Query 003886
Match_columns 789
No_of_seqs 554 out of 5043
Neff 9.4
Searched_HMMs 46136
Date Thu Mar 28 13:46:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003886.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003886hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1506 DAP2 Dipeptidyl aminop 100.0 4.3E-46 9.3E-51 427.2 48.6 559 103-787 19-579 (620)
2 PRK10115 protease 2; Provision 100.0 1.3E-41 2.9E-46 391.6 48.6 493 156-787 129-634 (686)
3 KOG2100 Dipeptidyl aminopeptid 100.0 2E-35 4.3E-40 340.5 45.4 579 103-788 103-711 (755)
4 KOG2281 Dipeptidyl aminopeptid 100.0 3.5E-33 7.6E-38 292.9 30.0 305 454-787 514-830 (867)
5 PRK01029 tolB translocation pr 100.0 2E-27 4.3E-32 261.2 30.3 271 108-498 146-425 (428)
6 COG1770 PtrB Protease II [Amin 100.0 5.9E-24 1.3E-28 228.0 46.1 305 455-787 327-637 (682)
7 PRK03629 tolB translocation pr 99.9 1.4E-25 2.9E-30 247.9 31.9 278 83-497 149-427 (429)
8 PRK05137 tolB translocation pr 99.9 1.8E-24 3.9E-29 240.5 31.8 278 83-497 151-432 (435)
9 PRK04792 tolB translocation pr 99.9 4.3E-24 9.4E-29 236.8 31.3 277 84-497 169-446 (448)
10 PRK04922 tolB translocation pr 99.9 3.8E-24 8.1E-29 237.6 29.8 263 109-496 168-431 (433)
11 PRK02889 tolB translocation pr 99.9 7.6E-24 1.6E-28 234.3 29.6 260 109-497 164-424 (427)
12 PRK04043 tolB translocation pr 99.9 1.6E-23 3.4E-28 228.6 30.1 255 110-488 156-412 (419)
13 PRK00178 tolB translocation pr 99.9 3.7E-23 8.1E-28 230.4 32.2 264 109-497 163-427 (430)
14 KOG2237 Predicted serine prote 99.9 9.7E-23 2.1E-27 216.5 32.9 265 498-788 392-661 (712)
15 COG1505 Serine proteases of th 99.9 2E-22 4.2E-27 213.4 34.3 305 448-787 301-608 (648)
16 PF00326 Peptidase_S9: Prolyl 99.9 3.6E-25 7.8E-30 222.0 8.5 169 609-787 2-172 (213)
17 PF00930 DPPIV_N: Dipeptidyl p 99.9 9E-23 1.9E-27 220.0 21.7 330 105-513 1-353 (353)
18 PRK01742 tolB translocation pr 99.9 7.4E-22 1.6E-26 218.8 29.2 271 83-497 154-425 (429)
19 PRK05137 tolB translocation pr 99.9 9.2E-22 2E-26 218.8 28.0 245 164-523 164-414 (435)
20 PRK01029 tolB translocation pr 99.9 1.6E-21 3.5E-26 214.4 27.4 252 158-523 141-405 (428)
21 PRK04043 tolB translocation pr 99.9 4.6E-21 1E-25 209.2 28.1 239 166-523 155-402 (419)
22 PRK03629 tolB translocation pr 99.9 9E-21 1.9E-25 209.5 28.4 241 166-522 164-407 (429)
23 PRK02889 tolB translocation pr 99.9 1.2E-20 2.7E-25 208.7 28.0 239 166-521 164-403 (427)
24 PRK04792 tolB translocation pr 99.9 3.5E-20 7.6E-25 205.6 28.9 241 165-521 182-425 (448)
25 TIGR02800 propeller_TolB tol-p 99.9 1.3E-19 2.8E-24 201.7 30.5 254 108-488 155-409 (417)
26 PRK04922 tolB translocation pr 99.9 7.1E-20 1.5E-24 203.4 27.9 242 165-522 167-412 (433)
27 PRK00178 tolB translocation pr 99.9 9.2E-20 2E-24 203.2 28.5 243 164-522 161-407 (430)
28 COG0823 TolB Periplasmic compo 99.8 2.2E-19 4.7E-24 194.3 24.0 238 122-482 168-407 (425)
29 PRK13604 luxD acyl transferase 99.8 2.6E-19 5.7E-24 182.3 21.1 207 568-786 14-229 (307)
30 PRK01742 tolB translocation pr 99.8 2.5E-18 5.5E-23 190.6 26.6 232 165-519 168-402 (429)
31 TIGR02800 propeller_TolB tol-p 99.8 1.1E-17 2.3E-22 186.3 28.3 244 162-521 152-397 (417)
32 PRK05077 frsA fermentation/res 99.8 7.9E-18 1.7E-22 184.0 21.8 201 569-787 174-383 (414)
33 COG0823 TolB Periplasmic compo 99.8 3.1E-17 6.7E-22 177.6 22.9 205 211-520 196-401 (425)
34 PLN02298 hydrolase, alpha/beta 99.8 4E-17 8.7E-22 175.4 20.3 213 567-786 36-278 (330)
35 PRK10566 esterase; Provisional 99.8 1.9E-17 4E-22 170.6 16.8 199 576-787 12-214 (249)
36 TIGR01840 esterase_phb esteras 99.7 6.4E-17 1.4E-21 161.7 16.7 191 578-787 1-196 (212)
37 PHA02857 monoglyceride lipase; 99.7 2.6E-16 5.7E-21 164.7 20.5 208 567-786 4-236 (276)
38 PLN02385 hydrolase; alpha/beta 99.7 2.7E-16 5.9E-21 170.1 20.5 210 568-786 66-306 (349)
39 PF05448 AXE1: Acetyl xylan es 99.7 1E-16 2.2E-21 167.9 14.7 209 567-786 60-289 (320)
40 COG3458 Acetyl esterase (deace 99.7 7.8E-17 1.7E-21 154.8 12.6 210 567-787 60-287 (321)
41 KOG1552 Predicted alpha/beta h 99.7 3E-16 6.5E-21 151.9 16.2 179 569-788 41-221 (258)
42 PLN02442 S-formylglutathione h 99.7 4.8E-16 1E-20 162.0 17.0 197 572-787 28-246 (283)
43 KOG1455 Lysophospholipase [Lip 99.7 1.3E-15 2.8E-20 150.4 18.4 213 567-787 31-274 (313)
44 PF06500 DUF1100: Alpha/beta h 99.6 4.6E-15 1E-19 155.8 15.4 209 549-784 160-377 (411)
45 PLN02652 hydrolase; alpha/beta 99.6 1.9E-14 4E-19 156.2 20.5 210 567-787 114-352 (395)
46 PRK10749 lysophospholipase L2; 99.6 3.4E-14 7.3E-19 152.3 22.3 129 567-707 34-167 (330)
47 KOG4391 Predicted alpha/beta h 99.6 9.2E-15 2E-19 135.4 13.5 190 567-786 58-248 (300)
48 TIGR02821 fghA_ester_D S-formy 99.6 2.3E-14 4.9E-19 149.2 17.4 198 572-787 23-240 (275)
49 PRK10985 putative hydrolase; P 99.6 5.1E-14 1.1E-18 150.4 19.5 208 569-785 37-281 (324)
50 PF02129 Peptidase_S15: X-Pro 99.6 6.3E-15 1.4E-19 153.3 11.7 209 572-788 1-256 (272)
51 COG1647 Esterase/lipase [Gener 99.6 1.4E-14 3E-19 135.9 12.1 177 593-787 16-209 (243)
52 COG4946 Uncharacterized protei 99.6 2.3E-12 4.9E-17 132.0 29.1 187 259-513 327-514 (668)
53 KOG0271 Notchless-like WD40 re 99.6 2.3E-13 5.1E-18 135.7 20.7 281 154-503 116-467 (480)
54 PLN02511 hydrolase 99.6 8.2E-14 1.8E-18 152.0 19.2 211 568-786 76-326 (388)
55 PF10503 Esterase_phd: Esteras 99.6 4.7E-14 1E-18 138.4 14.7 190 577-785 2-195 (220)
56 PF00930 DPPIV_N: Dipeptidyl p 99.6 2.4E-13 5.1E-18 146.8 20.9 262 162-521 1-315 (353)
57 PRK00870 haloalkane dehalogena 99.5 3.6E-13 7.8E-18 142.9 21.0 105 591-705 45-149 (302)
58 COG2267 PldB Lysophospholipase 99.5 3.3E-13 7.1E-18 140.9 19.5 207 567-787 13-257 (298)
59 TIGR00976 /NonD putative hydro 99.5 1.2E-13 2.6E-18 157.9 17.0 132 570-710 3-136 (550)
60 TIGR03343 biphenyl_bphD 2-hydr 99.5 1.8E-13 3.9E-18 143.7 15.8 184 592-788 30-252 (282)
61 COG0412 Dienelactone hydrolase 99.5 2.8E-13 6.1E-18 136.1 16.3 168 573-787 11-186 (236)
62 TIGR03611 RutD pyrimidine util 99.5 2.9E-13 6.3E-18 139.6 16.4 186 590-787 11-226 (257)
63 TIGR02240 PHA_depoly_arom poly 99.5 6.7E-13 1.5E-17 138.8 18.5 200 571-788 9-236 (276)
64 PRK05371 x-prolyl-dipeptidyl a 99.5 6.8E-13 1.5E-17 154.7 20.0 170 613-787 271-483 (767)
65 PF12695 Abhydrolase_5: Alpha/ 99.5 3.7E-13 8E-18 125.8 14.3 131 594-786 1-131 (145)
66 PF01738 DLH: Dienelactone hyd 99.5 1.1E-13 2.4E-18 139.1 11.1 165 576-786 1-172 (218)
67 COG0429 Predicted hydrolase of 99.5 1.8E-12 3.9E-17 130.1 18.8 196 571-778 57-293 (345)
68 PLN02965 Probable pheophorbida 99.5 1.5E-12 3.3E-17 134.4 18.5 101 594-705 5-106 (255)
69 TIGR02427 protocat_pcaD 3-oxoa 99.5 4.8E-13 1E-17 137.0 14.3 183 591-787 12-221 (251)
70 PLN02824 hydrolase, alpha/beta 99.5 1.5E-12 3.3E-17 137.5 17.1 107 592-706 29-137 (294)
71 COG4099 Predicted peptidase [G 99.5 3.2E-13 6.9E-18 131.4 10.5 164 571-786 169-342 (387)
72 TIGR03056 bchO_mg_che_rel puta 99.5 4.6E-12 1E-16 132.5 20.3 104 591-706 27-130 (278)
73 PLN03087 BODYGUARD 1 domain co 99.4 4.1E-12 8.8E-17 139.7 19.6 123 569-705 181-308 (481)
74 PF12697 Abhydrolase_6: Alpha/ 99.4 2.1E-13 4.5E-18 137.2 8.5 182 595-787 1-204 (228)
75 PRK10673 acyl-CoA esterase; Pr 99.4 3.9E-12 8.5E-17 131.3 18.0 187 588-788 12-224 (255)
76 PRK11460 putative hydrolase; P 99.4 2.9E-12 6.4E-17 129.4 16.2 153 589-787 13-176 (232)
77 PRK10162 acetyl esterase; Prov 99.4 7.6E-12 1.6E-16 132.9 19.6 184 572-787 66-274 (318)
78 TIGR01250 pro_imino_pep_2 prol 99.4 3.8E-12 8.2E-17 133.5 16.6 109 591-707 24-132 (288)
79 TIGR01607 PST-A Plasmodium sub 99.4 6.4E-12 1.4E-16 134.3 18.3 131 569-707 3-186 (332)
80 TIGR03866 PQQ_ABC_repeats PQQ- 99.4 1.6E-10 3.5E-15 122.1 28.9 247 156-523 33-281 (300)
81 PF14583 Pectate_lyase22: Olig 99.4 2.3E-11 4.9E-16 126.3 21.0 314 102-521 41-383 (386)
82 PRK11071 esterase YqiA; Provis 99.4 8.1E-12 1.8E-16 121.9 16.7 156 593-786 2-163 (190)
83 TIGR03101 hydr2_PEP hydrolase, 99.4 4.2E-12 9.1E-17 129.4 15.0 129 572-710 8-138 (266)
84 PF12715 Abhydrolase_7: Abhydr 99.4 9.2E-13 2E-17 135.9 10.0 139 567-708 92-262 (390)
85 PRK03592 haloalkane dehalogena 99.4 1.2E-11 2.5E-16 130.8 18.9 101 592-705 27-127 (295)
86 PLN00021 chlorophyllase 99.4 1.5E-11 3.3E-16 128.9 19.2 118 574-707 37-167 (313)
87 PLN02211 methyl indole-3-aceta 99.4 1.2E-11 2.6E-16 128.5 17.3 107 589-705 15-121 (273)
88 PRK10349 carboxylesterase BioH 99.4 5.8E-12 1.3E-16 130.2 14.8 179 592-788 13-225 (256)
89 KOG4178 Soluble epoxide hydrol 99.4 2.1E-11 4.5E-16 123.0 17.5 110 588-707 40-149 (322)
90 TIGR01392 homoserO_Ac_trn homo 99.4 7.8E-12 1.7E-16 135.3 15.6 130 572-706 14-162 (351)
91 TIGR03695 menH_SHCHC 2-succiny 99.4 1.4E-11 3E-16 125.9 16.6 104 593-707 2-106 (251)
92 KOG1838 Alpha/beta hydrolase [ 99.4 3.1E-11 6.8E-16 126.0 19.1 200 569-776 99-339 (409)
93 TIGR01249 pro_imino_pep_1 prol 99.4 9.8E-12 2.1E-16 132.0 15.8 119 571-706 12-130 (306)
94 TIGR01738 bioH putative pimelo 99.4 4.6E-12 9.9E-17 129.3 12.3 178 592-787 4-216 (245)
95 KOG0293 WD40 repeat-containing 99.3 5.8E-11 1.3E-15 120.0 18.9 279 154-510 225-505 (519)
96 KOG0271 Notchless-like WD40 re 99.3 8.8E-12 1.9E-16 124.7 12.9 125 268-459 341-467 (480)
97 COG4946 Uncharacterized protei 99.3 3E-10 6.5E-15 116.7 24.3 334 108-523 50-479 (668)
98 PLN02872 triacylglycerol lipas 99.3 1.2E-11 2.5E-16 133.8 13.9 136 567-706 48-197 (395)
99 PLN02679 hydrolase, alpha/beta 99.3 2.1E-11 4.5E-16 132.2 15.8 103 592-706 88-191 (360)
100 COG0657 Aes Esterase/lipase [L 99.3 7.6E-12 1.7E-16 133.1 11.9 195 573-787 61-271 (312)
101 PLN02578 hydrolase 99.3 3.5E-11 7.5E-16 130.3 17.1 100 593-705 87-186 (354)
102 PRK07581 hypothetical protein; 99.3 1.4E-11 3.1E-16 132.9 13.8 109 591-706 40-159 (339)
103 PF14583 Pectate_lyase22: Olig 99.3 1.4E-10 3.1E-15 120.5 20.4 270 137-507 19-302 (386)
104 KOG0318 WD40 repeat stress pro 99.3 1.1E-09 2.5E-14 114.2 26.6 67 156-232 193-260 (603)
105 PRK03204 haloalkane dehalogena 99.3 6.5E-11 1.4E-15 124.3 17.8 103 592-706 34-136 (286)
106 COG2945 Predicted hydrolase of 99.3 4.4E-11 9.6E-16 110.1 14.2 159 574-785 14-175 (210)
107 PRK06489 hypothetical protein; 99.3 1.2E-11 2.7E-16 134.3 12.4 107 592-705 69-188 (360)
108 PLN02894 hydrolase, alpha/beta 99.3 8.1E-11 1.7E-15 129.0 18.8 106 590-705 103-210 (402)
109 TIGR01836 PHA_synth_III_C poly 99.3 3.5E-11 7.6E-16 130.2 15.7 122 577-708 49-173 (350)
110 TIGR03100 hydr1_PEP hydrolase, 99.3 1.4E-11 3E-16 128.2 11.4 124 571-706 9-134 (274)
111 PRK14875 acetoin dehydrogenase 99.3 3.8E-11 8.3E-16 131.4 15.4 104 590-706 129-232 (371)
112 TIGR03866 PQQ_ABC_repeats PQQ- 99.3 2.2E-09 4.7E-14 113.4 26.9 240 104-484 38-288 (300)
113 KOG0318 WD40 repeat stress pro 99.3 5.4E-09 1.2E-13 109.2 27.9 319 85-486 6-360 (603)
114 PRK00175 metX homoserine O-ace 99.3 6.5E-11 1.4E-15 129.2 14.7 114 591-706 47-182 (379)
115 PF07859 Abhydrolase_3: alpha/ 99.2 3E-11 6.4E-16 120.9 10.8 172 595-787 1-192 (211)
116 KOG0315 G-protein beta subunit 99.2 9.3E-10 2E-14 104.5 18.2 253 154-487 41-299 (311)
117 KOG4409 Predicted hydrolase/ac 99.2 2.2E-10 4.7E-15 115.9 14.7 108 590-706 88-195 (365)
118 KOG1515 Arylacetamide deacetyl 99.2 2.4E-10 5.2E-15 119.1 15.1 125 574-709 72-210 (336)
119 PRK11126 2-succinyl-6-hydroxy- 99.2 1.2E-10 2.6E-15 119.2 12.8 100 592-706 2-102 (242)
120 KOG4667 Predicted esterase [Li 99.2 1.1E-09 2.3E-14 102.4 17.0 189 590-787 31-227 (269)
121 PRK11028 6-phosphogluconolacto 99.2 8.9E-08 1.9E-12 102.9 33.8 248 155-510 36-296 (330)
122 PRK11028 6-phosphogluconolacto 99.2 1.7E-08 3.8E-13 108.4 28.0 256 103-483 41-313 (330)
123 PF10282 Lactonase: Lactonase, 99.2 1.8E-08 3.9E-13 108.6 27.7 269 105-484 45-332 (345)
124 PLN03084 alpha/beta hydrolase 99.2 8.5E-10 1.8E-14 119.2 17.3 107 591-706 126-232 (383)
125 KOG0279 G protein beta subunit 99.2 2.2E-09 4.8E-14 103.7 18.1 267 125-473 36-312 (315)
126 PF02230 Abhydrolase_2: Phosph 99.2 4.4E-10 9.4E-15 112.6 13.7 160 588-788 10-184 (216)
127 KOG0286 G-protein beta subunit 99.1 8E-09 1.7E-13 100.5 21.1 263 154-501 56-329 (343)
128 COG2706 3-carboxymuconate cycl 99.1 6.1E-08 1.3E-12 97.9 27.8 271 105-485 48-332 (346)
129 TIGR01838 PHA_synth_I poly(R)- 99.1 2.3E-09 5.1E-14 119.2 19.0 123 576-708 174-304 (532)
130 KOG0272 U4/U6 small nuclear ri 99.1 2.2E-09 4.7E-14 109.3 16.8 268 155-506 177-449 (459)
131 KOG0265 U5 snRNP-specific prot 99.1 1.4E-08 3.1E-13 99.2 21.8 284 154-519 48-336 (338)
132 PRK08775 homoserine O-acetyltr 99.1 8.7E-10 1.9E-14 119.0 15.1 79 616-706 94-173 (343)
133 PF02897 Peptidase_S9_N: Proly 99.1 1.8E-08 3.9E-13 111.9 25.8 274 157-524 127-407 (414)
134 cd00200 WD40 WD40 domain, foun 99.1 1.5E-08 3.2E-13 105.1 23.4 266 154-505 10-279 (289)
135 COG3509 LpqC Poly(3-hydroxybut 99.1 5.8E-10 1.3E-14 110.1 11.0 128 572-706 43-179 (312)
136 PF12740 Chlorophyllase2: Chlo 99.1 1.5E-09 3.2E-14 107.9 12.9 114 578-707 6-132 (259)
137 PRK05855 short chain dehydroge 99.1 2E-09 4.3E-14 125.5 15.8 105 570-691 9-114 (582)
138 PRK13616 lipoprotein LpqB; Pro 99.0 8.7E-09 1.9E-13 116.7 19.7 104 101-226 354-466 (591)
139 COG2936 Predicted acyl esteras 99.0 2.3E-09 5E-14 117.0 13.9 131 569-708 25-161 (563)
140 KOG0272 U4/U6 small nuclear ri 99.0 5.4E-09 1.2E-13 106.5 15.3 237 154-472 218-458 (459)
141 COG2272 PnbA Carboxylesterase 99.0 5.5E-10 1.2E-14 118.5 8.5 132 570-707 76-218 (491)
142 cd00312 Esterase_lipase Estera 99.0 5.4E-10 1.2E-14 127.1 9.0 131 571-707 76-214 (493)
143 PF10282 Lactonase: Lactonase, 99.0 2.5E-07 5.4E-12 99.8 29.1 279 127-511 13-315 (345)
144 KOG0273 Beta-transducin family 99.0 1.5E-08 3.2E-13 104.7 17.9 268 154-508 236-514 (524)
145 PLN02980 2-oxoglutarate decarb 99.0 5.9E-09 1.3E-13 132.3 18.6 107 591-705 1370-1479(1655)
146 COG0400 Predicted esterase [Ge 99.0 3.5E-09 7.6E-14 102.9 12.7 154 588-787 14-174 (207)
147 TIGR02658 TTQ_MADH_Hv methylam 99.0 1.9E-07 4.2E-12 98.2 26.6 127 375-523 197-332 (352)
148 KOG0266 WD40 repeat-containing 99.0 1.8E-08 3.9E-13 112.5 19.9 252 155-487 161-420 (456)
149 KOG1454 Predicted hydrolase/ac 99.0 2.9E-09 6.2E-14 112.5 12.3 101 590-700 56-157 (326)
150 PF08662 eIF2A: Eukaryotic tra 99.0 2.5E-08 5.5E-13 97.4 17.4 165 156-413 8-180 (194)
151 COG2706 3-carboxymuconate cycl 99.0 1.2E-06 2.6E-11 88.8 28.7 292 126-523 15-325 (346)
152 PRK06765 homoserine O-acetyltr 99.0 5E-09 1.1E-13 113.5 12.8 113 590-704 54-194 (389)
153 KOG0266 WD40 repeat-containing 99.0 7.1E-08 1.5E-12 107.8 22.2 203 154-419 204-416 (456)
154 PF08662 eIF2A: Eukaryotic tra 98.9 2.3E-08 5E-13 97.7 16.0 154 212-463 10-163 (194)
155 cd00200 WD40 WD40 domain, foun 98.9 9.3E-08 2E-12 99.0 21.8 270 102-471 15-288 (289)
156 KOG0291 WD40-repeat-containing 98.9 2.4E-07 5.2E-12 101.0 24.6 229 155-509 352-604 (893)
157 KOG1407 WD40 repeat protein [F 98.9 4.2E-07 9.2E-12 87.4 22.1 227 156-511 67-296 (313)
158 PF00135 COesterase: Carboxyle 98.9 1.5E-09 3.3E-14 125.1 6.7 132 570-705 105-244 (535)
159 PF00561 Abhydrolase_1: alpha/ 98.9 1.4E-09 3.1E-14 109.9 5.5 78 622-705 1-78 (230)
160 PF06342 DUF1057: Alpha/beta h 98.9 1.1E-07 2.4E-12 94.0 18.0 193 574-786 19-239 (297)
161 PTZ00421 coronin; Provisional 98.9 3.3E-07 7.2E-12 102.3 24.1 200 211-523 79-292 (493)
162 KOG1446 Histone H3 (Lys4) meth 98.9 1.1E-06 2.4E-11 87.1 24.5 252 154-486 15-272 (311)
163 PRK13616 lipoprotein LpqB; Pro 98.9 2.5E-07 5.3E-12 105.1 23.1 178 211-482 353-533 (591)
164 PTZ00421 coronin; Provisional 98.9 1E-06 2.2E-11 98.4 27.1 212 154-483 76-297 (493)
165 KOG0263 Transcription initiati 98.8 5.6E-07 1.2E-11 99.1 23.4 198 154-413 452-650 (707)
166 KOG4627 Kynurenine formamidase 98.8 1.1E-08 2.5E-13 94.7 8.8 168 590-787 65-235 (270)
167 KOG2055 WD40 repeat protein [G 98.8 1.2E-07 2.6E-12 97.9 16.9 245 105-474 266-512 (514)
168 KOG0973 Histone transcription 98.8 1.1E-07 2.5E-12 108.0 18.5 153 154-391 70-239 (942)
169 KOG3101 Esterase D [General fu 98.8 7.5E-09 1.6E-13 96.2 7.4 181 575-774 27-230 (283)
170 PF05728 UPF0227: Uncharacteri 98.8 1.5E-07 3.2E-12 90.5 15.9 154 594-786 1-161 (187)
171 PF00756 Esterase: Putative es 98.8 1.5E-08 3.2E-13 104.3 9.8 135 573-709 5-153 (251)
172 KOG2624 Triglyceride lipase-ch 98.8 7.1E-08 1.5E-12 102.9 14.7 133 567-708 52-201 (403)
173 KOG0279 G protein beta subunit 98.8 2.3E-07 4.9E-12 90.1 16.3 174 105-308 72-247 (315)
174 KOG0293 WD40 repeat-containing 98.8 1.4E-07 2.9E-12 96.0 15.3 281 99-474 227-513 (519)
175 KOG3043 Predicted hydrolase re 98.8 4.2E-08 9E-13 93.0 10.6 161 576-788 28-193 (242)
176 PF07224 Chlorophyllase: Chlor 98.8 5.4E-08 1.2E-12 94.3 11.1 118 575-708 32-159 (307)
177 PF08538 DUF1749: Protein of u 98.8 6.3E-08 1.4E-12 98.2 12.2 113 591-711 32-153 (303)
178 KOG2055 WD40 repeat protein [G 98.8 2.2E-07 4.9E-12 95.9 15.8 236 154-509 214-457 (514)
179 PRK07868 acyl-CoA synthetase; 98.8 1.3E-07 2.8E-12 116.1 16.9 118 576-707 49-178 (994)
180 KOG0284 Polyadenylation factor 98.7 9.6E-08 2.1E-12 97.1 12.7 239 155-475 98-338 (464)
181 PF03403 PAF-AH_p_II: Platelet 98.7 1.7E-08 3.7E-13 108.7 7.9 113 590-705 98-261 (379)
182 COG4188 Predicted dienelactone 98.7 8.3E-08 1.8E-12 99.0 12.2 119 573-693 49-181 (365)
183 KOG2984 Predicted hydrolase [G 98.7 4.9E-09 1.1E-13 96.8 2.9 183 592-785 42-242 (277)
184 PF02897 Peptidase_S9_N: Proly 98.7 1.7E-06 3.6E-11 96.2 23.7 221 211-521 127-357 (414)
185 PRK10439 enterobactin/ferric e 98.7 8.3E-08 1.8E-12 104.6 12.9 125 573-706 191-323 (411)
186 PF08840 BAAT_C: BAAT / Acyl-C 98.7 1.4E-08 3E-13 100.8 6.3 132 652-786 3-143 (213)
187 KOG0973 Histone transcription 98.7 3.6E-07 7.9E-12 104.0 18.0 215 156-462 16-238 (942)
188 PTZ00420 coronin; Provisional 98.7 5E-06 1.1E-10 93.5 27.0 212 154-484 75-301 (568)
189 KOG0645 WD40 repeat protein [G 98.7 2E-06 4.4E-11 83.3 20.3 270 154-473 15-310 (312)
190 KOG0282 mRNA splicing factor [ 98.7 1.8E-07 3.8E-12 97.3 14.0 240 154-499 215-486 (503)
191 KOG0275 Conserved WD40 repeat- 98.7 1.6E-07 3.4E-12 92.5 12.5 247 156-523 216-469 (508)
192 PF02239 Cytochrom_D1: Cytochr 98.7 2.8E-06 6E-11 91.6 23.6 262 157-522 40-348 (369)
193 KOG0291 WD40-repeat-containing 98.7 4.9E-06 1.1E-10 91.1 25.0 231 155-508 309-541 (893)
194 KOG0315 G-protein beta subunit 98.7 2.3E-06 5E-11 81.9 19.7 253 180-508 20-279 (311)
195 cd00707 Pancreat_lipase_like P 98.7 5.2E-08 1.1E-12 100.9 9.7 112 590-706 34-147 (275)
196 KOG2564 Predicted acetyltransf 98.7 1.1E-07 2.4E-12 92.7 10.6 116 575-703 61-179 (343)
197 KOG2139 WD40 repeat protein [G 98.7 1.9E-06 4.2E-11 86.6 19.5 215 154-463 141-365 (445)
198 COG4757 Predicted alpha/beta h 98.7 2.8E-07 6.1E-12 87.5 12.5 209 569-787 11-244 (281)
199 TIGR01839 PHA_synth_II poly(R) 98.7 4.1E-07 8.9E-12 100.2 15.6 121 576-708 201-330 (560)
200 TIGR03230 lipo_lipase lipoprot 98.7 1.8E-07 4E-12 101.2 12.6 112 591-706 40-154 (442)
201 PTZ00420 coronin; Provisional 98.7 8.3E-06 1.8E-10 91.8 25.9 156 161-416 34-201 (568)
202 KOG0273 Beta-transducin family 98.6 2.8E-06 6E-11 88.3 20.0 233 100-392 239-514 (524)
203 KOG0772 Uncharacterized conser 98.6 2.5E-06 5.5E-11 89.4 19.3 271 122-508 184-478 (641)
204 PF03583 LIP: Secretory lipase 98.6 6.8E-07 1.5E-11 93.1 14.6 105 599-712 3-119 (290)
205 KOG0275 Conserved WD40 repeat- 98.6 4.8E-07 1E-11 89.1 11.8 200 154-416 264-471 (508)
206 KOG0296 Angio-associated migra 98.6 2.1E-05 4.6E-10 79.5 23.1 286 125-506 86-387 (399)
207 COG3571 Predicted hydrolase of 98.6 1.7E-06 3.7E-11 77.2 13.7 149 590-780 12-163 (213)
208 TIGR02658 TTQ_MADH_Hv methylam 98.6 2E-05 4.3E-10 83.2 24.0 261 104-416 53-334 (352)
209 KOG1553 Predicted alpha/beta h 98.5 1.8E-07 3.9E-12 93.4 7.9 181 567-775 218-399 (517)
210 COG2021 MET2 Homoserine acetyl 98.5 1.2E-06 2.7E-11 90.2 14.1 113 590-704 49-180 (368)
211 KOG0305 Anaphase promoting com 98.5 4.3E-06 9.3E-11 90.5 18.1 242 154-474 218-461 (484)
212 KOG0282 mRNA splicing factor [ 98.5 1.8E-06 4E-11 89.9 14.5 211 154-471 259-502 (503)
213 PLN00181 protein SPA1-RELATED; 98.5 2.2E-05 4.8E-10 94.6 26.1 241 154-472 484-736 (793)
214 KOG2314 Translation initiation 98.5 6.3E-05 1.4E-09 80.0 25.1 261 155-521 251-525 (698)
215 KOG0263 Transcription initiati 98.5 1.3E-06 2.7E-11 96.4 13.2 193 211-473 455-648 (707)
216 PRK10115 protease 2; Provision 98.5 3.3E-05 7.1E-10 90.4 25.7 207 211-521 130-346 (686)
217 KOG0305 Anaphase promoting com 98.5 8.2E-06 1.8E-10 88.4 18.7 269 156-509 180-453 (484)
218 KOG1407 WD40 repeat protein [F 98.5 7.9E-06 1.7E-10 78.9 16.2 186 211-508 24-210 (313)
219 PF08450 SGL: SMP-30/Gluconola 98.4 5.3E-05 1.1E-09 77.6 23.4 235 158-507 4-245 (246)
220 KOG0286 G-protein beta subunit 98.4 1.6E-05 3.4E-10 78.1 17.5 229 211-510 59-296 (343)
221 KOG4497 Uncharacterized conser 98.4 3.5E-05 7.5E-10 76.8 19.5 54 444-498 319-372 (447)
222 KOG0296 Angio-associated migra 98.4 3.8E-05 8.2E-10 77.6 19.7 159 154-416 65-224 (399)
223 COG0596 MhpC Predicted hydrola 98.4 6E-06 1.3E-10 84.4 14.9 100 592-706 21-123 (282)
224 KOG4497 Uncharacterized conser 98.4 8.6E-07 1.9E-11 87.9 7.4 140 159-393 14-155 (447)
225 KOG1274 WD40 repeat protein [G 98.4 3.4E-05 7.3E-10 86.7 20.4 174 272-506 75-251 (933)
226 PF06821 Ser_hydrolase: Serine 98.3 4.1E-06 8.9E-11 79.7 11.5 139 595-786 1-141 (171)
227 KOG2314 Translation initiation 98.3 0.00021 4.6E-09 76.0 24.9 299 101-509 254-559 (698)
228 KOG0284 Polyadenylation factor 98.3 4.3E-06 9.3E-11 85.4 12.1 242 154-475 139-381 (464)
229 PF02273 Acyl_transf_2: Acyl t 98.3 7.9E-06 1.7E-10 78.6 12.5 206 569-787 8-223 (294)
230 KOG0643 Translation initiation 98.3 0.00016 3.5E-09 70.3 21.1 177 271-505 72-249 (327)
231 KOG3847 Phospholipase A2 (plat 98.3 1.6E-06 3.4E-11 86.1 7.5 114 588-704 114-273 (399)
232 KOG0645 WD40 repeat protein [G 98.3 0.00014 3.1E-09 70.8 20.3 145 296-505 63-213 (312)
233 TIGR03502 lipase_Pla1_cef extr 98.3 6.4E-06 1.4E-10 94.9 13.2 96 591-691 448-575 (792)
234 PLN00181 protein SPA1-RELATED; 98.3 0.00011 2.4E-09 88.7 24.6 209 154-472 576-791 (793)
235 KOG1009 Chromatin assembly com 98.3 5.4E-05 1.2E-09 77.6 17.8 163 154-387 66-246 (434)
236 KOG2096 WD40 repeat protein [G 98.3 0.0001 2.3E-09 73.2 19.1 180 273-507 209-393 (420)
237 KOG2096 WD40 repeat protein [G 98.2 0.00015 3.3E-09 72.0 19.8 132 335-508 209-352 (420)
238 KOG1516 Carboxylesterase and r 98.2 1.9E-06 4.1E-11 99.4 7.5 130 571-706 94-232 (545)
239 PF03959 FSH1: Serine hydrolas 98.2 3E-06 6.4E-11 84.4 7.6 153 591-786 3-188 (212)
240 KOG1274 WD40 repeat protein [G 98.2 0.00016 3.6E-09 81.4 21.1 154 156-413 99-263 (933)
241 COG2819 Predicted hydrolase of 98.2 4.2E-05 9E-10 76.0 14.6 55 652-706 117-172 (264)
242 KOG0283 WD40 repeat-containing 98.2 3.2E-05 6.9E-10 86.3 15.3 93 210-308 372-465 (712)
243 COG3386 Gluconolactonase [Carb 98.2 0.00079 1.7E-08 70.3 24.8 189 275-512 87-280 (307)
244 PF02239 Cytochrom_D1: Cytochr 98.2 8E-05 1.7E-09 80.4 17.8 196 167-484 6-210 (369)
245 PF06433 Me-amine-dh_H: Methyl 98.2 0.0017 3.7E-08 67.1 26.3 264 156-524 38-323 (342)
246 PF09752 DUF2048: Uncharacteri 98.2 6.9E-05 1.5E-09 77.6 16.1 123 576-705 77-209 (348)
247 PF12146 Hydrolase_4: Putative 98.1 6.8E-06 1.5E-10 66.9 7.0 58 573-639 1-58 (79)
248 KOG1273 WD40 repeat protein [G 98.1 0.0003 6.5E-09 69.9 19.3 248 105-487 32-291 (405)
249 PF07433 DUF1513: Protein of u 98.1 0.001 2.2E-08 68.0 23.8 185 157-417 54-252 (305)
250 KOG0278 Serine/threonine kinas 98.1 9.4E-05 2E-09 71.1 15.0 179 109-390 104-286 (334)
251 PF10340 DUF2424: Protein of u 98.1 2.2E-05 4.9E-10 82.5 11.7 120 577-709 107-238 (374)
252 KOG1446 Histone H3 (Lys4) meth 98.1 0.00045 9.9E-09 68.9 19.7 238 104-417 22-267 (311)
253 PF07433 DUF1513: Protein of u 98.1 0.0012 2.6E-08 67.5 23.1 239 155-487 6-258 (305)
254 KOG0771 Prolactin regulatory e 98.0 0.0001 2.2E-09 76.1 13.9 210 154-475 145-355 (398)
255 KOG0772 Uncharacterized conser 98.0 0.00041 8.8E-09 73.3 18.1 167 156-413 271-446 (641)
256 KOG2315 Predicted translation 98.0 0.0012 2.7E-08 70.7 21.7 240 101-463 130-374 (566)
257 KOG1445 Tumor-specific antigen 98.0 0.00018 3.8E-09 77.6 15.2 140 272-473 699-843 (1012)
258 KOG2112 Lysophospholipase [Lip 97.9 4.8E-05 1E-09 72.2 9.6 157 592-787 3-172 (206)
259 KOG0265 U5 snRNP-specific prot 97.9 0.00058 1.3E-08 67.6 17.3 166 272-508 68-237 (338)
260 COG3243 PhaC Poly(3-hydroxyalk 97.9 7.4E-05 1.6E-09 78.3 11.6 89 612-708 130-219 (445)
261 KOG0319 WD40-repeat-containing 97.9 0.00035 7.5E-09 77.0 17.1 194 159-413 25-223 (775)
262 COG3208 GrsT Predicted thioest 97.9 0.00015 3.2E-09 70.8 12.8 176 589-786 5-203 (244)
263 KOG0639 Transducin-like enhanc 97.9 9.3E-05 2E-09 77.6 11.9 165 126-392 486-654 (705)
264 KOG2315 Predicted translation 97.9 0.0019 4E-08 69.4 21.8 153 299-509 222-376 (566)
265 KOG0288 WD40 repeat protein Ti 97.9 0.0001 2.2E-09 75.7 11.3 266 113-471 183-458 (459)
266 KOG2551 Phospholipase/carboxyh 97.9 0.00029 6.4E-09 67.4 13.5 92 655-788 92-192 (230)
267 KOG0278 Serine/threonine kinas 97.9 0.00021 4.4E-09 68.8 12.4 133 273-475 165-298 (334)
268 COG5354 Uncharacterized protei 97.9 0.0028 6.1E-08 67.3 21.7 241 158-510 136-382 (561)
269 COG0627 Predicted esterase [Ge 97.9 3.7E-05 7.9E-10 80.2 7.8 120 588-710 50-191 (316)
270 KOG2382 Predicted alpha/beta h 97.9 0.00034 7.3E-09 71.5 14.5 106 588-702 48-155 (315)
271 KOG0288 WD40 repeat protein Ti 97.9 0.00013 2.9E-09 74.9 11.5 269 154-505 176-449 (459)
272 PLN02919 haloacid dehalogenase 97.8 0.036 7.9E-07 68.3 34.6 132 374-524 742-891 (1057)
273 COG5354 Uncharacterized protei 97.8 0.0026 5.6E-08 67.5 20.7 245 156-506 35-293 (561)
274 PF10647 Gmad1: Lipoprotein Lp 97.8 0.0011 2.3E-08 67.8 17.8 175 211-485 27-206 (253)
275 KOG2048 WD40 repeat protein [G 97.8 0.0041 8.9E-08 68.2 22.5 157 154-416 26-188 (691)
276 KOG1445 Tumor-specific antigen 97.8 0.00072 1.6E-08 73.0 15.8 77 360-464 709-785 (1012)
277 PF05677 DUF818: Chlamydia CHL 97.8 0.00024 5.2E-09 72.6 11.8 111 572-692 120-236 (365)
278 PF11339 DUF3141: Protein of u 97.8 0.00058 1.2E-08 73.4 14.9 107 589-708 66-178 (581)
279 PF05577 Peptidase_S28: Serine 97.8 0.00014 3.1E-09 81.0 11.1 111 592-707 29-149 (434)
280 KOG0640 mRNA cleavage stimulat 97.7 0.00042 9.1E-09 68.7 12.6 265 155-486 114-393 (430)
281 KOG0639 Transducin-like enhanc 97.7 0.00085 1.8E-08 70.7 15.5 228 156-507 422-653 (705)
282 PF10647 Gmad1: Lipoprotein Lp 97.7 0.0041 8.8E-08 63.6 20.1 108 98-229 25-133 (253)
283 PF11144 DUF2920: Protein of u 97.7 0.00091 2E-08 70.7 15.3 62 646-707 157-220 (403)
284 KOG2139 WD40 repeat protein [G 97.7 0.0013 2.7E-08 66.9 15.4 193 271-522 118-312 (445)
285 COG3545 Predicted esterase of 97.7 0.0012 2.5E-08 61.1 13.8 108 646-786 37-144 (181)
286 PF10230 DUF2305: Uncharacteri 97.7 0.00045 9.8E-09 71.1 12.6 110 592-706 2-122 (266)
287 PF07819 PGAP1: PGAP1-like pro 97.7 0.00033 7.2E-09 70.1 11.2 103 592-703 4-120 (225)
288 KOG0319 WD40-repeat-containing 97.7 0.0013 2.9E-08 72.6 16.2 154 154-342 63-221 (775)
289 PF08450 SGL: SMP-30/Gluconola 97.7 0.0037 8E-08 63.9 19.1 178 272-521 21-213 (246)
290 PTZ00472 serine carboxypeptida 97.7 0.00052 1.1E-08 76.4 13.5 131 573-708 60-218 (462)
291 KOG0643 Translation initiation 97.7 0.033 7.1E-07 54.7 23.6 147 154-392 53-211 (327)
292 TIGR01849 PHB_depoly_PhaZ poly 97.6 0.00079 1.7E-08 72.5 14.1 85 612-708 121-210 (406)
293 KOG0295 WD40 repeat-containing 97.6 0.00049 1.1E-08 69.8 11.4 213 154-415 151-367 (406)
294 KOG2394 WD40 protein DMR-N9 [G 97.6 0.00031 6.8E-09 74.6 10.5 74 370-474 289-362 (636)
295 PF00151 Lipase: Lipase; Inte 97.6 0.0001 2.2E-09 78.0 7.1 113 589-706 68-187 (331)
296 COG2382 Fes Enterochelin ester 97.6 0.00023 5E-09 71.8 9.1 126 576-708 82-214 (299)
297 KOG2110 Uncharacterized conser 97.6 0.0056 1.2E-07 62.6 18.0 141 273-475 106-249 (391)
298 KOG0306 WD40-repeat-containing 97.6 0.0023 5.1E-08 70.8 16.4 238 155-505 414-652 (888)
299 KOG1524 WD40 repeat-containing 97.6 0.00049 1.1E-08 73.0 10.9 59 154-227 105-165 (737)
300 KOG0310 Conserved WD40 repeat- 97.6 0.004 8.7E-08 65.8 17.4 232 154-510 69-302 (487)
301 KOG0303 Actin-binding protein 97.5 0.0057 1.2E-07 62.9 17.6 74 296-416 133-207 (472)
302 KOG0283 WD40 repeat-containing 97.5 0.0031 6.7E-08 70.9 16.6 91 265-392 382-472 (712)
303 KOG1539 WD repeat protein [Gen 97.5 0.0074 1.6E-07 67.8 19.3 131 272-471 514-645 (910)
304 COG1073 Hydrolases of the alph 97.5 0.00049 1.1E-08 72.3 10.1 211 574-787 31-260 (299)
305 KOG0295 WD40 repeat-containing 97.5 0.005 1.1E-07 62.7 16.2 251 155-523 110-366 (406)
306 COG3391 Uncharacterized conser 97.5 0.048 1E-06 59.5 25.6 187 273-522 96-284 (381)
307 PF06433 Me-amine-dh_H: Methyl 97.5 0.035 7.6E-07 57.7 22.6 134 296-488 185-332 (342)
308 PF06057 VirJ: Bacterial virul 97.5 0.00095 2.1E-08 63.1 10.4 100 594-706 4-107 (192)
309 PF07676 PD40: WD40-like Beta 97.4 0.00017 3.7E-09 49.9 3.8 29 365-393 2-30 (39)
310 PRK04940 hypothetical protein; 97.4 0.0021 4.5E-08 60.7 12.2 91 671-785 60-150 (180)
311 KOG2106 Uncharacterized conser 97.4 0.065 1.4E-06 57.2 24.1 261 155-506 248-510 (626)
312 KOG2919 Guanine nucleotide-bin 97.4 0.0052 1.1E-07 61.6 15.2 113 256-413 163-282 (406)
313 PF03096 Ndr: Ndr family; Int 97.4 0.0054 1.2E-07 62.2 15.5 123 575-708 10-136 (283)
314 PF01674 Lipase_2: Lipase (cla 97.4 0.00036 7.8E-09 68.8 7.0 89 595-691 4-95 (219)
315 KOG0313 Microtubule binding pr 97.4 0.018 4E-07 59.1 19.0 128 295-486 261-388 (423)
316 KOG2931 Differentiation-relate 97.4 0.0046 9.9E-08 61.8 14.4 120 576-707 34-158 (326)
317 KOG0289 mRNA splicing factor [ 97.4 0.033 7.1E-07 58.3 20.9 206 155-485 263-471 (506)
318 KOG4840 Predicted hydrolases o 97.4 0.0029 6.2E-08 60.2 12.2 108 592-709 36-147 (299)
319 KOG0268 Sof1-like rRNA process 97.4 0.00057 1.2E-08 69.3 8.1 138 271-475 208-346 (433)
320 TIGR02171 Fb_sc_TIGR02171 Fibr 97.4 0.01 2.3E-07 68.6 19.2 97 166-319 319-420 (912)
321 KOG0264 Nucleosome remodeling 97.4 0.019 4.2E-07 60.2 19.2 151 273-474 250-404 (422)
322 KOG0316 Conserved WD40 repeat- 97.4 0.022 4.7E-07 54.8 17.9 239 154-480 18-261 (307)
323 COG1770 PtrB Protease II [Amin 97.4 0.079 1.7E-06 59.2 24.8 214 211-523 132-350 (682)
324 COG1506 DAP2 Dipeptidyl aminop 97.3 0.018 3.9E-07 67.1 21.2 224 155-482 14-259 (620)
325 KOG2106 Uncharacterized conser 97.3 0.031 6.7E-07 59.5 20.3 82 273-390 428-510 (626)
326 PRK02888 nitrous-oxide reducta 97.3 0.016 3.6E-07 64.8 19.4 40 272-317 214-253 (635)
327 KOG1524 WD40 repeat-containing 97.3 0.0035 7.5E-08 66.8 13.2 96 211-388 108-203 (737)
328 KOG4389 Acetylcholinesterase/B 97.3 0.00023 4.9E-09 75.4 4.6 130 570-707 117-256 (601)
329 KOG1273 WD40 repeat protein [G 97.3 0.01 2.3E-07 59.3 15.7 186 211-508 27-217 (405)
330 PLN02733 phosphatidylcholine-s 97.3 0.00055 1.2E-08 75.0 7.8 90 607-705 107-200 (440)
331 KOG0647 mRNA export protein (c 97.3 0.073 1.6E-06 53.3 21.1 110 155-321 29-138 (347)
332 KOG0306 WD40-repeat-containing 97.3 0.0034 7.4E-08 69.6 13.1 194 154-393 455-656 (888)
333 KOG0641 WD40 repeat protein [G 97.2 0.082 1.8E-06 50.4 20.2 129 333-504 161-290 (350)
334 PF07676 PD40: WD40-like Beta 97.2 0.00058 1.3E-08 47.2 4.4 35 143-182 3-38 (39)
335 KOG1332 Vesicle coat complex C 97.2 0.049 1.1E-06 52.8 18.3 230 164-508 22-277 (299)
336 KOG0771 Prolactin regulatory e 97.2 0.0043 9.4E-08 64.5 12.1 150 154-392 187-345 (398)
337 PF06028 DUF915: Alpha/beta hy 97.2 0.0055 1.2E-07 62.1 12.7 177 594-787 13-218 (255)
338 KOG1063 RNA polymerase II elon 97.1 0.035 7.7E-07 61.3 19.1 119 296-475 527-649 (764)
339 KOG1063 RNA polymerase II elon 97.1 0.02 4.3E-07 63.2 17.1 117 205-393 522-640 (764)
340 KOG0307 Vesicle coat complex C 97.1 0.0036 7.9E-08 72.7 12.1 250 156-474 67-327 (1049)
341 KOG2394 WD40 protein DMR-N9 [G 97.1 0.00022 4.7E-09 75.7 2.1 92 154-261 291-384 (636)
342 KOG0650 WD40 repeat nucleolar 97.1 0.021 4.5E-07 62.0 16.5 237 154-483 401-646 (733)
343 KOG2919 Guanine nucleotide-bin 97.1 0.006 1.3E-07 61.2 11.6 98 211-308 53-172 (406)
344 PF04762 IKI3: IKI3 family; I 97.1 0.14 3E-06 62.1 25.3 40 272-317 236-275 (928)
345 PF04762 IKI3: IKI3 family; I 97.1 0.098 2.1E-06 63.4 24.0 62 154-229 76-142 (928)
346 KOG0310 Conserved WD40 repeat- 97.0 0.045 9.8E-07 58.1 18.1 218 106-461 78-297 (487)
347 COG3391 Uncharacterized conser 97.0 0.17 3.7E-06 55.2 23.6 210 156-484 76-291 (381)
348 KOG1332 Vesicle coat complex C 97.0 0.042 9E-07 53.3 16.0 91 364-485 200-296 (299)
349 KOG2183 Prolylcarboxypeptidase 97.0 0.0046 1E-07 64.5 10.4 133 572-708 61-205 (492)
350 KOG0294 WD40 repeat-containing 97.0 0.12 2.6E-06 52.1 19.5 142 108-317 44-187 (362)
351 PF05990 DUF900: Alpha/beta hy 96.9 0.0068 1.5E-07 61.0 11.0 115 589-709 15-140 (233)
352 KOG0289 mRNA splicing factor [ 96.9 0.038 8.2E-07 57.8 16.2 186 155-392 305-497 (506)
353 PF00975 Thioesterase: Thioest 96.9 0.0076 1.6E-07 60.8 11.5 97 594-704 2-102 (229)
354 KOG0316 Conserved WD40 repeat- 96.9 0.042 9.2E-07 52.9 15.3 234 211-522 21-258 (307)
355 KOG1963 WD40 repeat protein [G 96.9 0.18 4E-06 57.5 22.7 67 141-228 244-313 (792)
356 COG3386 Gluconolactonase [Carb 96.9 0.026 5.7E-07 59.0 15.1 77 375-476 114-193 (307)
357 KOG1523 Actin-related protein 96.9 0.022 4.7E-07 57.3 13.4 215 155-414 12-238 (361)
358 PLN02919 haloacid dehalogenase 96.9 0.12 2.5E-06 64.0 22.8 85 375-480 807-892 (1057)
359 KOG2048 WD40 repeat protein [G 96.9 0.047 1E-06 60.2 17.1 164 154-415 383-551 (691)
360 KOG2565 Predicted hydrolases o 96.9 0.0058 1.3E-07 62.8 9.5 121 572-703 132-261 (469)
361 KOG0640 mRNA cleavage stimulat 96.8 0.031 6.8E-07 55.8 14.0 205 106-417 173-388 (430)
362 KOG1538 Uncharacterized conser 96.8 0.088 1.9E-06 57.9 18.3 92 105-226 21-112 (1081)
363 KOG0303 Actin-binding protein 96.8 0.077 1.7E-06 55.0 17.0 214 91-412 27-249 (472)
364 TIGR02171 Fb_sc_TIGR02171 Fibr 96.8 0.0069 1.5E-07 70.0 10.6 104 336-479 330-443 (912)
365 KOG3967 Uncharacterized conser 96.8 0.017 3.8E-07 54.6 11.2 136 545-694 62-213 (297)
366 PF00450 Peptidase_S10: Serine 96.7 0.012 2.5E-07 65.5 12.0 134 571-708 21-183 (415)
367 KOG0269 WD40 repeat-containing 96.7 0.011 2.4E-07 65.9 11.3 143 271-476 154-296 (839)
368 COG4947 Uncharacterized protei 96.7 0.0024 5.2E-08 58.1 5.0 59 653-713 85-143 (227)
369 KOG0313 Microtubule binding pr 96.7 0.2 4.3E-06 51.8 18.6 100 271-415 279-379 (423)
370 KOG4328 WD40 protein [Function 96.7 0.24 5.2E-06 52.4 19.6 203 154-411 187-398 (498)
371 COG4814 Uncharacterized protei 96.6 0.039 8.4E-07 54.2 13.0 112 591-707 45-177 (288)
372 KOG1007 WD repeat protein TSSC 96.6 0.11 2.3E-06 51.8 16.0 239 106-393 22-280 (370)
373 PRK02888 nitrous-oxide reducta 96.6 0.098 2.1E-06 58.8 17.8 205 156-413 195-405 (635)
374 COG3150 Predicted esterase [Ge 96.6 0.025 5.3E-07 51.8 10.6 117 652-786 42-161 (191)
375 KOG1539 WD repeat protein [Gen 96.6 0.02 4.4E-07 64.5 12.1 93 271-410 554-646 (910)
376 KOG0285 Pleiotropic regulator 96.6 0.093 2E-06 53.6 15.5 200 154-417 152-353 (460)
377 KOG4378 Nuclear protein COP1 [ 96.6 0.4 8.7E-06 51.2 20.7 241 155-477 36-281 (673)
378 COG3490 Uncharacterized protei 96.5 0.55 1.2E-05 47.0 20.1 105 158-316 72-179 (366)
379 KOG0307 Vesicle coat complex C 96.5 0.019 4.1E-07 67.0 11.5 230 206-499 63-308 (1049)
380 KOG1009 Chromatin assembly com 96.5 0.057 1.2E-06 56.1 13.5 63 296-393 125-187 (434)
381 COG3490 Uncharacterized protei 96.4 0.14 3.1E-06 51.0 15.5 119 158-317 118-243 (366)
382 KOG0277 Peroxisomal targeting 96.4 0.041 8.9E-07 53.7 11.6 208 155-478 62-269 (311)
383 PF07082 DUF1350: Protein of u 96.4 0.034 7.3E-07 55.0 11.2 101 578-693 8-112 (250)
384 PF06977 SdiA-regulated: SdiA- 96.4 0.14 3.1E-06 51.6 16.1 165 154-413 22-202 (248)
385 KOG0641 WD40 repeat protein [G 96.4 0.41 8.9E-06 45.8 17.5 104 269-419 200-310 (350)
386 KOG3253 Predicted alpha/beta h 96.4 0.014 3.1E-07 63.6 8.9 153 589-787 173-332 (784)
387 KOG0299 U3 snoRNP-associated p 96.3 0.17 3.7E-06 53.5 16.3 71 211-283 206-276 (479)
388 KOG2110 Uncharacterized conser 96.3 0.038 8.3E-07 56.7 11.3 124 84-230 117-241 (391)
389 KOG0269 WD40 repeat-containing 96.3 0.043 9.4E-07 61.4 12.5 169 122-381 151-319 (839)
390 PF15492 Nbas_N: Neuroblastoma 96.3 0.76 1.6E-05 46.1 19.8 56 158-225 2-61 (282)
391 KOG1007 WD repeat protein TSSC 96.2 0.33 7.2E-06 48.4 16.8 148 296-509 125-280 (370)
392 KOG0277 Peroxisomal targeting 96.2 0.17 3.7E-06 49.5 14.5 178 271-511 36-214 (311)
393 KOG0646 WD40 repeat protein [G 96.2 0.068 1.5E-06 56.5 12.4 214 154-415 82-310 (476)
394 KOG0292 Vesicle coat complex C 96.2 0.23 4.9E-06 56.8 17.1 260 154-478 10-284 (1202)
395 PLN03016 sinapoylglucose-malat 96.2 0.042 9.2E-07 60.5 11.7 132 572-708 48-212 (433)
396 KOG1920 IkappaB kinase complex 96.1 4.1 8.9E-05 48.9 27.5 88 273-392 222-310 (1265)
397 PLN02209 serine carboxypeptida 96.1 0.026 5.7E-07 62.2 9.7 133 572-708 50-214 (437)
398 PF12048 DUF3530: Protein of u 96.1 0.1 2.2E-06 55.0 13.6 129 572-706 70-229 (310)
399 COG4782 Uncharacterized protei 96.0 0.043 9.4E-07 56.9 10.1 111 590-709 114-237 (377)
400 KOG4378 Nuclear protein COP1 [ 95.9 0.13 2.8E-06 54.8 13.2 138 156-382 167-304 (673)
401 KOG1282 Serine carboxypeptidas 95.9 0.048 1E-06 59.7 10.4 135 571-708 54-215 (454)
402 KOG2111 Uncharacterized conser 95.9 2.4 5.2E-05 43.2 21.7 99 335-475 159-257 (346)
403 KOG0264 Nucleosome remodeling 95.8 0.63 1.4E-05 49.3 17.7 146 269-475 196-348 (422)
404 KOG0308 Conserved WD40 repeat- 95.8 0.068 1.5E-06 58.8 10.9 154 209-412 75-243 (735)
405 PF06977 SdiA-regulated: SdiA- 95.8 0.94 2E-05 45.8 18.3 176 211-481 25-205 (248)
406 KOG2182 Hydrolytic enzymes of 95.7 0.048 1E-06 58.8 9.1 132 568-706 63-207 (514)
407 KOG0285 Pleiotropic regulator 95.7 0.26 5.7E-06 50.5 13.7 224 122-417 168-394 (460)
408 PF13360 PQQ_2: PQQ-like domai 95.6 1.8 4E-05 43.4 20.6 182 272-523 45-232 (238)
409 KOG1920 IkappaB kinase complex 95.6 0.65 1.4E-05 55.3 18.4 60 156-229 71-131 (1265)
410 COG3204 Uncharacterized protei 95.5 2.1 4.6E-05 43.4 19.3 88 373-483 182-270 (316)
411 KOG1036 Mitotic spindle checkp 95.5 2.7 5.8E-05 42.7 19.9 59 446-507 235-294 (323)
412 KOG4283 Transcription-coupled 95.5 2 4.4E-05 43.1 18.8 110 271-417 166-281 (397)
413 COG3204 Uncharacterized protei 95.5 1.7 3.6E-05 44.1 18.5 58 154-222 86-143 (316)
414 KOG3724 Negative regulator of 95.5 0.042 9.1E-07 62.1 8.2 70 621-698 132-208 (973)
415 COG3319 Thioesterase domains o 95.5 0.065 1.4E-06 54.3 8.8 100 593-707 1-104 (257)
416 KOG1538 Uncharacterized conser 95.4 0.15 3.3E-06 56.1 11.9 59 156-228 15-74 (1081)
417 KOG3975 Uncharacterized conser 95.4 0.4 8.7E-06 47.1 13.4 117 572-691 9-130 (301)
418 PF11187 DUF2974: Protein of u 95.3 0.023 5E-07 56.6 5.1 50 655-704 68-121 (224)
419 PF10142 PhoPQ_related: PhoPQ- 95.3 0.072 1.6E-06 56.8 8.8 120 665-787 166-290 (367)
420 COG1075 LipA Predicted acetylt 95.1 0.073 1.6E-06 56.9 8.5 99 594-706 61-164 (336)
421 KOG2321 WD40 repeat protein [G 95.0 2.1 4.6E-05 46.9 18.6 114 295-475 229-344 (703)
422 KOG0302 Ribosome Assembly prot 95.0 0.86 1.9E-05 47.3 14.9 160 257-475 217-379 (440)
423 KOG0650 WD40 repeat nucleolar 94.9 0.56 1.2E-05 51.4 14.1 184 272-507 421-627 (733)
424 KOG0294 WD40 repeat-containing 94.9 4.3 9.2E-05 41.4 19.2 82 273-392 107-189 (362)
425 PF05057 DUF676: Putative seri 94.9 0.074 1.6E-06 53.0 7.3 22 670-691 77-98 (217)
426 KOG0299 U3 snoRNP-associated p 94.9 1.1 2.3E-05 47.8 15.6 63 154-230 203-267 (479)
427 KOG0292 Vesicle coat complex C 94.8 0.73 1.6E-05 53.0 15.0 206 211-475 13-237 (1202)
428 PRK10252 entF enterobactin syn 94.7 0.17 3.6E-06 65.3 11.7 100 592-705 1068-1170(1296)
429 PF04053 Coatomer_WDAD: Coatom 94.6 0.28 6.1E-06 54.2 11.4 129 156-317 35-163 (443)
430 KOG4328 WD40 protein [Function 94.5 0.63 1.4E-05 49.4 12.9 173 271-509 208-391 (498)
431 KOG0302 Ribosome Assembly prot 94.5 1.7 3.6E-05 45.3 15.4 117 211-413 261-379 (440)
432 KOG1523 Actin-related protein 94.4 0.94 2E-05 46.0 13.3 65 292-391 53-120 (361)
433 KOG0267 Microtubule severing p 94.3 0.17 3.6E-06 56.5 8.6 176 110-308 75-252 (825)
434 KOG1034 Transcriptional repres 94.3 1.3 2.9E-05 45.2 14.0 96 271-413 113-212 (385)
435 KOG0270 WD40 repeat-containing 94.2 1.8 4E-05 45.9 15.4 146 271-479 264-409 (463)
436 PF02450 LCAT: Lecithin:choles 94.0 0.2 4.3E-06 54.8 8.7 82 609-705 66-159 (389)
437 KOG0274 Cdc4 and related F-box 93.9 7.3 0.00016 44.4 21.0 229 211-523 253-484 (537)
438 KOG4547 WD40 repeat-containing 93.8 3.3 7.1E-05 45.7 17.0 100 269-417 76-177 (541)
439 KOG0308 Conserved WD40 repeat- 93.7 0.74 1.6E-05 51.0 12.0 168 248-473 70-242 (735)
440 COG2319 FOG: WD40 repeat [Gene 93.7 8.3 0.00018 41.5 21.2 143 273-484 178-322 (466)
441 PF05705 DUF829: Eukaryotic pr 93.6 0.64 1.4E-05 47.1 11.2 180 593-787 1-206 (240)
442 PRK13613 lipoprotein LpqB; Pro 93.3 6.3 0.00014 45.4 19.5 104 101-228 367-475 (599)
443 KOG0646 WD40 repeat protein [G 93.3 1.8 4E-05 46.2 13.7 39 273-317 103-142 (476)
444 KOG0321 WD40 repeat-containing 93.2 4.2 9.1E-05 45.3 16.6 37 272-308 121-158 (720)
445 COG2939 Carboxypeptidase C (ca 93.0 0.2 4.4E-06 54.5 6.5 112 576-691 87-218 (498)
446 PRK13614 lipoprotein LpqB; Pro 92.9 6.4 0.00014 44.9 18.5 65 155-228 384-454 (573)
447 COG4257 Vgb Streptogramin lyas 92.9 6.6 0.00014 39.5 15.9 177 271-522 81-263 (353)
448 PLN02633 palmitoyl protein thi 92.8 1.3 2.8E-05 45.7 11.5 104 589-704 23-129 (314)
449 KOG1408 WD40 repeat protein [F 92.7 3.3 7.1E-05 46.7 15.0 112 297-475 599-714 (1080)
450 KOG2541 Palmitoyl protein thio 92.7 4.2 9.2E-05 40.8 14.4 98 592-702 24-124 (296)
451 TIGR02604 Piru_Ver_Nterm putat 92.7 4.8 0.0001 43.8 16.8 68 296-385 125-197 (367)
452 KOG1963 WD40 repeat protein [G 92.6 2.9 6.3E-05 48.2 14.9 73 295-414 252-324 (792)
453 KOG0268 Sof1-like rRNA process 92.6 0.97 2.1E-05 46.7 10.1 145 155-318 189-335 (433)
454 PRK13615 lipoprotein LpqB; Pro 92.3 8 0.00017 44.0 18.1 63 155-228 374-437 (557)
455 KOG3621 WD40 repeat-containing 92.3 6.8 0.00015 44.4 16.9 89 124-225 52-142 (726)
456 PF07519 Tannase: Tannase and 92.3 0.77 1.7E-05 51.5 10.1 128 575-709 16-153 (474)
457 PF03283 PAE: Pectinacetyleste 92.2 0.19 4.1E-06 54.0 5.0 39 652-690 137-175 (361)
458 KOG4388 Hormone-sensitive lipa 92.2 0.33 7.2E-06 53.1 6.6 89 591-690 395-488 (880)
459 cd00741 Lipase Lipase. Lipase 92.2 0.32 7E-06 45.4 6.1 38 654-693 13-50 (153)
460 KOG4283 Transcription-coupled 92.2 2.2 4.8E-05 42.8 11.8 153 268-484 61-229 (397)
461 PF01764 Lipase_3: Lipase (cla 92.0 0.33 7.1E-06 44.4 5.8 53 652-706 47-106 (140)
462 KOG2111 Uncharacterized conser 91.9 17 0.00037 37.3 20.2 96 271-413 157-257 (346)
463 KOG2041 WD40 repeat protein [G 91.7 9.2 0.0002 43.3 16.9 58 156-226 118-175 (1189)
464 PF02089 Palm_thioest: Palmito 91.6 0.65 1.4E-05 47.4 7.7 106 590-704 4-114 (279)
465 KOG0290 Conserved WD40 repeat- 91.5 17 0.00037 36.8 18.8 34 273-308 173-210 (364)
466 KOG0647 mRNA export protein (c 91.5 18 0.00039 36.9 21.0 213 122-392 45-272 (347)
467 PF11768 DUF3312: Protein of u 91.4 10 0.00022 42.3 17.0 94 275-416 238-333 (545)
468 TIGR02604 Piru_Ver_Nterm putat 91.4 6.4 0.00014 42.8 16.0 55 446-501 126-197 (367)
469 TIGR03300 assembly_YfgL outer 91.4 24 0.00053 38.3 23.4 59 455-523 241-299 (377)
470 KOG1034 Transcriptional repres 91.4 1.5 3.3E-05 44.7 9.9 144 271-474 64-211 (385)
471 KOG0276 Vesicle coat complex C 91.3 16 0.00034 41.0 17.9 201 155-416 15-219 (794)
472 smart00824 PKS_TE Thioesterase 91.1 1.5 3.3E-05 42.8 10.0 85 607-704 12-100 (212)
473 KOG3914 WD repeat protein WDR4 91.1 5.1 0.00011 42.1 13.6 93 275-417 134-228 (390)
474 PF13360 PQQ_2: PQQ-like domai 90.7 2.7 5.8E-05 42.3 11.6 141 273-481 3-145 (238)
475 COG2319 FOG: WD40 repeat [Gene 90.7 26 0.00057 37.5 24.0 170 273-509 134-305 (466)
476 KOG0276 Vesicle coat complex C 90.7 33 0.00072 38.5 23.5 169 126-321 76-249 (794)
477 PF13449 Phytase-like: Esteras 90.7 26 0.00056 37.3 22.2 98 371-477 146-252 (326)
478 KOG0267 Microtubule severing p 90.6 1.1 2.4E-05 50.3 8.9 96 273-416 92-188 (825)
479 PF11288 DUF3089: Protein of u 90.6 0.32 6.9E-06 47.3 4.3 85 622-707 46-138 (207)
480 KOG1408 WD40 repeat protein [F 90.5 10 0.00022 43.0 15.8 108 259-413 604-714 (1080)
481 PRK13614 lipoprotein LpqB; Pro 90.4 13 0.00029 42.4 17.5 56 155-225 344-399 (573)
482 PF15492 Nbas_N: Neuroblastoma 90.4 22 0.00048 36.0 20.3 31 372-413 230-260 (282)
483 PRK13613 lipoprotein LpqB; Pro 90.3 14 0.0003 42.7 17.8 85 373-480 456-543 (599)
484 KOG0649 WD40 repeat protein [G 90.3 7.1 0.00015 38.4 12.8 46 448-496 119-164 (325)
485 TIGR03300 assembly_YfgL outer 90.3 31 0.00067 37.5 24.5 63 454-523 278-340 (377)
486 KOG0321 WD40 repeat-containing 89.8 39 0.00085 38.1 19.8 60 154-225 101-162 (720)
487 cd00519 Lipase_3 Lipase (class 89.6 0.55 1.2E-05 47.3 5.3 52 653-706 112-168 (229)
488 PRK11138 outer membrane biogen 89.3 38 0.00082 37.1 23.5 63 454-523 293-355 (394)
489 PLN02606 palmitoyl-protein thi 89.2 3.9 8.5E-05 42.2 11.0 103 590-704 25-130 (306)
490 KOG4532 WD40-like repeat conta 89.1 26 0.00057 35.1 16.0 38 369-416 248-286 (344)
491 TIGR03712 acc_sec_asp2 accesso 89.1 2 4.4E-05 46.8 9.2 112 588-714 285-398 (511)
492 PF11768 DUF3312: Protein of u 88.8 9.3 0.0002 42.5 14.1 80 372-484 260-339 (545)
493 KOG0290 Conserved WD40 repeat- 88.7 29 0.00063 35.2 16.0 78 442-522 149-228 (364)
494 KOG0300 WD40 repeat-containing 88.5 14 0.00029 37.7 13.7 93 273-413 294-387 (481)
495 PRK13615 lipoprotein LpqB; Pro 88.0 27 0.0006 39.8 17.7 158 157-413 337-503 (557)
496 PF03022 MRJP: Major royal jel 87.9 28 0.00062 36.2 16.8 16 273-288 88-103 (287)
497 KOG1283 Serine carboxypeptidas 87.8 4.5 9.7E-05 41.5 10.0 134 572-708 12-168 (414)
498 PLN02517 phosphatidylcholine-s 87.8 1.1 2.3E-05 50.3 6.3 75 609-690 157-232 (642)
499 PF03088 Str_synth: Strictosid 87.7 2.6 5.5E-05 35.0 7.0 54 333-413 35-88 (89)
500 KOG2100 Dipeptidyl aminopeptid 87.3 74 0.0016 38.2 22.5 66 159-229 102-169 (755)
No 1
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=100.00 E-value=4.3e-46 Score=427.24 Aligned_cols=559 Identities=21% Similarity=0.280 Sum_probs=386.5
Q ss_pred cCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003886 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (789)
Q Consensus 103 ~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (789)
..+|+|..++|..+..+...+...+.+|+.+... ...++.. ..+..+.|||||+.++|.++.+....+++
T Consensus 19 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~------~~~~~~~~spdg~~~~~~~~~~~~~~~l~ 88 (620)
T COG1506 19 RVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGKT----VRLLTFG------GGVSELRWSPDGSVLAFVSTDGGRVAQLY 88 (620)
T ss_pred ccCCCCceeEEeeccccccccccccceEEEeccc----ccccccC------CcccccccCCCCCEEEEEeccCCCcceEE
Confidence 3458899999998877777778888999865321 2223333 46888999999999999985554567788
Q ss_pred EEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCC
Q 003886 183 ELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEED 262 (789)
Q Consensus 183 ~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 262 (789)
.+..++ ........+ ....|+|+|+.+++......... .+. +......-..|...
T Consensus 89 l~~~~g---~~~~~~~~v----------~~~~~~~~g~~~~~~~~~~~~~~---------~~~---~~~~~~~~~~~~~~ 143 (620)
T COG1506 89 LVDVGG---LITKTAFGV----------SDARWSPDGDRIAFLTAEGASKR---------DGG---DHLFVDRLPVWFDG 143 (620)
T ss_pred EEecCC---ceeeeeccc----------ccceeCCCCCeEEEEeccccccc---------CCc---eeeeecccceeecC
Confidence 877444 222223333 67899999999999433221110 000 00000000111111
Q ss_pred cccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEec
Q 003886 263 WGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 342 (789)
Q Consensus 263 ~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~ 342 (789)
-| ....+++++|.++ +...+ ......+..+.|.+|++. ++........ . ..-...+....
T Consensus 144 ~g-----~~~~~l~~~d~~~-~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~-------~~~~~~~~~~~ 203 (620)
T COG1506 144 RG-----GERSDLYVVDIES-KLIKL--GLGNLDVVSFATDGDGRL----VASIRLDDDA-D-------PWVTNLYVLIE 203 (620)
T ss_pred CC-----CcccceEEEccCc-ccccc--cCCCCceeeeeeCCCCce----eEEeeecccc-C-------CceEeeEEEec
Confidence 01 2468899999887 44444 455556667777777776 5555533220 0 00112223322
Q ss_pred ccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccc
Q 003886 343 SLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK 422 (789)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~ 422 (789)
.++.+..++........+.|.+||+.+++..+.... | ......+++++...+....
T Consensus 204 -----------------~~~~~~~~~~~~~~~~~~~~~~~gk~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~d~---- 259 (620)
T COG1506 204 -----------------GNGELESLTPGEGSISKLAFDADGKSIALLGTESDR--G-LAEGDFILLLDGELGEVDG---- 259 (620)
T ss_pred -----------------CCCceEEEcCCCceeeeeeeCCCCCeeEEeccCCcc--C-ccccceEEEEeccccccce----
Confidence 456778888887889999999999999998877642 1 1233466776622222211
Q ss_pred eeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEe-CCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCE
Q 003886 423 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-GSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDN 501 (789)
Q Consensus 423 ~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~-~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~ 501 (789)
...... . .. ......+.-++..++|.+.. .+...++.++..++....+....+ ....++.+++.
T Consensus 260 ---~~~~~~----~-~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~--~v~~f~~~~~~ 324 (620)
T COG1506 260 ---DLSSGD----D-TR-----GAWAVEGGLDGDGLLFIATDGGGSSPLFRVDDLGGGVEGLSGDDG--GVPGFDVDGRK 324 (620)
T ss_pred ---eeccCC----c-cc-----CcHHhccccCCCcEEEEEecCCCceEEEEEeccCCceeeecCCCc--eEEEEeeCCCE
Confidence 000000 0 00 00111122355667777776 677788888765555444444434 34567779999
Q ss_pred EEEEEeCCCCCCeEEEEeecccCCCceeeeeccCCCCCCCchhhhhccccCce-eeEeeecccccceeecCCCeeEEEEE
Q 003886 502 IIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQF-SIMKIPVKGVSANLTKGAQKPFEAIF 580 (789)
Q Consensus 502 l~~~~ss~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~-~~~~i~~~~~~~~~~~~~g~~l~~~~ 580 (789)
+++..++++.|+++|+++.. .. ..+ +..+. ..+...++ +.+.+ .++..||.++++|+
T Consensus 325 ~~~~~s~~~~p~~i~~~~~~-~~--~~~---------~~~~~---~~~~~~~~~~~e~~-------~~~~~dG~~i~~~l 382 (620)
T COG1506 325 LALAYSSPTEPPEIYLYDRG-EE--AKL---------TSSNN---SGLKKVKLAEPEPV-------TYKSNDGETIHGWL 382 (620)
T ss_pred EEEEecCCCCccceEEEcCC-Cc--eEE---------eeccc---ccccccccCCceEE-------EEEcCCCCEEEEEE
Confidence 99999999999999999862 11 111 01111 11111111 12222 66778999999999
Q ss_pred EecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHH
Q 003886 581 VSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAID 660 (789)
Q Consensus 581 ~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~ 660 (789)
++|.++++.+++|+||++||||.++....|....+.|+++||+|+.+|+|||.|||++|.+...+++|..+++|++++++
T Consensus 383 ~~P~~~~~~k~yP~i~~~hGGP~~~~~~~~~~~~q~~~~~G~~V~~~n~RGS~GyG~~F~~~~~~~~g~~~~~D~~~~~~ 462 (620)
T COG1506 383 YKPPGFDPRKKYPLIVYIHGGPSAQVGYSFNPEIQVLASAGYAVLAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAVD 462 (620)
T ss_pred ecCCCCCCCCCCCEEEEeCCCCccccccccchhhHHHhcCCeEEEEeCCCCCCccHHHHHHhhhhccCCccHHHHHHHHH
Confidence 99999998889999999999999888878888999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCCh
Q 003886 661 HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSV 740 (789)
Q Consensus 661 ~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (789)
++.+.+.+|++||+|+|||||||||++++++.| +|+|+++.++++++..++...+...+........ .+.+
T Consensus 463 ~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 533 (620)
T COG1506 463 ALVKLPLVDPERIGITGGSYGGYMTLLAATKTP-RFKAAVAVAGGVDWLLYFGESTEGLRFDPEENGG--------GPPE 533 (620)
T ss_pred HHHhCCCcChHHeEEeccChHHHHHHHHHhcCc-hhheEEeccCcchhhhhccccchhhcCCHHHhCC--------Cccc
Confidence 999999999999999999999999999999876 8999999999888887776665544433222211 2222
Q ss_pred hhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 741 EDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 741 ~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
+.+.|.++||+.++.++++|+|||||++|.+||++|+++|+++|++
T Consensus 534 -~~~~~~~~sp~~~~~~i~~P~LliHG~~D~~v~~~q~~~~~~aL~~ 579 (620)
T COG1506 534 -DREKYEDRSPIFYADNIKTPLLLIHGEEDDRVPIEQAEQLVDALKR 579 (620)
T ss_pred -ChHHHHhcChhhhhcccCCCEEEEeecCCccCChHHHHHHHHHHHH
Confidence 6778999999999999999999999999999999999999999985
No 2
>PRK10115 protease 2; Provisional
Probab=100.00 E-value=1.3e-41 Score=391.62 Aligned_cols=493 Identities=15% Similarity=0.120 Sum_probs=335.7
Q ss_pred cEEEEeCCCCCeEEEEecCCC-CCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPEN-ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~-~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
.....|||||++|||..+..+ +..+++.++ .+|... ...+.... ..+.|++||+.|+|...++...
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l-~~~i~~~~----------~~~~w~~D~~~~~y~~~~~~~~- 196 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY-PELLDNVE----------PSFVWANDSWTFYYVRKHPVTL- 196 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC-CccccCcc----------eEEEEeeCCCEEEEEEecCCCC-
Confidence 456789999999999877653 344566666 445311 00111111 3589999999999987743100
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCC--ceEeccCCCCCCccceEEEee-CCCCCc
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG--EVQAVKGIPKSLSVGQVVWAP-LNEGLH 310 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g--~~~~l~~~~~~~~~~~~~wSP-Dg~~~~ 310 (789)
...+||++++.++ +-+.+. ...+....-..|.+ |++.
T Consensus 197 -------------------------------------~~~~v~~h~lgt~~~~d~lv~-~e~~~~~~~~~~~s~d~~~-- 236 (686)
T PRK10115 197 -------------------------------------LPYQVWRHTIGTPASQDELVY-EEKDDTFYVSLHKTTSKHY-- 236 (686)
T ss_pred -------------------------------------CCCEEEEEECCCChhHCeEEE-eeCCCCEEEEEEEcCCCCE--
Confidence 2367999999988 444442 11111122234545 8887
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCC-CCccCcceecCCCCEEEEE
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES-ISSAFFPRFSPDGKFLVFL 389 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~-~~~~~~p~~SpDG~~la~~ 389 (789)
++..+... ..+.+++++.+. ..+..+.+... ...... +...|..+++.
