BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003886
(789 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
pdb|2QZP|B Chain B, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
Length = 562
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 82/190 (43%), Gaps = 14/190 (7%)
Query: 593 PLIVVLHGGPHXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
P +V++HGGP G+ +++ NYRGS G+GEE + G ++
Sbjct: 341 PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 400
Query: 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 712
DV A + GLA S++ ++G S+GG++T + P F A A
Sbjct: 401 EDVSAAARWARESGLA--SELYIMGYSYGGYMTLCALTMKPGLFKAGVA----------- 447
Query: 713 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLR 772
+ DW + +F E + S+SPI+H+ ++K P + D R
Sbjct: 448 -GASVVDWEEMYELSDAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNDSR 506
Query: 773 VPVSNGLQVI 782
P+ L+++
Sbjct: 507 TPLKPLLRLM 516
>pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE6|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE7|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|1VE7|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|2HU5|A Chain A, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU5|B Chain B, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU7|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU7|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|3O4G|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 82/190 (43%), Gaps = 14/190 (7%)
Query: 593 PLIVVLHGGPHXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
P +V++HGGP G+ +++ NYRGS G+GEE + G ++
Sbjct: 361 PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 420
Query: 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 712
DV A + GLA S++ ++G S+GG++T + P F A A
Sbjct: 421 EDVSAAARWARESGLA--SELYIMGYSYGGYMTLCALTMKPGLFKAGVA----------- 467
Query: 713 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLR 772
+ DW + +F E + S+SPI+H+ ++K P + D R
Sbjct: 468 -GASVVDWEEMYELSDAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNDSR 526
Query: 773 VPVSNGLQVI 782
P+ L+++
Sbjct: 527 TPLKPLLRLM 536
>pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU8|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
Length = 582
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 82/190 (43%), Gaps = 14/190 (7%)
Query: 593 PLIVVLHGGPHXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
P +V++HGGP G+ +++ NYRGS G+GEE + G ++
Sbjct: 361 PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 420
Query: 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 712
DV A + GLA S++ ++G ++GG++T + P F A A
Sbjct: 421 EDVSAAARWARESGLA--SELYIMGYAYGGYMTLCALTMKPGLFKAGVA----------- 467
Query: 713 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLR 772
+ DW + +F E + S+SPI+H+ ++K P + D R
Sbjct: 468 -GASVVDWEEMYELSDAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNDSR 526
Query: 773 VPVSNGLQVI 782
P+ L+++
Sbjct: 527 TPLKPLLRLM 536
>pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 82/190 (43%), Gaps = 14/190 (7%)
Query: 593 PLIVVLHGGPHXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
P +V++HGGP G+ +++ NYRGS G+GEE + G ++
Sbjct: 361 PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 420
Query: 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 712
DV A + GLA S++ ++G S+GG++T + P F A A
Sbjct: 421 EDVSAAARWARESGLA--SELYIMGYSYGGYMTLCALTMKPGLFKAGVA----------- 467
Query: 713 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLR 772
+ DW + +F E + S+SPI+H+ ++K P + + R
Sbjct: 468 -GASVVDWEEMYELSDAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNNSR 526
Query: 773 VPVSNGLQVI 782
P+ L+++
Sbjct: 527 TPLKPLLRLM 536
>pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 81/190 (42%), Gaps = 14/190 (7%)
Query: 593 PLIVVLHGGPHXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
P +V++HGGP G+ +++ NYRGS G+GEE + G ++
Sbjct: 361 PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 420
Query: 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 712
DV A + GLA S++ ++G S+GG++T + P F A A
Sbjct: 421 EDVSAAARWARESGLA--SELYIMGYSYGGYMTLCALTMKPGLFKAGVA----------- 467
Query: 713 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLR 772
+ DW + +F E + S+SPI+H+ ++K P + R
Sbjct: 468 -GASVVDWEEMYELSDAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNASR 526
Query: 773 VPVSNGLQVI 782
P+ L+++
Sbjct: 527 TPLKPLLRLM 536
>pdb|2QR5|A Chain A, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
pdb|2QR5|B Chain B, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
Length = 582
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 81/190 (42%), Gaps = 14/190 (7%)
Query: 593 PLIVVLHGGPHXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
P +V++ GGP G+ +++ NYRGS G+GEE + G ++
Sbjct: 361 PTVVLVAGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 420
Query: 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 712
DV A + GLA S++ ++G S+GG++T + P F A A
Sbjct: 421 EDVSAAARWARESGLA--SELYIMGYSYGGYMTLCALTMKPGLFKAGVA----------- 467
Query: 713 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLR 772
+ DW + +F E + S+SPI+H+ ++K P + D R
Sbjct: 468 -GASVVDWEEMYELSDAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNDSR 526
Query: 773 VPVSNGLQVI 782
P+ L+++
Sbjct: 527 TPLKPLLRLM 536
>pdb|3AZO|A Chain A, Crystal Structure Of Puromycin Hydrolase
pdb|3AZO|B Chain B, Crystal Structure Of Puromycin Hydrolase
Length = 662
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 74/182 (40%), Gaps = 9/182 (4%)
Query: 593 PLIVVLHGGPHXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
P +V HGGP G + VNY GS G+G + L G+ G DV
Sbjct: 425 PYVVXAHGGPTSRVPAVLDLDVAYFTSRGIGVADVNYGGSTGYGRAYRERLRGRWGVVDV 484
Query: 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 712
D + + G A+ +++ V GGS GG+ + + D + P+ +L +
Sbjct: 485 EDCAAVATALAEEGTADRARLAVRGGSAGGWTAASSL-VSTDVYACGTVLYPVLDL---L 540
Query: 713 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLR 772
G D + Y SF E P R+ ++P++ +V+ P + L G +D
Sbjct: 541 GWADGGTHDFESRYLDFLIGSFEEFPE-----RYRDRAPLTRADRVRVPFLLLQGLEDPV 595
Query: 773 VP 774
P
Sbjct: 596 CP 597
>pdb|2Z3W|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a
pdb|2Z3Z|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a Complexd
With An Inhibitor
Length = 706
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 104/271 (38%), Gaps = 39/271 (14%)
Query: 478 GELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSP 537
G+ +TP ES + L+ DG II + SP +V V KG+ + L
Sbjct: 392 GKTKDLTP-ESGMHRTQLSPDGSAIIDIFQSPTVPRKVT----VTNIGKGSHTLLE---- 442
Query: 538 ISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVV 597
++ P+ ++ R +IM Q P H P+IV
Sbjct: 443 -AKNPDTGYAMPEIRTGTIM-----------AADGQTPLYYKLTMPLHFDPAKKYPVIVY 490
Query: 598 LHGGPHXXXXXXXXXXXXXXXXV-----GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
++GGPH + GY++ V+ RGS G Q + ++G ++
Sbjct: 491 VYGGPHAQLVTKTWRSSVGGWDIYMAQKGYAVFTVDSRGSANRGAAFEQVIHRRLGQTEM 550
Query: 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 712
D + +D + + ++ V G S+GGF+TT+L+ D F A P+
Sbjct: 551 ADQMCGVDFLKSQSWVDADRIGVHGWSYGGFMTTNLMLTHGDVFKVGVAGGPVI------ 604
Query: 713 GTTDIPDWC-YVESYGSKGKDSFTESPSVED 742
DW Y YG + D+ E+P D
Sbjct: 605 ------DWNRYAIMYGERYFDAPQENPEGYD 629
>pdb|2D5L|A Chain A, Crystal Structure Of Prolyl Tripeptidyl Aminopeptidase
From Porphyromonas Gingivalis
pdb|2EEP|A Chain A, Prolyl Tripeptidyl Aminopeptidase Complexed With An
Inhibitor
Length = 706
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 104/271 (38%), Gaps = 39/271 (14%)
Query: 478 GELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSP 537
G+ +TP ES + L+ DG II + SP +V V KG+ + L
Sbjct: 392 GKTKDLTP-ESGMHRTQLSPDGSAIIDIFQSPTVPRKVT----VTNIGKGSHTLLE---- 442
Query: 538 ISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVV 597
++ P+ ++ R +IM Q P H P+IV
Sbjct: 443 -AKNPDTGYAMPEIRTGTIM-----------AADGQTPLYYKLTMPLHFDPAKKYPVIVY 490
Query: 598 LHGGPHXXXXXXXXXXXXXXXXV-----GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
++GGPH + GY++ V+ RGS G Q + ++G ++
Sbjct: 491 VYGGPHAQLVTKTWRSSVGGWDIYMAQKGYAVFTVDSRGSANRGAAFEQVIHRRLGQTEM 550
Query: 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 712
D + +D + + ++ V G S+GGF+TT+L+ D F A P+
