++++++++.++.+.|.+++++.+||+++ ++++|+|+++|++..+.+.....
T Consensus 147 ~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~Givt~~dl~~~~~~~~~~~---------- 210 (280)
T 3kh5_A 147 NEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVVSE------GRLVGIITSTDFIKLLGSDWAFN---------- 210 (280)
T ss_dssp TCBSGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET------TEEEEEEEHHHHHHHHTSHHHHH----------
T ss_pred CCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC------CEEEEEEEHHHHHHHHhhhhhhh----------
Confidence 35789999999999999999999999999999999999954 89999999999988775421100
Q ss_pred cccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEE
Q 003885 685 RRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIV 764 (789)
Q Consensus 685 ~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vv 764 (789)
.+... .. ......+++++|+++++++++++++.+|+++|.+.+.+++||+|+ +|+++
T Consensus 211 ------~~~~~------~~--------~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~---~g~~~ 267 (280)
T 3kh5_A 211 ------HMQTG------NV--------REITNVRMEEIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDE---NLRIK 267 (280)
T ss_dssp ------HHHSC------CT--------HHHHHCBHHHHSBSSCCCBCTTCBHHHHHHHHHHHTCCEEEEECT---TCBEE
T ss_pred ------hhccc------ch--------hhhhCCcHHHHhcCCCEEECCCCCHHHHHHHHHHCCCCEEEEECC---CCeEE
Confidence 00000 00 001134577899999999999999999999999999999999997 78999
Q ss_pred EEEecccCcchh
Q 003885 765 GILTRHDFMPEH 776 (789)
Q Consensus 765 GIITr~DLl~~~ 776 (789)
|+||++|++++.
T Consensus 268 Givt~~dil~~l 279 (280)
T 3kh5_A 268 GIITEKDVLKYF 279 (280)
T ss_dssp EEEEHHHHGGGG
T ss_pred EEEeHHHHHHhh
Confidence 999999999864
No 54
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=99.39 E-value=5.5e-13 Score=151.70 Aligned_cols=120 Identities=20% Similarity=0.178 Sum_probs=105.7
Q ss_pred cccceeecccCCeEEecCCCcHHHHHHHHhhc-----CCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCcccccccc
Q 003885 604 KNLVASDVVSGPLITFSGVEKVGNIMHALRLT-----RHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTM 678 (789)
Q Consensus 604 ~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~-----~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~ 678 (789)
+..+++++|++++++++++++++++.+.++++ +++.+||+|++ ++++|+|+.+|++.. .
T Consensus 153 ~~~~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~-----~~lvGiVt~~Dll~~--~--------- 216 (473)
T 2zy9_A 153 EEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-----GRLKGVLSLRDLIVA--D--------- 216 (473)
T ss_dssp CTTBSTTTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTT-----SBEEEEEEHHHHHHS--C---------
T ss_pred CCCCHHHhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCC-----CcEEEEEEHHHHhcC--C---------
Confidence 46789999999999999999999999999986 46899999986 899999999999541 0
Q ss_pred CCcccccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCC
Q 003885 679 TGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTP 758 (789)
Q Consensus 679 ~~~~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~ 758 (789)
...+++++|++++++|++++++.++.++|++++++.+||||+
T Consensus 217 ------------------------------------~~~~v~dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe-- 258 (473)
T 2zy9_A 217 ------------------------------------PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDE-- 258 (473)
T ss_dssp ------------------------------------TTSBGGGTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECT--
T ss_pred ------------------------------------CCCcHHHHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcC--
Confidence 013467899999999999999999999999999999999998
Q ss_pred CCCCEEEEEecccCcchhhh
Q 003885 759 GRPPIVGILTRHDFMPEHVL 778 (789)
Q Consensus 759 ~~~~vvGIITr~DLl~~~~~ 778 (789)
+|+++|+||++|+++...+
T Consensus 259 -~g~lvGiIT~~Dil~~i~~ 277 (473)
T 2zy9_A 259 -EGRLVGIVTVDDVLDVLEA 277 (473)
T ss_dssp -TSBEEEEEEHHHHHHHHHH
T ss_pred -CCEEEEEEehHhhHHHHHH
Confidence 8999999999999986554
No 55
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=99.37 E-value=1.5e-12 Score=136.92 Aligned_cols=122 Identities=17% Similarity=0.216 Sum_probs=107.1
Q ss_pred ccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccc
Q 003885 605 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIM 684 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~ 684 (789)
+.+++|+|+++++++++++++.++++.|.+++++.+||+|++ ++++|+++.+|++..+.+...
T Consensus 83 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----~~~~Givt~~dl~~~~~~~~~------------ 145 (280)
T 3kh5_A 83 NEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDE-----NQLISLITERDVIRALLDKID------------ 145 (280)
T ss_dssp TSBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECTT-----CBEEEEEEHHHHHHHHGGGSC------------
T ss_pred hhhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCC-----CEEEEEEEHHHHHHHHhhcCC------------
Confidence 468999999999999999999999999999999999999987 899999999999887654210
Q ss_pred cccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEE
Q 003885 685 RRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIV 764 (789)
Q Consensus 685 ~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vv 764 (789)
....++++|++++.++++++++.++++.|++.+.+++||++ +|+++
T Consensus 146 ------------------------------~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~----~~~~~ 191 (280)
T 3kh5_A 146 ------------------------------ENEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVVS----EGRLV 191 (280)
T ss_dssp ------------------------------TTCBSGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE----TTEEE
T ss_pred ------------------------------CCCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE----CCEEE
Confidence 01245678888999999999999999999999999999995 68999
Q ss_pred EEEecccCcchhh
Q 003885 765 GILTRHDFMPEHV 777 (789)
Q Consensus 765 GIITr~DLl~~~~ 777 (789)
|+||++|+++...
T Consensus 192 Givt~~dl~~~~~ 204 (280)
T 3kh5_A 192 GIITSTDFIKLLG 204 (280)
T ss_dssp EEEEHHHHHHHHT
T ss_pred EEEEHHHHHHHHh
Confidence 9999999998654
No 56
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=99.37 E-value=1.5e-12 Score=141.20 Aligned_cols=128 Identities=15% Similarity=0.143 Sum_probs=107.2
Q ss_pred ccceee---cccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCc
Q 003885 605 NLVASD---VVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGS 681 (789)
Q Consensus 605 ~l~v~d---vM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~ 681 (789)
..+++| +|.+++.++++++++.++.+.|.+++++.+||+|++ ++++|+|+++|++..+....+..
T Consensus 181 ~~~v~~l~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~-----~~~~Giit~~dl~~~~~~~~~~~------- 248 (334)
T 2qrd_G 181 RVPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSE-----GTLLNVYESVDVMHLIQDGDYSN------- 248 (334)
T ss_dssp CCBGGGSSCSBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-----CBEEEEEETHHHHHHHTTSCGGG-------
T ss_pred hCcHHHhCCcccCCceEECCCCcHHHHHHHHHHcCCcEEEEEcCC-----CcEEEEEEHHHHHHHhhcccccc-------
Confidence 456778 589999999999999999999999999999999976 89999999999988765421100
Q ss_pred ccccccchhhhccccCCCCCcccccccchhhhhhccccccccc------CCCeeecCCCCHHHHHHHHHHcCCCeEEEee
Q 003885 682 DIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITN------TSPYTVVETMSLAKAAVLFRQLALRHLCVVP 755 (789)
Q Consensus 682 ~~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~------~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd 755 (789)
....+.++|+ +++.++.+++++.+++++|.+.+.+++||||
T Consensus 249 ---------------------------------~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd 295 (334)
T 2qrd_G 249 ---------------------------------LDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVD 295 (334)
T ss_dssp ---------------------------------GGSBHHHHHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCEEEEEC
T ss_pred ---------------------------------ccCcHHHHHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEC
Confidence 0123455666 3788999999999999999999999999999
Q ss_pred CCCCCCCEEEEEecccCcchhhhcc
Q 003885 756 KTPGRPPIVGILTRHDFMPEHVLGL 780 (789)
Q Consensus 756 ~~~~~~~vvGIITr~DLl~~~~~~~ 780 (789)
+ +|+++|+||++|+++....+.
T Consensus 296 ~---~g~l~Giit~~dil~~~~~~~ 317 (334)
T 2qrd_G 296 E---NLKLEGILSLADILNYIIYDK 317 (334)
T ss_dssp T---TCBEEEEEEHHHHHHHHHSCC
T ss_pred C---CCeEEEEEeHHHHHHHHHhcc
Confidence 7 789999999999998776554
No 57
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=99.37 E-value=7.1e-13 Score=141.18 Aligned_cols=122 Identities=18% Similarity=0.236 Sum_probs=107.1
Q ss_pred ccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccc
Q 003885 605 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIM 684 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~ 684 (789)
+.+++|+|+++++++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|++..+....
T Consensus 92 ~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~-----~~lvGivt~~dl~~~~~~~~------------- 153 (296)
T 3ddj_A 92 TTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDIN-----DKPVGIVTEREFLLLYKDLD------------- 153 (296)
T ss_dssp TSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTT-----SCEEEEEEHHHHGGGGGGSC-------------
T ss_pred cccHHHhccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCC-----CcEEEEEeHHHHHHhhhccc-------------
Confidence 567999999999999999999999999999999999999986 89999999999966543210
Q ss_pred cccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEE
Q 003885 685 RRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIV 764 (789)
Q Consensus 685 ~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vv 764 (789)
....+.++|++++.++.+++++.+++++|++.+.+++||+|+ +++++
T Consensus 154 ------------------------------~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~---~~~~~ 200 (296)
T 3ddj_A 154 ------------------------------EIFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDD---DNKVV 200 (296)
T ss_dssp ------------------------------CCCBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECT---TSCEE
T ss_pred ------------------------------ccccHHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcC---CCEEE
Confidence 012456788889999999999999999999999999999997 78999
Q ss_pred EEEecccCcchhh
Q 003885 765 GILTRHDFMPEHV 777 (789)
Q Consensus 765 GIITr~DLl~~~~ 777 (789)
|+||++|+++...
T Consensus 201 Givt~~dl~~~~~ 213 (296)
T 3ddj_A 201 GIVTVVNAIKQLA 213 (296)
T ss_dssp EEEEHHHHHHHHH
T ss_pred EEEEHHHHHHHHH
Confidence 9999999998654
No 58
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=99.31 E-value=7.8e-12 Score=131.80 Aligned_cols=120 Identities=14% Similarity=0.102 Sum_probs=100.6
Q ss_pred ccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHH-HHhcCccccccccCCccc
Q 003885 605 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV-LLKGKKFTKQKTMTGSDI 683 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~-lL~~~~~~~~~~~~~~~~ 683 (789)
+.+++|+|.+++.++++++++.++.+.|.+++.+.+||+|++ ++++|+|+++|+.. .+.+..
T Consensus 59 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~-----~~~~Giit~~di~~~~~~~~~------------ 121 (282)
T 2yzq_A 59 EEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSK-----GKPVGILTVGDIIRRYFAKSE------------ 121 (282)
T ss_dssp -----CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTT-----SCEEEEEEHHHHHHHTTTTCS------------
T ss_pred cCCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----CEEEEEEEHHHHHHHHHhccC------------
Confidence 568999999999999999999999999999999999999986 89999999999976 543210
Q ss_pred ccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCE
Q 003885 684 MRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPI 763 (789)
Q Consensus 684 ~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~v 763 (789)
......++++|+++++++++++++.++.+.|.+.+.+++||+|+ ++++
T Consensus 122 -----------------------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~---~~~~ 169 (282)
T 2yzq_A 122 -----------------------------KYKGVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDS---EGNL 169 (282)
T ss_dssp -----------------------------GGGGCBSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECT---TSCE
T ss_pred -----------------------------CcccCcHHHHhCCCCEEECCCCCHHHHHHHHHHcCCcEEEEEcC---CCeE
Confidence 00013456789899999999999999999999999999999997 7899
Q ss_pred EEEEecccCc
Q 003885 764 VGILTRHDFM 773 (789)
Q Consensus 764 vGIITr~DLl 773 (789)
+|+||++|++
T Consensus 170 ~Giit~~dl~ 179 (282)
T 2yzq_A 170 VGIVDETDLL 179 (282)
T ss_dssp EEEEEGGGGG
T ss_pred EEEEEHHHHh
Confidence 9999999999
No 59
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=99.27 E-value=1.6e-12 Score=148.38 Aligned_cols=116 Identities=18% Similarity=0.259 Sum_probs=88.9
Q ss_pred cceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCccccc
Q 003885 606 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMR 685 (789)
Q Consensus 606 l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~ 685 (789)
.+++++|.+++++++++++++++.+.|.+++|+++||+|++ ++++|+|+.+||+. . .
T Consensus 89 k~~~~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~-----~~lvGiVt~rDL~~---~----~----------- 145 (496)
T 4fxs_A 89 KIFEAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTEN-----NELVGIITGRDVRF---V----T----------- 145 (496)
T ss_dssp HHCCC--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSS-----SBEEEEEEHHHHTT---C----C-----------
T ss_pred cccccccccCceEECCCCCHHHHHHHHHHcCCcEEEEEccC-----CEEEEEEEHHHHhh---c----c-----------
Confidence 45678999999999999999999999999999999999986 89999999999931 0 0
Q ss_pred ccchhhhccccCCCCCcccccccchhhhhhccccccccc-C-CCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCE
Q 003885 686 RFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITN-T-SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPI 763 (789)
Q Consensus 686 ~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~-~-~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~v 763 (789)
+...+++++|+ + +++++++++++.+++++|++.+++++||||+ +|++
T Consensus 146 ----------------------------~~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe---~G~l 194 (496)
T 4fxs_A 146 ----------------------------DLTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVND---EFQL 194 (496)
T ss_dssp ----------------------------CTTSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECT---TSBC
T ss_pred ----------------------------cCCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CCCE
Confidence 01245677888 4 5899999999999999999999999999998 8999
Q ss_pred EEEEecccCcch
Q 003885 764 VGILTRHDFMPE 775 (789)
Q Consensus 764 vGIITr~DLl~~ 775 (789)
+|+||++|+++.