T Consensus 237 --l~i~~~~~------------~~~~~~l~~~~~---------------~~~~~~~~~~~~~~~~~~--~~~~~~~ly~~ 285 (686)
T PRK10115 237 --VVIHLASA------------TTSEVLLLDAEL---------------ADAEPFVFLPRRKDHEYS--LDHYQHRFYLR 285 (686)
T ss_pred --EEEEEECC------------ccccEEEEECcC---------------CCCCceEEEECCCCCEEE--EEeCCCEEEEE
Confidence 76544322 223577776421 22332322222 222222 22345677777
Q ss_pred ecCCCCCCCCccccceeEEeecCC-CCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeE
Q 003886 390 SAKSSVDSGAHSATDSLHRIDWPT-NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 468 (789)
Q Consensus 390 s~~~~~~~g~~~~~~~L~~~d~~~-~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~ 468 (789)
++.+. ....|..+++.. +..+ .+++ ...+ ..+..+.|. ++.|++....++..
T Consensus 286 tn~~~-------~~~~l~~~~~~~~~~~~-------~l~~---~~~~--------~~i~~~~~~--~~~l~~~~~~~g~~ 338 (686)
T PRK10115 286 SNRHG-------KNFGLYRTRVRDEQQWE-------ELIP---PREN--------IMLEGFTLF--TDWLVVEERQRGLT 338 (686)
T ss_pred EcCCC-------CCceEEEecCCCcccCe-------EEEC---CCCC--------CEEEEEEEE--CCEEEEEEEeCCEE
Confidence 76642 345688887753 2111 1111 1000 012233454 55899999999999
Q ss_pred EEEEEECCCCcEEEec-CCCCCceeEEee--ecCCEEEEEEeCCCCCCeEEEEeecccCCCceeeeeccCCCCCCCchhh
Q 003886 469 VIISVNVSSGELLRIT-PAESNFSWSLLT--LDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKV 545 (789)
Q Consensus 469 ~l~~~dl~tg~~~~lt-~~~~~~~~~~~s--~dg~~l~~~~ss~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~ 545 (789)
.|+.+++.++++..+. ..........++ .+++.+++..+++.+|+.+|.++..+++ ...+ +..+.
T Consensus 339 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~-~~~l---------~~~~~-- 406 (686)
T PRK10115 339 SLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE-RRVL---------KQTEV-- 406 (686)
T ss_pred EEEEEcCCCCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc-EEEE---------EecCC--
Confidence 9999998877888776 333222222333 5567899999999999999999987543 1111 11110
Q ss_pred hhccccCceeeEeeecccccceeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEE
Q 003886 546 KSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLL 625 (789)
Q Consensus 546 ~~~l~~~~~~~~~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~ 625 (789)
..+....++...+ .+++.||.+++++++.++.....++.|+||++|||++......|....+.|+++||+|+
T Consensus 407 -~~~~~~~~~~e~v-------~~~s~DG~~Ip~~l~~~~~~~~~~~~P~ll~~hGg~~~~~~p~f~~~~~~l~~rG~~v~ 478 (686)
T PRK10115 407 -PGFDAANYRSEHL-------WITARDGVEVPVSLVYHRKHFRKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYA 478 (686)
T ss_pred -CCcCccccEEEEE-------EEECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCccHHHHHHHHCCcEEE
Confidence 1122223344444 67788999999977765543345677999999999998878889888899999999999
Q ss_pred EEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 626 IVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 626 ~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
.+|+|||+|||+.|.+.....++..+++|+++++++|++++++|++|++|+|.|+||+++.+++.++|++|+|+|+.+|+
T Consensus 479 ~~n~RGs~g~G~~w~~~g~~~~k~~~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~ 558 (686)
T PRK10115 479 IVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPF 558 (686)
T ss_pred EEEcCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChhheeEEEecCCc
Confidence 99999999999999987777777788999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhcCCCCC-cchhhhhccCccccccCCCCC-hhhHHHHHhcCccccCCCCCCC-EEEEEeCCCCCCChHHHHHHH
Q 003886 706 CNLALMVGTTDIP-DWCYVESYGSKGKDSFTESPS-VEDLTRFHSKSPISHISKVKTP-TIFLLGAQDLRVPVSNGLQVI 782 (789)
Q Consensus 706 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sp~~~~~~i~~P-~Lii~G~~D~~vp~~~~~~l~ 782 (789)
.|+..++....++ .+...+.+|. |. .+..+.+.++||+.++.+++.| +||+||.+|.+||+.|+.+++
T Consensus 559 ~D~~~~~~~~~~p~~~~~~~e~G~---------p~~~~~~~~l~~~SP~~~v~~~~~P~lLi~~g~~D~RV~~~~~~k~~ 629 (686)
T PRK10115 559 VDVVTTMLDESIPLTTGEFEEWGN---------PQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQYWEPAKWV 629 (686)
T ss_pred hhHhhhcccCCCCCChhHHHHhCC---------CCCHHHHHHHHHcCchhccCccCCCceeEEecCCCCCcCchHHHHHH
Confidence 9998776543433 2322233332 32 2345666789999999999999 677799999999999999999
Q ss_pred HHCCC
Q 003886 783 YHIPF 787 (789)
Q Consensus 783 ~~l~~ 787 (789)
++|+.
T Consensus 630 a~Lr~ 634 (686)
T PRK10115 630 AKLRE 634 (686)
T ss_pred HHHHh
Confidence 99974
No 3
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-35 Score=340.50 Aligned_cols=579 Identities=18% Similarity=0.220 Sum_probs=359.0
Q ss_pred cCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003886 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (789)
Q Consensus 103 ~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (789)
..|||.+.+.+..+....-........++.++..+. .+. +...+........|||.|++|+|+.+++ ++
T Consensus 103 ~~s~d~~~~~~~~~~~~~~rhs~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~wsp~~~~l~yv~~~n-----iy 171 (755)
T KOG2100|consen 103 LISPDRKYILLGRNYKKRFRHSYTAKYHLYDLNTGE----KLH--PPEYEGSKIQYASWSPLGNDLAYVLHNN-----IY 171 (755)
T ss_pred ccChhhhhheeccCcccccceeeEEEEEEEEcCCCC----ccc--CcccCCCeeEEEEEcCCCCEEEEEEecc-----cc
Confidence 567888888776553222222333344444443332 110 1011112346788999999999998765 22
Q ss_pred EEe-cCCceeEEEec------CCCccccccCCCcc---cceeecCCCCEEEEEeecCCCCCCCcc-CCCCCCCCCCcCCC
Q 003886 183 ELW-SQSQLEKEFHV------PQTVHGSVYADGWF---EGISWNSDETLIAYVAEEPSPSKPTFS-LGSTKGGSSDKDCN 251 (789)
Q Consensus 183 ~i~-~~~~~~~~~~~------~~~~~g~v~~d~~~---~~~~wSpDg~~la~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 251 (789)
.-. ......+++.. -.+..+++|+++.+ ....|||||..++|......... ... ..+... ...+...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~i~ng~~Dw~yeeEv~~~~~a~wwsp~g~~la~~~~~dt~V~-~~~~~~~~~~-~~yp~~~ 249 (755)
T KOG2100|consen 172 YQSSEEDEDVRIVSNGGEDVIFNGKPDWIYEEEVLSSDSAIWWSPDGDRLAYASFNDTKVE-TINLPGYTDD-DQYPKST 249 (755)
T ss_pred cccCcCCCceEEEecCCCceEEcCCCCceeehhhcccCccceeCCCCceeEEEEecccccc-eEEecccccc-ccCcccc
Confidence 111 11122222211 12445677776644 47789999999999887654321 111 111111 0000000
Q ss_pred CCCCcceeeCCcccccCCccCceEEEEEccCCceEecc-C---CCCCCccceEEEeeCCCCCccEEEEEeecCCceeeee
Q 003886 252 SWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-G---IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGI 327 (789)
Q Consensus 252 ~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~-~---~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~ 327 (789)
.. .|... |. ......|+++|........+. . ......+..+.|.-+.+- ++-..++...
T Consensus 250 ~~----~ypk~-g~---~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~r~~~----- 312 (755)
T KOG2100|consen 250 NF----HYPKA-GA---PNPAVSLFVVDLHDPPRLGIPPPTNQRSGEYYVTNVKWDTTEKV----LVVWTNREQN----- 312 (755)
T ss_pred ee----ecCCC-CC---CCCeEEEEEEeCCCceeeccCCccccccCceEEEEEEEecCccE----EEEEEccCCC-----
Confidence 00 01111 11 123456888885544333211 0 111234557788888653 3333332221
Q ss_pred eeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCC-CCcc--CcceecCCCCEEEEEecCCCCCCCCccccc
Q 003886 328 KYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES-ISSA--FFPRFSPDGKFLVFLSAKSSVDSGAHSATD 404 (789)
Q Consensus 328 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~-~~~~--~~p~~SpDG~~la~~s~~~~~~~g~~~~~~ 404 (789)
...+-.+|.+. . .....+....+ .... ..|.++.|+....+...... + ...
T Consensus 313 ------~~~~~~cd~~~----~----------~~~~~~~~~~~~W~~~~~~~~~~~~d~~~~~~~~~~~~---~---~~~ 366 (755)
T KOG2100|consen 313 ------ISVETLCDTPG----I----------CRVVYEESSDGGWVEHQNVEPVFSSDGSSYLKVDSVSD---G---GYN 366 (755)
T ss_pred ------eeeeEEecCcc----c----------ceeeEeccccccccccccccceEeecCCceeEEEeecc---C---CEE
Confidence 11122222200 0 00000111111 1112 35889999865555443331 1 145
Q ss_pred eeEEeecCCC-CCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEe--CCeEEEEEEECCCCcEE
Q 003886 405 SLHRIDWPTN-GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW--GSSQVIISVNVSSGELL 481 (789)
Q Consensus 405 ~L~~~d~~~~-~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~--~~~~~l~~~dl~tg~~~ 481 (789)
++..+.+..+ ..+.++.+.+++..+ +.|+.|+++++|.+.. .+..+||.+++.++...
T Consensus 367 hi~~~~~~~~~~~~~lt~g~w~v~~i-------------------~~~~~~~~~i~f~~~~~~~~~~~ly~i~~~~~~~~ 427 (755)
T KOG2100|consen 367 HIAYLKLSNGSEPRMLTSGNWEVTSI-------------------LGYDKDSNRIYFDAYEEDPSERHLYSISLGSGTVE 427 (755)
T ss_pred EEEEEEcCCCCccccccccceEEEEe-------------------ccccCCCceEEEEecCCCCCceEEEEEEccccccc
Confidence 6777766665 555677776666542 2455788899999887 47889999999988877
Q ss_pred EecCCCC----CceeEEeeecCCEEEEEEeCCCCCCeEEEEeecccCCCceeeeeccCCCCCCCchhhhhccccCceeeE
Q 003886 482 RITPAES----NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIM 557 (789)
Q Consensus 482 ~lt~~~~----~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~ 557 (789)
.++.... .+....++...+.++..++.|..|... +........+. +.. + +.|..++..+....+...
T Consensus 428 ~lt~~~~~~~~~~~~~~~~~~~~~~v~~~~gP~~p~~~--~~~~~~~~~~~--~~~----L-e~n~~~~~~~~~~~~p~~ 498 (755)
T KOG2100|consen 428 SLTCSLITGPCTYLSVSFSKSAKYYVLSCSGPKVPDGQ--LTRHSSKNSKT--IVV----L-ETNEELKKTIENVALPIV 498 (755)
T ss_pred cccccCCCCcceEEEEecCCcccEEEEEccCCCCCcce--eeccccccceE--EEE----e-ccChhhHHHhhcccCCcc
Confidence 7765543 222335555678889999999988541 11111110111 111 1 345555554543322222
Q ss_pred eeecccccceeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCch-hh--HHHHHHHHHCCcEEEEEcCCCCCC
Q 003886 558 KIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SY--SKSLAFLSSVGYSLLIVNYRGSLG 634 (789)
Q Consensus 558 ~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-~~--~~~~~~la~~Gy~V~~~d~rGs~G 634 (789)
+.- +.. .+|...++.+++|+++++.+++|++|.+||||++.... .| .+....+..+|++|+.+|+||++|
T Consensus 499 ~~~------~i~-~~~~~~~~~~~lP~~~~~~~kyPllv~~yGGP~sq~v~~~~~~~~~~~~~s~~g~~v~~vd~RGs~~ 571 (755)
T KOG2100|consen 499 EFG------KIE-IDGITANAILILPPNFDPSKKYPLLVVVYGGPGSQSVTSKFSVDWNEVVVSSRGFAVLQVDGRGSGG 571 (755)
T ss_pred eeE------EEE-eccEEEEEEEecCCCCCCCCCCCEEEEecCCCCcceeeeeEEecHHHHhhccCCeEEEEEcCCCcCC
Confidence 110 111 27889999999999999999999999999999855433 22 223345678999999999999999
Q ss_pred CCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCC-CceeEEEEeCCccchhhhhc
Q 003886 635 FGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP-DKFVAAAARNPLCNLALMVG 713 (789)
Q Consensus 635 ~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p-~~~~a~v~~~pv~~~~~~~~ 713 (789)
+|.+++..+++++|..+++|+..+++++++++++|.+||+|+|+|+|||+++.++.+.+ +.|||+++++||+|+. ++.
T Consensus 572 ~G~~~~~~~~~~lG~~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd~~-~yd 650 (755)
T KOG2100|consen 572 YGWDFRSALPRNLGDVEVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTDWL-YYD 650 (755)
T ss_pred cchhHHHHhhhhcCCcchHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEecceeeee-eec
Confidence 99999999999999999999999999999999999999999999999999999999887 7899999999999986 433
Q ss_pred CCCCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCCCCCE-EEEEeCCCCCCChHHHHHHHHHCCCC
Q 003886 714 TTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPT-IFLLGAQDLRVPVSNGLQVIYHIPFS 788 (789)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~-Lii~G~~D~~vp~~~~~~l~~~l~~~ 788 (789)
.. ..+++|+.+. ++...|.+.++...+.+++.|. |++||+.|.+|+++|+.+++++|++.
T Consensus 651 s~--------------~terymg~p~-~~~~~y~e~~~~~~~~~~~~~~~LliHGt~DdnVh~q~s~~~~~aL~~~ 711 (755)
T KOG2100|consen 651 ST--------------YTERYMGLPS-ENDKGYEESSVSSPANNIKTPKLLLIHGTEDDNVHFQQSAILIKALQNA 711 (755)
T ss_pred cc--------------ccHhhcCCCc-cccchhhhccccchhhhhccCCEEEEEcCCcCCcCHHHHHHHHHHHHHC
Confidence 22 3356666665 3344488999999999999886 99999999999999999999999753
No 4
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-33 Score=292.89 Aligned_cols=305 Identities=18% Similarity=0.236 Sum_probs=234.3
Q ss_pred CCCEEEEEEEeCC--eEEEEEEECC-CCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeecccCCCceee
Q 003886 454 DGCTMLLSSIWGS--SQVIISVNVS-SGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWS 530 (789)
Q Consensus 454 Dg~~l~~~~~~~~--~~~l~~~dl~-tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~~~~~~~~ 530 (789)
--+.+||.+..++ ..+||.+... .|++.++|...-.++. .++.+=+.++..+++-..|+++..+.+..++... +
T Consensus 514 ~~~LVYf~gt~d~PlE~hLyvvsye~~g~~~rlt~~g~sh~~-~l~~~~d~fv~~~~sv~sP~cv~~y~ls~~~~~~-l- 590 (867)
T KOG2281|consen 514 VRKLVYFVGTKDTPLEHHLYVVSYENPGEIARLTEPGYSHSC-ELDQQCDHFVSYYSSVGSPPCVSLYSLSWPENDP-L- 590 (867)
T ss_pred cceEEEEEccCCCCceeeEEEEEEecCCceeeccCCCcccch-hhhhhhhhHhhhhhcCCCCceEEEEeccCCccCc-c-
Confidence 3456778877664 5689999987 8999999987653332 3555556688888999999999999887654110 0
Q ss_pred eeccCCCCCCCchhhhhccccCceeeEeeecccccceeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCch-h
Q 003886 531 WLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-S 609 (789)
Q Consensus 531 ~~~~~~~~~~~n~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-~ 609 (789)
.++... .....+...-...-+| ..-+.|.+..|..+.|++++|.++++++|||+|++++|||+-+... .
T Consensus 591 ----~~q~~~----~~~l~~~~~~~Pdy~p--~eif~fqs~tg~~lYgmiyKPhn~~pgkkYptvl~VYGGP~VQlVnns 660 (867)
T KOG2281|consen 591 ----PKQVSF----WAILVSGAPPPPDYVP--PEIFSFQSKTGLTLYGMIYKPHNFQPGKKYPTVLNVYGGPGVQLVNNS 660 (867)
T ss_pred ----cchhhH----HHHHHhcCCCCCccCC--hhheeeecCCCcEEEEEEEccccCCCCCCCceEEEEcCCCceEEeecc
Confidence 000000 0011111111111111 0113556677899999999999999999999999999999865433 3
Q ss_pred hH----HHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHc-CCCCCccEEEEEcCccHHH
Q 003886 610 YS----KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFL 684 (789)
Q Consensus 610 ~~----~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~~d~~rv~l~G~S~GG~~ 684 (789)
|. ...+.|+++||.|+.+|.|||.-+|-.|...+..++|..+++|+..++++|.++ +++|.+||+|-|||||||+
T Consensus 661 fkgi~ylR~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGYL 740 (867)
T KOG2281|consen 661 FKGIQYLRFCRLASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYL 740 (867)
T ss_pred ccceehhhhhhhhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccchheeEeccccccHH
Confidence 33 245689999999999999999999999999999999999999999999999997 5899999999999999999
Q ss_pred HHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCCC---CC
Q 003886 685 TTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK---TP 761 (789)
Q Consensus 685 a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~---~P 761 (789)
++.+++++|+.|+++|+.+||++|..+ ...+.++||+.|. .+-..|...|...++.++. ..
T Consensus 741 Slm~L~~~P~IfrvAIAGapVT~W~~Y---------------DTgYTERYMg~P~-~nE~gY~agSV~~~VeklpdepnR 804 (867)
T KOG2281|consen 741 SLMGLAQYPNIFRVAIAGAPVTDWRLY---------------DTGYTERYMGYPD-NNEHGYGAGSVAGHVEKLPDEPNR 804 (867)
T ss_pred HHHHhhcCcceeeEEeccCcceeeeee---------------cccchhhhcCCCc-cchhcccchhHHHHHhhCCCCCce
Confidence 999999999999999999999986433 2345789999985 3445677777777777764 45
Q ss_pred EEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 762 TIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 762 ~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
+|++||--|++|++.+...|..+|-+
T Consensus 805 LlLvHGliDENVHF~Hts~Lvs~lvk 830 (867)
T KOG2281|consen 805 LLLVHGLIDENVHFAHTSRLVSALVK 830 (867)
T ss_pred EEEEecccccchhhhhHHHHHHHHHh
Confidence 99999999999999999999988754
No 5
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.96 E-value=2e-27 Score=261.23 Aligned_cols=271 Identities=16% Similarity=0.195 Sum_probs=203.5
Q ss_pred CceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCe--EEEEecCCCCCCeEEEEe
Q 003886 108 GTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSK--LLVVRNPENESPIQFELW 185 (789)
Q Consensus 108 g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~--la~~~~~~~~~~~~~~i~ 185 (789)
+++|+|+....+...++.++.||+++. +|++.++||... .....|+|||||++ ++|++..+ +..++|.++
T Consensus 146 ~~~iayv~~~~~~~~~~~~~~l~~~d~--dG~~~~~lt~~~-----~~~~sP~wSPDG~~~~~~y~S~~~-g~~~I~~~~ 217 (428)
T PRK01029 146 SGKIIFSLSTTNSDTELKQGELWSVDY--DGQNLRPLTQEH-----SLSITPTWMHIGSGFPYLYVSYKL-GVPKIFLGS 217 (428)
T ss_pred cCEEEEEEeeCCcccccccceEEEEcC--CCCCceEcccCC-----CCcccceEccCCCceEEEEEEccC-CCceEEEEE
Confidence 468899988777666667889999886 566788888765 34678999999998 55688766 678999999
Q ss_pred -cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcc
Q 003886 186 -SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWG 264 (789)
Q Consensus 186 -~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g 264 (789)
.+|+.++++..+... ..++|||||++|||++...
T Consensus 218 l~~g~~~~lt~~~g~~----------~~p~wSPDG~~Laf~s~~~----------------------------------- 252 (428)
T PRK01029 218 LENPAGKKILALQGNQ----------LMPTFSPRKKLLAFISDRY----------------------------------- 252 (428)
T ss_pred CCCCCceEeecCCCCc----------cceEECCCCCEEEEEECCC-----------------------------------
Confidence 778888888876554 5799999999999987532
Q ss_pred cccCCccCceEEE--EEccC---CceEeccCCCCC-CccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceE
Q 003886 265 ETYAGKRQPSLFV--ININS---GEVQAVKGIPKS-LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 338 (789)
Q Consensus 265 ~~~~~~~~~~l~v--~d~~~---g~~~~l~~~~~~-~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~ 338 (789)
+..++|+ +++.+ ++.+++ +... .....++|||||+. |+|++++.+ ...||
T Consensus 253 ------g~~di~~~~~~~~~g~~g~~~~l--t~~~~~~~~~p~wSPDG~~----Laf~s~~~g------------~~~ly 308 (428)
T PRK01029 253 ------GNPDLFIQSFSLETGAIGKPRRL--LNEAFGTQGNPSFSPDGTR----LVFVSNKDG------------RPRIY 308 (428)
T ss_pred ------CCcceeEEEeecccCCCCcceEe--ecCCCCCcCCeEECCCCCE----EEEEECCCC------------CceEE
Confidence 1234555 45554 466777 3333 23467999999999 999985332 23699
Q ss_pred EEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCC
Q 003886 339 AVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 418 (789)
Q Consensus 339 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~ 418 (789)
+++++. .++..++|+........|.|||||++|+|.+... +..+|+++|+.+++.+.
T Consensus 309 ~~~~~~---------------~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~--------g~~~I~v~dl~~g~~~~ 365 (428)
T PRK01029 309 IMQIDP---------------EGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK--------GVRQICVYDLATGRDYQ 365 (428)
T ss_pred EEECcc---------------cccceEEeccCCCCccceeECCCCCEEEEEEcCC--------CCcEEEEEECCCCCeEE
Confidence 998721 2355778887766778999999999999998764 24589999999887765
Q ss_pred cccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeec
Q 003886 419 SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLD 498 (789)
Q Consensus 419 ~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~d 498 (789)
++.... ....+.|+|||+.|+|.+...+...||.+|+++++.++++...+....+.|+|-
T Consensus 366 Lt~~~~--------------------~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 366 LTTSPE--------------------NKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAF 425 (428)
T ss_pred ccCCCC--------------------CccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCC
Confidence 543210 123578999999999998877888999999999999999876655455667654
No 6
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=99.95 E-value=5.9e-24 Score=228.00 Aligned_cols=305 Identities=17% Similarity=0.166 Sum_probs=230.5
Q ss_pred CCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCcee-EEee--ecCCEEEEEEeCCCCCCeEEEEeecccCCCceeee
Q 003886 455 GCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSW-SLLT--LDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSW 531 (789)
Q Consensus 455 g~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~-~~~s--~dg~~l~~~~ss~~~p~~i~~~~~~~~~~~~~~~~ 531 (789)
.+.|++.-...+...++..+..+|+..-|......++. ...+ .+.+.|.+.++++++|..++-+|+.+++ ...+.-
T Consensus 327 ~~~lVl~eR~~glp~v~v~~~~~~~~~~i~f~~~ay~~~l~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~e-r~~Lkq 405 (682)
T COG1770 327 ADHLVLLERQEGLPRVVVRDRKTGEERGIAFDDEAYSAGLSGNPEFDSDRLRYSYSSMTTPATLFDYDMATGE-RTLLKQ 405 (682)
T ss_pred ccEEEEEecccCCceEEEEecCCCceeeEEecchhhhccccCCCCCCCccEEEEeecccccceeEEeeccCCc-EEEEEe
Confidence 35677776777888899999988988887665542221 1222 3567899999999999999999998765 111111
Q ss_pred eccCCCCCCCchhhhhccccCceeeEeeecccccceeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhH
Q 003886 532 LNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS 611 (789)
Q Consensus 532 ~~~~~~~~~~n~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~ 611 (789)
++| . ..++..++....| ..+..||..++..++.-++++..++.|++++.+|..+......|+
T Consensus 406 qeV----~-------~g~dp~~Y~s~ri-------wa~a~dgv~VPVSLvyrkd~~~~g~~p~lLygYGaYG~s~~p~Fs 467 (682)
T COG1770 406 QEV----P-------GGFDPEDYVSRRI-------WATADDGVQVPVSLVYRKDTKLDGSAPLLLYGYGAYGISMDPSFS 467 (682)
T ss_pred ccC----C-------CCCChhHeEEEEE-------EEEcCCCcEeeEEEEEecccCCCCCCcEEEEEeccccccCCcCcc
Confidence 111 1 1122233444444 345579999999998877777788999999999988877777887
Q ss_pred HHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHh
Q 003886 612 KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ 691 (789)
Q Consensus 612 ~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~ 691 (789)
...--|..+|++......||++..|+.|.+..........+.|++++.++|+++++.+.++|+++|+|.||+++..++.+
T Consensus 468 ~~~lSLlDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~ 547 (682)
T COG1770 468 IARLSLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANM 547 (682)
T ss_pred cceeeeecCceEEEEEEeecccccChHHHHhhhhhhccccHHHHHHHHHHHHHcCcCCccceEEeccCchhHHHHHHHhh
Confidence 66667889999999999999888899998776554455679999999999999999999999999999999999999999
Q ss_pred CCCceeEEEEeCCccchhhhhcCCCCC--cchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCCC-CCEEEEEeC
Q 003886 692 APDKFVAAAARNPLCNLALMVGTTDIP--DWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK-TPTIFLLGA 768 (789)
Q Consensus 692 ~p~~~~a~v~~~pv~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-~P~Lii~G~ 768 (789)
.|++|+++|+..|+.|...-+....+| .+.+.+ +.+....+..+.+..+||..++..-. .|+|++.|.
T Consensus 548 ~P~lf~~iiA~VPFVDvltTMlD~slPLT~~E~~E---------WGNP~d~e~y~yikSYSPYdNV~a~~YP~ilv~~Gl 618 (682)
T COG1770 548 APDLFAGIIAQVPFVDVLTTMLDPSLPLTVTEWDE---------WGNPLDPEYYDYIKSYSPYDNVEAQPYPAILVTTGL 618 (682)
T ss_pred ChhhhhheeecCCccchhhhhcCCCCCCCccchhh---------hCCcCCHHHHHHHhhcCchhccccCCCCceEEEccc
Confidence 999999999999999964433322222 111111 22223445667778899999987655 558999999
Q ss_pred CCCCCChHHHHHHHHHCCC
Q 003886 769 QDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 769 ~D~~vp~~~~~~l~~~l~~ 787 (789)
.|.+|...+..+..++|+.
T Consensus 619 ~D~rV~YwEpAKWvAkLR~ 637 (682)
T COG1770 619 NDPRVQYWEPAKWVAKLRE 637 (682)
T ss_pred cCCccccchHHHHHHHHhh
Confidence 9999999999999998864
No 7
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.95 E-value=1.4e-25 Score=247.86 Aligned_cols=278 Identities=16% Similarity=0.211 Sum_probs=205.3
Q ss_pred HHHHHHhhcCccccceEEEecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeC
Q 003886 83 SKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPS 162 (789)
Q Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~S 162 (789)
-.+|+.++..+.... ++|+|+....+ ++.++.||+++. ++.+.+++|.+. ..+..|+||
T Consensus 149 d~i~~~ltg~~g~f~-----------~riayv~~~~~---~~~~~~l~~~d~--dg~~~~~lt~~~-----~~~~~p~wS 207 (429)
T PRK03629 149 DEVFEKLTGIKGAFR-----------TRIAYVVQTNG---GQFPYELRVSDY--DGYNQFVVHRSP-----QPLMSPAWS 207 (429)
T ss_pred HHHHHHhcCCCCccC-----------CeEEEEEeeCC---CCcceeEEEEcC--CCCCCEEeecCC-----CceeeeEEc
Confidence 345666666555443 47788876533 355789999886 455667777665 457899999
Q ss_pred CCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCC
Q 003886 163 PSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGST 241 (789)
Q Consensus 163 PdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~ 241 (789)
|||++|||++... +..+++..+ .+|+.++++..+... ..+.|||||++|+|+....
T Consensus 208 PDG~~la~~s~~~-g~~~i~i~dl~~G~~~~l~~~~~~~----------~~~~~SPDG~~La~~~~~~------------ 264 (429)
T PRK03629 208 PDGSKLAYVTFES-GRSALVIQTLANGAVRQVASFPRHN----------GAPAFSPDGSKLAFALSKT------------ 264 (429)
T ss_pred CCCCEEEEEEecC-CCcEEEEEECCCCCeEEccCCCCCc----------CCeEECCCCCEEEEEEcCC------------
Confidence 9999999998654 456788777 567767666554433 5799999999999975432
Q ss_pred CCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCC
Q 003886 242 KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSE 321 (789)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~ 321 (789)
+..+||++|+++++.+++ +........+.|||||+. |+|++++.+
T Consensus 265 -----------------------------g~~~I~~~d~~tg~~~~l--t~~~~~~~~~~wSPDG~~----I~f~s~~~g 309 (429)
T PRK03629 265 -----------------------------GSLNLYVMDLASGQIRQV--TDGRSNNTEPTWFPDSQN----LAYTSDQAG 309 (429)
T ss_pred -----------------------------CCcEEEEEECCCCCEEEc--cCCCCCcCceEECCCCCE----EEEEeCCCC
Confidence 235799999999999998 455556778999999999 999985322
Q ss_pred ceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCcc
Q 003886 322 TRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 401 (789)
Q Consensus 322 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~ 401 (789)
..+||.+|+ +++..++|+........|.|||||++|+|.+...
T Consensus 310 ------------~~~Iy~~d~-----------------~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~-------- 352 (429)
T PRK03629 310 ------------RPQVYKVNI-----------------NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNG-------- 352 (429)
T ss_pred ------------CceEEEEEC-----------------CCCCeEEeecCCCCccCEEECCCCCEEEEEEccC--------
Confidence 237999998 7778888877665677899999999999988654
Q ss_pred ccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEE
Q 003886 402 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 481 (789)
Q Consensus 402 ~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~ 481 (789)
+..+|+++|+.++..+.++... ....+.|+|||+.|+|.+..++...|+.++++++..+
T Consensus 353 g~~~I~~~dl~~g~~~~Lt~~~---------------------~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~ 411 (429)
T PRK03629 353 GQQHIAKQDLATGGVQVLTDTF---------------------LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKA 411 (429)
T ss_pred CCceEEEEECCCCCeEEeCCCC---------------------CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeE
Confidence 2357999999887655444211 1135689999999999998877788999999877788
Q ss_pred EecCCCCCceeEEeee
Q 003886 482 RITPAESNFSWSLLTL 497 (789)
Q Consensus 482 ~lt~~~~~~~~~~~s~ 497 (789)
+++...+....+.|+|
T Consensus 412 ~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 412 RLPATDGQVKFPAWSP 427 (429)
T ss_pred ECccCCCCcCCcccCC
Confidence 8875444444445554
No 8
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.94 E-value=1.8e-24 Score=240.50 Aligned_cols=278 Identities=13% Similarity=0.122 Sum_probs=201.4
Q ss_pred HHHHHHhhcCccccceEEEecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeC
Q 003886 83 SKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPS 162 (789)
Q Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~S 162 (789)
-.+|+.++..+.+.. ++|+|+..... .+...+.||+++. ++.+.+++|... ..+..|+||
T Consensus 151 d~i~~~ltg~~g~f~-----------~~iafv~~~~~--~~~~~~~l~~~d~--dg~~~~~lt~~~-----~~v~~p~wS 210 (435)
T PRK05137 151 DAIYERLTGEKGYFD-----------TRIVYVAESGP--KNKRIKRLAIMDQ--DGANVRYLTDGS-----SLVLTPRFS 210 (435)
T ss_pred HHHHHHHhCCCCcCC-----------CeEEEEEeeCC--CCCcceEEEEECC--CCCCcEEEecCC-----CCeEeeEEC
Confidence 446666766553322 47788765321 2234678999886 555667787654 458899999
Q ss_pred CCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCC
Q 003886 163 PSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGST 241 (789)
Q Consensus 163 PdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~ 241 (789)
|||++|+|++..+ +..+++.++ .+++.++++...... ..++|||||++|+|.....
T Consensus 211 pDG~~lay~s~~~-g~~~i~~~dl~~g~~~~l~~~~g~~----------~~~~~SPDG~~la~~~~~~------------ 267 (435)
T PRK05137 211 PNRQEITYMSYAN-GRPRVYLLDLETGQRELVGNFPGMT----------FAPRFSPDGRKVVMSLSQG------------ 267 (435)
T ss_pred CCCCEEEEEEecC-CCCEEEEEECCCCcEEEeecCCCcc----------cCcEECCCCCEEEEEEecC------------
Confidence 9999999998765 457788877 566666666544333 6889999999999976432
Q ss_pred CCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCC
Q 003886 242 KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSE 321 (789)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~ 321 (789)
+..+||++|+++++.+++ +........+.|||||++ |+|++++.+
T Consensus 268 -----------------------------g~~~Iy~~d~~~~~~~~L--t~~~~~~~~~~~spDG~~----i~f~s~~~g 312 (435)
T PRK05137 268 -----------------------------GNTDIYTMDLRSGTTTRL--TDSPAIDTSPSYSPDGSQ----IVFESDRSG 312 (435)
T ss_pred -----------------------------CCceEEEEECCCCceEEc--cCCCCccCceeEcCCCCE----EEEEECCCC
Confidence 347899999999999998 444444567999999999 999985332
Q ss_pred ceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCcc
Q 003886 322 TRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 401 (789)
Q Consensus 322 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~ 401 (789)
..+||++|+ +++..++|+...+....|.|||||++|+|.+...
T Consensus 313 ------------~~~Iy~~d~-----------------~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~-------- 355 (435)
T PRK05137 313 ------------SPQLYVMNA-----------------DGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGG-------- 355 (435)
T ss_pred ------------CCeEEEEEC-----------------CCCCeEEeecCCCcccCeEECCCCCEEEEEEcCC--------
Confidence 237999998 7788889987766677899999999999988653
Q ss_pred ccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCe---EEEEEEECCCC
Q 003886 402 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS---QVIISVNVSSG 478 (789)
Q Consensus 402 ~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~---~~l~~~dl~tg 478 (789)
+..+|+++|+.++..+.++.+. ....+.|+|||+.|+|.+...+. ..||.+|++++
T Consensus 356 ~~~~i~~~d~~~~~~~~lt~~~---------------------~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 356 GQFSIGVMKPDGSGERILTSGF---------------------LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred CceEEEEEECCCCceEeccCCC---------------------CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 2357999998765544333211 13467899999999998876554 58999999888
Q ss_pred cEEEecCCCCCceeEEeee
Q 003886 479 ELLRITPAESNFSWSLLTL 497 (789)
Q Consensus 479 ~~~~lt~~~~~~~~~~~s~ 497 (789)
+.++++. .+....+.|++
T Consensus 415 ~~~~l~~-~~~~~~p~Wsp 432 (435)
T PRK05137 415 NEREVPT-PGDASDPAWSP 432 (435)
T ss_pred ceEEccC-CCCccCcccCC
Confidence 8887764 33334444543
No 9
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.93 E-value=4.3e-24 Score=236.76 Aligned_cols=277 Identities=16% Similarity=0.180 Sum_probs=199.4
Q ss_pred HHHHHhhcCccccceEEEecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCC
Q 003886 84 KLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSP 163 (789)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SP 163 (789)
.+|+.++..+.+.. .+++|+.... .++....||+.+. ++.+.++++..+ ..+..|+|||
T Consensus 169 ~i~~~ltG~~g~f~-----------~riayv~~~~---~~~~~~~l~i~d~--dG~~~~~l~~~~-----~~~~~p~wSP 227 (448)
T PRK04792 169 IVYEKLTGERGAFL-----------TRIAYVVVND---KDKYPYQLMIADY--DGYNEQMLLRSP-----EPLMSPAWSP 227 (448)
T ss_pred HHHHHhcCCCcccc-----------CEEEEEEeeC---CCCCceEEEEEeC--CCCCceEeecCC-----CcccCceECC
Confidence 45566665554444 3566776543 1234568888775 455566777665 4577899999
Q ss_pred CCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCC
Q 003886 164 SGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTK 242 (789)
Q Consensus 164 dG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~ 242 (789)
||++|+|++..+ +..++|.++ .+++..+++..+... ..+.|||||++|+|+....
T Consensus 228 DG~~La~~s~~~-g~~~L~~~dl~tg~~~~lt~~~g~~----------~~~~wSPDG~~La~~~~~~------------- 283 (448)
T PRK04792 228 DGRKLAYVSFEN-RKAEIFVQDIYTQVREKVTSFPGIN----------GAPRFSPDGKKLALVLSKD------------- 283 (448)
T ss_pred CCCEEEEEEecC-CCcEEEEEECCCCCeEEecCCCCCc----------CCeeECCCCCEEEEEEeCC-------------
Confidence 999999998764 567888888 566666665544332 5789999999999975432
Q ss_pred CCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCc
Q 003886 243 GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSET 322 (789)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~ 322 (789)
+..+||++|+++++.+++ +........+.|||||+. |+|++.+.+
T Consensus 284 ----------------------------g~~~Iy~~dl~tg~~~~l--t~~~~~~~~p~wSpDG~~----I~f~s~~~g- 328 (448)
T PRK04792 284 ----------------------------GQPEIYVVDIATKALTRI--TRHRAIDTEPSWHPDGKS----LIFTSERGG- 328 (448)
T ss_pred ----------------------------CCeEEEEEECCCCCeEEC--ccCCCCccceEECCCCCE----EEEEECCCC-
Confidence 346899999999999988 444445668999999999 999985332
Q ss_pred eeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccc
Q 003886 323 RKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 402 (789)
Q Consensus 323 ~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~ 402 (789)
..+||++|+ ++++.++|+........|+|||||++|+|.+... +
T Consensus 329 -----------~~~Iy~~dl-----------------~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~--------g 372 (448)
T PRK04792 329 -----------KPQIYRVNL-----------------ASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTN--------G 372 (448)
T ss_pred -----------CceEEEEEC-----------------CCCCEEEEecCCCCCcCeeECCCCCEEEEEEecC--------C
Confidence 237999998 7788888875544456799999999999987653 3
Q ss_pred cceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEE
Q 003886 403 TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 482 (789)
Q Consensus 403 ~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~ 482 (789)
..+|+++|+.++..+.++.... ...+.|+|||+.|+|++..++...||.++.+++..++
T Consensus 373 ~~~I~~~dl~~g~~~~lt~~~~---------------------d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~ 431 (448)
T PRK04792 373 KFNIARQDLETGAMQVLTSTRL---------------------DESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKAR 431 (448)
T ss_pred ceEEEEEECCCCCeEEccCCCC---------------------CCCceECCCCCEEEEEEecCCceEEEEEECCCCceEE
Confidence 4579999998876554432210 1245799999999999988888899999997777777
Q ss_pred ecCCCCCceeEEeee
Q 003886 483 ITPAESNFSWSLLTL 497 (789)
Q Consensus 483 lt~~~~~~~~~~~s~ 497 (789)
++...+....+.|+|
T Consensus 432 l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 432 LPAGQGEVKSPAWSP 446 (448)
T ss_pred CcCCCCCcCCCccCC
Confidence 765544444445554
No 10
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.93 E-value=3.8e-24 Score=237.58 Aligned_cols=263 Identities=15% Similarity=0.129 Sum_probs=193.0
Q ss_pred ceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cC
Q 003886 109 TQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQ 187 (789)
Q Consensus 109 ~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~ 187 (789)
++|+|+.... ..++.+..||+++. ++.+.++++... ..+..|+|||||++|+|++..+ +..+++.++ .+
T Consensus 168 ~~ia~v~~~~--~~~~~~~~l~i~D~--~g~~~~~lt~~~-----~~v~~p~wSpDg~~la~~s~~~-~~~~l~~~dl~~ 237 (433)
T PRK04922 168 TRIAYVTVSG--AGGAMRYALQVADS--DGYNPQTILRSA-----EPILSPAWSPDGKKLAYVSFER-GRSAIYVQDLAT 237 (433)
T ss_pred ceEEEEEEeC--CCCCceEEEEEECC--CCCCceEeecCC-----CccccccCCCCCCEEEEEecCC-CCcEEEEEECCC
Confidence 4677876543 22345678999876 455667777654 4578899999999999998764 567788877 56
Q ss_pred CceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCccccc
Q 003886 188 SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY 267 (789)
Q Consensus 188 ~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~ 267 (789)
++..+++..+... ..++|||||++|+|.....
T Consensus 238 g~~~~l~~~~g~~----------~~~~~SpDG~~l~~~~s~~-------------------------------------- 269 (433)
T PRK04922 238 GQRELVASFRGIN----------GAPSFSPDGRRLALTLSRD-------------------------------------- 269 (433)
T ss_pred CCEEEeccCCCCc----------cCceECCCCCEEEEEEeCC--------------------------------------
Confidence 6666665543322 5789999999999976432
Q ss_pred CCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccc
Q 003886 268 AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 347 (789)
Q Consensus 268 ~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 347 (789)
+..+||++|+++++.+++ +........+.|||||++ |+|++++.+ ..+||.+++
T Consensus 270 ---g~~~Iy~~d~~~g~~~~l--t~~~~~~~~~~~spDG~~----l~f~sd~~g------------~~~iy~~dl----- 323 (433)
T PRK04922 270 ---GNPEIYVMDLGSRQLTRL--TNHFGIDTEPTWAPDGKS----IYFTSDRGG------------RPQIYRVAA----- 323 (433)
T ss_pred ---CCceEEEEECCCCCeEEC--ccCCCCccceEECCCCCE----EEEEECCCC------------CceEEEEEC-----
Confidence 346899999999999888 443334567899999999 999985332 237999998
Q ss_pred hhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEE
Q 003886 348 EASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 427 (789)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~ 427 (789)
++++.++|+........|+|||||++|+|.+... +..+|+++|+.++..+.++.+.
T Consensus 324 ------------~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~--------~~~~I~v~d~~~g~~~~Lt~~~---- 379 (433)
T PRK04922 324 ------------SGGSAERLTFQGNYNARASVSPDGKKIAMVHGSG--------GQYRIAVMDLSTGSVRTLTPGS---- 379 (433)
T ss_pred ------------CCCCeEEeecCCCCccCEEECCCCCEEEEEECCC--------CceeEEEEECCCCCeEECCCCC----
Confidence 6777888876555566899999999999987643 2357999999887665544321
Q ss_pred eeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEee
Q 003886 428 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLT 496 (789)
Q Consensus 428 ~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s 496 (789)
....+.|+|||+.|+|.+...+...||.++++++..++++...+....+.|+
T Consensus 380 -----------------~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~~~g~~~~p~ws 431 (433)
T PRK04922 380 -----------------LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLVSADGEVREPAWS 431 (433)
T ss_pred -----------------CCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEcccCCCCCCCCccC
Confidence 1135689999999999998888889999999887777787554433434444
No 11
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.93 E-value=7.6e-24 Score=234.28 Aligned_cols=260 Identities=15% Similarity=0.175 Sum_probs=189.4
Q ss_pred ceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cC
Q 003886 109 TQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQ 187 (789)
Q Consensus 109 ~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~ 187 (789)
.+++|.... .....||.++. ++...++++... ..+..|+|||||++|+|++..+ +..++|..+ .+
T Consensus 164 ~~iayv~~~------~~~~~L~~~D~--dG~~~~~l~~~~-----~~v~~p~wSPDG~~la~~s~~~-~~~~I~~~dl~~ 229 (427)
T PRK02889 164 TRIAYVIKT------GNRYQLQISDA--DGQNAQSALSSP-----EPIISPAWSPDGTKLAYVSFES-KKPVVYVHDLAT 229 (427)
T ss_pred cEEEEEEcc------CCccEEEEECC--CCCCceEeccCC-----CCcccceEcCCCCEEEEEEccC-CCcEEEEEECCC
Confidence 468887532 23568998875 455566676554 4577899999999999998764 566788877 56
Q ss_pred CceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCccccc
Q 003886 188 SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY 267 (789)
Q Consensus 188 ~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~ 267 (789)
++..+++...... ..+.|||||++|+|.....
T Consensus 230 g~~~~l~~~~g~~----------~~~~~SPDG~~la~~~~~~-------------------------------------- 261 (427)
T PRK02889 230 GRRRVVANFKGSN----------SAPAWSPDGRTLAVALSRD-------------------------------------- 261 (427)
T ss_pred CCEEEeecCCCCc----------cceEECCCCCEEEEEEccC--------------------------------------
Confidence 6666665544333 6799999999999975432
Q ss_pred CCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccc
Q 003886 268 AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 347 (789)
Q Consensus 268 ~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 347 (789)
+..+||++|+.+++.+++ +........+.|||||++ |+|++++.+ ..+||.+++
T Consensus 262 ---g~~~Iy~~d~~~~~~~~l--t~~~~~~~~~~wSpDG~~----l~f~s~~~g------------~~~Iy~~~~----- 315 (427)
T PRK02889 262 ---GNSQIYTVNADGSGLRRL--TQSSGIDTEPFFSPDGRS----IYFTSDRGG------------APQIYRMPA----- 315 (427)
T ss_pred ---CCceEEEEECCCCCcEEC--CCCCCCCcCeEEcCCCCE----EEEEecCCC------------CcEEEEEEC-----
Confidence 347899999999988888 444444567899999999 999875332 237999997
Q ss_pred hhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEE
Q 003886 348 EASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 427 (789)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~ 427 (789)
+++..++++........|.|||||++|+|.+... +..+|+++|+.+++.+.++...
T Consensus 316 ------------~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~--------g~~~I~v~d~~~g~~~~lt~~~---- 371 (427)
T PRK02889 316 ------------SGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVG--------GAFKLYVQDLATGQVTALTDTT---- 371 (427)
T ss_pred ------------CCCceEEEecCCCCcCceEECCCCCEEEEEEccC--------CcEEEEEEECCCCCeEEccCCC----
Confidence 6677777775545566899999999999998654 2357999999887665444221
Q ss_pred eeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeee
Q 003886 428 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTL 497 (789)
Q Consensus 428 ~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~ 497 (789)
....+.|+|||+.|+|.+..++...|+.++++++..+++....+....+.|+|
T Consensus 372 -----------------~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 372 -----------------RDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred -----------------CccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEeecCCCCCCCCccCC
Confidence 11356899999999999998888899999996655666654444444445554
No 12
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.93 E-value=1.6e-23 Score=228.61 Aligned_cols=255 Identities=10% Similarity=0.014 Sum_probs=186.4
Q ss_pred eEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCe-EEEEecCCCCCCeEEEEe-cC
Q 003886 110 QAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSK-LLVVRNPENESPIQFELW-SQ 187 (789)
Q Consensus 110 ~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~-la~~~~~~~~~~~~~~i~-~~ 187 (789)
+++|..... +.+.+.||+.+. ++.+.++++.+. ....|.|||||++ ++|++..+ +.+++|.++ .+
T Consensus 156 r~~~v~~~~----~~~~~~l~~~d~--dg~~~~~~~~~~------~~~~p~wSpDG~~~i~y~s~~~-~~~~Iyv~dl~t 222 (419)
T PRK04043 156 RKVVFSKYT----GPKKSNIVLADY--TLTYQKVIVKGG------LNIFPKWANKEQTAFYYTSYGE-RKPTLYKYNLYT 222 (419)
T ss_pred eEEEEEEcc----CCCcceEEEECC--CCCceeEEccCC------CeEeEEECCCCCcEEEEEEccC-CCCEEEEEECCC
Confidence 566665421 124689999886 455566666543 3668999999997 66666653 467899998 67
Q ss_pred CceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCccccc
Q 003886 188 SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY 267 (789)
Q Consensus 188 ~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~ 267 (789)
++.++++...+.. ..+.|||||++|+|.....
T Consensus 223 g~~~~lt~~~g~~----------~~~~~SPDG~~la~~~~~~-------------------------------------- 254 (419)
T PRK04043 223 GKKEKIASSQGML----------VVSDVSKDGSKLLLTMAPK-------------------------------------- 254 (419)
T ss_pred CcEEEEecCCCcE----------EeeEECCCCCEEEEEEccC--------------------------------------
Confidence 8888887644333 4688999999999986532
Q ss_pred CCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccc
Q 003886 268 AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 347 (789)
Q Consensus 268 ~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 347 (789)
++.+||++|+++++.++| +........+.|||||++ |+|++++.+ ..+||++|+
T Consensus 255 ---g~~~Iy~~dl~~g~~~~L--T~~~~~d~~p~~SPDG~~----I~F~Sdr~g------------~~~Iy~~dl----- 308 (419)
T PRK04043 255 ---GQPDIYLYDTNTKTLTQI--TNYPGIDVNGNFVEDDKR----IVFVSDRLG------------YPNIFMKKL----- 308 (419)
T ss_pred ---CCcEEEEEECCCCcEEEc--ccCCCccCccEECCCCCE----EEEEECCCC------------CceEEEEEC-----
Confidence 347899999999999999 444434457899999999 999996432 248999999
Q ss_pred hhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEE
Q 003886 348 EASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 427 (789)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~ 427 (789)
++++.++++.... ..+.|||||++|+|++.......+ ....+|+++|+++++.+.++....
T Consensus 309 ------------~~g~~~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~~~~~--~~~~~I~v~d~~~g~~~~LT~~~~--- 369 (419)
T PRK04043 309 ------------NSGSVEQVVFHGK--NNSSVSTYKNYIVYSSRETNNEFG--KNTFNLYLISTNSDYIRRLTANGV--- 369 (419)
T ss_pred ------------CCCCeEeCccCCC--cCceECCCCCEEEEEEcCCCcccC--CCCcEEEEEECCCCCeEECCCCCC---
Confidence 7888888886532 247999999999999875421100 123689999999887766654310
Q ss_pred eeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC
Q 003886 428 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 488 (789)
Q Consensus 428 ~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~ 488 (789)
...+.|+|||+.|+|.+..++...|+.+++++....++....+
T Consensus 370 ------------------~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~~~g 412 (419)
T PRK04043 370 ------------------NQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPLKVG 412 (419)
T ss_pred ------------------cCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEeecCCC
Confidence 1246899999999999888888899999997777777765444
No 13
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.92 E-value=3.7e-23 Score=230.40 Aligned_cols=264 Identities=15% Similarity=0.175 Sum_probs=191.1
Q ss_pred ceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cC
Q 003886 109 TQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQ 187 (789)
Q Consensus 109 ~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~ 187 (789)
++++|+....+ ..+.+..||+.+. ++.+.++++... ..+..|+|||||++|+|++..+ +..++|.++ .+
T Consensus 163 ~~ia~v~~~~~--~~~~~~~l~~~d~--~g~~~~~l~~~~-----~~~~~p~wSpDG~~la~~s~~~-~~~~l~~~~l~~ 232 (430)
T PRK00178 163 TRILYVTAERF--SVNTRYTLQRSDY--DGARAVTLLQSR-----EPILSPRWSPDGKRIAYVSFEQ-KRPRIFVQNLDT 232 (430)
T ss_pred eeEEEEEeeCC--CCCcceEEEEECC--CCCCceEEecCC-----CceeeeeECCCCCEEEEEEcCC-CCCEEEEEECCC
Confidence 46888765433 1234557888775 445566676554 3478899999999999998765 566888888 56
Q ss_pred CceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCccccc
Q 003886 188 SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY 267 (789)
Q Consensus 188 ~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~ 267 (789)
++.++++...... ..++|||||++|+|.....
T Consensus 233 g~~~~l~~~~g~~----------~~~~~SpDG~~la~~~~~~-------------------------------------- 264 (430)
T PRK00178 233 GRREQITNFEGLN----------GAPAWSPDGSKLAFVLSKD-------------------------------------- 264 (430)
T ss_pred CCEEEccCCCCCc----------CCeEECCCCCEEEEEEccC--------------------------------------
Confidence 6666665543322 5799999999999976432
Q ss_pred CCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccc
Q 003886 268 AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 347 (789)
Q Consensus 268 ~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 347 (789)
+..+||++|+++++.+++ +........+.|||||+. |+|++++.+ ..+||.+++
T Consensus 265 ---g~~~Iy~~d~~~~~~~~l--t~~~~~~~~~~~spDg~~----i~f~s~~~g------------~~~iy~~d~----- 318 (430)
T PRK00178 265 ---GNPEIYVMDLASRQLSRV--TNHPAIDTEPFWGKDGRT----LYFTSDRGG------------KPQIYKVNV----- 318 (430)
T ss_pred ---CCceEEEEECCCCCeEEc--ccCCCCcCCeEECCCCCE----EEEEECCCC------------CceEEEEEC-----
Confidence 236899999999999888 444445567899999999 999985332 237999998
Q ss_pred hhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEE
Q 003886 348 EASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 427 (789)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~ 427 (789)
.+++.++++........|.|||||++|+|.+... +..+|+++|+.+++.+.++....
T Consensus 319 ------------~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~--------~~~~l~~~dl~tg~~~~lt~~~~--- 375 (430)
T PRK00178 319 ------------NGGRAERVTFVGNYNARPRLSADGKTLVMVHRQD--------GNFHVAAQDLQRGSVRILTDTSL--- 375 (430)
T ss_pred ------------CCCCEEEeecCCCCccceEECCCCCEEEEEEccC--------CceEEEEEECCCCCEEEccCCCC---
Confidence 6777888876555567899999999999998654 23579999998876655443210
Q ss_pred eeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeee
Q 003886 428 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTL 497 (789)
Q Consensus 428 ~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~ 497 (789)
...+.|+|||+.|+|++...+...||.++++++..+++....+....+.|++
T Consensus 376 ------------------~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 376 ------------------DESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred ------------------CCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECcCCCCCcCCCccCC
Confidence 1245899999999999988888899999997766667764444333344443
No 14
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=9.7e-23 Score=216.49 Aligned_cols=265 Identities=20% Similarity=0.238 Sum_probs=202.6
Q ss_pred cCCEEEEEEeCCCCCCeEEEEeecccCCCceeeeeccCCCCCCCchhhhhccccCceeeEeeecccccceeecCCCeeEE
Q 003886 498 DGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFE 577 (789)
Q Consensus 498 dg~~l~~~~ss~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~g~~l~ 577 (789)
+...+.|..+|+.+|+.||.+|+..+.....+ ..++...+ ..++...+...++ .+.+.||..++
T Consensus 392 ~~~~~~f~~sS~l~P~~iy~yDl~~~~~e~~v-f~e~~~~l--------pg~~~s~y~~~r~-------~~~SkDGt~VP 455 (712)
T KOG2237|consen 392 KSSTIRFQFSSFLTPGSIYDYDLANGKPEPSV-FREITVVL--------PGFDASDYVVERI-------EVSSKDGTKVP 455 (712)
T ss_pred CCceEEEEEeccCCCCeEEEeeccCCCCCCcc-eeeecccc--------CcccccceEEEEE-------EEecCCCCccc
Confidence 45789999999999999999999866411111 12222111 1122223344444 56788999999
Q ss_pred EEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHH
Q 003886 578 AIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLT 657 (789)
Q Consensus 578 ~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~ 657 (789)
..++.-+..+..++.|++++.||+.+......|...-..|..+|++....|.||++++|+.|++......-...++|+++
T Consensus 456 M~Iv~kk~~k~dg~~P~LLygYGay~isl~p~f~~srl~lld~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfia 535 (712)
T KOG2237|consen 456 MFIVYKKDIKLDGSKPLLLYGYGAYGISLDPSFRASRLSLLDRGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFIA 535 (712)
T ss_pred eEEEEechhhhcCCCceEEEEecccceeeccccccceeEEEecceEEEEEeeccCcccccchhhccchhhhcccHHHHHH
Confidence 99988666666779999999999888766667776656667799999999999999999999988766666667999999
Q ss_pred HHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCC
Q 003886 658 AIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTES 737 (789)
Q Consensus 658 ~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (789)
+++||+++++..++++++.|+|.||.++..++.++|++|+|+|+..|+.|+...+..+..+-|.. .++. +.
T Consensus 536 ~AeyLve~gyt~~~kL~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL~t~~~tilplt~s--d~ee-----~g-- 606 (712)
T KOG2237|consen 536 CAEYLVENGYTQPSKLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDVLNTHKDTILPLTTS--DYEE-----WG-- 606 (712)
T ss_pred HHHHHHHcCCCCccceeEecccCccchhHHHhccCchHhhhhhhcCcceehhhhhccCccccchh--hhcc-----cC--
Confidence 99999999999999999999999999999999999999999999999999887776666666542 1111 11
Q ss_pred CChhhHHHHHhcCccccCCCCC----CC-EEEEEeCCCCCCChHHHHHHHHHCCCC
Q 003886 738 PSVEDLTRFHSKSPISHISKVK----TP-TIFLLGAQDLRVPVSNGLQVIYHIPFS 788 (789)
Q Consensus 738 ~~~~~~~~~~~~sp~~~~~~i~----~P-~Lii~G~~D~~vp~~~~~~l~~~l~~~ 788 (789)
..++.+.+..++|+..+++++ .| +||..+.+|.+|++.++.++.++||.+
T Consensus 607 -~p~~~~~~~~i~~y~pv~~i~~q~~YPS~lvtta~hD~RV~~~~~~K~vAklre~ 661 (712)
T KOG2237|consen 607 -NPEDFEDLIKISPYSPVDNIKKQVQYPSMLVTTADHDDRVGPLESLKWVAKLREA 661 (712)
T ss_pred -ChhhhhhhheecccCccCCCchhccCcceEEeeccCCCcccccchHHHHHHHHHH
Confidence 123444555555555555443 56 899999999999999999999988753
No 15
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=99.92 E-value=2e-22 Score=213.44 Aligned_cols=305 Identities=17% Similarity=0.206 Sum_probs=230.7
Q ss_pred CCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCC-CCceeEEeeecCCEEEEEEeCCCCCCeEEEEeecccCCC
Q 003886 448 SNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE-SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANK 526 (789)
Q Consensus 448 ~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~-~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~~~~ 526 (789)
.+.+.+| +++...-.+-...+...+..+-..+.|.-.. +.......+.+|+.+++..++.++|+.+++.++.+.+ .
T Consensus 301 ~v~tt~~--~~va~~l~nv~~~l~v~~~~g~~~~~v~l~~~ga~~~~~~~~~g~ev~l~~t~F~tP~~~~r~~~~~~e-L 377 (648)
T COG1505 301 QVVTTKD--KLVAGTLDNVSGRLEVYDLKGERIEEVELPPPGALGMGSADKDGDEVFLAFTSFTTPSTLYRLDLFGGE-L 377 (648)
T ss_pred eeEEEcC--eEEeeeehhccceEEEeccCceEeeecccCCccceeeccCCCCCcEEEEEeecccCCCceEEEecCCce-e
Confidence 3445544 3444443333335666666443444443322 2222223445788999999999999999999987654 1
Q ss_pred ceeeeeccCCCCCCCchhhhhccccCceeeEeeecccccceeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC
Q 003886 527 GTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS 606 (789)
Q Consensus 527 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~ 606 (789)
. .|.+++ ..++..++++.+. ..++.||+.|+.+++. ++.+.. +.|++|+.|||..-..
T Consensus 378 e-----~ik~~p--------~~FDa~~~~veQ~-------~atSkDGT~IPYFiv~-K~~~~d-~~pTll~aYGGF~vsl 435 (648)
T COG1505 378 E-----VIREQP--------VQFDADNYEVEQF-------FATSKDGTRIPYFIVR-KGAKKD-ENPTLLYAYGGFNISL 435 (648)
T ss_pred h-----hhhhcc--------CCcCccCceEEEE-------EEEcCCCccccEEEEe-cCCcCC-CCceEEEecccccccc
Confidence 1 111111 1234445555554 5688999999999998 776666 8999999999988777
Q ss_pred chhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHH
Q 003886 607 LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTT 686 (789)
Q Consensus 607 ~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~ 686 (789)
.+.|......+.++|.+.+..|.||.+.||.+|+++....-...-++|..++++.|+++++..+++++|.|.|-||.++.
T Consensus 436 tP~fs~~~~~WLerGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AVaedLi~rgitspe~lgi~GgSNGGLLvg 515 (648)
T COG1505 436 TPRFSGSRKLWLERGGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVG 515 (648)
T ss_pred CCccchhhHHHHhcCCeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCCCHHHhhhccCCCCceEEE
Confidence 78888877889999999999999999999999998765555555689999999999999999999999999999999999
Q ss_pred HHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCC-CC-CCEEE
Q 003886 687 HLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISK-VK-TPTIF 764 (789)
Q Consensus 687 ~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~-i~-~P~Li 764 (789)
.++.++|+.|.|+|+..|+.||..+.....-..|. ..|......++.....++||+.+++. .+ .|+||
T Consensus 516 ~alTQrPelfgA~v~evPllDMlRYh~l~aG~sW~----------~EYG~Pd~P~d~~~l~~YSPy~nl~~g~kYP~~LI 585 (648)
T COG1505 516 AALTQRPELFGAAVCEVPLLDMLRYHLLTAGSSWI----------AEYGNPDDPEDRAFLLAYSPYHNLKPGQKYPPTLI 585 (648)
T ss_pred eeeccChhhhCceeeccchhhhhhhcccccchhhH----------hhcCCCCCHHHHHHHHhcCchhcCCccccCCCeEE
Confidence 99999999999999999999998775444333332 33444445677788889999999875 44 56999
Q ss_pred EEeCCCCCCChHHHHHHHHHCCC
Q 003886 765 LLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 765 i~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
-.+..|.+|+|.|+++++.+|+.
T Consensus 586 TTs~~DDRVHPaHarKfaa~L~e 608 (648)
T COG1505 586 TTSLHDDRVHPAHARKFAAKLQE 608 (648)
T ss_pred EcccccccccchHHHHHHHHHHh
Confidence 99999999999999999999875
No 16
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=99.91 E-value=3.6e-25 Score=221.97 Aligned_cols=169 Identities=33% Similarity=0.539 Sum_probs=140.1
Q ss_pred hhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHH
Q 003886 609 SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHL 688 (789)
Q Consensus 609 ~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~ 688 (789)
+|....++|+++||+|+.+|+||++|+|.++.....+.++..+++|+.++++++++++.+|++||+|+|+|+||++++++
T Consensus 2 ~f~~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~ 81 (213)
T PF00326_consen 2 SFNWNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLA 81 (213)
T ss_dssp --SHHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHH
T ss_pred eeeHHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchh
Confidence 35567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCC--CCCCEEEEE
Q 003886 689 IGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISK--VKTPTIFLL 766 (789)
Q Consensus 689 ~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~--i~~P~Lii~ 766 (789)
+.++|++|+++|+.+|+.++..+....+. +....... + .. .+...+.|...+|+..+.+ +++|+||+|
T Consensus 82 ~~~~~~~f~a~v~~~g~~d~~~~~~~~~~--~~~~~~~~------~-~~-~~~~~~~~~~~s~~~~~~~~~~~~P~li~h 151 (213)
T PF00326_consen 82 ATQHPDRFKAAVAGAGVSDLFSYYGTTDI--YTKAEYLE------Y-GD-PWDNPEFYRELSPISPADNVQIKPPVLIIH 151 (213)
T ss_dssp HHHTCCGSSEEEEESE-SSTTCSBHHTCC--HHHGHHHH------H-SS-TTTSHHHHHHHHHGGGGGGCGGGSEEEEEE
T ss_pred hcccceeeeeeeccceecchhcccccccc--cccccccc------c-Cc-cchhhhhhhhhccccccccccCCCCEEEEc
Confidence 99999999999999999998776554433 11100000 0 11 2235667888889988888 899999999
Q ss_pred eCCCCCCChHHHHHHHHHCCC
Q 003886 767 GAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 767 G~~D~~vp~~~~~~l~~~l~~ 787 (789)
|++|.+||++++.+++++|++
T Consensus 152 G~~D~~Vp~~~s~~~~~~L~~ 172 (213)
T PF00326_consen 152 GENDPRVPPSQSLRLYNALRK 172 (213)
T ss_dssp ETTBSSSTTHHHHHHHHHHHH
T ss_pred cCCCCccCHHHHHHHHHHHHh
Confidence 999999999999999999874
No 17
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.90 E-value=9e-23 Score=220.04 Aligned_cols=330 Identities=16% Similarity=0.173 Sum_probs=214.9
Q ss_pred CCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 003886 105 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 184 (789)
Q Consensus 105 spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i 184 (789)
||||+.+.+..+....-.......+|++++.+ ++..+++... .....+.|||||++|||+++.+ +|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~--~~~~~l~~~~-----~~~~~~~~sP~g~~~~~v~~~n-----ly~~ 68 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIET--GEITPLTPPP-----PKLQDAKWSPDGKYIAFVRDNN-----LYLR 68 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTT--TEEEESS-EE-----TTBSEEEE-SSSTEEEEEETTE-----EEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCC--CceEECcCCc-----cccccceeecCCCeeEEEecCc-----eEEE
Confidence 79999999977755434445667888988744 3445554331 4578999999999999999875 8888
Q ss_pred e-cCCceeEEEecC-----CCccccccCCC---cccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCC
Q 003886 185 W-SQSQLEKEFHVP-----QTVHGSVYADG---WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKG 255 (789)
Q Consensus 185 ~-~~~~~~~~~~~~-----~~~~g~v~~d~---~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (789)
. .+++..+++... .+..++||.++ ....+.|||||++|||...+...........+.......+....+
T Consensus 69 ~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~-- 146 (353)
T PF00930_consen 69 DLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESI-- 146 (353)
T ss_dssp SSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEE--
T ss_pred ECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCccccc--
Confidence 7 566667777532 23344566554 346899999999999998876543222111111111000000000
Q ss_pred cceeeCCcccccCCccCceEEEEEccCCceEeccCC----CCCCccceEEEeeCCCCCccEEEEEe-ecCCceeeeeeee
Q 003886 256 QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGI----PKSLSVGQVVWAPLNEGLHQYLVFVG-WSSETRKLGIKYC 330 (789)
Q Consensus 256 ~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~----~~~~~~~~~~wSPDg~~~~~~l~f~~-~~~~~~~~g~~~~ 330 (789)
.| |.-|.. .....|+++|+++++...+... +.+.....+.|++|++. |++.- ++..
T Consensus 147 --~Y-Pk~G~~---np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~----l~~~~~nR~q--------- 207 (353)
T PF00930_consen 147 --RY-PKAGDP---NPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKR----LWVQWLNRDQ--------- 207 (353)
T ss_dssp --E---BTTS------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEE----EEEEEEETTS---------
T ss_pred --cc-CCCCCc---CCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcE----EEEEEcccCC---------
Confidence 01 111111 1345799999999987655311 23446779999999996 66543 3322
Q ss_pred ccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecC----CCC-CccCcceec-CCCCEEEEEecCCCCCCCCccccc
Q 003886 331 YNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT----ESI-SSAFFPRFS-PDGKFLVFLSAKSSVDSGAHSATD 404 (789)
Q Consensus 331 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt----~~~-~~~~~p~~S-pDG~~la~~s~~~~~~~g~~~~~~ 404 (789)
+...|+.+|+ .++..+.+. ... .....+.|. +||..+++++.++ +..
T Consensus 208 --~~~~l~~~d~-----------------~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~--------G~~ 260 (353)
T PF00930_consen 208 --NRLDLVLCDA-----------------STGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD--------GYR 260 (353)
T ss_dssp --TEEEEEEEEE-----------------CTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT--------SSE
T ss_pred --CEEEEEEEEC-----------------CCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC--------CCc
Confidence 2346888887 445443332 111 123455665 9999999999865 467
Q ss_pred eeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEe--CCeEEEEEEECC-CCcEE
Q 003886 405 SLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW--GSSQVIISVNVS-SGELL 481 (789)
Q Consensus 405 ~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~--~~~~~l~~~dl~-tg~~~ 481 (789)
+|++++..++..+++|.+..+|..+ ..|+++++.|||++.. ....+||+++++ +|+++
T Consensus 261 hly~~~~~~~~~~~lT~G~~~V~~i-------------------~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~ 321 (353)
T PF00930_consen 261 HLYLYDLDGGKPRQLTSGDWEVTSI-------------------LGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPK 321 (353)
T ss_dssp EEEEEETTSSEEEESS-SSS-EEEE-------------------EEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEE
T ss_pred EEEEEcccccceeccccCceeeccc-------------------ceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeE
Confidence 9999999998888899887776543 3688999999999986 357899999999 99999
Q ss_pred EecCCCCCceeEEeeecCCEEEEEEeCCCCCC
Q 003886 482 RITPAESNFSWSLLTLDGDNIIAVSSSPVDVP 513 (789)
Q Consensus 482 ~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~ 513 (789)
+||...+......||++|++++..+++++.|+
T Consensus 322 ~LT~~~~~~~~~~~Spdg~y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 322 CLTCEDGDHYSASFSPDGKYYVDTYSGPDTPP 353 (353)
T ss_dssp ESSTTSSTTEEEEE-TTSSEEEEEEESSSSCE
T ss_pred eccCCCCCceEEEECCCCCEEEEEEcCCCCCC
Confidence 99998875546799999999999999999985
No 18
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=7.4e-22 Score=218.79 Aligned_cols=271 Identities=13% Similarity=0.153 Sum_probs=186.4
Q ss_pred HHHHHHhhcCccccceEEEecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeC
Q 003886 83 SKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPS 162 (789)
Q Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~S 162 (789)
-.+|+.++..+.+.. ++|+|+....+ +.....||+++. ++.+.+.++.+. ..+..|+||
T Consensus 154 d~i~~~ltg~~g~f~-----------~ria~v~~~~~---~~~~~~i~i~d~--dg~~~~~lt~~~-----~~v~~p~wS 212 (429)
T PRK01742 154 DEVFEKLTAIRGAFR-----------TRIAYVVQKNG---GSQPYEVRVADY--DGFNQFIVNRSS-----QPLMSPAWS 212 (429)
T ss_pred HHHHHHHcCCCCccC-----------CEEEEEEEEcC---CCceEEEEEECC--CCCCceEeccCC-----CccccceEc
Confidence 345555555544333 57778876543 234578999886 344555666544 347899999
Q ss_pred CCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCC
Q 003886 163 PSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGST 241 (789)
Q Consensus 163 PdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~ 241 (789)
|||++|||++..+ +..+++..+ .+++.+++....... ..++|||||++|+|.....
T Consensus 213 PDG~~la~~s~~~-~~~~i~i~dl~tg~~~~l~~~~g~~----------~~~~wSPDG~~La~~~~~~------------ 269 (429)
T PRK01742 213 PDGSKLAYVSFEN-KKSQLVVHDLRSGARKVVASFRGHN----------GAPAFSPDGSRLAFASSKD------------ 269 (429)
T ss_pred CCCCEEEEEEecC-CCcEEEEEeCCCCceEEEecCCCcc----------CceeECCCCCEEEEEEecC------------
Confidence 9999999998754 456777766 556555555444333 5789999999999976432
Q ss_pred CCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCC
Q 003886 242 KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSE 321 (789)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~ 321 (789)
+..+||++|+++++.+++ +........+.|||||+. |+|++++.+
T Consensus 270 -----------------------------g~~~Iy~~d~~~~~~~~l--t~~~~~~~~~~wSpDG~~----i~f~s~~~g 314 (429)
T PRK01742 270 -----------------------------GVLNIYVMGANGGTPSQL--TSGAGNNTEPSWSPDGQS----ILFTSDRSG 314 (429)
T ss_pred -----------------------------CcEEEEEEECCCCCeEee--ccCCCCcCCEEECCCCCE----EEEEECCCC
Confidence 235799999999999888 444556678999999999 999985332
Q ss_pred ceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCcc
Q 003886 322 TRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 401 (789)
Q Consensus 322 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~ 401 (789)
..+||.++. .++..+.++. .+ ..+.|||||++|++.+..
T Consensus 315 ------------~~~I~~~~~-----------------~~~~~~~l~~-~~--~~~~~SpDG~~ia~~~~~--------- 353 (429)
T PRK01742 315 ------------SPQVYRMSA-----------------SGGGASLVGG-RG--YSAQISADGKTLVMINGD--------- 353 (429)
T ss_pred ------------CceEEEEEC-----------------CCCCeEEecC-CC--CCccCCCCCCEEEEEcCC---------
Confidence 237999987 5555666643 22 468999999999997642
Q ss_pred ccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEE
Q 003886 402 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 481 (789)
Q Consensus 402 ~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~ 481 (789)
+++++|+.++..+.++... ....+.|+|||+.|++.+..++...++.++.+++..+
T Consensus 354 ---~i~~~Dl~~g~~~~lt~~~---------------------~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~ 409 (429)
T PRK01742 354 ---NVVKQDLTSGSTEVLSSTF---------------------LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKA 409 (429)
T ss_pred ---CEEEEECCCCCeEEecCCC---------------------CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceE
Confidence 3888998876554332211 1135679999999999887666666777787677777
Q ss_pred EecCCCCCceeEEeee
Q 003886 482 RITPAESNFSWSLLTL 497 (789)
Q Consensus 482 ~lt~~~~~~~~~~~s~ 497 (789)
+++...+....+.|+|
T Consensus 410 ~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 410 RLPGSDGQVKFPAWSP 425 (429)
T ss_pred EccCCCCCCCCcccCC
Confidence 7865444344455554
No 19
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=9.2e-22 Score=218.80 Aligned_cols=245 Identities=13% Similarity=0.118 Sum_probs=183.7
Q ss_pred CCCeEEEEecCCCC---CCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCC
Q 003886 164 SGSKLLVVRNPENE---SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 239 (789)
Q Consensus 164 dG~~la~~~~~~~~---~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 239 (789)
-..+|||+++..+. ..++|.++ ++...++++.....+ ..++|||||++|+|++...
T Consensus 164 f~~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~v----------~~p~wSpDG~~lay~s~~~---------- 223 (435)
T PRK05137 164 FDTRIVYVAESGPKNKRIKRLAIMDQDGANVRYLTDGSSLV----------LTPRFSPNRQEITYMSYAN---------- 223 (435)
T ss_pred CCCeEEEEEeeCCCCCcceEEEEECCCCCCcEEEecCCCCe----------EeeEECCCCCEEEEEEecC----------
Confidence 35689999875432 45777777 445556666543333 7899999999999987542
Q ss_pred CCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeec
Q 003886 240 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 319 (789)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~ 319 (789)
+..+||++|+.+|+.+++. ........+.|||||+. |+|+...
T Consensus 224 -------------------------------g~~~i~~~dl~~g~~~~l~--~~~g~~~~~~~SPDG~~----la~~~~~ 266 (435)
T PRK05137 224 -------------------------------GRPRVYLLDLETGQRELVG--NFPGMTFAPRFSPDGRK----VVMSLSQ 266 (435)
T ss_pred -------------------------------CCCEEEEEECCCCcEEEee--cCCCcccCcEECCCCCE----EEEEEec
Confidence 3478999999999988883 33334568899999999 9998742
Q ss_pred CCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCC
Q 003886 320 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 399 (789)
Q Consensus 320 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~ 399 (789)
. ...+||++|+ +++..++|+.+.+....|.|||||++|+|.+.+.
T Consensus 267 ~------------g~~~Iy~~d~-----------------~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~------ 311 (435)
T PRK05137 267 G------------GNTDIYTMDL-----------------RSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRS------ 311 (435)
T ss_pred C------------CCceEEEEEC-----------------CCCceEEccCCCCccCceeEcCCCCEEEEEECCC------
Confidence 2 2347999998 7888899998877788899999999999998764
Q ss_pred ccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCc
Q 003886 400 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 479 (789)
Q Consensus 400 ~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~ 479 (789)
+..+||++|+.++..+.++... .....+.|+|||+.|+|.....+...|+.+|++++.
T Consensus 312 --g~~~Iy~~d~~g~~~~~lt~~~--------------------~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 312 --GSPQLYVMNADGSNPRRISFGG--------------------GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG 369 (435)
T ss_pred --CCCeEEEEECCCCCeEEeecCC--------------------CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence 3458999998876554443211 012356899999999998876677889999998888
Q ss_pred EEEecCCCCCceeEEeeecCCEEEEEEeCCCCC--CeEEEEeeccc
Q 003886 480 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDV--PQVKYGYFVDK 523 (789)
Q Consensus 480 ~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p--~~i~~~~~~~~ 523 (789)
.+.++... ......|++||+.|+|+....... ..||++++.++
T Consensus 370 ~~~lt~~~-~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 370 ERILTSGF-LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred eEeccCCC-CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 77777654 344578999999999988765543 57999887654
No 20
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=1.6e-21 Score=214.45 Aligned_cols=252 Identities=15% Similarity=0.156 Sum_probs=179.7
Q ss_pred EEEeCCCCCeEEEEecCCC-----CCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCE--EEEEeecC
Q 003886 158 AVVPSPSGSKLLVVRNPEN-----ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETL--IAYVAEEP 229 (789)
Q Consensus 158 ~~~~SPdG~~la~~~~~~~-----~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~--la~~~~~~ 229 (789)
.+.++ +++|||+....+ ....+|+++ ++++.++++...... ..+.|||||++ ++|++...