Sbjct: 551 ADQMCGVDFLKSQSWVDADRIGVHGWSYGGFMTTNLMLTHGDVFKVGVAGGPVI------ 604
Query: 713 GTTDIPDWCYVE-SYGSKGKDSFTESPSVED 742
DW E YG + D+ E+P D
Sbjct: 605 ------DWNRYEIMYGERYFDAPQENPEGYD 629
>pdb|2DCM|A Chain A, The Crystal Structure Of S603a Mutated Prolyl Tripeptidyl
Aminopeptidase Complexed With Substrate
Length = 706
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 104/271 (38%), Gaps = 39/271 (14%)
Query: 478 GELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSP 537
G+ +TP ES + L+ DG II + SP +V V KG+ + L
Sbjct: 392 GKTKDLTP-ESGMHRTQLSPDGSAIIDIFQSPTVPRKVT----VTNIGKGSHTLLE---- 442
Query: 538 ISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVV 597
++ P+ ++ R +IM Q P H P+IV
Sbjct: 443 -AKNPDTGYAMPEIRTGTIM-----------AADGQTPLYYKLTMPLHFDPAKKYPVIVY 490
Query: 598 LHGGPHXXXXXXXXXXXXXXXXV-----GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
++GGPH + GY++ V+ RGS G Q + ++G ++
Sbjct: 491 VYGGPHAQLVTKTWRSSVGGWDIYMAQKGYAVFTVDSRGSANRGAAFEQVIHRRLGQTEM 550
Query: 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 712
D + +D + + ++ V G ++GGF+TT+L+ D F A P+
Sbjct: 551 ADQMCGVDFLKSQSWVDADRIGVHGWAYGGFMTTNLMLTHGDVFKVGVAGGPVI------ 604
Query: 713 GTTDIPDWCYVE-SYGSKGKDSFTESPSVED 742
DW E YG + D+ E+P D
Sbjct: 605 ------DWNRYEIMYGERYFDAPQENPEGYD 629
>pdb|2ECF|A Chain A, Crystal Structure Of Dipeptidyl Aminopeptidase Iv From
Stenotrophomonas Maltophilia
Length = 741
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 621 GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSH 680
GY + ++ RG+ G + +L GK G+ +V D L + + +P+++ V G S+
Sbjct: 552 GYVVFSLDNRGTPRRGRDFGGALYGKQGTVEVADQLRGVAWLKQQPWVDPARIGVQGWSN 611
Query: 681 GGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSV 740
GG++T L+ +A D + A P+ + L Y S + + + P+
Sbjct: 612 GGYMTLMLLAKASDSYACGVAGAPVTDWGL---------------YDSHYTERYMDLPAR 656
Query: 741 EDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSN 777
D + ++HI +++P + + G D V +N
Sbjct: 657 NDAG-YREARVLTHIEGLRSPLLLIHGMADDNVLFTN 692
>pdb|1Z68|A Chain A, Crystal Structure Of Human Fibroblast Activation Protein
Alpha
pdb|1Z68|B Chain B, Crystal Structure Of Human Fibroblast Activation Protein
Alpha
Length = 719
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 79/194 (40%), Gaps = 20/194 (10%)
Query: 593 PLIVVLHGGPHXXXXXXXXXX---XXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649
PL++ ++GGP G + +V+ RG+ G++ L ++ K+G
Sbjct: 497 PLLIQVYGGPCSQSVRSVFAVNWISYLASKEGMVIALVDGRGTAFQGDKLLYAVYRKLGV 556
Query: 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 709
+V D +TA+ I+MG + ++ + G S+GG++++ + F A P
Sbjct: 557 YEVEDQITAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIAVAP----- 611
Query: 710 LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLL--G 767
+ W E Y S + F P+ +D + S + ++ +LL G
Sbjct: 612 -------VSSW---EYYASVYTERFMGLPTKDDNLEHYKNSTVMARAEYFRNVDYLLIHG 661
Query: 768 AQDLRVPVSNGLQV 781
D V N Q+
Sbjct: 662 TADDNVHFQNSAQI 675
>pdb|2BKL|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
pdb|2BKL|B Chain B, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 695
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 81/200 (40%), Gaps = 27/200 (13%)
Query: 585 HKKDCSCD---PLIVVLHGGPHXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQ 641
H+KD D P ++ +GG + G + N RG +G+
Sbjct: 436 HRKDLKRDGNAPTLLYGYGGFNVNMEANFRSSILPWLDAGGVYAVANLRGGGEYGKAWHD 495
Query: 642 SLPGKVGSQD--VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAA 699
+ G++ + +D A ++++ P ++ + GGS+GG L + Q P+ + A
Sbjct: 496 A--GRLDKKQNVFDDFHAAAEYLVQQKYTQPKRLAIYGGSNGGLLVGAAMTQRPELYGAV 553
Query: 700 AARNPLCNLA----LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHI 755
PL ++ G T IP+ YG+ E P ED H+ SP H+
Sbjct: 554 VCAVPLLDMVRYHLFGSGRTWIPE------YGT------AEKP--EDFKTLHAYSPYHHV 599
Query: 756 S-KVKTPTIFLLGA-QDLRV 773
V+ P + ++ A D RV
Sbjct: 600 RPDVRYPALLMMAADHDDRV 619
>pdb|2GBC|A Chain A, Native Dpp-Iv (Cd26) From Rat
pdb|2GBC|B Chain B, Native Dpp-Iv (Cd26) From Rat
pdb|2GBF|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
pdb|2GBF|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
pdb|2GBG|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
pdb|2GBG|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
pdb|2GBI|A Chain A, Rat Dpp-Iv With Xanthine Inhibitor 4
pdb|2GBI|B Chain B, Rat Dpp-Iv With Xanthine Inhibitor 4
pdb|2I3Z|A Chain A, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
pdb|2I3Z|B Chain B, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
pdb|2OAE|A Chain A, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
Thiazole-Based Peptide Mimetic #31
pdb|2OAE|B Chain B, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
Thiazole-Based Peptide Mimetic #31
pdb|4FFV|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFV|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFW|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
pdb|4FFW|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
Length = 730
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 65/154 (42%), Gaps = 17/154 (11%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A + MG + +V + G S+GG++T+ ++
Sbjct: 545 RGSGYQGDKIMHAINKRLGTLEVEDQIEAARQFLKMGFVDSKRVAIWGWSYGGYVTSMVL 604
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 605 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 649
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQV 781
+ +S K L+ G D V Q+
Sbjct: 650 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQI 683
>pdb|3AZP|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant
pdb|3AZP|B Chain B, Crystal Structure Of Puromycin Hydrolase S511a Mutant
pdb|3AZQ|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant
Complexed With Pgg
pdb|3AZQ|B Chain B, Crystal Structure Of Puromycin Hydrolase S511a Mutant
Complexed With Pgg
Length = 662
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 73/183 (39%), Gaps = 11/183 (6%)
Query: 593 PLIVVLHGGPHXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
P +V+ HGGP G + VNY GS G+G + L G+ G DV
Sbjct: 425 PYVVMAHGGPTSRVPAVLDLDVAYFTSRGIGVADVNYGGSTGYGRAYRERLRGRWGVVDV 484
Query: 653 NDVLTAIDHVIDMGLANPSKVTV-VGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 711
D + + G A+ +++ V G + G + L+ D + P+ +L
Sbjct: 485 EDCAAVATALAEEGTADRARLAVRGGAAGGWTAASSLVST--DVYACGTVLYPVLDL--- 539
Query: 712 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 771
+G D + Y SF E P R+ ++P++ +V+ P + L G +D
Sbjct: 540 LGWADGGTHDFESRYLDFLIGSFEEFPE-----RYRDRAPLTRADRVRVPFLLLQGLEDP 594
Query: 772 RVP 774
P
Sbjct: 595 VCP 597
>pdb|4HVT|A Chain A, Structure Of A Post-Proline Cleaving Enzyme From
Rickettsia Typhi
Length = 711
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%)
Query: 625 LIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFL 684
++ N RG FG E +S G ND + +I + +P + + GGS+GG L
Sbjct: 512 VLANIRGGGEFGPEWHKSAQGIKRQTAFNDFFAVSEELIKQNITSPEYLGIKGGSNGGLL 571
Query: 685 TTHLIGQAPDKFVAAAARNPLCNL 708
+ + Q P+ F A A P+ ++
Sbjct: 572 VSVAMTQRPELFGAVACEVPILDM 595
>pdb|4A5S|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A Noval
Heterocyclic Dpp4 Inhibitor
pdb|4A5S|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A Noval
Heterocyclic Dpp4 Inhibitor
Length = 740
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 64/154 (41%), Gaps = 17/154 (11%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 543 RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVL 602
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 603 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 647
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQV 781
+ +S K L+ G D V Q+
Sbjct: 648 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQI 681
>pdb|3Q8W|A Chain A, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv
Complex
pdb|3Q8W|B Chain B, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv
Complex
Length = 732
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 64/154 (41%), Gaps = 17/154 (11%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 543 RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVL 602
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 603 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 647
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQV 781