T Consensus 195 ~GiIT~~DIl~~ 206 (496)
T 4fxs_A 195 KGMITAKDFHKA 206 (496)
T ss_dssp CEEECCC-----
T ss_pred EEeehHhHHHHh
Confidence 999999999975
No 60
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=99.26 E-value=4.6e-12 Score=145.02 Aligned_cols=118 Identities=14% Similarity=0.207 Sum_probs=102.9
Q ss_pred cceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeC--CCCCCCCeEEEEEehHHHHHHHhcCccccccccCCccc
Q 003885 606 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDE--PPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDI 683 (789)
Q Consensus 606 l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~--~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~ 683 (789)
++.+++|.++++++++++++.++.+.|.+++++++||+|+ + ++++|+|+.+||+. . .
T Consensus 113 ~~~~~~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~-----~~lvGiVt~rDl~~---~----~--------- 171 (511)
T 3usb_A 113 KRSESGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDE-----RKLVGIITNRDMRF---I----Q--------- 171 (511)
T ss_dssp HTSSSCSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTT-----CBEEEEEEHHHHTT---C----C---------
T ss_pred hccccccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCC-----CEEEEEEEehHhhh---h----c---------
Confidence 3566889999999999999999999999999999999997 5 89999999999932 0 0
Q ss_pred ccccchhhhccccCCCCCcccccccchhhhhhcccccccccC-CCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCC
Q 003885 684 MRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNT-SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPP 762 (789)
Q Consensus 684 ~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~-~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~ 762 (789)
+...+++++|++ +++++++++++.+++++|++.+.+.+||||+ +|+
T Consensus 172 ------------------------------~~~~~V~~vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe---~g~ 218 (511)
T 3usb_A 172 ------------------------------DYSIKISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDN---NGV 218 (511)
T ss_dssp ------------------------------CSSSBHHHHCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECT---TSB
T ss_pred ------------------------------cCCCcHHHhcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeC---CCC
Confidence 002346778887 8999999999999999999999999999998 899
Q ss_pred EEEEEecccCcchhh
Q 003885 763 IVGILTRHDFMPEHV 777 (789)
Q Consensus 763 vvGIITr~DLl~~~~ 777 (789)
++|+||++|+++...
T Consensus 219 l~GiIT~~Dil~~~~ 233 (511)
T 3usb_A 219 LQGLITIKDIEKVIE 233 (511)
T ss_dssp EEEEEEHHHHHHHHH
T ss_pred EeeeccHHHHHHhhh
Confidence 999999999998654
No 61
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=99.25 E-value=2.1e-11 Score=131.91 Aligned_cols=130 Identities=21% Similarity=0.176 Sum_probs=103.4
Q ss_pred ceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeC-CCCCCCCeEEEEEehHHHHHHHhcCccccccccCCccccc
Q 003885 607 VASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDE-PPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMR 685 (789)
Q Consensus 607 ~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~-~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~ 685 (789)
+++++|.++++++++++++.++++.|.+++++.+||+|+ + ++++|+|+.+|++..+.... ...
T Consensus 119 ~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~-----~~~~Givt~~dl~~~~~~~~-~~~---------- 182 (330)
T 2v8q_E 119 VYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPES-----GNTLYILTHKRILKFLKLFI-TEF---------- 182 (330)
T ss_dssp HHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTT-----CCEEEEECHHHHHHHHHHHS-CSS----------
T ss_pred HHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCC-----CcEEEEEcHHHHHHHHHHHh-hcc----------
Confidence 456889999999999999999999999999999999997 5 89999999999988765311 000
Q ss_pred ccchhhhccccCCCCCcccccccchhhhhhcccccc--ccc-CCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCC
Q 003885 686 RFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHP--ITN-TSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPP 762 (789)
Q Consensus 686 ~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~--im~-~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~ 762 (789)
...++. ...+++ +|+ +++.++.+++++.++.++|.+.+.+++||+|+ +++
T Consensus 183 --~~~~~~----------------------~~~v~~~~v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~---~~~ 235 (330)
T 2v8q_E 183 --PKPEFM----------------------SKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDE---KGR 235 (330)
T ss_dssp --SCCGGG----------------------GSBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECT---TSB
T ss_pred --Cchhhh----------------------cCCHHHhcccCcCCceEECCCCCHHHHHHHHHHcCCCeEEEECC---CCc
Confidence 000000 011122 244 67889999999999999999999999999997 789
Q ss_pred EEEEEecccCcchhhhc
Q 003885 763 IVGILTRHDFMPEHVLG 779 (789)
Q Consensus 763 vvGIITr~DLl~~~~~~ 779 (789)
++|+||++|+++....+
T Consensus 236 l~Giit~~dl~~~~~~~ 252 (330)
T 2v8q_E 236 VVDIYSKFDVINLAAEK 252 (330)
T ss_dssp EEEEEEGGGTGGGGGSS
T ss_pred EEEEEEHHHHHHHHhcc
Confidence 99999999999876544
No 62
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=99.25 E-value=2.5e-14 Score=164.76 Aligned_cols=178 Identities=15% Similarity=0.169 Sum_probs=100.1
Q ss_pred HHHhHHHhhcCCCccHHHHHHHHHHHHHHHHhhCchhHHHHHHHcCCCcccc--cccccc----cccceeecccCCeEEe
Q 003885 546 SLCVILLELTNNLLMLPLVMLVLLISKTVADSFNQGVYDQIVKLKGLPYLEA--HAEPYM----KNLVASDVVSGPLITF 619 (789)
Q Consensus 546 s~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~~~~iy~~~l~~kg~p~l~~--~~~~~l----~~l~v~dvM~~~vvtv 619 (789)
+.+.|..|+|+++.+.+|+|.+.+-... ...+.+.....++..+++. .++... +-.+++|+|.++++++
T Consensus 47 ~~v~l~~eLt~~~~~~iP~vsa~md~~t-----~~~la~~ia~~gg~gii~~~~t~e~~~~~v~~v~~~~~im~~~~~~v 121 (514)
T 1jcn_A 47 DEVDLTSALTRKITLKTPLISSPMDTVT-----EADMAIAMALMGGIGFIHHNCTPEFQANEVRKVKNFEQGFITDPVVL 121 (514)
T ss_dssp GGCBCCEESSSSCEESSCEEECCCTTTC-----SHHHHHHHHHTTCEEEECCSSCHHHHHHHHHHHHTCCTTSCSSCCCC
T ss_pred ceeEEEeeccCCeeEeceEEEEehhhhh-----hhhHHHHHHhcCCeeEEecCCCHHHHHHHHHhhhhhhhccccCCEEE
Confidence 4577788999999988887755221100 1234444444455444421 111111 2246889999999999
Q ss_pred cCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhccccCCC
Q 003885 620 SGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGK 699 (789)
Q Consensus 620 ~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 699 (789)
+++++++++.+.|.+++++.+||+|++ ...++++|+|+++|+......
T Consensus 122 ~~~~tv~ea~~~m~~~~~~~~pVvd~~--~~~~~lvGiVt~~Dl~~~~~~------------------------------ 169 (514)
T 1jcn_A 122 SPSHTVGDVLEAKMRHGFSGIPITETG--TMGSKLVGIVTSRDIDFLAEK------------------------------ 169 (514)
T ss_dssp CC-----------------CEESCC----------CCEECTTTTC-----------------------------------
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEEeCC--CcCCEEEEEEEHHHHHhhhhc------------------------------
Confidence 999999999999999999999999972 002799999999988432100
Q ss_pred CCcccccccchhhhhhcccccccccC--CCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcchhh
Q 003885 700 GVKLEDLDIKEEEMEMFVDLHPITNT--SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHV 777 (789)
Q Consensus 700 ~~~i~di~l~~~~~~~~~dL~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~~~ 777 (789)
+...+++++|++ +++++++++++.+++++|.+.+.+++||||+ +++++|+||++|+++...
T Consensus 170 --------------~~~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~---~g~lvGiIt~~Dll~~~~ 232 (514)
T 1jcn_A 170 --------------DHTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVND---CDELVAIIARTDLKKNRD 232 (514)
T ss_dssp -------------------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESS---SSCCC----CCCCSSCCC
T ss_pred --------------cCCCCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECC---CCeEEEEEEHHHHHHHhh
Confidence 012356788988 8999999999999999999999999999998 899999999999998653
No 63
>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...
Probab=99.24 E-value=1.1e-10 Score=131.62 Aligned_cols=185 Identities=16% Similarity=0.251 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHH
Q 003885 107 LALLIGVLTGLAAVFCNFFVENIAGFKLLLINNLMLNDRHFMGFVANTSINLGLAILAAILCAYIAPAAAGSGIPEVKAY 186 (789)
Q Consensus 107 ~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~~ 186 (789)
..+++|+++|+++.+|+..+.+.++++.... ..++ ..++....+.+++.+. ..++.|+..|.|...++..
T Consensus 239 ~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~-----~~~~----~~~~~~~~l~g~~~g~-l~~~~p~~~G~G~~~i~~~ 308 (446)
T 4ene_A 239 LYLILGIIFGIFGPIFNKWVLGMQDLLHRVH-----GGNI----TKWVLMGGAIGGLCGL-LGFVAPATSGGGFNLIPIA 308 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCH----HHHHHHHHHHHHHHHH-HHHHCGGGSSCCSTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----ccch----hHHHHHHHHHHHHHHH-HHHHhHhhcCCcHHHHHHH
Confidence 4689999999999999999888876543221 1111 1122222223333333 3456799999999999888
Q ss_pred HhCCCCCCccchhhHHHHHHhhhhhhhccccccCchhHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhHHHhh
Q 003885 187 LNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCG 266 (789)
Q Consensus 187 lng~~~~~~l~~~~l~~K~~~~i~sv~sG~svG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv~~G 266 (789)
++|. .+-..-.-.++.|++.+.+|+++|.+.|...|+.-+||++|..+++..+. ++.. ...+-..+..+|
T Consensus 309 ~~~~-~~~~~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~-------~~p~--~~~~~~~~a~vG 378 (446)
T 4ene_A 309 TAGN-FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE-------LFPQ--YHLEAGTFAIAG 378 (446)
T ss_dssp HTTC-SCHHHHHHHHHHHHHHHHHHHTTTCSSBSHHHHHHHHHHHHHHHHHHHHH-------HCGG--GTCCHHHHHHHH
T ss_pred HcCC-chHHHHHHHHHHHHHHHHHHHccCCCcchhHHHHHHHHHHHHHHHHHHHH-------hCCc--cccCHHHHHHHH
Confidence 8863 11111134578999999999999999999999999999999999862111 1111 123456789999
Q ss_pred hhhhhhhhccCcchhhhHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 003885 267 AAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRG 314 (789)
Q Consensus 267 aAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~ 314 (789)
|||-++++-|+|++++++.+|.+.+ ...+.+.++++++|..+.+.
T Consensus 379 maa~~a~~~~aPlt~~vl~~Eltg~---~~~~lpl~ia~~ia~~v~~~ 423 (446)
T 4ene_A 379 MGALLAASIRAPLTGIILVLEMTDN---YQLILPMIITGLGATLLAQF 423 (446)
T ss_dssp HTHHHHHHTCCHHHHHHHHHHHHCC---GGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHCC---hhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999875 34556677777777766653
No 64
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=99.23 E-value=2e-11 Score=131.58 Aligned_cols=132 Identities=11% Similarity=0.079 Sum_probs=101.6
Q ss_pred ceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccc
Q 003885 607 VASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRR 686 (789)
Q Consensus 607 ~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~ 686 (789)
++.++|.++++++++++++.++++.|.+++++.+||+|++...+.++++|+|+.+|++..+....-.
T Consensus 115 ~~~~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~~------------- 181 (323)
T 3t4n_C 115 RALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRE------------- 181 (323)
T ss_dssp HHTTC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCGG-------------
T ss_pred HHhCCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCCc-------------
Confidence 4566788999999999999999999999999999999986211112499999999998876531100
Q ss_pred cchhhhccccCCCCCcccccccchhhhhhccccccc---ccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCE
Q 003885 687 FKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPI---TNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPI 763 (789)
Q Consensus 687 ~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~i---m~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~v 763 (789)
.++ ....++++ |++++.++.+++++.++.++|.+.+.+++||+|+ +|++
T Consensus 182 ---~~~----------------------~~~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~---~~~~ 233 (323)
T 3t4n_C 182 ---THF----------------------LKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE---NGYL 233 (323)
T ss_dssp ---GGG----------------------CCSBGGGTTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TCBE
T ss_pred ---hhh----------------------hhCcHHHcCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECC---CCeE
Confidence 000 01234556 8889999999999999999999999999999997 7899
Q ss_pred EEEEecccCcchhhhc
Q 003885 764 VGILTRHDFMPEHVLG 779 (789)
Q Consensus 764 vGIITr~DLl~~~~~~ 779 (789)
+|+||++|+++....+
T Consensus 234 ~Giit~~dl~~~~~~~ 249 (323)
T 3t4n_C 234 INVYEAYDVLGLIKGG 249 (323)
T ss_dssp EEEEETTHHHHHHHTT
T ss_pred EEEEeHHHHHHHHhhc
Confidence 9999999998865443
No 65
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=99.23 E-value=1.2e-11 Score=133.79 Aligned_cols=132 Identities=13% Similarity=0.134 Sum_probs=103.0
Q ss_pred cceeec--cc-CCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcc
Q 003885 606 LVASDV--VS-GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSD 682 (789)
Q Consensus 606 l~v~dv--M~-~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~ 682 (789)
.+++++ |+ +++.++++++++.++.+.|.+++++.+||+|++ ++++|+|+++|++..+.++.+..