T Consensus 141 ~~g~~--~~~iayv~~~~~~~~~~~~~~l~~~d~dG~~~~~lt~~~~~~----------~sP~wSPDG~~~~~~y~S~~~ 208 (428)
T PRK01029 141 VPGIS--SGKIIFSLSTTNSDTELKQGELWSVDYDGQNLRPLTQEHSLS----------ITPTWMHIGSGFPYLYVSYKL 208 (428)
T ss_pred CCccc--cCEEEEEEeeCCcccccccceEEEEcCCCCCceEcccCCCCc----------ccceEccCCCceEEEEEEccC
Confidence 34555 999999986532 145788888 566777777643333 68999999998 45565543
Q ss_pred CCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCC
Q 003886 230 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGL 309 (789)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~ 309 (789)
+.++||+.++++|+.+++ +........+.|||||++
T Consensus 209 -----------------------------------------g~~~I~~~~l~~g~~~~l--t~~~g~~~~p~wSPDG~~- 244 (428)
T PRK01029 209 -----------------------------------------GVPKIFLGSLENPAGKKI--LALQGNQLMPTFSPRKKL- 244 (428)
T ss_pred -----------------------------------------CCceEEEEECCCCCceEe--ecCCCCccceEECCCCCE-
Confidence 347999999999999888 344444567999999999
Q ss_pred ccEEEEEeecCCceeeeeeeeccCCcceEEE--ecccccchhhhhhhhcCCCCCCCeeecCCCC-CccCcceecCCCCEE
Q 003886 310 HQYLVFVGWSSETRKLGIKYCYNRPCALYAV--RVSLYKSEASELELKESSSEDLPVVNLTESI-SSAFFPRFSPDGKFL 386 (789)
Q Consensus 310 ~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~-~~~~~p~~SpDG~~l 386 (789)
|+|++...+ ..++|.. ++.. ..++..++|+... +....|+|||||++|
T Consensus 245 ---Laf~s~~~g------------~~di~~~~~~~~~--------------g~~g~~~~lt~~~~~~~~~p~wSPDG~~L 295 (428)
T PRK01029 245 ---LAFISDRYG------------NPDLFIQSFSLET--------------GAIGKPRRLLNEAFGTQGNPSFSPDGTRL 295 (428)
T ss_pred ---EEEEECCCC------------CcceeEEEeeccc--------------CCCCcceEeecCCCCCcCCeEECCCCCEE
Confidence 999984322 2256664 4410 0235677888653 456789999999999
Q ss_pred EEEecCCCCCCCCccccceeEEeecCCCC--CCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEe
Q 003886 387 VFLSAKSSVDSGAHSATDSLHRIDWPTNG--NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW 464 (789)
Q Consensus 387 a~~s~~~~~~~g~~~~~~~L~~~d~~~~~--~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~ 464 (789)
+|.+.++ +..+||++++..++ .+.++... .....+.|||||+.|+|....
T Consensus 296 af~s~~~--------g~~~ly~~~~~~~g~~~~~lt~~~--------------------~~~~~p~wSPDG~~Laf~~~~ 347 (428)
T PRK01029 296 VFVSNKD--------GRPRIYIMQIDPEGQSPRLLTKKY--------------------RNSSCPAWSPDGKKIAFCSVI 347 (428)
T ss_pred EEEECCC--------CCceEEEEECcccccceEEeccCC--------------------CCccceeECCCCCEEEEEEcC
Confidence 9998764 24579999886422 22222110 012467899999999999877
Q ss_pred CCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 465 GSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 465 ~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
.+..+|+.+|+++|+.++++..........|++||+.|+++.... ....||+.++.++
T Consensus 348 ~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~-g~~~L~~vdl~~g 405 (428)
T PRK01029 348 KGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNS-NESELYLISLITK 405 (428)
T ss_pred CCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCC-CCceEEEEECCCC
Confidence 777899999999999999987654445578999999999887654 3467888887654
No 21
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=4.6e-21 Score=209.23 Aligned_cols=239 Identities=11% Similarity=0.048 Sum_probs=176.8
Q ss_pred CeEEEEec-CCCCCCeEEEEecCCc-eeEEEecCCCccccccCCCcccceeecCCCCE-EEEEeecCCCCCCCccCCCCC
Q 003886 166 SKLLVVRN-PENESPIQFELWSQSQ-LEKEFHVPQTVHGSVYADGWFEGISWNSDETL-IAYVAEEPSPSKPTFSLGSTK 242 (789)
Q Consensus 166 ~~la~~~~-~~~~~~~~~~i~~~~~-~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~-la~~~~~~~~~~~~~~~~~~~ 242 (789)
.++||+.. ......+++.++.+|. .+.++.. . .. ..+.|||||++ ++|.+...
T Consensus 155 ~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~-~-~~---------~~p~wSpDG~~~i~y~s~~~------------- 210 (419)
T PRK04043 155 KRKVVFSKYTGPKKSNIVLADYTLTYQKVIVKG-G-LN---------IFPKWANKEQTAFYYTSYGE------------- 210 (419)
T ss_pred eeEEEEEEccCCCcceEEEECCCCCceeEEccC-C-Ce---------EeEEECCCCCcEEEEEEccC-------------
Confidence 46666665 3223567888885444 4444443 2 21 68999999997 66665432
Q ss_pred CCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCc
Q 003886 243 GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSET 322 (789)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~ 322 (789)
+.++||++|+.+|+.+++ +........+.|||||++ |+|+....
T Consensus 211 ----------------------------~~~~Iyv~dl~tg~~~~l--t~~~g~~~~~~~SPDG~~----la~~~~~~-- 254 (419)
T PRK04043 211 ----------------------------RKPTLYKYNLYTGKKEKI--ASSQGMLVVSDVSKDGSK----LLLTMAPK-- 254 (419)
T ss_pred ----------------------------CCCEEEEEECCCCcEEEE--ecCCCcEEeeEECCCCCE----EEEEEccC--
Confidence 247899999999999998 444444557889999999 99987432
Q ss_pred eeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccc
Q 003886 323 RKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 402 (789)
Q Consensus 323 ~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~ 402 (789)
...+||++|+ +++..++||...+....|.|||||++|+|.+++. +
T Consensus 255 ----------g~~~Iy~~dl-----------------~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~--------g 299 (419)
T PRK04043 255 ----------GQPDIYLYDT-----------------NTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRL--------G 299 (419)
T ss_pred ----------CCcEEEEEEC-----------------CCCcEEEcccCCCccCccEECCCCCEEEEEECCC--------C
Confidence 2348999998 7788999998876678899999999999999875 3
Q ss_pred cceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeC------CeEEEEEEECC
Q 003886 403 TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG------SSQVIISVNVS 476 (789)
Q Consensus 403 ~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~------~~~~l~~~dl~ 476 (789)
..+||++|+.+++.++++... .....|||||+.|+|..... +..+||.+|++
T Consensus 300 ~~~Iy~~dl~~g~~~rlt~~g----------------------~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~ 357 (419)
T PRK04043 300 YPNIFMKKLNSGSVEQVVFHG----------------------KNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTN 357 (419)
T ss_pred CceEEEEECCCCCeEeCccCC----------------------CcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECC
Confidence 468999999987765444211 01247999999999988654 33689999999
Q ss_pred CCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 477 SGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 477 tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
+|+.++||.... ...+.|+|||+.|+|+... ..-..|+.+++.+.
T Consensus 358 ~g~~~~LT~~~~-~~~p~~SPDG~~I~f~~~~-~~~~~L~~~~l~g~ 402 (419)
T PRK04043 358 SDYIRRLTANGV-NQFPRFSSDGGSIMFIKYL-GNQSALGIIRLNYN 402 (419)
T ss_pred CCCeEECCCCCC-cCCeEECCCCCEEEEEEcc-CCcEEEEEEecCCC
Confidence 999999998643 3357899999999998765 44456888887653
No 22
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.88 E-value=9e-21 Score=209.55 Aligned_cols=241 Identities=17% Similarity=0.157 Sum_probs=178.1
Q ss_pred CeEEEEecCCCC--CCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCC
Q 003886 166 SKLLVVRNPENE--SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTK 242 (789)
Q Consensus 166 ~~la~~~~~~~~--~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~ 242 (789)
++|||+....++ ..+++.++ +++..++++...... ..++|||||++|||++...
T Consensus 164 ~riayv~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~~----------~~p~wSPDG~~la~~s~~~------------- 220 (429)
T PRK03629 164 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPL----------MSPAWSPDGSKLAYVTFES------------- 220 (429)
T ss_pred CeEEEEEeeCCCCcceeEEEEcCCCCCCEEeecCCCce----------eeeEEcCCCCEEEEEEecC-------------
Confidence 789999864322 34677777 444556665543233 6899999999999986432
Q ss_pred CCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCc
Q 003886 243 GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSET 322 (789)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~ 322 (789)
+..+|+++|+.+|+.+.+. ........+.|||||+. |+|+....
T Consensus 221 ----------------------------g~~~i~i~dl~~G~~~~l~--~~~~~~~~~~~SPDG~~----La~~~~~~-- 264 (429)
T PRK03629 221 ----------------------------GRSALVIQTLANGAVRQVA--SFPRHNGAPAFSPDGSK----LAFALSKT-- 264 (429)
T ss_pred ----------------------------CCcEEEEEECCCCCeEEcc--CCCCCcCCeEECCCCCE----EEEEEcCC--
Confidence 3478999999999988883 33334567999999999 99986432
Q ss_pred eeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccc
Q 003886 323 RKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 402 (789)
Q Consensus 323 ~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~ 402 (789)
...+||++|+ ++++.++|+.+......|.|||||++|+|.+.+. +
T Consensus 265 ----------g~~~I~~~d~-----------------~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~--------g 309 (429)
T PRK03629 265 ----------GSLNLYVMDL-----------------ASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQA--------G 309 (429)
T ss_pred ----------CCcEEEEEEC-----------------CCCCEEEccCCCCCcCceEECCCCCEEEEEeCCC--------C
Confidence 1236999998 7788899998877788999999999999999764 2
Q ss_pred cceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEE
Q 003886 403 TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 482 (789)
Q Consensus 403 ~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~ 482 (789)
..+||++|+.++..+.++... .....+.|+|||+.|+|.+...+...||.+|+++|+.+.
T Consensus 310 ~~~Iy~~d~~~g~~~~lt~~~--------------------~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~ 369 (429)
T PRK03629 310 RPQVYKVNINGGAPQRITWEG--------------------SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV 369 (429)
T ss_pred CceEEEEECCCCCeEEeecCC--------------------CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE
Confidence 458999999876554332110 012356899999999998877777889999999999999
Q ss_pred ecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003886 483 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (789)
Q Consensus 483 lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~ 522 (789)
++.... ...+.|++||+.|++...... ...+++.++.+
T Consensus 370 Lt~~~~-~~~p~~SpDG~~i~~~s~~~~-~~~l~~~~~~G 407 (429)
T PRK03629 370 LTDTFL-DETPSIAPNGTMVIYSSSQGM-GSVLNLVSTDG 407 (429)
T ss_pred eCCCCC-CCCceECCCCCEEEEEEcCCC-ceEEEEEECCC
Confidence 986542 234689999999998886433 34577777643
No 23
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.88 E-value=1.2e-20 Score=208.72 Aligned_cols=239 Identities=17% Similarity=0.195 Sum_probs=176.8
Q ss_pred CeEEEEecCCCCCCeEEEEecCC-ceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCC
Q 003886 166 SKLLVVRNPENESPIQFELWSQS-QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGG 244 (789)
Q Consensus 166 ~~la~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~ 244 (789)
.+|||+.... +..+++.++.+| ..++++.....+ ..++|||||++|+|.+...
T Consensus 164 ~~iayv~~~~-~~~~L~~~D~dG~~~~~l~~~~~~v----------~~p~wSPDG~~la~~s~~~--------------- 217 (427)
T PRK02889 164 TRIAYVIKTG-NRYQLQISDADGQNAQSALSSPEPI----------ISPAWSPDGTKLAYVSFES--------------- 217 (427)
T ss_pred cEEEEEEccC-CccEEEEECCCCCCceEeccCCCCc----------ccceEcCCCCEEEEEEccC---------------
Confidence 6799998543 456777777444 445555433333 6899999999999986532
Q ss_pred CCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCcee
Q 003886 245 SSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRK 324 (789)
Q Consensus 245 ~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~ 324 (789)
+.++||++|+.+|+.+++. ........++|||||+. |+|+....
T Consensus 218 --------------------------~~~~I~~~dl~~g~~~~l~--~~~g~~~~~~~SPDG~~----la~~~~~~---- 261 (427)
T PRK02889 218 --------------------------KKPVVYVHDLATGRRRVVA--NFKGSNSAPAWSPDGRT----LAVALSRD---- 261 (427)
T ss_pred --------------------------CCcEEEEEECCCCCEEEee--cCCCCccceEECCCCCE----EEEEEccC----
Confidence 3478999999999988883 33334568999999999 99976432
Q ss_pred eeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccc
Q 003886 325 LGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATD 404 (789)
Q Consensus 325 ~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~ 404 (789)
...+||.+|+ +++..++|+.+.+....|.|||||++|+|.+++. +..
T Consensus 262 --------g~~~Iy~~d~-----------------~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~--------g~~ 308 (427)
T PRK02889 262 --------GNSQIYTVNA-----------------DGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRG--------GAP 308 (427)
T ss_pred --------CCceEEEEEC-----------------CCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCC--------CCc
Confidence 2347999998 6777889988776778899999999999998764 345
Q ss_pred eeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEec
Q 003886 405 SLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 484 (789)
Q Consensus 405 ~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt 484 (789)
+||.+++.++..+.++... . ....+.|||||+.|+|.+...+...|+.+|+.+|+.++++
T Consensus 309 ~Iy~~~~~~g~~~~lt~~g-------------~-------~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 309 QIYRMPASGGAAQRVTFTG-------------S-------YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT 368 (427)
T ss_pred EEEEEECCCCceEEEecCC-------------C-------CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc
Confidence 7999998765543322110 0 1235689999999999887777778999999999999998
Q ss_pred CCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeec
Q 003886 485 PAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521 (789)
Q Consensus 485 ~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~ 521 (789)
..... ..+.|++||+.|+|....... ..++..+..
T Consensus 369 ~~~~~-~~p~~spdg~~l~~~~~~~g~-~~l~~~~~~ 403 (427)
T PRK02889 369 DTTRD-ESPSFAPNGRYILYATQQGGR-SVLAAVSSD 403 (427)
T ss_pred CCCCc-cCceECCCCCEEEEEEecCCC-EEEEEEECC
Confidence 65432 456899999999998876543 567777764
No 24
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.87 E-value=3.5e-20 Score=205.59 Aligned_cols=241 Identities=16% Similarity=0.177 Sum_probs=176.4
Q ss_pred CCeEEEEecCCCC--CCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCC
Q 003886 165 GSKLLVVRNPENE--SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGST 241 (789)
Q Consensus 165 G~~la~~~~~~~~--~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~ 241 (789)
..+|||+....+. ..+++.++ ++.+.+.++...... ..+.|||||++|+|++...
T Consensus 182 ~~riayv~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~~~----------~~p~wSPDG~~La~~s~~~------------ 239 (448)
T PRK04792 182 LTRIAYVVVNDKDKYPYQLMIADYDGYNEQMLLRSPEPL----------MSPAWSPDGRKLAYVSFEN------------ 239 (448)
T ss_pred cCEEEEEEeeCCCCCceEEEEEeCCCCCceEeecCCCcc----------cCceECCCCCEEEEEEecC------------
Confidence 3678888765422 23566666 344455565544333 6899999999999986542
Q ss_pred CCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCC
Q 003886 242 KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSE 321 (789)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~ 321 (789)
+..+||++|+.+|+.+.+. ........+.|||||+. |+|+....
T Consensus 240 -----------------------------g~~~L~~~dl~tg~~~~lt--~~~g~~~~~~wSPDG~~----La~~~~~~- 283 (448)
T PRK04792 240 -----------------------------RKAEIFVQDIYTQVREKVT--SFPGINGAPRFSPDGKK----LALVLSKD- 283 (448)
T ss_pred -----------------------------CCcEEEEEECCCCCeEEec--CCCCCcCCeeECCCCCE----EEEEEeCC-
Confidence 3468999999999988883 33334457999999999 99987432
Q ss_pred ceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCcc
Q 003886 322 TRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 401 (789)
Q Consensus 322 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~ 401 (789)
...+||++|+ ++++.++|+.+......|+|||||++|+|.+.+.
T Consensus 284 -----------g~~~Iy~~dl-----------------~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~-------- 327 (448)
T PRK04792 284 -----------GQPEIYVVDI-----------------ATKALTRITRHRAIDTEPSWHPDGKSLIFTSERG-------- 327 (448)
T ss_pred -----------CCeEEEEEEC-----------------CCCCeEECccCCCCccceEECCCCCEEEEEECCC--------
Confidence 2347999998 7788899988776778999999999999998664
Q ss_pred ccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEE
Q 003886 402 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 481 (789)
Q Consensus 402 ~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~ 481 (789)
+..+||++|+.+++.+.++... . ....+.|+|||+.|+|.+...+..+||.+|+++|+.+
T Consensus 328 g~~~Iy~~dl~~g~~~~Lt~~g-----------------~---~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~ 387 (448)
T PRK04792 328 GKPQIYRVNLASGKVSRLTFEG-----------------E---QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ 387 (448)
T ss_pred CCceEEEEECCCCCEEEEecCC-----------------C---CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE
Confidence 3468999999876654332110 0 1124689999999999887777788999999999998
Q ss_pred EecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeec
Q 003886 482 RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521 (789)
Q Consensus 482 ~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~ 521 (789)
.++....+ ..+.|++||+.|++...... ...+++.+..
T Consensus 388 ~lt~~~~d-~~ps~spdG~~I~~~~~~~g-~~~l~~~~~~ 425 (448)
T PRK04792 388 VLTSTRLD-ESPSVAPNGTMVIYSTTYQG-KQVLAAVSID 425 (448)
T ss_pred EccCCCCC-CCceECCCCCEEEEEEecCC-ceEEEEEECC
Confidence 88865432 23579999999998886543 3467777764
No 25
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.86 E-value=1.3e-19 Score=201.71 Aligned_cols=254 Identities=16% Similarity=0.196 Sum_probs=181.8
Q ss_pred CceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-c
Q 003886 108 GTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-S 186 (789)
Q Consensus 108 g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~ 186 (789)
+.+++|..... +.....||+.+. ++...++++... ..+..|+|||||++|||+...+ +..+++.++ .
T Consensus 155 ~~~~~~~~~~~----~~~~~~l~~~d~--~g~~~~~l~~~~-----~~~~~p~~Spdg~~la~~~~~~-~~~~i~v~d~~ 222 (417)
T TIGR02800 155 STRIAYVSKSG----KSRRYELQVADY--DGANPQTITRSR-----EPILSPAWSPDGQKLAYVSFES-GKPEIYVQDLA 222 (417)
T ss_pred CCEEEEEEEeC----CCCcceEEEEcC--CCCCCEEeecCC-----CceecccCCCCCCEEEEEEcCC-CCcEEEEEECC
Confidence 45677875432 245678888875 444566676543 3477899999999999998665 456777776 4
Q ss_pred CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccc
Q 003886 187 QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGET 266 (789)
Q Consensus 187 ~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~ 266 (789)
+++..++....... ..+.|||||++|+|.....
T Consensus 223 ~g~~~~~~~~~~~~----------~~~~~spDg~~l~~~~~~~------------------------------------- 255 (417)
T TIGR02800 223 TGQREKVASFPGMN----------GAPAFSPDGSKLAVSLSKD------------------------------------- 255 (417)
T ss_pred CCCEEEeecCCCCc----------cceEECCCCCEEEEEECCC-------------------------------------
Confidence 55555554433222 5789999999999975432
Q ss_pred cCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEeccccc
Q 003886 267 YAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 346 (789)
Q Consensus 267 ~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 346 (789)
+..+||++|+.+++.+.+. ........+.|+|||++ |+|++.+.. ..+||.+++
T Consensus 256 ----~~~~i~~~d~~~~~~~~l~--~~~~~~~~~~~s~dg~~----l~~~s~~~g------------~~~iy~~d~---- 309 (417)
T TIGR02800 256 ----GNPDIYVMDLDGKQLTRLT--NGPGIDTEPSWSPDGKS----IAFTSDRGG------------SPQIYMMDA---- 309 (417)
T ss_pred ----CCccEEEEECCCCCEEECC--CCCCCCCCEEECCCCCE----EEEEECCCC------------CceEEEEEC----
Confidence 3468999999999888883 33334457899999999 999885332 237999998
Q ss_pred chhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeE
Q 003886 347 SEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 426 (789)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v 426 (789)
.+++.++|+........|.|||||++|+|..... +..+|+++|+.++..+.++...
T Consensus 310 -------------~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~--------~~~~i~~~d~~~~~~~~l~~~~--- 365 (417)
T TIGR02800 310 -------------DGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREG--------GGFNIAVMDLDGGGERVLTDTG--- 365 (417)
T ss_pred -------------CCCCEEEeecCCCCccCeEECCCCCEEEEEEccC--------CceEEEEEeCCCCCeEEccCCC---
Confidence 6777788887666778999999999999988653 3457999999875543332211
Q ss_pred EeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC
Q 003886 427 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 488 (789)
Q Consensus 427 ~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~ 488 (789)
....+.|+|||+.|+|....++...++.++.+++..+.++...+
T Consensus 366 ------------------~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g 409 (417)
T TIGR02800 366 ------------------LDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARLPLGNG 409 (417)
T ss_pred ------------------CCCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeECCCCCC
Confidence 12356799999999999988888888888876666666665433
No 26
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.86 E-value=7.1e-20 Score=203.39 Aligned_cols=242 Identities=14% Similarity=0.140 Sum_probs=176.4
Q ss_pred CCeEEEEecCCCC---CCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCC
Q 003886 165 GSKLLVVRNPENE---SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGS 240 (789)
Q Consensus 165 G~~la~~~~~~~~---~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~ 240 (789)
+.+|||++...++ ..+++.++ +++..++++.....+ ..++|||||++|+|++...
T Consensus 167 ~~~ia~v~~~~~~~~~~~~l~i~D~~g~~~~~lt~~~~~v----------~~p~wSpDg~~la~~s~~~----------- 225 (433)
T PRK04922 167 WTRIAYVTVSGAGGAMRYALQVADSDGYNPQTILRSAEPI----------LSPAWSPDGKKLAYVSFER----------- 225 (433)
T ss_pred cceEEEEEEeCCCCCceEEEEEECCCCCCceEeecCCCcc----------ccccCCCCCCEEEEEecCC-----------
Confidence 5679998764322 23455555 344455665543333 6899999999999986532
Q ss_pred CCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecC
Q 003886 241 TKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSS 320 (789)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~ 320 (789)
+..+||++|+.+|+.+.+. ........+.|||||+. |+|+....
T Consensus 226 ------------------------------~~~~l~~~dl~~g~~~~l~--~~~g~~~~~~~SpDG~~----l~~~~s~~ 269 (433)
T PRK04922 226 ------------------------------GRSAIYVQDLATGQRELVA--SFRGINGAPSFSPDGRR----LALTLSRD 269 (433)
T ss_pred ------------------------------CCcEEEEEECCCCCEEEec--cCCCCccCceECCCCCE----EEEEEeCC
Confidence 3478999999999988884 32334457899999999 99987432
Q ss_pred CceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCc
Q 003886 321 ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAH 400 (789)
Q Consensus 321 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~ 400 (789)
...+||++|+ .+++.++|+.+......|+|||||++|+|.+++.
T Consensus 270 ------------g~~~Iy~~d~-----------------~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~------- 313 (433)
T PRK04922 270 ------------GNPEIYVMDL-----------------GSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRG------- 313 (433)
T ss_pred ------------CCceEEEEEC-----------------CCCCeEECccCCCCccceEECCCCCEEEEEECCC-------
Confidence 2347999998 7788889988766678899999999999998764
Q ss_pred cccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcE
Q 003886 401 SATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL 480 (789)
Q Consensus 401 ~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~ 480 (789)
+..+||++|+.+++.+.++... . ....+.|||||+.|+|....++...|+.+|+.+|+.
T Consensus 314 -g~~~iy~~dl~~g~~~~lt~~g-------------~-------~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~ 372 (433)
T PRK04922 314 -GRPQIYRVAASGGSAERLTFQG-------------N-------YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV 372 (433)
T ss_pred -CCceEEEEECCCCCeEEeecCC-------------C-------CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe
Confidence 2357999999876554333211 0 123568999999999987666677899999999999
Q ss_pred EEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003886 481 LRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (789)
Q Consensus 481 ~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~ 522 (789)
+.++..... ....|++||+.+++..... .-..|+..++.+
T Consensus 373 ~~Lt~~~~~-~~p~~spdG~~i~~~s~~~-g~~~L~~~~~~g 412 (433)
T PRK04922 373 RTLTPGSLD-ESPSFAPNGSMVLYATREG-GRGVLAAVSTDG 412 (433)
T ss_pred EECCCCCCC-CCceECCCCCEEEEEEecC-CceEEEEEECCC
Confidence 988866432 3468999999999888763 335688887653
No 27
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.86 E-value=9.2e-20 Score=203.16 Aligned_cols=243 Identities=14% Similarity=0.163 Sum_probs=176.7
Q ss_pred CCCeEEEEecCCCC---CCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCC
Q 003886 164 SGSKLLVVRNPENE---SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 239 (789)
Q Consensus 164 dG~~la~~~~~~~~---~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 239 (789)
..++|||++..... ..+++.++ +++..++++...... ..++|||||++|+|++...
T Consensus 161 f~~~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~----------~~p~wSpDG~~la~~s~~~---------- 220 (430)
T PRK00178 161 FSTRILYVTAERFSVNTRYTLQRSDYDGARAVTLLQSREPI----------LSPRWSPDGKRIAYVSFEQ---------- 220 (430)
T ss_pred ceeeEEEEEeeCCCCCcceEEEEECCCCCCceEEecCCCce----------eeeeECCCCCEEEEEEcCC----------
Confidence 45679998754322 23455555 344455555433222 6899999999999986542
Q ss_pred CCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeec
Q 003886 240 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 319 (789)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~ 319 (789)
+.++||++|+++|+.+.+. ........+.|||||+. |+|+...
T Consensus 221 -------------------------------~~~~l~~~~l~~g~~~~l~--~~~g~~~~~~~SpDG~~----la~~~~~ 263 (430)
T PRK00178 221 -------------------------------KRPRIFVQNLDTGRREQIT--NFEGLNGAPAWSPDGSK----LAFVLSK 263 (430)
T ss_pred -------------------------------CCCEEEEEECCCCCEEEcc--CCCCCcCCeEECCCCCE----EEEEEcc
Confidence 3478999999999988883 33334557999999999 9998743
Q ss_pred CCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCC
Q 003886 320 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 399 (789)
Q Consensus 320 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~ 399 (789)
.+ ..+||++|+ ++++.++|+........|.|||||++|+|.+.+.
T Consensus 264 ~g------------~~~Iy~~d~-----------------~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~------ 308 (430)
T PRK00178 264 DG------------NPEIYVMDL-----------------ASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRG------ 308 (430)
T ss_pred CC------------CceEEEEEC-----------------CCCCeEEcccCCCCcCCeEECCCCCEEEEEECCC------
Confidence 22 247999998 7788889998777788899999999999998764
Q ss_pred ccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCc
Q 003886 400 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 479 (789)
Q Consensus 400 ~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~ 479 (789)
+..+||++|+.+++.+.++... . ....+.|+|||+.|+|.....+...|+.+|+.+|+
T Consensus 309 --g~~~iy~~d~~~g~~~~lt~~~-------------~-------~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~ 366 (430)
T PRK00178 309 --GKPQIYKVNVNGGRAERVTFVG-------------N-------YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS 366 (430)
T ss_pred --CCceEEEEECCCCCEEEeecCC-------------C-------CccceEECCCCCEEEEEEccCCceEEEEEECCCCC
Confidence 3458999999876654332110 0 11246799999999998876677789999999999
Q ss_pred EEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003886 480 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (789)
Q Consensus 480 ~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~ 522 (789)
.+.++....+ ....|++||+.++++...... ..|++.+..+
T Consensus 367 ~~~lt~~~~~-~~p~~spdg~~i~~~~~~~g~-~~l~~~~~~g 407 (430)
T PRK00178 367 VRILTDTSLD-ESPSVAPNGTMLIYATRQQGR-GVLMLVSING 407 (430)
T ss_pred EEEccCCCCC-CCceECCCCCEEEEEEecCCc-eEEEEEECCC
Confidence 9999875433 246899999999988765433 4577777643
No 28
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.84 E-value=2.2e-19 Score=194.29 Aligned_cols=238 Identities=18% Similarity=0.198 Sum_probs=179.8
Q ss_pred cccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCc
Q 003886 122 ANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTV 200 (789)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~ 200 (789)
.+.....+|..+- ++...+.++... .....|.|||||++++|+.-..++.+.++.+. ..++..++.......
T Consensus 168 ~~~~~~~l~~~D~--dg~~~~~l~~~~-----~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~ 240 (425)
T COG0823 168 GGPLPYELALGDY--DGYNQQKLTDSG-----SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN 240 (425)
T ss_pred cCCCCceEEEEcc--CCcceeEecccC-----cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc
Confidence 3446667888764 344555665554 34778999999999999987664547788888 677777777754444
Q ss_pred cccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEc
Q 003886 201 HGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVINI 280 (789)
Q Consensus 201 ~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~ 280 (789)
..++|||||++|+|..... +..+||++|+
T Consensus 241 ----------~~P~fspDG~~l~f~~~rd-----------------------------------------g~~~iy~~dl 269 (425)
T COG0823 241 ----------GAPAFSPDGSKLAFSSSRD-----------------------------------------GSPDIYLMDL 269 (425)
T ss_pred ----------CCccCCCCCCEEEEEECCC-----------------------------------------CCccEEEEcC
Confidence 6899999999999987754 4589999999
Q ss_pred cCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCC
Q 003886 281 NSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSE 360 (789)
Q Consensus 281 ~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 360 (789)
.++..++| +........+.|||||++ |||++++.+ ...||++++ +
T Consensus 270 ~~~~~~~L--t~~~gi~~~Ps~spdG~~----ivf~Sdr~G------------~p~I~~~~~-----------------~ 314 (425)
T COG0823 270 DGKNLPRL--TNGFGINTSPSWSPDGSK----IVFTSDRGG------------RPQIYLYDL-----------------E 314 (425)
T ss_pred CCCcceec--ccCCccccCccCCCCCCE----EEEEeCCCC------------CcceEEECC-----------------C
Confidence 99998888 455555559999999999 999986543 237999998 7
Q ss_pred CCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCC-CCCcccceeeEEeeeeccCCCCCc
Q 003886 361 DLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG-NFSSLEKIVDVIPVVQCAEGDCFP 439 (789)
Q Consensus 361 ~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~-~~~~t~~~~~v~~~~~~~~~~~f~ 439 (789)
++..+++|...+....|.|||||++|+|.+... +..++...|+.++. .+.++...
T Consensus 315 g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~--------g~~~i~~~~~~~~~~~~~lt~~~---------------- 370 (425)
T COG0823 315 GSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSG--------GQWDIDKNDLASGGKIRILTSTY---------------- 370 (425)
T ss_pred CCceeEeeccCCCCcCccCCCCCCEEEEEeccC--------CceeeEEeccCCCCcEEEccccc----------------
Confidence 888899998887777999999999999999442 22568888887766 33333221
Q ss_pred cccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEE
Q 003886 440 GLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 482 (789)
Q Consensus 440 g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~ 482 (789)
....+.|++||+.++|.+...+...|+.+.. +|+..+
T Consensus 371 -----~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~-~g~~~~ 407 (425)
T COG0823 371 -----LNESPSWAPNGRMIMFSSGQGGGSVLSLVSL-DGRVSR 407 (425)
T ss_pred -----cCCCCCcCCCCceEEEeccCCCCceEEEeec-cceeEE
Confidence 1246789999999999988887888888887 444443
No 29
>PRK13604 luxD acyl transferase; Provisional
Probab=99.83 E-value=2.6e-19 Score=182.28 Aligned_cols=207 Identities=13% Similarity=0.091 Sum_probs=138.2
Q ss_pred eecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCC-CCchhhccCCCC
Q 003886 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLG-FGEEALQSLPGK 646 (789)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G-~G~~~~~~~~~~ 646 (789)
....+|..|.||+..|++. ..++.++||+.||.... ...|...+.+|+++||.|+.+|+||+.| .+.++...
T Consensus 14 ~~~~dG~~L~Gwl~~P~~~-~~~~~~~vIi~HGf~~~--~~~~~~~A~~La~~G~~vLrfD~rg~~GeS~G~~~~~---- 86 (307)
T PRK13604 14 ICLENGQSIRVWETLPKEN-SPKKNNTILIASGFARR--MDHFAGLAEYLSSNGFHVIRYDSLHHVGLSSGTIDEF---- 86 (307)
T ss_pred EEcCCCCEEEEEEEcCccc-CCCCCCEEEEeCCCCCC--hHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCccccC----
Confidence 4556899999999999642 35678999999996654 2347778889999999999999987523 22222111
Q ss_pred CCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhc
Q 003886 647 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 726 (789)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~ 726 (789)
.......|+.++++|+.++ +.++|+|+|||+||.++..+|.. + .++++|+.+|+.++.......-...+......
T Consensus 87 t~s~g~~Dl~aaid~lk~~---~~~~I~LiG~SmGgava~~~A~~-~-~v~~lI~~sp~~~l~d~l~~~~~~~~~~~p~~ 161 (307)
T PRK13604 87 TMSIGKNSLLTVVDWLNTR---GINNLGLIAASLSARIAYEVINE-I-DLSFLITAVGVVNLRDTLERALGYDYLSLPID 161 (307)
T ss_pred cccccHHHHHHHHHHHHhc---CCCceEEEEECHHHHHHHHHhcC-C-CCCEEEEcCCcccHHHHHHHhhhcccccCccc
Confidence 1122378999999999886 35689999999999998766663 2 49999999999997644332100000000000
Q ss_pred cCccccccCCCCCh--hhHHHHH------hcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 727 GSKGKDSFTESPSV--EDLTRFH------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 727 ~~~~~~~~~~~~~~--~~~~~~~------~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
.....-.+.+.... ....... ..+|+..+++++.|+|+|||++|..||++++.+++++++
T Consensus 162 ~lp~~~d~~g~~l~~~~f~~~~~~~~~~~~~s~i~~~~~l~~PvLiIHG~~D~lVp~~~s~~l~e~~~ 229 (307)
T PRK13604 162 ELPEDLDFEGHNLGSEVFVTDCFKHGWDTLDSTINKMKGLDIPFIAFTANNDSWVKQSEVIDLLDSIR 229 (307)
T ss_pred ccccccccccccccHHHHHHHHHhcCccccccHHHHHhhcCCCEEEEEcCCCCccCHHHHHHHHHHhc
Confidence 00000001111110 1111111 234556788899999999999999999999999999886
No 30
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.82 E-value=2.5e-18 Score=190.57 Aligned_cols=232 Identities=17% Similarity=0.164 Sum_probs=161.2
Q ss_pred CCeEEEEecCCCC--CCeEEEEecCC-ceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCC
Q 003886 165 GSKLLVVRNPENE--SPIQFELWSQS-QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGST 241 (789)
Q Consensus 165 G~~la~~~~~~~~--~~~~~~i~~~~-~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~ 241 (789)
+++|||++...++ ...++..+.+| ..+.++.....+ ..+.|||||++|||++.+.
T Consensus 168 ~~ria~v~~~~~~~~~~~i~i~d~dg~~~~~lt~~~~~v----------~~p~wSPDG~~la~~s~~~------------ 225 (429)
T PRK01742 168 RTRIAYVVQKNGGSQPYEVRVADYDGFNQFIVNRSSQPL----------MSPAWSPDGSKLAYVSFEN------------ 225 (429)
T ss_pred CCEEEEEEEEcCCCceEEEEEECCCCCCceEeccCCCcc----------ccceEcCCCCEEEEEEecC------------
Confidence 6899999865432 23455545344 433333322223 6899999999999987542
Q ss_pred CCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCC
Q 003886 242 KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSE 321 (789)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~ 321 (789)
.+++|+++|+.+|+.+.+. ........++|||||+. |+|+....+
T Consensus 226 -----------------------------~~~~i~i~dl~tg~~~~l~--~~~g~~~~~~wSPDG~~----La~~~~~~g 270 (429)
T PRK01742 226 -----------------------------KKSQLVVHDLRSGARKVVA--SFRGHNGAPAFSPDGSR----LAFASSKDG 270 (429)
T ss_pred -----------------------------CCcEEEEEeCCCCceEEEe--cCCCccCceeECCCCCE----EEEEEecCC
Confidence 3478999999999877773 22233457999999999 999874221
Q ss_pred ceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCcc
Q 003886 322 TRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 401 (789)
Q Consensus 322 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~ 401 (789)
...||.+|+ +++..++|+.+......|.|||||++|+|.+.+.
T Consensus 271 ------------~~~Iy~~d~-----------------~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~-------- 313 (429)
T PRK01742 271 ------------VLNIYVMGA-----------------NGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRS-------- 313 (429)
T ss_pred ------------cEEEEEEEC-----------------CCCCeEeeccCCCCcCCEEECCCCCEEEEEECCC--------
Confidence 236999998 7788889998877788999999999999998764
Q ss_pred ccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEE
Q 003886 402 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 481 (789)
Q Consensus 402 ~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~ 481 (789)
+..+||.++..++..+.++. . . ..+.|+|||+.|++.+. ..++.+|+.+|+.+
T Consensus 314 g~~~I~~~~~~~~~~~~l~~-----------------~-----~-~~~~~SpDG~~ia~~~~----~~i~~~Dl~~g~~~ 366 (429)
T PRK01742 314 GSPQVYRMSASGGGASLVGG-----------------R-----G-YSAQISADGKTLVMING----DNVVKQDLTSGSTE 366 (429)
T ss_pred CCceEEEEECCCCCeEEecC-----------------C-----C-CCccCCCCCCEEEEEcC----CCEEEEECCCCCeE
Confidence 34579988876543321100 0 1 23579999999988754 35788999999988
Q ss_pred EecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEe
Q 003886 482 RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 519 (789)
Q Consensus 482 ~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~ 519 (789)
.++.... .....|+|||+.|++.... .....+++.+
T Consensus 367 ~lt~~~~-~~~~~~sPdG~~i~~~s~~-g~~~~l~~~~ 402 (429)
T PRK01742 367 VLSSTFL-DESPSISPNGIMIIYSSTQ-GLGKVLQLVS 402 (429)
T ss_pred EecCCCC-CCCceECCCCCEEEEEEcC-CCceEEEEEE
Confidence 8875432 2346799999998888753 3333344444
No 31
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.81 E-value=1.1e-17 Score=186.34 Aligned_cols=244 Identities=15% Similarity=0.145 Sum_probs=176.0
Q ss_pred CCCCCeEEEEecCC-CCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCC
Q 003886 162 SPSGSKLLVVRNPE-NESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 239 (789)
Q Consensus 162 SPdG~~la~~~~~~-~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 239 (789)
.+.|.+++|++... ++...++.++ +++..++++...... ..+.|||||++|||+....
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~----------~~p~~Spdg~~la~~~~~~---------- 211 (417)
T TIGR02800 152 GAFSTRIAYVSKSGKSRRYELQVADYDGANPQTITRSREPI----------LSPAWSPDGQKLAYVSFES---------- 211 (417)
T ss_pred CCcCCEEEEEEEeCCCCcceEEEEcCCCCCCEEeecCCCce----------ecccCCCCCCEEEEEEcCC----------
Confidence 45678899998654 3455677666 445566666543223 6789999999999986432
Q ss_pred CCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeec
Q 003886 240 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 319 (789)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~ 319 (789)
+...|+++|+.+|+.+.+. ........+.|+|||+. |+|....
T Consensus 212 -------------------------------~~~~i~v~d~~~g~~~~~~--~~~~~~~~~~~spDg~~----l~~~~~~ 254 (417)
T TIGR02800 212 -------------------------------GKPEIYVQDLATGQREKVA--SFPGMNGAPAFSPDGSK----LAVSLSK 254 (417)
T ss_pred -------------------------------CCcEEEEEECCCCCEEEee--cCCCCccceEECCCCCE----EEEEECC
Confidence 2368999999999877773 33334456899999999 9987632
Q ss_pred CCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCC
Q 003886 320 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 399 (789)
Q Consensus 320 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~ 399 (789)
. ....||.+++ .++..++|+........|.|||||++|+|.+.+.
T Consensus 255 ~------------~~~~i~~~d~-----------------~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~------ 299 (417)
T TIGR02800 255 D------------GNPDIYVMDL-----------------DGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRG------ 299 (417)
T ss_pred C------------CCccEEEEEC-----------------CCCCEEECCCCCCCCCCEEECCCCCEEEEEECCC------
Confidence 2 2347999998 6777888887766667899999999999998764
Q ss_pred ccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCc
Q 003886 400 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 479 (789)
Q Consensus 400 ~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~ 479 (789)
+..+||++|+.+++.+.++... .....+.|+|||+.|+++....+...|+.+|+.++.
T Consensus 300 --g~~~iy~~d~~~~~~~~l~~~~--------------------~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 300 --GSPQIYMMDADGGEVRRLTFRG--------------------GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred --CCceEEEEECCCCCEEEeecCC--------------------CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence 2357999998775543322111 012456899999999998877777899999999988
Q ss_pred EEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeec
Q 003886 480 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521 (789)
Q Consensus 480 ~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~ 521 (789)
.+.++.... .....|++||+.|++.+..... ..+++.+..
T Consensus 358 ~~~l~~~~~-~~~p~~spdg~~l~~~~~~~~~-~~l~~~~~~ 397 (417)
T TIGR02800 358 ERVLTDTGL-DESPSFAPNGRMILYATTRGGR-GVLGLVSTD 397 (417)
T ss_pred eEEccCCCC-CCCceECCCCCEEEEEEeCCCc-EEEEEEECC
Confidence 888775433 2345899999999998876554 456666543
No 32
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=99.78 E-value=7.9e-18 Score=184.05 Aligned_cols=201 Identities=15% Similarity=0.145 Sum_probs=130.7
Q ss_pred ecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCC
Q 003886 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (789)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~ 648 (789)
...+|..+.|+++.|+ ..++.|+||+.|| ..+.....|......|+++||+|+++|+|| +|.+.....
T Consensus 174 ~~~~g~~l~g~l~~P~---~~~~~P~Vli~gG-~~~~~~~~~~~~~~~La~~Gy~vl~~D~pG---~G~s~~~~~----- 241 (414)
T PRK05077 174 PIPGGGPITGFLHLPK---GDGPFPTVLVCGG-LDSLQTDYYRLFRDYLAPRGIAMLTIDMPS---VGFSSKWKL----- 241 (414)
T ss_pred EcCCCcEEEEEEEECC---CCCCccEEEEeCC-cccchhhhHHHHHHHHHhCCCEEEEECCCC---CCCCCCCCc-----
Confidence 3456778999999997 3467888876555 443223456666788999999999999998 343321111
Q ss_pred cccH-HHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccch-hhhh-cCCCCCcchhhhh
Q 003886 649 SQDV-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL-ALMV-GTTDIPDWCYVES 725 (789)
Q Consensus 649 ~~~~-~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~-~~~~-~~~~~~~~~~~~~ 725 (789)
..+. ....++++++.+.+.+|.+||+++|||+||++++.++..+|++++++|+.+|+.+. .... .....+.. +...
T Consensus 242 ~~d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~~~~~~~~~~~~~p~~-~~~~ 320 (414)
T PRK05077 242 TQDSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVHTLLTDPKRQQQVPEM-YLDV 320 (414)
T ss_pred cccHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccchhhcchhhhhhchHH-HHHH
Confidence 1122 23357889999888899999999999999999999999889999999999988641 1100 00001110 1111
Q ss_pred ccCccccccCCCC--Chh-hHHHHHhcCcc--cc-CCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 726 YGSKGKDSFTESP--SVE-DLTRFHSKSPI--SH-ISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 726 ~~~~~~~~~~~~~--~~~-~~~~~~~~sp~--~~-~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
+.. . ++.+ ..+ ....+..++.. .. ..++++|+|++||++|.+||++++..+.+..++
T Consensus 321 la~----~-lg~~~~~~~~l~~~l~~~sl~~~~~l~~~i~~PvLiI~G~~D~ivP~~~a~~l~~~~~~ 383 (414)
T PRK05077 321 LAS----R-LGMHDASDEALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLIASSSAD 383 (414)
T ss_pred HHH----H-hCCCCCChHHHHHHhhhccchhhhhhccCCCCcEEEEecCCCCCCCHHHHHHHHHhCCC
Confidence 100 0 1110 111 11122222211 11 257899999999999999999999988887764
No 33
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.77 E-value=3.1e-17 Score=177.57 Aligned_cols=205 Identities=18% Similarity=0.223 Sum_probs=158.3
Q ss_pred cceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccC
Q 003886 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (789)
Q Consensus 211 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (789)
..+.|||||++|+|...... +.+++|++|+++|+..++
T Consensus 196 ~~p~ws~~~~~~~y~~f~~~----------------------------------------~~~~i~~~~l~~g~~~~i-- 233 (425)
T COG0823 196 LTPAWSPDGKKLAYVSFELG----------------------------------------GCPRIYYLDLNTGKRPVI-- 233 (425)
T ss_pred eccccCcCCCceEEEEEecC----------------------------------------CCceEEEEeccCCcccee--
Confidence 57999999999999855431 227899999999988777
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCC
Q 003886 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 370 (789)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~ 370 (789)
.........+.|||||++ |+|+..+. ...+||.+|+ .++...+|+..
T Consensus 234 ~~~~g~~~~P~fspDG~~----l~f~~~rd------------g~~~iy~~dl-----------------~~~~~~~Lt~~ 280 (425)
T COG0823 234 LNFNGNNGAPAFSPDGSK----LAFSSSRD------------GSPDIYLMDL-----------------DGKNLPRLTNG 280 (425)
T ss_pred eccCCccCCccCCCCCCE----EEEEECCC------------CCccEEEEcC-----------------CCCcceecccC
Confidence 455556778999999999 99998544 3458999999 67778889999
Q ss_pred CCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCc
Q 003886 371 ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP 450 (789)
Q Consensus 371 ~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ 450 (789)
.+....|.|||||++|+|.+.+. +..+||++|++++..+.+|.... +-..+.
T Consensus 281 ~gi~~~Ps~spdG~~ivf~Sdr~--------G~p~I~~~~~~g~~~~riT~~~~--------------------~~~~p~ 332 (425)
T COG0823 281 FGINTSPSWSPDGSKIVFTSDRG--------GRPQIYLYDLEGSQVTRLTFSGG--------------------GNSNPV 332 (425)
T ss_pred CccccCccCCCCCCEEEEEeCCC--------CCcceEEECCCCCceeEeeccCC--------------------CCcCcc
Confidence 88888999999999999999886 45689999999977765554321 112568
Q ss_pred cccCCCEEEEEEEeCCeEEEEEEECCCCc-EEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEee
Q 003886 451 WLSDGCTMLLSSIWGSSQVIISVNVSSGE-LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 520 (789)
Q Consensus 451 ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~-~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~ 520 (789)
|||||++|+|....++...+...++.++. .+.++.... .....++++|..+.+..... .-+.++...+
T Consensus 333 ~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~-~e~ps~~~ng~~i~~~s~~~-~~~~l~~~s~ 401 (425)
T COG0823 333 WSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYL-NESPSWAPNGRMIMFSSGQG-GGSVLSLVSL 401 (425)
T ss_pred CCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcccccc-CCCCCcCCCCceEEEeccCC-CCceEEEeec
Confidence 99999999999866666778888887776 555555443 23467889999999988877 3344555443
No 34
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.75 E-value=4e-17 Score=175.42 Aligned_cols=213 Identities=15% Similarity=0.176 Sum_probs=133.2
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~ 646 (789)
.++..||..+++..+.|.+ .....++||++||.+... ...|......|+++||.|+++|+|| +|.+........
T Consensus 36 ~~~~~dg~~l~~~~~~~~~--~~~~~~~VvllHG~~~~~-~~~~~~~~~~L~~~Gy~V~~~D~rG---hG~S~~~~~~~~ 109 (330)
T PLN02298 36 FFTSPRGLSLFTRSWLPSS--SSPPRALIFMVHGYGNDI-SWTFQSTAIFLAQMGFACFALDLEG---HGRSEGLRAYVP 109 (330)
T ss_pred eEEcCCCCEEEEEEEecCC--CCCCceEEEEEcCCCCCc-ceehhHHHHHHHhCCCEEEEecCCC---CCCCCCccccCC
Confidence 4556689999998887752 234678999999975432 2234455678899999999999998 555431110001
Q ss_pred CCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcch---hh
Q 003886 647 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWC---YV 723 (789)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~---~~ 723 (789)
......+|+.++++++......+..+++|+|||+||.+++.++.++|++++++|+.+|........... ..... +.
T Consensus 110 ~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~-~~~~~~~~~~ 188 (330)
T PLN02298 110 NVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLVAPMCKISDKIRPP-WPIPQILTFV 188 (330)
T ss_pred CHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEecccccCCcccCCc-hHHHHHHHHH
Confidence 111236788899999877543455689999999999999999999999999999999875432110000 00000 00
Q ss_pred hhccC--------cccc-----------------ccCCCCChhhHHHHHh-c-CccccCCCCCCCEEEEEeCCCCCCChH
Q 003886 724 ESYGS--------KGKD-----------------SFTESPSVEDLTRFHS-K-SPISHISKVKTPTIFLLGAQDLRVPVS 776 (789)
Q Consensus 724 ~~~~~--------~~~~-----------------~~~~~~~~~~~~~~~~-~-sp~~~~~~i~~P~Lii~G~~D~~vp~~ 776 (789)
..+.. .... .+...+.......... . .....+.++++|+||+||++|.+||++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~ivp~~ 268 (330)
T PLN02298 189 ARFLPTLAIVPTADLLEKSVKVPAKKIIAKRNPMRYNGKPRLGTVVELLRVTDYLGKKLKDVSIPFIVLHGSADVVTDPD 268 (330)
T ss_pred HHHCCCCccccCCCcccccccCHHHHHHHHhCccccCCCccHHHHHHHHHHHHHHHHhhhhcCCCEEEEecCCCCCCCHH
Confidence 00000 0000 0000000000000000 0 012346788999999999999999999
Q ss_pred HHHHHHHHCC
Q 003886 777 NGLQVIYHIP 786 (789)
Q Consensus 777 ~~~~l~~~l~ 786 (789)
.+.++++.++
T Consensus 269 ~~~~l~~~i~ 278 (330)
T PLN02298 269 VSRALYEEAK 278 (330)
T ss_pred HHHHHHHHhc
Confidence 9999998875
No 35
>PRK10566 esterase; Provisional
Probab=99.75 E-value=1.9e-17 Score=170.56 Aligned_cols=199 Identities=14% Similarity=0.114 Sum_probs=123.3
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCC-CchhhccCCCCCC--cccH
Q 003886 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGF-GEEALQSLPGKVG--SQDV 652 (789)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~-G~~~~~~~~~~~~--~~~~ 652 (789)
+..+.+.|.+ ..+++.|+||++||.+.+ ...|....+.|+++||.|+++|+||.+.. +..........|. ....
T Consensus 12 ~~~~~~~p~~-~~~~~~p~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~G~~~~~~~~~~~~~~~~~~~~~~ 88 (249)
T PRK10566 12 IEVLHAFPAG-QRDTPLPTVFFYHGFTSS--KLVYSYFAVALAQAGFRVIMPDAPMHGARFSGDEARRLNHFWQILLQNM 88 (249)
T ss_pred cceEEEcCCC-CCCCCCCEEEEeCCCCcc--cchHHHHHHHHHhCCCEEEEecCCcccccCCCccccchhhHHHHHHHHH
Confidence 4455667753 124568999999997664 34566778899999999999999984321 1000000000010 1236
Q ss_pred HHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCcccc
Q 003886 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKD 732 (789)
Q Consensus 653 ~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (789)
+|+.++++++.+++.+|.+||+++|||+||++++.++.++|+. ++++...+.............+... .. ..
T Consensus 89 ~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~ 160 (249)
T PRK10566 89 QEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPWV-KCVASLMGSGYFTSLARTLFPPLIP-----ET--AA 160 (249)
T ss_pred HHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCCe-eEEEEeeCcHHHHHHHHHhcccccc-----cc--cc
Confidence 7888889999888888999999999999999999999988764 4443332211111110000000000 00 00
Q ss_pred ccCCCCChhhHHHHHhcCccccCCCC-CCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 733 SFTESPSVEDLTRFHSKSPISHISKV-KTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 733 ~~~~~~~~~~~~~~~~~sp~~~~~~i-~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.. ....+....+...++...+.++ ++|+|++||++|.+||++++.+++++++.
T Consensus 161 ~~--~~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~ 214 (249)
T PRK10566 161 QQ--AEFNNIVAPLAEWEVTHQLEQLADRPLLLWHGLADDVVPAAESLRLQQALRE 214 (249)
T ss_pred cH--HHHHHHHHHHhhcChhhhhhhcCCCCEEEEEcCCCCcCCHHHHHHHHHHHHh
Confidence 00 0000111223344555566776 79999999999999999999999998864
No 36
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=99.73 E-value=6.4e-17 Score=161.67 Aligned_cols=191 Identities=18% Similarity=0.131 Sum_probs=123.4
Q ss_pred EEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhH---HHHHHHHHCCcEEEEEcCCCCCCCCchh--hccCCCCCCcccH
Q 003886 578 AIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS---KSLAFLSSVGYSLLIVNYRGSLGFGEEA--LQSLPGKVGSQDV 652 (789)
Q Consensus 578 ~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~---~~~~~la~~Gy~V~~~d~rGs~G~G~~~--~~~~~~~~~~~~~ 652 (789)
+++|.|++. .+++|+||++||+++.. ..+. .....+.+.||.|++||++|+.+.+..+ ........+..+.
T Consensus 1 ~~ly~P~~~--~~~~P~vv~lHG~~~~~--~~~~~~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~~~ 76 (212)
T TIGR01840 1 MYVYVPAGL--TGPRALVLALHGCGQTA--SAYVIDWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTGEV 76 (212)
T ss_pred CEEEcCCCC--CCCCCEEEEeCCCCCCH--HHHhhhcChHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCCccH
Confidence 367888763 46799999999987652 2232 1334455689999999999865433221 1111112234567
Q ss_pred HHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCcccc
Q 003886 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKD 732 (789)
Q Consensus 653 ~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (789)
.|+...++++.++..+|++||+|+|+|+||++++.++.++|++|+++++.++....... .. ...+.
T Consensus 77 ~~~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~~~~~-------~~--~~~~~----- 142 (212)
T TIGR01840 77 ESLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPYGEAS-------SS--ISATP----- 142 (212)
T ss_pred HHHHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCcccccc-------cc--hhhHh-----
Confidence 88999999999887799999999999999999999999999999999888875321000 00 00000
Q ss_pred ccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 733 SFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 733 ~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.+...........+.... .........|++|+||++|.+||++.+.++++.|+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~i~hG~~D~vVp~~~~~~~~~~l~~ 196 (212)
T TIGR01840 143 QMCTAATAASVCRLVRGM-QSEYNGPTPIMSVVHGDADYTVLPGNADEIRDAMLK 196 (212)
T ss_pred hcCCCCCHHHHHHHHhcc-CCcccCCCCeEEEEEcCCCceeCcchHHHHHHHHHH
Confidence 000001111111111110 111223345578999999999999999999998763
No 37
>PHA02857 monoglyceride lipase; Provisional
Probab=99.72 E-value=2.6e-16 Score=164.68 Aligned_cols=208 Identities=17% Similarity=0.170 Sum_probs=132.0
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~ 646 (789)
++.+.||..|.+.++.|. ..+.|+|+++||.+. ....|......|+++||.|+++|+|| +|.+........
T Consensus 4 ~~~~~~g~~l~~~~~~~~----~~~~~~v~llHG~~~--~~~~~~~~~~~l~~~g~~via~D~~G---~G~S~~~~~~~~ 74 (276)
T PHA02857 4 CMFNLDNDYIYCKYWKPI----TYPKALVFISHGAGE--HSGRYEELAENISSLGILVFSHDHIG---HGRSNGEKMMID 74 (276)
T ss_pred eeecCCCCEEEEEeccCC----CCCCEEEEEeCCCcc--ccchHHHHHHHHHhCCCEEEEccCCC---CCCCCCccCCcC
Confidence 456679999999999884 345689999999655 35677788889999999999999998 555432111000
Q ss_pred CCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhh-------------hc
Q 003886 647 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM-------------VG 713 (789)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~-------------~~ 713 (789)
.....++|+.+.++++.+. ....+++|+|||+||.+++.++.++|++++++|+.+|..+.... ..
T Consensus 75 ~~~~~~~d~~~~l~~~~~~--~~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~~~~~~~~~~~~~~~ 152 (276)
T PHA02857 75 DFGVYVRDVVQHVVTIKST--YPGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVNAEAVPRLNLLAAKLMGIFY 152 (276)
T ss_pred CHHHHHHHHHHHHHHHHhh--CCCCCEEEEEcCchHHHHHHHHHhCccccceEEEeccccccccccHHHHHHHHHHHHhC
Confidence 1112257777777776654 33468999999999999999999999999999999997542110 00
Q ss_pred CCC-CCcchhhhhccCc--ccccc-------CCCCChhhHHHHHhc--CccccCCCCCCCEEEEEeCCCCCCChHHHHHH
Q 003886 714 TTD-IPDWCYVESYGSK--GKDSF-------TESPSVEDLTRFHSK--SPISHISKVKTPTIFLLGAQDLRVPVSNGLQV 781 (789)
Q Consensus 714 ~~~-~~~~~~~~~~~~~--~~~~~-------~~~~~~~~~~~~~~~--sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l 781 (789)
... ...+.. ..+... ....+ ............... .....+.++++|+|++||++|.++|++.+.++
T Consensus 153 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvliv~G~~D~i~~~~~~~~l 231 (276)
T PHA02857 153 PNKIVGKLCP-ESVSRDMDEVYKYQYDPLVNHEKIKAGFASQVLKATNKVRKIIPKIKTPILILQGTNNEISDVSGAYYF 231 (276)
T ss_pred CCCccCCCCH-hhccCCHHHHHHHhcCCCccCCCccHHHHHHHHHHHHHHHHhcccCCCCEEEEecCCCCcCChHHHHHH
Confidence 000 000000 000000 00000 000000000000000 11234778999999999999999999999999
Q ss_pred HHHCC
Q 003886 782 IYHIP 786 (789)
Q Consensus 782 ~~~l~ 786 (789)
++.+.
T Consensus 232 ~~~~~ 236 (276)
T PHA02857 232 MQHAN 236 (276)
T ss_pred HHHcc
Confidence 98874
No 38
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.72 E-value=2.7e-16 Score=170.10 Aligned_cols=210 Identities=15% Similarity=0.184 Sum_probs=130.8
Q ss_pred eecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCC
Q 003886 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (789)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~ 647 (789)
+.+.+|.++.+..+.|. ..+..|+||++||.+... ...|......|+++||.|+++|+|| +|.+... .+..
T Consensus 66 ~~~~~g~~l~~~~~~p~---~~~~~~~iv~lHG~~~~~-~~~~~~~~~~l~~~g~~v~~~D~~G---~G~S~~~--~~~~ 136 (349)
T PLN02385 66 EVNSRGVEIFSKSWLPE---NSRPKAAVCFCHGYGDTC-TFFFEGIARKIASSGYGVFAMDYPG---FGLSEGL--HGYI 136 (349)
T ss_pred EEcCCCCEEEEEEEecC---CCCCCeEEEEECCCCCcc-chHHHHHHHHHHhCCCEEEEecCCC---CCCCCCC--CCCc
Confidence 44568999999888886 335679999999965531 2234556778999999999999998 5544321 1111
Q ss_pred -C-cccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcC-----------
Q 003886 648 -G-SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT----------- 714 (789)
Q Consensus 648 -~-~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~----------- 714 (789)
. ...++|+.+.++.+..+...+..++.|+|||+||++++.++.++|++++++|+.+|..........
T Consensus 137 ~~~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~~~~~~~~~~~~~~~~~~~ 216 (349)
T PLN02385 137 PSFDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMCKIADDVVPPPLVLQILILL 216 (349)
T ss_pred CCHHHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEecccccccccccCchHHHHHHHHH
Confidence 1 112566677777665543345668999999999999999999999999999999986542110000
Q ss_pred -CCCCcchh------hhh-ccCc--------cccccCCCCCh-hhHHHHHhc-CccccCCCCCCCEEEEEeCCCCCCChH
Q 003886 715 -TDIPDWCY------VES-YGSK--------GKDSFTESPSV-EDLTRFHSK-SPISHISKVKTPTIFLLGAQDLRVPVS 776 (789)
Q Consensus 715 -~~~~~~~~------~~~-~~~~--------~~~~~~~~~~~-~~~~~~~~~-sp~~~~~~i~~P~Lii~G~~D~~vp~~ 776 (789)
...+.+.. ... +... ....+...+.. ...+.+... .....+.++++|+|++||++|.+||++
T Consensus 217 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~i~~P~Lii~G~~D~vv~~~ 296 (349)
T PLN02385 217 ANLLPKAKLVPQKDLAELAFRDLKKRKMAEYNVIAYKDKPRLRTAVELLRTTQEIEMQLEEVSLPLLILHGEADKVTDPS 296 (349)
T ss_pred HHHCCCceecCCCccccccccCHHHHHHhhcCcceeCCCcchHHHHHHHHHHHHHHHhcccCCCCEEEEEeCCCCccChH
Confidence 00000000 000 0000 00000000000 011111111 112347789999999999999999999
Q ss_pred HHHHHHHHCC
Q 003886 777 NGLQVIYHIP 786 (789)
Q Consensus 777 ~~~~l~~~l~ 786 (789)
.+.++++.+.
T Consensus 297 ~~~~l~~~~~ 306 (349)
T PLN02385 297 VSKFLYEKAS 306 (349)
T ss_pred HHHHHHHHcC
Confidence 9999999874
No 39
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=99.71 E-value=1e-16 Score=167.90 Aligned_cols=209 Identities=20% Similarity=0.252 Sum_probs=134.5
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccC---
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL--- 643 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~--- 643 (789)
.|.+.+|..+.|+++.|++ ..++.|+||.+||.+.. ...+. ....++.+||+|+.+|.||.+|...+.....
T Consensus 60 ~f~s~~g~~V~g~l~~P~~--~~~~~Pavv~~hGyg~~--~~~~~-~~~~~a~~G~~vl~~d~rGqg~~~~d~~~~~~~~ 134 (320)
T PF05448_consen 60 SFESFDGSRVYGWLYRPKN--AKGKLPAVVQFHGYGGR--SGDPF-DLLPWAAAGYAVLAMDVRGQGGRSPDYRGSSGGT 134 (320)
T ss_dssp EEEEGGGEEEEEEEEEES---SSSSEEEEEEE--TT----GGGHH-HHHHHHHTT-EEEEE--TTTSSSS-B-SSBSSS-
T ss_pred EEEccCCCEEEEEEEecCC--CCCCcCEEEEecCCCCC--CCCcc-cccccccCCeEEEEecCCCCCCCCCCccccCCCC
Confidence 6777889999999999984 45799999999996553 22222 2346889999999999999765443321110
Q ss_pred -CC--CCCc----------ccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc-cchh
Q 003886 644 -PG--KVGS----------QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL-CNLA 709 (789)
Q Consensus 644 -~~--~~~~----------~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv-~~~~ 709 (789)
.+ ..|. ..+.|+..++++|.+++.+|.+||+++|.|+||.+++.+++..+ +++++++..|. +|+.
T Consensus 135 ~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~-rv~~~~~~vP~l~d~~ 213 (320)
T PF05448_consen 135 LKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDP-RVKAAAADVPFLCDFR 213 (320)
T ss_dssp SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSS-T-SEEEEESESSSSHH
T ss_pred CccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCc-cccEEEecCCCccchh
Confidence 01 0111 12589999999999999999999999999999999999999864 79999999885 5555
Q ss_pred hhhcCCC-CCcch-hhhhccCccccccCCCC--ChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHC
Q 003886 710 LMVGTTD-IPDWC-YVESYGSKGKDSFTESP--SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHI 785 (789)
Q Consensus 710 ~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l 785 (789)
..+.... ...+. ....+. .....+ ..+..+.+...+....+..|++|+|+..|-.|..|||......|++|
T Consensus 214 ~~~~~~~~~~~y~~~~~~~~-----~~d~~~~~~~~v~~~L~Y~D~~nfA~ri~~pvl~~~gl~D~~cPP~t~fA~yN~i 288 (320)
T PF05448_consen 214 RALELRADEGPYPEIRRYFR-----WRDPHHEREPEVFETLSYFDAVNFARRIKCPVLFSVGLQDPVCPPSTQFAAYNAI 288 (320)
T ss_dssp HHHHHT--STTTHHHHHHHH-----HHSCTHCHHHHHHHHHHTT-HHHHGGG--SEEEEEEETT-SSS-HHHHHHHHCC-
T ss_pred hhhhcCCccccHHHHHHHHh-----ccCCCcccHHHHHHHHhhhhHHHHHHHcCCCEEEEEecCCCCCCchhHHHHHhcc
Confidence 4332211 11111 000000 000011 12334556677888889999999999999999999999999999988
Q ss_pred C
Q 003886 786 P 786 (789)
Q Consensus 786 ~ 786 (789)
+
T Consensus 289 ~ 289 (320)
T PF05448_consen 289 P 289 (320)
T ss_dssp -
T ss_pred C
Confidence 6
No 40
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.71 E-value=7.8e-17 Score=154.78 Aligned_cols=210 Identities=17% Similarity=0.241 Sum_probs=145.9
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhcc----
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQS---- 642 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~---- 642 (789)
+|++-+|.+|.||+++|+. ..++.|+||..||..++.+ .| ...-.|+..||+|+.+|.||.++..++....
T Consensus 60 Tf~g~~g~rI~gwlvlP~~--~~~~~P~vV~fhGY~g~~g--~~-~~~l~wa~~Gyavf~MdvRGQg~~~~dt~~~p~~~ 134 (321)
T COG3458 60 TFTGYGGARIKGWLVLPRH--EKGKLPAVVQFHGYGGRGG--EW-HDMLHWAVAGYAVFVMDVRGQGSSSQDTADPPGGP 134 (321)
T ss_pred EEeccCCceEEEEEEeecc--cCCccceEEEEeeccCCCC--Cc-cccccccccceeEEEEecccCCCccccCCCCCCCC
Confidence 7888899999999999984 4489999999999655422 22 2344788999999999999976653311111
Q ss_pred -CCCC--CC----------cccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccc-h
Q 003886 643 -LPGK--VG----------SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN-L 708 (789)
Q Consensus 643 -~~~~--~~----------~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~-~ 708 (789)
.++. .| ..-+.|+..+++.+.+...+|.+||++.|.|.||.+++.+++.. .++|++++..|++. .
T Consensus 135 s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~-~rik~~~~~~Pfl~df 213 (321)
T COG3458 135 SDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALD-PRIKAVVADYPFLSDF 213 (321)
T ss_pred cCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhhhhhcC-hhhhcccccccccccc
Confidence 1111 01 11267899999999999999999999999999999999999865 48999999999753 2
Q ss_pred hhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 709 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.......... .|.+... +.++. .....+..+.+...+....+.+++.|+|+..|..|++|||......|+++..
T Consensus 214 ~r~i~~~~~~--~ydei~~--y~k~h-~~~e~~v~~TL~yfD~~n~A~RiK~pvL~svgL~D~vcpPstqFA~yN~l~~ 287 (321)
T COG3458 214 PRAIELATEG--PYDEIQT--YFKRH-DPKEAEVFETLSYFDIVNLAARIKVPVLMSVGLMDPVCPPSTQFAAYNALTT 287 (321)
T ss_pred hhheeecccC--cHHHHHH--HHHhc-CchHHHHHHHHhhhhhhhHHHhhccceEEeecccCCCCCChhhHHHhhcccC
Confidence 2221110000 0111000 00000 1111233445555566667889999999999999999999999999999853
No 41
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.70 E-value=3e-16 Score=151.92 Aligned_cols=179 Identities=17% Similarity=0.253 Sum_probs=131.0
Q ss_pred ecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHH-CCcEEEEEcCCCCCCCCchhhccCCCCC
Q 003886 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (789)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~-~Gy~V~~~d~rGs~G~G~~~~~~~~~~~ 647 (789)
+...|..+-+..+.|+ ....+++++.||... ...+....+..|.. .++.|+.+||+| +|.+......
T Consensus 41 ~t~rgn~~~~~y~~~~----~~~~~~lly~hGNa~--Dlgq~~~~~~~l~~~ln~nv~~~DYSG---yG~S~G~psE--- 108 (258)
T KOG1552|consen 41 KTSRGNEIVCMYVRPP----EAAHPTLLYSHGNAA--DLGQMVELFKELSIFLNCNVVSYDYSG---YGRSSGKPSE--- 108 (258)
T ss_pred ecCCCCEEEEEEEcCc----cccceEEEEcCCccc--chHHHHHHHHHHhhcccceEEEEeccc---ccccCCCccc---
Confidence 3445677888888885 235799999999522 22222233334443 689999999998 4444322211
Q ss_pred CcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcC-CCCCcchhhhhc
Q 003886 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-TDIPDWCYVESY 726 (789)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~-~~~~~~~~~~~~ 726 (789)
....+|+.++.++|.++.. ..++|+|+|+|+|...++.+|++.| .+|+|+.+|+.+....+.. .....|+
T Consensus 109 -~n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~~rv~~~~~~~~~~~----- 179 (258)
T KOG1552|consen 109 -RNLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTSGMRVAFPDTKTTYCF----- 179 (258)
T ss_pred -ccchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchhhhhhhccCcceEEee-----
Confidence 1357999999999999855 7899999999999999999999987 9999999999875444322 1111110
Q ss_pred cCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCCC
Q 003886 727 GSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPFS 788 (789)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~~ 788 (789)
..+..+..++.|+||+|++||++|++||+.++.+||++++++
T Consensus 180 --------------------d~f~~i~kI~~i~~PVLiiHgtdDevv~~sHg~~Lye~~k~~ 221 (258)
T KOG1552|consen 180 --------------------DAFPNIEKISKITCPVLIIHGTDDEVVDFSHGKALYERCKEK 221 (258)
T ss_pred --------------------ccccccCcceeccCCEEEEecccCceecccccHHHHHhcccc
Confidence 011125678889999999999999999999999999999875
No 42
>PLN02442 S-formylglutathione hydrolase
Probab=99.69 E-value=4.8e-16 Score=162.03 Aligned_cols=197 Identities=15% Similarity=0.155 Sum_probs=125.2
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHH---HHHHHHHCCcEEEEEcCCCCC------------CCC
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSL------------GFG 636 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~---~~~~la~~Gy~V~~~d~rGs~------------G~G 636 (789)
-|..+...+|.|+. .+.+++|+|+++||++++. ..|.. ..+.++..||+|++||..+.+ ++|
T Consensus 28 l~~~~~~~vy~P~~-~~~~~~Pvv~~lHG~~~~~--~~~~~~~~~~~~~~~~g~~Vv~pd~~~~g~~~~~~~~~~~~~~~ 104 (283)
T PLN02442 28 LGCSMTFSVYFPPA-SDSGKVPVLYWLSGLTCTD--ENFIQKSGAQRAAAARGIALVAPDTSPRGLNVEGEADSWDFGVG 104 (283)
T ss_pred cCCceEEEEEcCCc-ccCCCCCEEEEecCCCcCh--HHHHHhhhHHHHHhhcCeEEEecCCCCCCCCCCCCccccccCCC
Confidence 45678888999973 3467899999999977643 33322 234667789999999975321 111
Q ss_pred chhh-ccCCCCCC-----cccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhh
Q 003886 637 EEAL-QSLPGKVG-----SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 710 (789)
Q Consensus 637 ~~~~-~~~~~~~~-----~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~ 710 (789)
.++. +.....++ ....+++...++.... .+|.++++|+|+|+||++++.++.++|++|+++++.+|++++..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~--~~~~~~~~i~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~~~~~ 182 (283)
T PLN02442 105 AGFYLNATQEKWKNWRMYDYVVKELPKLLSDNFD--QLDTSRASIFGHSMGGHGALTIYLKNPDKYKSVSAFAPIANPIN 182 (283)
T ss_pred cceeeccccCCCcccchhhhHHHHHHHHHHHHHH--hcCCCceEEEEEChhHHHHHHHHHhCchhEEEEEEECCccCccc
Confidence 1110 11111111 1112334334433332 26889999999999999999999999999999999999987432
Q ss_pred hhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChH-HHHHHHHHCCC
Q 003886 711 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVS-NGLQVIYHIPF 787 (789)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~-~~~~l~~~l~~ 787 (789)
.. +.. .. ...+++.+ .+..+.+...+++..+.+.++|+|++||++|..|+.. ++..+++++++
T Consensus 183 ~~-------~~~-~~-----~~~~~g~~-~~~~~~~d~~~~~~~~~~~~~pvli~~G~~D~~v~~~~~s~~~~~~l~~ 246 (283)
T PLN02442 183 CP-------WGQ-KA-----FTNYLGSD-KADWEEYDATELVSKFNDVSATILIDQGEADKFLKEQLLPENFEEACKE 246 (283)
T ss_pred Cc-------hhh-HH-----HHHHcCCC-hhhHHHcChhhhhhhccccCCCEEEEECCCCccccccccHHHHHHHHHH
Confidence 10 110 00 11122222 1333444445555666677899999999999999974 57788877753
No 43
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=99.69 E-value=1.3e-15 Score=150.37 Aligned_cols=213 Identities=17% Similarity=0.213 Sum_probs=143.9
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~ 646 (789)
.+++.+|..+....+.|.. ..++.-+|+++||.+.. ....|...+..|+..||.|+++|++| +|.+.. +...
T Consensus 31 ~~~n~rG~~lft~~W~p~~--~~~pr~lv~~~HG~g~~-~s~~~~~~a~~l~~~g~~v~a~D~~G---hG~SdG--l~~y 102 (313)
T KOG1455|consen 31 FFTNPRGAKLFTQSWLPLS--GTEPRGLVFLCHGYGEH-SSWRYQSTAKRLAKSGFAVYAIDYEG---HGRSDG--LHAY 102 (313)
T ss_pred eEEcCCCCEeEEEecccCC--CCCCceEEEEEcCCccc-chhhHHHHHHHHHhCCCeEEEeeccC---CCcCCC--Cccc
Confidence 4667789999999999863 23678899999996553 23567778889999999999999998 444431 1222
Q ss_pred CC--cccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhh------------
Q 003886 647 VG--SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV------------ 712 (789)
Q Consensus 647 ~~--~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~------------ 712 (789)
.. ..-++|+...++.++.+........+++||||||.+++.++.++|+.+.++|+.+|.+-+..-.
T Consensus 103 i~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~i~~~~kp~p~v~~~l~~ 182 (313)
T KOG1455|consen 103 VPSFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCKISEDTKPHPPVISILTL 182 (313)
T ss_pred CCcHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecccccCCccCCCcHHHHHHHH
Confidence 22 2236888888888888766667789999999999999999999999999999999987542111
Q ss_pred cCCCCCcchhhhhc-------c--------CccccccCCCCChhhH-HHHHh-cCccccCCCCCCCEEEEEeCCCCCCCh
Q 003886 713 GTTDIPDWCYVESY-------G--------SKGKDSFTESPSVEDL-TRFHS-KSPISHISKVKTPTIFLLGAQDLRVPV 775 (789)
Q Consensus 713 ~~~~~~~~~~~~~~-------~--------~~~~~~~~~~~~~~~~-~~~~~-~sp~~~~~~i~~P~Lii~G~~D~~vp~ 775 (789)
...-+|.|.....- . ...--+|.+.|..... +.++. .....++.+++.|.||+||++|.++.+
T Consensus 183 l~~liP~wk~vp~~d~~~~~~kdp~~r~~~~~npl~y~g~pRl~T~~ElLr~~~~le~~l~~vtvPflilHG~dD~VTDp 262 (313)
T KOG1455|consen 183 LSKLIPTWKIVPTKDIIDVAFKDPEKRKILRSDPLCYTGKPRLKTAYELLRVTADLEKNLNEVTVPFLILHGTDDKVTDP 262 (313)
T ss_pred HHHhCCceeecCCccccccccCCHHHHHHhhcCCceecCCccHHHHHHHHHHHHHHHHhcccccccEEEEecCCCcccCc
Confidence 01112333211000 0 0000112222221111 11111 111245788999999999999999999
Q ss_pred HHHHHHHHHCCC
Q 003886 776 SNGLQVIYHIPF 787 (789)
Q Consensus 776 ~~~~~l~~~l~~ 787 (789)
..+++||+....
T Consensus 263 ~~Sk~Lye~A~S 274 (313)
T KOG1455|consen 263 KVSKELYEKASS 274 (313)
T ss_pred HHHHHHHHhccC
Confidence 999999998754
No 44
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=99.62 E-value=4.6e-15 Score=155.78 Aligned_cols=209 Identities=20% Similarity=0.250 Sum_probs=125.3
Q ss_pred cccCceeeEeeecccccceeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEc
Q 003886 549 LSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVN 628 (789)
Q Consensus 549 l~~~~~~~~~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d 628 (789)
+....++.++||+ .|.+|.|+++.|+ ..++.|+||++ ||..+.....+.....+|+.+|++++++|
T Consensus 160 l~~~~i~~v~iP~----------eg~~I~g~LhlP~---~~~p~P~VIv~-gGlDs~qeD~~~l~~~~l~~rGiA~LtvD 225 (411)
T PF06500_consen 160 LSDYPIEEVEIPF----------EGKTIPGYLHLPS---GEKPYPTVIVC-GGLDSLQEDLYRLFRDYLAPRGIAMLTVD 225 (411)
T ss_dssp HSSSEEEEEEEEE----------TTCEEEEEEEESS---SSS-EEEEEEE---TTS-GGGGHHHHHCCCHHCT-EEEEE-
T ss_pred hCCCCcEEEEEee----------CCcEEEEEEEcCC---CCCCCCEEEEe-CCcchhHHHHHHHHHHHHHhCCCEEEEEc
Confidence 3344456666664 3478999999998 56788988876 55554333344444567999999999999
Q ss_pred CCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccc-
Q 003886 629 YRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN- 707 (789)
Q Consensus 629 ~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~- 707 (789)
.+| -|.+....+..+. -.-..++++||.+.+++|.+||+++|.|+||+.+.++|..+++|++|+|+..|+++
T Consensus 226 mPG---~G~s~~~~l~~D~----~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~vh~ 298 (411)
T PF06500_consen 226 MPG---QGESPKWPLTQDS----SRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAPVHH 298 (411)
T ss_dssp -TT---SGGGTTT-S-S-C----CHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES---SC
T ss_pred cCC---CcccccCCCCcCH----HHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCchHhh
Confidence 987 4444322222111 12345789999999999999999999999999999999877889999999988643
Q ss_pred hhh-hhcCCCCCcchhhhhccCccccccCCCC--ChhhH-HHHHhcCcccc--C--CCCCCCEEEEEeCCCCCCChHHHH
Q 003886 708 LAL-MVGTTDIPDWCYVESYGSKGKDSFTESP--SVEDL-TRFHSKSPISH--I--SKVKTPTIFLLGAQDLRVPVSNGL 779 (789)
Q Consensus 708 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~sp~~~--~--~~i~~P~Lii~G~~D~~vp~~~~~ 779 (789)
+.. .......|. .+...+.. .++.. ..+.. .....+|.... + .+.++|+|.+.|++|.++|.+...