+ +S K L+ G D V Q+
Sbjct: 648 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQI 681
>pdb|2G5P|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ac
pdb|2G5P|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ac
pdb|2G5T|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ag
pdb|2G5T|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ag
pdb|2G63|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2I03|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2OQV|A Chain A, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidine-
Constrained Phenethylamine
pdb|2OQV|B Chain B, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidine-
Constrained Phenethylamine
pdb|2I78|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2OAG|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
Length = 726
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 64/154 (41%), Gaps = 17/154 (11%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 543 RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVL 602
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 603 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 647
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQV 781
+ +S K L+ G D V Q+
Sbjct: 648 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQI 681
>pdb|1U8E|A Chain A, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F
pdb|1U8E|B Chain B, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F
Length = 728
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 64/154 (41%), Gaps = 17/154 (11%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 543 RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVL 602
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 603 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 647
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQV 781
+ +S K L+ G D V Q+
Sbjct: 648 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQI 681
>pdb|1X70|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino
Acid Inhibitor
pdb|1X70|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino
Acid Inhibitor
pdb|2FJP|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|2FJP|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|2HHA|A Chain A, The Structure Of Dpp4 In Complex With An Oxadiazole
Inhibitor
pdb|2HHA|B Chain B, The Structure Of Dpp4 In Complex With An Oxadiazole
Inhibitor
pdb|2IIT|A Chain A, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-one Inhibitor
pdb|2IIT|B Chain B, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-one Inhibitor
pdb|2IIV|A Chain A, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-One Inhibitor
pdb|2IIV|B Chain B, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-One Inhibitor
pdb|2OPH|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With An Alpha
Amino Acid Inhibitor
pdb|2OPH|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With An Alpha
Amino Acid Inhibitor
pdb|2P8S|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
CYCLOHEXALAMINE Inhibitor
pdb|2P8S|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
CYCLOHEXALAMINE Inhibitor
pdb|2QOE|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A
Triazolopiperazine- Based Beta Amino Acid Inhibitor
pdb|2QOE|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With A
Triazolopiperazine- Based Beta Amino Acid Inhibitor
pdb|3C43|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLOUROOLEFIN Inhibitor
pdb|3C43|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLOUROOLEFIN Inhibitor
pdb|3C45|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLUOROOLEFIN Inhibitor
pdb|3C45|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLUOROOLEFIN Inhibitor
pdb|3D4L|A Chain A, Human Dipeptidyl Peptidase Iv/cd26 In Complex With A Novel
Inhibitor
pdb|3D4L|B Chain B, Human Dipeptidyl Peptidase Iv/cd26 In Complex With A Novel
Inhibitor
pdb|2QKY|A Chain A, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|B Chain B, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|C Chain C, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|D Chain D, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|3HAB|A Chain A, The Structure Of Dpp4 In Complex With Piperidine Fused
Benzimidazole 25
pdb|3HAB|B Chain B, The Structure Of Dpp4 In Complex With Piperidine Fused
Benzimidazole 25
pdb|3HAC|A Chain A, The Structure Of Dpp-4 In Complex With Piperidine Fused
Imidazopyridine 34
pdb|3HAC|B Chain B, The Structure Of Dpp-4 In Complex With Piperidine Fused
Imidazopyridine 34
Length = 728
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 64/154 (41%), Gaps = 17/154 (11%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 543 RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVL 602
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 603 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 647
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQV 781
+ +S K L+ G D V Q+
Sbjct: 648 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQI 681
>pdb|1N1M|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|1N1M|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|1NU6|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv)
pdb|1NU6|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv)
pdb|1NU8|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv) In Complex With Diprotin A (Ili)
pdb|1NU8|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv) In Complex With Diprotin A (Ili)
pdb|1TK3|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase IvCD26
pdb|1TK3|B Chain B, Crystal Structure Of Human Apo Dipeptidyl Peptidase IvCD26
pdb|1TKR|A Chain A, Human Dipeptidyl Peptidase IvCD26 INHIBITED WITH
DIISOPROPYL Fluorophosphate
pdb|1TKR|B Chain B, Human Dipeptidyl Peptidase IvCD26 INHIBITED WITH
DIISOPROPYL Fluorophosphate
pdb|1W1I|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1RWQ|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With
5-Aminomethyl-6-(2,4-
Dichloro-Phenyl)-2-(3,
5-Dimethoxy-Phenyl)-Pyrimidin-4-Ylamine
pdb|1RWQ|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With
5-Aminomethyl-6-(2,4-
Dichloro-Phenyl)-2-(3,
5-Dimethoxy-Phenyl)-Pyrimidin-4-Ylamine
pdb|2BGN|A Chain A, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|B Chain B, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|C Chain C, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|D Chain D, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2AJL|I Chain I, X-Ray Structure Of Novel Biaryl-Based Dipeptidyl Peptidase
Iv Inhibitor
pdb|2AJL|J Chain J, X-Ray Structure Of Novel Biaryl-Based Dipeptidyl Peptidase
Iv Inhibitor
pdb|2BUB|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|2BUB|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|2OGZ|A Chain A, Crystal Structure Of Dpp-Iv Complexed With Lilly Aryl
Ketone Inhibitor
pdb|2OGZ|B Chain B, Crystal Structure Of Dpp-Iv Complexed With Lilly Aryl
Ketone Inhibitor
pdb|2OQI|A Chain A, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|B Chain B, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|C Chain C, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|D Chain D, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OLE|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complex With Cyclic Hydrazine Derivatives
pdb|2OLE|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complex With Cyclic Hydrazine Derivatives
pdb|3BJM|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With (1s,3s,
5s)-2-[(2s)-
2-Amino-2-(3-Hydroxytricyclo[3.3.1.13,7]dec-1-
Yl)acetyl]-2- Azabicyclo[3.1.0]hexane-3-Carbonitrile
(Cas), (1s,3s,5s)-2-((2s)-2-
Amino-2-(3-Hydroxyadamantan-1-
Yl)acetyl)-2-Azabicyclo[3.1.0]hexane- 3-Carbonitrile
(Iupac), Or Bms-477118
pdb|3BJM|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With (1s,3s,
5s)-2-[(2s)-
2-Amino-2-(3-Hydroxytricyclo[3.3.1.13,7]dec-1-
Yl)acetyl]-2- Azabicyclo[3.1.0]hexane-3-Carbonitrile
(Cas), (1s,3s,5s)-2-((2s)-2-
Amino-2-(3-Hydroxyadamantan-1-
Yl)acetyl)-2-Azabicyclo[3.1.0]hexane- 3-Carbonitrile
(Iupac), Or Bms-477118
pdb|3EIO|A Chain A, Crystal Structure Analysis Of Dppiv Inhibitor
pdb|3EIO|B Chain B, Crystal Structure Analysis Of Dppiv Inhibitor