T Consensus 190 ~~v~~~~v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~-----~~l~Giit~~dl~~~~~~~~~~~-------- 256 (330)
T 2v8q_E 190 KSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEK-----GRVVDIYSKFDVINLAAEKTYNN-------- 256 (330)
T ss_dssp SBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTT-----SBEEEEEEGGGTGGGGGSSCCCC--------
T ss_pred CCHHHhcccCcCCceEECCCCCHHHHHHHHHHcCCCeEEEECCC-----CcEEEEEEHHHHHHHHhcccccc--------
Confidence 344554 65 788999999999999999999999999999976 89999999999976554321100
Q ss_pred cccccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCC
Q 003885 683 IMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPP 762 (789)
Q Consensus 683 ~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~ 762 (789)
...++.+++ +.+..|.++++++.+++++.+++++|.+.+.+++||+|+ +|+
T Consensus 257 --~~~~v~~~~------------------------~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~---~g~ 307 (330)
T 2v8q_E 257 --LDVSVTKAL------------------------QHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDE---HDV 307 (330)
T ss_dssp --CSSBHHHHG------------------------GGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECT---TSB
T ss_pred --ccCcHHHHH------------------------hccccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcC---CCc
Confidence 001111111 112345688999999999999999999999999999997 789
Q ss_pred EEEEEecccCcchhhhc
Q 003885 763 IVGILTRHDFMPEHVLG 779 (789)
Q Consensus 763 vvGIITr~DLl~~~~~~ 779 (789)
++|+||++|+++...++
T Consensus 308 l~Giit~~Dil~~~~~~ 324 (330)
T 2v8q_E 308 VKGIVSLSDILQALVLT 324 (330)
T ss_dssp EEEEEEHHHHHHHHHSS
T ss_pred EEEEEeHHHHHHHHHhh
Confidence 99999999999877654
No 66
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=99.22 E-value=1.6e-10 Score=130.98 Aligned_cols=185 Identities=17% Similarity=0.279 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHH
Q 003885 106 TLALLIGVLTGLAAVFCNFFVENIAGFKLLLINNLMLNDRHFMGFVANTSINLGLAILAAILCAYIAPAAAGSGIPEVKA 185 (789)
Q Consensus 106 ~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~ 185 (789)
...+++|+++|+++.+|+....+.++++.... ..+.+. +++ -.++.+++.+.+ .++.|+..|.|...++.
T Consensus 253 ~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~-----~~~~~~-~~~---~~~i~gl~~g~l-~~~~P~~lG~G~~~i~~ 322 (465)
T 1ots_A 253 WLYLILGIIFGIFGPIFNKWVLGMQDLLHRVH-----GGNITK-WVL---MGGAIGGLCGLL-GFVAPATSGGGFNLIPI 322 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCHHH-HHH---HHHHHHHHHHHH-HHHCGGGSSCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cCCchh-HHH---HHHHHHHHHHHH-HHHhHhhcCChHHHHHH
Confidence 46799999999999999999888877653221 111111 111 122334444433 45679999999999998
Q ss_pred HHhCCCCCCccchhhHHHHHHhhhhhhhccccccCchhHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhHHHh
Q 003885 186 YLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITC 265 (789)
Q Consensus 186 ~lng~~~~~~l~~~~l~~K~~~~i~sv~sG~svG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv~~ 265 (789)
.+++. .+-..-.-.++.|++.+.+++++|.+.|...|+.-+||++|..+++.... ++.. ...+-..+..+
T Consensus 323 ~~~~~-~~~~~l~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~-------~~p~--~~~~~~~~alv 392 (465)
T 1ots_A 323 ATAGN-FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE-------LFPQ--YHLEAGTFAIA 392 (465)
T ss_dssp HHHTC-SCHHHHHHHHHHHHHHHHHHHHTTCSSBSHHHHHHHHHHHHHHHHHHHHH-------HCGG--GTCCHHHHHHH
T ss_pred HHcCC-chHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHHHHHHHHHHHHHHHH-------HCCc--ccccHHHHHHH
Confidence 88872 22112344678999999999999999999999999999999999872110 1111 12355679999
Q ss_pred hhhhhhhhhccCcchhhhHHHhHhhhhhhhhhHHHHHHHHHHHHHHHH
Q 003885 266 GAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLR 313 (789)
Q Consensus 266 GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~ 313 (789)
||||-++++.|+|+++++..+|.+.+ ...+.+.++++++|..+.+
T Consensus 393 Gmaa~~a~v~raPlt~ivlv~Eltg~---~~~llpl~ia~~iA~~v~~ 437 (465)
T 1ots_A 393 GMGALLAASIRAPLTGIILVLEMTDN---YQLILPMIITGLGATLLAQ 437 (465)
T ss_dssp HHTHHHHHTSCCHHHHHHHHHHHHCC---GGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999865 2344566666666655544
No 67
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=99.22 E-value=1.7e-11 Score=140.33 Aligned_cols=116 Identities=14% Similarity=0.182 Sum_probs=102.6
Q ss_pred eeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEee--CCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCccccc
Q 003885 608 ASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVID--EPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMR 685 (789)
Q Consensus 608 v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd--~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~ 685 (789)
++|+|.++++++++++++.++++.|.+++++.+||+| ++ ++++|+|+.+||+... +
T Consensus 92 ~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~-----~~lvGivt~~Dl~~~~-~---------------- 149 (491)
T 1zfj_A 92 SENGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLAN-----RKLVGIITNRDMRFIS-D---------------- 149 (491)
T ss_dssp HTTTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTT-----CBEEEEEEHHHHHHCS-C----------------
T ss_pred HHhcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCC-----CEEEEEEEHHHHhhhc-c----------------
Confidence 4679999999999999999999999999999999999 55 8999999999995320 0
Q ss_pred ccchhhhccccCCCCCcccccccchhhhhhcccccccccC-CCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEE
Q 003885 686 RFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNT-SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIV 764 (789)
Q Consensus 686 ~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~-~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vv 764 (789)
...+++++|++ +++++++++++.+++++|++.+.+++||||+ +++++
T Consensus 150 -----------------------------~~~~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~---~g~lv 197 (491)
T 1zfj_A 150 -----------------------------YNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDN---SGRLS 197 (491)
T ss_dssp -----------------------------SSSBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECT---TSBEE
T ss_pred -----------------------------CCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CCcEE
Confidence 01356778988 8999999999999999999999999999998 89999
Q ss_pred EEEecccCcchhh
Q 003885 765 GILTRHDFMPEHV 777 (789)
Q Consensus 765 GIITr~DLl~~~~ 777 (789)
|+||++|+++...
T Consensus 198 Givt~~Dil~~~~ 210 (491)
T 1zfj_A 198 GLITIKDIEKVIE 210 (491)
T ss_dssp EEEEHHHHHHHHH
T ss_pred EEEEHHHHHHHHh
Confidence 9999999998765
No 68
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=99.17 E-value=3.2e-12 Score=145.74 Aligned_cols=116 Identities=19% Similarity=0.209 Sum_probs=3.5
Q ss_pred cceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCccccc
Q 003885 606 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMR 685 (789)
Q Consensus 606 l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~ 685 (789)
.+++++|.++++++++++++.++.+.|.+++++.+||+| + ++++|+|+.+||....
T Consensus 88 k~~~~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~-----g~lvGIVt~rDl~~~~------------------ 143 (490)
T 4avf_A 88 KKHETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE-Q-----GELVGIVTGRDLRVKP------------------ 143 (490)
T ss_dssp HHCCC---------------------------------------------------------------------------
T ss_pred cccccCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE-C-----CEEEEEEEhHHhhhcc------------------
Confidence 457889999999999999999999999999999999999 4 7999999999984210
Q ss_pred ccchhhhccccCCCCCcccccccchhhhhhccccccccc-C-CCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCE
Q 003885 686 RFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITN-T-SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPI 763 (789)
Q Consensus 686 ~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~-~-~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~v 763 (789)
+...+++++|+ + +++++++++++.+++++|++.+++.+||||+ ++++
T Consensus 144 ----------------------------~~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe---~g~l 192 (490)
T 4avf_A 144 ----------------------------NAGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDE---NFYL 192 (490)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------ccCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcC---CCcE
Confidence 01235677898 4 6899999999999999999999999999998 8999
Q ss_pred EEEEecccCcchh
Q 003885 764 VGILTRHDFMPEH 776 (789)
Q Consensus 764 vGIITr~DLl~~~ 776 (789)
+|+||++|+++..
T Consensus 193 vGiIT~~Dil~~~ 205 (490)
T 4avf_A 193 RGLVTFRDIEKAK 205 (490)
T ss_dssp -------------
T ss_pred EEEEehHHhhhhc
Confidence 9999999999853
No 69
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=99.17 E-value=2.4e-12 Score=147.50 Aligned_cols=173 Identities=16% Similarity=0.165 Sum_probs=29.4
Q ss_pred HHhHHHhhcCCCccHHHHHHHHHHHHHHHHhhCchhHHHHHHHcCCCccccccc------ccccccceeecccCCeEEec
Q 003885 547 LCVILLELTNNLLMLPLVMLVLLISKTVADSFNQGVYDQIVKLKGLPYLEAHAE------PYMKNLVASDVVSGPLITFS 620 (789)
Q Consensus 547 ~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~~~~iy~~~l~~kg~p~l~~~~~------~~l~~l~v~dvM~~~vvtv~ 620 (789)
-+-+..|+|+++.+..|++.+.+-. . ....+.....+..|+.++..... ...+-.+++|+|.+++++++
T Consensus 35 ~v~~~~eLt~~~~l~iP~is~~m~~-v----~~~~lA~al~~~GglG~i~~~~~~e~~~~~v~~v~~~~~iM~~~~~~v~ 109 (494)
T 1vrd_A 35 DVKIDTRLTRQIRINIPLVSAAMDT-V----TEAALAKALAREGGIGIIHKNLTPDEQARQVSIVKKTENGIIYDPITVT 109 (494)
T ss_dssp GSCCCEESSSSCEESSSEEECCCTT-T----CSHHHHHHHHTTTCEEEECSSSCHHHHHHHHHHHHTC------------
T ss_pred ceEEEehhhCCCccCceeEecchHH-H----hHHHHHHHHHHcCCceEEecCCChHHHHHHHHhhhhHhhcCccCCeEEC
Confidence 3456678888887766765433111 0 02223333333334433221111 11223467899999999999
Q ss_pred CCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhccccCCCC
Q 003885 621 GVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKG 700 (789)
Q Consensus 621 ~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 700 (789)
++++++++++.|.+++++.+||+|++ ++++|+|+.+|++..- +
T Consensus 110 ~~~tv~ea~~~m~~~~~~~~pVvd~~-----~~lvGivt~~Dl~~~~-~------------------------------- 152 (494)
T 1vrd_A 110 PDMTVKEAIDLMAEYKIGGLPVVDEE-----GRLVGLLTNRDVRFEK-N------------------------------- 152 (494)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCHHHHHHHHHHcCceEEEEEcCC-----CEEEEEEEHHHHHhhc-C-------------------------------
Confidence 99999999999999999999999976 8999999999995310 0
Q ss_pred CcccccccchhhhhhcccccccccC--CCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcchhhh
Q 003885 701 VKLEDLDIKEEEMEMFVDLHPITNT--SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHVL 778 (789)
Q Consensus 701 ~~i~di~l~~~~~~~~~dL~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~~~~ 778 (789)
....++++|++ ++.++++++++.+++++|.+.+++++||||+ +++++|+||++|+++....
T Consensus 153 --------------~~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~---~g~lvGiIt~~Dll~~~~~ 215 (494)
T 1vrd_A 153 --------------LSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSK---DNKLVGLITIKDIMSVIEH 215 (494)
T ss_dssp -------------------------------------------------------------------------CHHHHTC
T ss_pred --------------CCCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcC---CCeEEEEEEHHHHHhhhcc
Confidence 01346778988 8999999999999999999999999999998 8899999999999987543
No 70
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Probab=99.17 E-value=2.4e-10 Score=129.11 Aligned_cols=181 Identities=15% Similarity=0.140 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHH
Q 003885 106 TLALLIGVLTGLAAVFCNFFVENIAGFKLLLINNLMLNDRHFMGFVANTSINLGLAILAAILCAYIAPAAAGSGIPEVKA 185 (789)
Q Consensus 106 ~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~ 185 (789)
...+++|+++|+++.+|+..+.+..+++... . ..+++.+ +++.+++.+. +.++.|+..|.|...++.
T Consensus 248 ~~~illGi~~Gl~g~lf~~~~~~~~~~~~~~--------~-~~~~~~~---~~l~g~~~g~-l~~~~p~~~G~G~~~i~~ 314 (466)
T 3nd0_A 248 WMFIILGILFGVMGYTFNRGLFKVLDWFDRL--------P-PLATKWK---GFLLGSIIGI-LSLFPLPLTDGGDNAVLW 314 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------C-HHHHHHH---HHHHHHHHHH-HTTSSSSCSSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------c-cccHHHH---HHHHHHHHHH-HHHHHHHHcCCcHHHHHH
Confidence 3578899999999999999988776653211 0 0111111 2233333333 346789999999999998
Q ss_pred HHhCCCCCCccchhhHHHHHHhhhhhhhccccccCchhHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhHHHh
Q 003885 186 YLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITC 265 (789)
Q Consensus 186 ~lng~~~~~~l~~~~l~~K~~~~i~sv~sG~svG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv~~ 265 (789)
.++|. .+-..-.-.++.|++.+.+|+++|.+.|...|+.-+||++|..+++.... ++.. ...+-..+..+
T Consensus 315 ~~~~~-~~~~~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~-------~~p~--~~~~~~~~a~v 384 (466)
T 3nd0_A 315 AFNSQ-SHFSTLILVFCGRFLLTLICYGSGAIGGIFAPMLGIASIVSVAMARHFHL-------LFPS--QIPEPAVMAIA 384 (466)
T ss_dssp HTTSC-CCHHHHHHHHHHHHHHHHHHHHTTCBCCSHHHHHHHHHHHHHHHHHHHHH-------HCTT--TCSSTHHHHHH
T ss_pred HHcCC-ccHHHHHHHHHHHHHHHHHHHhCCCCCceehHHHHHHHHHHHHHHHHHHH-------hCCc--cccCHHHHHHH
Confidence 88872 11111235678999999999999999999999999999999999872110 1110 13456679999
Q ss_pred hhhhhhhhhccCcchhhhHHHhHhhhhhhhhhHHHHHHHHHHHHHHH
Q 003885 266 GAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVL 312 (789)
Q Consensus 266 GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~ 312 (789)
||||-++++-|+|++++++.+|++.+ ...+.+.++++++|..+.