T Consensus 299 ~ft~~~~~~~~P~-my~d~LA~-----rlG~~~~~~~~l~~el~~~SLk~qGlL~~rr~~~plL~i~~~~D~v~P~eD~~ 372 (411)
T PF06500_consen 299 FFTDPEWQQRVPD-MYLDVLAS-----RLGMAAVSDESLRGELNKFSLKTQGLLSGRRCPTPLLAINGEDDPVSPIEDSR 372 (411)
T ss_dssp GGH-HHHHTTS-H-HHHHHHHH-----HCT-SCE-HHHHHHHGGGGSTTTTTTTTSS-BSS-EEEEEETT-SSS-HHHHH
T ss_pred hhccHHHHhcCCH-HHHHHHHH-----HhCCccCCHHHHHHHHHhcCcchhccccCCCCCcceEEeecCCCCCCCHHHHH
Confidence 211 011111221 12222211 11111 12222 33456666543 4 567899999999999999999988
Q ss_pred HHHHH
Q 003886 780 QVIYH 784 (789)
Q Consensus 780 ~l~~~ 784 (789)
-++..
T Consensus 373 lia~~ 377 (411)
T PF06500_consen 373 LIAES 377 (411)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 77654
No 45
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=99.62 E-value=1.9e-14 Score=156.22 Aligned_cols=210 Identities=12% Similarity=0.117 Sum_probs=128.3
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~ 646 (789)
.++..++..+....+.|. ..++.|+||++||.+.+ ...|......|+++||.|+++|+|| +|.+........
T Consensus 114 ~~~~~~~~~l~~~~~~p~---~~~~~~~Vl~lHG~~~~--~~~~~~~a~~L~~~Gy~V~~~D~rG---hG~S~~~~~~~~ 185 (395)
T PLN02652 114 LFYGARRNALFCRSWAPA---AGEMRGILIIIHGLNEH--SGRYLHFAKQLTSCGFGVYAMDWIG---HGGSDGLHGYVP 185 (395)
T ss_pred EEECCCCCEEEEEEecCC---CCCCceEEEEECCchHH--HHHHHHHHHHHHHCCCEEEEeCCCC---CCCCCCCCCCCc
Confidence 456667788888888885 34567899999996553 4456677888999999999999998 444332111001
Q ss_pred CCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCC---ceeEEEEeCCccchhhhhc---------C
Q 003886 647 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCNLALMVG---------T 714 (789)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~---~~~a~v~~~pv~~~~~~~~---------~ 714 (789)
......+|+.++++++..+ .+..++.|+|||+||.+++.++. +|+ +++++|+.+|...+..... .
T Consensus 186 ~~~~~~~Dl~~~l~~l~~~--~~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~sP~l~~~~~~~~~~~~~~l~~ 262 (395)
T PLN02652 186 SLDYVVEDTEAFLEKIRSE--NPGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTSPALRVKPAHPIVGAVAPIFS 262 (395)
T ss_pred CHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEECcccccccchHHHHHHHHHHH
Confidence 1112257888888888755 23457999999999999997765 554 7999999999764321000 0
Q ss_pred CCCCcchhhhh--ccCc------c-ccccC------CCCChhhHHHHHhcC--ccccCCCCCCCEEEEEeCCCCCCChHH
Q 003886 715 TDIPDWCYVES--YGSK------G-KDSFT------ESPSVEDLTRFHSKS--PISHISKVKTPTIFLLGAQDLRVPVSN 777 (789)
Q Consensus 715 ~~~~~~~~~~~--~~~~------~-~~~~~------~~~~~~~~~~~~~~s--p~~~~~~i~~P~Lii~G~~D~~vp~~~ 777 (789)
.-.+.+.+... .+.. . ...+. +...........+.. ....+.++++|+|++||++|.++|+++
T Consensus 263 ~~~p~~~~~~~~~~~~~~s~~~~~~~~~~~dp~~~~g~i~~~~~~~~~~~~~~l~~~L~~I~vPvLIi~G~~D~vvp~~~ 342 (395)
T PLN02652 263 LVAPRFQFKGANKRGIPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRISSYLTRNFKSVTVPFMVLHGTADRVTDPLA 342 (395)
T ss_pred HhCCCCcccCcccccCCcCCCHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCCCCCHHH
Confidence 00000000000 0000 0 00000 000000000000000 123467899999999999999999999
Q ss_pred HHHHHHHCCC
Q 003886 778 GLQVIYHIPF 787 (789)
Q Consensus 778 ~~~l~~~l~~ 787 (789)
+.++++.+..
T Consensus 343 a~~l~~~~~~ 352 (395)
T PLN02652 343 SQDLYNEAAS 352 (395)
T ss_pred HHHHHHhcCC
Confidence 9999998753
No 46
>PRK10749 lysophospholipase L2; Provisional
Probab=99.62 E-value=3.4e-14 Score=152.32 Aligned_cols=129 Identities=22% Similarity=0.286 Sum_probs=91.1
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~ 646 (789)
.+...+|..++...+.|. ...++||++||... ....|......|+++||.|+++|+|| +|.+........
T Consensus 34 ~~~~~~g~~l~~~~~~~~-----~~~~~vll~HG~~~--~~~~y~~~~~~l~~~g~~v~~~D~~G---~G~S~~~~~~~~ 103 (330)
T PRK10749 34 EFTGVDDIPIRFVRFRAP-----HHDRVVVICPGRIE--SYVKYAELAYDLFHLGYDVLIIDHRG---QGRSGRLLDDPH 103 (330)
T ss_pred EEEcCCCCEEEEEEccCC-----CCCcEEEEECCccc--hHHHHHHHHHHHHHCCCeEEEEcCCC---CCCCCCCCCCCC
Confidence 455668888888777653 24578999999654 24456667778899999999999998 444322110111
Q ss_pred CCc-cc----HHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccc
Q 003886 647 VGS-QD----VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 707 (789)
Q Consensus 647 ~~~-~~----~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~ 707 (789)
.+. .. ++|+.+.++.+.+. .+..++.++|||+||.+++.++.++|++++++|+.+|...
T Consensus 104 ~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~~~ 167 (330)
T PRK10749 104 RGHVERFNDYVDDLAAFWQQEIQP--GPYRKRYALAHSMGGAILTLFLQRHPGVFDAIALCAPMFG 167 (330)
T ss_pred cCccccHHHHHHHHHHHHHHHHhc--CCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEECchhc
Confidence 111 12 34555555554433 3567899999999999999999999999999999998653
No 47
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=99.61 E-value=9.2e-15 Score=135.39 Aligned_cols=190 Identities=21% Similarity=0.282 Sum_probs=138.9
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHH-HHHHCCcEEEEEcCCCCCCCCchhhccCCC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPG 645 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~-~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~ 645 (789)
++...|..++++|++... ...|+++++|+..+.+ ..+...+. ++.+.++.|+.++||| ||.+.... .
T Consensus 58 ~l~T~D~vtL~a~~~~~E-----~S~pTlLyfh~NAGNm--Ghr~~i~~~fy~~l~mnv~ivsYRG---YG~S~Gsp--s 125 (300)
T KOG4391|consen 58 ELRTRDKVTLDAYLMLSE-----SSRPTLLYFHANAGNM--GHRLPIARVFYVNLKMNVLIVSYRG---YGKSEGSP--S 125 (300)
T ss_pred EEEcCcceeEeeeeeccc-----CCCceEEEEccCCCcc--cchhhHHHHHHHHcCceEEEEEeec---cccCCCCc--c
Confidence 556678899999999832 3889999999966643 22333333 6678999999999998 77654221 1
Q ss_pred CCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhh
Q 003886 646 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 725 (789)
Q Consensus 646 ~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~ 725 (789)
.-| -.-|..++++|+..++..|..++.++|.|.||..++.+|++..+++.|+|+.+.+..+..+....-.+.
T Consensus 126 E~G--L~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~ivENTF~SIp~~~i~~v~p~------ 197 (300)
T KOG4391|consen 126 EEG--LKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAIIVENTFLSIPHMAIPLVFPF------ 197 (300)
T ss_pred ccc--eeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeeeeechhccchhhhhheeccc------
Confidence 222 245889999999999999999999999999999999999999999999999999988755532211110
Q ss_pred ccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 726 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
.. ++ .+.+.... .++-...+.+-+.|.|++.|.+|.+|||-+..+||+...
T Consensus 198 -~~---k~---i~~lc~kn---~~~S~~ki~~~~~P~LFiSGlkDelVPP~~Mr~Ly~~c~ 248 (300)
T KOG4391|consen 198 -PM---KY---IPLLCYKN---KWLSYRKIGQCRMPFLFISGLKDELVPPVMMRQLYELCP 248 (300)
T ss_pred -hh---hH---HHHHHHHh---hhcchhhhccccCceEEeecCccccCCcHHHHHHHHhCc
Confidence 00 00 01111111 233334455778899999999999999999999998765
No 48
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=99.60 E-value=2.3e-14 Score=149.23 Aligned_cols=198 Identities=11% Similarity=0.085 Sum_probs=121.7
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHH-HHCCcEEEEEcC--CCCCCCC----------ch
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFL-SSVGYSLLIVNY--RGSLGFG----------EE 638 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~l-a~~Gy~V~~~d~--rGs~G~G----------~~ 638 (789)
-+.++...++.|+++. .+++|+|+++||.+.+.....+....+.+ ++.||.|++||. ||.+-.| ..
T Consensus 23 ~~~~~~~~v~~P~~~~-~~~~P~vvllHG~~~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~~~g~~~~~~~~~w~~g~~~~ 101 (275)
T TIGR02821 23 CGVPMTFGVFLPPQAA-AGPVPVLWYLSGLTCTHENFMIKAGAQRFAAEHGLALVAPDTSPRGTGIAGEDDAWDFGKGAG 101 (275)
T ss_pred cCCceEEEEEcCCCcc-CCCCCEEEEccCCCCCccHHHhhhHHHHHHhhcCcEEEEeCCCCCcCCCCCCcccccccCCcc
Confidence 4567888999998643 45689999999977643222222233444 467999999997 5532111 11
Q ss_pred hh-ccCCCCCC--cccHHHHHHHHHHHHHc-CCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcC
Q 003886 639 AL-QSLPGKVG--SQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT 714 (789)
Q Consensus 639 ~~-~~~~~~~~--~~~~~D~~~~i~~l~~~-~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~ 714 (789)
+. +.....+. ......+.+.+..+++. ..+|.++++|+|+|+||++++.++.++|++|+++++.+|+.+....
T Consensus 102 ~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~~~~~~--- 178 (275)
T TIGR02821 102 FYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDRFKSVSAFAPIVAPSRC--- 178 (275)
T ss_pred ccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCcccceEEEEECCccCcccC---
Confidence 10 00000011 11123334444444443 3478899999999999999999999999999999999999764211
Q ss_pred CCCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCC--CCCCCEEEEEeCCCCCCCh-HHHHHHHHHCCC
Q 003886 715 TDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHIS--KVKTPTIFLLGAQDLRVPV-SNGLQVIYHIPF 787 (789)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~--~i~~P~Lii~G~~D~~vp~-~~~~~l~~~l~~ 787 (789)
.+.. . ....+.+... +.+...+|...+. +...|++++||++|..||. .++..+.++|++
T Consensus 179 ----~~~~-~-----~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~plli~~G~~D~~v~~~~~~~~~~~~l~~ 240 (275)
T TIGR02821 179 ----PWGQ-K-----AFSAYLGADE----AAWRSYDASLLVADGGRHSTILIDQGTADQFLDEQLRPDAFEQACRA 240 (275)
T ss_pred ----cchH-H-----HHHHHhcccc----cchhhcchHHHHhhcccCCCeeEeecCCCcccCccccHHHHHHHHHH
Confidence 1110 0 0111111111 1122344444333 3467999999999999999 688888888764
No 49
>PRK10985 putative hydrolase; Provisional
Probab=99.59 E-value=5.1e-14 Score=150.43 Aligned_cols=208 Identities=13% Similarity=0.131 Sum_probs=124.6
Q ss_pred ecCCCeeEEEEEE-ecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCC
Q 003886 569 TKGAQKPFEAIFV-SSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (789)
Q Consensus 569 ~~~~g~~l~~~~~-~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~ 647 (789)
+..||..+..... .|. ...+.|+||++||.+++.........+..|+++||.|+++|+||.+|..... ....
T Consensus 37 ~~~dg~~~~l~w~~~~~---~~~~~p~vll~HG~~g~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~~~~~----~~~~ 109 (324)
T PRK10985 37 ELPDGDFVDLAWSEDPA---QARHKPRLVLFHGLEGSFNSPYAHGLLEAAQKRGWLGVVMHFRGCSGEPNRL----HRIY 109 (324)
T ss_pred ECCCCCEEEEecCCCCc---cCCCCCEEEEeCCCCCCCcCHHHHHHHHHHHHCCCEEEEEeCCCCCCCccCC----cceE
Confidence 3446655543322 232 2345799999999876543333344677899999999999999954432111 1111
Q ss_pred CcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCc--eeEEEEeCCccchhhhhcCCC-----CCcc
Q 003886 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK--FVAAAARNPLCNLALMVGTTD-----IPDW 720 (789)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~--~~a~v~~~pv~~~~~~~~~~~-----~~~~ 720 (789)
.....+|+.++++++.++ ....++.++|||+||.+++.+++++++. ++++|+.++..++........ ....
T Consensus 110 ~~~~~~D~~~~i~~l~~~--~~~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~~~~~~~~~~~~~~~~~~ 187 (324)
T PRK10985 110 HSGETEDARFFLRWLQRE--FGHVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLMLEACSYRMEQGFSRVYQR 187 (324)
T ss_pred CCCchHHHHHHHHHHHHh--CCCCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCCHHHHHHHHhhhHHHHHHH
Confidence 223478999999999886 3456899999999999888877776543 788888877655421100000 0000
Q ss_pred hhhhh-----------ccCc------------ccccc---CCCC---ChhhHHHHHhcCccccCCCCCCCEEEEEeCCCC
Q 003886 721 CYVES-----------YGSK------------GKDSF---TESP---SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 771 (789)
Q Consensus 721 ~~~~~-----------~~~~------------~~~~~---~~~~---~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~ 771 (789)
.+... +... .++.+ ...+ .....+.|...+....+.++++|+|+|+|++|+
T Consensus 188 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~~~g~~~~~~~y~~~~~~~~l~~i~~P~lii~g~~D~ 267 (324)
T PRK10985 188 YLLNLLKANAARKLAAYPGTLPINLAQLKSVRRLREFDDLITARIHGFADAIDYYRQCSALPLLNQIRKPTLIIHAKDDP 267 (324)
T ss_pred HHHHHHHHHHHHHHHhccccccCCHHHHhcCCcHHHHhhhheeccCCCCCHHHHHHHCChHHHHhCCCCCEEEEecCCCC
Confidence 00000 0000 00000 0000 012234455666666789999999999999999
Q ss_pred CCChHHHHHHHHHC
Q 003886 772 RVPVSNGLQVIYHI 785 (789)
Q Consensus 772 ~vp~~~~~~l~~~l 785 (789)
+++++....+.+..
T Consensus 268 ~~~~~~~~~~~~~~ 281 (324)
T PRK10985 268 FMTHEVIPKPESLP 281 (324)
T ss_pred CCChhhChHHHHhC
Confidence 99988777665444
No 50
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=99.59 E-value=6.3e-15 Score=153.27 Aligned_cols=209 Identities=16% Similarity=0.157 Sum_probs=132.5
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHH--H------HHHHHHCCcEEEEEcCCCCCCCCchhhccC
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK--S------LAFLSSVGYSLLIVNYRGSLGFGEEALQSL 643 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~--~------~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~ 643 (789)
||.+|.+.+++| +.+..++.|+||..|+.........-.. . ...|+++||+|+.+|.||.++.+..+...
T Consensus 1 DGv~L~adv~~P-~~~~~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~RG~g~S~G~~~~~- 78 (272)
T PF02129_consen 1 DGVRLAADVYRP-GADGGGPFPVILTRTPYGKGDQTASDLAGANPGPPSARRPFAERGYAVVVQDVRGTGGSEGEFDPM- 78 (272)
T ss_dssp TS-EEEEEEEEE---TTSSSEEEEEEEESSTCTC-HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-TTSTTS-S-B-TT-
T ss_pred CCCEEEEEEEec-CCCCCCcccEEEEccCcCCCCCcccchhhhhcccchhHHHHHhCCCEEEEECCcccccCCCccccC-
Confidence 689999999999 4457899999999998553211111111 0 12399999999999999976655544221
Q ss_pred CCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhh-hhcCCCC-----
Q 003886 644 PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-MVGTTDI----- 717 (789)
Q Consensus 644 ~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~-~~~~~~~----- 717 (789)
...+.+|..++|+|+.++++. ..||+++|.||+|+.++.+|...|..+||++...+..|+.. .....-.
T Consensus 79 ----~~~e~~D~~d~I~W~~~Qpws-~G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~~~~~~gG~~~~~~ 153 (272)
T PF02129_consen 79 ----SPNEAQDGYDTIEWIAAQPWS-NGKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYRDSIYPGGAFRLGF 153 (272)
T ss_dssp ----SHHHHHHHHHHHHHHHHCTTE-EEEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCCTSSEETTEEBCCH
T ss_pred ----ChhHHHHHHHHHHHHHhCCCC-CCeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccccchhcCCcccccc
Confidence 566899999999999999765 46999999999999999999978889999999998887654 2111111
Q ss_pred -Ccchhhhhc----cC---c-----------------cccccCCCC--------ChhhHHHHHhcCccccCCCCCCCEEE
Q 003886 718 -PDWCYVESY----GS---K-----------------GKDSFTESP--------SVEDLTRFHSKSPISHISKVKTPTIF 764 (789)
Q Consensus 718 -~~~~~~~~~----~~---~-----------------~~~~~~~~~--------~~~~~~~~~~~sp~~~~~~i~~P~Li 764 (789)
..|...... .. . .+....... .....+.+.+.++...+.++++|+|+
T Consensus 154 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~i~vP~l~ 233 (272)
T PF02129_consen 154 FAGWEDLQSQQEDPQSRPAPDRDYLRERARYEALGDSPLGRLPRDPPYWDEWLDHPPYDPFWQERSPSERLDKIDVPVLI 233 (272)
T ss_dssp HHHHHHHHHHHHHHTCCCCSSSHHHHHHHHHHCHHHHHHHHCHGGTHHHHHHHHT-SSSHHHHTTBHHHHHGG--SEEEE
T ss_pred hhHHHHHHHHhhcccCCCchhhhhhhhhhhhhhhhhHHHhhhccccHHHHHHHhCCCcCHHHHhCChHHHHhhCCCCEEE
Confidence 112000000 00 0 000000000 00111234445555567899999999
Q ss_pred EEeCCCCCCChHHHHHHHHHCCCC
Q 003886 765 LLGAQDLRVPVSNGLQVIYHIPFS 788 (789)
Q Consensus 765 i~G~~D~~vp~~~~~~l~~~l~~~ 788 (789)
++|-.|.... .++.+.|++|++.
T Consensus 234 v~Gw~D~~~~-~~~~~~~~~l~~~ 256 (272)
T PF02129_consen 234 VGGWYDTLFL-RGALRAYEALRAP 256 (272)
T ss_dssp EEETTCSSTS-HHHHHHHHHHCTT
T ss_pred ecccCCcccc-hHHHHHHHHhhcC
Confidence 9999997777 8999999998754
No 51
>COG1647 Esterase/lipase [General function prediction only]
Probab=99.58 E-value=1.4e-14 Score=135.90 Aligned_cols=177 Identities=20% Similarity=0.248 Sum_probs=121.2
Q ss_pred cEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCcc
Q 003886 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 672 (789)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 672 (789)
.+|+++||..++ .........+|.++||.|.+|+|+|.+--.+.+.+..+.+| ++|+.++.++|.+.++ +.
T Consensus 16 ~AVLllHGFTGt--~~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~~~DW----~~~v~d~Y~~L~~~gy---~e 86 (243)
T COG1647 16 RAVLLLHGFTGT--PRDVRMLGRYLNENGYTVYAPRYPGHGTLPEDFLKTTPRDW----WEDVEDGYRDLKEAGY---DE 86 (243)
T ss_pred EEEEEEeccCCC--cHHHHHHHHHHHHCCceEecCCCCCCCCCHHHHhcCCHHHH----HHHHHHHHHHHHHcCC---Ce
Confidence 889999997664 56777788999999999999999985444445554433333 7899999999998863 68
Q ss_pred EEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCc-chhhhhccCccccccCCCCChhhHHHHHhc--
Q 003886 673 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPD-WCYVESYGSKGKDSFTESPSVEDLTRFHSK-- 749 (789)
Q Consensus 673 v~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 749 (789)
|.|+|.||||.+++.++.++| .|++|..++..+....... +.. ..+.+. .+.+.+.......+.+..+
T Consensus 87 I~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~~~~i--ie~~l~y~~~-----~kk~e~k~~e~~~~e~~~~~~ 157 (243)
T COG1647 87 IAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKSWRII--IEGLLEYFRN-----AKKYEGKDQEQIDKEMKSYKD 157 (243)
T ss_pred EEEEeecchhHHHHHHHhhCC--ccceeeecCCcccccchhh--hHHHHHHHHH-----hhhccCCCHHHHHHHHHHhhc
Confidence 999999999999999999988 7777777665442111000 000 000011 1111111111111112211
Q ss_pred --------------CccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 750 --------------SPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 750 --------------sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.....+..|..|+|+++|.+|++||.+.+..+|+.+..
T Consensus 158 ~~~~~~~~~~~~i~~~~~~~~~I~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s 209 (243)
T COG1647 158 TPMTTTAQLKKLIKDARRSLDKIYSPTLVVQGRQDEMVPAESANFIYDHVES 209 (243)
T ss_pred chHHHHHHHHHHHHHHHhhhhhcccchhheecccCCCCCHHHHHHHHHhccC
Confidence 22356788999999999999999999999999998754
No 52
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.58 E-value=2.3e-12 Score=132.03 Aligned_cols=187 Identities=17% Similarity=0.094 Sum_probs=138.9
Q ss_pred eeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceE
Q 003886 259 WEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 338 (789)
Q Consensus 259 ~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~ 338 (789)
|..--|+.++...+.+.|+++...|-+.++ .....+....+.-|++. ++...++.+ .|-
T Consensus 327 fa~~~Gd~ia~VSRGkaFi~~~~~~~~iqv---~~~~~VrY~r~~~~~e~----~vigt~dgD--------------~l~ 385 (668)
T COG4946 327 FAVVNGDYIALVSRGKAFIMRPWDGYSIQV---GKKGGVRYRRIQVDPEG----DVIGTNDGD--------------KLG 385 (668)
T ss_pred hccCCCcEEEEEecCcEEEECCCCCeeEEc---CCCCceEEEEEccCCcc----eEEeccCCc--------------eEE
Confidence 333336666666788899999888888777 34455777788888887 776664333 577
Q ss_pred EEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCC
Q 003886 339 AVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 418 (789)
Q Consensus 339 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~ 418 (789)
++|. ++++.+++..+.+.+.....|||||+++..-+ ..+||++|+++|..+.
T Consensus 386 iyd~-----------------~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNd-----------r~el~vididngnv~~ 437 (668)
T COG4946 386 IYDK-----------------DGGEVKRIEKDLGNIEAVKVSPDGKKVVVAND-----------RFELWVIDIDNGNVRL 437 (668)
T ss_pred EEec-----------------CCceEEEeeCCccceEEEEEcCCCcEEEEEcC-----------ceEEEEEEecCCCeeE
Confidence 8887 88899999999999999999999998875443 3579999999988765
Q ss_pred cccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeC-CeEEEEEEECCCCcEEEecCCCCCceeEEeee
Q 003886 419 SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG-SSQVIISVNVSSGELLRITPAESNFSWSLLTL 497 (789)
Q Consensus 419 ~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~-~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~ 497 (789)
+-.....+ +..+.|+|+++.|.+.-..+ -.++|-..|++++++-.+|...+.-..++|.+
T Consensus 438 idkS~~~l-------------------Itdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~ 498 (668)
T COG4946 438 IDKSEYGL-------------------ITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDP 498 (668)
T ss_pred ecccccce-------------------eEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCC
Confidence 44333222 34678999999887765433 24567778888999999988766333479999
Q ss_pred cCCEEEEEEeCCCCCC
Q 003886 498 DGDNIIAVSSSPVDVP 513 (789)
Q Consensus 498 dg~~l~~~~ss~~~p~ 513 (789)
||++|+|.+...-+|.
T Consensus 499 d~ryLYfLs~RsLdPs 514 (668)
T COG4946 499 DGRYLYFLSARSLDPS 514 (668)
T ss_pred CCcEEEEEeccccCCC
Confidence 9999999987666554
No 53
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.57 E-value=2.3e-13 Score=135.75 Aligned_cols=281 Identities=20% Similarity=0.274 Sum_probs=175.1
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
+.+...+|||+|++|+.-+.+ +...+|+-....+...+.+.. . |...++|||||++||..+.+....
T Consensus 116 e~Vl~~~fsp~g~~l~tGsGD-----~TvR~WD~~TeTp~~t~KgH~-~------WVlcvawsPDgk~iASG~~dg~I~- 182 (480)
T KOG0271|consen 116 EAVLSVQFSPTGSRLVTGSGD-----TTVRLWDLDTETPLFTCKGHK-N------WVLCVAWSPDGKKIASGSKDGSIR- 182 (480)
T ss_pred CcEEEEEecCCCceEEecCCC-----ceEEeeccCCCCcceeecCCc-c------EEEEEEECCCcchhhccccCCeEE-
Confidence 447788999999999864332 356778543334444443332 2 458999999999999988776433
Q ss_pred CCccCCC-CCCCCCCcCCCCCCCcceeeCCc-----ccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCC
Q 003886 234 PTFSLGS-TKGGSSDKDCNSWKGQGDWEEDW-----GETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 307 (789)
Q Consensus 234 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~-----g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~ 307 (789)
.|+... ...+..+..+..|+....|+|-. +...+..+++.+.+||+..|...... ......+.-+.|--+|
T Consensus 183 -lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l-sgHT~~VTCvrwGG~g- 259 (480)
T KOG0271|consen 183 -LWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL-SGHTASVTCVRWGGEG- 259 (480)
T ss_pred -EecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe-ccCccceEEEEEcCCc-
Confidence 455332 34567778888999887786532 33345556899999999988766552 3334567788886543
Q ss_pred CCccEEEEEeecCCcee----eeeeeecc---------------------------------------------------
Q 003886 308 GLHQYLVFVGWSSETRK----LGIKYCYN--------------------------------------------------- 332 (789)
Q Consensus 308 ~~~~~l~f~~~~~~~~~----~g~~~~~~--------------------------------------------------- 332 (789)
++|.+..+..-+ ..-+.|..
T Consensus 260 -----liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~ 334 (480)
T KOG0271|consen 260 -----LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKD 334 (480)
T ss_pred -----eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhcc
Confidence 666653322000 00000000
Q ss_pred ---------CCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCcccc
Q 003886 333 ---------RPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSAT 403 (789)
Q Consensus 333 ---------~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~ 403 (789)
....||+++. ......+.++|.+..-+.+..|||||++||..+-+.
T Consensus 335 ~~erlVSgsDd~tlflW~p---------------~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk---------- 389 (480)
T KOG0271|consen 335 SGERLVSGSDDFTLFLWNP---------------FKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDK---------- 389 (480)
T ss_pred CcceeEEecCCceEEEecc---------------cccccchhhhhchhhheeeEEECCCccEEEEeeccc----------
Confidence 0011222221 112234456777777788999999999999888654
Q ss_pred ceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEe
Q 003886 404 DSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 483 (789)
Q Consensus 404 ~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~l 483 (789)
.+.+||-.+|+-...-.+. ...++.++||.|.+ |+++.+.+....+|.+ .+.++..=
T Consensus 390 -SVkLW~g~tGk~lasfRGH-------------------v~~VYqvawsaDsR-LlVS~SkDsTLKvw~V--~tkKl~~D 446 (480)
T KOG0271|consen 390 -SVKLWDGRTGKFLASFRGH-------------------VAAVYQVAWSADSR-LLVSGSKDSTLKVWDV--RTKKLKQD 446 (480)
T ss_pred -ceeeeeCCCcchhhhhhhc-------------------cceeEEEEeccCcc-EEEEcCCCceEEEEEe--eeeeeccc
Confidence 4788887776653211111 12356789999987 7788777776666655 47777655
Q ss_pred cCCCC-CceeEEeeecCCEEE
Q 003886 484 TPAES-NFSWSLLTLDGDNII 503 (789)
Q Consensus 484 t~~~~-~~~~~~~s~dg~~l~ 503 (789)
.+++. .+....++|||+.++
T Consensus 447 LpGh~DEVf~vDwspDG~rV~ 467 (480)
T KOG0271|consen 447 LPGHADEVFAVDWSPDGQRVA 467 (480)
T ss_pred CCCCCceEEEEEecCCCceee
Confidence 55443 455568999998764
No 54
>PLN02511 hydrolase
Probab=99.57 E-value=8.2e-14 Score=151.97 Aligned_cols=211 Identities=17% Similarity=0.206 Sum_probs=125.2
Q ss_pred eecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCC
Q 003886 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (789)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~ 647 (789)
+...||..+....+.+.........|+||++||..++.....+......+.++||.|+++|+||.++ +.... +..+
T Consensus 76 l~~~DG~~~~ldw~~~~~~~~~~~~p~vvllHG~~g~s~~~y~~~~~~~~~~~g~~vv~~d~rG~G~---s~~~~-~~~~ 151 (388)
T PLN02511 76 LRTPDGGAVALDWVSGDDRALPADAPVLILLPGLTGGSDDSYVRHMLLRARSKGWRVVVFNSRGCAD---SPVTT-PQFY 151 (388)
T ss_pred EECCCCCEEEEEecCcccccCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEecCCCCC---CCCCC-cCEE
Confidence 3445666666433332211123457899999997665332222335566778999999999999443 32111 1112
Q ss_pred CcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCc--eeEEEEeCCccchhh----hhcC-CCCCcc
Q 003886 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK--FVAAAARNPLCNLAL----MVGT-TDIPDW 720 (789)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~--~~a~v~~~pv~~~~~----~~~~-~~~~~~ 720 (789)
.....+|+.++++++..+ ....++.++|||+||.+++.++.+++++ ++++++.++..++.. +... ......
T Consensus 152 ~~~~~~Dl~~~i~~l~~~--~~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~~l~~~~~~~~~~~~~~y~~ 229 (388)
T PLN02511 152 SASFTGDLRQVVDHVAGR--YPSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPFDLVIADEDFHKGFNNVYDK 229 (388)
T ss_pred cCCchHHHHHHHHHHHHH--CCCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCCcCHHHHHHHHhccHHHHHHH
Confidence 234478999999999876 3456899999999999999999999886 777777766554311 0000 000000
Q ss_pred hhh----h-------hcc------------C-cccccc--------CCCCChhhHHHHHhcCccccCCCCCCCEEEEEeC
Q 003886 721 CYV----E-------SYG------------S-KGKDSF--------TESPSVEDLTRFHSKSPISHISKVKTPTIFLLGA 768 (789)
Q Consensus 721 ~~~----~-------~~~------------~-~~~~~~--------~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~ 768 (789)
.+. . .+. . ..+..+ .+.. ...+.|.+.++...+.+|++|+|+|+|+
T Consensus 230 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~t~~~~gf~--~~~~yy~~~s~~~~L~~I~vPtLiI~g~ 307 (388)
T PLN02511 230 ALAKALRKIFAKHALLFEGLGGEYNIPLVANAKTVRDFDDGLTRVSFGFK--SVDAYYSNSSSSDSIKHVRVPLLCIQAA 307 (388)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCccCHHHHHhCCCHHHHHHhhhhhcCCCC--CHHHHHHHcCchhhhccCCCCeEEEEcC
Confidence 000 0 000 0 000000 0000 1112345667777899999999999999
Q ss_pred CCCCCChHHH-HHHHHHCC
Q 003886 769 QDLRVPVSNG-LQVIYHIP 786 (789)
Q Consensus 769 ~D~~vp~~~~-~~l~~~l~ 786 (789)
+|+++|++.. ..+.+.++
T Consensus 308 dDpi~p~~~~~~~~~~~~p 326 (388)
T PLN02511 308 NDPIAPARGIPREDIKANP 326 (388)
T ss_pred CCCcCCcccCcHhHHhcCC
Confidence 9999998754 33444443
No 55
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=99.56 E-value=4.7e-14 Score=138.39 Aligned_cols=190 Identities=22% Similarity=0.202 Sum_probs=119.4
Q ss_pred EEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHH--HHHHHH-HCCcEEEEEcCCCCCCCCchhhc-cCCCCCCcccH
Q 003886 577 EAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK--SLAFLS-SVGYSLLIVNYRGSLGFGEEALQ-SLPGKVGSQDV 652 (789)
Q Consensus 577 ~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~--~~~~la-~~Gy~V~~~d~rGs~G~G~~~~~-~~~~~~~~~~~ 652 (789)
...+|.|++.. ..+.|+||++||+..+ ...|.. .+..++ ++||+|+.|+..........|.- ......+..+.
T Consensus 2 ~Y~lYvP~~~~-~~~~PLVv~LHG~~~~--a~~~~~~s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~~~~~~g~~d~ 78 (220)
T PF10503_consen 2 SYRLYVPPGAP-RGPVPLVVVLHGCGQS--AEDFAAGSGWNALADREGFIVVYPEQSRRANPQGCWNWFSDDQQRGGGDV 78 (220)
T ss_pred cEEEecCCCCC-CCCCCEEEEeCCCCCC--HHHHHhhcCHHHHhhcCCeEEEcccccccCCCCCcccccccccccCccch
Confidence 35688888653 3478999999997664 344432 234555 68999999996422111122210 01123344567
Q ss_pred HHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCcccc
Q 003886 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKD 732 (789)
Q Consensus 653 ~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (789)
..+.+.++++.++..+|++||.++|+|.||+|+..++..+||+|.++...+++..-... ..... ...+.. +
T Consensus 79 ~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~~~~a~---~~~~a---~~~m~~-g-- 149 (220)
T PF10503_consen 79 AFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVPYGCAA---SGASA---LSAMRS-G-- 149 (220)
T ss_pred hhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeeccccccccc---CcccH---HHHhhC-C--
Confidence 77888999999988899999999999999999999999999999999988886421110 00000 000000 0
Q ss_pred ccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHC
Q 003886 733 SFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHI 785 (789)
Q Consensus 733 ~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l 785 (789)
..+.......-...+ .... ..|++|+||+.|..|.+.++.++.+..
T Consensus 150 ---~~~~p~~~~~a~~~~--g~~~--~~P~~v~hG~~D~tV~~~n~~~~~~q~ 195 (220)
T PF10503_consen 150 ---PRPAPAAAWGARSDA--GAYP--GYPRIVFHGTADTTVNPQNADQLVAQW 195 (220)
T ss_pred ---CCCChHHHHHhhhhc--cCCC--CCCEEEEecCCCCccCcchHHHHHHHH
Confidence 001101101111111 1112 249999999999999999999887764
No 56
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.55 E-value=2.4e-13 Score=146.85 Aligned_cols=262 Identities=17% Similarity=0.183 Sum_probs=162.2
Q ss_pred CCCCCeEEEEecCCC-----CCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCC
Q 003886 162 SPSGSKLLVVRNPEN-----ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235 (789)
Q Consensus 162 SPdG~~la~~~~~~~-----~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~ 235 (789)
||||+++++..+... ....+++.+ ..++..++....... ..+.|||||++|||+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~----------~~~~~sP~g~~~~~v~--------- 61 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKL----------QDAKWSPDGKYIAFVR--------- 61 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTB----------SEEEE-SSSTEEEEEE---------
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCcccc----------ccceeecCCCeeEEEe---------
Confidence 899999999765431 223455555 444444443331222 7899999999999983
Q ss_pred ccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCC----------------C-ccc
Q 003886 236 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS----------------L-SVG 298 (789)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~----------------~-~~~ 298 (789)
+.+||+.+..+++.++|+ ..+. + ...
T Consensus 62 ------------------------------------~~nly~~~~~~~~~~~lT-~dg~~~i~nG~~dwvyeEEv~~~~~ 104 (353)
T PF00930_consen 62 ------------------------------------DNNLYLRDLATGQETQLT-TDGEPGIYNGVPDWVYEEEVFDRRS 104 (353)
T ss_dssp ------------------------------------TTEEEEESSTTSEEEESE-S--TTTEEESB--HHHHHHTSSSSB
T ss_pred ------------------------------------cCceEEEECCCCCeEEec-cccceeEEcCccceecccccccccc
Confidence 367999999888888885 1110 1 234
Q ss_pred eEEEeeCCCCCccEEEEEeecCCc-ee----------------eeeee----eccCCcceEEEecccccchhhhhhhhcC
Q 003886 299 QVVWAPLNEGLHQYLVFVGWSSET-RK----------------LGIKY----CYNRPCALYAVRVSLYKSEASELELKES 357 (789)
Q Consensus 299 ~~~wSPDg~~~~~~l~f~~~~~~~-~~----------------~g~~~----~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 357 (789)
.+.|||||++ |+|....... +. .-+.| ..|....|+++|+
T Consensus 105 ~~~WSpd~~~----la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~--------------- 165 (353)
T PF00930_consen 105 AVWWSPDSKY----LAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDL--------------- 165 (353)
T ss_dssp SEEE-TTSSE----EEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEES---------------
T ss_pred ceEECCCCCE----EEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEEC---------------
Confidence 6789999999 9998754431 11 11111 1133345777777
Q ss_pred CCCCCCeeecC------CCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeee
Q 003886 358 SSEDLPVVNLT------ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 431 (789)
Q Consensus 358 ~~~~~~~~~Lt------~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~ 431 (789)
++++...+. ........+.|++|++.|++...... .....|.++|..++..+.+....
T Consensus 166 --~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~------q~~~~l~~~d~~tg~~~~~~~e~-------- 229 (353)
T PF00930_consen 166 --ASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRD------QNRLDLVLCDASTGETRVVLEET-------- 229 (353)
T ss_dssp --SSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETT------STEEEEEEEEECTTTCEEEEEEE--------
T ss_pred --CCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccC------CCEEEEEEEECCCCceeEEEEec--------
Confidence 455443332 23445778999999997766654432 24457888898775553221110
Q ss_pred ccCCCCCccccccCCCCCccc-cCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCc-eeEEeeecCCEEEEEEeCC
Q 003886 432 CAEGDCFPGLYSSSILSNPWL-SDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNF-SWSLLTLDGDNIIAVSSSP 509 (789)
Q Consensus 432 ~~~~~~f~g~~~~~~~~~~ws-~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~-~~~~~s~dg~~l~~~~ss~ 509 (789)
.+ .|......+.|. +++..+++.+...|..+||.++.+++..++||.+...+ ....++.+++.|+|++...
T Consensus 230 ------~~-~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~ 302 (353)
T PF00930_consen 230 ------SD-GWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGD 302 (353)
T ss_dssp ------SS-SSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSG
T ss_pred ------CC-cceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCC
Confidence 00 122222334454 88899999998889999999999999999999888755 3457788889999998763
Q ss_pred C-CCCeEEEEeec
Q 003886 510 V-DVPQVKYGYFV 521 (789)
Q Consensus 510 ~-~p~~i~~~~~~ 521 (789)
. .-..||++++.
T Consensus 303 ~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 303 NPGERHLYRVSLD 315 (353)
T ss_dssp GTTSBEEEEEETT
T ss_pred CCCceEEEEEEeC
Confidence 3 23457777766
No 57
>PRK00870 haloalkane dehalogenase; Provisional
Probab=99.54 E-value=3.6e-13 Score=142.85 Aligned_cols=105 Identities=21% Similarity=0.357 Sum_probs=79.4
Q ss_pred CCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCC
Q 003886 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (789)
..|.||++||.+. ....|......|.+.||.|+++|+|| +|.+.... .......++..+.+..++++ ++.
T Consensus 45 ~~~~lvliHG~~~--~~~~w~~~~~~L~~~gy~vi~~Dl~G---~G~S~~~~---~~~~~~~~~~a~~l~~~l~~--l~~ 114 (302)
T PRK00870 45 DGPPVLLLHGEPS--WSYLYRKMIPILAAAGHRVIAPDLIG---FGRSDKPT---RREDYTYARHVEWMRSWFEQ--LDL 114 (302)
T ss_pred CCCEEEEECCCCC--chhhHHHHHHHHHhCCCEEEEECCCC---CCCCCCCC---CcccCCHHHHHHHHHHHHHH--cCC
Confidence 3578999999765 35577778888988899999999998 66553211 11123455666666655554 456
Q ss_pred ccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
+++.|+|||+||.++..++.++|++++++|+.++.
T Consensus 115 ~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 149 (302)
T PRK00870 115 TDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANTG 149 (302)
T ss_pred CCEEEEEEChHHHHHHHHHHhChhheeEEEEeCCC
Confidence 78999999999999999999999999999998864
No 58
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=99.54 E-value=3.3e-13 Score=140.86 Aligned_cols=207 Identities=15% Similarity=0.192 Sum_probs=129.2
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~ 646 (789)
.+...||..+....+.+. ..+..+||++||.... ...|...+..|..+||.|+++|.|| +|.+.+ ...+.
T Consensus 13 ~~~~~d~~~~~~~~~~~~----~~~~g~Vvl~HG~~Eh--~~ry~~la~~l~~~G~~V~~~D~RG---hG~S~r-~~rg~ 82 (298)
T COG2267 13 YFTGADGTRLRYRTWAAP----EPPKGVVVLVHGLGEH--SGRYEELADDLAARGFDVYALDLRG---HGRSPR-GQRGH 82 (298)
T ss_pred eeecCCCceEEEEeecCC----CCCCcEEEEecCchHH--HHHHHHHHHHHHhCCCEEEEecCCC---CCCCCC-CCcCC
Confidence 455668888888888764 2233899999996653 5567778889999999999999999 454432 11222
Q ss_pred CCcccHHHHHHHHHHHHHcCC--CCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhh--hhc------C--
Q 003886 647 VGSQDVNDVLTAIDHVIDMGL--ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL--MVG------T-- 714 (789)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~~--~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~--~~~------~-- 714 (789)
.. .+++....++.+++.-. ....+++|+||||||.+++.++.+++..++++|+.+|...+.. ... .
T Consensus 83 ~~--~f~~~~~dl~~~~~~~~~~~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~l~~~~~~~~~~~~~~~~ 160 (298)
T COG2267 83 VD--SFADYVDDLDAFVETIAEPDPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALGLGGAILRLILARLALKL 160 (298)
T ss_pred ch--hHHHHHHHHHHHHHHHhccCCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECccccCChhHHHHHHHHHhccc
Confidence 22 14444444444444311 2457899999999999999999999999999999999887652 100 0
Q ss_pred -C-CCCcchhhhhccCccccccCCCCChhhHHHHHhcCc-----------------------cccCCCCCCCEEEEEeCC
Q 003886 715 -T-DIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSP-----------------------ISHISKVKTPTIFLLGAQ 769 (789)
Q Consensus 715 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-----------------------~~~~~~i~~P~Lii~G~~ 769 (789)
. ..+.+.... -.......-......+..+.| ..+| .....+++.|+||+||++
T Consensus 161 ~~~~~p~~~~~~-~~~~~~~~~~~sr~~~~~~~~-~~dP~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~PvLll~g~~ 238 (298)
T COG2267 161 LGRIRPKLPVDS-NLLEGVLTDDLSRDPAEVAAY-EADPLIGVGGPVSRWVDLALLAGRVPALRDAPAIALPVLLLQGGD 238 (298)
T ss_pred ccccccccccCc-ccccCcCcchhhcCHHHHHHH-hcCCccccCCccHHHHHHHHHhhcccchhccccccCCEEEEecCC
Confidence 0 000110000 000000000000011111111 1122 122567789999999999
Q ss_pred CCCCC-hHHHHHHHHHCCC
Q 003886 770 DLRVP-VSNGLQVIYHIPF 787 (789)
Q Consensus 770 D~~vp-~~~~~~l~~~l~~ 787 (789)
|.+|+ .+...++++++..
T Consensus 239 D~vv~~~~~~~~~~~~~~~ 257 (298)
T COG2267 239 DRVVDNVEGLARFFERAGS 257 (298)
T ss_pred CccccCcHHHHHHHHhcCC
Confidence 99999 7999999988753
No 59
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=99.53 E-value=1.2e-13 Score=157.89 Aligned_cols=132 Identities=16% Similarity=0.128 Sum_probs=102.8
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCc-hhh-HHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCC
Q 003886 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSY-SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (789)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~-~~~-~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~ 647 (789)
..||.+|.+.++.|+ ..++.|+||++||....... ..+ ......|+++||+|+++|+||.++.+..+. ..
T Consensus 3 ~~DG~~L~~~~~~P~---~~~~~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~~-----~~ 74 (550)
T TIGR00976 3 MRDGTRLAIDVYRPA---GGGPVPVILSRTPYGKDAGLRWGLDKTEPAWFVAQGYAVVIQDTRGRGASEGEFD-----LL 74 (550)
T ss_pred CCCCCEEEEEEEecC---CCCCCCEEEEecCCCCchhhccccccccHHHHHhCCcEEEEEeccccccCCCceE-----ec
Confidence 358899999999997 34589999999985543210 111 123568999999999999999654433221 12
Q ss_pred CcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhh
Q 003886 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 710 (789)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~ 710 (789)
+..+.+|+.++++|+.++++.+ .+|+++|+||||++++.++..+|+.++|+|+.++..++..
T Consensus 75 ~~~~~~D~~~~i~~l~~q~~~~-~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d~~~ 136 (550)
T TIGR00976 75 GSDEAADGYDLVDWIAKQPWCD-GNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWDLYR 136 (550)
T ss_pred CcccchHHHHHHHHHHhCCCCC-CcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccchhH
Confidence 2457899999999999998766 6999999999999999999988999999999999887653
No 60
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=99.52 E-value=1.8e-13 Score=143.68 Aligned_cols=184 Identities=19% Similarity=0.323 Sum_probs=106.9
Q ss_pred CcEEEEEcCCCCCCCchhhH---HHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCC
Q 003886 592 DPLIVVLHGGPHSVSLSSYS---KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~---~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (789)
.|.||++||.+... ..|. .....|++.||.|+++|+|| +|.+..............+|+.+.++. +
T Consensus 30 ~~~ivllHG~~~~~--~~~~~~~~~~~~l~~~~~~vi~~D~~G---~G~S~~~~~~~~~~~~~~~~l~~~l~~------l 98 (282)
T TIGR03343 30 GEAVIMLHGGGPGA--GGWSNYYRNIGPFVDAGYRVILKDSPG---FNKSDAVVMDEQRGLVNARAVKGLMDA------L 98 (282)
T ss_pred CCeEEEECCCCCch--hhHHHHHHHHHHHHhCCCEEEEECCCC---CCCCCCCcCcccccchhHHHHHHHHHH------c
Confidence 46799999966542 2332 33456778899999999998 555432211111111123444444443 4
Q ss_pred CCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCC------------CCCcch-hhhhccCccccc--
Q 003886 669 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT------------DIPDWC-YVESYGSKGKDS-- 733 (789)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~------------~~~~~~-~~~~~~~~~~~~-- 733 (789)
+.++++++|||+||++++.++.++|++++++|+.+|........... ..+... +...+.......
T Consensus 99 ~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (282)
T TIGR03343 99 DIEKAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSLFAPMPMEGIKLLFKLYAEPSYETLKQMLNVFLFDQSL 178 (282)
T ss_pred CCCCeeEEEECchHHHHHHHHHhChHhhceEEEECCCCCCccccccCchHHHHHHHHHhcCCCHHHHHHHHhhCccCccc
Confidence 66899999999999999999999999999999988742110000000 000000 000000000000
Q ss_pred ------------cCCCCChhhHHHHH---------hcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCCC
Q 003886 734 ------------FTESPSVEDLTRFH---------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPFS 788 (789)
Q Consensus 734 ------------~~~~~~~~~~~~~~---------~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~~ 788 (789)
.... ......+. ..+....+.++++|+|+++|++|..||++.+.++++.+++.
T Consensus 179 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlli~G~~D~~v~~~~~~~~~~~~~~~ 252 (282)
T TIGR03343 179 ITEELLQGRWENIQRQ--PEHLKNFLISSQKAPLSTWDVTARLGEIKAKTLVTWGRDDRFVPLDHGLKLLWNMPDA 252 (282)
T ss_pred CcHHHHHhHHHHhhcC--HHHHHHHHHhccccccccchHHHHHhhCCCCEEEEEccCCCcCCchhHHHHHHhCCCC
Confidence 0000 00111111 01112246789999999999999999999999999988764
No 61
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.52 E-value=2.8e-13 Score=136.15 Aligned_cols=168 Identities=19% Similarity=0.177 Sum_probs=127.4
Q ss_pred CeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhh----ccCC----
Q 003886 573 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEAL----QSLP---- 644 (789)
Q Consensus 573 g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~----~~~~---- 644 (789)
+.++.+++..|. .....|.||++|+..+- ........+.|+.+||.|++||+-+..|...... ....
T Consensus 11 ~~~~~~~~a~P~---~~~~~P~VIv~hei~Gl--~~~i~~~a~rlA~~Gy~v~~Pdl~~~~~~~~~~~~~~~~~~~~~~~ 85 (236)
T COG0412 11 DGELPAYLARPA---GAGGFPGVIVLHEIFGL--NPHIRDVARRLAKAGYVVLAPDLYGRQGDPTDIEDEPAELETGLVE 85 (236)
T ss_pred CceEeEEEecCC---cCCCCCEEEEEecccCC--chHHHHHHHHHHhCCcEEEechhhccCCCCCcccccHHHHhhhhhc
Confidence 378999999997 34445999999996553 4466677889999999999999865333222211 0000
Q ss_pred CCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhh
Q 003886 645 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 724 (789)
Q Consensus 645 ~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~ 724 (789)
.........|+.++++||..++.++.++|+++|+|+||.+++.++.+.| .++++|+..|..-.
T Consensus 86 ~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v~fyg~~~~---------------- 148 (236)
T COG0412 86 RVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAVAFYGGLIA---------------- 148 (236)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC-CccEEEEecCCCCC----------------
Confidence 0111344789999999999998899999999999999999999999766 79999988774310
Q ss_pred hccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 725 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
+......++++|+|+++|+.|..+|...-..+.+++..
T Consensus 149 -------------------------~~~~~~~~~~~pvl~~~~~~D~~~p~~~~~~~~~~~~~ 186 (236)
T COG0412 149 -------------------------DDTADAPKIKVPVLLHLAGEDPYIPAADVDALAAALED 186 (236)
T ss_pred -------------------------CcccccccccCcEEEEecccCCCCChhHHHHHHHHHHh
Confidence 00112668999999999999999999988888887754
No 62
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.51 E-value=2.9e-13 Score=139.56 Aligned_cols=186 Identities=15% Similarity=0.266 Sum_probs=111.9
Q ss_pred CCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCC
Q 003886 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (789)
.+.|+||++||.+.+ ...|......|. +||.|+++|+|| +|.+.... . ....++|..+.+..+++. ++
T Consensus 11 ~~~~~iv~lhG~~~~--~~~~~~~~~~l~-~~~~vi~~D~~G---~G~S~~~~-~---~~~~~~~~~~~~~~~i~~--~~ 78 (257)
T TIGR03611 11 ADAPVVVLSSGLGGS--GSYWAPQLDVLT-QRFHVVTYDHRG---TGRSPGEL-P---PGYSIAHMADDVLQLLDA--LN 78 (257)
T ss_pred CCCCEEEEEcCCCcc--hhHHHHHHHHHH-hccEEEEEcCCC---CCCCCCCC-c---ccCCHHHHHHHHHHHHHH--hC
Confidence 456899999997664 445655555554 579999999998 44433211 1 122355555555555544 35
Q ss_pred CccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhh-----------cCCCCCcchhh-h--hccCccc----
Q 003886 670 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV-----------GTTDIPDWCYV-E--SYGSKGK---- 731 (789)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~-----------~~~~~~~~~~~-~--~~~~~~~---- 731 (789)
..++.++|||+||++++.++.++|++++++|+.++........ .......+... . .+....+
T Consensus 79 ~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (257)
T TIGR03611 79 IERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRCFDVRIALLQHAGPEAYVHAQALFLYPADWISENA 158 (257)
T ss_pred CCcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCCCChhHHHHHHHHHHHHhccCcchhhhhhhhhhccccHhhccc
Confidence 6789999999999999999999999999999988754321100 00000000000 0 0000000
Q ss_pred --------cccCCC-CCh---hhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 732 --------DSFTES-PSV---EDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 732 --------~~~~~~-~~~---~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
...... ... .....+...+....++++++|+|+++|++|..+|++++.++++.+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~ 226 (257)
T TIGR03611 159 ARLAADEAHALAHFPGKANVLRRINALEAFDVSARLDRIQHPVLLIANRDDMLVPYTQSLRLAAALPN 226 (257)
T ss_pred hhhhhhhhhcccccCccHHHHHHHHHHHcCCcHHHhcccCccEEEEecCcCcccCHHHHHHHHHhcCC
Confidence 000000 000 01111222333445778999999999999999999999999988765
No 63
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=99.50 E-value=6.7e-13 Score=138.82 Aligned_cols=200 Identities=13% Similarity=0.187 Sum_probs=119.1
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcc
Q 003886 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~ 650 (789)
-+|.+++.+.... +...|.||++||.+.+ ...|......|.+ +|.|+++|+|| +|.+.... ...
T Consensus 9 ~~~~~~~~~~~~~-----~~~~~plvllHG~~~~--~~~w~~~~~~L~~-~~~vi~~Dl~G---~G~S~~~~-----~~~ 72 (276)
T TIGR02240 9 LDGQSIRTAVRPG-----KEGLTPLLIFNGIGAN--LELVFPFIEALDP-DLEVIAFDVPG---VGGSSTPR-----HPY 72 (276)
T ss_pred cCCcEEEEEEecC-----CCCCCcEEEEeCCCcc--hHHHHHHHHHhcc-CceEEEECCCC---CCCCCCCC-----CcC
Confidence 3666776655321 1233678999996554 4567666777754 69999999998 66654221 123
Q ss_pred cHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhh-------hhcCCCCCcc---
Q 003886 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-------MVGTTDIPDW--- 720 (789)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~-------~~~~~~~~~~--- 720 (789)
.++++.+.+..+++. ++.+++.|+|||+||++++.++.++|++++++|+.++...... .........+
T Consensus 73 ~~~~~~~~~~~~i~~--l~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (276)
T TIGR02240 73 RFPGLAKLAARMLDY--LDYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAAGAVMVPGKPKVLMMMASPRRYIQP 150 (276)
T ss_pred cHHHHHHHHHHHHHH--hCcCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCccccCCCchhHHHHhcCchhhhcc
Confidence 355555555555554 3457899999999999999999999999999999987653210 0000000000
Q ss_pred ----hh-hhhccCcc------ccc----cCCCCChhhHHHH---HhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHH
Q 003886 721 ----CY-VESYGSKG------KDS----FTESPSVEDLTRF---HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVI 782 (789)
Q Consensus 721 ----~~-~~~~~~~~------~~~----~~~~~~~~~~~~~---~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~ 782 (789)
.. ...+.... ... ............+ ........+.++++|+|+|+|++|..+|++++.++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~v~~~~~~~l~ 230 (276)
T TIGR02240 151 SHGIHIAPDIYGGAFRRDPELAMAHASKVRSGGKLGYYWQLFAGLGWTSIHWLHKIQQPTLVLAGDDDPIIPLINMRLLA 230 (276)
T ss_pred ccccchhhhhccceeeccchhhhhhhhhcccCCCchHHHHHHHHcCCchhhHhhcCCCCEEEEEeCCCCcCCHHHHHHHH
Confidence 00 00000000 000 0000000000000 111222446889999999999999999999999999
Q ss_pred HHCCCC
Q 003886 783 YHIPFS 788 (789)
Q Consensus 783 ~~l~~~ 788 (789)
+.+++.
T Consensus 231 ~~~~~~ 236 (276)
T TIGR02240 231 WRIPNA 236 (276)
T ss_pred HhCCCC
Confidence 888753
No 64
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=99.50 E-value=6.8e-13 Score=154.72 Aligned_cols=170 Identities=13% Similarity=0.173 Sum_probs=118.6
Q ss_pred HHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcC--CCC------------CccEEEEEc
Q 003886 613 SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG--LAN------------PSKVTVVGG 678 (789)
Q Consensus 613 ~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~--~~d------------~~rv~l~G~ 678 (789)
..++|+.+||+|+.+|.||..+.+..+ ...+..+.+|..++|+|+..+. +.| ..||+++|.
T Consensus 271 ~~~~~~~rGYaVV~~D~RGtg~SeG~~-----~~~~~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~ 345 (767)
T PRK05371 271 LNDYFLPRGFAVVYVSGIGTRGSDGCP-----TTGDYQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTGK 345 (767)
T ss_pred HHHHHHhCCeEEEEEcCCCCCCCCCcC-----ccCCHHHHHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEEE
Confidence 457899999999999999976644332 2344667899999999998532 123 579999999
Q ss_pred CccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCC----cch------hhh-hccC-----c---ccccc-----
Q 003886 679 SHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIP----DWC------YVE-SYGS-----K---GKDSF----- 734 (789)
Q Consensus 679 S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~----~~~------~~~-~~~~-----~---~~~~~----- 734 (789)
||||++++.+|+..|+.++|+|..+++.++..++...... .|. ... .+.. . ..+.+
T Consensus 346 SY~G~~~~~aAa~~pp~LkAIVp~a~is~~yd~yr~~G~~~~~~g~~ged~d~l~~~~~~r~~~~~~~~~~~~~~~~~~~ 425 (767)
T PRK05371 346 SYLGTLPNAVATTGVEGLETIIPEAAISSWYDYYRENGLVRAPGGYQGEDLDVLAELTYSRNLLAGDYLRHNEACEKLLA 425 (767)
T ss_pred cHHHHHHHHHHhhCCCcceEEEeeCCCCcHHHHhhcCCceeccCCcCCcchhhHHHHhhhcccCcchhhcchHHHHHHHh
Confidence 9999999999998888999999999999876554221110 010 000 0000 0 00000
Q ss_pred -----CCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 735 -----TESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 735 -----~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.........+.|...+++.++++|++|+|++||.+|.+|++.++.++|++|++
T Consensus 426 ~~~~~~~~~~~~y~~fW~~rn~~~~~~kIkvPvLlIhGw~D~~V~~~~s~~ly~aL~~ 483 (767)
T PRK05371 426 ELTAAQDRKTGDYNDFWDDRNYLKDADKIKASVLVVHGLNDWNVKPKQVYQWWDALPE 483 (767)
T ss_pred hhhhhhhhcCCCccHHHHhCCHhhHhhCCCCCEEEEeeCCCCCCChHHHHHHHHHHHh
Confidence 00000011234556778888999999999999999999999999999999864
No 65
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=99.50 E-value=3.7e-13 Score=125.84 Aligned_cols=131 Identities=21% Similarity=0.407 Sum_probs=100.5
Q ss_pred EEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccE
Q 003886 594 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKV 673 (789)
Q Consensus 594 ~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv 673 (789)
+||++||+..+ ...|....+.|+++||.|+.+|+++.+. .. ...++.++++++.+.. .|.++|
T Consensus 1 ~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~~~~~~~~---~~-----------~~~~~~~~~~~~~~~~-~~~~~i 63 (145)
T PF12695_consen 1 VVVLLHGWGGS--RRDYQPLAEALAEQGYAVVAFDYPGHGD---SD-----------GADAVERVLADIRAGY-PDPDRI 63 (145)
T ss_dssp EEEEECTTTTT--THHHHHHHHHHHHTTEEEEEESCTTSTT---SH-----------HSHHHHHHHHHHHHHH-CTCCEE
T ss_pred CEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEEecCCCCc---cc-----------hhHHHHHHHHHHHhhc-CCCCcE
Confidence 58999997664 5567788889999999999999987332 21 1225555555553322 288999
Q ss_pred EEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcCccc
Q 003886 674 TVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPIS 753 (789)
Q Consensus 674 ~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~ 753 (789)
+++|||+||.+++.++.+. .+++++|+.+|..+ ..
T Consensus 64 ~l~G~S~Gg~~a~~~~~~~-~~v~~~v~~~~~~~--------------------------------------------~~ 98 (145)
T PF12695_consen 64 ILIGHSMGGAIAANLAARN-PRVKAVVLLSPYPD--------------------------------------------SE 98 (145)
T ss_dssp EEEEETHHHHHHHHHHHHS-TTESEEEEESESSG--------------------------------------------CH
T ss_pred EEEEEccCcHHHHHHhhhc-cceeEEEEecCccc--------------------------------------------hh
Confidence 9999999999999999987 78999999988311 01
Q ss_pred cCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 754 HISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 754 ~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
.+.+.+.|+|+++|++|..+|+++..+++++++
T Consensus 99 ~~~~~~~pv~~i~g~~D~~~~~~~~~~~~~~~~ 131 (145)
T PF12695_consen 99 DLAKIRIPVLFIHGENDPLVPPEQVRRLYEALP 131 (145)
T ss_dssp HHTTTTSEEEEEEETT-SSSHHHHHHHHHHHHC
T ss_pred hhhccCCcEEEEEECCCCcCCHHHHHHHHHHcC
Confidence 123456699999999999999999999999886
No 66
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=99.49 E-value=1.1e-13 Score=139.07 Aligned_cols=165 Identities=21% Similarity=0.232 Sum_probs=111.6
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCC-CCchhhc---cCC---CCCC
Q 003886 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLG-FGEEALQ---SLP---GKVG 648 (789)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G-~G~~~~~---~~~---~~~~ 648 (789)
+.+++..|++ .++.|.||++|+..+- ..........|+++||.|++||+-+..+ .-....+ ... ....
T Consensus 1 ~~ay~~~P~~---~~~~~~Vvv~~d~~G~--~~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (218)
T PF01738_consen 1 IDAYVARPEG---GGPRPAVVVIHDIFGL--NPNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRELFAPRP 75 (218)
T ss_dssp EEEEEEEETT---SSSEEEEEEE-BTTBS---HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHHCHHHSH
T ss_pred CeEEEEeCCC---CCCCCEEEEEcCCCCC--chHHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHHHHhhhH
Confidence 4688999973 3689999999996553 3445567789999999999999864333 0011000 000 0011
Q ss_pred cccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccC
Q 003886 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 728 (789)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~ 728 (789)
..-.+|+.+++++|.+++.++.+||+++|+|+||.+++.++.+. +.++++|+..|...
T Consensus 76 ~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg~~~--------------------- 133 (218)
T PF01738_consen 76 EQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYGGSP--------------------- 133 (218)
T ss_dssp HHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-SSS---------------------
T ss_pred HHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcCCCC---------------------
Confidence 12357888999999999888999999999999999999998876 68999999877100
Q ss_pred ccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 729 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
. . .+.....++++|+|+++|++|+.+|.+...++.++|+
T Consensus 134 ----------~-~--------~~~~~~~~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~ 172 (218)
T PF01738_consen 134 ----------P-P--------PPLEDAPKIKAPVLILFGENDPFFPPEEVEALEEALK 172 (218)
T ss_dssp ----------G-G--------GHHHHGGG--S-EEEEEETT-TTS-HHHHHHHHHHHH
T ss_pred ----------C-C--------cchhhhcccCCCEeecCccCCCCCChHHHHHHHHHHH
Confidence 0 0 0112356788999999999999999999888888874
No 67
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.48 E-value=1.8e-12 Score=130.09 Aligned_cols=196 Identities=19% Similarity=0.180 Sum_probs=122.5
Q ss_pred CCC-eeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCc
Q 003886 571 GAQ-KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649 (789)
Q Consensus 571 ~~g-~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~ 649 (789)
.|| .....|...| ...+.|+||.+||-.++.....-......+.++||.|+++|.||++|.-.. .+.-+..
T Consensus 57 pdg~~~~ldw~~~p----~~~~~P~vVl~HGL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~----~p~~yh~ 128 (345)
T COG0429 57 PDGGFIDLDWSEDP----RAAKKPLVVLFHGLEGSSNSPYARGLMRALSRRGWLVVVFHFRGCSGEANT----SPRLYHS 128 (345)
T ss_pred CCCCEEEEeeccCc----cccCCceEEEEeccCCCCcCHHHHHHHHHHHhcCCeEEEEecccccCCccc----Ccceecc
Confidence 344 3444555445 456679999999977765555334466788999999999999997654321 1333334
Q ss_pred ccHHHHHHHHHHHHHcCCCCCccEEEEEcCccH-HHHHHHHHhCCC-ceeEEEEeCCccchhhhhcCCCCCcc-h-hhhh
Q 003886 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGG-FLTTHLIGQAPD-KFVAAAARNPLCNLALMVGTTDIPDW-C-YVES 725 (789)
Q Consensus 650 ~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG-~~a~~~~~~~p~-~~~a~v~~~pv~~~~~~~~~~~~~~~-~-~~~~ 725 (789)
.+.+|+..+++++.++. ...++..+|.|+|| +++.+++-+..+ ...|+++.+...|+..-...-+...+ . |...
T Consensus 129 G~t~D~~~~l~~l~~~~--~~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~Dl~~~~~~l~~~~s~~ly~r~ 206 (345)
T COG0429 129 GETEDIRFFLDWLKARF--PPRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPFDLEACAYRLDSGFSLRLYSRY 206 (345)
T ss_pred cchhHHHHHHHHHHHhC--CCCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHHHHHHHHHHhcCchhhhhhHHH
Confidence 45689999999999873 46789999999999 556665543222 34555555444444211111111111 0 0000
Q ss_pred ------------------------------------ccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCC
Q 003886 726 ------------------------------------YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQ 769 (789)
Q Consensus 726 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~ 769 (789)
|-........+.+ +..+.|+..|.+..+.+|.+|+||||..+
T Consensus 207 l~~~L~~~~~~kl~~l~~~~p~~~~~~ik~~~ti~eFD~~~Tap~~Gf~--da~dYYr~aSs~~~L~~Ir~PtLii~A~D 284 (345)
T COG0429 207 LLRNLKRNAARKLKELEPSLPGTVLAAIKRCRTIREFDDLLTAPLHGFA--DAEDYYRQASSLPLLPKIRKPTLIINAKD 284 (345)
T ss_pred HHHHHHHHHHHHHHhcCcccCcHHHHHHHhhchHHhccceeeecccCCC--cHHHHHHhccccccccccccceEEEecCC
Confidence 0000001112222 44567888899999999999999999999
Q ss_pred CCCCChHHH
Q 003886 770 DLRVPVSNG 778 (789)
Q Consensus 770 D~~vp~~~~ 778 (789)
|++++++..
T Consensus 285 DP~~~~~~i 293 (345)
T COG0429 285 DPFMPPEVI 293 (345)
T ss_pred CCCCChhhC
Confidence 999988543
No 68
>PLN02965 Probable pheophorbidase
Probab=99.48 E-value=1.5e-12 Score=134.41 Aligned_cols=101 Identities=23% Similarity=0.271 Sum_probs=75.7
Q ss_pred EEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCC-cc
Q 003886 594 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP-SK 672 (789)
Q Consensus 594 ~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~-~r 672 (789)
.||++||.+.+ ...|......|++.||.|+++|+|| +|.+.... . ....++++.+.+..+++. ++. ++
T Consensus 5 ~vvllHG~~~~--~~~w~~~~~~L~~~~~~via~Dl~G---~G~S~~~~--~--~~~~~~~~a~dl~~~l~~--l~~~~~ 73 (255)
T PLN02965 5 HFVFVHGASHG--AWCWYKLATLLDAAGFKSTCVDLTG---AGISLTDS--N--TVSSSDQYNRPLFALLSD--LPPDHK 73 (255)
T ss_pred EEEEECCCCCC--cCcHHHHHHHHhhCCceEEEecCCc---CCCCCCCc--c--ccCCHHHHHHHHHHHHHh--cCCCCC
Confidence 49999997764 4567777888989999999999998 55543211 1 123355555555555554 333 58
Q ss_pred EEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 673 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 673 v~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
+.++||||||.+++.++.++|++++++|+.++.
T Consensus 74 ~~lvGhSmGG~ia~~~a~~~p~~v~~lvl~~~~ 106 (255)
T PLN02965 74 VILVGHSIGGGSVTEALCKFTDKISMAIYVAAA 106 (255)
T ss_pred EEEEecCcchHHHHHHHHhCchheeEEEEEccc
Confidence 999999999999999999999999999998865
No 69
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.47 E-value=4.8e-13 Score=137.01 Aligned_cols=183 Identities=16% Similarity=0.237 Sum_probs=110.8
Q ss_pred CCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCC
Q 003886 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (789)
..|+||++||.+.+ ...|......|. .||.|+++|+|| +|.+... ......++..+.+..+++. ++.
T Consensus 12 ~~~~li~~hg~~~~--~~~~~~~~~~l~-~~~~v~~~d~~G---~G~s~~~-----~~~~~~~~~~~~~~~~i~~--~~~ 78 (251)
T TIGR02427 12 GAPVLVFINSLGTD--LRMWDPVLPALT-PDFRVLRYDKRG---HGLSDAP-----EGPYSIEDLADDVLALLDH--LGI 78 (251)
T ss_pred CCCeEEEEcCcccc--hhhHHHHHHHhh-cccEEEEecCCC---CCCCCCC-----CCCCCHHHHHHHHHHHHHH--hCC
Confidence 56899999996553 445655666664 689999999998 4544211 1123466666666666665 356
Q ss_pred ccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhh---hh---cCCCCCcch-hhh-hccCccccccCCCCChhh
Q 003886 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL---MV---GTTDIPDWC-YVE-SYGSKGKDSFTESPSVED 742 (789)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~---~~---~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~ 742 (789)
+++.++|||+||++++.++.++|++++++|+.++...+.. .. ......... ... .........+.. .....
T Consensus 79 ~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 157 (251)
T TIGR02427 79 ERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAKIGTPESWNARIAAVRAEGLAALADAVLERWFTPGFRE-AHPAR 157 (251)
T ss_pred CceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCccccCchhhHHHHHhhhhhccHHHHHHHHHHHHccccccc-CChHH
Confidence 7899999999999999999999999999988876432110 00 000000000 000 000000000000 00000
Q ss_pred -------------------HHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 743 -------------------LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 743 -------------------~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
...+...+....+.++++|+|+++|++|..+|.+...++.+.+++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pvlii~g~~D~~~~~~~~~~~~~~~~~ 221 (251)
T TIGR02427 158 LDLYRNMLVRQPPDGYAGCCAAIRDADFRDRLGAIAVPTLCIAGDQDGSTPPELVREIADLVPG 221 (251)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcccHHHHhhhcCCCeEEEEeccCCcCChHHHHHHHHhCCC
Confidence 001111222334678899999999999999999999999888764
No 70
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=99.46 E-value=1.5e-12 Score=137.53 Aligned_cols=107 Identities=14% Similarity=0.142 Sum_probs=79.4
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCC-C-CCcccHHHHHHHHHHHHHcCCCC
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG-K-VGSQDVNDVLTAIDHVIDMGLAN 669 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~-~-~~~~~~~D~~~~i~~l~~~~~~d 669 (789)
.|.||++||.+.+ ...|......|+.. |.|+++|+|| +|.+....... . .....++++.+.+..+++. ..
T Consensus 29 ~~~vlllHG~~~~--~~~w~~~~~~L~~~-~~vi~~DlpG---~G~S~~~~~~~~~~~~~~~~~~~a~~l~~~l~~--l~ 100 (294)
T PLN02824 29 GPALVLVHGFGGN--ADHWRKNTPVLAKS-HRVYAIDLLG---YGYSDKPNPRSAPPNSFYTFETWGEQLNDFCSD--VV 100 (294)
T ss_pred CCeEEEECCCCCC--hhHHHHHHHHHHhC-CeEEEEcCCC---CCCCCCCccccccccccCCHHHHHHHHHHHHHH--hc
Confidence 3789999997764 56788788888876 6999999998 55543221100 0 1134566766666666654 23
Q ss_pred CccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 670 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
.+++.|+|||+||++++.++.++|++++++|+.++..
T Consensus 101 ~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~ 137 (294)
T PLN02824 101 GDPAFVICNSVGGVVGLQAAVDAPELVRGVMLINISL 137 (294)
T ss_pred CCCeEEEEeCHHHHHHHHHHHhChhheeEEEEECCCc
Confidence 4789999999999999999999999999999998753
No 71
>COG4099 Predicted peptidase [General function prediction only]
Probab=99.45 E-value=3.2e-13 Score=131.35 Aligned_cols=164 Identities=19% Similarity=0.162 Sum_probs=114.6
Q ss_pred CCCeeEEEEEEecCCCCCCCCC-cEEEEEcCCCCCCCchhhHHHHH-------HHHHCCcEEEEEcCCCCCCCCchhhcc
Q 003886 571 GAQKPFEAIFVSSSHKKDCSCD-PLIVVLHGGPHSVSLSSYSKSLA-------FLSSVGYSLLIVNYRGSLGFGEEALQS 642 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~-P~vv~~HGg~~~~~~~~~~~~~~-------~la~~Gy~V~~~d~rGs~G~G~~~~~~ 642 (789)
.-|.++...+|.|+++.++++| |+|+|+||++...... .....+ ..-+.++.|++|.|- +=+-...
T Consensus 169 ~tgneLkYrly~Pkdy~pdkky~PLvlfLHgagq~g~dn-~~~l~sg~gaiawa~pedqcfVlAPQy~--~if~d~e--- 242 (387)
T COG4099 169 STGNELKYRLYTPKDYAPDKKYYPLVLFLHGAGQGGSDN-DKVLSSGIGAIAWAGPEDQCFVLAPQYN--PIFADSE--- 242 (387)
T ss_pred ccCceeeEEEecccccCCCCccccEEEEEecCCCCCchh-hhhhhcCccceeeecccCceEEEccccc--ccccccc---
Confidence 3577899999999999999998 9999999977653322 211110 112345677887752 1111100
Q ss_pred CCCCCCcccHHHHHHHHH-HHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcch
Q 003886 643 LPGKVGSQDVNDVLTAID-HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWC 721 (789)
Q Consensus 643 ~~~~~~~~~~~D~~~~i~-~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~ 721 (789)
+............++ -+.++..||..||.++|.|+||+.+..++.++|+.|+|++.++|--+-
T Consensus 243 ---~~t~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d~------------- 306 (387)
T COG4099 243 ---EKTLLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGDR------------- 306 (387)
T ss_pred ---cccchhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCch-------------
Confidence 111112334455555 556677899999999999999999999999999999999998874320
Q ss_pred hhhhccCccccccCCCCChhhHHHHHhcCccccCCCC-CCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 722 YVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV-KTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i-~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
...++.+ ++|+.++|+.+|..+|.+++.-+|+.|+
T Consensus 307 ------------------------------v~lv~~lk~~piWvfhs~dDkv~Pv~nSrv~y~~lk 342 (387)
T COG4099 307 ------------------------------VYLVRTLKKAPIWVFHSSDDKVIPVSNSRVLYERLK 342 (387)
T ss_pred ------------------------------hhhhhhhccCceEEEEecCCCccccCcceeehHHHH
Confidence 0111222 4799999999999999999998888775
No 72
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=99.45 E-value=4.6e-12 Score=132.51 Aligned_cols=104 Identities=17% Similarity=0.198 Sum_probs=77.5
Q ss_pred CCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCC
Q 003886 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (789)
+.|+||++||.+++ ...|......|++ +|.|+++|+|| +|.+.... .....++++.+.+..+++. .+.
T Consensus 27 ~~~~vv~~hG~~~~--~~~~~~~~~~l~~-~~~vi~~D~~G---~G~S~~~~----~~~~~~~~~~~~l~~~i~~--~~~ 94 (278)
T TIGR03056 27 AGPLLLLLHGTGAS--THSWRDLMPPLAR-SFRVVAPDLPG---HGFTRAPF----RFRFTLPSMAEDLSALCAA--EGL 94 (278)
T ss_pred CCCeEEEEcCCCCC--HHHHHHHHHHHhh-CcEEEeecCCC---CCCCCCcc----ccCCCHHHHHHHHHHHHHH--cCC
Confidence 35889999997654 5567667777755 69999999998 55543211 1123466666666666665 345
Q ss_pred ccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
++++|+|||+||.+++.++.++|++++++|+.++..
T Consensus 95 ~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~ 130 (278)
T TIGR03056 95 SPDGVIGHSAGAAIALRLALDGPVTPRMVVGINAAL 130 (278)
T ss_pred CCceEEEECccHHHHHHHHHhCCcccceEEEEcCcc
Confidence 678999999999999999999999999999887754
No 73
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=99.44 E-value=4.1e-12 Score=139.73 Aligned_cols=123 Identities=16% Similarity=0.213 Sum_probs=85.6
Q ss_pred ecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHH-HHHHHH---HCCcEEEEEcCCCCCCCCchhhccCC
Q 003886 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-SLAFLS---SVGYSLLIVNYRGSLGFGEEALQSLP 644 (789)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~-~~~~la---~~Gy~V~~~d~rGs~G~G~~~~~~~~ 644 (789)
.+..|.+++.....|.+ +...|.||++||.+.+ ...|.. .+..|+ +.+|.|+++|+|| +|.+.... .
T Consensus 181 ~~~~~~~l~~~~~gp~~---~~~k~~VVLlHG~~~s--~~~W~~~~~~~L~~~~~~~yrVia~Dl~G---~G~S~~p~-~ 251 (481)
T PLN03087 181 LSSSNESLFVHVQQPKD---NKAKEDVLFIHGFISS--SAFWTETLFPNFSDAAKSTYRLFAVDLLG---FGRSPKPA-D 251 (481)
T ss_pred EeeCCeEEEEEEecCCC---CCCCCeEEEECCCCcc--HHHHHHHHHHHHHHHhhCCCEEEEECCCC---CCCCcCCC-C
Confidence 34455778877777752 2345789999997764 345543 224444 4799999999998 56553211 1
Q ss_pred CCCCcccHHHHHHHH-HHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 645 GKVGSQDVNDVLTAI-DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 645 ~~~~~~~~~D~~~~i-~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
....+++..+.+ ..+++. .+.+++.++|||+||++++.++.++|++++++|+.+|.
T Consensus 252 ---~~ytl~~~a~~l~~~ll~~--lg~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~ 308 (481)
T PLN03087 252 ---SLYTLREHLEMIERSVLER--YKVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPP 308 (481)
T ss_pred ---CcCCHHHHHHHHHHHHHHH--cCCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCC
Confidence 123455665555 345554 35678999999999999999999999999999999864
No 74
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.44 E-value=2.1e-13 Score=137.24 Aligned_cols=182 Identities=20% Similarity=0.301 Sum_probs=113.7
Q ss_pred EEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEE
Q 003886 595 IVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVT 674 (789)
Q Consensus 595 vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~ 674 (789)
||++||.+.+ ...|......| ++||.|+++|+|| +|.+.... ......+++..+.+..+++. +..+++.