pdb|3H0C|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|3H0C|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|3KWF|A Chain A, Human Dpp-Iv With Carmegliptin
(S)-1-((2s,3s,11bs)-2-Amino-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,1-
A]isoquinolin-3-Yl)-4-Fluoromethyl-Pyrrolidin-2-One
pdb|3KWF|B Chain B, Human Dpp-Iv With Carmegliptin
(S)-1-((2s,3s,11bs)-2-Amino-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,1-
A]isoquinolin-3-Yl)-4-Fluoromethyl-Pyrrolidin-2-One
pdb|3OC0|A Chain A, Structure Of Human Dpp-Iv With Hts Hit
(2s,3s,11bs)-3-Butyl-9,10-
Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3OC0|B Chain B, Structure Of Human Dpp-Iv With Hts Hit
(2s,3s,11bs)-3-Butyl-9,10-
Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3KWJ|A Chain A, Strucutre Of Human Dpp-Iv With
(2s,3s,11bs)-3-(3-Fluoromethyl-Phenyl)-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3KWJ|B Chain B, Strucutre Of Human Dpp-Iv With
(2s,3s,11bs)-3-(3-Fluoromethyl-Phenyl)-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|4DSA|A Chain A, Crystal Structure Of Dpp-iv With Compound C1
pdb|4DSA|B Chain B, Crystal Structure Of Dpp-iv With Compound C1
pdb|4DSZ|A Chain A, Crystal Structure Of Dpp-iv With Compound C2
pdb|4DSZ|B Chain B, Crystal Structure Of Dpp-iv With Compound C2
pdb|4DTC|A Chain A, Crystal Structure Of Dpp-iv With Compound C5
pdb|4DTC|B Chain B, Crystal Structure Of Dpp-iv With Compound C5
Length = 728
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 64/154 (41%), Gaps = 17/154 (11%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 543 RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVL 602
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 603 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 647
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQV 781
+ +S K L+ G D V Q+
Sbjct: 648 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQI 681
>pdb|2RGU|A Chain A, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor
pdb|2RGU|B Chain B, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor
Length = 734
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 64/154 (41%), Gaps = 17/154 (11%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 543 RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVL 602
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 603 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 647
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQV 781
+ +S K L+ G D V Q+
Sbjct: 648 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQI 681
>pdb|2RIP|A Chain A, Structure Of Dppiv In Complex With An Inhibitor
Length = 729
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 64/154 (41%), Gaps = 17/154 (11%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 544 RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVL 603
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 604 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 648
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQV 781
+ +S K L+ G D V Q+
Sbjct: 649 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQI 682
>pdb|1R9N|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
Length = 739
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 64/154 (41%), Gaps = 17/154 (11%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 554 RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVL 613
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 614 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 658
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQV 781
+ +S K L+ G D V Q+
Sbjct: 659 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQI 692
>pdb|2ONC|A Chain A, Crystal Structure Of Human Dpp-4
pdb|2ONC|B Chain B, Crystal Structure Of Human Dpp-4
pdb|2ONC|C Chain C, Crystal Structure Of Human Dpp-4
pdb|2ONC|D Chain D, Crystal Structure Of Human Dpp-4
Length = 731
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 64/154 (41%), Gaps = 17/154 (11%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 546 RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVL 605
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 606 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 650
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQV 781
+ +S K L+ G D V Q+
Sbjct: 651 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQI 684
>pdb|3CCB|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|C Chain C, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|D Chain D, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|C Chain C, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|D Chain D, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3G0B|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0C|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0D|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0G|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3O95|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O9V|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3OPM|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|4G1F|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
Length = 740
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 64/154 (41%), Gaps = 17/154 (11%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 555 RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVL 614
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 615 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 659
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQV 781
+ +S K L+ G D V Q+
Sbjct: 660 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQI 693
>pdb|2BGR|A Chain A, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides
Tat(1-9) Bound To The Active Site Of Dipeptidyl
Peptidase Iv (Cd26)
pdb|2BGR|B Chain B, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides
Tat(1-9) Bound To The Active Site Of Dipeptidyl
Peptidase Iv (Cd26)
Length = 738
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 64/154 (41%), Gaps = 17/154 (11%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 553 RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVL 612
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 613 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 657
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQV 781
+ +S K L+ G D V Q+
Sbjct: 658 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQI 691
>pdb|1J2E|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
pdb|1J2E|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
pdb|1WCY|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (dppiv)
Complex With Diprotin A
pdb|1WCY|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (dppiv)
Complex With Diprotin A
pdb|3VJM|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #1
pdb|3VJM|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #1
pdb|3VJK|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With Mp-513
pdb|3VJK|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With Mp-513
pdb|3VJL|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #2
pdb|3VJL|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #2
Length = 740
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 64/154 (41%), Gaps = 17/154 (11%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 549 RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVL 608
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 609 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 653
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQV 781
+ +S K L+ G D V Q+
Sbjct: 654 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQI 687
>pdb|1PFQ|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv /
Cd26
pdb|1PFQ|B Chain B, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv /
Cd26
Length = 731
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 64/154 (41%), Gaps = 17/154 (11%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 546 RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVL 605
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 606 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 650