T Consensus 385 Gmaa~~a~v~~aPlt~ivlv~Eltg~---~~~~lpl~ia~~iA~~v~ 428 (466)
T 3nd0_A 385 GMGALVAATVRAPLTAILLTIEMTDN---YFVILPLLVTCLVASVVA 428 (466)
T ss_dssp TTSHHHHHHHSCHHHHHHHHHHTTCC---CTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHCC---hHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999875 234455666666665554
No 71
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=99.11 E-value=8.1e-12 Score=139.39 Aligned_cols=121 Identities=18% Similarity=0.271 Sum_probs=2.9
Q ss_pred eecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccc
Q 003885 609 SDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFK 688 (789)
Q Consensus 609 ~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~ 688 (789)
+..|..++++++|+.+|+++.+++.+++|+++||+|+. ..+++|+|+|+.+|+...
T Consensus 141 e~g~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g--~~~~kLvGIvT~RD~rf~---------------------- 196 (556)
T 4af0_A 141 ENGFITDPLCLGPDATVGDVLEIKAKFGFCGVPITETG--EPDSKLLGIVTGRDVQFQ---------------------- 196 (556)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred ccCccCCCeEcCCCCCHHHHHHHHHHhCCCcccccccc--CcCCEEEEEEeccccccc----------------------
Confidence 34577789999999999999999999999999999973 123799999999998320
Q ss_pred hhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEe
Q 003885 689 AHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILT 768 (789)
Q Consensus 689 ~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIIT 768 (789)
+....++++|.++++|++++.++++|.++|.++++..+||||+ +++++|+||
T Consensus 197 -------------------------d~~~~V~evMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~---~g~LvGlIT 248 (556)
T 4af0_A 197 -------------------------DAETPIKSVMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDS---NGHLVSLVA 248 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------ccceEhhhhcccceEEecCCCCHHHHHHHHHHccccceeEEcc---CCcEEEEEE
Confidence 0123467899999999999999999999999999999999998 899999999
Q ss_pred cccCcchhhhccCccc
Q 003885 769 RHDFMPEHVLGLYPHI 784 (789)
Q Consensus 769 r~DLl~~~~~~~~~~l 784 (789)
++|+.+ .+.||.-
T Consensus 249 ~kDi~k---~~~~p~A 261 (556)
T 4af0_A 249 RSDLLK---NQNYPYA 261 (556)
T ss_dssp ------------CTTC
T ss_pred echhhh---hhhCCcc
Confidence 999987 3455543
No 72
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=99.10 E-value=6.2e-12 Score=144.07 Aligned_cols=125 Identities=16% Similarity=0.150 Sum_probs=4.4
Q ss_pred cccceeec-ccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcc
Q 003885 604 KNLVASDV-VSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSD 682 (789)
Q Consensus 604 ~~l~v~dv-M~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~ 682 (789)
+.++..|+ |.++++++++++++.++++.|.+++++.+||+|++ ...++++|+|+.+||+.. ..
T Consensus 94 ~~V~~~e~gM~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~--~~~g~lvGiVt~~Dl~~~-~~------------- 157 (503)
T 1me8_A 94 HAVKNFKAGFVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDG--TPHGVLLGLVTQRDYPID-LT------------- 157 (503)
T ss_dssp HHHHTTTC------------------------------------------------------------------------
T ss_pred hhhhhcccCcccCCeEECCCCcHHHHHHHHHHcCceEEEEEECC--CcCCeEEEEEEHHHHHhh-hc-------------
Confidence 44555566 99999999999999999999999999999999863 012689999999999542 00
Q ss_pred cccccchhhhccccCCCCCcccccccchhhhhhcccccccccCC--CeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCC
Q 003885 683 IMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTS--PYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGR 760 (789)
Q Consensus 683 ~~~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~--p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~ 760 (789)
+...+++++|+++ ++++++++++.+++++|++.+.+++||||+ +
T Consensus 158 -------------------------------~~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe---~ 203 (503)
T 1me8_A 158 -------------------------------QTETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDD---D 203 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------cccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcC---C
Confidence 0123467788887 999999999999999999999999999998 7
Q ss_pred CCEEEEEecccCcchhhh
Q 003885 761 PPIVGILTRHDFMPEHVL 778 (789)
Q Consensus 761 ~~vvGIITr~DLl~~~~~ 778 (789)
++++|+||++|+++....
T Consensus 204 g~lvGiIT~~Dil~~~~~ 221 (503)
T 1me8_A 204 QHLRYIVFRKDYDRSQVC 221 (503)
T ss_dssp ------------------
T ss_pred CeEEEEEEecHHHHhhhc
Confidence 899999999999987654
No 73
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=99.10 E-value=4.5e-13 Score=153.07 Aligned_cols=169 Identities=15% Similarity=0.217 Sum_probs=26.2
Q ss_pred HHHhHHHhhcCCCccHHHHHHHHHHHHHHHHhhCchhHHHHHHHcCCCcccc-----cccccc-cccceeecccCCeEEe
Q 003885 546 SLCVILLELTNNLLMLPLVMLVLLISKTVADSFNQGVYDQIVKLKGLPYLEA-----HAEPYM-KNLVASDVVSGPLITF 619 (789)
Q Consensus 546 s~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~~~~iy~~~l~~kg~p~l~~-----~~~~~l-~~l~v~dvM~~~vvtv 619 (789)
+.+.+..|+|+++.+..|+|.+.+.+. + ...+-...-+..|+-.++. +....+ +-.+.+|+|..+++++
T Consensus 32 ~~v~l~t~lt~~l~l~~PIi~a~m~~v--t---~~ela~ava~~GglG~i~~~~~~e~~~~~I~~v~~~~~~m~~~~~~v 106 (486)
T 2cu0_A 32 KDVDVSTRITPNVKLNIPILSAAMDTV--T---EWEMAVAMAREGGLGVIHRNMGIEEQVEQVKRVKRAERLIVEDVITI 106 (486)
T ss_dssp TTCBCCEEEETTEEESSSEEECCCTTT--C---SHHHHHHHHHTTCEEEECSSSCHHHHHHHHHHHHTCC----------
T ss_pred ceEEEEeeecCCcccccceEEccceee--c---HHHHHHHHHhcCCceeecCCCCHHHHHHHHHhhcchhhccccCceEE
Confidence 466678899999998888876543210 0 1111111112222222211 001111 2234678899999999
Q ss_pred cCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccccccchhhhccccCCC
Q 003885 620 SGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGK 699 (789)
Q Consensus 620 ~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 699 (789)
++++++.++.+.|.+++++.+||+|+ ++++|+|+.+||+. + .
T Consensus 107 ~~~~tv~ea~~~~~~~~~~~~pVvd~------~~lvGivt~~Dl~~---~-----~------------------------ 148 (486)
T 2cu0_A 107 APDETVDFALFLMEKHGIDGLPVVED------EKVVGIITKKDIAA---R-----E------------------------ 148 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCHHHHHHHHHHcCCcEEEEEEC------CEEEEEEEHHHhcc---C-----C------------------------
Confidence 99999999999999999999999986 68999999999853 1 0
Q ss_pred CCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcchh
Q 003885 700 GVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEH 776 (789)
Q Consensus 700 ~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~~ 776 (789)
..+++++|+++++++++++++.+++++|++.+.+++||||+ +++++|+||++|+++..
T Consensus 149 ----------------~~~v~~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde---~g~lvGiiT~~Dil~~~ 206 (486)
T 2cu0_A 149 ----------------GKLVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDE---RGKLVGLITMSDLVARK 206 (486)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred ----------------CCCHHHHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEec---CCeEEEEEEHHHHHHhh
Confidence 13456788888999999999999999999999999999998 78999999999999864
No 74
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=99.09 E-value=2.2e-10 Score=124.04 Aligned_cols=128 Identities=13% Similarity=0.099 Sum_probs=100.1
Q ss_pred ecccCCe--EEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCccccccc
Q 003885 610 DVVSGPL--ITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRF 687 (789)
Q Consensus 610 dvM~~~v--vtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~~~~ 687 (789)
++|.++. +++++++++.++++.|.+++++.+||+|++...+.+.++|+|+.+|++..+.......
T Consensus 111 ~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~~~------------- 177 (334)
T 2qrd_G 111 KIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKET------------- 177 (334)
T ss_dssp HHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCGGG-------------
T ss_pred hhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhccch-------------
Confidence 5677766 9999999999999999999999999999751001122999999999988765311000
Q ss_pred chhhhccccCCCCCcccccccchhhhhhcccccc---cccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEE
Q 003885 688 KAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHP---ITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIV 764 (789)
Q Consensus 688 ~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~---im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vv 764 (789)
+. ....+++ +|+++++++.+++++.+++++|.+.+.+++||+|+ +|+++
T Consensus 178 ---~~----------------------~~~~v~~l~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~---~~~~~ 229 (334)
T 2qrd_G 178 ---AM----------------------LRVPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNS---EGTLL 229 (334)
T ss_dssp ---GG----------------------CCCBGGGSSCSBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TCBEE
T ss_pred ---hh----------------------hhCcHHHhCCcccCCceEECCCCcHHHHHHHHHHcCCcEEEEEcC---CCcEE
Confidence 00 0112334 58889999999999999999999999999999997 78999
Q ss_pred EEEecccCcchhhh
Q 003885 765 GILTRHDFMPEHVL 778 (789)
Q Consensus 765 GIITr~DLl~~~~~ 778 (789)
|+||++|+++....
T Consensus 230 Giit~~dl~~~~~~ 243 (334)
T 2qrd_G 230 NVYESVDVMHLIQD 243 (334)
T ss_dssp EEEETHHHHHHHTT
T ss_pred EEEEHHHHHHHhhc
Confidence 99999999986544
No 75
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=98.88 E-value=2.1e-08 Score=118.09 Aligned_cols=191 Identities=15% Similarity=0.059 Sum_probs=129.7
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc----Cchh-HHHHHHHHHHHhhhhh-cccccccccCCCC
Q 003885 343 SYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINER----GPIF-KVLLVAAVSLLTSCCS-YGLPWLSHCIPCP 416 (789)
Q Consensus 343 ~~~~~~l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~-~~~p~~~~c~~~~ 416 (789)
+|....+++.+++|++.|+++.+|..+..++.+++..+... .++. .++.+++.+++++.+. ++.|...
T Consensus 5 ~~~~r~~~~~~lvGi~~gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~------ 78 (632)
T 3org_A 5 MYLLRLVCFLTLLGVTAALFIFAVDLAVHGLEELRMKISRLAGRFAGYILYVVSGVALCLLSTFWCAVLSTEAE------ 78 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccC------
Confidence 45567788889999999999999999999888776433211 0111 2234455555555443 5666541
Q ss_pred CCcccCCCCCCCCCCCccccccCCCcchhhhhhhccCchHHHHhhhcCCC---CccchHHHHHHHHHHHHHHHHHHhcCc
Q 003885 417 SYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGT---SKEFHLSTLLVFFVAIYCLGIITYGIA 493 (789)
Q Consensus 417 ~~~~~~~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~---~~~~~~~~L~~~~~~k~~lt~~t~g~g 493 (789)
| +| -.+ ++..+++.. .+..++.. ++.|++.+.+|.|+|
T Consensus 79 -----------G-sG-----------Ip~------------v~~~l~g~~~~~~~~~~~~~----~~~K~~~~~l~igsG 119 (632)
T 3org_A 79 -----------G-SG-----------LPQ------------MKSILSGFYDKMRSALELRV----LFAKALGLICAIGGG 119 (632)
T ss_dssp -----------B-CS-----------HHH------------HHHHTTTTHHHHGGGGSHHH----HHHHHHHHHHHHHTT
T ss_pred -----------C-CC-----------HHH------------HHHHHhCccccccccccHHH----HHHHHHHHHHHHhcC
Confidence 1 11 111 122111100 01122333 347999999999999
Q ss_pred CCcccchHHHHHHHHHHHHHHH--Hhhhc--cCcchHHHHHHHHHhhhhhhchhhHHHHhHHHhhcCC-C--ccHHHHHH
Q 003885 494 VPSGLFIPVILAGASYGRLVGN--LLGAL--SDLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNN-L--LMLPLVML 566 (789)
Q Consensus 494 ~~gG~f~P~l~iGa~~G~l~g~--~~~~~--~~~~~~~~alvGaaA~l~g~~r~pis~~vi~~ElTg~-~--~~l~pimi 566 (789)
.+.|.-.|++-+||+.|..+++ +++.. ...+--....+||||.+|++.++|++.+++.+|.... + ..+.|.++
T Consensus 120 ~s~GrEGP~vqiGa~ig~~~~~~~~f~~~~~~~~~~r~ll~aGaaAG~aaaF~aPlaGvlFalE~~~~~~~~~~~~~~~~ 199 (632)
T 3org_A 120 LPVGWEGPNVHIACIIAHQFYRLGVFKELCTDRALRLQTLAAACAVGLASSFGAPLGGVLYSIETIASFYLVQAFWKGVL 199 (632)
T ss_dssp CSCBSHHHHHHHHHHHHHHHTTSHHHHHHHHSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTCSEEETTHHHHHHH
T ss_pred CCccccchHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHHHHhCCccHhHHHHHHHHHHHHhHHHHHHHHH
Confidence 9999999999999999998887 65421 1223456889999999999999999999999998753 3 34677788
Q ss_pred HHHHHHHHHHhh
Q 003885 567 VLLISKTVADSF 578 (789)
Q Consensus 567 a~~ia~~v~~~~ 578 (789)
++++|..+.+.+
T Consensus 200 as~~a~~v~~~~ 211 (632)
T 3org_A 200 SALSGAIVYELL 211 (632)
T ss_dssp HHHHHHHHTTC-
T ss_pred HHHHHHHHHHHh
Confidence 888888887755
No 76
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=98.41 E-value=7e-07 Score=73.71 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=42.8
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHH
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLL 667 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL 667 (789)
.++++++++++.++.+.|.+++++++||+|+ ++++|+|+.+|++..+
T Consensus 1 k~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~------~~lvGIvT~~Di~~~~ 47 (70)
T 3ghd_A 1 KAIVVQPKDTVDRVAKILSRNKAGSAVVMEG------DEILGVVTERDILDKV 47 (70)
T ss_dssp CEEEECTTCBHHHHHHHHHHTTCSEEEEEET------TEEEEEEEHHHHHHHT
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC------CEEEEEEEHHHHHHHH
Confidence 3689999999999999999999999999986 7999999999997544
No 77
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=98.37 E-value=4.1e-07 Score=88.34 Aligned_cols=58 Identities=26% Similarity=0.284 Sum_probs=54.0
Q ss_pred cccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcchh
Q 003885 716 FVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEH 776 (789)
Q Consensus 716 ~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~~ 776 (789)
.+.++++|++++++|.+++++.+|+++|++.+++++||+|+ +|+++|+||.+|+++..