T Consensus 1 vv~~hG~~~~--~~~~~~~~~~l-~~~~~v~~~d~~G---~G~s~~~~---~~~~~~~~~~~~~l~~~l~~--~~~~~~~ 69 (228)
T PF12697_consen 1 VVFLHGFGGS--SESWDPLAEAL-ARGYRVIAFDLPG---HGRSDPPP---DYSPYSIEDYAEDLAELLDA--LGIKKVI 69 (228)
T ss_dssp EEEE-STTTT--GGGGHHHHHHH-HTTSEEEEEECTT---STTSSSHS---SGSGGSHHHHHHHHHHHHHH--TTTSSEE
T ss_pred eEEECCCCCC--HHHHHHHHHHH-hCCCEEEEEecCC---cccccccc---ccCCcchhhhhhhhhhcccc--ccccccc
Confidence 7899997775 46777788888 5899999999998 55443221 12234466666666666665 3447899
Q ss_pred EEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhc----CCCCC---cch--hhhhccCccccccCCCCCh-----
Q 003886 675 VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG----TTDIP---DWC--YVESYGSKGKDSFTESPSV----- 740 (789)
Q Consensus 675 l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~----~~~~~---~~~--~~~~~~~~~~~~~~~~~~~----- 740 (789)
++|||+||.+++.++.++|++++++|+.+|......... ..-.. .+. ....+..............
T Consensus 70 lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (228)
T PF12697_consen 70 LVGHSMGGMIALRLAARYPDRVKGLVLLSPPPPLPDSPSRSFGPSFIRRLLAWRSRSLRRLASRFFYRWFDGDEPEDLIR 149 (228)
T ss_dssp EEEETHHHHHHHHHHHHSGGGEEEEEEESESSSHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred ccccccccccccccccccccccccceeecccccccccccccccchhhhhhhhcccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999875432110 00000 000 0000000000000000000
Q ss_pred ---hhH-HHH----HhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 741 ---EDL-TRF----HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 741 ---~~~-~~~----~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
... ..+ ...+....+.++++|+++++|++|..++.+...++.+.+++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~D~~~~~~~~~~~~~~~~~ 204 (228)
T PF12697_consen 150 SSRRALAEYLRSNLWQADLSEALPRIKVPVLVIHGEDDPIVPPESAEELADKLPN 204 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGSSSEEEEEEETTSSSSHHHHHHHHHHHSTT
T ss_pred ccccccccccccccccccccccccccCCCeEEeecCCCCCCCHHHHHHHHHHCCC
Confidence 000 001 12233345778899999999999999999999999887764
No 75
>PRK10673 acyl-CoA esterase; Provisional
Probab=99.43 E-value=3.9e-12 Score=131.35 Aligned_cols=187 Identities=17% Similarity=0.168 Sum_probs=108.0
Q ss_pred CCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCC
Q 003886 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (789)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (789)
.....|.||++||.+++ ...|......|+ .+|.|+++|+|| +|.+... . ..++++..+-+..+++.
T Consensus 12 ~~~~~~~iv~lhG~~~~--~~~~~~~~~~l~-~~~~vi~~D~~G---~G~s~~~---~---~~~~~~~~~d~~~~l~~-- 77 (255)
T PRK10673 12 NPHNNSPIVLVHGLFGS--LDNLGVLARDLV-NDHDIIQVDMRN---HGLSPRD---P---VMNYPAMAQDLLDTLDA-- 77 (255)
T ss_pred CCCCCCCEEEECCCCCc--hhHHHHHHHHHh-hCCeEEEECCCC---CCCCCCC---C---CCCHHHHHHHHHHHHHH--
Confidence 34567889999997664 445666666665 469999999998 5544321 1 12344444433333333
Q ss_pred CCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc--cchh----hh---h-c--CCCCCcchh-hh----hccCcc
Q 003886 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL--CNLA----LM---V-G--TTDIPDWCY-VE----SYGSKG 730 (789)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv--~~~~----~~---~-~--~~~~~~~~~-~~----~~~~~~ 730 (789)
+..+++.|+|||+||.+++.++.++|++++++|+.++. .... .+ . . ......+.. .. .+....
T Consensus 78 l~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (255)
T PRK10673 78 LQIEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSEAGATTRQQAAAIMRQHLNEEG 157 (255)
T ss_pred cCCCceEEEEECHHHHHHHHHHHhCHhhcceEEEEecCCCCccchhhHHHHHHHHHhhhcccccHHHHHHHHHHhcCCHH
Confidence 34567999999999999999999999999999987532 1100 00 0 0 000000000 00 000000
Q ss_pred -----ccccCCCC----ChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCCC
Q 003886 731 -----KDSFTESP----SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPFS 788 (789)
Q Consensus 731 -----~~~~~~~~----~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~~ 788 (789)
...+.... .......+........+.++++|+|+++|++|..++.+.+..+.+.+++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~~~~ 224 (255)
T PRK10673 158 VIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWPHPALFIRGGNSPYVTEAYRDDLLAQFPQA 224 (255)
T ss_pred HHHHHHhcCCcceeEeeHHHHHHhHHHHhCCcccCCCCCCeEEEECCCCCCCCHHHHHHHHHhCCCc
Confidence 00000000 00001112222222346678999999999999999999999988877653
No 76
>PRK11460 putative hydrolase; Provisional
Probab=99.43 E-value=2.9e-12 Score=129.43 Aligned_cols=153 Identities=13% Similarity=0.166 Sum_probs=104.6
Q ss_pred CCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCC----CCCchhhccCCCCCCccc-------HHHHHH
Q 003886 589 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSL----GFGEEALQSLPGKVGSQD-------VNDVLT 657 (789)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~----G~G~~~~~~~~~~~~~~~-------~~D~~~ 657 (789)
....|+||++||.+.+ ...|......|+..++.+..+.++|.. +.|..|... .+...... .+.+.+
T Consensus 13 ~~~~~~vIlLHG~G~~--~~~~~~l~~~l~~~~~~~~~i~~~g~~~~~~~~g~~W~~~-~~~~~~~~~~~~~~~~~~l~~ 89 (232)
T PRK11460 13 KPAQQLLLLFHGVGDN--PVAMGEIGSWFAPAFPDALVVSVGGPEPSGNGAGRQWFSV-QGITEDNRQARVAAIMPTFIE 89 (232)
T ss_pred CCCCcEEEEEeCCCCC--hHHHHHHHHHHHHHCCCCEEECCCCCCCcCCCCCcccccC-CCCCccchHHHHHHHHHHHHH
Confidence 4567999999996664 556777778888877666666666521 123333211 11111111 233445
Q ss_pred HHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCC
Q 003886 658 AIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTES 737 (789)
Q Consensus 658 ~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (789)
.++++.++..++.+||+++|+|+||.+++.++.++|+.+.++|+.++... . .
T Consensus 90 ~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~-----------~-----------------~ 141 (232)
T PRK11460 90 TVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYA-----------S-----------------L 141 (232)
T ss_pred HHHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEeccccc-----------c-----------------c
Confidence 56666666668889999999999999999999888988888877665310 0 0
Q ss_pred CChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 738 PSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 738 ~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
+. ....++|+|++||++|.+||++.+.++++.|+.
T Consensus 142 ~~---------------~~~~~~pvli~hG~~D~vvp~~~~~~~~~~L~~ 176 (232)
T PRK11460 142 PE---------------TAPTATTIHLIHGGEDPVIDVAHAVAAQEALIS 176 (232)
T ss_pred cc---------------cccCCCcEEEEecCCCCccCHHHHHHHHHHHHH
Confidence 00 012368999999999999999999999998864
No 77
>PRK10162 acetyl esterase; Provisional
Probab=99.42 E-value=7.6e-12 Score=132.87 Aligned_cols=184 Identities=15% Similarity=0.116 Sum_probs=120.4
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCc-hhhHHHHHHHHH-CCcEEEEEcCCCCCCCCchhhccCCCCCCc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~-~~~~~~~~~la~-~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~ 649 (789)
+| .+.+.+|.|. ....|+||++|||++.... ..+...+..|+. .|+.|+++|||.++++ ...
T Consensus 66 ~g-~i~~~~y~P~----~~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlape~-----------~~p 129 (318)
T PRK10162 66 YG-QVETRLYYPQ----PDSQATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPEA-----------RFP 129 (318)
T ss_pred CC-ceEEEEECCC----CCCCCEEEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCCCC-----------CCC
Confidence 44 5888999985 2346999999998875433 345556777776 6999999999986542 112
Q ss_pred ccHHHHHHHHHHHHHc---CCCCCccEEEEEcCccHHHHHHHHHhC------CCceeEEEEeCCccchhhhhcCCCCCcc
Q 003886 650 QDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA------PDKFVAAAARNPLCNLALMVGTTDIPDW 720 (789)
Q Consensus 650 ~~~~D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~~~~~------p~~~~a~v~~~pv~~~~~~~~~~~~~~~ 720 (789)
..++|+.++++|+.++ -.+|.+||+|+|+|+||.+++.++.+. +.+++++|+.+|+.++... +.+
T Consensus 130 ~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~~~~~~------~s~ 203 (318)
T PRK10162 130 QAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLYGLRDS------VSR 203 (318)
T ss_pred CcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhheEEECCccCCCCC------hhH
Confidence 3478999999999764 237899999999999999999988642 3578999999998874211 000
Q ss_pred hhhhhccCccccccCCCCChhhHHHH----H-----hcCcccc--CCCC---CCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 721 CYVESYGSKGKDSFTESPSVEDLTRF----H-----SKSPISH--ISKV---KTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~sp~~~--~~~i---~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
. .++. .+... ..+..+.+ . ..+|... ...+ -.|++|++|+.|..+ .++..++++|+
T Consensus 204 ~---~~~~----~~~~l-~~~~~~~~~~~y~~~~~~~~~p~~~p~~~~l~~~lPp~~i~~g~~D~L~--de~~~~~~~L~ 273 (318)
T PRK10162 204 R---LLGG----VWDGL-TQQDLQMYEEAYLSNDADRESPYYCLFNNDLTRDVPPCFIAGAEFDPLL--DDSRLLYQTLA 273 (318)
T ss_pred H---HhCC----Ccccc-CHHHHHHHHHHhCCCccccCCcccCcchhhhhcCCCCeEEEecCCCcCc--ChHHHHHHHHH
Confidence 0 0000 00000 00111111 0 1122211 1223 369999999999986 48889998886
Q ss_pred C
Q 003886 787 F 787 (789)
Q Consensus 787 ~ 787 (789)
.
T Consensus 274 ~ 274 (318)
T PRK10162 274 A 274 (318)
T ss_pred H
Confidence 4
No 78
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.41 E-value=3.8e-12 Score=133.47 Aligned_cols=109 Identities=16% Similarity=0.192 Sum_probs=76.8
Q ss_pred CCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCC
Q 003886 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (789)
+.|.||++||++++. ...|......+.+.||.|+++|+|| +|.+..... ......++++.+.+..+++. .+.
T Consensus 24 ~~~~vl~~hG~~g~~-~~~~~~~~~~l~~~g~~vi~~d~~G---~G~s~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~ 95 (288)
T TIGR01250 24 EKIKLLLLHGGPGMS-HEYLENLRELLKEEGREVIMYDQLG---CGYSDQPDD--SDELWTIDYFVDELEEVREK--LGL 95 (288)
T ss_pred CCCeEEEEcCCCCcc-HHHHHHHHHHHHhcCCEEEEEcCCC---CCCCCCCCc--ccccccHHHHHHHHHHHHHH--cCC
Confidence 357889999987652 2233344445556699999999998 454432111 11013466666666666665 455
Q ss_pred ccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccc
Q 003886 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 707 (789)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~ 707 (789)
+++.++|||+||.+++.++..+|++++++|+.+++..
T Consensus 96 ~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 132 (288)
T TIGR01250 96 DKFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLDS 132 (288)
T ss_pred CcEEEEEeehHHHHHHHHHHhCccccceeeEeccccc
Confidence 6799999999999999999999999999999887543
No 79
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=99.41 E-value=6.4e-12 Score=134.31 Aligned_cols=131 Identities=18% Similarity=0.263 Sum_probs=85.9
Q ss_pred ecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCch--------------------hh----HHHHHHHHHCCcEE
Q 003886 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS--------------------SY----SKSLAFLSSVGYSL 624 (789)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~--------------------~~----~~~~~~la~~Gy~V 624 (789)
.+.||..|....+.|+ .+..+|+++||........ .| ...+..|+++||.|
T Consensus 3 ~~~~g~~l~~~~~~~~-----~~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~~G~~V 77 (332)
T TIGR01607 3 RNKDGLLLKTYSWIVK-----NAIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNKNGYSV 77 (332)
T ss_pred cCCCCCeEEEeeeecc-----CCeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHHCCCcE
Confidence 4568888988888774 3568999999955443211 11 24578999999999
Q ss_pred EEEcCCCCCCCCchhhc-cCCCCCC--cccHHHHHHHHHHHHHc------------------CCCCCccEEEEEcCccHH
Q 003886 625 LIVNYRGSLGFGEEALQ-SLPGKVG--SQDVNDVLTAIDHVIDM------------------GLANPSKVTVVGGSHGGF 683 (789)
Q Consensus 625 ~~~d~rGs~G~G~~~~~-~~~~~~~--~~~~~D~~~~i~~l~~~------------------~~~d~~rv~l~G~S~GG~ 683 (789)
+++|.|| +|.+... ...+... ..-++|+.+.++.+.+. ..-+..++.|+||||||.
T Consensus 78 ~~~D~rG---HG~S~~~~~~~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg~ 154 (332)
T TIGR01607 78 YGLDLQG---HGESDGLQNLRGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGGN 154 (332)
T ss_pred EEecccc---cCCCccccccccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCccH
Confidence 9999998 4433211 1111111 11246677777766541 011145799999999999
Q ss_pred HHHHHHHhCCC--------ceeEEEEeCCccc
Q 003886 684 LTTHLIGQAPD--------KFVAAAARNPLCN 707 (789)
Q Consensus 684 ~a~~~~~~~p~--------~~~a~v~~~pv~~ 707 (789)
+++.++..+++ .++++|+.+|...
T Consensus 155 i~~~~~~~~~~~~~~~~~~~i~g~i~~s~~~~ 186 (332)
T TIGR01607 155 IALRLLELLGKSNENNDKLNIKGCISLSGMIS 186 (332)
T ss_pred HHHHHHHHhccccccccccccceEEEeccceE
Confidence 99988765432 5889998888754
No 80
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.41 E-value=1.6e-10 Score=122.11 Aligned_cols=247 Identities=15% Similarity=0.100 Sum_probs=140.2
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~ 234 (789)
....+|+|||+.++.....+ ..++.++ .+++..+.+...... ..+.|+|||+.++.....
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~---~~v~~~d~~~~~~~~~~~~~~~~----------~~~~~~~~g~~l~~~~~~------ 93 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDS---DTIQVIDLATGEVIGTLPSGPDP----------ELFALHPNGKILYIANED------ 93 (300)
T ss_pred CCceEECCCCCEEEEEECCC---CeEEEEECCCCcEEEeccCCCCc----------cEEEECCCCCEEEEEcCC------
Confidence 45688999999876554322 1244333 344443333222222 468899999977654321
Q ss_pred CccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEE
Q 003886 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 314 (789)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~ 314 (789)
...|.+||+.+++.... .+.......+.|+|||+. ++
T Consensus 94 -------------------------------------~~~l~~~d~~~~~~~~~--~~~~~~~~~~~~~~dg~~----l~ 130 (300)
T TIGR03866 94 -------------------------------------DNLVTVIDIETRKVLAE--IPVGVEPEGMAVSPDGKI----VV 130 (300)
T ss_pred -------------------------------------CCeEEEEECCCCeEEeE--eeCCCCcceEEECCCCCE----EE
Confidence 24689999988754333 232334567899999997 77
Q ss_pred EEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCC
Q 003886 315 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSS 394 (789)
Q Consensus 315 f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~ 394 (789)
+.... ...++.+|. .+++...............|+|||++|++.+..+
T Consensus 131 ~~~~~--------------~~~~~~~d~-----------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~- 178 (300)
T TIGR03866 131 NTSET--------------TNMAHFIDT-----------------KTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIG- 178 (300)
T ss_pred EEecC--------------CCeEEEEeC-----------------CCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCC-
Confidence 65521 113555676 3333322111122345689999999887665332
Q ss_pred CCCCCccccceeEEeecCCCCCCC-cccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003886 395 VDSGAHSATDSLHRIDWPTNGNFS-SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (789)
Q Consensus 395 ~~~g~~~~~~~L~~~d~~~~~~~~-~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~ 473 (789)
..+++||+.+++... +.... + ...++ ......+.|+|||+.+++..... ..+..+
T Consensus 179 ---------~~v~i~d~~~~~~~~~~~~~~---------~--~~~~~--~~~~~~i~~s~dg~~~~~~~~~~--~~i~v~ 234 (300)
T TIGR03866 179 ---------GTVSVIDVATRKVIKKITFEI---------P--GVHPE--AVQPVGIKLTKDGKTAFVALGPA--NRVAVV 234 (300)
T ss_pred ---------CEEEEEEcCcceeeeeeeecc---------c--ccccc--cCCccceEECCCCCEEEEEcCCC--CeEEEE
Confidence 358999998754321 11000 0 00000 00123567899999876654333 347777
Q ss_pred ECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 474 NVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 474 dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
|+.++++..............|+++|+.|+....... .|.+.|+.+.
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~---~i~v~d~~~~ 281 (300)
T TIGR03866 235 DAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSN---DVSVIDVAAL 281 (300)
T ss_pred ECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCC---eEEEEECCCC
Confidence 8888887654332333345678999998765543222 3777776543
No 81
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.40 E-value=2.3e-11 Score=126.33 Aligned_cols=314 Identities=17% Similarity=0.188 Sum_probs=163.6
Q ss_pred ecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeE
Q 003886 102 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 181 (789)
Q Consensus 102 ~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 181 (789)
+.+.+||+++.|..+. ....+++++++ ..++++|||..+- .......+||+++.|+|+.+.. ++
T Consensus 41 ~~ft~dG~kllF~s~~------dg~~nly~lDL--~t~~i~QLTdg~g----~~~~g~~~s~~~~~~~Yv~~~~----~l 104 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDF------DGNRNLYLLDL--ATGEITQLTDGPG----DNTFGGFLSPDDRALYYVKNGR----SL 104 (386)
T ss_dssp --B-TTS-EEEEEE-T------TSS-EEEEEET--TT-EEEE---SS-----B-TTT-EE-TTSSEEEEEETTT----EE
T ss_pred CCcCCCCCEEEEEecc------CCCcceEEEEc--ccCEEEECccCCC----CCccceEEecCCCeEEEEECCC----eE
Confidence 3457999999997653 25678999887 4558899998651 1123467999999999987653 68
Q ss_pred EEEe-cCCceeEEEecCCCccccccCCCcccceee--cCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcce
Q 003886 182 FELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISW--NSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGD 258 (789)
Q Consensus 182 ~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~w--SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (789)
+.++ .+.+.+.+...+... .....| ..|+++++.+........+ ...|+.
T Consensus 105 ~~vdL~T~e~~~vy~~p~~~---------~g~gt~v~n~d~t~~~g~e~~~~d~~~---------------l~~~~~--- 157 (386)
T PF14583_consen 105 RRVDLDTLEERVVYEVPDDW---------KGYGTWVANSDCTKLVGIEISREDWKP---------------LTKWKG--- 157 (386)
T ss_dssp EEEETTT--EEEEEE--TTE---------EEEEEEEE-TTSSEEEEEEEEGGG--------------------SHHH---
T ss_pred EEEECCcCcEEEEEECCccc---------ccccceeeCCCccEEEEEEEeehhccC---------------ccccHH---
Confidence 8888 666666777766443 244566 4678888876543211000 000110
Q ss_pred eeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceE
Q 003886 259 WEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 338 (789)
Q Consensus 259 ~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~ 338 (789)
..+.+.......|+.+|+.+|+.+.+ .....-.+.+.+||..... |.|. .+..- ..-...||
T Consensus 158 ----f~e~~~a~p~~~i~~idl~tG~~~~v--~~~~~wlgH~~fsP~dp~l---i~fC-HEGpw--------~~Vd~RiW 219 (386)
T PF14583_consen 158 ----FREFYEARPHCRIFTIDLKTGERKVV--FEDTDWLGHVQFSPTDPTL---IMFC-HEGPW--------DLVDQRIW 219 (386)
T ss_dssp ----HHHHHHC---EEEEEEETTT--EEEE--EEESS-EEEEEEETTEEEE---EEEE-E-S-T--------TTSS-SEE
T ss_pred ----HHHHHhhCCCceEEEEECCCCceeEE--EecCccccCcccCCCCCCE---EEEe-ccCCc--------ceeceEEE
Confidence 02333344567899999999999888 5556667899999965541 5664 33321 11234799
Q ss_pred EEecccccchhhhhhhhcCCCCCCCeeecCCC--CCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCC
Q 003886 339 AVRVSLYKSEASELELKESSSEDLPVVNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (789)
Q Consensus 339 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~--~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~ 416 (789)
.++. +++..+.+... ...+...-|+|||+.|.|.+... | ....-|..+|+.+++.
T Consensus 220 ~i~~-----------------dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~----~--~~~~~i~~~d~~t~~~ 276 (386)
T PF14583_consen 220 TINT-----------------DGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTP----G--GQDFWIAGYDPDTGER 276 (386)
T ss_dssp EEET-----------------TS---EESS---TTEEEEEEEE-TTSS-EEEEEEET----T--T--EEEEEE-TTT--E
T ss_pred EEEc-----------------CCCcceeeecCCCCcccccccccCCCCEEEEEeecC----C--CCceEEEeeCCCCCCc
Confidence 9997 55655555433 23577889999999999987643 1 1234588888887654
Q ss_pred CCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEe-------------CCeEEEEEEECCCCcEEEe
Q 003886 417 FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-------------GSSQVIISVNVSSGELLRI 483 (789)
Q Consensus 417 ~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~-------------~~~~~l~~~dl~tg~~~~l 483 (789)
+.+... + ++ ..+--++||+.++=-+.+ .+..-||.+++.+++...|
T Consensus 277 ~~~~~~----------p--------~~---~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l 335 (386)
T PF14583_consen 277 RRLMEM----------P--------WC---SHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKL 335 (386)
T ss_dssp EEEEEE-------------------SE---EEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEE
T ss_pred eEEEeC----------C--------ce---eeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeee
Confidence 322111 0 00 012235677633211111 0123578889988887655
Q ss_pred cCCCC-----------CceeEEeeecCCEEEEEEeCCCCCCeEEEEeec
Q 003886 484 TPAES-----------NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521 (789)
Q Consensus 484 t~~~~-----------~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~ 521 (789)
..... ..-.+.|+|||++++|.+.- .-++.||.+++.
T Consensus 336 ~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~-~G~~~vY~v~i~ 383 (386)
T PF14583_consen 336 ARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDM-EGPPAVYLVEIP 383 (386)
T ss_dssp EE-------BTTBSSTT----EE-TTSSEEEEEE-T-TSS-EEEEEE--
T ss_pred eeccCcceeecCCCccCCCCCccCCCCCEEEEECCC-CCCccEEEEeCc
Confidence 43221 12346899999999887755 566889998864
No 82
>PRK11071 esterase YqiA; Provisional
Probab=99.40 E-value=8.1e-12 Score=121.87 Aligned_cols=156 Identities=13% Similarity=0.106 Sum_probs=98.0
Q ss_pred cEEEEEcCCCCCCCchhhHH--HHHHHHH--CCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCC
Q 003886 593 PLIVVLHGGPHSVSLSSYSK--SLAFLSS--VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (789)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~--~~~~la~--~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (789)
|.||++||.+.+ ...|.. ...+|.+ .+|.|+++|++| ++ ++..+.++.++++ .
T Consensus 2 p~illlHGf~ss--~~~~~~~~~~~~l~~~~~~~~v~~~dl~g---~~----------------~~~~~~l~~l~~~--~ 58 (190)
T PRK11071 2 STLLYLHGFNSS--PRSAKATLLKNWLAQHHPDIEMIVPQLPP---YP----------------ADAAELLESLVLE--H 58 (190)
T ss_pred CeEEEECCCCCC--cchHHHHHHHHHHHHhCCCCeEEeCCCCC---CH----------------HHHHHHHHHHHHH--c
Confidence 679999997665 334442 3355655 379999999987 32 2445555666654 3
Q ss_pred CCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhc-C-CCCCcchhhhhccCccccccCCCCChhhHHHH
Q 003886 669 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-T-TDIPDWCYVESYGSKGKDSFTESPSVEDLTRF 746 (789)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (789)
+.+++.++|+|+||++++.++.++|. + +|+.+|..+...... . ....... .. +.+. ......+..
T Consensus 59 ~~~~~~lvG~S~Gg~~a~~~a~~~~~--~-~vl~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~--~~~~~~~d~ 125 (190)
T PRK11071 59 GGDPLGLVGSSLGGYYATWLSQCFML--P-AVVVNPAVRPFELLTDYLGENENPY----TG----QQYV--LESRHIYDL 125 (190)
T ss_pred CCCCeEEEEECHHHHHHHHHHHHcCC--C-EEEECCCCCHHHHHHHhcCCccccc----CC----CcEE--EcHHHHHHH
Confidence 45689999999999999999999883 3 467777666321110 0 0000000 00 0000 011233333
Q ss_pred HhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 747 HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 747 ~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
....+.. +. ..+|++++||++|+.||++++.++++..+
T Consensus 126 ~~~~~~~-i~-~~~~v~iihg~~De~V~~~~a~~~~~~~~ 163 (190)
T PRK11071 126 KVMQIDP-LE-SPDLIWLLQQTGDEVLDYRQAVAYYAACR 163 (190)
T ss_pred HhcCCcc-CC-ChhhEEEEEeCCCCcCCHHHHHHHHHhcc
Confidence 3333322 33 67889999999999999999999998764
No 83
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=99.40 E-value=4.2e-12 Score=129.36 Aligned_cols=129 Identities=14% Similarity=0.126 Sum_probs=94.5
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC--chhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS--LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~--~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~ 649 (789)
....+.++++.|. ..++.|+||++||.+.... ...|......|+++||.|+.+|+|| +|.+........+ .
T Consensus 8 ~~g~~~~~~~~p~---~~~~~~~VlllHG~g~~~~~~~~~~~~la~~La~~Gy~Vl~~Dl~G---~G~S~g~~~~~~~-~ 80 (266)
T TIGR03101 8 PHGFRFCLYHPPV---AVGPRGVVIYLPPFAEEMNKSRRMVALQARAFAAGGFGVLQIDLYG---CGDSAGDFAAARW-D 80 (266)
T ss_pred CCCcEEEEEecCC---CCCCceEEEEECCCcccccchhHHHHHHHHHHHHCCCEEEEECCCC---CCCCCCccccCCH-H
Confidence 3445778888886 3345799999999654322 2344556778999999999999998 4443211111111 1
Q ss_pred ccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhh
Q 003886 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 710 (789)
Q Consensus 650 ~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~ 710 (789)
...+|+.++++++.+++ ..+|+|+|||+||.+++.++.++|++++++|+.+|+.....
T Consensus 81 ~~~~Dv~~ai~~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~g~~ 138 (266)
T TIGR03101 81 VWKEDVAAAYRWLIEQG---HPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVSGKQ 138 (266)
T ss_pred HHHHHHHHHHHHHHhcC---CCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccchHH
Confidence 23588888999987763 57899999999999999999999999999999999876543
No 84
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=99.40 E-value=9.2e-13 Score=135.89 Aligned_cols=139 Identities=19% Similarity=0.234 Sum_probs=83.8
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC------c--h----hh----HHHHHHHHHCCcEEEEEcCC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS------L--S----SY----SKSLAFLSSVGYSLLIVNYR 630 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~------~--~----~~----~~~~~~la~~Gy~V~~~d~r 630 (789)
.|....+..+.++++.|++. .++.|+||.+||-+.... . . .+ ......|+.+||+|+++|.+
T Consensus 92 ~f~~~p~~~vpaylLvPd~~--~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~GYVvla~D~~ 169 (390)
T PF12715_consen 92 EFNTTPGSRVPAYLLVPDGA--KGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKRGYVVLAPDAL 169 (390)
T ss_dssp EE--STTB-EEEEEEEETT----S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTTTSEEEEE--T
T ss_pred EEEccCCeeEEEEEEecCCC--CCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhCCCEEEEEccc
Confidence 45566788899999999853 678999999999332110 0 0 01 12356899999999999988
Q ss_pred CCCCCCchhhcc----------------CCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCC
Q 003886 631 GSLGFGEEALQS----------------LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 694 (789)
Q Consensus 631 Gs~G~G~~~~~~----------------~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~ 694 (789)
|-+..+.-.... +...+.....-|.+.+++||..++.+|++||+++|+|+||+.++++++.. +
T Consensus 170 g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~a~~LaALD-d 248 (390)
T PF12715_consen 170 GFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSMGGYRAWWLAALD-D 248 (390)
T ss_dssp TSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGGGHHHHHHHHHH--T
T ss_pred cccccccccccccccchhHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecccHHHHHHHHHcc-h
Confidence 733222110000 00111222245677899999999999999999999999999999999974 6
Q ss_pred ceeEEEEeCCccch
Q 003886 695 KFVAAAARNPLCNL 708 (789)
Q Consensus 695 ~~~a~v~~~pv~~~ 708 (789)
+++++|+.+-++.+
T Consensus 249 RIka~v~~~~l~~~ 262 (390)
T PF12715_consen 249 RIKATVANGYLCTT 262 (390)
T ss_dssp T--EEEEES-B--H
T ss_pred hhHhHhhhhhhhcc
Confidence 89999887766543
No 85
>PRK03592 haloalkane dehalogenase; Provisional
Probab=99.40 E-value=1.2e-11 Score=130.83 Aligned_cols=101 Identities=23% Similarity=0.304 Sum_probs=77.6
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCc
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (789)
.|.||++||.+.+ ...|...+..|++++ .|+++|+|| +|.+.... . .....+..+.+..+++. ++.+
T Consensus 27 g~~vvllHG~~~~--~~~w~~~~~~L~~~~-~via~D~~G---~G~S~~~~--~---~~~~~~~a~dl~~ll~~--l~~~ 93 (295)
T PRK03592 27 GDPIVFLHGNPTS--SYLWRNIIPHLAGLG-RCLAPDLIG---MGASDKPD--I---DYTFADHARYLDAWFDA--LGLD 93 (295)
T ss_pred CCEEEEECCCCCC--HHHHHHHHHHHhhCC-EEEEEcCCC---CCCCCCCC--C---CCCHHHHHHHHHHHHHH--hCCC
Confidence 3789999997764 567777788888885 999999998 66554321 1 13455555555555554 3457
Q ss_pred cEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 672 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 672 rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
++.++|||+||.+++.++.++|++++++|+.++.
T Consensus 94 ~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~ 127 (295)
T PRK03592 94 DVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAI 127 (295)
T ss_pred CeEEEEECHHHHHHHHHHHhChhheeEEEEECCC
Confidence 8999999999999999999999999999999874
No 86
>PLN00021 chlorophyllase
Probab=99.39 E-value=1.5e-11 Score=128.92 Aligned_cols=118 Identities=23% Similarity=0.303 Sum_probs=91.3
Q ss_pred eeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHH
Q 003886 574 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 653 (789)
Q Consensus 574 ~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~ 653 (789)
..+.+.++.|. ..+++|+||++||+... ...|......|+++||.|+++|++|..+.+ ...+++
T Consensus 37 ~~~p~~v~~P~---~~g~~PvVv~lHG~~~~--~~~y~~l~~~Las~G~~VvapD~~g~~~~~-----------~~~~i~ 100 (313)
T PLN00021 37 PPKPLLVATPS---EAGTYPVLLFLHGYLLY--NSFYSQLLQHIASHGFIVVAPQLYTLAGPD-----------GTDEIK 100 (313)
T ss_pred CCceEEEEeCC---CCCCCCEEEEECCCCCC--cccHHHHHHHHHhCCCEEEEecCCCcCCCC-----------chhhHH
Confidence 45788899997 46789999999997653 446777788999999999999998732110 123456
Q ss_pred HHHHHHHHHHHc--------CCCCCccEEEEEcCccHHHHHHHHHhCCC-----ceeEEEEeCCccc
Q 003886 654 DVLTAIDHVIDM--------GLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAAAARNPLCN 707 (789)
Q Consensus 654 D~~~~i~~l~~~--------~~~d~~rv~l~G~S~GG~~a~~~~~~~p~-----~~~a~v~~~pv~~ 707 (789)
|..++++|+.+. ..+|.++++|+|||+||++++.++.++++ +|+++|+.+|+..
T Consensus 101 d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g 167 (313)
T PLN00021 101 DAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDG 167 (313)
T ss_pred HHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeeccccc
Confidence 777777877652 23677899999999999999999998764 6889999988764
No 87
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=99.38 E-value=1.2e-11 Score=128.55 Aligned_cols=107 Identities=19% Similarity=0.259 Sum_probs=78.0
Q ss_pred CCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCC
Q 003886 589 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (789)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (789)
++..|.||++||..++ ...|......|.++||.|+++|++| +|.+... . .....+++..+.+..+++.- .
T Consensus 15 ~~~~p~vvliHG~~~~--~~~w~~~~~~L~~~g~~vi~~dl~g---~G~s~~~--~--~~~~~~~~~~~~l~~~i~~l-~ 84 (273)
T PLN02211 15 NRQPPHFVLIHGISGG--SWCWYKIRCLMENSGYKVTCIDLKS---AGIDQSD--A--DSVTTFDEYNKPLIDFLSSL-P 84 (273)
T ss_pred cCCCCeEEEECCCCCC--cCcHHHHHHHHHhCCCEEEEecccC---CCCCCCC--c--ccCCCHHHHHHHHHHHHHhc-C
Confidence 3456899999997664 4567777888988999999999998 4543211 1 11134555555554444431 1
Q ss_pred CCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 669 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
..+++.|+||||||.++..++.++|++++++|..++.
T Consensus 85 ~~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~ 121 (273)
T PLN02211 85 ENEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAAT 121 (273)
T ss_pred CCCCEEEEEECchHHHHHHHHHhChhheeEEEEeccc
Confidence 2478999999999999999999999999999998764
No 88
>PRK10349 carboxylesterase BioH; Provisional
Probab=99.38 E-value=5.8e-12 Score=130.20 Aligned_cols=179 Identities=22% Similarity=0.244 Sum_probs=107.5
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCc
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (789)
.|.||++||.+.+ ...|......|.+ .|.|+++|+|| +|.+.. . .....+++.+ .+.+. ..+
T Consensus 13 ~~~ivllHG~~~~--~~~w~~~~~~L~~-~~~vi~~Dl~G---~G~S~~---~---~~~~~~~~~~---~l~~~---~~~ 74 (256)
T PRK10349 13 NVHLVLLHGWGLN--AEVWRCIDEELSS-HFTLHLVDLPG---FGRSRG---F---GALSLADMAE---AVLQQ---APD 74 (256)
T ss_pred CCeEEEECCCCCC--hhHHHHHHHHHhc-CCEEEEecCCC---CCCCCC---C---CCCCHHHHHH---HHHhc---CCC
Confidence 3569999996654 5677777777865 49999999998 555431 1 1223444443 33333 347
Q ss_pred cEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCC-cc-------------hhhhh------ccCccc
Q 003886 672 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIP-DW-------------CYVES------YGSKGK 731 (789)
Q Consensus 672 rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~-~~-------------~~~~~------~~~~~~ 731 (789)
++.++|||+||++++.++.++|++++++|+.++.............. .+ ..... +.....
T Consensus 75 ~~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (256)
T PRK10349 75 KAIWLGWSLGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDFQRTVERFLALQTMGTETA 154 (256)
T ss_pred CeEEEEECHHHHHHHHHHHhChHhhheEEEecCccceecCCCCCcccHHHHHHHHHHHHhchHHHHHHHHHHHHccCchH
Confidence 89999999999999999999999999999987643211000000000 00 00000 000000
Q ss_pred c--------ccCC--CCChhh----HHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCCC
Q 003886 732 D--------SFTE--SPSVED----LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPFS 788 (789)
Q Consensus 732 ~--------~~~~--~~~~~~----~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~~ 788 (789)
. .+.. .+.... ...+...+....+.++++|+|+++|++|..+|.+.+..+.+.+++.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~i~~~ 225 (256)
T PRK10349 155 RQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLWPHS 225 (256)
T ss_pred HHHHHHHHHHhhccCCCcHHHHHHHHHHHHhCccHHHHhhcCCCeEEEecCCCccCCHHHHHHHHHhCCCC
Confidence 0 0000 000000 0112223333457889999999999999999999998888887764
No 89
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=99.37 E-value=2.1e-11 Score=123.00 Aligned_cols=110 Identities=21% Similarity=0.340 Sum_probs=85.9
Q ss_pred CCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCC
Q 003886 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (789)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (789)
.....|+|+++||.|.. ..+|+.....|+++||.|+++|+|| ||.+... ...-...+..+...+..+++.
T Consensus 40 g~~~gP~illlHGfPe~--wyswr~q~~~la~~~~rviA~DlrG---yG~Sd~P---~~~~~Yt~~~l~~di~~lld~-- 109 (322)
T KOG4178|consen 40 GPGDGPIVLLLHGFPES--WYSWRHQIPGLASRGYRVIAPDLRG---YGFSDAP---PHISEYTIDELVGDIVALLDH-- 109 (322)
T ss_pred cCCCCCEEEEEccCCcc--chhhhhhhhhhhhcceEEEecCCCC---CCCCCCC---CCcceeeHHHHHHHHHHHHHH--
Confidence 34568999999999885 5577778889999999999999998 7776542 232334455555555555554
Q ss_pred CCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccc
Q 003886 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 707 (789)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~ 707 (789)
+..+|+.++||.+|++++..++..+|+++++.|+.+....
T Consensus 110 Lg~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~~ 149 (322)
T KOG4178|consen 110 LGLKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPFP 149 (322)
T ss_pred hccceeEEEeccchhHHHHHHHHhChhhcceEEEecCCCC
Confidence 2368999999999999999999999999999999876544
No 90
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.37 E-value=7.8e-12 Score=135.35 Aligned_cols=130 Identities=15% Similarity=0.187 Sum_probs=84.3
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCch---------hhHHHH---HHHHHCCcEEEEEcCCCC-CCC-Cc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS---------SYSKSL---AFLSSVGYSLLIVNYRGS-LGF-GE 637 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~---------~~~~~~---~~la~~Gy~V~~~d~rGs-~G~-G~ 637 (789)
+|..++...+-+.+ ....|.||++||.+++.... .|.... ..|...+|.|+++|+||. .|. +.
T Consensus 14 ~~~~~~y~~~g~~~---~~~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~~~g~s~~ 90 (351)
T TIGR01392 14 SDVRVAYETYGTLN---AERSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLGGCYGSTGP 90 (351)
T ss_pred CCceEEEEeccccC---CCCCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCCCCCCCCCC
Confidence 45566655554421 12347899999976643211 233332 255578899999999983 222 11
Q ss_pred hhhcc----CCCCCCcccHHHHHHHHHHHHHcCCCCCcc-EEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 638 EALQS----LPGKVGSQDVNDVLTAIDHVIDMGLANPSK-VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 638 ~~~~~----~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r-v~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
+.... ...+.....++|+.+.+..+++. +..++ +.|+|||+||++++.++.++|++++++|+.++..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 162 (351)
T TIGR01392 91 SSINPGGRPYGSDFPLITIRDDVKAQKLLLDH--LGIEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATSA 162 (351)
T ss_pred CCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHH--cCCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEccCC
Confidence 11000 00012234577888777777765 34567 9999999999999999999999999999988754
No 91
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=99.37 E-value=1.4e-11 Score=125.94 Aligned_cols=104 Identities=19% Similarity=0.294 Sum_probs=77.9
Q ss_pred cEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHH-HHHHHHcCCCCCc
Q 003886 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTA-IDHVIDMGLANPS 671 (789)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~-i~~l~~~~~~d~~ 671 (789)
|+||++||.+++ ...|......|+ +||.|+++|+|| +|.+.. +......+++++... +..+++. .+.+
T Consensus 2 ~~vv~~hG~~~~--~~~~~~~~~~L~-~~~~v~~~d~~g---~G~s~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 70 (251)
T TIGR03695 2 PVLVFLHGFLGS--GADWQALIELLG-PHFRCLAIDLPG---HGSSQS---PDEIERYDFEEAAQDILATLLDQ--LGIE 70 (251)
T ss_pred CEEEEEcCCCCc--hhhHHHHHHHhc-ccCeEEEEcCCC---CCCCCC---CCccChhhHHHHHHHHHHHHHHH--cCCC
Confidence 789999997654 556777778887 899999999998 454421 111122345555554 5555554 4567
Q ss_pred cEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccc
Q 003886 672 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 707 (789)
Q Consensus 672 rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~ 707 (789)
++.++|||+||++++.++.++|++++++++.++...
T Consensus 71 ~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~~~ 106 (251)
T TIGR03695 71 PFFLVGYSMGGRIALYYALQYPERVQGLILESGSPG 106 (251)
T ss_pred eEEEEEeccHHHHHHHHHHhCchheeeeEEecCCCC
Confidence 899999999999999999999999999999887643
No 92
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=99.36 E-value=3.1e-11 Score=125.99 Aligned_cols=200 Identities=20% Similarity=0.212 Sum_probs=126.7
Q ss_pred ecCCCeeEEEEEEecCCC---CCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCC
Q 003886 569 TKGAQKPFEAIFVSSSHK---KDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 645 (789)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~---~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~ 645 (789)
+-.||..+..-.+.+..- ......|+||++||-.++.....-......+.++||.|+++|.||.+|.--.. +.
T Consensus 99 ~~~DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG~~g~~LtT----pr 174 (409)
T KOG1838|consen 99 KTSDGGTVTLDWVENPDSRCRTDDGTDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRGLGGSKLTT----PR 174 (409)
T ss_pred EeCCCCEEEEeeccCcccccCCCCCCCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCCCCCCccCC----Cc
Confidence 334666665555544422 11356799999999877654433344566777899999999999955432211 22
Q ss_pred CCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCC---CceeEEEEeCCccchh-hhhcCCCCCcch
Q 003886 646 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLCNLA-LMVGTTDIPDWC 721 (789)
Q Consensus 646 ~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p---~~~~a~v~~~pv~~~~-~~~~~~~~~~~~ 721 (789)
-+....-+|+.++++++.++ ....++..+|.|+||.+.+.++++.. ...+|+++.+|+--.. .-.-......+.
T Consensus 175 ~f~ag~t~Dl~~~v~~i~~~--~P~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pwd~~~~~~~~~~~~~~~~ 252 (409)
T KOG1838|consen 175 LFTAGWTEDLREVVNHIKKR--YPQAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPWDLLAASRSIETPLYRRF 252 (409)
T ss_pred eeecCCHHHHHHHHHHHHHh--CCCCceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccchhhhhhhHHhcccchHH
Confidence 33334578999999999998 45678999999999999999988643 3556666666654220 000000011111
Q ss_pred hhhh----------------------------------ccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEe
Q 003886 722 YVES----------------------------------YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLG 767 (789)
Q Consensus 722 ~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G 767 (789)
|... |-........+.+ .-.+.|.+.|+..++++|++|+|+|+.
T Consensus 253 y~~~l~~~l~~~~~~~r~~~~~~~vd~d~~~~~~SvreFD~~~t~~~~gf~--~~deYY~~aSs~~~v~~I~VP~L~ina 330 (409)
T KOG1838|consen 253 YNRALTLNLKRIVLRHRHTLFEDPVDFDVILKSRSVREFDEALTRPMFGFK--SVDEYYKKASSSNYVDKIKVPLLCINA 330 (409)
T ss_pred HHHHHHHhHHHHHhhhhhhhhhccchhhhhhhcCcHHHHHhhhhhhhcCCC--cHHHHHhhcchhhhcccccccEEEEec
Confidence 1110 0001111112222 234567788999999999999999999
Q ss_pred CCCCCCChH
Q 003886 768 AQDLRVPVS 776 (789)
Q Consensus 768 ~~D~~vp~~ 776 (789)
.+|+++|.+
T Consensus 331 ~DDPv~p~~ 339 (409)
T KOG1838|consen 331 ADDPVVPEE 339 (409)
T ss_pred CCCCCCCcc
Confidence 999999984
No 93
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=99.36 E-value=9.8e-12 Score=131.96 Aligned_cols=119 Identities=18% Similarity=0.265 Sum_probs=81.1
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcc
Q 003886 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~ 650 (789)
.+|..++....- ..+.+.||++||++++... ......+...+|.|+++|+|| +|.+.... .....
T Consensus 12 ~~~~~l~y~~~g------~~~~~~lvllHG~~~~~~~---~~~~~~~~~~~~~vi~~D~~G---~G~S~~~~---~~~~~ 76 (306)
T TIGR01249 12 SDNHQLYYEQSG------NPDGKPVVFLHGGPGSGTD---PGCRRFFDPETYRIVLFDQRG---CGKSTPHA---CLEEN 76 (306)
T ss_pred CCCcEEEEEECc------CCCCCEEEEECCCCCCCCC---HHHHhccCccCCEEEEECCCC---CCCCCCCC---CcccC
Confidence 356666543321 1124568999998775322 122334556789999999998 55553211 11123
Q ss_pred cHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
..+++.+.+..+++. ++.+++.++|||+||++++.++.++|++++++|+.++..
T Consensus 77 ~~~~~~~dl~~l~~~--l~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~ 130 (306)
T TIGR01249 77 TTWDLVADIEKLREK--LGIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIFL 130 (306)
T ss_pred CHHHHHHHHHHHHHH--cCCCCEEEEEECHHHHHHHHHHHHChHhhhhheeecccc
Confidence 456777777777765 345789999999999999999999999999999887653
No 94
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.36 E-value=4.6e-12 Score=129.28 Aligned_cols=178 Identities=20% Similarity=0.259 Sum_probs=105.3
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCc
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (789)
.|.||++||.+.+ ...|......|+ .+|.|+++|+|| +|.+... ...+++++.+. +.+. + .+
T Consensus 4 ~~~iv~~HG~~~~--~~~~~~~~~~l~-~~~~vi~~d~~G---~G~s~~~------~~~~~~~~~~~---~~~~--~-~~ 65 (245)
T TIGR01738 4 NVHLVLIHGWGMN--AEVFRCLDEELS-AHFTLHLVDLPG---HGRSRGF------GPLSLADAAEA---IAAQ--A-PD 65 (245)
T ss_pred CceEEEEcCCCCc--hhhHHHHHHhhc-cCeEEEEecCCc---CccCCCC------CCcCHHHHHHH---HHHh--C-CC
Confidence 3789999996553 456766677775 469999999998 5543211 12234444443 3333 2 36
Q ss_pred cEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCC-CCC-------------cch-hhh------hccCcc
Q 003886 672 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT-DIP-------------DWC-YVE------SYGSKG 730 (789)
Q Consensus 672 rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~-~~~-------------~~~-~~~------~~~~~~ 730 (789)
++.++|||+||++++.++.++|++++++|+.++...+....... ... .+. ... .+....
T Consensus 66 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (245)
T TIGR01738 66 PAIWLGWSLGGLVALHIAATHPDRVRALVTVASSPCFSAREDWPEGIKPDVLTGFQQQLSDDYQRTIERFLALQTLGTPT 145 (245)
T ss_pred CeEEEEEcHHHHHHHHHHHHCHHhhheeeEecCCcccccCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCc
Confidence 89999999999999999999999999999887654221000000 000 000 000 000000
Q ss_pred cc--------cc--CCCCChhh----HHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 731 KD--------SF--TESPSVED----LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 731 ~~--------~~--~~~~~~~~----~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.. .+ ...+.... ...+...+....+.++++|+|+++|++|..+|++....+.+.+++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~~~~~~~~~~~~~~~~ 216 (245)
T TIGR01738 146 ARQDARALKQTLLARPTPNVQVLQAGLEILATVDLRQPLQNISVPFLRLYGYLDGLVPAKVVPYLDKLAPH 216 (245)
T ss_pred cchHHHHHHHHhhccCCCCHHHHHHHHHHhhcccHHHHHhcCCCCEEEEeecCCcccCHHHHHHHHHhCCC
Confidence 00 00 00000000 011111222234678999999999999999999999988888765
No 95
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.35 E-value=5.8e-11 Score=119.97 Aligned_cols=279 Identities=12% Similarity=0.042 Sum_probs=164.9
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
..+....||++|++||..+.. ....+|.+..+++ .++...-.+.+..| ..+.||||.++|+-...++. .
T Consensus 225 dEVWfl~FS~nGkyLAsaSkD--~Taiiw~v~~d~~-~kl~~tlvgh~~~V------~yi~wSPDdryLlaCg~~e~--~ 293 (519)
T KOG0293|consen 225 DEVWFLQFSHNGKYLASASKD--STAIIWIVVYDVH-FKLKKTLVGHSQPV------SYIMWSPDDRYLLACGFDEV--L 293 (519)
T ss_pred CcEEEEEEcCCCeeEeeccCC--ceEEEEEEecCcc-eeeeeeeecccCce------EEEEECCCCCeEEecCchHh--e
Confidence 458889999999999987654 3345666665655 33333223334444 78999999999887665543 2
Q ss_pred CCccCCCCCCCCCCcCC-CCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccE
Q 003886 234 PTFSLGSTKGGSSDKDC-NSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 312 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~ 312 (789)
..|+...+......+.. .--.....|-||.-...++..+.+++.||+++.......+.. .-.+..++.++||++
T Consensus 294 ~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr-~~~v~dlait~Dgk~---- 368 (519)
T KOG0293|consen 294 SLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVR-DPKVHDLAITYDGKY---- 368 (519)
T ss_pred eeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccc-cceeEEEEEcCCCcE----
Confidence 23443333222222221 122234578899766667888899999999987655443211 224678999999999
Q ss_pred EEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecC
Q 003886 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (789)
Q Consensus 313 l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~ 392 (789)
++.+. .+..|..++. ++...+.+......+.+...|.||++++..-.
T Consensus 369 vl~v~---------------~d~~i~l~~~-----------------e~~~dr~lise~~~its~~iS~d~k~~LvnL~- 415 (519)
T KOG0293|consen 369 VLLVT---------------VDKKIRLYNR-----------------EARVDRGLISEEQPITSFSISKDGKLALVNLQ- 415 (519)
T ss_pred EEEEe---------------cccceeeech-----------------hhhhhhccccccCceeEEEEcCCCcEEEEEcc-
Confidence 77776 2236777776 45555545555556888999999996544332
Q ss_pred CCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003886 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (789)
Q Consensus 393 ~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (789)
+..+++||++.......-.+...-. | +-+-+|.--...++.+++.++ .+|.
T Consensus 416 ----------~qei~LWDl~e~~lv~kY~Ghkq~~--------------f---iIrSCFgg~~~~fiaSGSED~--kvyI 466 (519)
T KOG0293|consen 416 ----------DQEIHLWDLEENKLVRKYFGHKQGH--------------F---IIRSCFGGGNDKFIASGSEDS--KVYI 466 (519)
T ss_pred ----------cCeeEEeecchhhHHHHhhcccccc--------------e---EEEeccCCCCcceEEecCCCc--eEEE
Confidence 2359999997432221111211000 0 011233222224555554444 5777
Q ss_pred EECCCCcEEEecCCCC-CceeEEeeecCCEEEEEEeCCC
Q 003886 473 VNVSSGELLRITPAES-NFSWSLLTLDGDNIIAVSSSPV 510 (789)
Q Consensus 473 ~dl~tg~~~~lt~~~~-~~~~~~~s~dg~~l~~~~ss~~ 510 (789)
++..+|++.....++. .+..+++.|....+++++++..
T Consensus 467 Whr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDg 505 (519)
T KOG0293|consen 467 WHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDG 505 (519)
T ss_pred EEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCC
Confidence 7888888776665554 3344455555555555554443
No 96
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.35 E-value=8.8e-12 Score=124.68 Aligned_cols=125 Identities=17% Similarity=0.210 Sum_probs=81.5
Q ss_pred CCccCceEEEEEccCCc--eEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccc
Q 003886 268 AGKRQPSLFVININSGE--VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLY 345 (789)
Q Consensus 268 ~~~~~~~l~v~d~~~g~--~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~ 345 (789)
++..+..+|+|+....+ +.+. +....-+.++.||||++. |+..+.+ ..+.+++-.
T Consensus 341 SgsDd~tlflW~p~~~kkpi~rm--tgHq~lVn~V~fSPd~r~----IASaSFD---------------kSVkLW~g~-- 397 (480)
T KOG0271|consen 341 SGSDDFTLFLWNPFKSKKPITRM--TGHQALVNHVSFSPDGRY----IASASFD---------------KSVKLWDGR-- 397 (480)
T ss_pred EecCCceEEEecccccccchhhh--hchhhheeeEEECCCccE----EEEeecc---------------cceeeeeCC--
Confidence 34456789999875332 3344 233446789999999998 8887732 245555541
Q ss_pred cchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceee
Q 003886 346 KSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVD 425 (789)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~ 425 (789)
.+.-...+..+-..+...+||.|.+.|+..+.+. .|.+||+.+.+...-..+..+
T Consensus 398 --------------tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDs-----------TLKvw~V~tkKl~~DLpGh~D 452 (480)
T KOG0271|consen 398 --------------TGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDS-----------TLKVWDVRTKKLKQDLPGHAD 452 (480)
T ss_pred --------------CcchhhhhhhccceeEEEEeccCccEEEEcCCCc-----------eEEEEEeeeeeecccCCCCCc
Confidence 3444556666777899999999999777666443 589999887555322222211
Q ss_pred EEeeeeccCCCCCccccccCCCCCccccCCCEEE
Q 003886 426 VIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTML 459 (789)
Q Consensus 426 v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~ 459 (789)
.+..+.|+|||.++.
T Consensus 453 -------------------EVf~vDwspDG~rV~ 467 (480)
T KOG0271|consen 453 -------------------EVFAVDWSPDGQRVA 467 (480)
T ss_pred -------------------eEEEEEecCCCceee
Confidence 234567999999663
No 97
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.34 E-value=3e-10 Score=116.73 Aligned_cols=334 Identities=13% Similarity=0.110 Sum_probs=191.6
Q ss_pred CceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEec---CCCCCCeEEEE
Q 003886 108 GTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRN---PENESPIQFEL 184 (789)
Q Consensus 108 g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~---~~~~~~~~~~i 184 (789)
|.+|.|+... .||...+ ..++.+++|..- +-+..|.+||||+++||.+- .......+|.+
T Consensus 50 GD~IiFt~~D----------dlWe~sl--k~g~~~ritS~l-----GVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v 112 (668)
T COG4946 50 GDRIIFTCCD----------DLWEYSL--KDGKPLRITSGL-----GVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVV 112 (668)
T ss_pred CcEEEEEech----------HHHHhhh--ccCCeeEEeccc-----ceeccccCCCCCcEEEEEEEEecCCCccccEEEE
Confidence 6688887543 6788776 445667777653 45778999999999999541 12245578999
Q ss_pred e-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCC-----C-CCC---------CCc
Q 003886 185 W-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGST-----K-GGS---------SDK 248 (789)
Q Consensus 185 ~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~-----~-~~~---------~~~ 248 (789)
. .+|+.+++|... .... .-.-|+|||+.|++.-.... -+-|...++ . ..+ ..+
T Consensus 113 ~~e~Ge~kRiTyfG-r~fT--------~VaG~~~dg~iiV~TD~~tP--F~q~~~lYkv~~dg~~~e~LnlGpathiv~~ 181 (668)
T COG4946 113 PSEDGEAKRITYFG-RRFT--------RVAGWIPDGEIIVSTDFHTP--FSQWTELYKVNVDGIKTEPLNLGPATHIVIK 181 (668)
T ss_pred eCCCCcEEEEEEec-cccc--------eeeccCCCCCEEEEeccCCC--cccceeeeEEccCCceeeeccCCceeeEEEe
Confidence 8 789999999872 2211 12459999998887533221 111211110 0 000 011
Q ss_pred CCCCCCCccee-eCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeee
Q 003886 249 DCNSWKGQGDW-EEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGI 327 (789)
Q Consensus 249 ~~~~~~~~~~~-~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~ 327 (789)
+...+.+...| -|+| ..|.+..+..||+-...+...+.+ ..-+..+..|..- |.+ |+|.++-++
T Consensus 182 dg~ivigRntydLP~W-K~YkGGtrGklWis~d~g~tFeK~--vdl~~~vS~PmIV--~~R----vYFlsD~eG------ 246 (668)
T COG4946 182 DGIIVIGRNTYDLPHW-KGYKGGTRGKLWISSDGGKTFEKF--VDLDGNVSSPMIV--GER----VYFLSDHEG------ 246 (668)
T ss_pred CCEEEEccCcccCccc-ccccCCccceEEEEecCCcceeee--eecCCCcCCceEE--cce----EEEEecccC------
Confidence 22222222222 3455 345566678888655444345554 2333344455443 446 899985443
Q ss_pred eeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeE
Q 003886 328 KYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLH 407 (789)
Q Consensus 328 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~ 407 (789)
-.+||.+|+ ++...++-|+.... ..-..+.|||+|+|...- +||
T Consensus 247 ------~GnlYSvdl-----------------dGkDlrrHTnFtdY-Y~R~~nsDGkrIvFq~~G------------dIy 290 (668)
T COG4946 247 ------VGNLYSVDL-----------------DGKDLRRHTNFTDY-YPRNANSDGKRIVFQNAG------------DIY 290 (668)
T ss_pred ------ccceEEecc-----------------CCchhhhcCCchhc-cccccCCCCcEEEEecCC------------cEE
Confidence 247999999 66666666654221 111246799999987643 366
Q ss_pred EeecCCCCCCCcccc--e-----------------------eeEEeeee-------------------------------
Q 003886 408 RIDWPTNGNFSSLEK--I-----------------------VDVIPVVQ------------------------------- 431 (789)
Q Consensus 408 ~~d~~~~~~~~~t~~--~-----------------------~~v~~~~~------------------------------- 431 (789)
++|.++.....+.-+ . .+.+.++.
T Consensus 291 lydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~ 370 (668)
T COG4946 291 LYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGYSIQVGKKGGVRYRRIQVD 370 (668)
T ss_pred EeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCeeEEcCCCCceEEEEEccC
Confidence 666544332211100 0 00000000
Q ss_pred ------ccCCCCCccccc-------------cCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC-Cce
Q 003886 432 ------CAEGDCFPGLYS-------------SSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES-NFS 491 (789)
Q Consensus 432 ------~~~~~~f~g~~~-------------~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~-~~~ 491 (789)
...++++-|+|. ..+..+..++||+.+++. ..+..||.+|+++|+++.+-.... .+.
T Consensus 371 ~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vva---Ndr~el~vididngnv~~idkS~~~lIt 447 (668)
T COG4946 371 PEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVA---NDRFELWVIDIDNGNVRLIDKSEYGLIT 447 (668)
T ss_pred CcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEE---cCceEEEEEEecCCCeeEecccccceeE
Confidence 001122222332 123456678899877654 446689999999999998876653 455
Q ss_pred eEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 492 WSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 492 ~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
...+++++.+++|..-..--...|.+++..++
T Consensus 448 df~~~~nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 448 DFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred EEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence 56889999999888765555555667776543
No 98
>PLN02872 triacylglycerol lipase
Probab=99.33 E-value=1.2e-11 Score=133.83 Aligned_cols=136 Identities=20% Similarity=0.215 Sum_probs=85.3
Q ss_pred eeecCCCeeEEEEEEecCCC-CCCCCCcEEEEEcCCCCCCCchhh----HHHHHHHHHCCcEEEEEcCCCCCC-CCchhh
Q 003886 567 NLTKGAQKPFEAIFVSSSHK-KDCSCDPLIVVLHGGPHSVSLSSY----SKSLAFLSSVGYSLLIVNYRGSLG-FGEEAL 640 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~-~~~~~~P~vv~~HGg~~~~~~~~~----~~~~~~la~~Gy~V~~~d~rGs~G-~G~~~~ 640 (789)
.++..||..|...-+.+.+. ....+.|.|+++||...+...... ......|+++||.|+++|.||.+. +|....
T Consensus 48 ~v~T~DGy~L~l~ri~~~~~~~~~~~~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~GydV~l~n~RG~~~s~gh~~~ 127 (395)
T PLN02872 48 TIQTKDGYLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGDAWFLNSPEQSLGFILADHGFDVWVGNVRGTRWSYGHVTL 127 (395)
T ss_pred EEECCCCcEEEEEEcCCCCCCCCCCCCCeEEEeCcccccccceeecCcccchHHHHHhCCCCcccccccccccccCCCCC
Confidence 34556787776555533211 112346889999997654322110 123346889999999999999542 232221
Q ss_pred ccCCC-----CCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCC---ceeEEEEeCCcc
Q 003886 641 QSLPG-----KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLC 706 (789)
Q Consensus 641 ~~~~~-----~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~---~~~a~v~~~pv~ 706 (789)
..... .+......|+.++++++.+.. .+++.++|||+||.+++.++ .+|+ +++++++.+|+.
T Consensus 128 ~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~---~~~v~~VGhS~Gg~~~~~~~-~~p~~~~~v~~~~~l~P~~ 197 (395)
T PLN02872 128 SEKDKEFWDWSWQELALYDLAEMIHYVYSIT---NSKIFIVGHSQGTIMSLAAL-TQPNVVEMVEAAALLCPIS 197 (395)
T ss_pred CccchhccCCcHHHHHHHHHHHHHHHHHhcc---CCceEEEEECHHHHHHHHHh-hChHHHHHHHHHHHhcchh
Confidence 11111 121222469999999998652 46899999999999998655 4675 577777777764
No 99
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=99.33 E-value=2.1e-11 Score=132.20 Aligned_cols=103 Identities=16% Similarity=0.261 Sum_probs=73.8
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCc
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (789)
.|.||++||.+.+ ...|...+..|++ +|.|+++|++| +|.+.... .. ...++++.+.+..+++. ...+
T Consensus 88 gp~lvllHG~~~~--~~~w~~~~~~L~~-~~~via~Dl~G---~G~S~~~~---~~-~~~~~~~a~~l~~~l~~--l~~~ 155 (360)
T PLN02679 88 GPPVLLVHGFGAS--IPHWRRNIGVLAK-NYTVYAIDLLG---FGASDKPP---GF-SYTMETWAELILDFLEE--VVQK 155 (360)
T ss_pred CCeEEEECCCCCC--HHHHHHHHHHHhc-CCEEEEECCCC---CCCCCCCC---Cc-cccHHHHHHHHHHHHHH--hcCC
Confidence 4789999997764 5577777777765 79999999998 66553211 11 22345555544444443 3457
Q ss_pred cEEEEEcCccHHHHHHHHH-hCCCceeEEEEeCCcc
Q 003886 672 KVTVVGGSHGGFLTTHLIG-QAPDKFVAAAARNPLC 706 (789)
Q Consensus 672 rv~l~G~S~GG~~a~~~~~-~~p~~~~a~v~~~pv~ 706 (789)
++.|+|||+||++++.++. ++|++++++|+.++..
T Consensus 156 ~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~ 191 (360)
T PLN02679 156 PTVLIGNSVGSLACVIAASESTRDLVRGLVLLNCAG 191 (360)
T ss_pred CeEEEEECHHHHHHHHHHHhcChhhcCEEEEECCcc
Confidence 8999999999999998876 4699999999998753
No 100
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=99.32 E-value=7.6e-12 Score=133.13 Aligned_cols=195 Identities=19% Similarity=0.224 Sum_probs=125.4
Q ss_pred CeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhH-H-HHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcc
Q 003886 573 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS-K-SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (789)
Q Consensus 573 g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~-~-~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~ 650 (789)
+..+...+|.| ......+.|+||++|||++........ . ....++..|+.|+++|||-.+.+ ....
T Consensus 61 ~~~~~~~~y~p-~~~~~~~~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrlaPe~-----------~~p~ 128 (312)
T COG0657 61 GDGVPVRVYRP-DRKAAATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEH-----------PFPA 128 (312)
T ss_pred CCceeEEEECC-CCCCCCCCcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCCCCC-----------CCCc
Confidence 33466788888 222556799999999998865544333 3 34466789999999999975543 2234
Q ss_pred cHHHHHHHHHHHHHcC---CCCCccEEEEEcCccHHHHHHHHHhCCC----ceeEEEEeCCccchhhhhcCCCCCcchhh
Q 003886 651 DVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALMVGTTDIPDWCYV 723 (789)
Q Consensus 651 ~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~~~~~p~----~~~a~v~~~pv~~~~~~~~~~~~~~~~~~ 723 (789)
.++|+.+++.|+.++. .+|+++|+|+|+|.||.+++.++....+ ..++.++.+|.++... .......+...
T Consensus 129 ~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~--~~~~~~~~~~~ 206 (312)
T COG0657 129 ALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTS--SAASLPGYGEA 206 (312)
T ss_pred hHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcc--cccchhhcCCc
Confidence 5889999999999873 4899999999999999999998876433 5789999999988754 11111000000
Q ss_pred hhccC-----ccccccCCCCChhhHHHHHhcCcccc--CCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 724 ESYGS-----KGKDSFTESPSVEDLTRFHSKSPISH--ISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 724 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~sp~~~--~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
..+.. .....+..... +.. .-..+|+.. +.. -.|++|++|+.|...+ ++..+.++|+.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~--~~~-~p~~spl~~~~~~~-lPP~~i~~a~~D~l~~--~~~~~a~~L~~ 271 (312)
T COG0657 207 DLLDAAAILAWFADLYLGAAP--DRE-DPEASPLASDDLSG-LPPTLIQTAEFDPLRD--EGEAYAERLRA 271 (312)
T ss_pred cccCHHHHHHHHHHHhCcCcc--ccC-CCccCccccccccC-CCCEEEEecCCCcchh--HHHHHHHHHHH
Confidence 00000 00000000000 000 012334332 334 5789999999999998 88888888764
No 101
>PLN02578 hydrolase
Probab=99.32 E-value=3.5e-11 Score=130.32 Aligned_cols=100 Identities=20% Similarity=0.203 Sum_probs=68.1
Q ss_pred cEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCcc
Q 003886 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 672 (789)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 672 (789)
|.||++||.+.+ ...|......|+ ++|.|+++|++| +|.+.... ...+..+..+.+..+++. +..++
T Consensus 87 ~~vvliHG~~~~--~~~w~~~~~~l~-~~~~v~~~D~~G---~G~S~~~~-----~~~~~~~~a~~l~~~i~~--~~~~~ 153 (354)
T PLN02578 87 LPIVLIHGFGAS--AFHWRYNIPELA-KKYKVYALDLLG---FGWSDKAL-----IEYDAMVWRDQVADFVKE--VVKEP 153 (354)
T ss_pred CeEEEECCCCCC--HHHHHHHHHHHh-cCCEEEEECCCC---CCCCCCcc-----cccCHHHHHHHHHHHHHH--hccCC
Confidence 568899996653 456666666675 469999999998 44433211 112333322222222222 12468
Q ss_pred EEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 673 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 673 v~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
+.++|||+||++++.++.++|++++++|+.++.
T Consensus 154 ~~lvG~S~Gg~ia~~~A~~~p~~v~~lvLv~~~ 186 (354)
T PLN02578 154 AVLVGNSLGGFTALSTAVGYPELVAGVALLNSA 186 (354)
T ss_pred eEEEEECHHHHHHHHHHHhChHhcceEEEECCC
Confidence 999999999999999999999999999998764
No 102
>PRK07581 hypothetical protein; Validated
Probab=99.32 E-value=1.4e-11 Score=132.88 Aligned_cols=109 Identities=19% Similarity=0.108 Sum_probs=69.5
Q ss_pred CCcEEEEEcCCCCCCCchhhHHHH---HHHHHCCcEEEEEcCCCCCCCCchhhccCC-CCCC-----cccH-HHHHHHHH
Q 003886 591 CDPLIVVLHGGPHSVSLSSYSKSL---AFLSSVGYSLLIVNYRGSLGFGEEALQSLP-GKVG-----SQDV-NDVLTAID 660 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~---~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~-~~~~-----~~~~-~D~~~~i~ 660 (789)
+.|+||++||++++. ..|.... ..|...+|.|+++|+|| +|.+...... ..+. ...+ +|+.+...
T Consensus 40 ~~~~vll~~~~~~~~--~~~~~~~~~~~~l~~~~~~vi~~D~~G---~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (339)
T PRK07581 40 KDNAILYPTWYSGTH--QDNEWLIGPGRALDPEKYFIIIPNMFG---NGLSSSPSNTPAPFNAARFPHVTIYDNVRAQHR 114 (339)
T ss_pred CCCEEEEeCCCCCCc--ccchhhccCCCccCcCceEEEEecCCC---CCCCCCCCCCCCCCCCCCCCceeHHHHHHHHHH
Confidence 457788877765432 2232222 25666789999999998 5544321110 0111 1123 44444344
Q ss_pred HHHHcCCCCCccE-EEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 661 HVIDMGLANPSKV-TVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 661 ~l~~~~~~d~~rv-~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
.+.+. ...+++ .|+|||+||++++.++.++|++++++|+.++..
T Consensus 115 ~l~~~--lgi~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvli~~~~ 159 (339)
T PRK07581 115 LLTEK--FGIERLALVVGWSMGAQQTYHWAVRYPDMVERAAPIAGTA 159 (339)
T ss_pred HHHHH--hCCCceEEEEEeCHHHHHHHHHHHHCHHHHhhheeeecCC
Confidence 45553 345784 799999999999999999999999999886543
No 103
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.32 E-value=1.4e-10 Score=120.47 Aligned_cols=270 Identities=17% Similarity=0.154 Sum_probs=144.2
Q ss_pred CCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceee
Q 003886 137 ENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISW 215 (789)
Q Consensus 137 ~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~w 215 (789)
.|.+..+||..+...-...-..+.|.+||++|+|.++.+ +..++|.++ .+++..|+|+.+... . .+..+
T Consensus 19 TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~d-g~~nly~lDL~t~~i~QLTdg~g~~--------~-~g~~~ 88 (386)
T PF14583_consen 19 TGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFD-GNRNLYLLDLATGEITQLTDGPGDN--------T-FGGFL 88 (386)
T ss_dssp T--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TT-SS-EEEEEETTT-EEEE---SS-B---------T-TT-EE
T ss_pred CCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccC-CCcceEEEEcccCEEEECccCCCCC--------c-cceEE
Confidence 344556676544211111233578999999999988865 888999999 888999999875432 1 36779
Q ss_pred cCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCC
Q 003886 216 NSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL 295 (789)
Q Consensus 216 SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~ 295 (789)
||+++.|+|+.. ...|+.+|+++++.+.+...+..
T Consensus 89 s~~~~~~~Yv~~--------------------------------------------~~~l~~vdL~T~e~~~vy~~p~~- 123 (386)
T PF14583_consen 89 SPDDRALYYVKN--------------------------------------------GRSLRRVDLDTLEERVVYEVPDD- 123 (386)
T ss_dssp -TTSSEEEEEET--------------------------------------------TTEEEEEETTT--EEEEEE--TT-
T ss_pred ecCCCeEEEEEC--------------------------------------------CCeEEEEECCcCcEEEEEECCcc-
Confidence 999999999632 14789999999998877534433
Q ss_pred ccceEEEee--CCCCCccEEEEEeecCCceee-----e--eeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeee
Q 003886 296 SVGQVVWAP--LNEGLHQYLVFVGWSSETRKL-----G--IKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN 366 (789)
Q Consensus 296 ~~~~~~wSP--Dg~~~~~~l~f~~~~~~~~~~-----g--~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (789)
-.+.-.|+. |+.. ++.........+. + -.+..+..+.|+.+|+ .+|+.+.
T Consensus 124 ~~g~gt~v~n~d~t~----~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl-----------------~tG~~~~ 182 (386)
T PF14583_consen 124 WKGYGTWVANSDCTK----LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL-----------------KTGERKV 182 (386)
T ss_dssp EEEEEEEEE-TTSSE----EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET-----------------TT--EEE
T ss_pred cccccceeeCCCccE----EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC-----------------CCCceeE
Confidence 334456754 4555 5554432221110 0 0123355678999999 8899888
Q ss_pred cCCCCCccCcceecCC-CCEEEEEecCCCCCCCCcccc-ceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCcccccc
Q 003886 367 LTESISSAFFPRFSPD-GKFLVFLSAKSSVDSGAHSAT-DSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSS 444 (789)
Q Consensus 367 Lt~~~~~~~~p~~SpD-G~~la~~s~~~~~~~g~~~~~-~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~ 444 (789)
+.........+.|||. ...|.|+- . |++..- .+||.+|.++++.+.+...... .
T Consensus 183 v~~~~~wlgH~~fsP~dp~li~fCH-E-----Gpw~~Vd~RiW~i~~dg~~~~~v~~~~~~--e---------------- 238 (386)
T PF14583_consen 183 VFEDTDWLGHVQFSPTDPTLIMFCH-E-----GPWDLVDQRIWTINTDGSNVKKVHRRMEG--E---------------- 238 (386)
T ss_dssp EEEESS-EEEEEEETTEEEEEEEEE-------S-TTTSS-SEEEEETTS---EESS---TT--E----------------
T ss_pred EEecCccccCcccCCCCCCEEEEec-c-----CCcceeceEEEEEEcCCCcceeeecCCCC--c----------------
Confidence 8777777889999995 45556655 3 555553 4899999888766544321100 0
Q ss_pred CCCCCccccCCCEEEEEEEeCC--eEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEe
Q 003886 445 SILSNPWLSDGCTMLLSSIWGS--SQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSS 507 (789)
Q Consensus 445 ~~~~~~ws~Dg~~l~~~~~~~~--~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s 507 (789)
....--|++||+.|+|.+...+ ...|+.+|+.+++.+++...+. .+....++||+.++-=.+
T Consensus 239 ~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~-~~H~~ss~Dg~L~vGDG~ 302 (386)
T PF14583_consen 239 SVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPW-CSHFMSSPDGKLFVGDGG 302 (386)
T ss_dssp EEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-S-EEEEEE-TTSSEEEEEE-
T ss_pred ccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCc-eeeeEEcCCCCEEEecCC
Confidence 1122359999999999776443 4568899999998887755443 334445567776554443
No 104
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.31 E-value=1.1e-09 Score=114.15 Aligned_cols=67 Identities=19% Similarity=0.266 Sum_probs=49.2
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
+..+.|||||++.|.+..++ .++..+ .+|+...++.-...+.|.| ..++||||+++++.++.+++.+
T Consensus 193 V~~VRysPDG~~Fat~gsDg----ki~iyDGktge~vg~l~~~~aHkGsI------falsWsPDs~~~~T~SaDkt~K 260 (603)
T KOG0318|consen 193 VNCVRYSPDGSRFATAGSDG----KIYIYDGKTGEKVGELEDSDAHKGSI------FALSWSPDSTQFLTVSADKTIK 260 (603)
T ss_pred eeeEEECCCCCeEEEecCCc----cEEEEcCCCccEEEEecCCCCccccE------EEEEECCCCceEEEecCCceEE
Confidence 67788999999999876554 355444 4565555555444555677 6899999999999998877654
No 105
>PRK03204 haloalkane dehalogenase; Provisional
Probab=99.31 E-value=6.5e-11 Score=124.26 Aligned_cols=103 Identities=17% Similarity=0.276 Sum_probs=78.1
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCc
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (789)
.|.||++||.+. ....|......|. ++|.|+++|+|| +|.+... .. ....++++.+.+..++++ .+.+
T Consensus 34 ~~~iv~lHG~~~--~~~~~~~~~~~l~-~~~~vi~~D~~G---~G~S~~~---~~-~~~~~~~~~~~~~~~~~~--~~~~ 101 (286)
T PRK03204 34 GPPILLCHGNPT--WSFLYRDIIVALR-DRFRCVAPDYLG---FGLSERP---SG-FGYQIDEHARVIGEFVDH--LGLD 101 (286)
T ss_pred CCEEEEECCCCc--cHHHHHHHHHHHh-CCcEEEEECCCC---CCCCCCC---Cc-cccCHHHHHHHHHHHHHH--hCCC
Confidence 478999999764 3456666666665 469999999998 5544321 11 123577888888888776 4567
Q ss_pred cEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 672 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 672 rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
++.++|||+||.++..++..+|++++++|+.++..
T Consensus 102 ~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~~ 136 (286)
T PRK03204 102 RYLSMGQDWGGPISMAVAVERADRVRGVVLGNTWF 136 (286)
T ss_pred CEEEEEECccHHHHHHHHHhChhheeEEEEECccc
Confidence 89999999999999999999999999999887643
No 106
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=99.31 E-value=4.4e-11 Score=110.07 Aligned_cols=159 Identities=18% Similarity=0.240 Sum_probs=112.3
Q ss_pred eeEEEEEEecCCCCCCCCCcEEEEEcCCCCC---CCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcc
Q 003886 574 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHS---VSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (789)
Q Consensus 574 ~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~---~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~ 650 (789)
..+++..- |. +....|+.|..|--|.. +....-...+..|.++||.++.+||||-++...+| +.|.-
T Consensus 14 G~le~~~~-~~---~~~~~~iAli~HPHPl~gGtm~nkvv~~la~~l~~~G~atlRfNfRgVG~S~G~f------D~GiG 83 (210)
T COG2945 14 GRLEGRYE-PA---KTPAAPIALICHPHPLFGGTMNNKVVQTLARALVKRGFATLRFNFRGVGRSQGEF------DNGIG 83 (210)
T ss_pred ccceeccC-CC---CCCCCceEEecCCCccccCccCCHHHHHHHHHHHhCCceEEeecccccccccCcc------cCCcc
Confidence 34555443 43 35678999999874432 22223334556788999999999999966655544 44566
Q ss_pred cHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCcc
Q 003886 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKG 730 (789)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (789)
+.+|..++++|+.++. -+..-..+.|+|+|+++++.++.+.|+ ....++..|.++...
T Consensus 84 E~~Da~aaldW~~~~h-p~s~~~~l~GfSFGa~Ia~~la~r~~e-~~~~is~~p~~~~~d-------------------- 141 (210)
T COG2945 84 ELEDAAAALDWLQARH-PDSASCWLAGFSFGAYIAMQLAMRRPE-ILVFISILPPINAYD-------------------- 141 (210)
T ss_pred hHHHHHHHHHHHHhhC-CCchhhhhcccchHHHHHHHHHHhccc-ccceeeccCCCCchh--------------------
Confidence 7999999999999973 122334789999999999999998875 566666666554100
Q ss_pred ccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHC
Q 003886 731 KDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHI 785 (789)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l 785 (789)
..++....+|.|+|||+.|++|.+....+..+..