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQV 781
+ +S K L+ G D V Q+
Sbjct: 651 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQI 684
>pdb|1R9M|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution
Length = 733
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 64/154 (41%), Gaps = 17/154 (11%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 548 RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVL 607
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 608 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 652
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQV 781
+ +S K L+ G D V Q+
Sbjct: 653 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQI 686
>pdb|2JID|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4-
Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine
pdb|2JID|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4-
Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine
Length = 736
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 64/154 (41%), Gaps = 17/154 (11%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 551 RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVL 610
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 611 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 655
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQV 781
+ +S K L+ G D V Q+
Sbjct: 656 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQI 689
>pdb|3NOX|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-(6-
(Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1,
2-A]pyrimidin- 2-Yl)(Morpholino)methanone
pdb|3NOX|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-(6-
(Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1,
2-A]pyrimidin- 2-Yl)(Morpholino)methanone
pdb|3SWW|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SWW|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SX4|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SX4|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3Q0T|A Chain A, Crystal Structure Of Human Dpp-iv In Complex Withsa-(+)-
Methyl2-(3-
(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-
7-oxo-5h-pyrrolo[3,4- B]pyridin-6(7h)-yl)acetate
pdb|3Q0T|B Chain B, Crystal Structure Of Human Dpp-iv In Complex Withsa-(+)-
Methyl2-(3-
(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-
7-oxo-5h-pyrrolo[3,4- B]pyridin-6(7h)-yl)acetate
Length = 753
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 64/154 (41%), Gaps = 17/154 (11%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 545 RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVL 604
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 605 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 649
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQV 781
+ +S K L+ G D V Q+
Sbjct: 650 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQI 683
>pdb|2QT9|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QT9|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
Length = 766
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 64/154 (41%), Gaps = 17/154 (11%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 581 RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVL 640
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 641 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 685
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQV 781
+ +S K L+ G D V Q+
Sbjct: 686 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQI 719
>pdb|3QBJ|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
pdb|3QBJ|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
Length = 748
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 64/154 (41%), Gaps = 17/154 (11%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 551 RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVL 610
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 611 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 655
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQV 781
+ +S K L+ G D V Q+
Sbjct: 656 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQI 689
>pdb|2QJR|A Chain A, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf
pdb|2QJR|B Chain B, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf
pdb|3F8S|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
pdb|3F8S|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
Length = 748
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 64/154 (41%), Gaps = 17/154 (11%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 551 RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVL 610
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 611 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 655
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQV 781
+ +S K L+ G D V Q+
Sbjct: 656 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQI 689
>pdb|1ORV|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORW|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|2BUA|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUC|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2AJ8|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJB|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJC|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJD|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
Length = 728
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 64/154 (41%), Gaps = 17/154 (11%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 543 RGSGYQGDKIMHAINRRLGTFEVEDQIEATRQFSKMGFVDDKRIAIWGWSYGGYVTSMVL 602
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 603 GAGSGVFKCGIAVAP------------VSKW---EYYDSVYTERYMGLPTPEDNLDYYRN 647
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQV 781
+ +S K L+ G D V Q+
Sbjct: 648 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQL 681
>pdb|1QFM|A Chain A, Prolyl Oligopeptidase From Porcine Muscle
Length = 710
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 16/176 (9%)
Query: 620 VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGS 679
+G L + N RG +GE + +D A +++I G +P ++T+ GGS
Sbjct: 495 MGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGS 554
Query: 680 HGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPS 739
+GG L Q PD F A+ VG D+ + + + G + S S
Sbjct: 555 NGGLLVATCANQRPDLFGCVIAQ---------VGVMDMLKF-HKYTIGHAWTTDYGXSDS 604
Query: 740 VEDLTRFHSKSPISHI-----SKVKTPTIFLLGA-QDLRVPVSNGLQVIYHIPFSV 789
+ SP+ ++ ++ P++ LL A D RV + L+ I + + V
Sbjct: 605 KQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIV 660
>pdb|4AX4|A Chain A, Prolyl Oligopeptidase From Porcine Brain, H680a Mutant
Length = 710
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 16/176 (9%)
Query: 620 VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGS 679
+G L + N RG +GE + +D A +++I G +P ++T+ GGS
Sbjct: 495 MGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGS 554
Query: 680 HGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPS 739
+GG L Q PD F A+ VG D+ + + + G + S S
Sbjct: 555 NGGLLVATCANQRPDLFGCVIAQ---------VGVMDMLKF-HKYTIGHAWTTDYGCSDS 604
Query: 740 VEDLTRFHSKSPISHI-----SKVKTPTIFLLGA-QDLRVPVSNGLQVIYHIPFSV 789
+ SP+ ++ ++ P++ LL A D RV + L+ I + + V
Sbjct: 605 KQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIV 660
>pdb|1VZ2|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y73c/v427c/c255t
Mutant
Length = 710
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 16/176 (9%)
Query: 620 VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGS 679
+G L + N RG +GE + +D A +++I G +P ++T+ GGS
Sbjct: 495 MGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGS 554
Query: 680 HGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPS 739
+GG L Q PD F A+ VG D+ + + + G + S S
Sbjct: 555 NGGLLVATCANQRPDLFGCVIAQ---------VGVMDMLKF-HKYTIGHAWTTDYGCSDS 604
Query: 740 VEDLTRFHSKSPISHI-----SKVKTPTIFLLGA-QDLRVPVSNGLQVIYHIPFSV 789
+ SP+ ++ ++ P++ LL A D RV + L+ I + + V
Sbjct: 605 KQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIV 660
>pdb|1QFS|A Chain A, Prolyl Oligopeptidase From Porcine Muscle With Covalently
Bound Inhibitor Z-Pro-Prolinal
pdb|1H2W|A Chain A, Prolyl Oligopeptidase From Porcine Brain