T Consensus 17 ~~~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~---~g~lvGiit~~Dll~~~ 74 (170)
T 4esy_A 17 QVPIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQ---NGHLVGIITESDFLRGS 74 (170)
T ss_dssp TSBGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECT---TSCEEEEEEGGGGGGGT
T ss_pred CCCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcC---CccEEEEEEHHHHHHHH
Confidence 36788999999999999999999999999999999999998 88999999999998754
No 78
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=98.26 E-value=1e-06 Score=89.13 Aligned_cols=102 Identities=16% Similarity=0.086 Sum_probs=55.4
Q ss_pred ccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhcCccccccccCCcccc
Q 003885 605 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIM 684 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~~~~~~~~~~~~~~~~ 684 (789)
+.+++|+|+++++++++++++.++.+.|.+++++.+||+|++ ++++|+|+++|++..+.......+
T Consensus 71 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----g~lvGiit~~Dil~~~~~~~~~~~--------- 136 (213)
T 1vr9_A 71 DSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEE-----MRLKGAVSLHDFLEALIEALAMDV--------- 136 (213)
T ss_dssp TSBSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTT-----CBEEEEEEHHHHHHHHHHSCC------------
T ss_pred CCcHHHHccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcCC-----CEEEEEEEHHHHHHHHHHHhcCCC---------
Confidence 346999999999999999999999999999999999999986 899999999999887654211000
Q ss_pred cccchhhhccccCCCCCcccccccchhhhhhcccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeC
Q 003885 685 RRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPK 756 (789)
Q Consensus 685 ~~~~~~d~~~~~~~~~~~i~di~l~~~~~~~~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~ 756 (789)
.. ..+. +.+.....++.++.++|.+.+.+.++|++.
T Consensus 137 -------~~-----------------------~~l~------~~~~~~~~~l~~~~~~l~~~~~~~l~V~~~ 172 (213)
T 1vr9_A 137 -------PG-----------------------IRFS------VLLEDKPGELRKVVDALALSNINILSVITT 172 (213)
T ss_dssp ------------------------------------------------------------------------
T ss_pred -------Cc-----------------------EEEE------EEeCCCCccHHHHHHHHHHCCCcEEEEEEE
Confidence 00 0000 011123345999999999999999999864
No 79
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=98.18 E-value=1.2e-06 Score=72.36 Aligned_cols=48 Identities=17% Similarity=0.252 Sum_probs=43.2
Q ss_pred CeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcchhhh
Q 003885 727 PYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHVL 778 (789)
Q Consensus 727 p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~~~~ 778 (789)
+++|.+++++.+|.++|++.+++++||+| +++++||||.+|+++....
T Consensus 2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d----~~~lvGIvT~~Di~~~~~~ 49 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVME----GDEILGVVTERDILDKVVA 49 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEE----TTEEEEEEEHHHHHHHTTT
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEEE----CCEEEEEEEHHHHHHHHHh
Confidence 57899999999999999999999999998 4789999999999875443
No 80
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=98.15 E-value=5.6e-06 Score=67.44 Aligned_cols=48 Identities=17% Similarity=0.236 Sum_probs=44.0
Q ss_pred CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHh
Q 003885 615 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLK 668 (789)
Q Consensus 615 ~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~ 668 (789)
+++++++++++.++++.|.+++++.+||+|+ ++++|+|+++|++..+.
T Consensus 1 ~~~~v~~~~~~~~a~~~m~~~~~~~~pV~d~------~~l~Givt~~dl~~~~~ 48 (70)
T 3fio_A 1 KAIVVQPKDTVDRVAKILSRNKAGSAVVMEG------DEILGVVTERDILDKVV 48 (70)
T ss_dssp CEEEECTTCBHHHHHHHHHHTTCSEEEEEET------TEEEEEEEHHHHHHHTT
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC------CEEEEEEEHHHHHHHHH
Confidence 4678999999999999999999999999996 69999999999987764
No 81
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=98.06 E-value=2.8e-06 Score=87.60 Aligned_cols=60 Identities=13% Similarity=0.168 Sum_probs=55.3
Q ss_pred ccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcchhhhc
Q 003885 717 VDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHVLG 779 (789)
Q Consensus 717 ~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~~~~~ 779 (789)
..++++|++++.++.+++++.+|+++|++.+++++||+|+ +|+++|+||.+|+++.+...
T Consensus 7 ~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~---~~~l~Giit~~di~~~~~~~ 66 (245)
T 3l2b_A 7 LKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADG---NNHLLGMLSTSNITATYMDI 66 (245)
T ss_dssp CBGGGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECT---TCBEEEEEEHHHHHHHHHCC
T ss_pred CcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC---CCEEEEEEEHHHHHHHHHHh
Confidence 4678899999999999999999999999999999999997 78999999999999877644
No 82
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=98.02 E-value=3.8e-06 Score=87.16 Aligned_cols=60 Identities=15% Similarity=0.223 Sum_probs=53.2
Q ss_pred ccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcchhh
Q 003885 717 VDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHV 777 (789)
Q Consensus 717 ~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~~~ 777 (789)
+.++++|++++++|.+++++.+|.++|.+.+++++||||+ .++++++|+|||+||++...
T Consensus 13 ~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~-~~~~~LvGiIt~~dl~~~l~ 72 (250)
T 2d4z_A 13 IQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDT-PDTNTLLGSIDRTEVEGLLQ 72 (250)
T ss_dssp CBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESC-TTTCBEEEEEEHHHHHHHHH
T ss_pred CChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEec-CCCCeEEEEEEHHHHHHHHH
Confidence 5578899999999999999999999999999999999986 22368999999999997644
No 83
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=97.98 E-value=5.4e-06 Score=78.16 Aligned_cols=59 Identities=15% Similarity=0.205 Sum_probs=53.2
Q ss_pred ccccccccC--CCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCC-CCEEEEEecccCcchhhh
Q 003885 717 VDLHPITNT--SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGR-PPIVGILTRHDFMPEHVL 778 (789)
Q Consensus 717 ~dL~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~-~~vvGIITr~DLl~~~~~ 778 (789)
..++++|++ ++.++++++++.+|.++|++.+.+++||+|+ + ++++|+||++|+++....
T Consensus 23 ~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~---~~~~lvGivt~~dl~~~~~~ 84 (148)
T 3lv9_A 23 KKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRK---NKDDILGFVHIRDLYNQKIN 84 (148)
T ss_dssp CBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESS---STTSEEEEEEHHHHHHHHHH
T ss_pred CCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC---CCCcEEEEEEHHHHHHHHhc
Confidence 457889998 8999999999999999999999999999987 6 799999999999976443
No 84
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=97.97 E-value=5.9e-06 Score=75.83 Aligned_cols=57 Identities=19% Similarity=0.212 Sum_probs=50.5
Q ss_pred cccccccCC--CeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCC-CCEEEEEecccCcchhh
Q 003885 718 DLHPITNTS--PYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGR-PPIVGILTRHDFMPEHV 777 (789)
Q Consensus 718 dL~~im~~~--p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~-~~vvGIITr~DLl~~~~ 777 (789)
.++++|++. +.++++++++.+|.++|++.+.+++||+|+ + ++++|+||.+|+++...
T Consensus 4 ~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~---~~~~~vGivt~~dl~~~~~ 63 (127)
T 3nqr_A 4 RVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE---DKDHIEGILMAKDLLPFMR 63 (127)
T ss_dssp BHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS---STTCEEEEEEGGGGGGGGS
T ss_pred CHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcC---CCCcEEEEEEHHHHHHHHh
Confidence 456788854 889999999999999999999999999997 6 79999999999997643
No 85
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=97.97 E-value=5.5e-06 Score=77.36 Aligned_cols=59 Identities=10% Similarity=0.193 Sum_probs=53.5
Q ss_pred ccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCC--CEEEEEecccCcchhhh
Q 003885 717 VDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRP--PIVGILTRHDFMPEHVL 778 (789)
Q Consensus 717 ~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~--~vvGIITr~DLl~~~~~ 778 (789)
+.++++|++++.++++++++.+|.++|++.+.+++||+|+ ++ +++|+||++|+++...+
T Consensus 5 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~~~~~~Givt~~dl~~~~~~ 65 (141)
T 2rih_A 5 IRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTAR---DNPKRPVAVVSERDILRAVAQ 65 (141)
T ss_dssp CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEET---TEEEEEEEEEEHHHHHHHHHT
T ss_pred eEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcC---CCcceeEEEEEHHHHHHHHhc
Confidence 5678899999999999999999999999999999999997 66 89999999999876543
No 86
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=97.96 E-value=7.1e-06 Score=75.53 Aligned_cols=58 Identities=16% Similarity=0.115 Sum_probs=51.1
Q ss_pred cccccccc--CCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCC-CCEEEEEecccCcchhh
Q 003885 717 VDLHPITN--TSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGR-PPIVGILTRHDFMPEHV 777 (789)
Q Consensus 717 ~dL~~im~--~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~-~~vvGIITr~DLl~~~~ 777 (789)
..++++|+ +++.++++++++.+|.++|++.+.+++||+|+ + ++++|+||.+|+++...
T Consensus 5 ~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~---~~~~~~Givt~~dl~~~~~ 65 (129)
T 3jtf_A 5 RTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYED---DRDNIIGILLAKDLLRYML 65 (129)
T ss_dssp CBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESS---STTCEEEEEEGGGGGGGGT
T ss_pred CCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CCCcEEEEEEHHHHHhHhc
Confidence 44677888 56789999999999999999999999999986 5 79999999999997643
No 87
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=97.95 E-value=4.8e-06 Score=79.85 Aligned_cols=59 Identities=22% Similarity=0.472 Sum_probs=53.7
Q ss_pred cccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcchhh
Q 003885 716 FVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHV 777 (789)
Q Consensus 716 ~~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~~~ 777 (789)
...++++|++++.++.+++++.+|+++|++.+.+++||+|+ +++++|+||++|+++...
T Consensus 4 ~~~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~---~~~lvGivt~~dl~~~~~ 62 (160)
T 2o16_A 4 MIKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA---NKKLLGIVSQRDLLAAQE 62 (160)
T ss_dssp CCBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TCBEEEEEEHHHHHHHHH
T ss_pred cCcHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CCcEEEEEeHHHHHHHHH
Confidence 35678899999999999999999999999999999999997 789999999999987654
No 88
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=97.94 E-value=6.2e-06 Score=77.90 Aligned_cols=59 Identities=19% Similarity=0.148 Sum_probs=53.9
Q ss_pred ccccccccC--CCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcchhhh
Q 003885 717 VDLHPITNT--SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHVL 778 (789)
Q Consensus 717 ~dL~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~~~~ 778 (789)
..++++|++ ++.++.+++++.+|.++|.+.+.+++||+|+ +++++|+||++|+++...+
T Consensus 28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~---~~~~~Givt~~dl~~~~~~ 88 (149)
T 3k2v_A 28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDD---DMNIIGIFTDGDLRRVFDT 88 (149)
T ss_dssp SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECT---TCBEEEEEEHHHHHHHHCS
T ss_pred cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECC---CCcEEEEecHHHHHHHHhc
Confidence 467899998 9999999999999999999999999999997 7899999999999975543
No 89
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=97.94 E-value=6.6e-06 Score=67.01 Aligned_cols=48 Identities=17% Similarity=0.251 Sum_probs=43.5
Q ss_pred CeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcchhhh
Q 003885 727 PYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHVL 778 (789)
Q Consensus 727 p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~~~~ 778 (789)
+.++.+++++.+|.++|++.+.+++||+|+ ++++|+||++|+++....
T Consensus 2 ~~~v~~~~~~~~a~~~m~~~~~~~~pV~d~----~~l~Givt~~dl~~~~~~ 49 (70)
T 3fio_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG----DEILGVVTERDILDKVVA 49 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEET----TEEEEEEEHHHHHHHTTT
T ss_pred CeEECCCCcHHHHHHHHHHcCCCEEEEEEC----CEEEEEEEHHHHHHHHHH
Confidence 568999999999999999999999999984 789999999999987544
No 90
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=97.93 E-value=8.3e-06 Score=75.69 Aligned_cols=55 Identities=18% Similarity=0.300 Sum_probs=51.1
Q ss_pred ccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 717 VDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 717 ~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
..++++|++++.++++++++.+|.++|.+.+.+++||+|+ +++++|+||++|+++
T Consensus 7 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~~~~Givt~~dl~~ 61 (138)
T 2yzi_A 7 APIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIND---DGNVVGFFTKSDIIR 61 (138)
T ss_dssp SBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECT---TSCEEEEEEHHHHHH
T ss_pred hhHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CCcEEEEEeHHHHHH
Confidence 4577899999999999999999999999999999999997 789999999999974
No 91
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=97.90 E-value=9.9e-06 Score=75.35 Aligned_cols=57 Identities=14% Similarity=0.183 Sum_probs=50.6
Q ss_pred ccccccc--CCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCC-CCEEEEEecccCcchhh
Q 003885 718 DLHPITN--TSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGR-PPIVGILTRHDFMPEHV 777 (789)
Q Consensus 718 dL~~im~--~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~-~~vvGIITr~DLl~~~~ 777 (789)
.++++|+ +++.++++++++.+|+++|++.+.+++||+|+ + ++++|+||.+|+++...