T Consensus 142 ---------------------fs~l~P~P~~~lvi~g~~Ddvv~l~~~l~~~~~~ 175 (210)
T COG2945 142 ---------------------FSFLAPCPSPGLVIQGDADDVVDLVAVLKWQESI 175 (210)
T ss_pred ---------------------hhhccCCCCCceeEecChhhhhcHHHHHHhhcCC
Confidence 0134455679999999999999999988887753
No 107
>PRK06489 hypothetical protein; Provisional
Probab=99.30 E-value=1.2e-11 Score=134.26 Aligned_cols=107 Identities=21% Similarity=0.217 Sum_probs=70.6
Q ss_pred CcEEEEEcCCCCCCCchhhH--HHHHHH-------HHCCcEEEEEcCCCCCCCCchhhccCC--CCCCcccHHHHHHHH-
Q 003886 592 DPLIVVLHGGPHSVSLSSYS--KSLAFL-------SSVGYSLLIVNYRGSLGFGEEALQSLP--GKVGSQDVNDVLTAI- 659 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~--~~~~~l-------a~~Gy~V~~~d~rGs~G~G~~~~~~~~--~~~~~~~~~D~~~~i- 659 (789)
.|.||++||++.+ ...|. .....| ...+|.|+++|+|| +|.+...... .......++++.+.+
T Consensus 69 gpplvllHG~~~~--~~~~~~~~~~~~l~~~~~~l~~~~~~Via~Dl~G---hG~S~~p~~~~~~~~~~~~~~~~a~~~~ 143 (360)
T PRK06489 69 DNAVLVLHGTGGS--GKSFLSPTFAGELFGPGQPLDASKYFIILPDGIG---HGKSSKPSDGLRAAFPRYDYDDMVEAQY 143 (360)
T ss_pred CCeEEEeCCCCCc--hhhhccchhHHHhcCCCCcccccCCEEEEeCCCC---CCCCCCCCcCCCCCCCcccHHHHHHHHH
Confidence 5789999997764 22332 122222 25789999999998 5544321100 011124466666543
Q ss_pred HHHHHcCCCCCccEE-EEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 660 DHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 660 ~~l~~~~~~d~~rv~-l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
..+.++ .+.+++. |+|||+||++++.++.++|++++++|+.++.
T Consensus 144 ~~l~~~--lgi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LVLi~s~ 188 (360)
T PRK06489 144 RLVTEG--LGVKHLRLILGTSMGGMHAWMWGEKYPDFMDALMPMASQ 188 (360)
T ss_pred HHHHHh--cCCCceeEEEEECHHHHHHHHHHHhCchhhheeeeeccC
Confidence 334444 3456775 8999999999999999999999999988764
No 108
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=99.30 E-value=8.1e-11 Score=129.04 Aligned_cols=106 Identities=17% Similarity=0.301 Sum_probs=71.9
Q ss_pred CCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCc-ccHH-HHHHHHHHHHHcCC
Q 003886 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS-QDVN-DVLTAIDHVIDMGL 667 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~-~~~~-D~~~~i~~l~~~~~ 667 (789)
+..|.||++||.+.+ ...|......|++ +|.|+++|+|| +|.+.... ..... .+.. .+.+.+..+++.
T Consensus 103 ~~~p~vvllHG~~~~--~~~~~~~~~~L~~-~~~vi~~D~rG---~G~S~~~~--~~~~~~~~~~~~~~~~i~~~~~~-- 172 (402)
T PLN02894 103 EDAPTLVMVHGYGAS--QGFFFRNFDALAS-RFRVIAIDQLG---WGGSSRPD--FTCKSTEETEAWFIDSFEEWRKA-- 172 (402)
T ss_pred CCCCEEEEECCCCcc--hhHHHHHHHHHHh-CCEEEEECCCC---CCCCCCCC--cccccHHHHHHHHHHHHHHHHHH--
Confidence 356899999997653 4455556667765 59999999998 44443211 11111 1111 223333333333
Q ss_pred CCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
.+.+++.|+|||+||++++.++.++|++++++|+.+|.
T Consensus 173 l~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~ 210 (402)
T PLN02894 173 KNLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPA 210 (402)
T ss_pred cCCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCc
Confidence 35578999999999999999999999999999999875
No 109
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=99.30 E-value=3.5e-11 Score=130.16 Aligned_cols=122 Identities=9% Similarity=0.078 Sum_probs=82.0
Q ss_pred EEEEEecCCCCCCCCCcEEEEEcCCCCCCC---chhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHH
Q 003886 577 EAIFVSSSHKKDCSCDPLIVVLHGGPHSVS---LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 653 (789)
Q Consensus 577 ~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~---~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~ 653 (789)
..+.|.|.. +...+.| ||++||-..... ...+...+.+|+++||.|+++|+|| +|.+.. ..........
T Consensus 49 ~l~~~~~~~-~~~~~~p-vl~v~~~~~~~~~~d~~~~~~~~~~L~~~G~~V~~~D~~g---~g~s~~---~~~~~d~~~~ 120 (350)
T TIGR01836 49 VLYRYTPVK-DNTHKTP-LLIVYALVNRPYMLDLQEDRSLVRGLLERGQDVYLIDWGY---PDRADR---YLTLDDYING 120 (350)
T ss_pred EEEEecCCC-CcCCCCc-EEEeccccccceeccCCCCchHHHHHHHCCCeEEEEeCCC---CCHHHh---cCCHHHHHHH
Confidence 334455542 1122334 788888322111 1123457789999999999999987 333221 1111111124
Q ss_pred HHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccch
Q 003886 654 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 708 (789)
Q Consensus 654 D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~ 708 (789)
++.+++++++++ .+.+++.++|||+||.+++.++..+|++++++|+.++..++
T Consensus 121 ~~~~~v~~l~~~--~~~~~i~lvGhS~GG~i~~~~~~~~~~~v~~lv~~~~p~~~ 173 (350)
T TIGR01836 121 YIDKCVDYICRT--SKLDQISLLGICQGGTFSLCYAALYPDKIKNLVTMVTPVDF 173 (350)
T ss_pred HHHHHHHHHHHH--hCCCcccEEEECHHHHHHHHHHHhCchheeeEEEecccccc
Confidence 578889999887 35578999999999999999999999999999999987764
No 110
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=99.29 E-value=1.4e-11 Score=128.22 Aligned_cols=124 Identities=15% Similarity=0.197 Sum_probs=88.8
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC--chhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCC
Q 003886 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS--LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~--~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~ 648 (789)
.+|..+.|+++.|.+ .+.+.||++|||+.... ...+......|+++||.|+++|+|| +|.+.... ..+
T Consensus 9 ~~~~~l~g~~~~p~~----~~~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G---~G~S~~~~--~~~- 78 (274)
T TIGR03100 9 CEGETLVGVLHIPGA----SHTTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRG---MGDSEGEN--LGF- 78 (274)
T ss_pred cCCcEEEEEEEcCCC----CCCCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCC---CCCCCCCC--CCH-
Confidence 357889999999862 23467777888765322 2234456778999999999999998 55443111 111
Q ss_pred cccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
....+|+.++++++.++. -..++|+++|||+||.+++.++.. +++++++|+.+|..
T Consensus 79 ~~~~~d~~~~~~~l~~~~-~g~~~i~l~G~S~Gg~~a~~~a~~-~~~v~~lil~~p~~ 134 (274)
T TIGR03100 79 EGIDADIAAAIDAFREAA-PHLRRIVAWGLCDAASAALLYAPA-DLRVAGLVLLNPWV 134 (274)
T ss_pred HHHHHHHHHHHHHHHhhC-CCCCcEEEEEECHHHHHHHHHhhh-CCCccEEEEECCcc
Confidence 123578999999987651 124679999999999999988765 56899999999874
No 111
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.29 E-value=3.8e-11 Score=131.43 Aligned_cols=104 Identities=21% Similarity=0.368 Sum_probs=78.2
Q ss_pred CCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCC
Q 003886 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (789)
...|.||++||.+++ ...|......|.. +|.|+++|+|| +|.+... ....++.++.+.+..+++. ++
T Consensus 129 ~~~~~vl~~HG~~~~--~~~~~~~~~~l~~-~~~v~~~d~~g---~G~s~~~-----~~~~~~~~~~~~~~~~~~~--~~ 195 (371)
T PRK14875 129 GDGTPVVLIHGFGGD--LNNWLFNHAALAA-GRPVIALDLPG---HGASSKA-----VGAGSLDELAAAVLAFLDA--LG 195 (371)
T ss_pred CCCCeEEEECCCCCc--cchHHHHHHHHhc-CCEEEEEcCCC---CCCCCCC-----CCCCCHHHHHHHHHHHHHh--cC
Confidence 345789999996654 4566666666655 49999999998 4443211 1133567777777777765 56
Q ss_pred CccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 670 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
..++.++|||+||++++.++.++|++++++|+.+|..
T Consensus 196 ~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~~ 232 (371)
T PRK14875 196 IERAHLVGHSMGGAVALRLAARAPQRVASLTLIAPAG 232 (371)
T ss_pred CccEEEEeechHHHHHHHHHHhCchheeEEEEECcCC
Confidence 6789999999999999999999999999999988753
No 112
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.26 E-value=2.2e-09 Score=113.40 Aligned_cols=240 Identities=11% Similarity=0.092 Sum_probs=132.5
Q ss_pred CCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCcc-ceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003886 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSV-TFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (789)
Q Consensus 104 ~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (789)
++|||+.+..... ....++.+++.+ ++.. .+... .......|+|||+.++.....+ + .+.
T Consensus 38 ~~~dg~~l~~~~~--------~~~~v~~~d~~~--~~~~~~~~~~------~~~~~~~~~~~g~~l~~~~~~~-~--~l~ 98 (300)
T TIGR03866 38 LSKDGKLLYVCAS--------DSDTIQVIDLAT--GEVIGTLPSG------PDPELFALHPNGKILYIANEDD-N--LVT 98 (300)
T ss_pred ECCCCCEEEEEEC--------CCCeEEEEECCC--CcEEEeccCC------CCccEEEECCCCCEEEEEcCCC-C--eEE
Confidence 4689886643321 123566666532 2221 22211 2345678999999876553322 2 344
Q ss_pred EEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeC
Q 003886 183 ELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE 261 (789)
Q Consensus 183 ~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (789)
.++ ..++....+...... .++.|+|||+.+++.....
T Consensus 99 ~~d~~~~~~~~~~~~~~~~----------~~~~~~~dg~~l~~~~~~~-------------------------------- 136 (300)
T TIGR03866 99 VIDIETRKVLAEIPVGVEP----------EGMAVSPDGKIVVNTSETT-------------------------------- 136 (300)
T ss_pred EEECCCCeEEeEeeCCCCc----------ceEEECCCCCEEEEEecCC--------------------------------
Confidence 433 233322222222222 5789999999988764321
Q ss_pred CcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEe
Q 003886 262 DWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 341 (789)
Q Consensus 262 d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d 341 (789)
..+.++|..+++.... .........+.|+|||+. |++.+. ....|+++|
T Consensus 137 -----------~~~~~~d~~~~~~~~~--~~~~~~~~~~~~s~dg~~----l~~~~~--------------~~~~v~i~d 185 (300)
T TIGR03866 137 -----------NMAHFIDTKTYEIVDN--VLVDQRPRFAEFTADGKE----LWVSSE--------------IGGTVSVID 185 (300)
T ss_pred -----------CeEEEEeCCCCeEEEE--EEcCCCccEEEECCCCCE----EEEEcC--------------CCCEEEEEE
Confidence 2455677777665432 122234457899999997 766542 123688888
Q ss_pred cccccchhhhhhhhcCCCCCCCe-eecCCC-------CCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCC
Q 003886 342 VSLYKSEASELELKESSSEDLPV-VNLTES-------ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (789)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~-~~Lt~~-------~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~ 413 (789)
+ ++++. +.++.. .......+|||||+.++..... ..++++||..+
T Consensus 186 ~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~----------~~~i~v~d~~~ 238 (300)
T TIGR03866 186 V-----------------ATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP----------ANRVAVVDAKT 238 (300)
T ss_pred c-----------------CcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCC----------CCeEEEEECCC
Confidence 7 33332 333211 1123457899999986544322 23589999876
Q ss_pred CCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcE-EEec
Q 003886 414 NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL-LRIT 484 (789)
Q Consensus 414 ~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~-~~lt 484 (789)
++.... .. . . ..+..+.|+|||+.|+......+ .|.++|+.+++. .++.
T Consensus 239 ~~~~~~-------~~---~---~-------~~~~~~~~~~~g~~l~~~~~~~~--~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 239 YEVLDY-------LL---V---G-------QRVWQLAFTPDEKYLLTTNGVSN--DVSVIDVAALKVIKSIK 288 (300)
T ss_pred CcEEEE-------EE---e---C-------CCcceEEECCCCCEEEEEcCCCC--eEEEEECCCCcEEEEEE
Confidence 443210 00 0 0 02346689999998865543333 577778888885 4443
No 113
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.25 E-value=5.4e-09 Score=109.18 Aligned_cols=319 Identities=19% Similarity=0.200 Sum_probs=158.8
Q ss_pred HHHHhhcCccccce-EEEecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCC
Q 003886 85 LLQDFTNISSIDKA-WTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSP 163 (789)
Q Consensus 85 l~~~~~~~~~~~~~-~~~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SP 163 (789)
+.+.|..+|+..-. -+.-..+|-|..+.|.- .+.+++.+++.. ....++|.+. ..+....+||
T Consensus 6 lk~~~~~lPst~Rg~~~~ig~dpkgd~ilY~n----------Gksv~ir~i~~~-~~~~iYtEH~-----~~vtVAkySP 69 (603)
T KOG0318|consen 6 LKETFASLPSTERGVPIIIGGDPKGDNILYTN----------GKSVIIRNIDNP-ASVDIYTEHA-----HQVTVAKYSP 69 (603)
T ss_pred hhhhccCCCcccCCcceEeccCCCCCeEEEeC----------CCEEEEEECCCc-cceeeecccc-----ceeEEEEeCC
Confidence 44455666766532 22234568899999962 335566666322 2233455443 2355667999
Q ss_pred CCCeEEEEecCCCCCCeEEEEecCCceeEEEe-cCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC--CCccCCC
Q 003886 164 SGSKLLVVRNPENESPIQFELWSQSQLEKEFH-VPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK--PTFSLGS 240 (789)
Q Consensus 164 dG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~--~~~~~~~ 240 (789)
.|-++|-.-. ..-.+||+..+...++. .-.-..|.| ..++|++|+++|+-+.+.+..=. ..|+..
T Consensus 70 sG~yiASGD~-----sG~vRIWdtt~~~hiLKnef~v~aG~I------~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG- 137 (603)
T KOG0318|consen 70 SGFYIASGDV-----SGKVRIWDTTQKEHILKNEFQVLAGPI------KDISWDFDSKRIAAVGEGRERFGHVFLWDSG- 137 (603)
T ss_pred CceEEeecCC-----cCcEEEEeccCcceeeeeeeeeccccc------ccceeCCCCcEEEEEecCccceeEEEEecCC-
Confidence 9998885322 23567884332222221 111223334 89999999999999887653211 111111
Q ss_pred CCCCCCCcCCCCCCCcceeeCCcc-cccCCccCceEEEEEccCCceEeccCCCC--CCccceEEEeeCCCCCccEEEEEe
Q 003886 241 TKGGSSDKDCNSWKGQGDWEEDWG-ETYAGKRQPSLFVININSGEVQAVKGIPK--SLSVGQVVWAPLNEGLHQYLVFVG 317 (789)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~d~g-~~~~~~~~~~l~v~d~~~g~~~~l~~~~~--~~~~~~~~wSPDg~~~~~~l~f~~ 317 (789)
...-....+..-.....+.|.=- ...++..++.+-.+ .|.+-+.+-+.+ .--+..+.|||||+. ++-++
T Consensus 138 -~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ff---eGPPFKFk~s~r~HskFV~~VRysPDG~~----Fat~g 209 (603)
T KOG0318|consen 138 -NSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFF---EGPPFKFKSSFREHSKFVNCVRYSPDGSR----FATAG 209 (603)
T ss_pred -CccceeeccceeEeeeeccCCCceEEEeccCCCeEEEe---eCCCeeeeecccccccceeeEEECCCCCe----EEEec
Confidence 00000001100000111111000 00000001111111 111111110001 113568899999998 66665
Q ss_pred ecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeecC---CCCCccCcceecCCCCEEEEEecCC
Q 003886 318 WSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLT---ESISSAFFPRFSPDGKFLVFLSAKS 393 (789)
Q Consensus 318 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt---~~~~~~~~p~~SpDG~~la~~s~~~ 393 (789)
.+..+|++|= .+++ +-.|. .+.+.++..+||||+++++..+.+.
T Consensus 210 ---------------sDgki~iyDG-----------------ktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk 257 (603)
T KOG0318|consen 210 ---------------SDGKIYIYDG-----------------KTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADK 257 (603)
T ss_pred ---------------CCccEEEEcC-----------------CCccEEEEecCCCCccccEEEEEECCCCceEEEecCCc
Confidence 2337888885 4443 44555 4577899999999999999988765
Q ss_pred CCCCCCccccceeEEeecCCCCCCC-cccce---ee-E-----------------EeeeeccCCC---CCccccccCCCC
Q 003886 394 SVDSGAHSATDSLHRIDWPTNGNFS-SLEKI---VD-V-----------------IPVVQCAEGD---CFPGLYSSSILS 448 (789)
Q Consensus 394 ~~~~g~~~~~~~L~~~d~~~~~~~~-~t~~~---~~-v-----------------~~~~~~~~~~---~f~g~~~~~~~~ 448 (789)
.+.+||..++.... +..+. +. + +..+...... .+.| +.-++..
T Consensus 258 -----------t~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~G-HnK~ITa 325 (603)
T KOG0318|consen 258 -----------TIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISG-HNKSITA 325 (603)
T ss_pred -----------eEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecc-cccceeE
Confidence 46777776653311 11000 00 0 1111110000 0111 1234556
Q ss_pred CccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCC
Q 003886 449 NPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA 486 (789)
Q Consensus 449 ~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~ 486 (789)
+..++|+++| |+++.+| .|..++..+|..-++...
T Consensus 326 Ltv~~d~~~i-~SgsyDG--~I~~W~~~~g~~~~~~g~ 360 (603)
T KOG0318|consen 326 LTVSPDGKTI-YSGSYDG--HINSWDSGSGTSDRLAGK 360 (603)
T ss_pred EEEcCCCCEE-EeeccCc--eEEEEecCCccccccccc
Confidence 7788999766 5655555 456667777877777543
No 114
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.25 E-value=6.5e-11 Score=129.22 Aligned_cols=114 Identities=17% Similarity=0.244 Sum_probs=75.9
Q ss_pred CCcEEEEEcCCCCCCCch-----------hhHHHH---HHHHHCCcEEEEEcCCCCCC-C-Cchhhcc---CC--CCCCc
Q 003886 591 CDPLIVVLHGGPHSVSLS-----------SYSKSL---AFLSSVGYSLLIVNYRGSLG-F-GEEALQS---LP--GKVGS 649 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~-----------~~~~~~---~~la~~Gy~V~~~d~rGs~G-~-G~~~~~~---~~--~~~~~ 649 (789)
..|.||++||.+.+.... .|...+ ..|...+|.|+++|++|..| . +.+.... .+ ..+..
T Consensus 47 ~~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~Dl~G~~~~s~~~~~~~~~~~~~~~~~~~~ 126 (379)
T PRK00175 47 RSNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDTDRYFVICSNVLGGCKGSTGPSSINPDTGKPYGSDFPV 126 (379)
T ss_pred CCCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCccceEEEeccCCCCCCCCCCCCCCCCCCCCcccCCCCc
Confidence 358999999977753211 132222 13436789999999998322 1 1111000 00 01123
Q ss_pred ccHHHHHHHHHHHHHcCCCCCcc-EEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 650 QDVNDVLTAIDHVIDMGLANPSK-VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 650 ~~~~D~~~~i~~l~~~~~~d~~r-v~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
..++++.+.+..+++. ++.++ +.++|||+||++++.++.++|++++++|+.++..
T Consensus 127 ~~~~~~~~~~~~~l~~--l~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 182 (379)
T PRK00175 127 ITIRDWVRAQARLLDA--LGITRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASSA 182 (379)
T ss_pred CCHHHHHHHHHHHHHH--hCCCCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCCc
Confidence 5677888777777776 34567 4899999999999999999999999999998654
No 115
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=99.25 E-value=3e-11 Score=120.91 Aligned_cols=172 Identities=22% Similarity=0.302 Sum_probs=104.7
Q ss_pred EEEEcCCCCCCCchh-hHHHHHHHHH-CCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHc---CCCC
Q 003886 595 IVVLHGGPHSVSLSS-YSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM---GLAN 669 (789)
Q Consensus 595 vv~~HGg~~~~~~~~-~~~~~~~la~-~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~---~~~d 669 (789)
||++|||++...... .......+++ .|+.|+.+|||-++. ......++|+.++++|++++ -.+|
T Consensus 1 v~~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~~Yrl~p~-----------~~~p~~~~D~~~a~~~l~~~~~~~~~d 69 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESHWPFAARLAAERGFVVVSIDYRLAPE-----------APFPAALEDVKAAYRWLLKNADKLGID 69 (211)
T ss_dssp EEEE--STTTSCGTTTHHHHHHHHHHHHTSEEEEEE---TTT-----------SSTTHHHHHHHHHHHHHHHTHHHHTEE
T ss_pred CEEECCcccccCChHHHHHHHHHHHhhccEEEEEeecccccc-----------ccccccccccccceeeecccccccccc
Confidence 789999998754443 3345566664 999999999995432 22345589999999999987 2478
Q ss_pred CccEEEEEcCccHHHHHHHHHhCCC----ceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCCh-hhHH
Q 003886 670 PSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSV-EDLT 744 (789)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~~~~~p~----~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 744 (789)
.++|+|+|+|.||.+++.++....+ .++++++.+|+.++... ....+.....+... .+...... ....
T Consensus 70 ~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~~~~----~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 142 (211)
T PF07859_consen 70 PERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDLQDF----DGPSYDDSNENKDD---PFLPAPKIDWFWK 142 (211)
T ss_dssp EEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSSTSTS----SCHHHHHHHHHSTT---SSSBHHHHHHHHH
T ss_pred ccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccchhc----cccccccccccccc---ccccccccccccc
Confidence 9999999999999999999875322 48999999998876100 00000000000000 00000000 0001
Q ss_pred HH--------HhcCccccCCCC--CCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 745 RF--------HSKSPISHISKV--KTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 745 ~~--------~~~sp~~~~~~i--~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.+ ...+|+.. ..+ -.|++|++|+.|..+ .++..++++|++
T Consensus 143 ~~~~~~~~~~~~~sp~~~-~~~~~~Pp~~i~~g~~D~l~--~~~~~~~~~L~~ 192 (211)
T PF07859_consen 143 LYLPGSDRDDPLASPLNA-SDLKGLPPTLIIHGEDDVLV--DDSLRFAEKLKK 192 (211)
T ss_dssp HHHSTGGTTSTTTSGGGS-SCCTTCHEEEEEEETTSTTH--HHHHHHHHHHHH
T ss_pred cccccccccccccccccc-cccccCCCeeeeccccccch--HHHHHHHHHHHH
Confidence 11 13445544 122 358999999999765 688999998874
No 116
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.22 E-value=9.3e-10 Score=104.52 Aligned_cols=253 Identities=14% Similarity=0.127 Sum_probs=157.2
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCC-ceeEEEecC-CCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS-QLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~-~~~~~~~~~-~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
+.+....+.||++.||...... -.+|.+.... .+...++.. .++ ..+.|--||++++..+++...
T Consensus 41 sqVNrLeiTpdk~~LAaa~~qh---vRlyD~~S~np~Pv~t~e~h~kNV----------taVgF~~dgrWMyTgseDgt~ 107 (311)
T KOG0315|consen 41 SQVNRLEITPDKKDLAAAGNQH---VRLYDLNSNNPNPVATFEGHTKNV----------TAVGFQCDGRWMYTGSEDGTV 107 (311)
T ss_pred cceeeEEEcCCcchhhhccCCe---eEEEEccCCCCCceeEEeccCCce----------EEEEEeecCeEEEecCCCceE
Confidence 4588889999999999754332 1233333222 233444432 333 789999999999999888866
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCc-eEeccCCCC-CCccceEEEeeCCCCC
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPK-SLSVGQVVWAPLNEGL 309 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~-~~~l~~~~~-~~~~~~~~wSPDg~~~ 309 (789)
+.+.... ..-...-+..+-+......|+-+|.+++.....|++||+.... ...+ +|. +..+.+....|||+.
T Consensus 108 kIWdlR~---~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l--iPe~~~~i~sl~v~~dgsm- 181 (311)
T KOG0315|consen 108 KIWDLRS---LSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL--IPEDDTSIQSLTVMPDGSM- 181 (311)
T ss_pred EEEeccC---cccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc--CCCCCcceeeEEEcCCCcE-
Confidence 5332221 2222223334445556677777899999999999999998763 3444 454 347889999999997
Q ss_pred ccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEE
Q 003886 310 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFL 389 (789)
Q Consensus 310 ~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~ 389 (789)
++-.. .....|++++.....+ ..-....++..+.+.+..-.+|||+|+||..
T Consensus 182 ---l~a~n---------------nkG~cyvW~l~~~~~~----------s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ 233 (311)
T KOG0315|consen 182 ---LAAAN---------------NKGNCYVWRLLNHQTA----------SELEPVHKFQAHNGHILRCLLSPDVKYLATC 233 (311)
T ss_pred ---EEEec---------------CCccEEEEEccCCCcc----------ccceEhhheecccceEEEEEECCCCcEEEee
Confidence 66554 2346788877311000 0111223444567788899999999999998
Q ss_pred ecCCCCCCCCccccceeEEeecCCC--CCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCe
Q 003886 390 SAKSSVDSGAHSATDSLHRIDWPTN--GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 467 (789)
Q Consensus 390 s~~~~~~~g~~~~~~~L~~~d~~~~--~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~ 467 (789)
+.+. .+++|+.++- ..+.++... +-+-...||.||++| |+++.+..
T Consensus 234 ssdk-----------tv~iwn~~~~~kle~~l~gh~--------------------rWvWdc~FS~dg~Yl-vTassd~~ 281 (311)
T KOG0315|consen 234 SSDK-----------TVKIWNTDDFFKLELVLTGHQ--------------------RWVWDCAFSADGEYL-VTASSDHT 281 (311)
T ss_pred cCCc-----------eEEEEecCCceeeEEEeecCC--------------------ceEEeeeeccCccEE-EecCCCCc
Confidence 8765 3677776553 001111111 012355789999876 56666677
Q ss_pred EEEEEEECCCCcEEEecCCC
Q 003886 468 QVIISVNVSSGELLRITPAE 487 (789)
Q Consensus 468 ~~l~~~dl~tg~~~~lt~~~ 487 (789)
.+||. +..|+..+...++
T Consensus 282 ~rlW~--~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 282 ARLWD--LSAGKEVRQYQGH 299 (311)
T ss_pred eeecc--cccCceeeecCCc
Confidence 77774 5567665554443
No 117
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.21 E-value=2.2e-10 Score=115.90 Aligned_cols=108 Identities=17% Similarity=0.283 Sum_probs=81.9
Q ss_pred CCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCC
Q 003886 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (789)
.....+|++||.+.+ ...|..++..|+. ...|.++|..| +|.+.+....-+.... .....+.++..... ..
T Consensus 88 ~~~~plVliHGyGAg--~g~f~~Nf~~La~-~~~vyaiDllG---~G~SSRP~F~~d~~~~-e~~fvesiE~WR~~--~~ 158 (365)
T KOG4409|consen 88 ANKTPLVLIHGYGAG--LGLFFRNFDDLAK-IRNVYAIDLLG---FGRSSRPKFSIDPTTA-EKEFVESIEQWRKK--MG 158 (365)
T ss_pred cCCCcEEEEeccchh--HHHHHHhhhhhhh-cCceEEecccC---CCCCCCCCCCCCcccc-hHHHHHHHHHHHHH--cC
Confidence 455567789995553 5567777888888 69999999976 8888776665544333 33555556555443 34
Q ss_pred CccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 670 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
.+++.|+|||+|||++..+|.++|++++-+|+.+|.-
T Consensus 159 L~KmilvGHSfGGYLaa~YAlKyPerV~kLiLvsP~G 195 (365)
T KOG4409|consen 159 LEKMILVGHSFGGYLAAKYALKYPERVEKLILVSPWG 195 (365)
T ss_pred CcceeEeeccchHHHHHHHHHhChHhhceEEEecccc
Confidence 5789999999999999999999999999999999853
No 118
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=99.20 E-value=2.4e-10 Score=119.12 Aligned_cols=125 Identities=19% Similarity=0.245 Sum_probs=98.5
Q ss_pred eeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCc---hhhHHHHHHH-HHCCcEEEEEcCCCCCCCCchhhccCCCCCCc
Q 003886 574 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL---SSYSKSLAFL-SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649 (789)
Q Consensus 574 ~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~---~~~~~~~~~l-a~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~ 649 (789)
..+...+|.|......++.|+|||+|||++...+ ..|...+..+ .+.+..|+++|||-.+. +...
T Consensus 72 ~~l~vRly~P~~~~~~~~~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAPE-----------h~~P 140 (336)
T KOG1515|consen 72 TNLPVRLYRPTSSSSETKLPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLAPE-----------HPFP 140 (336)
T ss_pred CCeEEEEEcCCCCCcccCceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccCCC-----------CCCC
Confidence 4478889999865444789999999999986543 3455556666 57899999999997543 3334
Q ss_pred ccHHHHHHHHHHHHHc----CCCCCccEEEEEcCccHHHHHHHHHhC------CCceeEEEEeCCccchh
Q 003886 650 QDVNDVLTAIDHVIDM----GLANPSKVTVVGGSHGGFLTTHLIGQA------PDKFVAAAARNPLCNLA 709 (789)
Q Consensus 650 ~~~~D~~~~i~~l~~~----~~~d~~rv~l~G~S~GG~~a~~~~~~~------p~~~~a~v~~~pv~~~~ 709 (789)
..++|..+++.|+.++ ..+|.+||+|+|-|.||.+|..++.+. +..+++.|+..|++...
T Consensus 141 a~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~~~ 210 (336)
T KOG1515|consen 141 AAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQGT 210 (336)
T ss_pred ccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccCCC
Confidence 4588999999999885 348999999999999999999887652 35789999999988653
No 119
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.20 E-value=1.2e-10 Score=119.23 Aligned_cols=100 Identities=22% Similarity=0.183 Sum_probs=73.1
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCc
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (789)
.|.||++||.+.+ ...|......| .+|.|+++|+|| +|.+.... ...++++.+.+..+++. .+.+
T Consensus 2 ~p~vvllHG~~~~--~~~w~~~~~~l--~~~~vi~~D~~G---~G~S~~~~------~~~~~~~~~~l~~~l~~--~~~~ 66 (242)
T PRK11126 2 LPWLVFLHGLLGS--GQDWQPVGEAL--PDYPRLYIDLPG---HGGSAAIS------VDGFADVSRLLSQTLQS--YNIL 66 (242)
T ss_pred CCEEEEECCCCCC--hHHHHHHHHHc--CCCCEEEecCCC---CCCCCCcc------ccCHHHHHHHHHHHHHH--cCCC
Confidence 3779999997775 45777777777 369999999998 55443211 12455555555555554 3457
Q ss_pred cEEEEEcCccHHHHHHHHHhCCC-ceeEEEEeCCcc
Q 003886 672 KVTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNPLC 706 (789)
Q Consensus 672 rv~l~G~S~GG~~a~~~~~~~p~-~~~a~v~~~pv~ 706 (789)
++.++|||+||.+++.++.++|+ +++++++.++..
T Consensus 67 ~~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~~ 102 (242)
T PRK11126 67 PYWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGNP 102 (242)
T ss_pred CeEEEEECHHHHHHHHHHHhCCcccccEEEEeCCCC
Confidence 89999999999999999999865 499999887553
No 120
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=99.19 E-value=1.1e-09 Score=102.36 Aligned_cols=189 Identities=13% Similarity=0.077 Sum_probs=117.0
Q ss_pred CCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCC
Q 003886 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (789)
+...+||+.||.-...........+.+|++.||.++.+|++|.+....++. +++ +..+.+|+..+++++....
T Consensus 31 gs~e~vvlcHGfrS~Kn~~~~~~vA~~~e~~gis~fRfDF~GnGeS~gsf~---~Gn-~~~eadDL~sV~q~~s~~n--- 103 (269)
T KOG4667|consen 31 GSTEIVVLCHGFRSHKNAIIMKNVAKALEKEGISAFRFDFSGNGESEGSFY---YGN-YNTEADDLHSVIQYFSNSN--- 103 (269)
T ss_pred CCceEEEEeeccccccchHHHHHHHHHHHhcCceEEEEEecCCCCcCCccc---cCc-ccchHHHHHHHHHHhccCc---
Confidence 456899999996544322233345668999999999999999554433332 333 3455799999999987631
Q ss_pred CccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCC---cchhhhhccCccccccCCCCC---hhhH
Q 003886 670 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIP---DWCYVESYGSKGKDSFTESPS---VEDL 743 (789)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~~ 743 (789)
.---.|+|||-||.+++..+.++++ +.-+|..++-.+.......+--+ .|.....+-. .-.+-...+. .+-.
T Consensus 104 r~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRydl~~~I~eRlg~~~l~~ike~Gfid-~~~rkG~y~~rvt~eSl 181 (269)
T KOG4667|consen 104 RVVPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYDLKNGINERLGEDYLERIKEQGFID-VGPRKGKYGYRVTEESL 181 (269)
T ss_pred eEEEEEEeecCccHHHHHHHHhhcC-chheEEcccccchhcchhhhhcccHHHHHHhCCcee-cCcccCCcCceecHHHH
Confidence 1223689999999999999999877 77788888887776554322111 1111111100 0111111111 1111
Q ss_pred HHHHhcCccccCC--CCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 744 TRFHSKSPISHIS--KVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 744 ~~~~~~sp~~~~~--~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
......+....-. ..+||+|-+||..|.+||.+++.++++.+++
T Consensus 182 mdrLntd~h~aclkId~~C~VLTvhGs~D~IVPve~AkefAk~i~n 227 (269)
T KOG4667|consen 182 MDRLNTDIHEACLKIDKQCRVLTVHGSEDEIVPVEDAKEFAKIIPN 227 (269)
T ss_pred HHHHhchhhhhhcCcCccCceEEEeccCCceeechhHHHHHHhccC
Confidence 1111111111112 3469999999999999999999999988764
No 121
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.17 E-value=8.9e-08 Score=102.93 Aligned_cols=248 Identities=15% Similarity=0.090 Sum_probs=129.6
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEec--CCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHV--PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
.....++||||++|+...... +.-..|.+..++.....-.. .... ..+.++|||++|+.+...
T Consensus 36 ~~~~l~~spd~~~lyv~~~~~-~~i~~~~~~~~g~l~~~~~~~~~~~p----------~~i~~~~~g~~l~v~~~~---- 100 (330)
T PRK11028 36 QVQPMVISPDKRHLYVGVRPE-FRVLSYRIADDGALTFAAESPLPGSP----------THISTDHQGRFLFSASYN---- 100 (330)
T ss_pred CCccEEECCCCCEEEEEECCC-CcEEEEEECCCCceEEeeeecCCCCc----------eEEEECCCCCEEEEEEcC----
Confidence 455678999999886654432 33233444434433222221 2122 578999999977655321
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccC-CceE-eccCCCCCCccceEEEeeCCCCCc
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS-GEVQ-AVKGIPKSLSVGQVVWAPLNEGLH 310 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~-g~~~-~l~~~~~~~~~~~~~wSPDg~~~~ 310 (789)
...|.+++++. |... .+...+.........++|||+.
T Consensus 101 ---------------------------------------~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~-- 139 (330)
T PRK11028 101 ---------------------------------------ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRT-- 139 (330)
T ss_pred ---------------------------------------CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCE--
Confidence 25677777753 3221 1110122234556789999986
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCee-------ecCCCCCccCcceecCCC
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-------NLTESISSAFFPRFSPDG 383 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-------~Lt~~~~~~~~p~~SpDG 383 (789)
+ |+++.. ...|+++|+. ..+... .+.. .......+|+|||
T Consensus 140 --l-~v~~~~-------------~~~v~v~d~~----------------~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg 186 (330)
T PRK11028 140 --L-WVPCLK-------------EDRIRLFTLS----------------DDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQ 186 (330)
T ss_pred --E-EEeeCC-------------CCEEEEEEEC----------------CCCcccccCCCceecCC-CCCCceEEECCCC
Confidence 5 444322 2268888872 112111 1211 2235678999999
Q ss_pred CEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEE
Q 003886 384 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 463 (789)
Q Consensus 384 ~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~ 463 (789)
++|+..... ...|.+||++.+... + ..+..+...+. .+++- .....+.++|||+++|+...
T Consensus 187 ~~lyv~~~~----------~~~v~v~~~~~~~~~-~----~~~~~~~~~p~--~~~~~--~~~~~i~~~pdg~~lyv~~~ 247 (330)
T PRK11028 187 QYAYCVNEL----------NSSVDVWQLKDPHGE-I----ECVQTLDMMPA--DFSDT--RWAADIHITPDGRHLYACDR 247 (330)
T ss_pred CEEEEEecC----------CCEEEEEEEeCCCCC-E----EEEEEEecCCC--cCCCC--ccceeEEECCCCCEEEEecC
Confidence 987655432 246888888642111 0 01111111111 11110 01123568899998877643
Q ss_pred eCCeEEEEEEECCCCcEEEec--CCCCCceeEEeeecCCEEEEEEeCCC
Q 003886 464 WGSSQVIISVNVSSGELLRIT--PAESNFSWSLLTLDGDNIIAVSSSPV 510 (789)
Q Consensus 464 ~~~~~~l~~~dl~tg~~~~lt--~~~~~~~~~~~s~dg~~l~~~~ss~~ 510 (789)
..+...+|.++.+++..+.+. ..........+++||++|+.+.....
T Consensus 248 ~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~ 296 (330)
T PRK11028 248 TASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSH 296 (330)
T ss_pred CCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCC
Confidence 445666777765554433221 11111223578899998887764333
No 122
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.17 E-value=1.7e-08 Score=108.40 Aligned_cols=256 Identities=9% Similarity=0.066 Sum_probs=135.8
Q ss_pred cCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003886 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (789)
Q Consensus 103 ~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (789)
..+|||+.+... .. ....+..++++. .+....+...+.+ +.....+++|||++|+.....+ +.-.+|
T Consensus 41 ~~spd~~~lyv~-~~-------~~~~i~~~~~~~-~g~l~~~~~~~~~---~~p~~i~~~~~g~~l~v~~~~~-~~v~v~ 107 (330)
T PRK11028 41 VISPDKRHLYVG-VR-------PEFRVLSYRIAD-DGALTFAAESPLP---GSPTHISTDHQGRFLFSASYNA-NCVSVS 107 (330)
T ss_pred EECCCCCEEEEE-EC-------CCCcEEEEEECC-CCceEEeeeecCC---CCceEEEECCCCCEEEEEEcCC-CeEEEE
Confidence 357999877443 22 123455555532 2222111111111 2356788999999987665432 322333
Q ss_pred EEecCCceeEEEec-C--CCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCccee
Q 003886 183 ELWSQSQLEKEFHV-P--QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 259 (789)
Q Consensus 183 ~i~~~~~~~~~~~~-~--~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (789)
.+..++........ . ... ..+.++|||++|+....
T Consensus 108 ~~~~~g~~~~~~~~~~~~~~~----------~~~~~~p~g~~l~v~~~-------------------------------- 145 (330)
T PRK11028 108 PLDKDGIPVAPIQIIEGLEGC----------HSANIDPDNRTLWVPCL-------------------------------- 145 (330)
T ss_pred EECCCCCCCCceeeccCCCcc----------cEeEeCCCCCEEEEeeC--------------------------------
Confidence 33323322222211 1 122 46789999988765422
Q ss_pred eCCcccccCCccCceEEEEEccC-CceEecc----CCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCC
Q 003886 260 EEDWGETYAGKRQPSLFVININS-GEVQAVK----GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRP 334 (789)
Q Consensus 260 ~~d~g~~~~~~~~~~l~v~d~~~-g~~~~l~----~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~ 334 (789)
....|.++|+++ |.+.... ..+.......++|+|||+. +|++++..
T Consensus 146 -----------~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~-----lyv~~~~~------------- 196 (330)
T PRK11028 146 -----------KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQY-----AYCVNELN------------- 196 (330)
T ss_pred -----------CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCE-----EEEEecCC-------------
Confidence 236788999876 3332110 0122334567899999995 55654322
Q ss_pred cceEEEecccccchhhhhhhhcCCCCCCCee---ecC---CC---CCccCcceecCCCCEEEEEecCCCCCCCCccccce
Q 003886 335 CALYAVRVSLYKSEASELELKESSSEDLPVV---NLT---ES---ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDS 405 (789)
Q Consensus 335 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~Lt---~~---~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~ 405 (789)
..|.++++.. .+++.+ .+. .. ........++|||++|+. +++. ...
T Consensus 197 ~~v~v~~~~~---------------~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv-~~~~---------~~~ 251 (330)
T PRK11028 197 SSVDVWQLKD---------------PHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYA-CDRT---------ASL 251 (330)
T ss_pred CEEEEEEEeC---------------CCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEE-ecCC---------CCe
Confidence 2566666620 122221 111 10 111224678999998654 4432 236
Q ss_pred eEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEe
Q 003886 406 LHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 483 (789)
Q Consensus 406 L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~l 483 (789)
|.+++++..+... .++..... +. ....+.++|||++||++....+...+|.+|..+|.++.+
T Consensus 252 I~v~~i~~~~~~~------~~~~~~~~---~~-------~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~ 313 (330)
T PRK11028 252 ISVFSVSEDGSVL------SFEGHQPT---ET-------QPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTEL 313 (330)
T ss_pred EEEEEEeCCCCeE------EEeEEEec---cc-------cCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEc
Confidence 7788876543211 11111110 01 123668999999998876657788899888878877655
No 123
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.16 E-value=1.8e-08 Score=108.58 Aligned_cols=269 Identities=15% Similarity=0.223 Sum_probs=145.5
Q ss_pred CCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 003886 105 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 184 (789)
Q Consensus 105 spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i 184 (789)
+|+++++ |+..... .....+..+.+..+.++...+...+ +........+.+|||++|+.....+ +.-.++.+
T Consensus 45 ~~~~~~L-Y~~~e~~----~~~g~v~~~~i~~~~g~L~~~~~~~--~~g~~p~~i~~~~~g~~l~vany~~-g~v~v~~l 116 (345)
T PF10282_consen 45 SPDGRRL-YVVNEGS----GDSGGVSSYRIDPDTGTLTLLNSVP--SGGSSPCHIAVDPDGRFLYVANYGG-GSVSVFPL 116 (345)
T ss_dssp -TTSSEE-EEEETTS----STTTEEEEEEEETTTTEEEEEEEEE--ESSSCEEEEEECTTSSEEEEEETTT-TEEEEEEE
T ss_pred EeCCCEE-EEEEccc----cCCCCEEEEEECCCcceeEEeeeec--cCCCCcEEEEEecCCCEEEEEEccC-CeEEEEEc
Confidence 5788666 6654421 1344666666655534333332111 1113456788999999997665443 54455666
Q ss_pred ecCCceeEEEecCCC-cccccc---CCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceee
Q 003886 185 WSQSQLEKEFHVPQT-VHGSVY---ADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 260 (789)
Q Consensus 185 ~~~~~~~~~~~~~~~-~~g~v~---~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (789)
...|........... -+|..- ....-..+.++|||++|+.. ..
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~-dl-------------------------------- 163 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP-DL-------------------------------- 163 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE-ET--------------------------------
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE-ec--------------------------------
Confidence 655665554332100 000000 00012478999999987543 32
Q ss_pred CCcccccCCccCceEEEEEccCCc--eEecc--CCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcc
Q 003886 261 EDWGETYAGKRQPSLFVININSGE--VQAVK--GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCA 336 (789)
Q Consensus 261 ~d~g~~~~~~~~~~l~v~d~~~g~--~~~l~--~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~ 336 (789)
+...|++++++.+. +.... ..+.......++|+|||+. +|+.++.. ..
T Consensus 164 ----------G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~-----~Yv~~e~s-------------~~ 215 (345)
T PF10282_consen 164 ----------GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKY-----AYVVNELS-------------NT 215 (345)
T ss_dssp ----------TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSE-----EEEEETTT-------------TE
T ss_pred ----------CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCE-----EEEecCCC-------------Cc
Confidence 22456776665543 43311 1355556789999999985 66664433 24
Q ss_pred eEEEecccccchhhhhhhhcCCCCCCCeee------cCCC---CCccCcceecCCCCEEEEEecCCCCCCCCccccceeE
Q 003886 337 LYAVRVSLYKSEASELELKESSSEDLPVVN------LTES---ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLH 407 (789)
Q Consensus 337 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~------Lt~~---~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~ 407 (789)
|..+++.. ..+..+. +... .......++||||++| |++++. .+.|.
T Consensus 216 v~v~~~~~---------------~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~l-yvsnr~---------~~sI~ 270 (345)
T PF10282_consen 216 VSVFDYDP---------------SDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFL-YVSNRG---------SNSIS 270 (345)
T ss_dssp EEEEEEET---------------TTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEE-EEEECT---------TTEEE
T ss_pred EEEEeecc---------------cCCceeEEEEeeeccccccccCCceeEEEecCCCEE-EEEecc---------CCEEE
Confidence 55555520 1222211 1111 1135678899999976 566664 34677
Q ss_pred EeecCC--CCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEec
Q 003886 408 RIDWPT--NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 484 (789)
Q Consensus 408 ~~d~~~--~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt 484 (789)
+++++. +... .+..+.. ...+| ..+.++|||++|++.....+...+|.+|.++|.++.+.
T Consensus 271 vf~~d~~~g~l~--------~~~~~~~--~G~~P-------r~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 271 VFDLDPATGTLT--------LVQTVPT--GGKFP-------RHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EEEECTTTTTEE--------EEEEEEE--SSSSE-------EEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEecCCCceE--------EEEEEeC--CCCCc-------cEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 777743 2221 1111111 12222 36678999999988777778899999999999987764
No 124
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=99.16 E-value=8.5e-10 Score=119.21 Aligned_cols=107 Identities=23% Similarity=0.332 Sum_probs=79.8
Q ss_pred CCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCC
Q 003886 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (789)
..|.||++||.+.+ ...|......|++ +|.|+++|++| +|.+..... .......++++.+.+..++++ +..
T Consensus 126 ~~~~ivllHG~~~~--~~~w~~~~~~L~~-~~~Via~DlpG---~G~S~~p~~-~~~~~ys~~~~a~~l~~~i~~--l~~ 196 (383)
T PLN03084 126 NNPPVLLIHGFPSQ--AYSYRKVLPVLSK-NYHAIAFDWLG---FGFSDKPQP-GYGFNYTLDEYVSSLESLIDE--LKS 196 (383)
T ss_pred CCCeEEEECCCCCC--HHHHHHHHHHHhc-CCEEEEECCCC---CCCCCCCcc-cccccCCHHHHHHHHHHHHHH--hCC
Confidence 35789999997764 5577777777764 79999999998 565432211 011134566777766666665 345
Q ss_pred ccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
+++.|+|||+||.+++.++.++|++++++|+.+|..
T Consensus 197 ~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~ 232 (383)
T PLN03084 197 DKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPL 232 (383)
T ss_pred CCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCC
Confidence 689999999999999999999999999999999864
No 125
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.16 E-value=2.2e-09 Score=103.73 Aligned_cols=267 Identities=16% Similarity=0.169 Sum_probs=157.9
Q ss_pred ceeEEEEEEeecCCCC----ccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEec-C
Q 003886 125 RKKFMLSTVISKENEN----SVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHV-P 197 (789)
Q Consensus 125 ~~~~l~~~~~~~~~~~----~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~-~ 197 (789)
+.+.+..+.+..+..+ .++++.+. ..+...+.|+||++.+-.+.+. ...+| .+|+..+.+.. .
T Consensus 36 rDk~ii~W~L~~dd~~~G~~~r~~~GHs-----H~v~dv~~s~dg~~alS~swD~-----~lrlWDl~~g~~t~~f~GH~ 105 (315)
T KOG0279|consen 36 RDKTIIVWKLTSDDIKYGVPVRRLTGHS-----HFVSDVVLSSDGNFALSASWDG-----TLRLWDLATGESTRRFVGHT 105 (315)
T ss_pred cceEEEEEEeccCccccCceeeeeeccc-----eEecceEEccCCceEEeccccc-----eEEEEEecCCcEEEEEEecC
Confidence 3445566666444332 24454433 2477889999999987665543 67778 45565555543 4
Q ss_pred CCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCC-CCCCCcceeeCCccccc--CCccCce
Q 003886 198 QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDC-NSWKGQGDWEEDWGETY--AGKRQPS 274 (789)
Q Consensus 198 ~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~g~~~--~~~~~~~ 274 (789)
.++ .++++|||.++|+..+.+++.. .|+....-.-....+. ..|+....|+|.-.+.+ ...-+..
T Consensus 106 ~dV----------lsva~s~dn~qivSGSrDkTik--lwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dkt 173 (315)
T KOG0279|consen 106 KDV----------LSVAFSTDNRQIVSGSRDKTIK--LWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKT 173 (315)
T ss_pred Cce----------EEEEecCCCceeecCCCcceee--eeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCce
Confidence 444 7999999999999888776543 3432111000111122 67888888888743322 2334678
Q ss_pred EEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhh
Q 003886 275 LFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELEL 354 (789)
Q Consensus 275 l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 354 (789)
+.+||+.+-+++.-- ......+..++.||||.. +++.+ ..+.++++|+.
T Consensus 174 vKvWnl~~~~l~~~~-~gh~~~v~t~~vSpDGsl----casGg---------------kdg~~~LwdL~----------- 222 (315)
T KOG0279|consen 174 VKVWNLRNCQLRTTF-IGHSGYVNTVTVSPDGSL----CASGG---------------KDGEAMLWDLN----------- 222 (315)
T ss_pred EEEEccCCcchhhcc-ccccccEEEEEECCCCCE----EecCC---------------CCceEEEEEcc-----------
Confidence 999999887776551 223447789999999997 77654 34578899983
Q ss_pred hcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccC
Q 003886 355 KESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAE 434 (789)
Q Consensus 355 ~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~ 434 (789)
++..+..| +....+.+..|||.--+|+-... ..|.+||++++....- ...+.+-+-..
T Consensus 223 -----~~k~lysl-~a~~~v~sl~fspnrywL~~at~------------~sIkIwdl~~~~~v~~-l~~d~~g~s~~--- 280 (315)
T KOG0279|consen 223 -----EGKNLYSL-EAFDIVNSLCFSPNRYWLCAATA------------TSIKIWDLESKAVVEE-LKLDGIGPSSK--- 280 (315)
T ss_pred -----CCceeEec-cCCCeEeeEEecCCceeEeeccC------------CceEEEeccchhhhhh-ccccccccccc---
Confidence 33333333 33456888999998655543332 2489999988654311 01100000000
Q ss_pred CCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003886 435 GDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (789)
Q Consensus 435 ~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~ 473 (789)
-.+.+| ..++|++||.+| |....++..++|.+
T Consensus 281 ---~~~~~c---lslaws~dG~tL-f~g~td~~irv~qv 312 (315)
T KOG0279|consen 281 ---AGDPIC---LSLAWSADGQTL-FAGYTDNVIRVWQV 312 (315)
T ss_pred ---cCCcEE---EEEEEcCCCcEE-EeeecCCcEEEEEe
Confidence 000111 356899999988 45555555566654
No 126
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=99.15 E-value=4.4e-10 Score=112.65 Aligned_cols=160 Identities=19% Similarity=0.216 Sum_probs=88.8
Q ss_pred CCCCCcEEEEEcCCCCCCCchhhHHHHH-HHHHCCcEEEEEcCCC---CCCCCc---hhhccCCCCC-CcccHHHHH---
Q 003886 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRG---SLGFGE---EALQSLPGKV-GSQDVNDVL--- 656 (789)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~-~la~~Gy~V~~~d~rG---s~G~G~---~~~~~~~~~~-~~~~~~D~~--- 656 (789)
..++.|+||++||.+.+ ...+..... .+......+++++-+- ....|. .|........ ...+.+++.
T Consensus 10 ~~~~~~lvi~LHG~G~~--~~~~~~~~~~~~~~~~~~~i~p~ap~~~~~~~~g~~~~~Wf~~~~~~~~~~~~~~~i~~s~ 87 (216)
T PF02230_consen 10 KGKAKPLVILLHGYGDS--EDLFALLAELNLALPNTRFISPRAPSRPVTVPGGYRMPAWFDIYDFDPEGPEDEAGIEESA 87 (216)
T ss_dssp SST-SEEEEEE--TTS---HHHHHHHHHHHTCSTTEEEEEE---EEE-GGGTT-EEE-SS-BSCSSSSSEB-HHHHHHHH
T ss_pred CCCCceEEEEECCCCCC--cchhHHHHhhcccCCceEEEeccCCCCCcccccccCCCceeeccCCCcchhhhHHHHHHHH
Confidence 46789999999996553 333332222 2234567788776531 011122 3332211111 112233333
Q ss_pred ----HHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCcccc
Q 003886 657 ----TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKD 732 (789)
Q Consensus 657 ----~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (789)
+.++..++.+ ++.+||.++|+|.||.+++.++.++|+.+.++|+.+|.......
T Consensus 88 ~~l~~li~~~~~~~-i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~--------------------- 145 (216)
T PF02230_consen 88 ERLDELIDEEVAYG-IDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESE--------------------- 145 (216)
T ss_dssp HHHHHHHHHHHHTT---GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCC---------------------
T ss_pred HHHHHHHHHHHHcC-CChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeecccccccc---------------------
Confidence 3333333334 89999999999999999999999999999999999986521100
Q ss_pred ccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCCC
Q 003886 733 SFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPFS 788 (789)
Q Consensus 733 ~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~~ 788 (789)
. .. . ..... ++|++++||.+|++||.+.+++.++.|++.
T Consensus 146 ------~-~~-------~-~~~~~--~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~ 184 (216)
T PF02230_consen 146 ------L-ED-------R-PEALA--KTPILIIHGDEDPVVPFEWAEKTAEFLKAA 184 (216)
T ss_dssp ------C-HC-------C-HCCCC--TS-EEEEEETT-SSSTHHHHHHHHHHHHCT
T ss_pred ------c-cc-------c-ccccC--CCcEEEEecCCCCcccHHHHHHHHHHHHhc
Confidence 0 00 0 00111 689999999999999999999999988653
No 127
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.14 E-value=8e-09 Score=100.54 Aligned_cols=263 Identities=13% Similarity=0.140 Sum_probs=162.8
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecC--CceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQ--SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
+-+....||+|+++|+-.+..+ .+.||+. ......+.++. .|+...++||.|+.||...-+..-
T Consensus 56 ~Ki~~~~ws~Dsr~ivSaSqDG-----klIvWDs~TtnK~haipl~s---------~WVMtCA~sPSg~~VAcGGLdN~C 121 (343)
T KOG0286|consen 56 NKIYAMDWSTDSRRIVSASQDG-----KLIVWDSFTTNKVHAIPLPS---------SWVMTCAYSPSGNFVACGGLDNKC 121 (343)
T ss_pred cceeeeEecCCcCeEEeeccCC-----eEEEEEcccccceeEEecCc---------eeEEEEEECCCCCeEEecCcCcee
Confidence 4588899999999999887765 6778853 33333333322 255899999999999986544311
Q ss_pred CCCCccCCCC------CCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCC-CccceEEEee
Q 003886 232 SKPTFSLGST------KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-LSVGQVVWAP 304 (789)
Q Consensus 232 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~-~~~~~~~wSP 304 (789)
..+..... +..+....+..|...-.|.+| +..+++.++....+||+++|+.... ..++ ..+-.+..+|
T Consensus 122 --siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~--f~GH~gDV~slsl~p 196 (343)
T KOG0286|consen 122 --SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQV--FHGHTGDVMSLSLSP 196 (343)
T ss_pred --EEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEE--ecCCcccEEEEecCC
Confidence 11111111 111223445555555556665 5677788899999999999987665 3333 3567889999
Q ss_pred -CCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCC
Q 003886 305 -LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDG 383 (789)
Q Consensus 305 -Dg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG 383 (789)
|++. .+-.+- +..-+++|++ ++.-.+....+...+...+|-|+|
T Consensus 197 ~~~nt----FvSg~c---------------D~~aklWD~R----------------~~~c~qtF~ghesDINsv~ffP~G 241 (343)
T KOG0286|consen 197 SDGNT----FVSGGC---------------DKSAKLWDVR----------------SGQCVQTFEGHESDINSVRFFPSG 241 (343)
T ss_pred CCCCe----EEeccc---------------ccceeeeecc----------------CcceeEeecccccccceEEEccCC
Confidence 8887 444331 1245566762 344455667778889999999999
Q ss_pred CEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEE
Q 003886 384 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 463 (789)
Q Consensus 384 ~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~ 463 (789)
..++..+.+. ...++|+..+....+-..... ..++.++.||..|+ |+|...
T Consensus 242 ~afatGSDD~-----------tcRlyDlRaD~~~a~ys~~~~-----------------~~gitSv~FS~SGR-lLfagy 292 (343)
T KOG0286|consen 242 DAFATGSDDA-----------TCRLYDLRADQELAVYSHDSI-----------------ICGITSVAFSKSGR-LLFAGY 292 (343)
T ss_pred CeeeecCCCc-----------eeEEEeecCCcEEeeeccCcc-----------------cCCceeEEEccccc-EEEeee
Confidence 9776655442 356678777554322211100 02356788999998 556665
Q ss_pred eCCeEEEEEEECCCCcEEEecCCC-CCceeEEeeecCCE
Q 003886 464 WGSSQVIISVNVSSGELLRITPAE-SNFSWSLLTLDGDN 501 (789)
Q Consensus 464 ~~~~~~l~~~dl~tg~~~~lt~~~-~~~~~~~~s~dg~~ 501 (789)
.+.+.++ +|.-.++..-+..++ ..++-..++|||--
T Consensus 293 ~d~~c~v--WDtlk~e~vg~L~GHeNRvScl~~s~DG~a 329 (343)
T KOG0286|consen 293 DDFTCNV--WDTLKGERVGVLAGHENRVSCLGVSPDGMA 329 (343)
T ss_pred cCCceeE--eeccccceEEEeeccCCeeEEEEECCCCcE
Confidence 5554444 465456555444443 34555667777653
No 128
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.13 E-value=6.1e-08 Score=97.94 Aligned_cols=271 Identities=12% Similarity=0.173 Sum_probs=152.3
Q ss_pred CCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 003886 105 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 184 (789)
Q Consensus 105 spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i 184 (789)
+|+++++ |+....+ ....+-.+.++...++...+.... +........+.++||++|+...... +.-.++.+
T Consensus 48 ~~~~~~L-Y~v~~~~-----~~ggvaay~iD~~~G~Lt~ln~~~--~~g~~p~yvsvd~~g~~vf~AnY~~-g~v~v~p~ 118 (346)
T COG2706 48 NPDQRHL-YVVNEPG-----EEGGVAAYRIDPDDGRLTFLNRQT--LPGSPPCYVSVDEDGRFVFVANYHS-GSVSVYPL 118 (346)
T ss_pred CCCCCEE-EEEEecC-----CcCcEEEEEEcCCCCeEEEeeccc--cCCCCCeEEEECCCCCEEEEEEccC-ceEEEEEc
Confidence 4666655 5544332 233455555554444332221111 1112246789999999987665543 44445555
Q ss_pred ecCCceeEEEecCCCccccccCC-C--cccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeC
Q 003886 185 WSQSQLEKEFHVPQTVHGSVYAD-G--WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE 261 (789)
Q Consensus 185 ~~~~~~~~~~~~~~~~~g~v~~d-~--~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (789)
..+|.....++..........+. + -.....+.||++.|+...-
T Consensus 119 ~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL---------------------------------- 164 (346)
T COG2706 119 QADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL---------------------------------- 164 (346)
T ss_pred ccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec----------------------------------
Confidence 45565544433211110000000 0 0146779999987765421
Q ss_pred CcccccCCccCceEEEEEccCCceEecc--CCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEE
Q 003886 262 DWGETYAGKRQPSLFVININSGEVQAVK--GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 339 (789)
Q Consensus 262 d~g~~~~~~~~~~l~v~d~~~g~~~~l~--~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~ 339 (789)
+...|++++++.|+..... ..........++|+|+|| ++|+.++-. ....+|.
T Consensus 165 ---------G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k-----~aY~v~EL~-----------stV~v~~ 219 (346)
T COG2706 165 ---------GTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGK-----YAYLVNELN-----------STVDVLE 219 (346)
T ss_pred ---------CCceEEEEEcccCccccccccccCCCCCcceEEEcCCCc-----EEEEEeccC-----------CEEEEEE
Confidence 2356888888888765542 123345677999999999 577664322 1224555
Q ss_pred EecccccchhhhhhhhcCCCCCCCeeecCC---------CCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEee
Q 003886 340 VRVSLYKSEASELELKESSSEDLPVVNLTE---------SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID 410 (789)
Q Consensus 340 ~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~---------~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d 410 (789)
++- ..++.++|.. +.........||||++| |.+++. .+.|.++.
T Consensus 220 y~~-----------------~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFL-YasNRg---------~dsI~~f~ 272 (346)
T COG2706 220 YNP-----------------AVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFL-YASNRG---------HDSIAVFS 272 (346)
T ss_pred EcC-----------------CCceEEEeeeeccCccccCCCCceeEEEECCCCCEE-EEecCC---------CCeEEEEE
Confidence 553 3344444321 23346778999999976 678774 23565554
Q ss_pred cCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecC
Q 003886 411 WPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 485 (789)
Q Consensus 411 ~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~ 485 (789)
+.....+ + .++. ..+.++.+| ..+.++++|+.|++.........+|.+|..||++..+..
T Consensus 273 V~~~~g~-L-----~~~~--~~~teg~~P-------R~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 273 VDPDGGK-L-----ELVG--ITPTEGQFP-------RDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred EcCCCCE-E-----EEEE--EeccCCcCC-------ccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEeccc
Confidence 4332211 0 0111 112222333 466789999999888777788999999999999988754
No 129
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.12 E-value=2.3e-09 Score=119.23 Aligned_cols=123 Identities=14% Similarity=0.222 Sum_probs=81.3
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhh---HHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccH
Q 003886 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY---SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652 (789)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~---~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~ 652 (789)
++-+.|.|.. +....+.||++||.......... ...+.+|+++||.|+++|+|| +|.+... ..+.....
T Consensus 174 ~eLi~Y~P~t--~~~~~~PlLiVp~~i~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrg---pg~s~~~---~~~ddY~~ 245 (532)
T TIGR01838 174 FQLIQYEPTT--ETVHKTPLLIVPPWINKYYILDLRPQNSLVRWLVEQGHTVFVISWRN---PDASQAD---KTFDDYIR 245 (532)
T ss_pred EEEEEeCCCC--CcCCCCcEEEECcccccceeeecccchHHHHHHHHCCcEEEEEECCC---CCccccc---CChhhhHH
Confidence 4555666752 22244567788995443222211 246789999999999999997 3332211 11222334
Q ss_pred HHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHH----HHHHhC-CCceeEEEEeCCccch
Q 003886 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTT----HLIGQA-PDKFVAAAARNPLCNL 708 (789)
Q Consensus 653 ~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~----~~~~~~-p~~~~a~v~~~pv~~~ 708 (789)
+++.++++++.+. .+.+++.++|||+||.+++ .++..+ +++++++++.+..+|+
T Consensus 246 ~~i~~al~~v~~~--~g~~kv~lvG~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~Df 304 (532)
T TIGR01838 246 DGVIAALEVVEAI--TGEKQVNCVGYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLLDF 304 (532)
T ss_pred HHHHHHHHHHHHh--cCCCCeEEEEECcCcHHHHHHHHHHHHhCCCCccceEEEEecCcCC
Confidence 5688899998875 4678999999999999852 234444 7789999988876664
No 130
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.12 E-value=2.2e-09 Score=109.34 Aligned_cols=268 Identities=12% Similarity=0.056 Sum_probs=166.2
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCC--CCEEEEEeecCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSD--ETLIAYVAEEPS 230 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpD--g~~la~~~~~~~ 230 (789)
.+....||+||+.||..+-.+ ...+|. +++..+.+.. ..+.+ .++.|+|. +..||..+.+..
T Consensus 177 Pis~~~fS~ds~~laT~swsG-----~~kvW~~~~~~~~~~l~g---H~~~v------~~~~fhP~~~~~~lat~s~Dgt 242 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWSG-----LVKVWSVPQCNLLQTLRG---HTSRV------GAAVFHPVDSDLNLATASADGT 242 (459)
T ss_pred cceeeEeecCCCeEEEeecCC-----ceeEeecCCcceeEEEec---cccce------eeEEEccCCCccceeeeccCCc
Confidence 367788999999999877653 456662 2333333322 22222 78999997 678998888876
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCc
Q 003886 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 310 (789)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (789)
.. .|.............+..-+....|.|++.-..+..-+..=-+||+.++....+. -..+..+.+.+|.|||.-
T Consensus 243 vk--lw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q-EGHs~~v~~iaf~~DGSL-- 317 (459)
T KOG0272|consen 243 VK--LWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ-EGHSKGVFSIAFQPDGSL-- 317 (459)
T ss_pred ee--eeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhh-cccccccceeEecCCCce--
Confidence 54 3332222222333444444556678887654444444555667999988655442 122347889999999984
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEe
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 390 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s 390 (789)
++-.+.+. -=.++|+. .+..+-.|..+...+....|||+|-.||..+
T Consensus 318 --~~tGGlD~---------------~~RvWDlR----------------tgr~im~L~gH~k~I~~V~fsPNGy~lATgs 364 (459)
T KOG0272|consen 318 --AATGGLDS---------------LGRVWDLR----------------TGRCIMFLAGHIKEILSVAFSPNGYHLATGS 364 (459)
T ss_pred --eeccCccc---------------hhheeecc----------------cCcEEEEecccccceeeEeECCCceEEeecC
Confidence 44333211 12244552 3344557777888899999999999998877
Q ss_pred cCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEE
Q 003886 391 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 470 (789)
Q Consensus 391 ~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l 470 (789)
.+. .+.+||+.......+.....+ -+..+.|+|++...++++..++..+|
T Consensus 365 ~Dn-----------t~kVWDLR~r~~ly~ipAH~n-------------------lVS~Vk~~p~~g~fL~TasyD~t~ki 414 (459)
T KOG0272|consen 365 SDN-----------TCKVWDLRMRSELYTIPAHSN-------------------LVSQVKYSPQEGYFLVTASYDNTVKI 414 (459)
T ss_pred CCC-----------cEEEeeecccccceecccccc-------------------hhhheEecccCCeEEEEcccCcceee
Confidence 553 578888876444322222222 24577899977778888888888999
Q ss_pred EEEECCCCcEEEecCCC-CCceeEEeeecCCEEEEEE
Q 003886 471 ISVNVSSGELLRITPAE-SNFSWSLLTLDGDNIIAVS 506 (789)
Q Consensus 471 ~~~dl~tg~~~~lt~~~-~~~~~~~~s~dg~~l~~~~ 506 (789)
|.- .+....+...++ +.+-...+++|++.++...
T Consensus 415 Ws~--~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s 449 (459)
T KOG0272|consen 415 WST--RTWSPLKSLAGHEGKVISLDISPDSQAIATSS 449 (459)
T ss_pred ecC--CCcccchhhcCCccceEEEEeccCCceEEEec
Confidence 863 355544444443 3333346777877665443
No 131
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.12 E-value=1.4e-08 Score=99.21 Aligned_cols=284 Identities=14% Similarity=0.151 Sum_probs=174.5
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
+.+....|+|||..+|.. +..+.+.+|. .+..+..-. ..+..|+| .++.|++|+..|+..+.++...
T Consensus 48 geI~~~~F~P~gs~~aSg-----G~Dr~I~LWnv~gdceN~~~-lkgHsgAV------M~l~~~~d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 48 GEIYTIKFHPDGSCFASG-----GSDRAIVLWNVYGDCENFWV-LKGHSGAV------MELHGMRDGSHILSCGTDKTVR 115 (338)
T ss_pred ceEEEEEECCCCCeEeec-----CCcceEEEEeccccccceee-ecccccee------EeeeeccCCCEEEEecCCceEE
Confidence 568889999999999864 3445677883 444333322 33556666 8999999999999988877544
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCccccc--CCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCc
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY--AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 310 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~--~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (789)
.|+...++...+.+.+........ ..+-|.++ ++..+.++.+||..+.+..++ .........+.|.-++..
T Consensus 116 --~wD~~tG~~~rk~k~h~~~vNs~~-p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t--~~~kyqltAv~f~d~s~q-- 188 (338)
T KOG0265|consen 116 --GWDAETGKRIRKHKGHTSFVNSLD-PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT--FENKYQLTAVGFKDTSDQ-- 188 (338)
T ss_pred --EEecccceeeehhccccceeeecC-ccccCCeEEEecCCCceEEEEeecccchhhc--cccceeEEEEEecccccc--
Confidence 345444444444443333322111 11112221 233467899999987766655 455667889999999998
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEe
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 390 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s 390 (789)
+...+ -+.+|-.+|+. ...-...|+.+...+.....||+|..|.-.+
T Consensus 189 --v~sgg---------------Idn~ikvWd~r----------------~~d~~~~lsGh~DtIt~lsls~~gs~llsns 235 (338)
T KOG0265|consen 189 --VISGG---------------IDNDIKVWDLR----------------KNDGLYTLSGHADTITGLSLSRYGSFLLSNS 235 (338)
T ss_pred --eeecc---------------ccCceeeeccc----------------cCcceEEeecccCceeeEEeccCCCcccccc
Confidence 55444 22367777773 3334567777788899999999999998777
Q ss_pred cCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeee-ccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEE
Q 003886 391 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ-CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 469 (789)
Q Consensus 391 ~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~-~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~ 469 (789)
++. .+.+||...-.. ... .+.+.. .... ++-.+...+|||+++.+-+- ...+.
T Consensus 236 Md~-----------tvrvwd~rp~~p-----~~R-~v~if~g~~hn------feknlL~cswsp~~~~i~ag---s~dr~ 289 (338)
T KOG0265|consen 236 MDN-----------TVRVWDVRPFAP-----SQR-CVKIFQGHIHN------FEKNLLKCSWSPNGTKITAG---SADRF 289 (338)
T ss_pred ccc-----------eEEEEEecccCC-----CCc-eEEEeecchhh------hhhhcceeeccCCCCccccc---cccce
Confidence 664 577887643111 111 111111 1111 22245677899999966543 34567
Q ss_pred EEEEECCCCcEEEecCCC-CCceeEEeeecCCEEEEEEeCCCCCCeEEEEe
Q 003886 470 IISVNVSSGELLRITPAE-SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 519 (789)
Q Consensus 470 l~~~dl~tg~~~~lt~~~-~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~ 519 (789)
+|++|..+..+....+++ +.+....|.|... |+.++++..+ ||+..
T Consensus 290 vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~-iils~~sdk~---i~lge 336 (338)
T KOG0265|consen 290 VYVWDTTSRRILYKLPGHYGSVNEVDFHPTEP-IILSCSSDKT---IYLGE 336 (338)
T ss_pred EEEeecccccEEEEcCCcceeEEEeeecCCCc-EEEEeccCce---eEeec
Confidence 899997665555444444 3455557777655 4555555554 66654
No 132
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.12 E-value=8.7e-10 Score=118.97 Aligned_cols=79 Identities=18% Similarity=0.219 Sum_probs=56.5
Q ss_pred HHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCcc-EEEEEcCccHHHHHHHHHhCCC
Q 003886 616 FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK-VTVVGGSHGGFLTTHLIGQAPD 694 (789)
Q Consensus 616 ~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r-v~l~G~S~GG~~a~~~~~~~p~ 694 (789)
.|...+|.|+++|+|| +|.+.. . ....++..+.+..+++. ++.++ +.|+||||||++++.++.++|+
T Consensus 94 ~L~~~~~~Vi~~Dl~G---~g~s~~----~---~~~~~~~a~dl~~ll~~--l~l~~~~~lvG~SmGG~vA~~~A~~~P~ 161 (343)
T PRK08775 94 ALDPARFRLLAFDFIG---ADGSLD----V---PIDTADQADAIALLLDA--LGIARLHAFVGYSYGALVGLQFASRHPA 161 (343)
T ss_pred ccCccccEEEEEeCCC---CCCCCC----C---CCCHHHHHHHHHHHHHH--cCCCcceEEEEECHHHHHHHHHHHHChH
Confidence 3545679999999998 444321 1 12244555555555554 34445 4799999999999999999999
Q ss_pred ceeEEEEeCCcc
Q 003886 695 KFVAAAARNPLC 706 (789)
Q Consensus 695 ~~~a~v~~~pv~ 706 (789)
+++++|+.++..
T Consensus 162 ~V~~LvLi~s~~ 173 (343)
T PRK08775 162 RVRTLVVVSGAH 173 (343)
T ss_pred hhheEEEECccc
Confidence 999999998754
No 133
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=99.11 E-value=1.8e-08 Score=111.93 Aligned_cols=274 Identities=14% Similarity=0.081 Sum_probs=157.8
Q ss_pred EEEEeCCCCCeEEEEecCCC-CCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCC
Q 003886 157 SAVVPSPSGSKLLVVRNPEN-ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (789)
Q Consensus 157 ~~~~~SPdG~~la~~~~~~~-~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~ 234 (789)
...++||||++|||..+.++ +...+++++ .+|+...-. +.... +..+.|++||+.++|...+......
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-i~~~~---------~~~~~W~~d~~~~~y~~~~~~~~~~ 196 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-IENPK---------FSSVSWSDDGKGFFYTRFDEDQRTS 196 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-EEEEE---------SEEEEECTTSSEEEEEECSTTTSS-
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-ccccc---------cceEEEeCCCCEEEEEEeCcccccc
Confidence 35789999999999865542 445566666 455332211 11111 1349999999999999776532100
Q ss_pred CccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceE--eccCCCC-CCccceEEEeeCCCCCcc
Q 003886 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ--AVKGIPK-SLSVGQVVWAPLNEGLHQ 311 (789)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~--~l~~~~~-~~~~~~~~wSPDg~~~~~ 311 (789)
.......|+.+.+.++... .+...+. ....-.+.+|+||+.
T Consensus 197 ---------------------------------~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~--- 240 (414)
T PF02897_consen 197 ---------------------------------DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRY--- 240 (414)
T ss_dssp ---------------------------------CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSE---
T ss_pred ---------------------------------cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccE---
Confidence 0112467999999887543 3321122 222447789999998
Q ss_pred EEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEec
Q 003886 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 391 (789)
Q Consensus 312 ~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~ 391 (789)
|+..+.+... .+.+|++++.... ......+.|.......... +...|..+++.++
T Consensus 241 -l~i~~~~~~~-----------~s~v~~~d~~~~~------------~~~~~~~~l~~~~~~~~~~-v~~~~~~~yi~Tn 295 (414)
T PF02897_consen 241 -LFISSSSGTS-----------ESEVYLLDLDDGG------------SPDAKPKLLSPREDGVEYY-VDHHGDRLYILTN 295 (414)
T ss_dssp -EEEEEESSSS-----------EEEEEEEECCCTT------------TSS-SEEEEEESSSS-EEE-EEEETTEEEEEE-
T ss_pred -EEEEEEcccc-----------CCeEEEEeccccC------------CCcCCcEEEeCCCCceEEE-EEccCCEEEEeeC
Confidence 7766643321 2479999983100 0123556665433222221 1222778888887
Q ss_pred CCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003886 392 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (789)
Q Consensus 392 ~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (789)
.+. ...+|..+++...... ....+ ++.. .++ ..--.+...+++|++....++...|.
T Consensus 296 ~~a-------~~~~l~~~~l~~~~~~----~~~~~--l~~~-~~~---------~~l~~~~~~~~~Lvl~~~~~~~~~l~ 352 (414)
T PF02897_consen 296 DDA-------PNGRLVAVDLADPSPA----EWWTV--LIPE-DED---------VSLEDVSLFKDYLVLSYRENGSSRLR 352 (414)
T ss_dssp TT--------TT-EEEEEETTSTSGG----GEEEE--EE---SSS---------EEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred CCC-------CCcEEEEecccccccc----cceeE--EcCC-CCc---------eeEEEEEEECCEEEEEEEECCccEEE
Confidence 652 3468999998765421 11101 1110 000 00112445677899998999999999
Q ss_pred EEECC-CCcEEEecCCCC-CceeEEeeecCCEEEEEEeCCCCCCeEEEEeecccC
Q 003886 472 SVNVS-SGELLRITPAES-NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 524 (789)
Q Consensus 472 ~~dl~-tg~~~~lt~~~~-~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~~ 524 (789)
++++. +.....+..... .+.......+++.+.+..+++.+|+.+|.+|+.+++
T Consensus 353 v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 353 VYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred EEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 99998 555555544332 222333446788999999999999999999988664
No 134
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.10 E-value=1.5e-08 Score=105.13 Aligned_cols=266 Identities=17% Similarity=0.210 Sum_probs=149.4
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
..+....|+|+|+.|++....+ ...+| ..++.......... .+ ..+.|+|+++.|+..+.+...
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g-----~i~i~~~~~~~~~~~~~~~~~---~i------~~~~~~~~~~~l~~~~~~~~i 75 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDG-----TIKVWDLETGELLRTLKGHTG---PV------RDVAASADGTYLASGSSDKTI 75 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCc-----EEEEEEeeCCCcEEEEecCCc---ce------eEEEECCCCCEEEEEcCCCeE
Confidence 4578899999999999876532 34444 23332222222111 11 588999999988887764432
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCc-cCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCc
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGK-RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 310 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~-~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (789)
. .|+............+........|.++ +..+... ....|.+||+.+++..... ......+..+.|+|+++.
T Consensus 76 ~--i~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~-- 149 (289)
T cd00200 76 R--LWDLETGECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTL-RGHTDWVNSVAFSPDGTF-- 149 (289)
T ss_pred E--EEEcCcccceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEe-ccCCCcEEEEEEcCcCCE--
Confidence 1 2332221111112222222333456655 3333333 3788999999876654431 223335778999999764
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEe
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 390 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s 390 (789)
++++. ....|+++|+. .......+..+...+....|+|+|+.|++.+
T Consensus 150 ---l~~~~--------------~~~~i~i~d~~----------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 196 (289)
T cd00200 150 ---VASSS--------------QDGTIKLWDLR----------------TGKCVATLTGHTGEVNSVAFSPDGEKLLSSS 196 (289)
T ss_pred ---EEEEc--------------CCCcEEEEEcc----------------ccccceeEecCccccceEEECCCcCEEEEec
Confidence 44442 12368888872 2223344445555688899999999888877
Q ss_pred cCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEE
Q 003886 391 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 470 (789)
Q Consensus 391 ~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l 470 (789)
.+ ..+.+||+.++.......... ..+..+.|++++. +++.+..++. |
T Consensus 197 ~~-----------~~i~i~d~~~~~~~~~~~~~~-------------------~~i~~~~~~~~~~-~~~~~~~~~~--i 243 (289)
T cd00200 197 SD-----------GTIKLWDLSTGKCLGTLRGHE-------------------NGVNSVAFSPDGY-LLASGSEDGT--I 243 (289)
T ss_pred CC-----------CcEEEEECCCCceecchhhcC-------------------CceEEEEEcCCCc-EEEEEcCCCc--E
Confidence 53 258899987644322111100 1234567999865 5555543444 5
Q ss_pred EEEECCCCcEEEecCCC-CCceeEEeeecCCEEEEE
Q 003886 471 ISVNVSSGELLRITPAE-SNFSWSLLTLDGDNIIAV 505 (789)
Q Consensus 471 ~~~dl~tg~~~~lt~~~-~~~~~~~~s~dg~~l~~~ 505 (789)
+.+|+.+++........ .......++++++.++..