pdb|3EQ7|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ8|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ9|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|2XDW|A Chain A, Inhibition Of Prolyl Oligopeptidase With A Synthetic
Unnatural Dipeptide
pdb|4AMY|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-1
pdb|4AMZ|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-2
pdb|4AN0|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-3
pdb|4AN1|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-4
Length = 710
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 16/176 (9%)
Query: 620 VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGS 679
+G L + N RG +GE + +D A +++I G +P ++T+ GGS
Sbjct: 495 MGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGS 554
Query: 680 HGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPS 739
+GG L Q PD F A+ VG D+ + + + G + S S
Sbjct: 555 NGGLLVATCANQRPDLFGCVIAQ---------VGVMDMLKF-HKYTIGHAWTTDYGCSDS 604
Query: 740 VEDLTRFHSKSPISHI-----SKVKTPTIFLLGA-QDLRVPVSNGLQVIYHIPFSV 789
+ SP+ ++ ++ P++ LL A D RV + L+ I + + V
Sbjct: 605 KQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIV 660
>pdb|1E5T|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant
Length = 710
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 16/176 (9%)
Query: 620 VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGS 679
+G L + N RG +GE + +D A +++I G +P ++T+ GGS
Sbjct: 495 MGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGS 554
Query: 680 HGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPS 739
+GG L Q PD F A+ VG D+ + + + G + S S
Sbjct: 555 NGGLLVATCANQRPDLFGCVIAQ---------VGVMDMLKF-HKYTIGHAWTTDYGCSDS 604
Query: 740 VEDLTRFHSKSPISHI-----SKVKTPTIFLLGA-QDLRVPVSNGLQVIYHIPFSV 789
+ SP+ ++ ++ P++ LL A D RV + L+ I + + V
Sbjct: 605 KQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIV 660
>pdb|1H2X|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
pdb|1H2Y|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
With Covalently Bound Inhibitor Z-Pro-Prolinal
Length = 710
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 16/176 (9%)
Query: 620 VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGS 679
+G L + N RG +GE + +D A +++I G +P ++T+ GGS
Sbjct: 495 MGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGS 554
Query: 680 HGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPS 739
+GG L Q PD F A+ VG D+ + + + G + S S
Sbjct: 555 NGGLLVATCANQRPDLFGCVIAQ---------VGVMDMLKF-HKYTIGHAWTTDYGCSDS 604
Query: 740 VEDLTRFHSKSPISHI-----SKVKTPTIFLLGA-QDLRVPVSNGLQVIYHIPFSV 789
+ SP+ ++ ++ P++ LL A D RV + L+ I + + V
Sbjct: 605 KQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIV 660
>pdb|3DDU|A Chain A, Prolyl Oligopeptidase With Gsk552
Length = 709
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 16/176 (9%)
Query: 620 VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGS 679
+G L + N RG +GE + +D A +++I G +P ++T+ GGS
Sbjct: 494 MGGILAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGS 553
Query: 680 HGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPS 739
+GG L Q PD F A+ VG D+ + + + G + S S
Sbjct: 554 NGGLLVAACANQRPDLFGCVIAQ---------VGVMDMLKF-HKYTIGHAWTTDYGCSDS 603
Query: 740 VEDLTRFHSKSPISHI-----SKVKTPTIFLLGA-QDLRVPVSNGLQVIYHIPFSV 789
+ SP+ ++ ++ P++ LL A D RV + L+ I + + V
Sbjct: 604 KQHFEWLVKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIV 659
>pdb|1VZ3|A Chain A, Prolyl Oligopeptidase From Porcine Brain, T597c Mutant
Length = 710
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%)
Query: 620 VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGS 679
+G L + N RG +GE + +D A +++I G +P ++T+ GGS
Sbjct: 495 MGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGS 554
Query: 680 HGGFLTTHLIGQAPDKFVAAAAR 702
+GG L Q PD F A+
Sbjct: 555 NGGLLVATCANQRPDLFGCVIAQ 577
>pdb|1O6F|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%)
Query: 620 VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGS 679
+G L + N RG +GE + +D A +++I G +P ++T+ GGS
Sbjct: 495 MGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGS 554
Query: 680 HGGFLTTHLIGQAPDKFVAAAAR 702
+GG L Q PD F A+
Sbjct: 555 NGGLLVATCANQRPDLFGCVIAQ 577
>pdb|1O6G|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641n Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%)
Query: 620 VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGS 679
+G L + N RG +GE + +D A +++I G +P ++T+ GGS
Sbjct: 495 MGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGS 554
Query: 680 HGGFLTTHLIGQAPDKFVAAAAR 702
+GG L Q PD F A+
Sbjct: 555 NGGLLVATCANQRPDLFGCVIAQ 577
>pdb|1E8M|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Inhibitor
pdb|1E8N|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Peptide
pdb|1UOO|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Arg-Pro
pdb|1UOP|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Glu-Pro
pdb|1UOQ|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Glu-Phe-Ser-Pro
pdb|1H2Z|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 73/176 (41%), Gaps = 16/176 (9%)
Query: 620 VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGS 679
+G L + N RG +GE + +D A +++I G +P ++T+ GG+
Sbjct: 495 MGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGA 554
Query: 680 HGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPS 739
+GG L Q PD F A+ VG D+ + + + G + S S
Sbjct: 555 NGGLLVATCANQRPDLFGCVIAQ---------VGVMDMLKF-HKYTIGHAWTTDYGCSDS 604
Query: 740 VEDLTRFHSKSPISHI-----SKVKTPTIFLLGA-QDLRVPVSNGLQVIYHIPFSV 789
+ SP+ ++ ++ P++ LL A D RV + L+ I + + V
Sbjct: 605 KQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIV 660
>pdb|3VKF|A Chain A, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
pdb|3VKF|B Chain B, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
Length = 585
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 49/127 (38%), Gaps = 1/127 (0%)
Query: 557 MKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHXXXXXXXXXXXXX 616
+ +P + V + A+KP + I + P++V +HGG +
Sbjct: 114 IYVPTEDVKRISKECARKPGKKICRKGDIRDSGGPKPVMVYIHGGSYMEGTGNLYDGSVL 173
Query: 617 XXXVGYSLLIVNYR-GSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTV 675
++ VNYR G LGF Q+ G G D+ L I +P ++TV
Sbjct: 174 ASYGNVIVITVNYRLGVLGFLSTGDQAAKGNYGLLDLIQALRWTSENIGFFGGDPLRITV 233
Query: 676 VGGSHGG 682
G GG
Sbjct: 234 FGSGAGG 240
>pdb|2XE4|A Chain A, Structure Of Oligopeptidase B From Leishmania Major
Length = 751
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 16/126 (12%)
Query: 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 712
+D + A + +++ L PS++ G S GG L ++ PD F A A P ++ +
Sbjct: 571 SDFIAAAEFLVNAKLTTPSQLACEGRSAGGLLMGAVLNMRPDLFKVALAGVPFVDVMTTM 630
Query: 713 GTTDIP----DWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFL-LG 767
IP +W E +G+ + + + S SP+ ++ + P I + G
Sbjct: 631 CDPSIPLTTGEW---EEWGNPNEYKYYDY--------MLSYSPMDNVRAQEYPNIMVQCG 679
Query: 768 AQDLRV 773
D RV
Sbjct: 680 LHDPRV 685
>pdb|3TJT|A Chain A, Crystal Structure Analysis Of The Superoxide Dismutase
From Clostridium Difficile
Length = 208
Score = 34.7 bits (78), Expect = 0.21, Method: Composition-based stats.
Identities = 46/196 (23%), Positives = 82/196 (41%), Gaps = 16/196 (8%)
Query: 34 HTRFTVAKPAYFSYKRLSVFLAMDASKAAPAKQVSSVLDA--TAEEEYA-----SLSKLL 86
+ +F V KP ++Y L ++ + K K + +D A E+Y SL +LL
Sbjct: 3 NNKFKV-KPLPYAYDALEPYIDKETMKLHHDKHYQAYVDKLNAALEKYPELYNYSLCELL 61
Query: 87 QDFTNISSIDKAWTF--NSGNGNGTQAMFSISQP-NLLANKRKKFMLSTVISKENENSVT 143
Q+ ++ D A T N+G + F I P + ++ K + +
Sbjct: 62 QNLDSLPK-DIATTVRNNAGGAYNHKFFFDIMTPEKTIPSESLKEAIDRDFGSFEKFKQE 120
Query: 144 FQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQL---EKEFHVPQTV 200
FQ + V +G + +V + G KL ++ P +SP+ L L E +++
Sbjct: 121 FQKSALDVFGSGWAWLVATKDG-KLSIMTTPNQDSPVSKNLTPIIGLDVWEHAYYLKYQN 179
Query: 201 HGSVYADGWFEGISWN 216
+ Y D WF ++WN
Sbjct: 180 RRNEYIDNWFNVVNWN 195
>pdb|1YR2|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 741
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 621 GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV-NDVLTAIDHVIDMGLANPSKVTVVGGS 679
G + + N RG +G+ A + Q+V +D + A + +I G+ + + GGS
Sbjct: 517 GGAFALANLRGGGEYGD-AWHDAGRRDKKQNVFDDFIAAGEWLIANGVTPRHGLAIEGGS 575
Query: 680 HGGFLTTHLIGQAPDKFVAAA 700
+GG L + Q PD F AA+