T Consensus 4 ~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~---~~~~~vGivt~~dl~~~~~ 63 (136)
T 3lfr_A 4 QVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGE---SHDDVLGVLLAKDLLPLIL 63 (136)
T ss_dssp BHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS---STTCEEEEEEGGGGGGGGG
T ss_pred ChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcC---CCCcEEEEEEHHHHHHHHH
Confidence 4567887 56789999999999999999999999999997 5 79999999999998654
No 92
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=97.89 E-value=1.1e-05 Score=74.84 Aligned_cols=57 Identities=14% Similarity=0.204 Sum_probs=51.8
Q ss_pred ccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccC-cchh
Q 003885 717 VDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDF-MPEH 776 (789)
Q Consensus 717 ~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DL-l~~~ 776 (789)
..++++|++++.++.+++++.++.++|++.+.+++||+|+ +++++|+||++|+ .+..
T Consensus 8 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~~~~Givt~~dl~~~~~ 65 (138)
T 2p9m_A 8 IKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDD---ENKVIGIVTTTDIGYNLI 65 (138)
T ss_dssp CBGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECT---TCBEEEEEEHHHHHHHHT
T ss_pred CCHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECC---CCeEEEEEEHHHHHHHHH
Confidence 4567899999999999999999999999999999999997 7899999999999 6543
No 93
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=97.85 E-value=2e-05 Score=71.36 Aligned_cols=59 Identities=20% Similarity=0.340 Sum_probs=54.2
Q ss_pred cceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhc
Q 003885 606 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 669 (789)
Q Consensus 606 l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~ 669 (789)
.+++++|.+++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|++..+.+
T Consensus 62 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~-----g~~~Givt~~dl~~~l~~ 120 (122)
T 3kpb_A 62 KTIEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDY-----RRVVGIVTSEDISRLFGG 120 (122)
T ss_dssp CBGGGTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-----CBEEEEEEHHHHHHHHC-
T ss_pred cCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECCC-----CCEEEEEeHHHHHHHhhc
Confidence 36899999999999999999999999999999999999987 899999999999987754
No 94
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=97.84 E-value=1.4e-05 Score=73.26 Aligned_cols=59 Identities=15% Similarity=0.190 Sum_probs=55.0
Q ss_pred cceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhc
Q 003885 606 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 669 (789)
Q Consensus 606 l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~ 669 (789)
.+++|+|.+++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|++..+.+
T Consensus 68 ~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~-----g~~~Giit~~dll~~l~~ 126 (128)
T 3gby_A 68 EKLGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADED-----GRYEGVVSRKRILGFLAE 126 (128)
T ss_dssp CBCCGGGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEECTT-----CBEEEEEEHHHHHHHHHT
T ss_pred CcHHHHccCCCcEECCCCCHHHHHHHHHhCCCcEEEEECCC-----CCEEEEEEHHHHHHHHHh
Confidence 67999999999999999999999999999999999999976 899999999999988754
No 95
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=97.83 E-value=1.8e-05 Score=75.52 Aligned_cols=58 Identities=16% Similarity=0.204 Sum_probs=51.9
Q ss_pred ccccccccC--CCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCC-CCEEEEEecccCcchhh
Q 003885 717 VDLHPITNT--SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGR-PPIVGILTRHDFMPEHV 777 (789)
Q Consensus 717 ~dL~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~-~~vvGIITr~DLl~~~~ 777 (789)
..++++|++ +++++++++++.+|.++|++.+.+++||+|+ + ++++|+||.+|+++...
T Consensus 38 ~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~---~~~~lvGivt~~dl~~~~~ 98 (156)
T 3oi8_A 38 LEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGE---DKDEVLGILHAKDLLKYMF 98 (156)
T ss_dssp CBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS---STTCEEEEEEGGGGGGGSS
T ss_pred CCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC---CCCcEEEEEEHHHHHHHHH
Confidence 557889986 7889999999999999999999999999997 5 48999999999998643
No 96
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=97.82 E-value=1.5e-05 Score=76.26 Aligned_cols=56 Identities=21% Similarity=0.365 Sum_probs=51.3
Q ss_pred ccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcchh
Q 003885 717 VDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEH 776 (789)
Q Consensus 717 ~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~~ 776 (789)
+.++++|++ ++++.+++++.+|.++|.+.+.+++||+|+ +++++|+||++|+++..
T Consensus 17 ~~v~~im~~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~---~~~~~Givt~~dl~~~~ 72 (159)
T 3fv6_A 17 LQVKDFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDR---DAVLVGVLSRKDLLRAS 72 (159)
T ss_dssp CBGGGSCBC-CCEEETTSBHHHHHHHHHHHTCSEEEEECT---TSCEEEEEEHHHHHHHH
T ss_pred CCHHHHcCC-CEEECCCCcHHHHHHHHHHCCCCEEEEEcC---CCcEEEEEeHHHHHHHh
Confidence 567889987 679999999999999999999999999997 78999999999999865
No 97
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=97.79 E-value=1.6e-05 Score=74.77 Aligned_cols=56 Identities=14% Similarity=0.175 Sum_probs=51.0
Q ss_pred ccccccccC--CCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcch
Q 003885 717 VDLHPITNT--SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPE 775 (789)
Q Consensus 717 ~dL~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~ 775 (789)
+.++++|.+ ++.++.+++++.+|.++|++.+.+++||+|+ +++++|+||++|+++.
T Consensus 5 ~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~~~~G~vt~~dl~~~ 62 (152)
T 4gqw_A 5 YTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDE---DWKLVGLVSDYDLLAL 62 (152)
T ss_dssp SBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECT---TCBEEEEEEHHHHTTC
T ss_pred EEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeC---CCeEEEEEEHHHHHHh
Confidence 456788988 7899999999999999999999999999997 7899999999999853
No 98
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=97.77 E-value=2.1e-05 Score=75.30 Aligned_cols=60 Identities=17% Similarity=0.228 Sum_probs=53.5
Q ss_pred ccccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhc
Q 003885 603 MKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 669 (789)
Q Consensus 603 l~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~ 669 (789)
..+.+++++|++++.++++++++.++++.|.+++ .+||||++ ++++|+|+++|+++.+.+
T Consensus 83 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~~-----g~l~GiiT~~Dil~~~~~ 142 (156)
T 3k6e_A 83 MADTDIVHMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVDAE-----GIFQGIITRKSILKAVNA 142 (156)
T ss_dssp HTTSBGGGTCBCSCCCBCTTCCHHHHHHHTTTSS--EEEEECTT-----SBEEEEEEHHHHHHHHHH
T ss_pred ccccCHHHhhcCCceecccccHHHHHHHHHHHcC--CeEEEecC-----CEEEEEEEHHHHHHHHHH
Confidence 3567899999999999999999999999998754 49999987 899999999999988754
No 99
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=97.76 E-value=1e-05 Score=76.30 Aligned_cols=58 Identities=9% Similarity=0.063 Sum_probs=51.9
Q ss_pred cccccccc--CCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcchhh
Q 003885 717 VDLHPITN--TSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHV 777 (789)
Q Consensus 717 ~dL~~im~--~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~~~ 777 (789)
..++++|+ +++.++.+++++.+|.++|.+.+.+++||+|+ +++++|+||++|+++...
T Consensus 15 ~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~---~~~~~Givt~~dl~~~~~ 74 (150)
T 3lqn_A 15 IFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDP---MYKLHGLISTAMILDGIL 74 (150)
T ss_dssp CBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TCBEEEEEEHHHHHHHTB
T ss_pred CChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECC---CCCEEEEEEHHHHHHHHH
Confidence 56778888 45889999999999999999999999999997 789999999999987553
No 100
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=97.76 E-value=1e-05 Score=74.52 Aligned_cols=59 Identities=14% Similarity=0.219 Sum_probs=50.6
Q ss_pred ccccccccC--CCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCC-CCEEEEEecccCcchhhh
Q 003885 717 VDLHPITNT--SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGR-PPIVGILTRHDFMPEHVL 778 (789)
Q Consensus 717 ~dL~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~-~~vvGIITr~DLl~~~~~ 778 (789)
..++++|++ ...++++++++.+|.++|++.+.+++||+|+ + ++++|+||++|+++....
T Consensus 6 ~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~---~~~~~~Givt~~dl~~~~~~ 67 (130)
T 3i8n_A 6 VPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSE---QKDNIIGFVHRLELFKMQQS 67 (130)
T ss_dssp -CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESS---STTCEEEECCHHHHHHHHHT
T ss_pred CCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeC---CCCcEEEEEEHHHHHHHHhc
Confidence 456788984 4558999999999999999999999999997 5 899999999999976543
No 101
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=97.76 E-value=3.8e-05 Score=70.90 Aligned_cols=60 Identities=15% Similarity=0.179 Sum_probs=55.2
Q ss_pred cccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhc
Q 003885 604 KNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 669 (789)
Q Consensus 604 ~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~ 669 (789)
.+.+++|+|.+++.++++++++.++++.|.+++.+.+||+| + ++++|+|+++|++..+.+
T Consensus 72 ~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~-----g~~~Giit~~dll~~~~~ 131 (135)
T 2rc3_A 72 KDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-D-----GKVIGLLSIGDLVKDAIS 131 (135)
T ss_dssp GGSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-T-----TEEEEEEEHHHHHHHHHC
T ss_pred ccCCHHHhccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe-C-----CEEEEEEEHHHHHHHHHh
Confidence 45789999999999999999999999999999999999999 5 899999999999887754
No 102
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=97.75 E-value=2.8e-05 Score=71.51 Aligned_cols=60 Identities=17% Similarity=0.284 Sum_probs=55.3
Q ss_pred ccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhc
Q 003885 605 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 669 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~ 669 (789)
+.+++|+|.+++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|++..+.+
T Consensus 66 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~-----g~~~Giit~~dll~~~~~ 125 (133)
T 2ef7_A 66 ETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDK-----GNLKGIISIRDITRAIDD 125 (133)
T ss_dssp TCBGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-----SCEEEEEEHHHHHHHHHH
T ss_pred ccCHHHHcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECCC-----CeEEEEEEHHHHHHHHHH
Confidence 467899999999999999999999999999999999999976 899999999999987764
No 103
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=97.75 E-value=3.1e-05 Score=70.29 Aligned_cols=60 Identities=13% Similarity=0.150 Sum_probs=54.6
Q ss_pred cccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhc
Q 003885 604 KNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 669 (789)
Q Consensus 604 ~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~ 669 (789)
...+++|+|.+++.++++++++.++++.|.+++.+.+||+|+ ++++|+|+++|++..+.+
T Consensus 63 ~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~------~~~~Gvit~~dl~~~l~~ 122 (125)
T 1pbj_A 63 AEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEED------DEIIGVISATDILRAKMA 122 (125)
T ss_dssp TTSBHHHHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEET------TEEEEEEEHHHHHHHHC-
T ss_pred cccCHHHHcCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEEC------CEEEEEEEHHHHHHHHHh
Confidence 356899999999999999999999999999999999999997 699999999999887754
No 104
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=97.74 E-value=1.1e-05 Score=74.36 Aligned_cols=55 Identities=24% Similarity=0.258 Sum_probs=50.7
Q ss_pred ccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 717 VDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 717 ~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
..++++|++++.++++++++.++.++|.+.+.+++||+|+ +++++|+||++|+++
T Consensus 8 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~~~~Givt~~dl~~ 62 (133)
T 1y5h_A 8 TTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGD---DDRLHGMLTDRDIVI 62 (133)
T ss_dssp CCHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECG---GGBEEEEEEHHHHHH
T ss_pred cCHHHHhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECC---CCeEEEEEeHHHHHH
Confidence 4567889899999999999999999999999999999987 789999999999984
No 105
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=97.74 E-value=2.4e-05 Score=76.75 Aligned_cols=58 Identities=19% Similarity=0.216 Sum_probs=53.0
Q ss_pred ccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcchhh
Q 003885 717 VDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHV 777 (789)
Q Consensus 717 ~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~~~ 777 (789)
..++++|++++.++.+++++.+|+++|.+.+.+++||+|+ +++++|+||++|+++...
T Consensus 9 ~~v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~---~g~~vGivt~~dl~~~~~ 66 (184)
T 1pvm_A 9 MRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDD---NGNDVGLLSERSIIKRFI 66 (184)
T ss_dssp CBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECT---TSCEEEEEEHHHHHHHTG
T ss_pred cCHHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CCcEEEEEeHHHHHHHHh
Confidence 5678899999999999999999999999999999999997 789999999999987543
No 106
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=97.74 E-value=1.4e-05 Score=75.89 Aligned_cols=58 Identities=17% Similarity=0.257 Sum_probs=51.5
Q ss_pred cccccccc--CCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcchhh
Q 003885 717 VDLHPITN--TSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHV 777 (789)
Q Consensus 717 ~dL~~im~--~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~~~ 777 (789)
..++++|. +++.++++++++.+|.++|.+.+.+++||+|+ +++++|+||++|+++...
T Consensus 15 ~~v~dim~p~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~---~~~~~Giit~~dl~~~~~ 74 (156)
T 3ctu_A 15 GQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTD---EKQFVGTIGLRDIMAYQM 74 (156)
T ss_dssp TTGGGGEEEGGGCCCEETTSBHHHHHHHHTTCSSSEEEEECC----CBEEEEEEHHHHHHHHH
T ss_pred HHHHHHcCcccCceEECCCCCHHHHHHHHHHCCCceEeEECC---CCEEEEEEcHHHHHHHHH
Confidence 35678888 67899999999999999999999999999997 789999999999997654
No 107
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=97.72 E-value=4.1e-05 Score=76.87 Aligned_cols=60 Identities=20% Similarity=0.222 Sum_probs=56.1
Q ss_pred ccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhc
Q 003885 605 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 669 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~ 669 (789)
+.+++|+|+++++++++++++.++.+.|.+++.+.+||||++ ++++|+|+++|++..+..