T Consensus 244 ~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 279 (289)
T cd00200 244 RVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASG 279 (289)
T ss_pred EEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEe
Confidence 55566666554443332 234445677776655543
No 135
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.09 E-value=5.8e-10 Score=110.14 Aligned_cols=128 Identities=23% Similarity=0.226 Sum_probs=94.7
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHH-HCCcEEEEEcCCCCCCCCchhhccCCC-----
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPG----- 645 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la-~~Gy~V~~~d~rGs~G~G~~~~~~~~~----- 645 (789)
+|...++++|.|.+.+ ++.|+||++||+.++.....-..-+..++ ..||.|+.||- +...+......
T Consensus 43 ~g~~r~y~l~vP~g~~--~~apLvv~LHG~~~sgag~~~~sg~d~lAd~~gFlV~yPdg-----~~~~wn~~~~~~~~~p 115 (312)
T COG3509 43 NGLKRSYRLYVPPGLP--SGAPLVVVLHGSGGSGAGQLHGTGWDALADREGFLVAYPDG-----YDRAWNANGCGNWFGP 115 (312)
T ss_pred CCCccceEEEcCCCCC--CCCCEEEEEecCCCChHHhhcccchhhhhcccCcEEECcCc-----cccccCCCcccccCCc
Confidence 5677899999998753 33499999999777532221111234555 68999999963 33333211111
Q ss_pred ---CCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 646 ---KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 646 ---~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
.-+..|+..+.+.++.++.+..||+.||.|.|.|.||.|+.+++..+|++|.++..+++..
T Consensus 116 ~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~ 179 (312)
T COG3509 116 ADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLL 179 (312)
T ss_pred ccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeeccc
Confidence 2344567888889999999888999999999999999999999999999999998887754
No 136
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=99.06 E-value=1.5e-09 Score=107.89 Aligned_cols=114 Identities=22% Similarity=0.265 Sum_probs=90.1
Q ss_pred EEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHH
Q 003886 578 AIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLT 657 (789)
Q Consensus 578 ~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~ 657 (789)
-.++.|. ..+.||+|||+||.. .....|....+.+++.||+|+.+|+....+ .-...++++..+
T Consensus 6 l~v~~P~---~~g~yPVv~f~~G~~--~~~s~Ys~ll~hvAShGyIVV~~d~~~~~~-----------~~~~~~~~~~~~ 69 (259)
T PF12740_consen 6 LLVYYPS---SAGTYPVVLFLHGFL--LINSWYSQLLEHVASHGYIVVAPDLYSIGG-----------PDDTDEVASAAE 69 (259)
T ss_pred eEEEecC---CCCCcCEEEEeCCcC--CCHHHHHHHHHHHHhCceEEEEecccccCC-----------CCcchhHHHHHH
Confidence 3477787 567899999999965 334457788899999999999999654222 122345788899
Q ss_pred HHHHHHHc--C------CCCCccEEEEEcCccHHHHHHHHHhC-----CCceeEEEEeCCccc
Q 003886 658 AIDHVIDM--G------LANPSKVTVVGGSHGGFLTTHLIGQA-----PDKFVAAAARNPLCN 707 (789)
Q Consensus 658 ~i~~l~~~--~------~~d~~rv~l~G~S~GG~~a~~~~~~~-----p~~~~a~v~~~pv~~ 707 (789)
.++|+.+. . .+|-+|++|+|||.||-++..++..+ +.+|+++++..||-.
T Consensus 70 vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVdG 132 (259)
T PF12740_consen 70 VIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVDG 132 (259)
T ss_pred HHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEeccccc
Confidence 99998762 1 25889999999999999999998876 458999999999974
No 137
>PRK05855 short chain dehydrogenase; Validated
Probab=99.05 E-value=2e-09 Score=125.51 Aligned_cols=105 Identities=14% Similarity=0.265 Sum_probs=69.1
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCc
Q 003886 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649 (789)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~ 649 (789)
..+|..++...+-+ ...|.||++||.+.+ ...|......| ..||.|+++|+|| +|.+.... ....
T Consensus 9 ~~~g~~l~~~~~g~------~~~~~ivllHG~~~~--~~~w~~~~~~L-~~~~~Vi~~D~~G---~G~S~~~~---~~~~ 73 (582)
T PRK05855 9 SSDGVRLAVYEWGD------PDRPTVVLVHGYPDN--HEVWDGVAPLL-ADRFRVVAYDVRG---AGRSSAPK---RTAA 73 (582)
T ss_pred eeCCEEEEEEEcCC------CCCCeEEEEcCCCch--HHHHHHHHHHh-hcceEEEEecCCC---CCCCCCCC---cccc
Confidence 34778887665432 236899999997654 45677777777 6789999999998 55543221 1112
Q ss_pred ccHHHHHHHHHHHHHcCCCCCc-cEEEEEcCccHHHHHHHHHh
Q 003886 650 QDVNDVLTAIDHVIDMGLANPS-KVTVVGGSHGGFLTTHLIGQ 691 (789)
Q Consensus 650 ~~~~D~~~~i~~l~~~~~~d~~-rv~l~G~S~GG~~a~~~~~~ 691 (789)
...+++.+.+..+++. +... ++.|+|||+||.+++.++.+
T Consensus 74 ~~~~~~a~dl~~~i~~--l~~~~~~~lvGhS~Gg~~a~~~a~~ 114 (582)
T PRK05855 74 YTLARLADDFAAVIDA--VSPDRPVHLLAHDWGSIQGWEAVTR 114 (582)
T ss_pred cCHHHHHHHHHHHHHH--hCCCCcEEEEecChHHHHHHHHHhC
Confidence 2344555444444443 2233 49999999999999877765
No 138
>PRK13616 lipoprotein LpqB; Provisional
Probab=99.04 E-value=8.7e-09 Score=116.75 Aligned_cols=104 Identities=12% Similarity=0.019 Sum_probs=73.7
Q ss_pred EecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCC-----
Q 003886 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE----- 175 (789)
Q Consensus 101 ~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~----- 175 (789)
.+..||||++++|+....+ ..+..++.||+.+. ++..++++.+. ....|+|||||++|+|+++.+
T Consensus 354 spaiSpdG~~vA~v~~~~~-~~~d~~s~Lwv~~~---gg~~~~lt~g~------~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 354 SAALSRSGRQVAAVVTLGR-GAPDPASSLWVGPL---GGVAVQVLEGH------SLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred cceECCCCCEEEEEEeecC-CCCCcceEEEEEeC---CCcceeeecCC------CCCCceECCCCCceEEEecCcceEEE
Confidence 4556899999999987666 33446789999875 33446776553 377899999999999997642
Q ss_pred ---CCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEe
Q 003886 176 ---NESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 226 (789)
Q Consensus 176 ---~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~ 226 (789)
++..+++.++ +.++..+ .+...+ ..+.|||||++|||+.
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~--~~~g~I----------ssl~wSpDG~RiA~i~ 466 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS--RVPGPI----------SELQLSRDGVRAAMII 466 (591)
T ss_pred eccCCCceEEEEeccCchhhh--ccCCCc----------CeEEECCCCCEEEEEE
Confidence 2344666666 4444433 333333 8999999999999985
No 139
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=99.03 E-value=2.3e-09 Score=116.97 Aligned_cols=131 Identities=18% Similarity=0.156 Sum_probs=102.4
Q ss_pred ecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCc----hhhHHHH--HHHHHCCcEEEEEcCCCCCCCCchhhcc
Q 003886 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL----SSYSKSL--AFLSSVGYSLLIVNYRGSLGFGEEALQS 642 (789)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~----~~~~~~~--~~la~~Gy~V~~~d~rGs~G~G~~~~~~ 642 (789)
+-.||+.|..-+|+|. ..++.|+++..+-.|..... ....... ..++.+||+|+..|.||+.+....+..
T Consensus 25 ~MRDGvrL~~dIy~Pa---~~g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa~GYavV~qDvRG~~~SeG~~~~- 100 (563)
T COG2936 25 PMRDGVRLAADIYRPA---GAGPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAAQGYAVVNQDVRGRGGSEGVFDP- 100 (563)
T ss_pred EecCCeEEEEEEEccC---CCCCCceeEEeeccccccccccCcchhhcccccceeecCceEEEEecccccccCCcccce-
Confidence 3458999999999998 56899999999854544321 1111111 378999999999999997665544421
Q ss_pred CCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccch
Q 003886 643 LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 708 (789)
Q Consensus 643 ~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~ 708 (789)
+...+.+|-.+.|+|+.++++.+ .+|+++|.||+|+..+++|+..|.-.||++...+..|.
T Consensus 101 ----~~~~E~~Dg~D~I~Wia~QpWsN-G~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D~ 161 (563)
T COG2936 101 ----ESSREAEDGYDTIEWLAKQPWSN-GNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVDR 161 (563)
T ss_pred ----eccccccchhHHHHHHHhCCccC-CeeeeecccHHHHHHHHHHhcCCchheeeccccccccc
Confidence 22257899999999999999765 68999999999999999999888889999998887774
No 140
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.03 E-value=5.4e-09 Score=106.48 Aligned_cols=237 Identities=12% Similarity=0.090 Sum_probs=149.7
Q ss_pred cccEEEEeCCC--CCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPS--GSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPd--G~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
+.+....|+|. +..||..+.++ ...+|.-.+...+.++.+.. ..+..++|.|+|+.|+..+.+.+=
T Consensus 218 ~~v~~~~fhP~~~~~~lat~s~Dg-----tvklw~~~~e~~l~~l~gH~-------~RVs~VafHPsG~~L~TasfD~tW 285 (459)
T KOG0272|consen 218 SRVGAAVFHPVDSDLNLATASADG-----TVKLWKLSQETPLQDLEGHL-------ARVSRVAFHPSGKFLGTASFDSTW 285 (459)
T ss_pred cceeeEEEccCCCccceeeeccCC-----ceeeeccCCCcchhhhhcch-------hhheeeeecCCCceeeecccccch
Confidence 56888999998 56777766543 45566222212222221111 012789999999999999988754
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCC-ccceEEEeeCCCCCc
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL-SVGQVVWAPLNEGLH 310 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~-~~~~~~wSPDg~~~~ 310 (789)
+ .|+...+.+......+..-.....|.+|+.-..++.-+.-=.|||+.+|...-. ..++. .+..+.|||+|-.
T Consensus 286 R--lWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~--L~gH~k~I~~V~fsPNGy~-- 359 (459)
T KOG0272|consen 286 R--LWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMF--LAGHIKEILSVAFSPNGYH-- 359 (459)
T ss_pred h--hcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEE--ecccccceeeEeECCCceE--
Confidence 3 466666777777778888788888999954444444455566899999876554 34444 6789999999998
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecC-CCCEEEEE
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSP-DGKFLVFL 389 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~Sp-DG~~la~~ 389 (789)
|+-.+. ++.+.++|+. .......+..+..-+...+|+| -|++|+..
T Consensus 360 --lATgs~---------------Dnt~kVWDLR----------------~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Ta 406 (459)
T KOG0272|consen 360 --LATGSS---------------DNTCKVWDLR----------------MRSELYTIPAHSNLVSQVKYSPQEGYFLVTA 406 (459)
T ss_pred --EeecCC---------------CCcEEEeeec----------------ccccceecccccchhhheEecccCCeEEEEc
Confidence 776652 2234445552 2334556666777789999999 67777766
Q ss_pred ecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEE
Q 003886 390 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 469 (789)
Q Consensus 390 s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~ 469 (789)
+.+. .+.+|.-.+........+... -+.++..++||..| .++..+....
T Consensus 407 syD~-----------t~kiWs~~~~~~~ksLaGHe~-------------------kV~s~Dis~d~~~i-~t~s~DRT~K 455 (459)
T KOG0272|consen 407 SYDN-----------TVKIWSTRTWSPLKSLAGHEG-------------------KVISLDISPDSQAI-ATSSFDRTIK 455 (459)
T ss_pred ccCc-----------ceeeecCCCcccchhhcCCcc-------------------ceEEEEeccCCceE-EEeccCceee
Confidence 6543 355555444333222222211 23355678899855 5666666666
Q ss_pred EEE
Q 003886 470 IIS 472 (789)
Q Consensus 470 l~~ 472 (789)
||.
T Consensus 456 LW~ 458 (459)
T KOG0272|consen 456 LWR 458 (459)
T ss_pred ecc
Confidence 763
No 141
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=99.03 E-value=5.5e-10 Score=118.46 Aligned_cols=132 Identities=23% Similarity=0.242 Sum_probs=93.6
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCch-hhHHHHHHHHHCC-cEEEEEcCC-CCCCCCc--hhhccCC
Q 003886 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFLSSVG-YSLLIVNYR-GSLGFGE--EALQSLP 644 (789)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-~~~~~~~~la~~G-y~V~~~d~r-Gs~G~G~--~~~~~~~ 644 (789)
+.|++.|. ++.|. ...++.|+||+||||...+... ........|+++| ++|+.+||| |--||=. ++. ...
T Consensus 76 sEDCL~LN--IwaP~--~~a~~~PVmV~IHGG~y~~Gs~s~~~ydgs~La~~g~vVvVSvNYRLG~lGfL~~~~~~-~~~ 150 (491)
T COG2272 76 SEDCLYLN--IWAPE--VPAEKLPVMVYIHGGGYIMGSGSEPLYDGSALAARGDVVVVSVNYRLGALGFLDLSSLD-TED 150 (491)
T ss_pred cccceeEE--eeccC--CCCCCCcEEEEEeccccccCCCcccccChHHHHhcCCEEEEEeCcccccceeeehhhcc-ccc
Confidence 44665554 77786 3567799999999988754333 2223567899998 999999999 6555521 111 001
Q ss_pred CCCCcccHHHHHHHHHHHHHc---CCCCCccEEEEEcCccHHHHHHHHHhCCC---ceeEEEEeCCccc
Q 003886 645 GKVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCN 707 (789)
Q Consensus 645 ~~~~~~~~~D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~~~~~p~---~~~a~v~~~pv~~ 707 (789)
......-+.|++.+++|+.++ -.-|+++|.|+|.|.|++.++.+++- |. +|+.+|+.+|-+.
T Consensus 151 ~~~~n~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~-P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 151 AFASNLGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAV-PSAKGLFHRAIALSGAAS 218 (491)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcC-ccchHHHHHHHHhCCCCC
Confidence 111123378999999999886 23699999999999999999988773 53 7888888887654
No 142
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=99.02 E-value=5.4e-10 Score=127.09 Aligned_cols=131 Identities=25% Similarity=0.281 Sum_probs=95.8
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHC-C-cEEEEEcCC-CCCCCCchhhccCCCCC
Q 003886 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV-G-YSLLIVNYR-GSLGFGEEALQSLPGKV 647 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~-G-y~V~~~d~r-Gs~G~G~~~~~~~~~~~ 647 (789)
.|.+ ...++.|......++.|+||++|||+......... ....|+.. + ++|+.+||| |..|+.........+++
T Consensus 76 Edcl--~l~i~~p~~~~~~~~~pv~v~ihGG~~~~g~~~~~-~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~~~~~n~ 152 (493)
T cd00312 76 EDCL--YLNVYTPKNTKPGNSLPVMVWIHGGGFMFGSGSLY-PGDGLAREGDNVIVVSINYRLGVLGFLSTGDIELPGNY 152 (493)
T ss_pred CcCC--eEEEEeCCCCCCCCCCCEEEEEcCCccccCCCCCC-ChHHHHhcCCCEEEEEecccccccccccCCCCCCCcch
Confidence 3554 44577787544467899999999998754433322 33455544 3 999999999 88788665433334444
Q ss_pred CcccHHHHHHHHHHHHHc---CCCCCccEEEEEcCccHHHHHHHHHh--CCCceeEEEEeCCccc
Q 003886 648 GSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLCN 707 (789)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~~~~--~p~~~~a~v~~~pv~~ 707 (789)
| +.|+.++++|+.++ -..|+++|.|+|+|.||+++.+++.. .+.+|+++|+.++...
T Consensus 153 g---~~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~ 214 (493)
T cd00312 153 G---LKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSAL 214 (493)
T ss_pred h---HHHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCcc
Confidence 4 78999999999875 23799999999999999999988875 2357999999988654
No 143
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.02 E-value=2.5e-07 Score=99.75 Aligned_cols=279 Identities=17% Similarity=0.184 Sum_probs=148.3
Q ss_pred eEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecC--CCCCCeEEEEecC-CceeEEEecCCCcccc
Q 003886 127 KFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNP--ENESPIQFELWSQ-SQLEKEFHVPQTVHGS 203 (789)
Q Consensus 127 ~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~--~~~~~~~~~i~~~-~~~~~~~~~~~~~~g~ 203 (789)
+.|..+.++.+.++...+.... ........++||+++.|+.+.+. +.+.-..|.+..+ +++..+-.....-.+.
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~---~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p 89 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVA---EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSP 89 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEE---ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCE
T ss_pred CcEEEEEEcCCCCCceEeeeec---CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCc
Confidence 4555555545544433222110 11345667899999998777664 2344445555544 6666555443111111
Q ss_pred ccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccC-
Q 003886 204 VYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS- 282 (789)
Q Consensus 204 v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~- 282 (789)
-.++.+|||+.|+.+... ...+.+++++.
T Consensus 90 -------~~i~~~~~g~~l~vany~-------------------------------------------~g~v~v~~l~~~ 119 (345)
T PF10282_consen 90 -------CHIAVDPDGRFLYVANYG-------------------------------------------GGSVSVFPLDDD 119 (345)
T ss_dssp -------EEEEECTTSSEEEEEETT-------------------------------------------TTEEEEEEECTT
T ss_pred -------EEEEEecCCCEEEEEEcc-------------------------------------------CCeEEEEEccCC
Confidence 358899999987664221 24566666654
Q ss_pred CceEecc--------CC----CCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhh
Q 003886 283 GEVQAVK--------GI----PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (789)
Q Consensus 283 g~~~~l~--------~~----~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (789)
|.+.... +. .......++.++|||+. +|+.+... ..|+.+++..
T Consensus 120 g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~-----v~v~dlG~-------------D~v~~~~~~~------ 175 (345)
T PF10282_consen 120 GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRF-----VYVPDLGA-------------DRVYVYDIDD------ 175 (345)
T ss_dssp SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSE-----EEEEETTT-------------TEEEEEEE-T------
T ss_pred cccceeeeecccCCCCCcccccccccceeEEECCCCCE-----EEEEecCC-------------CEEEEEEEeC------
Confidence 4433220 00 11234568899999996 45653322 2577777621
Q ss_pred hhhhhcCCCCCCCee-----ecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceee
Q 003886 351 ELELKESSSEDLPVV-----NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVD 425 (789)
Q Consensus 351 ~~~~~~~~~~~~~~~-----~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~ 425 (789)
.+++.. .+.. ........|+|||++++.+.... +.|.++++...... + ....
T Consensus 176 ---------~~~~l~~~~~~~~~~-G~GPRh~~f~pdg~~~Yv~~e~s----------~~v~v~~~~~~~g~-~--~~~~ 232 (345)
T PF10282_consen 176 ---------DTGKLTPVDSIKVPP-GSGPRHLAFSPDGKYAYVVNELS----------NTVSVFDYDPSDGS-L--TEIQ 232 (345)
T ss_dssp ---------TS-TEEEEEEEECST-TSSEEEEEE-TTSSEEEEEETTT----------TEEEEEEEETTTTE-E--EEEE
T ss_pred ---------CCceEEEeecccccc-CCCCcEEEEcCCcCEEEEecCCC----------CcEEEEeecccCCc-e--eEEE
Confidence 222221 2222 23467889999999876655432 45777777621111 0 0011
Q ss_pred EEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCC--CC-CceeEEeeecCCEE
Q 003886 426 VIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA--ES-NFSWSLLTLDGDNI 502 (789)
Q Consensus 426 v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~-~~~~~~~s~dg~~l 502 (789)
.+... +. .+.+. .....+.++|||++||++....+...+|.+|..+|+++.+..- .+ ......++++|++|
T Consensus 233 ~~~~~--~~--~~~~~--~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l 306 (345)
T PF10282_consen 233 TISTL--PE--GFTGE--NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYL 306 (345)
T ss_dssp EEESC--ET--TSCSS--SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEE
T ss_pred Eeeec--cc--ccccc--CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEE
Confidence 11111 11 11110 0123567899999998877666777888888788888766332 12 23445788899988
Q ss_pred EEEEeCCCC
Q 003886 503 IAVSSSPVD 511 (789)
Q Consensus 503 ~~~~ss~~~ 511 (789)
+......+.
T Consensus 307 ~Va~~~s~~ 315 (345)
T PF10282_consen 307 YVANQDSNT 315 (345)
T ss_dssp EEEETTTTE
T ss_pred EEEecCCCe
Confidence 877655554
No 144
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.01 E-value=1.5e-08 Score=104.72 Aligned_cols=268 Identities=15% Similarity=0.175 Sum_probs=161.1
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
.++...+|+-||..||+....+ ..++| .+|.....+.. ..|+| ..+.|+-+|++|+-...+.+.
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G-----~~riw~~~G~l~~tl~~---HkgPI------~slKWnk~G~yilS~~vD~tt- 300 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDG-----EARIWNKDGNLISTLGQ---HKGPI------FSLKWNKKGTYILSGGVDGTT- 300 (524)
T ss_pred CCcceEEecCCCCeEEEeecCc-----EEEEEecCchhhhhhhc---cCCce------EEEEEcCCCCEEEeccCCccE-
Confidence 4588999999999999988765 67888 56655443332 23444 789999999999987666542
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCce-EeccCCCCCCccceEEEeeCCCCCcc
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-QAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~-~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (789)
..|+...+.....+.-+....-+.+|..+ .+-.....+..|+|+-+....+ ..+ +..+..+..+.|.|.|+-
T Consensus 301 -ilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~--~GH~g~V~alk~n~tg~L--- 373 (524)
T KOG0273|consen 301 -ILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTF--IGHHGEVNALKWNPTGSL--- 373 (524)
T ss_pred -EEEeccCceEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceee--ecccCceEEEEECCCCce---
Confidence 23332221111111111111122334322 1222223455677777755443 334 334557788999999996
Q ss_pred EEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCE------
Q 003886 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKF------ 385 (789)
Q Consensus 312 ~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~------ 385 (789)
|+-.+.+. .|-++... +......|..+...+....|||+|.-
T Consensus 374 -LaS~SdD~---------------TlkiWs~~----------------~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~ 421 (524)
T KOG0273|consen 374 -LASCSDDG---------------TLKIWSMG----------------QSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNM 421 (524)
T ss_pred -EEEecCCC---------------eeEeeecC----------------CCcchhhhhhhccceeeEeecCCCCccCCCcC
Confidence 66665322 33344431 44455666666667788899998862
Q ss_pred ---EEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEE
Q 003886 386 ---LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 462 (789)
Q Consensus 386 ---la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~ 462 (789)
|+..+-+ ..+.+||...+.....-.. ....++.+.|||||+++ .++
T Consensus 422 ~~~l~sas~d-----------stV~lwdv~~gv~i~~f~k-------------------H~~pVysvafS~~g~yl-AsG 470 (524)
T KOG0273|consen 422 NLMLASASFD-----------STVKLWDVESGVPIHTLMK-------------------HQEPVYSVAFSPNGRYL-ASG 470 (524)
T ss_pred CceEEEeecC-----------CeEEEEEccCCceeEeecc-------------------CCCceEEEEecCCCcEE-Eec
Confidence 3333322 3477788776554311111 11135688999999966 455
Q ss_pred EeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeC
Q 003886 463 IWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSS 508 (789)
Q Consensus 463 ~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss 508 (789)
+.++...|| +..++++.+-..+.+.+...-|+.+|+.|....+.
T Consensus 471 s~dg~V~iw--s~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd 514 (524)
T KOG0273|consen 471 SLDGCVHIW--STKTGKLVKSYQGTGGIFELCWNAAGDKLGACASD 514 (524)
T ss_pred CCCCeeEec--cccchheeEeecCCCeEEEEEEcCCCCEEEEEecC
Confidence 666666666 55588888777776655667788888877666554
No 145
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.01 E-value=5.9e-09 Score=132.30 Aligned_cols=107 Identities=20% Similarity=0.219 Sum_probs=77.6
Q ss_pred CCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCC-C--CCCcccHHHHHHHHHHHHHcCC
Q 003886 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP-G--KVGSQDVNDVLTAIDHVIDMGL 667 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~-~--~~~~~~~~D~~~~i~~l~~~~~ 667 (789)
..|.||++||.+.+ ...|......|.. +|.|+++|+|| +|.+...... . ......++++.+.+..++++
T Consensus 1370 ~~~~vVllHG~~~s--~~~w~~~~~~L~~-~~rVi~~Dl~G---~G~S~~~~~~~~~~~~~~~si~~~a~~l~~ll~~-- 1441 (1655)
T PLN02980 1370 EGSVVLFLHGFLGT--GEDWIPIMKAISG-SARCISIDLPG---HGGSKIQNHAKETQTEPTLSVELVADLLYKLIEH-- 1441 (1655)
T ss_pred CCCeEEEECCCCCC--HHHHHHHHHHHhC-CCEEEEEcCCC---CCCCCCccccccccccccCCHHHHHHHHHHHHHH--
Confidence 46899999997765 4567777777754 59999999998 5554321110 0 11123466666666666655
Q ss_pred CCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
++.+++.|+||||||.+++.++.++|++++++|+.++.
T Consensus 1442 l~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~ 1479 (1655)
T PLN02980 1442 ITPGKVTLVGYSMGARIALYMALRFSDKIEGAVIISGS 1479 (1655)
T ss_pred hCCCCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCC
Confidence 35578999999999999999999999999999988764
No 146
>COG0400 Predicted esterase [General function prediction only]
Probab=99.01 E-value=3.5e-09 Score=102.94 Aligned_cols=154 Identities=17% Similarity=0.143 Sum_probs=100.9
Q ss_pred CCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCccc-------HHHHHHHHH
Q 003886 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD-------VNDVLTAID 660 (789)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~-------~~D~~~~i~ 660 (789)
++...|+||++||.++ ....+......+ .-.+.++.+.-+-.-..+..+.. ....+..+ .+.+.+.++
T Consensus 14 ~~p~~~~iilLHG~Gg--de~~~~~~~~~~-~P~~~~is~rG~v~~~g~~~~f~--~~~~~~~d~edl~~~~~~~~~~l~ 88 (207)
T COG0400 14 GDPAAPLLILLHGLGG--DELDLVPLPELI-LPNATLVSPRGPVAENGGPRFFR--RYDEGSFDQEDLDLETEKLAEFLE 88 (207)
T ss_pred CCCCCcEEEEEecCCC--Chhhhhhhhhhc-CCCCeEEcCCCCccccCccccee--ecCCCccchhhHHHHHHHHHHHHH
Confidence 4556789999999653 344554433333 33366666664422111111111 11122222 234455566
Q ss_pred HHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCCh
Q 003886 661 HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSV 740 (789)
Q Consensus 661 ~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (789)
.+.++..+|.+|+.++|+|.|+.+++.++.++|+.|+++|+.+|..-+..
T Consensus 89 ~~~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~------------------------------ 138 (207)
T COG0400 89 ELAEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEP------------------------------ 138 (207)
T ss_pred HHHHHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCC------------------------------
Confidence 66666668999999999999999999999999999999999888652100
Q ss_pred hhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 741 EDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 741 ~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
. ..-..-.+|+|++||+.|++||...+.++.+.|+.
T Consensus 139 ~-----------~~~~~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~ 174 (207)
T COG0400 139 E-----------LLPDLAGTPILLSHGTEDPVVPLALAEALAEYLTA 174 (207)
T ss_pred c-----------cccccCCCeEEEeccCcCCccCHHHHHHHHHHHHH
Confidence 0 00112357999999999999999999999988764
No 147
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.01 E-value=1.9e-07 Score=98.21 Aligned_cols=127 Identities=14% Similarity=0.139 Sum_probs=74.3
Q ss_pred CcceecC-CCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCcccc
Q 003886 375 FFPRFSP-DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS 453 (789)
Q Consensus 375 ~~p~~Sp-DG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~ 453 (789)
..|.|++ ||+ .+|.+... .++.+|+.+.+.... ....+...- ...++--|| +...+.+++
T Consensus 197 ~rP~~~~~dg~-~~~vs~eG-----------~V~~id~~~~~~~~~--~~~~~~~~~-~~~~~wrP~----g~q~ia~~~ 257 (352)
T TIGR02658 197 NHPAYSNKSGR-LVWPTYTG-----------KIFQIDLSSGDAKFL--PAIEAFTEA-EKADGWRPG----GWQQVAYHR 257 (352)
T ss_pred cCCceEcCCCc-EEEEecCC-----------eEEEEecCCCcceec--ceeeecccc-ccccccCCC----cceeEEEcC
Confidence 5678888 775 56777543 599999876554321 111111100 001112232 222378999
Q ss_pred CCCEEEEEEEe-------CCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCC-EEEEEEeCCCCCCeEEEEeeccc
Q 003886 454 DGCTMLLSSIW-------GSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGD-NIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 454 Dg~~l~~~~~~-------~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~-~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
||+++|+.... .+...++.+|..+++...-...........+++|++ .|+.+.....+ +.++|..+.
T Consensus 258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~---VsViD~~t~ 332 (352)
T TIGR02658 258 ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKT---LYIFDAETG 332 (352)
T ss_pred CCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCc---EEEEECcCC
Confidence 99999886532 123589999999988766444333344568999999 44444434343 778886544
No 148
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.00 E-value=1.8e-08 Score=112.49 Aligned_cols=252 Identities=14% Similarity=0.179 Sum_probs=158.2
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
.+....+||||+.++...... +..+|. .+.. .+.....+.+-. +..+.|||||+.|+-.+.+...+
T Consensus 161 sv~~~~fs~~g~~l~~~~~~~-----~i~~~~~~~~~~-~~~~~l~~h~~~------v~~~~fs~d~~~l~s~s~D~tir 228 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAASSDG-----LIRIWKLEGIKS-NLLRELSGHTRG------VSDVAFSPDGSYLLSGSDDKTLR 228 (456)
T ss_pred ceEEEEEcCCCCeEEEccCCC-----cEEEeecccccc-hhhccccccccc------eeeeEECCCCcEEEEecCCceEE
Confidence 466788999999988875543 566662 2221 111111222222 27999999999998888877654
Q ss_pred CCCccC-CCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCcc
Q 003886 233 KPTFSL-GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (789)
Q Consensus 233 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (789)
.|.. ......+.++.+..++....|.++......+..+..|.+||+.+++..... ......+..+.|++||+.
T Consensus 229 --iwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l-~~hs~~is~~~f~~d~~~--- 302 (456)
T KOG0266|consen 229 --IWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKL-KGHSDGISGLAFSPDGNL--- 302 (456)
T ss_pred --EeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEee-eccCCceEEEEECCCCCE---
Confidence 3444 233455667788999988999999756667778899999999998876552 223336778899999997
Q ss_pred EEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC---eeecCCCCC--ccCcceecCCCCEE
Q 003886 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP---VVNLTESIS--SAFFPRFSPDGKFL 386 (789)
Q Consensus 312 ~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~Lt~~~~--~~~~p~~SpDG~~l 386 (789)
|+-.+. +..|.++|+ .++. ...+..... ......|||+|++|
T Consensus 303 -l~s~s~---------------d~~i~vwd~-----------------~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~l 349 (456)
T KOG0266|consen 303 -LVSASY---------------DGTIRVWDL-----------------ETGSKLCLKLLSGAENSAPVTSVQFSPNGKYL 349 (456)
T ss_pred -EEEcCC---------------CccEEEEEC-----------------CCCceeeeecccCCCCCCceeEEEECCCCcEE
Confidence 665541 236888887 5555 234443333 46889999999998
Q ss_pred EEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCC
Q 003886 387 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 466 (789)
Q Consensus 387 a~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~ 466 (789)
+-...+ ..+.+||+..+.......+... +.+ .+..+..+++|+.+ +++..++
T Consensus 350 l~~~~d-----------~~~~~w~l~~~~~~~~~~~~~~--------------~~~--~~~~~~~~~~~~~i-~sg~~d~ 401 (456)
T KOG0266|consen 350 LSASLD-----------RTLKLWDLRSGKSVGTYTGHSN--------------LVR--CIFSPTLSTGGKLI-YSGSEDG 401 (456)
T ss_pred EEecCC-----------CeEEEEEccCCcceeeecccCC--------------cce--eEecccccCCCCeE-EEEeCCc
Confidence 766644 3588888876544211111100 000 11233346788744 5554444
Q ss_pred eEEEEEEECCCCcEEEecCCC
Q 003886 467 SQVIISVNVSSGELLRITPAE 487 (789)
Q Consensus 467 ~~~l~~~dl~tg~~~~lt~~~ 487 (789)
.++.+|+.++...+....+
T Consensus 402 --~v~~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 402 --SVYVWDSSSGGILQRLEGH 420 (456)
T ss_pred --eEEEEeCCccchhhhhcCC
Confidence 4555677666554444333
No 149
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.99 E-value=2.9e-09 Score=112.49 Aligned_cols=101 Identities=22% Similarity=0.365 Sum_probs=72.6
Q ss_pred CCCcEEEEEcCCCCCCCchhhHHHHHHHHHC-CcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCC
Q 003886 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV-GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~-Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (789)
+..|.||++||... ....|...+..|... |+.|+++|..| .|+ .+..+ .+. .....+....+..+....
T Consensus 56 ~~~~pvlllHGF~~--~~~~w~~~~~~L~~~~~~~v~aiDl~G-~g~-~s~~~--~~~--~y~~~~~v~~i~~~~~~~-- 125 (326)
T KOG1454|consen 56 KDKPPVLLLHGFGA--SSFSWRRVVPLLSKAKGLRVLAIDLPG-HGY-SSPLP--RGP--LYTLRELVELIRRFVKEV-- 125 (326)
T ss_pred CCCCcEEEeccccC--CcccHhhhccccccccceEEEEEecCC-CCc-CCCCC--CCC--ceehhHHHHHHHHHHHhh--
Confidence 56788999999655 456777766666544 69999999987 333 22111 111 245666666666655542
Q ss_pred CCccEEEEEcCccHHHHHHHHHhCCCceeEEE
Q 003886 669 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAA 700 (789)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v 700 (789)
-.+++.++|||+||+++..+|+.+|+.++.+|
T Consensus 126 ~~~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv 157 (326)
T KOG1454|consen 126 FVEPVSLVGHSLGGIVALKAAAYYPETVDSLV 157 (326)
T ss_pred cCcceEEEEeCcHHHHHHHHHHhCccccccee
Confidence 23559999999999999999999999999999
No 150
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.97 E-value=2.5e-08 Score=97.41 Aligned_cols=165 Identities=16% Similarity=0.249 Sum_probs=100.1
Q ss_pred cEEEEeCCCCCeEEEEecCC---C-----CCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEee
Q 003886 156 ASAVVPSPSGSKLLVVRNPE---N-----ESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAE 227 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~---~-----~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~ 227 (789)
.....|+|+|++|++....+ . +...++.+...+.....+.+.. .+.| ..++|||+|+++|.+..
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~--~~~I------~~~~WsP~g~~favi~g 79 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKK--EGPI------HDVAWSPNGNEFAVIYG 79 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccC--CCce------EEEEECcCCCEEEEEEc
Confidence 45678999999999977621 1 2234555653333344443322 1223 79999999999987743
Q ss_pred cCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCC
Q 003886 228 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 307 (789)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~ 307 (789)
.. ...+.++|+++..+..+ .......+.|||+|+
T Consensus 80 ~~------------------------------------------~~~v~lyd~~~~~i~~~----~~~~~n~i~wsP~G~ 113 (194)
T PF08662_consen 80 SM------------------------------------------PAKVTLYDVKGKKIFSF----GTQPRNTISWSPDGR 113 (194)
T ss_pred cC------------------------------------------CcccEEEcCcccEeEee----cCCCceEEEECCCCC
Confidence 21 13566777764444444 123456789999999
Q ss_pred CCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEE
Q 003886 308 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 387 (789)
Q Consensus 308 ~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la 387 (789)
. |+..+.. +....|..+|. ...+...... ........|||||++|+
T Consensus 114 ~----l~~~g~~------------n~~G~l~~wd~-----------------~~~~~i~~~~-~~~~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 114 F----LVLAGFG------------NLNGDLEFWDV-----------------RKKKKISTFE-HSDATDVEWSPDGRYLA 159 (194)
T ss_pred E----EEEEEcc------------CCCcEEEEEEC-----------------CCCEEeeccc-cCcEEEEEEcCCCCEEE
Confidence 8 8887632 12346888887 3222222222 23467889999999999
Q ss_pred EEecCCCCCCCCccccceeEEeecCC
Q 003886 388 FLSAKSSVDSGAHSATDSLHRIDWPT 413 (789)
Q Consensus 388 ~~s~~~~~~~g~~~~~~~L~~~d~~~ 413 (789)
..+.... +...+.+.+|+..+
T Consensus 160 ta~t~~r-----~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 160 TATTSPR-----LRVDNGFKIWSFQG 180 (194)
T ss_pred EEEeccc-----eeccccEEEEEecC
Confidence 8765321 11224567777655
No 151
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.96 E-value=1.2e-06 Score=88.80 Aligned_cols=292 Identities=15% Similarity=0.118 Sum_probs=154.4
Q ss_pred eeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCC-CCCCeEEEEe-cCCceeEEEecCCCcccc
Q 003886 126 KKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE-NESPIQFELW-SQSQLEKEFHVPQTVHGS 203 (789)
Q Consensus 126 ~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~-~~~~~~~~i~-~~~~~~~~~~~~~~~~g~ 203 (789)
.+.|+.+.+++..++...+. ...+.+...-.+|+|+++.|+.+...+ .+.-.-|.++ ++|++..+-+....-++.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~---~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p 91 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQ---LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPP 91 (346)
T ss_pred CCceEEEEEeCcccccchhh---hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCC
Confidence 34566666654444321111 111225677889999999997766552 2444556666 457665554432211111
Q ss_pred ccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccC-
Q 003886 204 VYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS- 282 (789)
Q Consensus 204 v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~- 282 (789)
-.++.++||+.|+.+ .-.. ..|-|..+..
T Consensus 92 -------~yvsvd~~g~~vf~A-nY~~------------------------------------------g~v~v~p~~~d 121 (346)
T COG2706 92 -------CYVSVDEDGRFVFVA-NYHS------------------------------------------GSVSVYPLQAD 121 (346)
T ss_pred -------eEEEECCCCCEEEEE-EccC------------------------------------------ceEEEEEcccC
Confidence 358899999866544 3211 1222222211
Q ss_pred CceEec----c--C-----CCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhh
Q 003886 283 GEVQAV----K--G-----IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (789)
Q Consensus 283 g~~~~l----~--~-----~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (789)
|.+..+ . + -...-.+....++||++. |+.+. -.. ..|+.+++..+
T Consensus 122 G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~----l~v~D-LG~-------------Dri~~y~~~dg------ 177 (346)
T COG2706 122 GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRY----LVVPD-LGT-------------DRIFLYDLDDG------ 177 (346)
T ss_pred CccccceeeeecCCCCCCccccCCccceeeeCCCCCE----EEEee-cCC-------------ceEEEEEcccC------
Confidence 221111 0 0 001123557789999996 44443 211 25777777210
Q ss_pred hhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCC--CCCCCcccceeeEEee
Q 003886 352 LELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT--NGNFSSLEKIVDVIPV 429 (789)
Q Consensus 352 ~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~--~~~~~~t~~~~~v~~~ 429 (789)
.........+ ..........|.|+||..+.+..-. +++-++..+. ++. ..+-.+
T Consensus 178 ------~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~----------stV~v~~y~~~~g~~-------~~lQ~i 233 (346)
T COG2706 178 ------KLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELN----------STVDVLEYNPAVGKF-------EELQTI 233 (346)
T ss_pred ------cccccccccc-CCCCCcceEEEcCCCcEEEEEeccC----------CEEEEEEEcCCCceE-------EEeeee
Confidence 0011112223 2334578999999999655544332 2344444433 222 122222
Q ss_pred eeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecC--CCCC-ceeEEeeecCCEEEEEE
Q 003886 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP--AESN-FSWSLLTLDGDNIIAVS 506 (789)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~--~~~~-~~~~~~s~dg~~l~~~~ 506 (789)
...|+ +|.|- .+...+..++||+.||.+-.......+|.+|..+|++..+.. ..+. .-...++++|+.|+++.
T Consensus 234 ~tlP~--dF~g~--~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~ 309 (346)
T COG2706 234 DTLPE--DFTGT--NWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAAN 309 (346)
T ss_pred ccCcc--ccCCC--CceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEc
Confidence 22232 34441 123456789999988876555567788999999998776533 2221 22346788888888777
Q ss_pred eCCCCCCeEEEEeeccc
Q 003886 507 SSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 507 ss~~~p~~i~~~~~~~~ 523 (789)
...+. -.+|.++..++
T Consensus 310 q~sd~-i~vf~~d~~TG 325 (346)
T COG2706 310 QKSDN-ITVFERDKETG 325 (346)
T ss_pred cCCCc-EEEEEEcCCCc
Confidence 66655 44566665443
No 152
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=98.96 E-value=5e-09 Score=113.50 Aligned_cols=113 Identities=13% Similarity=0.163 Sum_probs=76.4
Q ss_pred CCCcEEEEEcCCCCCCCc----------hhhH-HHH---HHHHHCCcEEEEEcCCCCCC-----C---CchhhccCCC--
Q 003886 590 SCDPLIVVLHGGPHSVSL----------SSYS-KSL---AFLSSVGYSLLIVNYRGSLG-----F---GEEALQSLPG-- 645 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~----------~~~~-~~~---~~la~~Gy~V~~~d~rGs~G-----~---G~~~~~~~~~-- 645 (789)
.+.++||+.|+-.++... ..|. ..+ ..+-...|.||++|.-|++. + |....+...+
T Consensus 54 ~~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n~lG~~~~~~p~~g~tgp~s~~p~tg~~ 133 (389)
T PRK06765 54 AKSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTDTLCNVQVKDPNVITTGPASINPKTGKP 133 (389)
T ss_pred CCCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEecccCCCcCCCCCCCCCCCCCCCcCCCCc
Confidence 467999999995543211 1222 221 23445569999999997532 1 2221111111
Q ss_pred ---CCCcccHHHHHHHHHHHHHcCCCCCccEE-EEEcCccHHHHHHHHHhCCCceeEEEEeCC
Q 003886 646 ---KVGSQDVNDVLTAIDHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAARNP 704 (789)
Q Consensus 646 ---~~~~~~~~D~~~~i~~l~~~~~~d~~rv~-l~G~S~GG~~a~~~~~~~p~~~~a~v~~~p 704 (789)
++....+.|+.+.+..+++. ...+++. |+||||||++++.++.++|++++.+|+.++
T Consensus 134 ~~~~fP~~t~~d~~~~~~~ll~~--lgi~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~ia~ 194 (389)
T PRK06765 134 YGMDFPVVTILDFVRVQKELIKS--LGIARLHAVMGPSMGGMQAQEWAVHYPHMVERMIGVIG 194 (389)
T ss_pred cCCCCCcCcHHHHHHHHHHHHHH--cCCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEec
Confidence 23345688988888888876 4556775 999999999999999999999999998865
No 153
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.95 E-value=7.1e-08 Score=107.76 Aligned_cols=203 Identities=17% Similarity=0.204 Sum_probs=133.6
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecC---CceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQ---SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~---~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~ 230 (789)
..+...+|||||++|+-.+.+. .+.+|+- +...+.+. +....| ..+.|+|+|+.|+..+.+..
T Consensus 204 ~~v~~~~fs~d~~~l~s~s~D~-----tiriwd~~~~~~~~~~l~---gH~~~v------~~~~f~p~g~~i~Sgs~D~t 269 (456)
T KOG0266|consen 204 RGVSDVAFSPDGSYLLSGSDDK-----TLRIWDLKDDGRNLKTLK---GHSTYV------TSVAFSPDGNLLVSGSDDGT 269 (456)
T ss_pred cceeeeEECCCCcEEEEecCCc-----eEEEeeccCCCeEEEEec---CCCCce------EEEEecCCCCEEEEecCCCc
Confidence 4688999999999888766554 4566633 23333332 333333 79999999988888877776
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCce---EeccCCCCCC-ccceEEEeeCC
Q 003886 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV---QAVKGIPKSL-SVGQVVWAPLN 306 (789)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~---~~l~~~~~~~-~~~~~~wSPDg 306 (789)
.+ .|+....+....++.+........|.+|.....++..+..|.+||+.++.. ..+.+ .... .+..+.|+|+|
T Consensus 270 vr--iWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~fsp~~ 346 (456)
T KOG0266|consen 270 VR--IWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSG-AENSAPVTSVQFSPNG 346 (456)
T ss_pred EE--EEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccC-CCCCCceeEEEECCCC
Confidence 54 455544555566666766666677888877777777789999999999983 23321 1111 46899999999
Q ss_pred CCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCC---ccCcceecCCC
Q 003886 307 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS---SAFFPRFSPDG 383 (789)
Q Consensus 307 ~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~---~~~~p~~SpDG 383 (789)
+. |+-... +..|..+|+. ........+.+.. ....+..+++|
T Consensus 347 ~~----ll~~~~---------------d~~~~~w~l~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (456)
T KOG0266|consen 347 KY----LLSASL---------------DRTLKLWDLR----------------SGKSVGTYTGHSNLVRCIFSPTLSTGG 391 (456)
T ss_pred cE----EEEecC---------------CCeEEEEEcc----------------CCcceeeecccCCcceeEecccccCCC
Confidence 97 665541 2256666662 2223333333322 35567779999
Q ss_pred CEEEEEecCCCCCCCCccccceeEEeecCCCCCCCc
Q 003886 384 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS 419 (789)
Q Consensus 384 ~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~ 419 (789)
+.|+-.+.+. .+++||..++...+.
T Consensus 392 ~~i~sg~~d~-----------~v~~~~~~s~~~~~~ 416 (456)
T KOG0266|consen 392 KLIYSGSEDG-----------SVYVWDSSSGGILQR 416 (456)
T ss_pred CeEEEEeCCc-----------eEEEEeCCccchhhh
Confidence 9887666543 599999988666543
No 154
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.95 E-value=2.3e-08 Score=97.74 Aligned_cols=154 Identities=18% Similarity=0.317 Sum_probs=96.7
Q ss_pred ceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCC
Q 003886 212 GISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGI 291 (789)
Q Consensus 212 ~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~ 291 (789)
.+.|+|+|+.|+.....+... . ++.+. +...||.++..+.....+. +
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~----------~--------------------~ks~~--~~~~l~~~~~~~~~~~~i~-l 56 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDK----------S--------------------GKSYY--GEFELFYLNEKNIPVESIE-L 56 (194)
T ss_pred EEEecccCCEEEEEEEEeecc----------C--------------------cceEE--eeEEEEEEecCCCccceee-c
Confidence 688999999999977632110 0 01111 3468999988777766663 3
Q ss_pred CCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCC
Q 003886 292 PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESI 371 (789)
Q Consensus 292 ~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~ 371 (789)
.....+.+++|+|+|+. ++.+... .+..+..+|+ ++.....+. .
T Consensus 57 ~~~~~I~~~~WsP~g~~----favi~g~-------------~~~~v~lyd~-----------------~~~~i~~~~--~ 100 (194)
T PF08662_consen 57 KKEGPIHDVAWSPNGNE----FAVIYGS-------------MPAKVTLYDV-----------------KGKKIFSFG--T 100 (194)
T ss_pred cCCCceEEEEECcCCCE----EEEEEcc-------------CCcccEEEcC-----------------cccEeEeec--C
Confidence 33445899999999999 8776421 1225667776 433444443 2
Q ss_pred CccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCcc
Q 003886 372 SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW 451 (789)
Q Consensus 372 ~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~w 451 (789)
.......|||+|++|+...-.. ....|.+||....+........ ....+.|
T Consensus 101 ~~~n~i~wsP~G~~l~~~g~~n--------~~G~l~~wd~~~~~~i~~~~~~---------------------~~t~~~W 151 (194)
T PF08662_consen 101 QPRNTISWSPDGRFLVLAGFGN--------LNGDLEFWDVRKKKKISTFEHS---------------------DATDVEW 151 (194)
T ss_pred CCceEEEECCCCCEEEEEEccC--------CCcEEEEEECCCCEEeeccccC---------------------cEEEEEE
Confidence 3445689999999999876432 2246899998743332111000 1235689
Q ss_pred ccCCCEEEEEEE
Q 003886 452 LSDGCTMLLSSI 463 (789)
Q Consensus 452 s~Dg~~l~~~~~ 463 (789)
+|||++++..+.
T Consensus 152 sPdGr~~~ta~t 163 (194)
T PF08662_consen 152 SPDGRYLATATT 163 (194)
T ss_pred cCCCCEEEEEEe
Confidence 999998877654
No 155
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.95 E-value=9.3e-08 Score=99.03 Aligned_cols=270 Identities=15% Similarity=0.164 Sum_probs=147.5
Q ss_pred ecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeE
Q 003886 102 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 181 (789)
Q Consensus 102 ~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 181 (789)
-.++|||+.+++... ...+.++++... .....+.... ..+....|+|+++.|++....+ .
T Consensus 15 ~~~~~~~~~l~~~~~---------~g~i~i~~~~~~-~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~~~-----~ 74 (289)
T cd00200 15 VAFSPDGKLLATGSG---------DGTIKVWDLETG-ELLRTLKGHT-----GPVRDVAASADGTYLASGSSDK-----T 74 (289)
T ss_pred EEEcCCCCEEEEeec---------CcEEEEEEeeCC-CcEEEEecCC-----cceeEEEECCCCCEEEEEcCCC-----e
Confidence 345688888876532 335566665332 1122222222 3356889999999988876543 3
Q ss_pred EEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCccee
Q 003886 182 FELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 259 (789)
Q Consensus 182 ~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (789)
..+| ..++....+.... +. ...+.|+|+++.|+....+... ..|+............+........|
T Consensus 75 i~i~~~~~~~~~~~~~~~~---~~------i~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~~~~~~~i~~~~~ 143 (289)
T cd00200 75 IRLWDLETGECVRTLTGHT---SY------VSSVAFSPDGRILSSSSRDKTI--KVWDVETGKCLTTLRGHTDWVNSVAF 143 (289)
T ss_pred EEEEEcCcccceEEEeccC---Cc------EEEEEEcCCCCEEEEecCCCeE--EEEECCCcEEEEEeccCCCcEEEEEE
Confidence 4455 2222332222111 11 2789999997766555423221 12222211111111222333344556
Q ss_pred eCCcccccC-CccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceE
Q 003886 260 EEDWGETYA-GKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 338 (789)
Q Consensus 260 ~~d~g~~~~-~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~ 338 (789)
.++ +..+. +.....|.+||+.+++..... ......+..+.|+|+++. |++.+. ...|.
T Consensus 144 ~~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~----l~~~~~---------------~~~i~ 202 (289)
T cd00200 144 SPD-GTFVASSSQDGTIKLWDLRTGKCVATL-TGHTGEVNSVAFSPDGEK----LLSSSS---------------DGTIK 202 (289)
T ss_pred cCc-CCEEEEEcCCCcEEEEEccccccceeE-ecCccccceEEECCCcCE----EEEecC---------------CCcEE
Confidence 666 33333 333788999999877654431 222336778999999987 777762 23688
Q ss_pred EEecccccchhhhhhhhcCCCCCCC-eeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCC
Q 003886 339 AVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 417 (789)
Q Consensus 339 ~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~ 417 (789)
.+|+ ..+. ...+..+...+....|+||++.++..+.+ ..|++||+.++...
T Consensus 203 i~d~-----------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----------~~i~i~~~~~~~~~ 254 (289)
T cd00200 203 LWDL-----------------STGKCLGTLRGHENGVNSVAFSPDGYLLASGSED-----------GTIRVWDLRTGECV 254 (289)
T ss_pred EEEC-----------------CCCceecchhhcCCceEEEEEcCCCcEEEEEcCC-----------CcEEEEEcCCceeE
Confidence 8887 3333 33343455567889999997766544422 25899998764432
Q ss_pred CcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003886 418 SSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (789)
Q Consensus 418 ~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (789)
...... ...+..+.|+++++.| +++..++...+|
T Consensus 255 ~~~~~~-------------------~~~i~~~~~~~~~~~l-~~~~~d~~i~iw 288 (289)
T cd00200 255 QTLSGH-------------------TNSVTSLAWSPDGKRL-ASGSADGTIRIW 288 (289)
T ss_pred EEcccc-------------------CCcEEEEEECCCCCEE-EEecCCCeEEec
Confidence 111100 0124567899998755 455555555554
No 156
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.94 E-value=2.4e-07 Score=101.03 Aligned_cols=229 Identities=17% Similarity=0.239 Sum_probs=144.6
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecC-CceeEEE--ecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQ-SQLEKEF--HVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~-~~~~~~~--~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
.+...++||||+.||...+++ ...+|+. ...+-+| +...++ ..+.|+.+|+.|+..+-+
T Consensus 352 ~i~~l~YSpDgq~iaTG~eDg-----KVKvWn~~SgfC~vTFteHts~V----------t~v~f~~~g~~llssSLD--- 413 (893)
T KOG0291|consen 352 RITSLAYSPDGQLIATGAEDG-----KVKVWNTQSGFCFVTFTEHTSGV----------TAVQFTARGNVLLSSSLD--- 413 (893)
T ss_pred ceeeEEECCCCcEEEeccCCC-----cEEEEeccCceEEEEeccCCCce----------EEEEEEecCCEEEEeecC---
Confidence 577899999999999876654 4677843 2222222 333344 789999999988887655
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCc-eEeccCCCCCCccceEEEeeCCCCCc
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGLH 310 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~-~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (789)
..+..||+.... .+..+ .|.......++-.|.|.
T Consensus 414 -----------------------------------------GtVRAwDlkRYrNfRTft-~P~p~QfscvavD~sGe--- 448 (893)
T KOG0291|consen 414 -----------------------------------------GTVRAWDLKRYRNFRTFT-SPEPIQFSCVAVDPSGE--- 448 (893)
T ss_pred -----------------------------------------CeEEeeeecccceeeeec-CCCceeeeEEEEcCCCC---
Confidence 345667776554 33343 56666777777778787
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeecCCCCCccCcceecCCCCEEEEE
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFL 389 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~la~~ 389 (789)
|++.+.. ...+|+++++ .+|+ ...|..+.+.+...+|||+|..||..
T Consensus 449 --lV~AG~~-------------d~F~IfvWS~-----------------qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~ 496 (893)
T KOG0291|consen 449 --LVCAGAQ-------------DSFEIFVWSV-----------------QTGQLLDILSGHEGPVSGLSFSPDGSLLASG 496 (893)
T ss_pred --EEEeecc-------------ceEEEEEEEe-----------------ecCeeeehhcCCCCcceeeEEccccCeEEec
Confidence 7877732 2237999998 5555 56788889999999999999999887
Q ss_pred ecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEE
Q 003886 390 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 469 (789)
Q Consensus 390 s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~ 469 (789)
|.+. .+.+||.-...... +.+.+. ..+..+.|+|||+.|.+.+. +|...
T Consensus 497 SWDk-----------TVRiW~if~s~~~v------Etl~i~-------------sdvl~vsfrPdG~elaVaTl-dgqIt 545 (893)
T KOG0291|consen 497 SWDK-----------TVRIWDIFSSSGTV------ETLEIR-------------SDVLAVSFRPDGKELAVATL-DGQIT 545 (893)
T ss_pred cccc-----------eEEEEEeeccCcee------eeEeec-------------cceeEEEEcCCCCeEEEEEe-cceEE
Confidence 7664 47777764432111 111110 12346789999999977653 44444
Q ss_pred EEEEE-------------CCCCcE--EEecCCCC----CceeEEeeecCCEEEEEEeCC
Q 003886 470 IISVN-------------VSSGEL--LRITPAES----NFSWSLLTLDGDNIIAVSSSP 509 (789)
Q Consensus 470 l~~~d-------------l~tg~~--~~lt~~~~----~~~~~~~s~dg~~l~~~~ss~ 509 (789)
+|-.. +.+|+. -++|.... .+...-+|+||+.|+....+.
T Consensus 546 f~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn 604 (893)
T KOG0291|consen 546 FFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESN 604 (893)
T ss_pred EEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcc
Confidence 44322 222221 12333211 234456788999887665443
No 157
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=98.91 E-value=4.2e-07 Score=87.41 Aligned_cols=227 Identities=14% Similarity=0.192 Sum_probs=133.6
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
+-...|+|-..-++++...+ . -..+| ..++....+....+- -.+.|||||+++++...+
T Consensus 67 vdql~w~~~~~d~~atas~d-k---~ir~wd~r~~k~~~~i~~~~en----------i~i~wsp~g~~~~~~~kd----- 127 (313)
T KOG1407|consen 67 VDQLCWDPKHPDLFATASGD-K---TIRIWDIRSGKCTARIETKGEN----------INITWSPDGEYIAVGNKD----- 127 (313)
T ss_pred hhhheeCCCCCcceEEecCC-c---eEEEEEeccCcEEEEeeccCcc----------eEEEEcCCCCEEEEecCc-----
Confidence 55567888776666655443 1 34455 456666666654333 478999999999986433
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEE
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (789)
..|-.+|..+-++..- ..-...+....|.-++. +
T Consensus 128 ---------------------------------------D~it~id~r~~~~~~~--~~~~~e~ne~~w~~~nd-----~ 161 (313)
T KOG1407|consen 128 ---------------------------------------DRITFIDARTYKIVNE--EQFKFEVNEISWNNSND-----L 161 (313)
T ss_pred ---------------------------------------ccEEEEEecccceeeh--hcccceeeeeeecCCCC-----E
Confidence 4566677665554433 23334556788985554 7
Q ss_pred EEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCC
Q 003886 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (789)
Q Consensus 314 ~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~ 393 (789)
+|..+. ...+-++..+ .-..+..|..+...+.-..|+|||+++|..+.+.
T Consensus 162 Fflt~G--------------lG~v~ILsyp----------------sLkpv~si~AH~snCicI~f~p~GryfA~GsADA 211 (313)
T KOG1407|consen 162 FFLTNG--------------LGCVEILSYP----------------SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADA 211 (313)
T ss_pred EEEecC--------------CceEEEEecc----------------ccccccccccCCcceEEEEECCCCceEeeccccc
Confidence 777632 2234444432 3344566777777888999999999999877553
Q ss_pred CCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003886 394 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (789)
Q Consensus 394 ~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~ 473 (789)
.+-+||++. ...+ . +|+. .+-.+..+.||.||+.| .+++.+--..|-
T Consensus 212 -----------lvSLWD~~E--LiC~-----R-----------~isR-ldwpVRTlSFS~dg~~l-ASaSEDh~IDIA-- 258 (313)
T KOG1407|consen 212 -----------LVSLWDVDE--LICE-----R-----------CISR-LDWPVRTLSFSHDGRML-ASASEDHFIDIA-- 258 (313)
T ss_pred -----------eeeccChhH--hhhh-----e-----------eecc-ccCceEEEEeccCccee-eccCccceEEeE--
Confidence 244555432 2110 0 0100 00124567899999855 455544444444
Q ss_pred ECCCCcE-EEecCCCCCceeEEeeecCCEEEEEEeCCCC
Q 003886 474 NVSSGEL-LRITPAESNFSWSLLTLDGDNIIAVSSSPVD 511 (789)
Q Consensus 474 dl~tg~~-~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~ 511 (789)
++.||.. ..|.-... ...++|.|....|+|.+++...
T Consensus 259 ~vetGd~~~eI~~~~~-t~tVAWHPk~~LLAyA~ddk~~ 296 (313)
T KOG1407|consen 259 EVETGDRVWEIPCEGP-TFTVAWHPKRPLLAYACDDKDG 296 (313)
T ss_pred ecccCCeEEEeeccCC-ceeEEecCCCceeeEEecCCCC
Confidence 4446653 34433332 2345788887778888876554
No 158
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=98.90 E-value=1.5e-09 Score=125.11 Aligned_cols=132 Identities=22% Similarity=0.235 Sum_probs=86.7
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCch--hhHHHHHHHHHCCcEEEEEcCC-CCCCCCchhhccCCCC
Q 003886 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS--SYSKSLAFLSSVGYSLLIVNYR-GSLGFGEEALQSLPGK 646 (789)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~--~~~~~~~~la~~Gy~V~~~d~r-Gs~G~G~~~~~~~~~~ 646 (789)
+.|.+.| -++.|.......+.|++|+||||....... ........++..+++||.+||| |.-||-.......+
T Consensus 105 sEDCL~L--nI~~P~~~~~~~~lPV~v~ihGG~f~~G~~~~~~~~~~~~~~~~~vivVt~nYRlg~~Gfl~~~~~~~~-- 180 (535)
T PF00135_consen 105 SEDCLYL--NIYTPSNASSNSKLPVMVWIHGGGFMFGSGSFPPYDGASLAASKDVIVVTINYRLGAFGFLSLGDLDAP-- 180 (535)
T ss_dssp ES---EE--EEEEETSSSSTTSEEEEEEE--STTTSSCTTSGGGHTHHHHHHHTSEEEEE----HHHHH-BSSSTTSH--
T ss_pred CchHHHH--hhhhccccccccccceEEEeecccccCCCcccccccccccccCCCEEEEEecccccccccccccccccC--
Confidence 3455444 488888765555899999999988765444 2233445677899999999999 54444322111111
Q ss_pred CCcccHHHHHHHHHHHHHcC---CCCCccEEEEEcCccHHHHHHHHHhC--CCceeEEEEeCCc
Q 003886 647 VGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPL 705 (789)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~~~~~--p~~~~a~v~~~pv 705 (789)
.|..-+.|+..|++|+.++. .-|+++|.|+|+|.||..+..++... ..+|+.+|+.+|.
T Consensus 181 ~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs 244 (535)
T PF00135_consen 181 SGNYGLLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGS 244 (535)
T ss_dssp BSTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--
T ss_pred chhhhhhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccccccccccccc
Confidence 13444889999999999862 25999999999999999998877652 3589999999984
No 159
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=98.89 E-value=1.4e-09 Score=109.88 Aligned_cols=78 Identities=18% Similarity=0.354 Sum_probs=61.4
Q ss_pred cEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEE
Q 003886 622 YSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAA 701 (789)
Q Consensus 622 y~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~ 701 (789)
|.|+++|.||. |.+... ...........|+.+.++.+++. ...+++.++||||||.+++.++.++|++++++|+
T Consensus 1 f~vi~~d~rG~---g~S~~~-~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl 74 (230)
T PF00561_consen 1 FDVILFDLRGF---GYSSPH-WDPDFPDYTTDDLAADLEALREA--LGIKKINLVGHSMGGMLALEYAAQYPERVKKLVL 74 (230)
T ss_dssp EEEEEEECTTS---TTSSSC-CGSGSCTHCHHHHHHHHHHHHHH--HTTSSEEEEEETHHHHHHHHHHHHSGGGEEEEEE
T ss_pred CEEEEEeCCCC---CCCCCC-ccCCcccccHHHHHHHHHHHHHH--hCCCCeEEEEECCChHHHHHHHHHCchhhcCcEE
Confidence 68999999983 333210 01223345588999999999987 3455699999999999999999999999999999
Q ss_pred eCCc
Q 003886 702 RNPL 705 (789)
Q Consensus 702 ~~pv 705 (789)
.++.
T Consensus 75 ~~~~ 78 (230)
T PF00561_consen 75 ISPP 78 (230)
T ss_dssp ESES
T ss_pred Eeee
Confidence 9985
No 160
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=98.89 E-value=1.1e-07 Score=94.03 Aligned_cols=193 Identities=16% Similarity=0.177 Sum_probs=116.0
Q ss_pred eeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHH
Q 003886 574 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 653 (789)
Q Consensus 574 ~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~ 653 (789)
..+.+.+.-- ...+.+..+||-+||.|++ ...|......|.+.|++++.+||+| +|...... .... .-.
T Consensus 19 ~~~~a~y~D~--~~~gs~~gTVv~~hGsPGS--H~DFkYi~~~l~~~~iR~I~iN~PG---f~~t~~~~-~~~~---~n~ 87 (297)
T PF06342_consen 19 VTVQAVYEDS--LPSGSPLGTVVAFHGSPGS--HNDFKYIRPPLDEAGIRFIGINYPG---FGFTPGYP-DQQY---TNE 87 (297)
T ss_pred EEEEEEEEec--CCCCCCceeEEEecCCCCC--ccchhhhhhHHHHcCeEEEEeCCCC---CCCCCCCc-cccc---ChH
Confidence 4455544321 1134566799999999996 5677777889999999999999987 44432110 1111 234
Q ss_pred HHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccc-h----hh---------hhc---C--
Q 003886 654 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN-L----AL---------MVG---T-- 714 (789)
Q Consensus 654 D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~-~----~~---------~~~---~-- 714 (789)
+-...++.++++-.++ +++.++|||.|+-.|+.++..+| ..++++.+|+-- . .. ++. .
T Consensus 88 er~~~~~~ll~~l~i~-~~~i~~gHSrGcenal~la~~~~--~~g~~lin~~G~r~HkgIrp~~r~~~i~~l~~~lp~~~ 164 (297)
T PF06342_consen 88 ERQNFVNALLDELGIK-GKLIFLGHSRGCENALQLAVTHP--LHGLVLINPPGLRPHKGIRPLSRMETINYLYDLLPRFI 164 (297)
T ss_pred HHHHHHHHHHHHcCCC-CceEEEEeccchHHHHHHHhcCc--cceEEEecCCccccccCcCHHHHHHHHHHHHHHhhHHH
Confidence 5556666677764465 78999999999999999999885 568888877421 0 00 000 0
Q ss_pred CCCCcchhhhhccCccccccCCCCChhhHHHHH---hcC------ccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHC
Q 003886 715 TDIPDWCYVESYGSKGKDSFTESPSVEDLTRFH---SKS------PISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHI 785 (789)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~s------p~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l 785 (789)
.+...|.++..++. +.-.+ .+....++ ..+ -+..+.+-++|+|++.|.+|..|--+...++....
T Consensus 165 ~~~i~~~~y~~iG~---KV~~G---eeA~na~r~m~~~df~~q~~~I~~ln~~~ikvli~ygg~DhLIEeeI~~E~a~~f 238 (297)
T PF06342_consen 165 INAIMYFYYRMIGF---KVSDG---EEAINAMRSMQNCDFEEQKEYIDKLNKKPIKVLIAYGGKDHLIEEEISFEFAMKF 238 (297)
T ss_pred HHHHHHHHHHHhCe---eecCh---HHHHHHHHHHHhcCHHHHHHHHHHhccCCCcEEEEEcCcchhhHHHHHHHHHHHh
Confidence 00001222222221 10000 11111111 111 12334555689999999999999998888887665
Q ss_pred C
Q 003886 786 P 786 (789)
Q Consensus 786 ~ 786 (789)
+
T Consensus 239 ~ 239 (297)
T PF06342_consen 239 K 239 (297)
T ss_pred C
Confidence 4
No 161
>PTZ00421 coronin; Provisional
Probab=98.88 E-value=3.3e-07 Score=102.25 Aligned_cols=200 Identities=13% Similarity=0.079 Sum_probs=115.3
Q ss_pred cceeecC-CCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCc-----
Q 003886 211 EGISWNS-DETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE----- 284 (789)
Q Consensus 211 ~~~~wSp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~----- 284 (789)
..+.|+| |++.||..+.+ ..|.+||+.++.
T Consensus 79 ~~v~fsP~d~~~LaSgS~D--------------------------------------------gtIkIWdi~~~~~~~~~ 114 (493)
T PTZ00421 79 IDVAFNPFDPQKLFTASED--------------------------------------------GTIMGWGIPEEGLTQNI 114 (493)
T ss_pred EEEEEcCCCCCEEEEEeCC--------------------------------------------CEEEEEecCCCcccccc
Confidence 7999999 88888876544 457777776542
Q ss_pred ---eEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCC
Q 003886 285 ---VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED 361 (789)
Q Consensus 285 ---~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 361 (789)
...+ ......+..+.|+|++.. +++++. .+..|.++|+ .+
T Consensus 115 ~~~l~~L--~gH~~~V~~l~f~P~~~~----iLaSgs--------------~DgtVrIWDl-----------------~t 157 (493)
T PTZ00421 115 SDPIVHL--QGHTKKVGIVSFHPSAMN----VLASAG--------------ADMVVNVWDV-----------------ER 157 (493)
T ss_pred CcceEEe--cCCCCcEEEEEeCcCCCC----EEEEEe--------------CCCEEEEEEC-----------------CC
Confidence 2223 122345778999999866 555542 1236888887 33
Q ss_pred CC-eeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCcc
Q 003886 362 LP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPG 440 (789)
Q Consensus 362 ~~-~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g 440 (789)
+. ...+..+...+...+|+|||+.|+..+.+. .|.+||+.++.... .+... . .
T Consensus 158 g~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg-----------~IrIwD~rsg~~v~---------tl~~H-~-~---- 211 (493)
T PTZ00421 158 GKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDK-----------KLNIIDPRDGTIVS---------SVEAH-A-S---- 211 (493)
T ss_pred CeEEEEEcCCCCceEEEEEECCCCEEEEecCCC-----------EEEEEECCCCcEEE---------EEecC-C-C----
Confidence 33 445665666788999999999887766443 58999987754311 00000 0 0
Q ss_pred ccccCCCCCccccCCCEEEEEEEe-CCeEEEEEEECCCCc-E-EEecCCC-CCceeEEeeecCCEEEEEEeCCCCCCeEE
Q 003886 441 LYSSSILSNPWLSDGCTMLLSSIW-GSSQVIISVNVSSGE-L-LRITPAE-SNFSWSLLTLDGDNIIAVSSSPVDVPQVK 516 (789)
Q Consensus 441 ~~~~~~~~~~ws~Dg~~l~~~~~~-~~~~~l~~~dl~tg~-~-~~lt~~~-~~~~~~~~s~dg~~l~~~~ss~~~p~~i~ 516 (789)
.......|.+++..|+..+.. .....|..+|+.+.+ . ....... .......++++++.++....+.. .|.
T Consensus 212 ---~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg---~Ir 285 (493)
T PTZ00421 212 ---AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEG---NIR 285 (493)
T ss_pred ---CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCC---eEE
Confidence 011245688888766544322 123345556665432 2 2221111 12233467788886665543333 266
Q ss_pred EEeeccc
Q 003886 517 YGYFVDK 523 (789)
Q Consensus 517 ~~~~~~~ 523 (789)
++++.++
T Consensus 286 iwdl~~~ 292 (493)
T PTZ00421 286 CFELMNE 292 (493)
T ss_pred EEEeeCC
Confidence 6666543
No 162
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1.1e-06 Score=87.11 Aligned_cols=252 Identities=13% Similarity=0.095 Sum_probs=134.5
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecC-CCccccccCCCcccceeecCCCCEEEEEeecCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~-~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~ 230 (789)
+.+.+..||++|..|+..++.+ .+.++ ..|...+.+... -++ .-+.|-.....+.+.+....
T Consensus 15 ~~i~sl~fs~~G~~litss~dD-----sl~LYd~~~g~~~~ti~skkyG~----------~~~~Fth~~~~~i~sStk~d 79 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSEDD-----SLRLYDSLSGKQVKTINSKKYGV----------DLACFTHHSNTVIHSSTKED 79 (311)
T ss_pred CceeEEEecCCCCEEEEecCCC-----eEEEEEcCCCceeeEeecccccc----------cEEEEecCCceEEEccCCCC
Confidence 3477899999999999865554 23344 345555555442 233 34566666666666655332
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCc
Q 003886 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 310 (789)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (789)
....+.....++-..-++.+..-+....-.|-...-+++..+..|.+||+...+.+-+. . .....-.+|.|+|
T Consensus 80 ~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l--~-~~~~pi~AfDp~G---- 152 (311)
T KOG1446|consen 80 DTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL--N-LSGRPIAAFDPEG---- 152 (311)
T ss_pred CceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE--e-cCCCcceeECCCC----
Confidence 22222222222222222333222222222332222234445678999999876655442 1 1122346888987
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeee--cC-CCCCccCcceecCCCCEEE
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN--LT-ESISSAFFPRFSPDGKFLV 387 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--Lt-~~~~~~~~p~~SpDG~~la 387 (789)
|+|+.-.+ ...|.++|+... +.+..+. ++ +.........||||||.|+
T Consensus 153 --LifA~~~~-------------~~~IkLyD~Rs~--------------dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iL 203 (311)
T KOG1446|consen 153 --LIFALANG-------------SELIKLYDLRSF--------------DKGPFTTFSITDNDEAEWTDLEFSPDGKSIL 203 (311)
T ss_pred --cEEEEecC-------------CCeEEEEEeccc--------------CCCCceeEccCCCCccceeeeEEcCCCCEEE
Confidence 55544211 115667776421 2333332 23 2234567889999999998
Q ss_pred EEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCe
Q 003886 388 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 467 (789)
Q Consensus 388 ~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~ 467 (789)
...+.. .++++|.-+|..+.. . ...+....+| ....|+|||+.+ +.+..+|+
T Consensus 204 lsT~~s-----------~~~~lDAf~G~~~~t---f------s~~~~~~~~~-------~~a~ftPds~Fv-l~gs~dg~ 255 (311)
T KOG1446|consen 204 LSTNAS-----------FIYLLDAFDGTVKST---F------SGYPNAGNLP-------LSATFTPDSKFV-LSGSDDGT 255 (311)
T ss_pred EEeCCC-----------cEEEEEccCCcEeee---E------eeccCCCCcc-------eeEEECCCCcEE-EEecCCCc
Confidence 777543 588898777653211 0 0011111111 366899999854 66666666
Q ss_pred EEEEEEECCCCcEEEecCC
Q 003886 468 QVIISVNVSSGELLRITPA 486 (789)
Q Consensus 468 ~~l~~~dl~tg~~~~lt~~ 486 (789)
..+| ++++|+....+.+
T Consensus 256 i~vw--~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 256 IHVW--NLETGKKVAVLRG 272 (311)
T ss_pred EEEE--EcCCCcEeeEecC
Confidence 5555 5568876655544
No 163
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.87 E-value=2.5e-07 Score=105.09 Aligned_cols=178 Identities=12% Similarity=0.077 Sum_probs=110.3
Q ss_pred cceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccC
Q 003886 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (789)
Q Consensus 211 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (789)
..+..||||+++||+....... .....+||+++. +++.+.+
T Consensus 353 sspaiSpdG~~vA~v~~~~~~~------------------------------------~d~~s~Lwv~~~-gg~~~~l-- 393 (591)
T PRK13616 353 TSAALSRSGRQVAAVVTLGRGA------------------------------------PDPASSLWVGPL-GGVAVQV-- 393 (591)
T ss_pred ccceECCCCCEEEEEEeecCCC------------------------------------CCcceEEEEEeC-CCcceee--
Confidence 7899999999999987532100 013468999997 4455666
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCC
Q 003886 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 370 (789)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~ 370 (789)
+.+. ....|.|||||+. |+|+.+... ..+.........||.+++ ++++.++ ..
T Consensus 394 t~g~-~~t~PsWspDG~~----lw~v~dg~~---~~~v~~~~~~gql~~~~v-----------------d~ge~~~--~~ 446 (591)
T PRK13616 394 LEGH-SLTRPSWSLDADA----VWVVVDGNT---VVRVIRDPATGQLARTPV-----------------DASAVAS--RV 446 (591)
T ss_pred ecCC-CCCCceECCCCCc----eEEEecCcc---eEEEeccCCCceEEEEec-----------------cCchhhh--cc
Confidence 3444 3789999999999 999874321 111111223457888887 5566554 33
Q ss_pred CCccCcceecCCCCEEEEEecCCCCCCCCccccceeEE---eecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCC
Q 003886 371 ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHR---IDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSIL 447 (789)
Q Consensus 371 ~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~---~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~ 447 (789)
.+.+..++|||||++|+|+... +|++ ..-..|. ..++.. ..+.. . ......
T Consensus 447 ~g~Issl~wSpDG~RiA~i~~g------------~v~Va~Vvr~~~G~-~~l~~~-~~l~~--------~----l~~~~~ 500 (591)
T PRK13616 447 PGPISELQLSRDGVRAAMIIGG------------KVYLAVVEQTEDGQ-YALTNP-REVGP--------G----LGDTAV 500 (591)
T ss_pred CCCcCeEEECCCCCEEEEEECC------------EEEEEEEEeCCCCc-eeeccc-EEeec--------c----cCCccc
Confidence 4568999999999999999821 4666 3333333 323211 11111 0 001124
Q ss_pred CCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEE
Q 003886 448 SNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 482 (789)
Q Consensus 448 ~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~ 482 (789)
.+.|..|++ |++. ...+...+|.+++++...+.
T Consensus 501 ~l~W~~~~~-L~V~-~~~~~~~v~~v~vDG~~~~~ 533 (591)
T PRK13616 501 SLDWRTGDS-LVVG-RSDPEHPVWYVNLDGSNSDA 533 (591)
T ss_pred cceEecCCE-EEEE-ecCCCCceEEEecCCccccc
Confidence 678999987 5544 33556678999997555443
No 164
>PTZ00421 coronin; Provisional
Probab=98.86 E-value=1e-06 Score=98.39 Aligned_cols=212 Identities=13% Similarity=0.095 Sum_probs=120.2
Q ss_pred cccEEEEeCC-CCCeEEEEecCCCCCCeEEEEec---CCce----eEEEecCCCccccccCCCcccceeecCCCC-EEEE
Q 003886 154 TGASAVVPSP-SGSKLLVVRNPENESPIQFELWS---QSQL----EKEFHVPQTVHGSVYADGWFEGISWNSDET-LIAY 224 (789)
Q Consensus 154 ~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~i~~---~~~~----~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~-~la~ 224 (789)
+.+...+||| |++.||..+.+. .+.+|+ .+.. ..+..+ .+....| ..+.|+|++. .|+.