Sbjct: 576 NGGLLIGAVTNQRPDLFAAAS 596
>pdb|3BE8|A Chain A, Crystal Structure Of The Synaptic Protein Neuroligin 4
pdb|3BE8|B Chain B, Crystal Structure Of The Synaptic Protein Neuroligin 4
pdb|2WQZ|A Chain A, Crystal Structure Of Synaptic Protein Neuroligin-4 In
Complex With Neurexin-beta 1: Alternative Refinement
pdb|2WQZ|B Chain B, Crystal Structure Of Synaptic Protein Neuroligin-4 In
Complex With Neurexin-beta 1: Alternative Refinement
pdb|2XB6|A Chain A, Revisited Crystal Structure Of Neurexin1beta-neuroligin4
Complex
pdb|2XB6|B Chain B, Revisited Crystal Structure Of Neurexin1beta-neuroligin4
Complex
Length = 588
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 1/94 (1%)
Query: 590 SCDPLIVVLHGGPHXXXXXXXXXXXXXXXXVGYSLLIVNYR-GSLGFGEEALQSLPGKVG 648
S P++V +HGG + ++ +NYR G LGF Q+ G G
Sbjct: 133 SKKPVMVYIHGGSYMEGTGNMIDGSILASYGNVIVITINYRLGILGFLSTGDQAAKGNYG 192
Query: 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGG 682
D L I+ + +P +VT+ G G
Sbjct: 193 LLDQIQALRWIEENVGAFGGDPKRVTIFGSGAGA 226
>pdb|3MUN|A Chain A, Appep_pepclose Closed State
pdb|3MUO|A Chain A, Appep_pepclose+pp Closed State
Length = 693
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 5/115 (4%)
Query: 584 SHKKDCSCD---PLIVVLHGGPHXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEAL 640
S++K D P I+ +GG +G + N RG +G+ A
Sbjct: 443 SYRKGLKLDGSNPTILYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGGGEYGQ-AW 501
Query: 641 QSLPGKVGSQDV-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 694
+ Q+V +D + A +++ G ++ + GGS+GG L ++ Q PD
Sbjct: 502 HLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPD 556
>pdb|2ZYS|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Chloride
Length = 479
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 638 EALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN--PSKVTVVGGSHGGFLTTHLIGQAPDK 695
E L + K + +++ + +D VID LA KV +VG S G F + +P++
Sbjct: 93 ETLDKILSKSRERLIDETFSRLDRVIDEALAESGADKVDLVGHSMGTFFLVRYVNSSPER 152
>pdb|2ZYR|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Magnesium
pdb|2ZYR|B Chain B, A. Fulgidus Lipase With Fatty Acid Fragment And Magnesium
Length = 484
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 638 EALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN--PSKVTVVGGSHGGFLTTHLIGQAPDK 695
E L + K + +++ + +D VID LA KV +VG S G F + +P++
Sbjct: 93 ETLDKILSKSRERLIDETFSRLDRVIDEALAESGADKVDLVGHSMGTFFLVRYVNSSPER 152
>pdb|2ZYI|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Calcium
pdb|2ZYI|B Chain B, A. Fulgidus Lipase With Fatty Acid Fragment And Calcium
Length = 475
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 638 EALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN--PSKVTVVGGSHGGFLTTHLIGQAPDK 695
E L + K + +++ + +D VID LA KV +VG S G F + +P++
Sbjct: 93 ETLDKILSKSRERLIDETFSRLDRVIDEALAESGADKVDLVGHSMGTFFLVRYVNSSPER 152
>pdb|2BCE|A Chain A, Cholesterol Esterase From Bos Taurus
Length = 579
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 624 LLIVNYR-GSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGG 682
++ NYR G LGF +LPG G D + + + I+ +P ++T+ G S GG
Sbjct: 138 VVTFNYRVGPLGFLSTGDSNLPGNYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGG 197
>pdb|3IUN|A Chain A, Appep_d622n Opened State
pdb|3IUQ|A Chain A, Appep_d622n+pp Closed State
pdb|3IUR|A Chain A, Appep_d266nx+h2h3 Opened State
Length = 693
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 5/115 (4%)
Query: 584 SHKKDCSCD---PLIVVLHGGPHXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEAL 640
S++K D P I+ +GG +G + N RG +G+ A
Sbjct: 443 SYRKGLKLDGSNPTILYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGGGEYGQ-AW 501
Query: 641 QSLPGKVGSQDV-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 694
+ Q+V +D + A +++ G ++ + GGS+GG L ++ Q PD
Sbjct: 502 HLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPD 556
>pdb|3KSR|A Chain A, Crystal Structure Of A Putative Serine Hydrolase (Xcc3885)
From Xanthomonas Campestris Pv. Campestris At 2.69 A
Resolution
Length = 290
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 30/50 (60%)
Query: 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVA 698
+Q+++D+ A D + + + + VVG S+GG+L+ L + P +++A
Sbjct: 79 AQNLDDIKAAYDQLASLPYVDAHSIAVVGLSYGGYLSALLTRERPVEWLA 128
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 10/68 (14%)
Query: 633 LGFGE-EALQSLPGKVGS---QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHL 688
+GFG+ E ++ PG + S V +L ++H G+ K +VG S GG +T L
Sbjct: 67 IGFGQSEYPETYPGHIMSWVGMRVEQILGLMNH---FGI---EKSHIVGNSMGGAVTLQL 120
Query: 689 IGQAPDKF 696
+ +AP++F
Sbjct: 121 VVEAPERF 128
>pdb|1JMY|A Chain A, Truncated Recombinant Human Bile Salt Stimulated Lipase
Length = 522
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 624 LLIVNYR-GSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGG 682
++ NYR G LGF +LPG G +D + + + I +P+ +T+ G S GG
Sbjct: 138 VVTFNYRVGPLGFLSTGDANLPGNYGLRDQHMAIAWVKRNIAAFGGDPNNITLFGESAGG 197
>pdb|1AQL|A Chain A, Crystal Structure Of Bovine Bile-Salt Activated Lipase
Complexed With Taurocholate
pdb|1AQL|B Chain B, Crystal Structure Of Bovine Bile-Salt Activated Lipase
Complexed With Taurocholate
Length = 532
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 624 LLIVNYR-GSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGG 682
++ NYR G LGF +LPG G D + + + I+ +P +T+ G S GG
Sbjct: 138 VVTFNYRVGPLGFLSTGDSNLPGNYGLWDQHMAIAWVKRNIEAFGGDPDNITLFGESAGG 197
>pdb|1AKN|A Chain A, Structure Of Bile-salt Activated Lipase
Length = 579
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 624 LLIVNYR-GSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGG 682
++ NYR G LGF +LPG G D + + + I+ +P +T+ G S GG
Sbjct: 138 VVTFNYRVGPLGFLSTGDSNLPGNYGLWDQHMAIAWVKRNIEAFGGDPDNITLFGESAGG 197
>pdb|1F6W|A Chain A, Structure Of The Catalytic Domain Of Human Bile Salt
Activated Lipase
Length = 533
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 624 LLIVNYR-GSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGG 682
++ NYR G LGF +LPG G +D + + + I +P +T+ G S GG
Sbjct: 138 VVTFNYRVGPLGFLSTGDANLPGNYGLRDQHMAIAWVKRNIAAFGGDPDNITLFGESAGG 197
>pdb|2XLB|A Chain A, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|B Chain B, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|C Chain C, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|D Chain D, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|E Chain E, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|F Chain F, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|G Chain G, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|H Chain H, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|I Chain I, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|J Chain J, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|K Chain K, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|L Chain L, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
Length = 320
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 49/132 (37%), Gaps = 3/132 (2%)
Query: 654 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG 713
D + A++ + + ++ V+GGS GG L + V A L N V
Sbjct: 156 DAVRALEVIQSFPEVDEHRIGVIGGSQGGALAIAAAALSDIPKVVVADYPYLSNFERAVD 215
Query: 714 TTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRV 773
+ + SY + D E + E L+ F I+ VK PT+ +G D
Sbjct: 216 VALEQPYLEINSYFRRNSDPEVEEKAFETLSYF---DLINLAGWVKQPTLMAIGLIDQVT 272
Query: 774 PVSNGLQVIYHI 785
P S H+
Sbjct: 273 PPSTVFAAYNHL 284
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|B Chain B, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|C Chain C, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|D Chain D, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
Length = 393
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 724 ESYGSKGKDSFTESPSVEDLTRFH-SKSPISHISKVKTPTIFLLGAQDLRVPV 775
E YG +G DS +E++ R S S I ++K+ T + L G+++L+ V
Sbjct: 71 EEYGGQGADSVATCIVIEEVARVDCSASLIPAVNKLGTMGLILRGSEELKKQV 123
>pdb|3FVR|A Chain A, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form I
pdb|3FVR|B Chain B, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form I
pdb|3FVR|C Chain C, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form I