T Consensus 115 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~-----g~lvGiIT~~Dil~~i~~ 174 (205)
T 3kxr_A 115 HEPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVIDDA-----GELIGRVTLRAATALVRE 174 (205)
T ss_dssp TSBGGGGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECTT-----SBEEEEEEHHHHHHHHHH
T ss_pred cchHHHHhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCC-----CeEEEEEEHHHHHHHHHH
Confidence 467999999999999999999999999999999999999987 899999999999988864
No 108
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=97.72 E-value=1.9e-05 Score=74.92 Aligned_cols=58 Identities=12% Similarity=0.151 Sum_probs=52.2
Q ss_pred ccccccccC--CCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcchhh
Q 003885 717 VDLHPITNT--SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHV 777 (789)
Q Consensus 717 ~dL~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~~~ 777 (789)
..++++|.+ ++.++.+++++.+|.++|++.+.+++||+|+ +++++|+||++|+++...
T Consensus 11 ~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~---~~~~~Givt~~dl~~~~~ 70 (157)
T 2emq_A 11 MTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDT---SYKLHGLISMTMMMDAIL 70 (157)
T ss_dssp CBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECT---TCCEEEEEEHHHHHHHSB
T ss_pred CcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcC---CCCEEEEeeHHHHHHHHh
Confidence 557889986 8889999999999999999999999999997 789999999999987543
No 109
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=97.72 E-value=1.4e-05 Score=76.26 Aligned_cols=58 Identities=10% Similarity=0.082 Sum_probs=52.4
Q ss_pred ccccccccC--CCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcchhh
Q 003885 717 VDLHPITNT--SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHV 777 (789)
Q Consensus 717 ~dL~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~~~ 777 (789)
..++++|++ ++.++.+++++.+|.++|.+.+.+++||+|+ +++++|+||++|+++...
T Consensus 14 ~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~---~~~lvGivt~~dl~~~~~ 73 (159)
T 1yav_A 14 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDP---SYRLHGLIGTNMIMNSIF 73 (159)
T ss_dssp CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECT---TCBEEEEEEHHHHHHHHB
T ss_pred hhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECC---CCCEEEEeEHHHHHHHhh
Confidence 456788988 8999999999999999999999999999997 789999999999987543
No 110
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=97.71 E-value=2.9e-05 Score=75.34 Aligned_cols=61 Identities=16% Similarity=0.265 Sum_probs=56.1
Q ss_pred cccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhc
Q 003885 604 KNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 669 (789)
Q Consensus 604 ~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~ 669 (789)
.+.+++++|+++++++++++++.++++.|.+++++.+||+|++ ++++|+|+++|++..+.+
T Consensus 96 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----g~~vGiit~~dil~~~~~ 156 (180)
T 3sl7_A 96 YGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDAD-----GKLIGILTRGNVVRAALQ 156 (180)
T ss_dssp TTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTT-----CBEEEEEEHHHHHHHHHH
T ss_pred ccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCC-----CeEEEEEEHHHHHHHHHH
Confidence 3567999999999999999999999999999999999999976 899999999999988764
No 111
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=97.70 E-value=1.5e-05 Score=76.72 Aligned_cols=59 Identities=17% Similarity=0.199 Sum_probs=52.5
Q ss_pred cccccccccC---CCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcchhh
Q 003885 716 FVDLHPITNT---SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHV 777 (789)
Q Consensus 716 ~~dL~~im~~---~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~~~ 777 (789)
.+.++++|++ ++.++.+++++.+|.++|.+.+.+++||+|+ +++++|+||++|+++...
T Consensus 23 ~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~---~~~~~Givt~~dl~~~~~ 84 (165)
T 3fhm_A 23 ATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDA---DGVVLGIFTERDLVKAVA 84 (165)
T ss_dssp SCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECT---TSCEEEEEEHHHHHHHHH
T ss_pred hcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcC---CCeEEEEEEHHHHHHHHH
Confidence 3556788885 6899999999999999999999999999997 789999999999987544
No 112
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=97.69 E-value=5.4e-05 Score=71.72 Aligned_cols=59 Identities=20% Similarity=0.225 Sum_probs=54.7
Q ss_pred ccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhc
Q 003885 605 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 669 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~ 669 (789)
..+++++| +++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|++..+..
T Consensus 85 ~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~-----g~~vGivt~~dil~~l~~ 143 (153)
T 3oco_A 85 KAKISTIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEY-----GGTSGIITDKDVYEELFG 143 (153)
T ss_dssp TSBGGGTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTT-----SCEEEEECHHHHHHHHHC
T ss_pred CCcHHHHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCC-----CCEEEEeeHHHHHHHHhc
Confidence 56789999 899999999999999999999999999999987 899999999999988764
No 113
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=97.68 E-value=3.9e-05 Score=73.05 Aligned_cols=60 Identities=17% Similarity=0.156 Sum_probs=55.1
Q ss_pred cccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhc
Q 003885 604 KNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 669 (789)
Q Consensus 604 ~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~ 669 (789)
...+++|+|.+ ++++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|++..+.+
T Consensus 94 ~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----g~~vGiit~~dll~~l~~ 153 (157)
T 1o50_A 94 IAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEK-----GEIVGDLNSLEILLALWK 153 (157)
T ss_dssp SSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-----SCEEEEEEHHHHHHHHHH
T ss_pred cCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCC-----CEEEEEEEHHHHHHHHHH
Confidence 45789999999 9999999999999999999999999999976 899999999999988764
No 114
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=97.67 E-value=6.1e-05 Score=73.07 Aligned_cols=59 Identities=24% Similarity=0.203 Sum_probs=54.6
Q ss_pred ccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhc
Q 003885 605 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 669 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~ 669 (789)
+.+++++| ++++++++++++.++++.|.+++.+.+||+|++ ++++|+|++.|++..+..
T Consensus 106 ~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~-----g~lvGiit~~Dil~~l~~ 164 (172)
T 3lhh_A 106 RLELVDLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEY-----GDLKGLVTLQDMMDALTG 164 (172)
T ss_dssp CCCGGGGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTT-----SCEEEEEEHHHHHHHHHT
T ss_pred cccHHHHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCC-----CCEEEEeeHHHHHHHHhC
Confidence 56799999 889999999999999999999999999999987 899999999999988764
No 115
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=97.66 E-value=2.3e-05 Score=74.79 Aligned_cols=60 Identities=17% Similarity=0.216 Sum_probs=52.2
Q ss_pred ccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcchhh
Q 003885 717 VDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHV 777 (789)
Q Consensus 717 ~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~~~ 777 (789)
..++++|++++.++.+++++.+|.++|.+.+.+++||+|+ .++++++|+||++|+.+...
T Consensus 13 ~~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~-~~~~~~~Givt~~dl~~~~~ 72 (164)
T 2pfi_A 13 VRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVES-TESQILVGIVQRAQLVQALQ 72 (164)
T ss_dssp CBHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESC-TTTCBEEEEEEHHHHHHHHH
T ss_pred CCHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEec-CCCCEEEEEEEHHHHHHHHH
Confidence 4567899999999999999999999999999999999983 11578999999999987553
No 116
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=97.66 E-value=1.8e-05 Score=77.19 Aligned_cols=59 Identities=15% Similarity=0.212 Sum_probs=52.2
Q ss_pred cccccccccCC----Ceee--cCCCCHHHHHHHHHHcCCCeEEEe--eCCCCCCCEEEEEecccCcchhh
Q 003885 716 FVDLHPITNTS----PYTV--VETMSLAKAAVLFRQLALRHLCVV--PKTPGRPPIVGILTRHDFMPEHV 777 (789)
Q Consensus 716 ~~dL~~im~~~----p~tV--~~~~sL~~a~~lf~~~glr~LpVV--d~~~~~~~vvGIITr~DLl~~~~ 777 (789)
...++++|++. +.++ .+++++.+|.++|++.+.+++||+ |+ +++++|+||++|+++...
T Consensus 10 ~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~---~~~lvGiit~~dl~~~~~ 76 (185)
T 2j9l_A 10 KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRE---SQRLVGFVLRRDLIISIE 76 (185)
T ss_dssp CCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTT---TCBEEEEEEHHHHHHHHH
T ss_pred cCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECC---CCeEEEEEEHHHHHHHHH
Confidence 45677888877 7888 999999999999999999999999 66 789999999999997654
No 117
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=97.66 E-value=4.1e-05 Score=71.21 Aligned_cols=54 Identities=9% Similarity=0.060 Sum_probs=49.6
Q ss_pred cccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcchhhh
Q 003885 722 ITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHVL 778 (789)
Q Consensus 722 im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~~~~~ 778 (789)
+|.+++.++.+++++.+|+++|.+.+.+++||+|+ +++++|+||++|+++....
T Consensus 16 ~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~~~~Givt~~dl~~~~~~ 69 (144)
T 2nyc_A 16 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE---NGYLINVYEAYDVLGLIKG 69 (144)
T ss_dssp CBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TCBEEEEEEHHHHHHHHHT
T ss_pred CCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcC---CCcEEEEEcHHHHHHHhcc
Confidence 78888999999999999999999999999999997 7899999999999876543
No 118
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=97.62 E-value=5.3e-05 Score=69.80 Aligned_cols=59 Identities=14% Similarity=0.138 Sum_probs=52.6
Q ss_pred ccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhc
Q 003885 605 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 669 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~ 669 (789)
..+++++| +++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|++..+..
T Consensus 69 ~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~-----g~lvGiit~~Dil~~l~g 127 (130)
T 3hf7_A 69 KEIMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEY-----GDIQGLVTVEDILEEIVG 127 (130)
T ss_dssp HHHHHHHS-BCCCEEETTCBHHHHHHHHHHHCCCEEEEECTT-----SCEEEEEEHHHHHHHHHC
T ss_pred hhhHHHhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCC-----CCEEEEeeHHHHHHHHhC
Confidence 35688999 677899999999999999999999999999987 899999999999887653
No 119
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=97.61 E-value=6.4e-05 Score=71.37 Aligned_cols=60 Identities=17% Similarity=0.242 Sum_probs=55.7
Q ss_pred cccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhc
Q 003885 604 KNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 669 (789)
Q Consensus 604 ~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~ 669 (789)
.+.+++|+|.+++.++++++++.++++.|.+++++.+||+| + ++++|+|+++|++..+.+
T Consensus 76 ~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~-----g~~~Giit~~dil~~l~~ 135 (157)
T 4fry_A 76 KATRVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD-G-----GKLIGLISIGDLVKSVIA 135 (157)
T ss_dssp SSCBHHHHSBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-T-----TEEEEEEEHHHHHHHHHT
T ss_pred cccCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE-C-----CEEEEEEEHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999 4 899999999999998865
No 120
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=97.60 E-value=4.4e-05 Score=74.35 Aligned_cols=58 Identities=16% Similarity=0.101 Sum_probs=51.4
Q ss_pred cccccccc--CCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCC-CCEEEEEecccCcchhh
Q 003885 717 VDLHPITN--TSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGR-PPIVGILTRHDFMPEHV 777 (789)
Q Consensus 717 ~dL~~im~--~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~-~~vvGIITr~DLl~~~~ 777 (789)
..++++|. ++++++++++++.+|+++|++.+.+++||+|+ + ++++|+||.+|+++...
T Consensus 36 ~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~---~~~~lvGivt~~Dl~~~~~ 96 (173)
T 3ocm_A 36 RSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRG---SLDEVVGIGRAKDLVADLI 96 (173)
T ss_dssp SCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESS---STTSEEEEEEHHHHHHHHH
T ss_pred CCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeC---CCCCEEEEEEHHHHHHHHh
Confidence 45788996 46789999999999999999999999999986 5 79999999999997653
No 121
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=97.58 E-value=7.7e-05 Score=70.53 Aligned_cols=58 Identities=19% Similarity=0.214 Sum_probs=52.1
Q ss_pred cceeeccc------CCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHh
Q 003885 606 LVASDVVS------GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLK 668 (789)
Q Consensus 606 l~v~dvM~------~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~ 668 (789)
.+++|+|. +++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|++..+.
T Consensus 87 ~~v~~~m~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----g~~vGiit~~dil~~l~ 150 (152)
T 2uv4_A 87 VSVTKALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDEN-----DVVKGIVSLSDILQALV 150 (152)
T ss_dssp SBGGGGGGTCCHHHHTCSEECTTSBHHHHHHHHHHHTCSEEEEECTT-----SBEEEEEEHHHHHHHHC
T ss_pred chHHHHHhhhhcccCCCeEECCCCcHHHHHHHHHHcCCeEEEEECCC-----CeEEEEEEHHHHHHHHH
Confidence 45777775 788999999999999999999999999999986 89999999999988764
No 122
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=97.39 E-value=8.4e-05 Score=85.49 Aligned_cols=60 Identities=13% Similarity=0.319 Sum_probs=54.4
Q ss_pred ccccccccCCCeeecCC-CCHHHHHHHHHHcCCCeEEEee-CCCCCCCEEEEEecccCcchhhhc
Q 003885 717 VDLHPITNTSPYTVVET-MSLAKAAVLFRQLALRHLCVVP-KTPGRPPIVGILTRHDFMPEHVLG 779 (789)
Q Consensus 717 ~dL~~im~~~p~tV~~~-~sL~~a~~lf~~~glr~LpVVd-~~~~~~~vvGIITr~DLl~~~~~~ 779 (789)
..++++|+++++++.++ +++.+|+++|++.+++++||+| + +++++||||++||++....+
T Consensus 384 ~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~---~g~lvGiVt~~Dll~~l~~~ 445 (527)
T 3pc3_A 384 LAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQD---DGSVLGVVGQETLITQIVSM 445 (527)
T ss_dssp SBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTT---TCCEEEEEEHHHHHHHHHHH
T ss_pred CcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECC---CCEEEEEEEHHHHHHHHHhc
Confidence 46788999999999999 9999999999999999999999 6 68999999999999766543
No 123
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=97.34 E-value=0.00018 Score=75.50 Aligned_cols=60 Identities=15% Similarity=0.249 Sum_probs=54.6
Q ss_pred ccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhc
Q 003885 605 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 669 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~ 669 (789)
+.+++++|+++++++++++++.++++.|.+++.+.+||||++ ++++|+|+.+|++..+..