pdb|3FVR|D Chain D, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form I
pdb|3FVR|E Chain E, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form I
pdb|3FVR|F Chain F, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form I
pdb|3FVR|G Chain G, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form I
pdb|3FVR|H Chain H, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form I
pdb|3FVR|I Chain I, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form I
pdb|3FVR|L Chain L, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form I
pdb|3FVR|M Chain M, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form I
pdb|3FVR|N Chain N, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form I
pdb|3FVT|A Chain A, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form Ii
pdb|3FVT|B Chain B, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form Ii
pdb|3FVT|C Chain C, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form Ii
pdb|3FVT|D Chain D, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form Ii
pdb|3FVT|E Chain E, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form Ii
pdb|3FVT|F Chain F, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form Ii
pdb|3FVT|G Chain G, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form Ii
pdb|3FVT|H Chain H, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form Ii
pdb|3FVT|I Chain I, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form Ii
pdb|3FVT|L Chain L, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form Ii
pdb|3FVT|M Chain M, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form Ii
pdb|3FVT|N Chain N, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form Ii
pdb|3FYU|C Chain C, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus Obtained In Presence Of D-Xylose And Sodium
Acetate
pdb|3FYU|E Chain E, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus Obtained In Presence Of D-Xylose And Sodium
Acetate
pdb|3FYU|F Chain F, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus Obtained In Presence Of D-Xylose And Sodium
Acetate
pdb|3FYU|G Chain G, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus Obtained In Presence Of D-Xylose And Sodium
Acetate
pdb|3FYU|L Chain L, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus Obtained In Presence Of D-Xylose And Sodium
Acetate
pdb|3FYU|M Chain M, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus Obtained In Presence Of D-Xylose And Sodium
Acetate
pdb|3FYU|N Chain N, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus Obtained In Presence Of D-Xylose And Sodium
Acetate
Length = 320
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 49/132 (37%), Gaps = 3/132 (2%)
Query: 654 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG 713
D + A++ + + ++ V+GGS GG L + V A L N V
Sbjct: 156 DAVRALEVIQSFPEVDEHRIGVIGGSQGGALAIAAAALSDIPKVVVADYPYLSNFERAVD 215
Query: 714 TTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRV 773
+ + SY + D E + E L+ F I+ VK PT+ +G D
Sbjct: 216 VALEQPYLEINSYFRRNSDPKVEEKAFETLSYF---DLINLAGWVKQPTLMAIGLIDKIT 272
Query: 774 PVSNGLQVIYHI 785
P S H+
Sbjct: 273 PPSTVFAAYNHL 284
>pdb|3IVM|A Chain A, Appep_wt+pp Closed State
Length = 693
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 5/115 (4%)
Query: 584 SHKKDCSCD---PLIVVLHGGPHXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEAL 640
S++K D P I+ +GG +G + N RG +G+ A
Sbjct: 443 SYRKGLKLDGSNPTILYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGGGEYGQ-AW 501
Query: 641 QSLPGKVGSQDV-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 694
+ Q+V +D + A +++ G ++ + GGS+GG L + Q PD
Sbjct: 502 HLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVXTQRPD 556
>pdb|2XLC|A Chain A, Acetyl Xylan Esterase From Bacillus Pumilus Cect5072 Bound
To Paraoxon
pdb|2XLC|B Chain B, Acetyl Xylan Esterase From Bacillus Pumilus Cect5072 Bound
To Paraoxon
pdb|2XLC|C Chain C, Acetyl Xylan Esterase From Bacillus Pumilus Cect5072 Bound
To Paraoxon
pdb|2XLC|D Chain D, Acetyl Xylan Esterase From Bacillus Pumilus Cect5072 Bound
To Paraoxon
pdb|2XLC|E Chain E, Acetyl Xylan Esterase From Bacillus Pumilus Cect5072 Bound
To Paraoxon
pdb|2XLC|F Chain F, Acetyl Xylan Esterase From Bacillus Pumilus Cect5072 Bound
To Paraoxon
Length = 320
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 49/132 (37%), Gaps = 3/132 (2%)
Query: 654 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG 713
D + A++ + + ++ V+GGS GG L + V A L N V
Sbjct: 156 DAVRALEVIQSFPEVDEHRIGVIGGSQGGALAIAAAALSDIPKVVVADYPYLSNFERAVD 215
Query: 714 TTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRV 773
+ + SY + D E + E L+ F I+ VK PT+ +G D
Sbjct: 216 VALEQPYLEINSYFRRNSDPEVEEKAFETLSYF---DLINLAGWVKQPTLXAIGLIDQVT 272
Query: 774 PVSNGLQVIYHI 785
P S H+
Sbjct: 273 PPSTVFAAYNHL 284
>pdb|3IUJ|A Chain A, Appep_wt2 Opened State
pdb|3IUL|A Chain A, Appep_wt1 Opened State
pdb|3IUM|A Chain A, Appep_wtx Opened State
Length = 693
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 5/115 (4%)
Query: 584 SHKKDCSCD---PLIVVLHGGPHXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEAL 640
S++K D P I+ +GG +G + N RG +G+ A
Sbjct: 443 SYRKGLKLDGSNPTILYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGGGEYGQ-AW 501
Query: 641 QSLPGKVGSQDV-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 694
+ Q+V +D + A +++ G ++ + GGS+GG L + Q PD
Sbjct: 502 HLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVXTQRPD 556
>pdb|3DFZ|A Chain A, Sirc, Precorrin-2 Dehydrogenase
pdb|3DFZ|B Chain B, Sirc, Precorrin-2 Dehydrogenase
Length = 223
Score = 30.0 bits (66), Expect = 5.9, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 9 VIATSDWCANQLLPRISPSFLSRHRHTRFT---VAKPAYFSYKRLSVFLAMDASKAAPAK 65
V+AT+D N+ + + + + + F+ + PA FS RLS+ ++ D + K
Sbjct: 96 VVATNDQAVNKFVKQHIKNDQLVNMASSFSDGNIQIPAQFSRGRLSLAISTDGASPLLTK 155
Query: 66 QVSSVLDATAEEEYASLSKLLQD 88
++ L + +E Y ++ L +
Sbjct: 156 RIKEDLSSNYDESYTQYTQFLYE 178
>pdb|4FBM|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBM|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 293
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 17/123 (13%)
Query: 675 VVGGSHGGFLTTHLIGQAPDKF-----VAAAARNPLCNLALMVGTTDIPDWCYVESYGSK 729
+ G S GG LT GQ P++F + AA R +LA + D P + GS
Sbjct: 122 MTGLSMGGALTVWAAGQFPERFAGIMPINAALRMESPDLAALAFNPDAP--AELPGIGSD 179
Query: 730 GKDS--------FTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQV 781
K T P+++ L + + + + +VK P + + +D VP NG ++
Sbjct: 180 IKAEGVKELAYPVTPVPAIKHLITIGAVAEML-LPRVKCPALIIQSREDHVVPPHNG-EL 237
Query: 782 IYH 784
IY+
Sbjct: 238 IYN 240
>pdb|4FBL|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|C Chain C, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|D Chain D, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 281
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 17/123 (13%)
Query: 675 VVGGSHGGFLTTHLIGQAPDKF-----VAAAARNPLCNLALMVGTTDIPDWCYVESYGSK 729
+ G S GG LT GQ P++F + AA R +LA + D P + GS
Sbjct: 124 MTGLSMGGALTVWAAGQFPERFAGIMPINAALRMESPDLAALAFNPDAP--AELPGIGSD 181
Query: 730 GKDS--------FTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQV 781
K T P+++ L + + + + +VK P + + +D VP NG ++
Sbjct: 182 IKAEGVKELAYPVTPVPAIKHLITIGAVAEML-LPRVKCPALIIQSREDHVVPPHNG-EL 239
Query: 782 IYH 784
IY+
Sbjct: 240 IYN 242
>pdb|2OKX|A Chain A, Crystal Structure Of Gh78 Family Rhamnosidase Of Bacillus
Sp. Gl1 At 1.9 A
pdb|2OKX|B Chain B, Crystal Structure Of Gh78 Family Rhamnosidase Of Bacillus
Sp. Gl1 At 1.9 A
Length = 956
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 147 APFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSV 204
AP P ++T A VVP P G + V + ++ + + +E +P+ + G V
Sbjct: 892 APQPCDLTWAEGVVPLPQGGHIAVSWEFVSAGKLKLRIEAPEDIEVNVTLPEGIEGEV 949
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,853,604
Number of Sequences: 62578
Number of extensions: 949634
Number of successful extensions: 2344
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 2268
Number of HSP's gapped (non-prelim): 86
length of query: 789
length of database: 14,973,337
effective HSP length: 107
effective length of query: 682
effective length of database: 8,277,491
effective search space: 5645248862
effective search space used: 5645248862
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)