T Consensus 198 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----g~lvGivT~~Dil~~i~~ 257 (278)
T 2yvy_A 198 RTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEE-----GRLVGIVTVDDVLDVLEA 257 (278)
T ss_dssp TCBSTTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-----SBEEEEEEHHHHHHHC--
T ss_pred CCcHHHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCC-----CeEEEEEEHHHHHHHHHH
Confidence 568999999999999999999999999999999999999987 899999999999887654
No 124
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=97.28 E-value=0.00022 Score=75.27 Aligned_cols=60 Identities=15% Similarity=0.283 Sum_probs=55.7
Q ss_pred ccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhc
Q 003885 605 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 669 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~ 669 (789)
+.+++++|.++++++++++++.++.+.|.+++.+.+||||++ ++++|+|+++|++..+..
T Consensus 200 ~~~v~~im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~-----g~lvGiIT~~Dil~~i~~ 259 (286)
T 2oux_A 200 DTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYD-----DHLLGIVTVDDIIDVIDD 259 (286)
T ss_dssp TSBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-----CBEEEEEEHHHHHHHHHH
T ss_pred CCcHHHHcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCC-----CeEEEEEEHHHHHHHHHH
Confidence 567899999999999999999999999999999999999987 899999999999988764
No 125
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=97.15 E-value=0.00043 Score=78.44 Aligned_cols=61 Identities=15% Similarity=0.242 Sum_probs=56.5
Q ss_pred cccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhc
Q 003885 604 KNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 669 (789)
Q Consensus 604 ~~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~ 669 (789)
.+.+++|+|+++++++++++++.++.+.|++++.+.+||||++ ++++|+|+.+|+++.+..
T Consensus 217 ~~~~v~dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~-----g~lvGiIT~~Dil~~i~~ 277 (473)
T 2zy9_A 217 PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEE-----GRLVGIVTVDDVLDVLEA 277 (473)
T ss_dssp TTSBGGGTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECTT-----SBEEEEEEHHHHHHHHHH
T ss_pred CCCcHHHHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCC-----CEEEEEEehHhhHHHHHH
Confidence 3568999999999999999999999999999999999999987 899999999999988754
No 126
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=97.15 E-value=0.001 Score=75.83 Aligned_cols=61 Identities=20% Similarity=0.230 Sum_probs=56.3
Q ss_pred cccceeecccC-CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhc
Q 003885 604 KNLVASDVVSG-PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 669 (789)
Q Consensus 604 ~~l~v~dvM~~-~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~ 669 (789)
.+.+++|+|++ +++++++++++.++.+.|.+++.+.+||||++ ++++|+|+++|+++.+..
T Consensus 173 ~~~~V~~vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~-----g~l~GiIT~~Dil~~~~~ 234 (511)
T 3usb_A 173 YSIKISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNN-----GVLQGLITIKDIEKVIEF 234 (511)
T ss_dssp SSSBHHHHCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTT-----SBEEEEEEHHHHHHHHHC
T ss_pred CCCcHHHhcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCC-----CCEeeeccHHHHHHhhhc
Confidence 35678999998 99999999999999999999999999999987 999999999999888764
No 127
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=97.07 E-value=0.0003 Score=80.35 Aligned_cols=60 Identities=20% Similarity=0.210 Sum_probs=0.0
Q ss_pred cccceeecccCC--eEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHh
Q 003885 604 KNLVASDVVSGP--LITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLK 668 (789)
Q Consensus 604 ~~l~v~dvM~~~--vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~ 668 (789)
.+.+++|+|+++ ++++++++++.++++.|.+++++.+||||++ ++++|+|+++|+++.+.
T Consensus 159 ~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~-----g~lvGiIT~~Dil~~~~ 220 (503)
T 1me8_A 159 TETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDD-----QHLRYIVFRKDYDRSQV 220 (503)
T ss_dssp -------------------------------------------------------------------
T ss_pred ccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCC-----CeEEEEEEecHHHHhhh
Confidence 356899999987 9999999999999999999999999999987 89999999999977654
No 128
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=96.65 E-value=0.00083 Score=76.41 Aligned_cols=53 Identities=25% Similarity=0.241 Sum_probs=47.7
Q ss_pred cccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCc
Q 003885 718 DLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 773 (789)
Q Consensus 718 dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl 773 (789)
..+++|.++|+++.+++++.++.++|++.+.+++||+|+ +++++||||++|+.
T Consensus 90 ~~~~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~---~~~lvGiVt~rDL~ 142 (496)
T 4fxs_A 90 IFEAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTE---NNELVGIITGRDVR 142 (496)
T ss_dssp HCCC--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECS---SSBEEEEEEHHHHT
T ss_pred ccccccccCceEECCCCCHHHHHHHHHHcCCcEEEEEcc---CCEEEEEEEHHHHh
Confidence 446788899999999999999999999999999999997 78999999999997
No 129
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=96.42 E-value=0.00053 Score=78.11 Aligned_cols=55 Identities=25% Similarity=0.257 Sum_probs=1.6
Q ss_pred ccccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 717 VDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 717 ~dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
.+++++|.+++++|++++++.+++++|++.+.+.+||+|+ +++++|+||++|+.+
T Consensus 95 ~~~~~iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~---~~~lvGivt~~Dl~~ 149 (494)
T 1vrd_A 95 KKTENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDE---EGRLVGLLTNRDVRF 149 (494)
T ss_dssp HTC-------------------------------------------------------
T ss_pred hhHhhcCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcC---CCEEEEEEEHHHHHh
Confidence 4567789999999999999999999999999999999997 789999999999975
No 130
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=96.37 E-value=0.0038 Score=70.93 Aligned_cols=60 Identities=18% Similarity=0.238 Sum_probs=55.9
Q ss_pred ccceeecccC-CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhc
Q 003885 605 NLVASDVVSG-PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 669 (789)
Q Consensus 605 ~l~v~dvM~~-~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~ 669 (789)
+.+++|+|++ +++++++++++.++++.|.+++.+.+||||++ ++++|+|+++|++..+..
T Consensus 151 ~~~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~-----g~lvGivt~~Dil~~~~~ 211 (491)
T 1zfj_A 151 NAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNS-----GRLSGLITIKDIEKVIEF 211 (491)
T ss_dssp SSBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTT-----SBEEEEEEHHHHHHHHHC
T ss_pred CCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----CcEEEEEEHHHHHHHHhc
Confidence 5678999998 89999999999999999999999999999987 899999999999998874
No 131
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=96.22 E-value=0.00075 Score=75.71 Aligned_cols=58 Identities=26% Similarity=0.286 Sum_probs=0.0
Q ss_pred ccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHH
Q 003885 605 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLL 667 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL 667 (789)
+.+++|+|+++++++++..+++++.++|.+++...+||||++ ++|+|+|+++|+.+.-
T Consensus 199 ~~~V~evMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~-----g~LvGlIT~kDi~k~~ 256 (556)
T 4af0_A 199 ETPIKSVMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDSN-----GHLVSLVARSDLLKNQ 256 (556)
T ss_dssp ---------------------------------------------------------------
T ss_pred ceEhhhhcccceEEecCCCCHHHHHHHHHHccccceeEEccC-----CcEEEEEEechhhhhh
Confidence 468999999999999999999999999999999999999998 9999999999996543
No 132
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=96.02 E-value=0.0027 Score=72.12 Aligned_cols=58 Identities=22% Similarity=0.351 Sum_probs=0.0
Q ss_pred ccceeecccCCeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHH
Q 003885 605 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLL 667 (789)
Q Consensus 605 ~l~v~dvM~~~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL 667 (789)
+.+++|+|+++++++++++++.++++.|.+++.+.+||||++ ++++|+|+++|++..+
T Consensus 149 ~~~v~~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~-----g~lvGiiT~~Dil~~~ 206 (486)
T 2cu0_A 149 GKLVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDER-----GKLVGLITMSDLVARK 206 (486)
T ss_dssp ---------------------------------------------------------------
T ss_pred CCCHHHHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEecC-----CeEEEEEEHHHHHHhh
Confidence 568999999999999999999999999999999999999987 8999999999997764
No 133
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=95.79 E-value=0.002 Score=73.74 Aligned_cols=57 Identities=12% Similarity=0.105 Sum_probs=28.3
Q ss_pred cccccccCCCeeecCCCCHHHHHHHHHHcCCCeEEEeeCCCCCCCEEEEEecccCcc
Q 003885 718 DLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 774 (789)
Q Consensus 718 dL~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~~~vvGIITr~DLl~ 774 (789)
.+.++|.++|+++++++++.++.++|++.+.+.+||+|+...+++++|+||++|+..
T Consensus 109 ~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~ 165 (514)
T 1jcn_A 109 NFEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDF 165 (514)
T ss_dssp TCCTTSCSSCCCCCC-----------------CEESCC--------CCEECTTTTC-
T ss_pred hhhhccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHh
Confidence 456788889999999999999999999999999999985111378999999999976
No 134
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=95.70 E-value=0.0018 Score=73.53 Aligned_cols=61 Identities=18% Similarity=0.095 Sum_probs=0.4
Q ss_pred cccceeeccc-C-CeEEecCCCcHHHHHHHHhhcCCCeeEEeeCCCCCCCCeEEEEEehHHHHHHHhc
Q 003885 604 KNLVASDVVS-G-PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 669 (789)
Q Consensus 604 ~~l~v~dvM~-~-~vvtv~~~~~V~~~~~~L~~~~~~~fPVVd~~~~~~~~~l~GlI~r~dLl~lL~~ 669 (789)
.+.+++|+|+ + +++++++++++.++.+.|.+++.+.+||||++ ++++|+|+++|+++..+.
T Consensus 145 ~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~-----g~lvGiIT~~Dil~~~~~ 207 (490)
T 4avf_A 145 AGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDEN-----FYLRGLVTFRDIEKAKTY 207 (490)
T ss_dssp -------------------------------------------------------------------C
T ss_pred cCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----CcEEEEEehHHhhhhccC
Confidence 3568999999 4 69999999999999999999999999999987 899999999999877643
No 135
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=30.93 E-value=20 Score=24.72 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=18.3
Q ss_pred hhhhHHHhhhhhhhhhhccCcchh
Q 003885 258 DRRDLITCGAAAGVAGAFRAPVGG 281 (789)
Q Consensus 258 ~~r~lv~~GaAAGvaaaF~APigG 281 (789)
.||+|+-..++++.+++.+.++.+
T Consensus 4 sRR~FLK~~aaa~Aaaaag~~~~~ 27 (35)
T 2pq4_B 4 SRRSFMKANAVAAAAAAAGLSVPG 27 (35)
T ss_dssp CSHHHHHHHHHHHHHHHHCCCCSS
T ss_pred cHHHHHHHHHHHHHHHHhcccchh
Confidence 589999888877777777776654
No 136
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=27.03 E-value=71 Score=23.19 Aligned_cols=22 Identities=41% Similarity=0.431 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003885 352 VIFLGVIGGIFGSFYNYLVDKV 373 (789)
Q Consensus 352 ~i~lGv~~Gl~g~lf~~~~~~~ 373 (789)
.+..|+++|+++.+..-+..++
T Consensus 11 aIA~gVVgGv~~v~ii~~~~~~ 32 (44)
T 2l2t_A 11 LIAAGVIGGLFILVIVGLTFAV 32 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEeehHHHHHHHHHHHHHHH
Confidence 4678888888887766554443
No 137
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=25.83 E-value=1.6e+02 Score=24.14 Aligned_cols=50 Identities=14% Similarity=0.051 Sum_probs=25.8
Q ss_pred CCcccchhhhhHHHHHh---hhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 003885 75 LDYEIVENELFKQDWRA---RRKVEIFQYVVFKWTLALLIGVL-TGLAAVFCNFF 125 (789)
Q Consensus 75 ldy~~~~~~~~~~~~~~---~~~~~~~~~~~~~w~~~~liGv~-~Gl~a~~~~~~ 125 (789)
+|+-.....-|.++|++ +.++ .-+..+.+...+..+|++ +|++++++...
T Consensus 18 ~~~~~e~~~~f~kd~~rvlk~~~K-Pdr~Ef~~iak~t~iG~~imG~IGfiIkLI 71 (80)
T 2ww9_B 18 VEKLVEAPVEFVREGTQFLAKCKK-PDLKEYTKIVKAVGIGFIAVGIIGYAIKLI 71 (80)
T ss_dssp ---CCHHHHHHHHHHHHHHHSCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34333333445556644 1111 122345666777778865 48888887543
No 138
>2kjf_A Carnocyclin-A; circular bacteriocin, antimicrobial peptide, solution helical, saposin-fold, antibiotic, antimicrobial, bacteriocin; NMR {Carnobacterium maltaromaticum}
Probab=20.98 E-value=72 Score=23.27 Aligned_cols=29 Identities=34% Similarity=0.524 Sum_probs=25.4
Q ss_pred HHhhhhhhhccccccCchhHHHHHHHHHH
Q 003885 205 IFGSIFGVAAGFVVGKEGPMVHTGACIAN 233 (789)
Q Consensus 205 ~~~~i~sv~sG~svG~EGP~vhiGa~igs 233 (789)
.+++++++.+|..+|..|-+...-++|+-
T Consensus 23 tvgsiisilggvtvglsgvftavkaaiak 51 (60)
T 2kjf_A 23 TVGSIISILGGVTVGLSGVFTAVKAAIAK 51 (60)
T ss_dssp CHHHHHHHHCSSCTTTHHHHHHHHHHHHH
T ss_pred hhhHHHHhhcCceechhhHHHHHHHHHHH
Confidence 56899999999999999999988887764
Done!