T Consensus 76 ~~V~~v~fsP~d~~~LaSgS~Dg-----tIkIWdi~~~~~~~~~~~~l~~L-~gH~~~V------~~l~f~P~~~~iLaS 143 (493)
T PTZ00421 76 GPIIDVAFNPFDPQKLFTASEDG-----TIMGWGIPEEGLTQNISDPIVHL-QGHTKKV------GIVSFHPSAMNVLAS 143 (493)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCC-----EEEEEecCCCccccccCcceEEe-cCCCCcE------EEEEeCcCCCCEEEE
Confidence 4588999999 888888776543 455562 2111 111122 1222233 7899999875 4544
Q ss_pred EeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEee
Q 003886 225 VAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP 304 (789)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSP 304 (789)
.+. +..|.+||+.+++..... ......+..++|+|
T Consensus 144 gs~--------------------------------------------DgtVrIWDl~tg~~~~~l-~~h~~~V~sla~sp 178 (493)
T PTZ00421 144 AGA--------------------------------------------DMVVNVWDVERGKAVEVI-KCHSDQITSLEWNL 178 (493)
T ss_pred EeC--------------------------------------------CCEEEEEECCCCeEEEEE-cCCCCceEEEEEEC
Confidence 322 257899999988754431 12234578899999
Q ss_pred CCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCc-cCcceecCCC
Q 003886 305 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISS-AFFPRFSPDG 383 (789)
Q Consensus 305 Dg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~-~~~p~~SpDG 383 (789)
||+. |+..+ .+..|.++|+. .+.....+..+.+. .....|++++
T Consensus 179 dG~l----Latgs---------------~Dg~IrIwD~r----------------sg~~v~tl~~H~~~~~~~~~w~~~~ 223 (493)
T PTZ00421 179 DGSL----LCTTS---------------KDKKLNIIDPR----------------DGTIVSSVEAHASAKSQRCLWAKRK 223 (493)
T ss_pred CCCE----EEEec---------------CCCEEEEEECC----------------CCcEEEEEecCCCCcceEEEEcCCC
Confidence 9986 66555 23368888872 22233445444332 3457899998
Q ss_pred CEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEE
Q 003886 384 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 463 (789)
Q Consensus 384 ~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~ 463 (789)
..|+...... ....+|.+||+...... +.. ..+ ... ..+..+.|++|++.|+..+.
T Consensus 224 ~~ivt~G~s~-------s~Dr~VklWDlr~~~~p-~~~-----~~~------d~~-----~~~~~~~~d~d~~~L~lggk 279 (493)
T PTZ00421 224 DLIITLGCSK-------SQQRQIMLWDTRKMASP-YST-----VDL------DQS-----SALFIPFFDEDTNLLYIGSK 279 (493)
T ss_pred CeEEEEecCC-------CCCCeEEEEeCCCCCCc-eeE-----ecc------CCC-----CceEEEEEcCCCCEEEEEEe
Confidence 8876554321 12346999998653321 110 000 000 01223468899997766544
Q ss_pred eCCeEEEEEEECCCCcEEEe
Q 003886 464 WGSSQVIISVNVSSGELLRI 483 (789)
Q Consensus 464 ~~~~~~l~~~dl~tg~~~~l 483 (789)
.++...+| |+.++++...
T Consensus 280 gDg~Iriw--dl~~~~~~~~ 297 (493)
T PTZ00421 280 GEGNIRCF--ELMNERLTFC 297 (493)
T ss_pred CCCeEEEE--EeeCCceEEE
Confidence 45555555 5556665443
No 165
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=98.84 E-value=5.6e-07 Score=99.11 Aligned_cols=198 Identities=14% Similarity=0.075 Sum_probs=137.0
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
+.+...+||||-++|+-.+++. -..+|. +.....+.. . +...+| ..+.|+|-|-+.|..+.+.+.+
T Consensus 452 GPVyg~sFsPd~rfLlScSED~-----svRLWsl~t~s~~V~y-~-GH~~PV------wdV~F~P~GyYFatas~D~tAr 518 (707)
T KOG0263|consen 452 GPVYGCSFSPDRRFLLSCSEDS-----SVRLWSLDTWSCLVIY-K-GHLAPV------WDVQFAPRGYYFATASHDQTAR 518 (707)
T ss_pred CceeeeeecccccceeeccCCc-----ceeeeecccceeEEEe-c-CCCcce------eeEEecCCceEEEecCCCceee
Confidence 4588889999999998776643 345662 222222222 2 222233 6788999997777766665543
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccE
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 312 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~ 312 (789)
.|..........+.++..-.+-..|.|+-.-..++..+..+.+||+.+|..+++. ......+..+++||+|++
T Consensus 519 --LWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF-~GH~~~V~al~~Sp~Gr~---- 591 (707)
T KOG0263|consen 519 --LWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF-TGHKGPVTALAFSPCGRY---- 591 (707)
T ss_pred --eeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEe-cCCCCceEEEEEcCCCce----
Confidence 5554444555555666666666778887666667777889999999999888873 223447889999999998
Q ss_pred EEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecC
Q 003886 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (789)
Q Consensus 313 l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~ 392 (789)
|+..+. ...|.++|+. .+..+.++-.+.+.+.+.+||.||..||..+.+
T Consensus 592 LaSg~e---------------d~~I~iWDl~----------------~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~D 640 (707)
T KOG0263|consen 592 LASGDE---------------DGLIKIWDLA----------------NGSLVKQLKGHTGTIYSLSFSRDGNVLASGGAD 640 (707)
T ss_pred Eeeccc---------------CCcEEEEEcC----------------CCcchhhhhcccCceeEEEEecCCCEEEecCCC
Confidence 887652 2368888882 334556777778889999999999988766643
Q ss_pred CCCCCCCccccceeEEeecCC
Q 003886 393 SSVDSGAHSATDSLHRIDWPT 413 (789)
Q Consensus 393 ~~~~~g~~~~~~~L~~~d~~~ 413 (789)
+++.+||+..
T Consensus 641 -----------nsV~lWD~~~ 650 (707)
T KOG0263|consen 641 -----------NSVRLWDLTK 650 (707)
T ss_pred -----------CeEEEEEchh
Confidence 4688888754
No 166
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=98.84 E-value=1.1e-08 Score=94.70 Aligned_cols=168 Identities=13% Similarity=0.092 Sum_probs=117.5
Q ss_pred CCCcEEEEEcCCCCCCCchhh-HHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCC
Q 003886 590 SCDPLIVVLHGGPHSVSLSSY-SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~-~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (789)
...|+.||+|||.+....... ......+..+||+|..++|--++ ....-.+.+.++...++|+++.- -
T Consensus 65 ~~~klfIfIHGGYW~~g~rk~clsiv~~a~~~gY~vasvgY~l~~----------q~htL~qt~~~~~~gv~filk~~-~ 133 (270)
T KOG4627|consen 65 NQAKLFIFIHGGYWQEGDRKMCLSIVGPAVRRGYRVASVGYNLCP----------QVHTLEQTMTQFTHGVNFILKYT-E 133 (270)
T ss_pred CCccEEEEEecchhhcCchhcccchhhhhhhcCeEEEEeccCcCc----------ccccHHHHHHHHHHHHHHHHHhc-c
Confidence 456999999998875433322 12345677899999999984321 12233556889999999998863 2
Q ss_pred CCccEEEEEcCccHHHHHHHHHh-CCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHHH
Q 003886 669 NPSKVTVVGGSHGGFLTTHLIGQ-APDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFH 747 (789)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~~~~-~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (789)
..+.+.+-|||.|+.+++.+.++ +..|+.++++.+|++++..+.......+.. ... + ...
T Consensus 134 n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~l~EL~~te~g~dlg---------------Lt~-~---~ae 194 (270)
T KOG4627|consen 134 NTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYDLRELSNTESGNDLG---------------LTE-R---NAE 194 (270)
T ss_pred cceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhhHHHHhCCccccccC---------------ccc-c---hhh
Confidence 45668888999999999988875 445899999999999987775443221111 000 1 112
Q ss_pred hcCcc-ccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 748 SKSPI-SHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 748 ~~sp~-~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
..|+. .....++.|+|++.++.|.---++|.+.+.+.+++
T Consensus 195 ~~Scdl~~~~~v~~~ilVv~~~~espklieQnrdf~~q~~~ 235 (270)
T KOG4627|consen 195 SVSCDLWEYTDVTVWILVVAAEHESPKLIEQNRDFADQLRK 235 (270)
T ss_pred hcCccHHHhcCceeeeeEeeecccCcHHHHhhhhHHHHhhh
Confidence 23332 23677889999999999998888999999888654
No 167
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.84 E-value=1.2e-07 Score=97.93 Aligned_cols=245 Identities=13% Similarity=0.154 Sum_probs=145.2
Q ss_pred CCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 003886 105 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 184 (789)
Q Consensus 105 spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i 184 (789)
.|+|+.++|+.. .+++++.+++.+. +..++. .+...+.........||||++||+....+ .|.++
T Consensus 266 ~p~G~~~i~~s~--------rrky~ysyDle~a--k~~k~~-~~~g~e~~~~e~FeVShd~~fia~~G~~G----~I~lL 330 (514)
T KOG2055|consen 266 APNGHSVIFTSG--------RRKYLYSYDLETA--KVTKLK-PPYGVEEKSMERFEVSHDSNFIAIAGNNG----HIHLL 330 (514)
T ss_pred cCCCceEEEecc--------cceEEEEeecccc--cccccc-CCCCcccchhheeEecCCCCeEEEcccCc----eEEee
Confidence 389997777643 4678999988443 222221 11111123456788999999999975543 45555
Q ss_pred e-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCc
Q 003886 185 W-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDW 263 (789)
Q Consensus 185 ~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 263 (789)
- .+++...-+...+.+ .++.||.||+.|+.+..
T Consensus 331 hakT~eli~s~KieG~v----------~~~~fsSdsk~l~~~~~------------------------------------ 364 (514)
T KOG2055|consen 331 HAKTKELITSFKIEGVV----------SDFTFSSDSKELLASGG------------------------------------ 364 (514)
T ss_pred hhhhhhhhheeeeccEE----------eeEEEecCCcEEEEEcC------------------------------------
Confidence 5 455544444433333 89999999988776522
Q ss_pred ccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecc
Q 003886 264 GETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVS 343 (789)
Q Consensus 264 g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 343 (789)
..+||+||+....+...---.+.++..+.+.|++|.+ ++..+.+. + ..||..+-.
T Consensus 365 --------~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~y----lA~GS~~G------i-------VNIYd~~s~ 419 (514)
T KOG2055|consen 365 --------TGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSY----LATGSDSG------I-------VNIYDGNSC 419 (514)
T ss_pred --------CceEEEEecCCcceEEEEeecCccceeeeeecCCCce----EEeccCcc------e-------EEEeccchh
Confidence 3589999998876554311234456678889999998 77766322 1 135543321
Q ss_pred cccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCC-Ccccc
Q 003886 344 LYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF-SSLEK 422 (789)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~-~~t~~ 422 (789)
.. ..+...+.++.+-...+.+.+|+||++.||..|... .+.|.+..+++-..- +....
T Consensus 420 ~~------------s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~---------knalrLVHvPS~TVFsNfP~~ 478 (514)
T KOG2055|consen 420 FA------------STNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVK---------KNALRLVHVPSCTVFSNFPTS 478 (514)
T ss_pred hc------------cCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhcc---------ccceEEEeccceeeeccCCCC
Confidence 00 001222333333344578999999999999888654 245666666552110 00000
Q ss_pred eeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEE
Q 003886 423 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 474 (789)
Q Consensus 423 ~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~d 474 (789)
... ...+..+.|||.|.++. .++..|+..||.+.
T Consensus 479 n~~-----------------vg~vtc~aFSP~sG~lA-vGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 479 NTK-----------------VGHVTCMAFSPNSGYLA-VGNEAGRVHLFKLH 512 (514)
T ss_pred CCc-----------------ccceEEEEecCCCceEE-eecCCCceeeEeec
Confidence 000 01234678999998664 45677888888763
No 168
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.84 E-value=1.1e-07 Score=107.98 Aligned_cols=153 Identities=19% Similarity=0.247 Sum_probs=92.7
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCc--eeEEEecCCCccc---c----cc--CCCcccceeecCCCCEE
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ--LEKEFHVPQTVHG---S----VY--ADGWFEGISWNSDETLI 222 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~g---~----v~--~d~~~~~~~wSpDg~~l 222 (789)
+.+..+.|||||++||+.++.. +..+|.... ...++...++.+. + ++ -+..+.++.||||+..+
T Consensus 70 ~sv~CVR~S~dG~~lAsGSDD~-----~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~l 144 (942)
T KOG0973|consen 70 GSVNCVRFSPDGSYLASGSDDR-----LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLL 144 (942)
T ss_pred CceeEEEECCCCCeEeeccCcc-----eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEE
Confidence 4578899999999999987663 777772110 0000000000000 0 00 12234799999999999
Q ss_pred EEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEE
Q 003886 223 AYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVW 302 (789)
Q Consensus 223 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~w 302 (789)
|..+.+ +.|.+||..+.+...+. ......+..++|
T Consensus 145 vS~s~D--------------------------------------------nsViiwn~~tF~~~~vl-~~H~s~VKGvs~ 179 (942)
T KOG0973|consen 145 VSVSLD--------------------------------------------NSVIIWNAKTFELLKVL-RGHQSLVKGVSW 179 (942)
T ss_pred EEeccc--------------------------------------------ceEEEEccccceeeeee-ecccccccceEE
Confidence 887544 56888888777544431 223346789999
Q ss_pred eeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCC------CccCc
Q 003886 303 APLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESI------SSAFF 376 (789)
Q Consensus 303 SPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~------~~~~~ 376 (789)
.|-|++ ++..+.+ |...+|+.. +-+-.+.+++.. .....
T Consensus 180 DP~Gky----~ASqsdD-------------rtikvwrt~------------------dw~i~k~It~pf~~~~~~T~f~R 224 (942)
T KOG0973|consen 180 DPIGKY----FASQSDD-------------RTLKVWRTS------------------DWGIEKSITKPFEESPLTTFFLR 224 (942)
T ss_pred CCccCe----eeeecCC-------------ceEEEEEcc------------------cceeeEeeccchhhCCCcceeee
Confidence 999998 7766632 222344432 334445555432 23678
Q ss_pred ceecCCCCEEEEEec
Q 003886 377 PRFSPDGKFLVFLSA 391 (789)
Q Consensus 377 p~~SpDG~~la~~s~ 391 (789)
+.|||||++|+..-.
T Consensus 225 lSWSPDG~~las~nA 239 (942)
T KOG0973|consen 225 LSWSPDGHHLASPNA 239 (942)
T ss_pred cccCCCcCeecchhh
Confidence 999999999976543
No 169
>KOG3101 consensus Esterase D [General function prediction only]
Probab=98.83 E-value=7.5e-09 Score=96.19 Aligned_cols=181 Identities=17% Similarity=0.223 Sum_probs=111.1
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhH--HHHH-HHHHCCcEEEEEcC--CCCCCCCchhhccC-C--C-
Q 003886 575 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS--KSLA-FLSSVGYSLLIVNY--RGSLGFGEEALQSL-P--G- 645 (789)
Q Consensus 575 ~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~--~~~~-~la~~Gy~V~~~d~--rGs~G~G~~~~~~~-~--~- 645 (789)
.+.--+|+|+.+..+++.|++.++.|-... ...|. ..++ .....|++|+.||- ||..--|++..-.. . +
T Consensus 27 ~Mtf~vylPp~a~~~k~~P~lf~LSGLTCT--~~Nfi~Ksg~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG~GAGF 104 (283)
T KOG3101|consen 27 SMTFGVYLPPDAPRGKRCPVLFYLSGLTCT--HENFIEKSGFQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFGQGAGF 104 (283)
T ss_pred ceEEEEecCCCcccCCcCceEEEecCCccc--chhhHhhhhHHHhHhhcCeEEECCCCCCCccccCCCcccccccCCcee
Confidence 355557888888788889999999995443 33333 2334 45578999999995 45321121110000 0 0
Q ss_pred --CCCcccHHHHHHHHHHHHHc---------CCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcC
Q 003886 646 --KVGSQDVNDVLTAIDHVIDM---------GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT 714 (789)
Q Consensus 646 --~~~~~~~~D~~~~i~~l~~~---------~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~ 714 (789)
+-.......-.+..+|+.++ -.+|+.+++|+||||||+-|+-.+.+.|.+++.+.+.+|+++...-
T Consensus 105 YvnAt~epw~~~yrMYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~NP~~c--- 181 (283)
T KOG3101|consen 105 YVNATQEPWAKHYRMYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICNPINC--- 181 (283)
T ss_pred EEecccchHhhhhhHHHHHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccceeccccccCcccC---
Confidence 00011122223333333321 2379999999999999999999999999999999999999985332
Q ss_pred CCCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCC---CCCEEEEEeCCCCCCC
Q 003886 715 TDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV---KTPTIFLLGAQDLRVP 774 (789)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i---~~P~Lii~G~~D~~vp 774 (789)
.|. .....-|.+ ++...|..+++...++++ ..-+||=+|+.|...+
T Consensus 182 ----pWG------qKAf~gYLG----~~ka~W~~yDat~lik~y~~~~~~ilIdqG~~D~Fl~ 230 (283)
T KOG3101|consen 182 ----PWG------QKAFTGYLG----DNKAQWEAYDATHLIKNYRGVGDDILIDQGAADNFLA 230 (283)
T ss_pred ----cch------HHHhhcccC----CChHHHhhcchHHHHHhcCCCCccEEEecCccchhhh
Confidence 122 111222333 344556666665544444 4558888999998765
No 170
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=98.81 E-value=1.5e-07 Score=90.54 Aligned_cols=154 Identities=17% Similarity=0.213 Sum_probs=91.9
Q ss_pred EEEEEcCCCCCCCchhhHHHHHHHHHCCc--EEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCc
Q 003886 594 LIVVLHGGPHSVSLSSYSKSLAFLSSVGY--SLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (789)
Q Consensus 594 ~vv~~HGg~~~~~~~~~~~~~~~la~~Gy--~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (789)
+|+++||...+..+.-.....+++++.|. .+..+|+.- ..++..+.++.++++ ..++
T Consensus 1 ~ilYlHGF~Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~~-------------------~p~~a~~~l~~~i~~--~~~~ 59 (187)
T PF05728_consen 1 MILYLHGFNSSPQSFKAQALKQYFAEHGPDIQYPCPDLPP-------------------FPEEAIAQLEQLIEE--LKPE 59 (187)
T ss_pred CeEEecCCCCCCCCHHHHHHHHHHHHhCCCceEECCCCCc-------------------CHHHHHHHHHHHHHh--CCCC
Confidence 48999996665444444445667887764 455555431 134555666666665 3445
Q ss_pred cEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhh----cCCCCCcchhhhhccCccccccCCCCChhhHHHHH
Q 003886 672 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV----GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFH 747 (789)
Q Consensus 672 rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (789)
.++|+|.|+||+.|.+++.+++ +++ |++||...+...+ +......|. +.+.- ........+
T Consensus 60 ~~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~p~~~l~~~iG~~~~~~~~----------e~~~~--~~~~~~~l~ 124 (187)
T PF05728_consen 60 NVVLIGSSLGGFYATYLAERYG--LPA-VLINPAVRPYELLQDYIGEQTNPYTG----------ESYEL--TEEHIEELK 124 (187)
T ss_pred CeEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCCHHHHHHHhhCccccCCCC----------cccee--chHhhhhcc
Confidence 5999999999999999998874 555 8889887653332 111111110 00100 001111111
Q ss_pred hcCcccc-CCCCCCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 748 SKSPISH-ISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 748 ~~sp~~~-~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
.+.. ...-..++++++++.|+++++..+...|+..+
T Consensus 125 ---~l~~~~~~~~~~~lvll~~~DEvLd~~~a~~~~~~~~ 161 (187)
T PF05728_consen 125 ---ALEVPYPTNPERYLVLLQTGDEVLDYREAVAKYRGCA 161 (187)
T ss_pred ---eEeccccCCCccEEEEEecCCcccCHHHHHHHhcCce
Confidence 1111 12234689999999999999999988876543
No 171
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=98.81 E-value=1.5e-08 Score=104.34 Aligned_cols=135 Identities=16% Similarity=0.151 Sum_probs=86.1
Q ss_pred CeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhH--HHHHHHHHCC----cEEEEEcCCCCCCCCchhh------
Q 003886 573 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS--KSLAFLSSVG----YSLLIVNYRGSLGFGEEAL------ 640 (789)
Q Consensus 573 g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~--~~~~~la~~G----y~V~~~d~rGs~G~G~~~~------ 640 (789)
|.....++++|+++.+.+++|+|+++||. ..+...+. ..+..+++.| .++++++..+.......+.
T Consensus 5 g~~~~~~VylP~~y~~~~~~PvlylldG~--~~~~~~~~~~~~~~~~~~~~~~~~~iiV~i~~~~~~~~~~~~~~~~~~~ 82 (251)
T PF00756_consen 5 GRDRRVWVYLPPGYDPSKPYPVLYLLDGQ--SGWFRNGNAQEALDRLIAEGKIPPMIIVVIPNGDNSRFYTSWYLPAGSS 82 (251)
T ss_dssp TEEEEEEEEECTTGGTTTTEEEEEEESHT--THHHHHHHHHHHHHHHHHHHTSEEEEEEEEESSSTSSTTSBTTSSBCTT
T ss_pred CCeEEEEEEECCCCCCCCCCEEEEEccCC--ccccccchHHHHHHHHHHhCCCCceEEEEEecccccccccccccccccc
Confidence 45678889999998888999999999995 11111121 2233344443 5666666544221111111
Q ss_pred ccCCCCCCcccHHHHH--HHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchh
Q 003886 641 QSLPGKVGSQDVNDVL--TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 709 (789)
Q Consensus 641 ~~~~~~~~~~~~~D~~--~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~ 709 (789)
.......+.....+.+ +.+.++.++-.++.++.+|+|+|+||+.|+.++.++|+.|.++++.+|..+..
T Consensus 83 ~~~~~~~~~~~~~~~l~~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~~~~ 153 (251)
T PF00756_consen 83 RRADDSGGGDAYETFLTEELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGALDPS 153 (251)
T ss_dssp CBCTSTTTHHHHHHHHHTHHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEESETT
T ss_pred cccccCCCCcccceehhccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCcccccc
Confidence 0111112222233322 45666666655666669999999999999999999999999999999987653
No 172
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=98.80 E-value=7.1e-08 Score=102.92 Aligned_cols=133 Identities=20% Similarity=0.256 Sum_probs=92.1
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhH-----H-HHHHHHHCCcEEEEEcCCCCCCCCchhh
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS-----K-SLAFLSSVGYSLLIVNYRGSLGFGEEAL 640 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~-----~-~~~~la~~Gy~V~~~d~rGs~G~G~~~~ 640 (789)
..+..||. +-.+.-.|.. .+++|+|++.||--.+. ..|- . ..=.|+.+||.|..-|.|| ..|++.-.
T Consensus 52 ~V~T~DgY-iL~lhRIp~~---~~~rp~Vll~HGLl~sS--~~Wv~n~p~~sLaf~LadaGYDVWLgN~RG-n~ySr~h~ 124 (403)
T KOG2624|consen 52 EVTTEDGY-ILTLHRIPRG---KKKRPVVLLQHGLLASS--SSWVLNGPEQSLAFLLADAGYDVWLGNNRG-NTYSRKHK 124 (403)
T ss_pred EEEccCCe-EEEEeeecCC---CCCCCcEEEeecccccc--ccceecCccccHHHHHHHcCCceeeecCcC-cccchhhc
Confidence 34455776 3333444652 28899999999954432 2221 1 2236889999999999999 55655432
Q ss_pred ccCCC--------CCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCC---ceeEEEEeCCccch
Q 003886 641 QSLPG--------KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCNL 708 (789)
Q Consensus 641 ~~~~~--------~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~---~~~a~v~~~pv~~~ 708 (789)
...+. .|.+....|+-+.|+|+++. ...+++..+|||.|+.....++...|+ +++.+++.+|+.-+
T Consensus 125 ~l~~~~~~~FW~FS~~Em~~yDLPA~IdyIL~~--T~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~~~~aLAP~~~~ 201 (403)
T KOG2624|consen 125 KLSPSSDKEFWDFSWHEMGTYDLPAMIDYILEK--TGQEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFIALAPAAFP 201 (403)
T ss_pred ccCCcCCcceeecchhhhhhcCHHHHHHHHHHh--ccccceEEEEEEccchhheehhcccchhhhhhheeeeecchhhh
Confidence 22211 12233357899999999986 357899999999999999988887765 78899999997743
No 173
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=98.79 E-value=2.3e-07 Score=90.10 Aligned_cols=174 Identities=11% Similarity=0.134 Sum_probs=115.5
Q ss_pred CCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 003886 105 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 184 (789)
Q Consensus 105 spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i 184 (789)
|+||.+. ++ ....+.+.++++.+. ...++|..+. ..+...++|||.++|...+.+. .+.+
T Consensus 72 s~dg~~a-lS--------~swD~~lrlWDl~~g-~~t~~f~GH~-----~dVlsva~s~dn~qivSGSrDk-----Tikl 131 (315)
T KOG0279|consen 72 SSDGNFA-LS--------ASWDGTLRLWDLATG-ESTRRFVGHT-----KDVLSVAFSTDNRQIVSGSRDK-----TIKL 131 (315)
T ss_pred ccCCceE-Ee--------ccccceEEEEEecCC-cEEEEEEecC-----CceEEEEecCCCceeecCCCcc-----eeee
Confidence 5788644 33 234567888887443 3445665554 5689999999999998766554 5677
Q ss_pred ecCCceeEEEecCCCccccccCCCcccceeecCCC--CEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCC
Q 003886 185 WSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDE--TLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEED 262 (789)
Q Consensus 185 ~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg--~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 262 (789)
|+.-...+.+-......+ |...+.|||.. -.|+-.+.++..+ .|+...-+.......+..+.....++||
T Consensus 132 wnt~g~ck~t~~~~~~~~------WVscvrfsP~~~~p~Ivs~s~DktvK--vWnl~~~~l~~~~~gh~~~v~t~~vSpD 203 (315)
T KOG0279|consen 132 WNTLGVCKYTIHEDSHRE------WVSCVRFSPNESNPIIVSASWDKTVK--VWNLRNCQLRTTFIGHSGYVNTVTVSPD 203 (315)
T ss_pred eeecccEEEEEecCCCcC------cEEEEEEcCCCCCcEEEEccCCceEE--EEccCCcchhhccccccccEEEEEECCC
Confidence 743222333322222133 44999999984 5555555666543 5665444444555667777777889999
Q ss_pred cccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCC
Q 003886 263 WGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 308 (789)
Q Consensus 263 ~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~ 308 (789)
+.-...+.+...+++||+..++--.- ......+.+.+|+|.--+
T Consensus 204 GslcasGgkdg~~~LwdL~~~k~lys--l~a~~~v~sl~fspnryw 247 (315)
T KOG0279|consen 204 GSLCASGGKDGEAMLWDLNEGKNLYS--LEAFDIVNSLCFSPNRYW 247 (315)
T ss_pred CCEEecCCCCceEEEEEccCCceeEe--ccCCCeEeeEEecCCcee
Confidence 87777888899999999998875333 345557789999997554
No 174
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.79 E-value=1.4e-07 Score=96.05 Aligned_cols=281 Identities=12% Similarity=0.019 Sum_probs=153.9
Q ss_pred EEEecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCC
Q 003886 99 WTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENES 178 (789)
Q Consensus 99 ~~~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~ 178 (789)
+.|-..|++|+++|-.... ....+|.+..+..-.-...+.... ..+....||||.++|+-....+
T Consensus 227 VWfl~FS~nGkyLAsaSkD-------~Taiiw~v~~d~~~kl~~tlvgh~-----~~V~yi~wSPDdryLlaCg~~e--- 291 (519)
T KOG0293|consen 227 VWFLQFSHNGKYLASASKD-------STAIIWIVVYDVHFKLKKTLVGHS-----QPVSYIMWSPDDRYLLACGFDE--- 291 (519)
T ss_pred EEEEEEcCCCeeEeeccCC-------ceEEEEEEecCcceeeeeeeeccc-----CceEEEEECCCCCeEEecCchH---
Confidence 3455679999999865322 344667665322200011222222 3588899999999998775544
Q ss_pred CeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCC-CC
Q 003886 179 PIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSW-KG 255 (789)
Q Consensus 179 ~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 255 (789)
...+| ..|+.+.... .+....+ .+..|-|||.+++..+.+..-- .|. ..+.....|.+...- ..
T Consensus 292 --~~~lwDv~tgd~~~~y~--~~~~~S~------~sc~W~pDg~~~V~Gs~dr~i~--~wd-lDgn~~~~W~gvr~~~v~ 358 (519)
T KOG0293|consen 292 --VLSLWDVDTGDLRHLYP--SGLGFSV------SSCAWCPDGFRFVTGSPDRTII--MWD-LDGNILGNWEGVRDPKVH 358 (519)
T ss_pred --heeeccCCcchhhhhcc--cCcCCCc------ceeEEccCCceeEecCCCCcEE--Eec-CCcchhhcccccccceeE
Confidence 35566 3454443332 2211122 6889999999988766554211 122 122222222222110 01
Q ss_pred cceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCc
Q 003886 256 QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 335 (789)
Q Consensus 256 ~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~ 335 (789)
+.....|+...+.-..+..|.+++.++..-+.+ +..+..+.++..|-||+. +.+.- .+.
T Consensus 359 dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~l--ise~~~its~~iS~d~k~-----~LvnL--------------~~q 417 (519)
T KOG0293|consen 359 DLAITYDGKYVLLVTVDKKIRLYNREARVDRGL--ISEEQPITSFSISKDGKL-----ALVNL--------------QDQ 417 (519)
T ss_pred EEEEcCCCcEEEEEecccceeeechhhhhhhcc--ccccCceeEEEEcCCCcE-----EEEEc--------------ccC
Confidence 222344543444444567778888777655545 455667889999999995 43331 123
Q ss_pred ceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCC--ccCcceec-CCCCEEEEEecCCCCCCCCccccceeEEeecC
Q 003886 336 ALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS--SAFFPRFS-PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 412 (789)
Q Consensus 336 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~--~~~~p~~S-pDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~ 412 (789)
.|..+|+. +...+++-.++.- .+-.-.|- -|.+.++..|. ..++|+|+..
T Consensus 418 ei~LWDl~----------------e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSE-----------D~kvyIWhr~ 470 (519)
T KOG0293|consen 418 EIHLWDLE----------------ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSE-----------DSKVYIWHRI 470 (519)
T ss_pred eeEEeecc----------------hhhHHHHhhcccccceEEEeccCCCCcceEEecCC-----------CceEEEEEcc
Confidence 67788872 2222222222211 11111221 12233333332 2479999988
Q ss_pred CCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEE
Q 003886 413 TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 474 (789)
Q Consensus 413 ~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~d 474 (789)
++.......+... .+.-++|.|...+++.++.++|+.+||...
T Consensus 471 sgkll~~LsGHs~-------------------~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 471 SGKLLAVLSGHSK-------------------TVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred CCceeEeecCCcc-------------------eeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 8776544333322 233567999888998998899999999654
No 175
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=98.78 E-value=4.2e-08 Score=92.99 Aligned_cols=161 Identities=20% Similarity=0.303 Sum_probs=107.9
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCC-C---CCCCCc-hhhccCCCCCCcc
Q 003886 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYR-G---SLGFGE-EALQSLPGKVGSQ 650 (789)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~r-G---s~G~G~-~~~~~~~~~~~~~ 650 (789)
+.+++.-.. ..+ -+||.+.--.+- ..+.-+..+..++..||.|++||+- | +++.-. ....-+.+.-...
T Consensus 28 ldaYv~gs~----~~~-~~li~i~DvfG~-~~~n~r~~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~ 101 (242)
T KOG3043|consen 28 LDAYVVGST----SSK-KVLIVIQDVFGF-QFPNTREGADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPK 101 (242)
T ss_pred eeEEEecCC----CCC-eEEEEEEeeecc-ccHHHHHHHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCccc
Confidence 667676543 122 455555432111 1222334566788899999999985 4 222111 1101111222233
Q ss_pred cHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCcc
Q 003886 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKG 730 (789)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (789)
...|+.+.++|+..++ +..+||++|+++||-++..+....| .|.++++..|..-
T Consensus 102 ~~~~i~~v~k~lk~~g--~~kkIGv~GfCwGak~vv~~~~~~~-~f~a~v~~hps~~----------------------- 155 (242)
T KOG3043|consen 102 IWKDITAVVKWLKNHG--DSKKIGVVGFCWGAKVVVTLSAKDP-EFDAGVSFHPSFV----------------------- 155 (242)
T ss_pred chhHHHHHHHHHHHcC--CcceeeEEEEeecceEEEEeeccch-hheeeeEecCCcC-----------------------
Confidence 4789999999999774 6789999999999999998888766 7899888776421
Q ss_pred ccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCCC
Q 003886 731 KDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPFS 788 (789)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~~ 788 (789)
. ...+.++++|+|++.|+.|..+|+....++-+.|+++
T Consensus 156 --------d------------~~D~~~vk~Pilfl~ae~D~~~p~~~v~~~ee~lk~~ 193 (242)
T KOG3043|consen 156 --------D------------SADIANVKAPILFLFAELDEDVPPKDVKAWEEKLKEN 193 (242)
T ss_pred --------C------------hhHHhcCCCCEEEEeecccccCCHHHHHHHHHHHhcC
Confidence 0 1235678899999999999999999999888888653
No 176
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=98.77 E-value=5.4e-08 Score=94.29 Aligned_cols=118 Identities=25% Similarity=0.318 Sum_probs=91.6
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHH
Q 003886 575 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND 654 (789)
Q Consensus 575 ~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D 654 (789)
+....++.|. ..+.||+|+|+||.. .....|....+.+++.||+|++++.-...+ --+..++++
T Consensus 32 PkpLlI~tP~---~~G~yPVilF~HG~~--l~ns~Ys~lL~HIASHGfIVVAPQl~~~~~-----------p~~~~Ei~~ 95 (307)
T PF07224_consen 32 PKPLLIVTPS---EAGTYPVILFLHGFN--LYNSFYSQLLAHIASHGFIVVAPQLYTLFP-----------PDGQDEIKS 95 (307)
T ss_pred CCCeEEecCC---cCCCccEEEEeechh--hhhHHHHHHHHHHhhcCeEEEechhhcccC-----------CCchHHHHH
Confidence 4566788887 788999999999943 345567778889999999999999853211 123456888
Q ss_pred HHHHHHHHHHc--C------CCCCccEEEEEcCccHHHHHHHHHhCC--CceeEEEEeCCccch
Q 003886 655 VLTAIDHVIDM--G------LANPSKVTVVGGSHGGFLTTHLIGQAP--DKFVAAAARNPLCNL 708 (789)
Q Consensus 655 ~~~~i~~l~~~--~------~~d~~rv~l~G~S~GG~~a~~~~~~~p--~~~~a~v~~~pv~~~ 708 (789)
..++++|+.+. . ..+.++++++|||.||-.|..+|..+. -.|.++|...||...
T Consensus 96 aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~G~ 159 (307)
T PF07224_consen 96 AASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVAGT 159 (307)
T ss_pred HHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhheecccccCCC
Confidence 99999998763 1 257799999999999999999988763 258899998888654
No 177
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=98.76 E-value=6.3e-08 Score=98.21 Aligned_cols=113 Identities=19% Similarity=0.310 Sum_probs=71.8
Q ss_pred CCcEEEEEcCCCCCCCchhh-HHHHHHHHHCCcEEEEEcCCCC-CCCCchhhccCCCCCCcccHHHHHHHHHHHHHc--C
Q 003886 591 CDPLIVVLHGGPHSVSLSSY-SKSLAFLSSVGYSLLIVNYRGS-LGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM--G 666 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~-~~~~~~la~~Gy~V~~~d~rGs-~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~--~ 666 (789)
+..+||||-|-..+.....| ....+.|...||.|+.+.++.| .|+|-... ..|++|+.++|+||+.. +
T Consensus 32 ~~~~llfIGGLtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~~SL--------~~D~~eI~~~v~ylr~~~~g 103 (303)
T PF08538_consen 32 APNALLFIGGLTDGLLTVPYLPDLAEALEETGWSLFQVQLSSSYSGWGTSSL--------DRDVEEIAQLVEYLRSEKGG 103 (303)
T ss_dssp SSSEEEEE--TT--TT-STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S--H--------HHHHHHHHHHHHHHHHHS--
T ss_pred CCcEEEEECCCCCCCCCCchHHHHHHHhccCCeEEEEEEecCccCCcCcchh--------hhHHHHHHHHHHHHHHhhcc
Confidence 56689999774443333333 4456677778999999999853 56765443 45799999999999987 2
Q ss_pred CCCCccEEEEEcCccHHHHHHHHHhCC-----CceeEEEEeCCccchhhh
Q 003886 667 LANPSKVTVVGGSHGGFLTTHLIGQAP-----DKFVAAAARNPLCNLALM 711 (789)
Q Consensus 667 ~~d~~rv~l~G~S~GG~~a~~~~~~~p-----~~~~a~v~~~pv~~~~~~ 711 (789)
....++|+|||||-|..-+++++.+.. ..+.++|+.+||.|-..+
T Consensus 104 ~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDREa~ 153 (303)
T PF08538_consen 104 HFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDREAI 153 (303)
T ss_dssp ----S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TTST
T ss_pred ccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChhHh
Confidence 246789999999999999999988642 579999999999986544
No 178
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.75 E-value=2.2e-07 Score=95.94 Aligned_cols=236 Identities=13% Similarity=0.071 Sum_probs=147.4
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
+++..+.|.|.-..|+...- + +.-++|.++ ......+-+++..-. +....|+|+|+..+|++.
T Consensus 214 ~~I~sv~FHp~~plllvaG~-d-~~lrifqvDGk~N~~lqS~~l~~fP---------i~~a~f~p~G~~~i~~s~----- 277 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGL-D-GTLRIFQVDGKVNPKLQSIHLEKFP---------IQKAEFAPNGHSVIFTSG----- 277 (514)
T ss_pred CCceEEEecCCCceEEEecC-C-CcEEEEEecCccChhheeeeeccCc---------cceeeecCCCceEEEecc-----
Confidence 56889999997665554432 2 455667666 334444444442211 267889999996666543
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCC--CCccceEEEeeCCCCCc
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK--SLSVGQVVWAPLNEGLH 310 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~--~~~~~~~~wSPDg~~~~ 310 (789)
++.-+|.||+.+.++..+....+ .-....+..|||++.
T Consensus 278 --------------------------------------rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~f-- 317 (514)
T KOG2055|consen 278 --------------------------------------RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNF-- 317 (514)
T ss_pred --------------------------------------cceEEEEeeccccccccccCCCCcccchhheeEecCCCCe--
Confidence 23679999999999988842111 225678899999998
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEe
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 390 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s 390 (789)
|++.+ +..+|+++.. .+++...--.-.+.+....||.||+.|+.+.
T Consensus 318 --ia~~G---------------~~G~I~lLha-----------------kT~eli~s~KieG~v~~~~fsSdsk~l~~~~ 363 (514)
T KOG2055|consen 318 --IAIAG---------------NNGHIHLLHA-----------------KTKELITSFKIEGVVSDFTFSSDSKELLASG 363 (514)
T ss_pred --EEEcc---------------cCceEEeehh-----------------hhhhhhheeeeccEEeeEEEecCCcEEEEEc
Confidence 99988 3447888876 4444322223356788899999998876555
Q ss_pred cCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEE
Q 003886 391 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 470 (789)
Q Consensus 391 ~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l 470 (789)
. ..++|+||+..... ...+.. +++.. -..++.|.+|+ ++.+++..|-.+|
T Consensus 364 ~-----------~GeV~v~nl~~~~~----------~~rf~D--~G~v~------gts~~~S~ng~-ylA~GS~~GiVNI 413 (514)
T KOG2055|consen 364 G-----------TGEVYVWNLRQNSC----------LHRFVD--DGSVH------GTSLCISLNGS-YLATGSDSGIVNI 413 (514)
T ss_pred C-----------CceEEEEecCCcce----------EEEEee--cCccc------eeeeeecCCCc-eEEeccCcceEEE
Confidence 2 23799999976421 111110 11111 13567788998 4466677788888
Q ss_pred EEEEC--CCCcEEEecCCCC---CceeEEeeecCCEEEEEEeCC
Q 003886 471 ISVNV--SSGELLRITPAES---NFSWSLLTLDGDNIIAVSSSP 509 (789)
Q Consensus 471 ~~~dl--~tg~~~~lt~~~~---~~~~~~~s~dg~~l~~~~ss~ 509 (789)
|..+- .++..+++..-.. .++...|++|+..|+..+...
T Consensus 414 Yd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~ 457 (514)
T KOG2055|consen 414 YDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVK 457 (514)
T ss_pred eccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhcc
Confidence 87542 3455555543322 345567888877555444333
No 179
>PRK07868 acyl-CoA synthetase; Validated
Probab=98.75 E-value=1.3e-07 Score=116.14 Aligned_cols=118 Identities=16% Similarity=0.260 Sum_probs=72.9
Q ss_pred EEEEEEecCCCCC--CCCCcEEEEEcCCCCCCCchhhHH-----HHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCC
Q 003886 576 FEAIFVSSSHKKD--CSCDPLIVVLHGGPHSVSLSSYSK-----SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (789)
Q Consensus 576 l~~~~~~P~~~~~--~~~~P~vv~~HGg~~~~~~~~~~~-----~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~ 648 (789)
+.-+.|.|...+. ....|.||++||.+... ..|.. ...+|+++||.|+++|+ |.++. . . ...
T Consensus 49 ~~l~~y~~~~~~~~~~~~~~plllvhg~~~~~--~~~d~~~~~s~v~~L~~~g~~v~~~d~-G~~~~--~---~--~~~- 117 (994)
T PRK07868 49 YRLRRYFPPDNRPGQPPVGPPVLMVHPMMMSA--DMWDVTRDDGAVGILHRAGLDPWVIDF-GSPDK--V---E--GGM- 117 (994)
T ss_pred EEEEEeCCCCccccccCCCCcEEEECCCCCCc--cceecCCcccHHHHHHHCCCEEEEEcC-CCCCh--h---H--cCc-
Confidence 4445566653211 23457899999976643 34433 26789999999999996 32221 1 0 001
Q ss_pred cccH----HHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHh-CCCceeEEEEeCCccc
Q 003886 649 SQDV----NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ-APDKFVAAAARNPLCN 707 (789)
Q Consensus 649 ~~~~----~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~-~p~~~~a~v~~~pv~~ 707 (789)
...+ ..+.++++.+.+.. .+++.++|||+||.+++.+++. .+++++.+|+.+...|
T Consensus 118 ~~~l~~~i~~l~~~l~~v~~~~---~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d 178 (994)
T PRK07868 118 ERNLADHVVALSEAIDTVKDVT---GRDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVD 178 (994)
T ss_pred cCCHHHHHHHHHHHHHHHHHhh---CCceEEEEEChhHHHHHHHHHhcCCCccceEEEEecccc
Confidence 1222 23344444444332 3579999999999999888764 4568999988666544
No 180
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=98.75 E-value=9.6e-08 Score=97.11 Aligned_cols=239 Identities=14% Similarity=0.172 Sum_probs=145.4
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~ 234 (789)
.+..+.|.|+|++|+..+..+ -|.+|.+... .++.-...|+ ..+..+.||++|.+++....+.- ..
T Consensus 98 ~V~~v~WtPeGRRLltgs~SG-----EFtLWNg~~f--nFEtilQaHD-----s~Vr~m~ws~~g~wmiSgD~gG~--iK 163 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQSG-----EFTLWNGTSF--NFETILQAHD-----SPVRTMKWSHNGTWMISGDKGGM--IK 163 (464)
T ss_pred ceeeEEEcCCCceeEeecccc-----cEEEecCcee--eHHHHhhhhc-----ccceeEEEccCCCEEEEcCCCce--EE
Confidence 377889999999999877654 5888965211 1111112222 22389999999999876544332 23
Q ss_pred CccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCce-EeccCCCCCCccceEEEeeCCCCCccEE
Q 003886 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-QAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (789)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~-~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (789)
+|.............+..-+....|++.-..-.+-..++.|.+||..-.+. +.| ......+..+.|.|.- . +
T Consensus 164 yWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL--~GHgwdVksvdWHP~k-g----L 236 (464)
T KOG0284|consen 164 YWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL--RGHGWDVKSVDWHPTK-G----L 236 (464)
T ss_pred ecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee--ccCCCCcceeccCCcc-c----e
Confidence 454322221111111222333445555433333444568899999766554 444 3445578899999964 4 6
Q ss_pred EEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeecCCCCCccCcceecCCCCEEEEEecC
Q 003886 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (789)
Q Consensus 314 ~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~la~~s~~ 392 (789)
++++. ++.-+-.+|. .++. +..|..+...+....|+|+|.+|+..+.+
T Consensus 237 iasgs--------------kDnlVKlWDp-----------------rSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD 285 (464)
T KOG0284|consen 237 IASGS--------------KDNLVKLWDP-----------------RSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKD 285 (464)
T ss_pred eEEcc--------------CCceeEeecC-----------------CCcchhhhhhhccceEEEEEEcCCCCeeEEccCC
Confidence 66652 2225667786 4443 45666777789999999999999888755
Q ss_pred CCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003886 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (789)
Q Consensus 393 ~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (789)
. .+.++|+.+-+......+..+ .+....|+|=...|+.++..++....|.
T Consensus 286 ~-----------~~kv~DiR~mkEl~~~r~Hkk-------------------dv~~~~WhP~~~~lftsgg~Dgsvvh~~ 335 (464)
T KOG0284|consen 286 Q-----------SCKVFDIRTMKELFTYRGHKK-------------------DVTSLTWHPLNESLFTSGGSDGSVVHWV 335 (464)
T ss_pred c-----------eEEEEehhHhHHHHHhhcchh-------------------hheeeccccccccceeeccCCCceEEEe
Confidence 3 478888764222221111111 1345679987777888777777777777
Q ss_pred EEC
Q 003886 473 VNV 475 (789)
Q Consensus 473 ~dl 475 (789)
+++
T Consensus 336 v~~ 338 (464)
T KOG0284|consen 336 VGL 338 (464)
T ss_pred ccc
Confidence 763
No 181
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=98.75 E-value=1.7e-08 Score=108.72 Aligned_cols=113 Identities=26% Similarity=0.344 Sum_probs=66.7
Q ss_pred CCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCC-CCCC---C--Cch--hhc-----c-------CCCCCCc
Q 003886 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYR-GSLG---F--GEE--ALQ-----S-------LPGKVGS 649 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~r-Gs~G---~--G~~--~~~-----~-------~~~~~~~ 649 (789)
.++|+|||-||-+++ ...|...+..||++||+|+++|+| ||.. + ... ... . .......
T Consensus 98 ~~~PvvIFSHGlgg~--R~~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (379)
T PF03403_consen 98 GKFPVVIFSHGLGGS--RTSYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYLEEEWIPLRDFDPE 175 (379)
T ss_dssp S-EEEEEEE--TT----TTTTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT---------EEEE-----GG
T ss_pred CCCCEEEEeCCCCcc--hhhHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCccccccccccccccceeccccccch
Confidence 789999999996664 556788899999999999999999 5422 0 111 000 0 0000000
Q ss_pred -----------ccHHHHHHHHHHHHH--c------------------CCCCCccEEEEEcCccHHHHHHHHHhCCCceeE
Q 003886 650 -----------QDVNDVLTAIDHVID--M------------------GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVA 698 (789)
Q Consensus 650 -----------~~~~D~~~~i~~l~~--~------------------~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a 698 (789)
.-..|+..+++.+.+ . +.+|.++|+++|||+||..++.++.+. .+|++
T Consensus 176 ~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa~~~l~~d-~r~~~ 254 (379)
T PF03403_consen 176 EEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATALQALRQD-TRFKA 254 (379)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHHHH--TT--E
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHHHHHHhhc-cCcce
Confidence 114567777777653 1 336789999999999999999988875 68999
Q ss_pred EEEeCCc
Q 003886 699 AAARNPL 705 (789)
Q Consensus 699 ~v~~~pv 705 (789)
+|+..|.
T Consensus 255 ~I~LD~W 261 (379)
T PF03403_consen 255 GILLDPW 261 (379)
T ss_dssp EEEES--
T ss_pred EEEeCCc
Confidence 9988774
No 182
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=98.74 E-value=8.3e-08 Score=98.98 Aligned_cols=119 Identities=21% Similarity=0.280 Sum_probs=84.5
Q ss_pred CeeEEEEEEecCCCCC---CCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCC---
Q 003886 573 QKPFEAIFVSSSHKKD---CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK--- 646 (789)
Q Consensus 573 g~~l~~~~~~P~~~~~---~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~--- 646 (789)
+.++.-.++.|..... ..+.|+|++-||.+.. ...|.+..+.|++.||+|..+++.|+.--+..........
T Consensus 49 ~~~~~v~~~~p~~~~~~~~~~~~PlvvlshG~Gs~--~~~f~~~A~~lAs~Gf~Va~~~hpgs~~~~~~~~~~~~~~~~p 126 (365)
T COG4188 49 DRERPVDLRLPQGGTGTVALYLLPLVVLSHGSGSY--VTGFAWLAEHLASYGFVVAAPDHPGSNAGGAPAAYAGPGSYAP 126 (365)
T ss_pred CCccccceeccCCCccccccCcCCeEEecCCCCCC--ccchhhhHHHHhhCceEEEeccCCCcccccCChhhcCCcccch
Confidence 4456667777764321 2489999999995543 6677788899999999999999998532221111111111
Q ss_pred -CCcccHHHHHHHHHHHHHc---C----CCCCccEEEEEcCccHHHHHHHHHhCC
Q 003886 647 -VGSQDVNDVLTAIDHVIDM---G----LANPSKVTVVGGSHGGFLTTHLIGQAP 693 (789)
Q Consensus 647 -~~~~~~~D~~~~i~~l~~~---~----~~d~~rv~l~G~S~GG~~a~~~~~~~p 693 (789)
.......|+...+++|.+. + .+|..+|+++|||+||+.++.+++-+.
T Consensus 127 ~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~ 181 (365)
T COG4188 127 AEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAEL 181 (365)
T ss_pred hhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhccccc
Confidence 1112357888888888877 4 489999999999999999999887544
No 183
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=98.74 E-value=4.9e-09 Score=96.77 Aligned_cols=183 Identities=17% Similarity=0.222 Sum_probs=105.4
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHH-HHHCCcEEEEEcCCCCCCCCchhhccCCCCCCc-ccHHHHHHHHHHHHHcCCCC
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAF-LSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS-QDVNDVLTAIDHVIDMGLAN 669 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~-la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~-~~~~D~~~~i~~l~~~~~~d 669 (789)
.-.|+++.|.-++ ....|.+.... +...-+.|++.|.+| ||.+-... .+.+. .-.+|...+++-+.. ++
T Consensus 42 ~~~iLlipGalGs-~~tDf~pql~~l~k~l~~TivawDPpG---YG~SrPP~--Rkf~~~ff~~Da~~avdLM~a---Lk 112 (277)
T KOG2984|consen 42 PNYILLIPGALGS-YKTDFPPQLLSLFKPLQVTIVAWDPPG---YGTSRPPE--RKFEVQFFMKDAEYAVDLMEA---LK 112 (277)
T ss_pred CceeEeccccccc-ccccCCHHHHhcCCCCceEEEEECCCC---CCCCCCCc--ccchHHHHHHhHHHHHHHHHH---hC
Confidence 3457777886655 34455554433 333449999999987 77654321 12221 114566666665544 36
Q ss_pred CccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc---chhhh--hcCCCCCcchh------hhhccCccccccCCCC
Q 003886 670 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC---NLALM--VGTTDIPDWCY------VESYGSKGKDSFTESP 738 (789)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~---~~~~~--~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 738 (789)
.+++.|+|||-||..|+.+|+++++.+..+|.+++.. +...| -+..+...|.- ...|+.........
T Consensus 113 ~~~fsvlGWSdGgiTalivAak~~e~v~rmiiwga~ayvn~~~~ma~kgiRdv~kWs~r~R~P~e~~Yg~e~f~~~wa-- 190 (277)
T KOG2984|consen 113 LEPFSVLGWSDGGITALIVAAKGKEKVNRMIIWGAAAYVNHLGAMAFKGIRDVNKWSARGRQPYEDHYGPETFRTQWA-- 190 (277)
T ss_pred CCCeeEeeecCCCeEEEEeeccChhhhhhheeecccceecchhHHHHhchHHHhhhhhhhcchHHHhcCHHHHHHHHH--
Confidence 7899999999999999999999999888887776532 22222 12233333331 11111100000000
Q ss_pred Ch-hhHHHHHhcC----ccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHC
Q 003886 739 SV-EDLTRFHSKS----PISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHI 785 (789)
Q Consensus 739 ~~-~~~~~~~~~s----p~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l 785 (789)
.| +....+...- -...+.+++||+||+||++|+.|+-.++--+...+
T Consensus 191 ~wvD~v~qf~~~~dG~fCr~~lp~vkcPtli~hG~kDp~~~~~hv~fi~~~~ 242 (277)
T KOG2984|consen 191 AWVDVVDQFHSFCDGRFCRLVLPQVKCPTLIMHGGKDPFCGDPHVCFIPVLK 242 (277)
T ss_pred HHHHHHHHHhhcCCCchHhhhcccccCCeeEeeCCcCCCCCCCCccchhhhc
Confidence 00 1111111110 11347899999999999999999887776554443
No 184
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.73 E-value=1.7e-06 Score=96.20 Aligned_cols=221 Identities=14% Similarity=0.163 Sum_probs=128.8
Q ss_pred cceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccC
Q 003886 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (789)
Q Consensus 211 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (789)
..+++||||++|||...... .....|+++|+++|+...-.
T Consensus 127 ~~~~~Spdg~~la~~~s~~G---------------------------------------~e~~~l~v~Dl~tg~~l~d~- 166 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGG---------------------------------------SEWYTLRVFDLETGKFLPDG- 166 (414)
T ss_dssp EEEEETTTSSEEEEEEEETT---------------------------------------SSEEEEEEEETTTTEEEEEE-
T ss_pred eeeeECCCCCEEEEEecCCC---------------------------------------CceEEEEEEECCCCcCcCCc-
Confidence 46889999999999865431 12368999999999654320
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCe--eecC
Q 003886 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV--VNLT 368 (789)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~Lt 368 (789)
+. ......+.|++||+. ++|+......+.. ..+.+..||+..+ .+... +.+.
T Consensus 167 i~-~~~~~~~~W~~d~~~----~~y~~~~~~~~~~----~~~~~~~v~~~~~-----------------gt~~~~d~lvf 220 (414)
T PF02897_consen 167 IE-NPKFSSVSWSDDGKG----FFYTRFDEDQRTS----DSGYPRQVYRHKL-----------------GTPQSEDELVF 220 (414)
T ss_dssp EE-EEESEEEEECTTSSE----EEEEECSTTTSS-----CCGCCEEEEEEET-----------------TS-GGG-EEEE
T ss_pred cc-ccccceEEEeCCCCE----EEEEEeCcccccc----cCCCCcEEEEEEC-----------------CCChHhCeeEE
Confidence 11 122234999999999 9999866543210 1123558999998 33322 2343
Q ss_pred CCCCc---cCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccC
Q 003886 369 ESISS---AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 445 (789)
Q Consensus 369 ~~~~~---~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~ 445 (789)
..... ......|+||++|+..+.... ..+.+|++|+..+... .. ....+.. .+++
T Consensus 221 e~~~~~~~~~~~~~s~d~~~l~i~~~~~~-------~~s~v~~~d~~~~~~~--~~---~~~~l~~-----~~~~----- 278 (414)
T PF02897_consen 221 EEPDEPFWFVSVSRSKDGRYLFISSSSGT-------SESEVYLLDLDDGGSP--DA---KPKLLSP-----REDG----- 278 (414)
T ss_dssp C-TTCTTSEEEEEE-TTSSEEEEEEESSS-------SEEEEEEEECCCTTTS--S----SEEEEEE-----SSSS-----
T ss_pred eecCCCcEEEEEEecCcccEEEEEEEccc-------cCCeEEEEeccccCCC--cC---CcEEEeC-----CCCc-----
Confidence 33222 346788999999887776642 1368999998875200 00 0111111 0111
Q ss_pred CCCCccccCCCEEEEEEEeC-CeEEEEEEECCCCc---EE-EecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEee
Q 003886 446 ILSNPWLSDGCTMLLSSIWG-SSQVIISVNVSSGE---LL-RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 520 (789)
Q Consensus 446 ~~~~~ws~Dg~~l~~~~~~~-~~~~l~~~dl~tg~---~~-~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~ 520 (789)
... .....|..+|+.++.+ ....|+.+++++.. .. .+.+.........++..+++|++....... ++|.++++
T Consensus 279 ~~~-~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~-~~l~v~~~ 356 (414)
T PF02897_consen 279 VEY-YVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGS-SRLRVYDL 356 (414)
T ss_dssp -EE-EEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTE-EEEEEEET
T ss_pred eEE-EEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCc-cEEEEEEC
Confidence 000 1122366788777654 45789999998765 33 444444334555777888888877765553 46778877
Q ss_pred c
Q 003886 521 V 521 (789)
Q Consensus 521 ~ 521 (789)
.
T Consensus 357 ~ 357 (414)
T PF02897_consen 357 D 357 (414)
T ss_dssp T
T ss_pred C
Confidence 6
No 185
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=98.73 E-value=8.3e-08 Score=104.61 Aligned_cols=125 Identities=17% Similarity=0.197 Sum_probs=82.2
Q ss_pred CeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCC----cEEEEEcCCCCCCCCchhhccCCCCCC
Q 003886 573 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG----YSLLIVNYRGSLGFGEEALQSLPGKVG 648 (789)
Q Consensus 573 g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G----y~V~~~d~rGs~G~G~~~~~~~~~~~~ 648 (789)
|.....++|.|+++. .+++|+|+++||..+..... ....+..|.+.| .+|+.+|.........+. ..
T Consensus 191 g~~r~v~VY~P~~y~-~~~~PvlyllDG~~w~~~~~-~~~~ld~li~~g~i~P~ivV~id~~~~~~R~~el----~~--- 261 (411)
T PRK10439 191 GNSRRVWIYTTGDAA-PEERPLAILLDGQFWAESMP-VWPALDSLTHRGQLPPAVYLLIDAIDTTHRSQEL----PC--- 261 (411)
T ss_pred CCceEEEEEECCCCC-CCCCCEEEEEECHHhhhcCC-HHHHHHHHHHcCCCCceEEEEECCCCcccccccC----Cc---
Confidence 556778899998875 57899999999966532222 223445666777 457888863211111111 11
Q ss_pred cccH-HHHH-HHHHHHHHcC--CCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 649 SQDV-NDVL-TAIDHVIDMG--LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 649 ~~~~-~D~~-~~i~~l~~~~--~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
...+ ..+. +.+-++.++. ..|+++.+|+|+||||+.|+.++.++|++|.++++.+|.+
T Consensus 262 ~~~f~~~l~~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs~ 323 (411)
T PRK10439 262 NADFWLAVQQELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGSF 323 (411)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEEeccce
Confidence 1111 1221 2334444431 2578899999999999999999999999999999999864
No 186
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=98.73 E-value=1.4e-08 Score=100.83 Aligned_cols=132 Identities=19% Similarity=0.205 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhh---cCC--CCCcchhhh-h
Q 003886 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV---GTT--DIPDWCYVE-S 725 (789)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~---~~~--~~~~~~~~~-~ 725 (789)
++-+..+++||.+++.++.++|+|+|.|.||.+|+.+++.+| .++++|+.+|..-..... ... .++...+.. .
T Consensus 3 LEyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~~~~~~~~~~~~~~lp~~~~~~~~ 81 (213)
T PF08840_consen 3 LEYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVVFQGIGFYRDSSKPLPYLPFDISK 81 (213)
T ss_dssp CHHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB--SSEEEETTE--EE----B-GGG
T ss_pred hHHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeEecchhcccCCCccCCcCCcChhh
Confidence 456789999999999999999999999999999999999998 799999999854321110 000 111111000 0
Q ss_pred c--cCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHH-HHHHHCC
Q 003886 726 Y--GSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGL-QVIYHIP 786 (789)
Q Consensus 726 ~--~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~-~l~~~l~ 786 (789)
. ........ .........-......--+.++++|+|+++|++|.+.|-.... .+.+.|+
T Consensus 82 ~~~~~~~~~~~--~~~~~~~~~~~~~~a~IpvE~i~~piLli~g~dD~~WpS~~~a~~i~~rL~ 143 (213)
T PF08840_consen 82 FSWNEPGLLRS--RYAFELADDKAVEEARIPVEKIKGPILLISGEDDQIWPSSEMAEQIEERLK 143 (213)
T ss_dssp -EE-TTS-EE---TT-B--TTTGGGCCCB--GGG--SEEEEEEETT-SSS-HHHHHHHHHHHHH
T ss_pred ceecCCcceeh--hhhhhcccccccccccccHHHcCCCEEEEEeCCCCccchHHHHHHHHHHHH
Confidence 0 00000000 0000000000001112236789999999999999999886555 4444454
No 187
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.73 E-value=3.6e-07 Score=103.99 Aligned_cols=215 Identities=14% Similarity=0.102 Sum_probs=113.8
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEec---CCceeEE-----EecCCCccccccCCCcccceeecCCCCEEEEEee
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWS---QSQLEKE-----FHVPQTVHGSVYADGWFEGISWNSDETLIAYVAE 227 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~---~~~~~~~-----~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~ 227 (789)
+.....+|||.++|......+++..+|.... ..+...+ ...-....|.| .++.|||||++||+.++
T Consensus 16 IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv------~CVR~S~dG~~lAsGSD 89 (942)
T KOG0973|consen 16 IFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSV------NCVRFSPDGSYLASGSD 89 (942)
T ss_pred EEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCce------eEEEECCCCCeEeeccC
Confidence 6688899999998875533333333333331 1111111 00011222333 79999999999999888
Q ss_pred cCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCC
Q 003886 228 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 307 (789)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~ 307 (789)
+..... |..... +. ...|...+ +...+--|. .+..+ ...+..+.++.||||+.
T Consensus 90 D~~v~i--W~~~~~--~~----------~~~fgs~g-------~~~~vE~wk----~~~~l--~~H~~DV~Dv~Wsp~~~ 142 (942)
T KOG0973|consen 90 DRLVMI--WERAEI--GS----------GTVFGSTG-------GAKNVESWK----VVSIL--RGHDSDVLDVNWSPDDS 142 (942)
T ss_pred cceEEE--eeeccc--CC----------cccccccc-------cccccceee----EEEEE--ecCCCccceeccCCCcc
Confidence 753211 110000 00 00000000 001111111 11222 12344567899999999
Q ss_pred CCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEE
Q 003886 308 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 387 (789)
Q Consensus 308 ~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la 387 (789)
. ++-++. +..|.+++.. .-...+.|..+.+.+-...|-|-||+||
T Consensus 143 ~----lvS~s~---------------DnsViiwn~~----------------tF~~~~vl~~H~s~VKGvs~DP~Gky~A 187 (942)
T KOG0973|consen 143 L----LVSVSL---------------DNSVIIWNAK----------------TFELLKVLRGHQSLVKGVSWDPIGKYFA 187 (942)
T ss_pred E----EEEecc---------------cceEEEEccc----------------cceeeeeeecccccccceEECCccCeee
Confidence 8 887773 2256677751 2244566777778889999999999998
Q ss_pred EEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEE
Q 003886 388 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 462 (789)
Q Consensus 388 ~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~ 462 (789)
..+.+. .|.+|+... +.+...+..+.+++-. .....++.|||||++|....
T Consensus 188 SqsdDr-----------tikvwrt~d----------w~i~k~It~pf~~~~~---~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 188 SQSDDR-----------TLKVWRTSD----------WGIEKSITKPFEESPL---TTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred eecCCc-----------eEEEEEccc----------ceeeEeeccchhhCCC---cceeeecccCCCcCeecchh
Confidence 877654 466666322 1122222222221111 01245889999999876544
No 188
>PTZ00420 coronin; Provisional
Probab=98.73 E-value=5e-06 Score=93.55 Aligned_cols=212 Identities=8% Similarity=0.071 Sum_probs=118.6
Q ss_pred cccEEEEeCCC-CCeEEEEecCCCCCCeEEEEec---CCceeE-----EEecCCCccccccCCCcccceeecCCCCEEEE
Q 003886 154 TGASAVVPSPS-GSKLLVVRNPENESPIQFELWS---QSQLEK-----EFHVPQTVHGSVYADGWFEGISWNSDETLIAY 224 (789)
Q Consensus 154 ~~~~~~~~SPd-G~~la~~~~~~~~~~~~~~i~~---~~~~~~-----~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~ 224 (789)
+.+...+|+|+ +..||..+... .+.+|+ .+.... +..+ .+..+.| ..+.|+|++..++.
T Consensus 75 ~~V~~lafsP~~~~lLASgS~Dg-----tIrIWDi~t~~~~~~~i~~p~~~L-~gH~~~V------~sVaf~P~g~~iLa 142 (568)
T PTZ00420 75 SSILDLQFNPCFSEILASGSEDL-----TIRVWEIPHNDESVKEIKDPQCIL-KGHKKKI------SIIDWNPMNYYIMC 142 (568)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCC-----eEEEEECCCCCccccccccceEEe-ecCCCcE------EEEEECCCCCeEEE
Confidence 45889999997 67777665443 455562 222111 1111 1122223 78999999987754
Q ss_pred EeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEee
Q 003886 225 VAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP 304 (789)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSP 304 (789)
++.. +..|.+||+.+++.... ......+..+.|+|
T Consensus 143 SgS~-------------------------------------------DgtIrIWDl~tg~~~~~--i~~~~~V~Slswsp 177 (568)
T PTZ00420 143 SSGF-------------------------------------------DSFVNIWDIENEKRAFQ--INMPKKLSSLKWNI 177 (568)
T ss_pred EEeC-------------------------------------------CCeEEEEECCCCcEEEE--EecCCcEEEEEECC
Confidence 4321 25788999988865432 22334578999999
Q ss_pred CCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeecCCCCCcc-----Ccce
Q 003886 305 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSA-----FFPR 378 (789)
Q Consensus 305 Dg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~-----~~p~ 378 (789)
||+. |+..+ ....|.++|+ .++. ...+..+.+.. ..-.
T Consensus 178 dG~l----Lat~s---------------~D~~IrIwD~-----------------Rsg~~i~tl~gH~g~~~s~~v~~~~ 221 (568)
T PTZ00420 178 KGNL----LSGTC---------------VGKHMHIIDP-----------------RKQEIASSFHIHDGGKNTKNIWIDG 221 (568)
T ss_pred CCCE----EEEEe---------------cCCEEEEEEC-----------------CCCcEEEEEecccCCceeEEEEeee
Confidence 9997 66554 1236888887 3333 34454443321 1124
Q ss_pred ecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEE
Q 003886 379 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTM 458 (789)
Q Consensus 379 ~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l 458 (789)
||+|+++|+..+..+. ...+|.+||+..... .+.. ..+. ... +...+.|.++...+
T Consensus 222 fs~d~~~IlTtG~d~~-------~~R~VkLWDlr~~~~-pl~~-----~~ld------~~~-----~~L~p~~D~~tg~l 277 (568)
T PTZ00420 222 LGGDDNYILSTGFSKN-------NMREMKLWDLKNTTS-ALVT-----MSID------NAS-----APLIPHYDESTGLI 277 (568)
T ss_pred EcCCCCEEEEEEcCCC-------CccEEEEEECCCCCC-ceEE-----EEec------CCc-----cceEEeeeCCCCCE
Confidence 5799998887665431 224699999875222 1110 0000 000 11123455665557
Q ss_pred EEEEEeCCeEEEEEEECCCCcEEEec
Q 003886 459 LLSSIWGSSQVIISVNVSSGELLRIT 484 (789)
Q Consensus 459 ~~~~~~~~~~~l~~~dl~tg~~~~lt 484 (789)
|+++..++...+|-+ ..+.+..+.
T Consensus 278 ~lsGkGD~tIr~~e~--~~~~~~~l~ 301 (568)
T PTZ00420 278 YLIGKGDGNCRYYQH--SLGSIRKVN 301 (568)
T ss_pred EEEEECCCeEEEEEc--cCCcEEeec
Confidence 777666666666544 456665554
No 189
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=98.72 E-value=2e-06 Score=83.31 Aligned_cols=270 Identities=16% Similarity=0.204 Sum_probs=148.8
Q ss_pred cccEEEEeCCC-CCeEEEEecCCCCCCeEEEEecCCc---eeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecC
Q 003886 154 TGASAVVPSPS-GSKLLVVRNPENESPIQFELWSQSQ---LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 229 (789)
Q Consensus 154 ~~~~~~~~SPd-G~~la~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~ 229 (789)
+.+...+|+|- |..||..+... -.++|..+. ..-.+.+..+..-.| ..++|||.|+.||.++.+.
T Consensus 15 ~r~W~~awhp~~g~ilAscg~Dk-----~vriw~~~~~~s~~ck~vld~~hkrsV------RsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 15 DRVWSVAWHPGKGVILASCGTDK-----AVRIWSTSSGDSWTCKTVLDDGHKRSV------RSVAWSPHGRYLASASFDA 83 (312)
T ss_pred CcEEEEEeccCCceEEEeecCCc-----eEEEEecCCCCcEEEEEeccccchhee------eeeeecCCCcEEEEeeccc
Confidence 45888999998 77666554432 567774331 222222333333334 7999999999999988776
Q ss_pred CCCCCCccCC--CCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCc-eE---eccCCCCCCccceEEEe
Q 003886 230 SPSKPTFSLG--STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQ---AVKGIPKSLSVGQVVWA 303 (789)
Q Consensus 230 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~-~~---~l~~~~~~~~~~~~~wS 303 (789)
+.. .|... .-+.....+.+..-.-...|++++.-+..-.++..+|+|.++.+. .. .| .+....+-.+.|.
T Consensus 84 t~~--Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL--~~HtqDVK~V~WH 159 (312)
T KOG0645|consen 84 TVV--IWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVL--QEHTQDVKHVIWH 159 (312)
T ss_pred eEE--EeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeee--ccccccccEEEEc
Confidence 432 12211 111223333444444456788887666666788899999987553 22 23 2334467899999
Q ss_pred eCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCC-CCeeecCCCCCccCcceecCC
Q 003886 304 PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED-LPVVNLTESISSAFFPRFSPD 382 (789)
Q Consensus 304 PDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~Lt~~~~~~~~p~~SpD 382 (789)
|... |+|.+. |.....+|+-+.+ +. .-...|..+...+....|.|.
T Consensus 160 Pt~d-----lL~S~S------------YDnTIk~~~~~~d----------------ddW~c~~tl~g~~~TVW~~~F~~~ 206 (312)
T KOG0645|consen 160 PTED-----LLFSCS------------YDNTIKVYRDEDD----------------DDWECVQTLDGHENTVWSLAFDNI 206 (312)
T ss_pred CCcc-----eeEEec------------cCCeEEEEeecCC----------------CCeeEEEEecCccceEEEEEecCC
Confidence 9655 555541 2222234443321 11 124567777777889999999
Q ss_pred CCEEEEEecCCCCCC-----C-CccccceeEEeecCCCCCCCcccceeeEEeeeecc---CCCCC------ccccccCCC
Q 003886 383 GKFLVFLSAKSSVDS-----G-AHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCA---EGDCF------PGLYSSSIL 447 (789)
Q Consensus 383 G~~la~~s~~~~~~~-----g-~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~---~~~~f------~g~~~~~~~ 447 (789)
|.+|+..+++.++.- + ++.....||.+.|.+ +... +.+.++.+.+.... .+..+ .+.+...+.
T Consensus 207 G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~~-~~Ia-S~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVN 284 (312)
T KOG0645|consen 207 GSRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWDN-GVIA-SGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVN 284 (312)
T ss_pred CceEEEecCCcceEeeeeccCcchhcccceEeeeecc-cceE-eccCCCEEEEEEecCCCCCchHHHHHhhhcccccccc
Confidence 999998887654210 0 000112344344431 1111 11111222222211 11111 112334567
Q ss_pred CCccccCCCEEEEEEEeCCeEEEEEE
Q 003886 448 SNPWLSDGCTMLLSSIWGSSQVIISV 473 (789)
Q Consensus 448 ~~~ws~Dg~~l~~~~~~~~~~~l~~~ 473 (789)
.+.|.|.++.+++++.++|..++|.+
T Consensus 285 sV~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 285 SVQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred eEEEcCCCCCceeecCCCceEEEEEe
Confidence 78898876667777777787777764
No 190
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=98.72 E-value=1.8e-07 Score=97.28 Aligned_cols=240 Identities=14% Similarity=0.099 Sum_probs=142.2
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEec-CCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
.++++..|.|---+|+- +..-++.-.+|.++.++...+.+.. ...+ ..++||++|+.++.++.+
T Consensus 215 kgvsai~~fp~~~hLlL-S~gmD~~vklW~vy~~~~~lrtf~gH~k~V----------rd~~~s~~g~~fLS~sfD---- 279 (503)
T KOG0282|consen 215 KGVSAIQWFPKKGHLLL-SGGMDGLVKLWNVYDDRRCLRTFKGHRKPV----------RDASFNNCGTSFLSASFD---- 279 (503)
T ss_pred cccchhhhccceeeEEE-ecCCCceEEEEEEecCcceehhhhcchhhh----------hhhhccccCCeeeeeecc----
Confidence 56888999994444432 3332344456666665544443322 2223 789999999999887665
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccE
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 312 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~ 312 (789)
..|.+||+++|++..- ...+....-+.+.||+..
T Consensus 280 ----------------------------------------~~lKlwDtETG~~~~~--f~~~~~~~cvkf~pd~~n---- 313 (503)
T KOG0282|consen 280 ----------------------------------------RFLKLWDTETGQVLSR--FHLDKVPTCVKFHPDNQN---- 313 (503)
T ss_pred ----------------------------------------eeeeeeccccceEEEE--EecCCCceeeecCCCCCc----
Confidence 3577899999987655 344556678899999977
Q ss_pred EEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCe-eecCCCCCccCcceecCCCCEEEEEec
Q 003886 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSA 391 (789)
Q Consensus 313 l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~Lt~~~~~~~~p~~SpDG~~la~~s~ 391 (789)
+++++.. +..|..+|+ .++++ +..-.+.+.+....|-++|++++..+.
T Consensus 314 ~fl~G~s--------------d~ki~~wDi-----------------Rs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 314 IFLVGGS--------------DKKIRQWDI-----------------RSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred EEEEecC--------------CCcEEEEec-----------------cchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 8888743 236889998 44443 333445677888999999999877775
Q ss_pred CCCCCCCCccccceeEEeecCCCCCCCcccce----------------------e------eEEeeeeccCCCCCccccc
Q 003886 392 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI----------------------V------DVIPVVQCAEGDCFPGLYS 443 (789)
Q Consensus 392 ~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~----------------------~------~v~~~~~~~~~~~f~g~~~ 443 (789)
+. .+.+|++...-........ + .+.+.........|.|.+.
T Consensus 363 dk-----------s~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~v 431 (503)
T KOG0282|consen 363 DK-----------SVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSV 431 (503)
T ss_pred Cc-----------cEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceec
Confidence 54 3666666543322111000 0 0011111112234666655
Q ss_pred cCC-CCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCC-CCceeEEeeecC
Q 003886 444 SSI-LSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE-SNFSWSLLTLDG 499 (789)
Q Consensus 444 ~~~-~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~-~~~~~~~~s~dg 499 (789)
.+. -.+.|||||++| ++++.+ ..++.+|..|-++......+ .......|.|.-
T Consensus 432 aGys~~v~fSpDG~~l-~SGdsd--G~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e 486 (503)
T KOG0282|consen 432 AGYSCQVDFSPDGRTL-CSGDSD--GKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVE 486 (503)
T ss_pred cCceeeEEEcCCCCeE-EeecCC--ccEEEeechhhhhhhccccCCcceEEEEecCCC
Confidence 444 367799999965 454444 45666666555443333332 333333455443
No 191
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=98.71 E-value=1.6e-07 Score=92.48 Aligned_cols=247 Identities=13% Similarity=0.170 Sum_probs=147.5
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
+....|||||++|+..+-++ ++++| ..|+.++-+... .......-|....++.||-|...||..+.
T Consensus 216 ~EcA~FSPDgqyLvsgSvDG-----FiEVWny~~GKlrKDLkYQ-Aqd~fMMmd~aVlci~FSRDsEMlAsGsq------ 283 (508)
T KOG0275|consen 216 VECARFSPDGQYLVSGSVDG-----FIEVWNYTTGKLRKDLKYQ-AQDNFMMMDDAVLCISFSRDSEMLASGSQ------ 283 (508)
T ss_pred hhheeeCCCCceEeeccccc-----eeeeehhccchhhhhhhhh-hhcceeecccceEEEeecccHHHhhccCc------
Confidence 55678999999998766554 88999 467666544321 11111222334478899999988876433
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEE
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (789)
+..|.+|.+.+|...+-..-...-.+..+.||-|+.+ |
T Consensus 284 --------------------------------------DGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~Sq----i 321 (508)
T KOG0275|consen 284 --------------------------------------DGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQ----I 321 (508)
T ss_pred --------------------------------------CCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcch----h
Confidence 3568889999986533210123346788999999999 8
Q ss_pred EEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeecCCCCCccCcceecCCCCEEEEEecC
Q 003886 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (789)
Q Consensus 314 ~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~la~~s~~ 392 (789)
+..+.+. .+.+--+ .+|+ .+....+...+....|++||..|+..+.+
T Consensus 322 LS~sfD~---------------tvRiHGl-----------------KSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 322 LSASFDQ---------------TVRIHGL-----------------KSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD 369 (508)
T ss_pred hcccccc---------------eEEEecc-----------------ccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence 8776432 2333333 3333 45566677788899999999999887765
Q ss_pred CCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCC-CEEEEEEEeCCeEEEE
Q 003886 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG-CTMLLSSIWGSSQVII 471 (789)
Q Consensus 393 ~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg-~~l~~~~~~~~~~~l~ 471 (789)
. .+.+|+..+.+-...-.... .+. .+..+...|.+ ..+++. .....+|
T Consensus 370 g-----------tvkvW~~KtteC~~Tfk~~~-----------~d~------~vnsv~~~PKnpeh~iVC---Nrsntv~ 418 (508)
T KOG0275|consen 370 G-----------TVKVWHGKTTECLSTFKPLG-----------TDY------PVNSVILLPKNPEHFIVC---NRSNTVY 418 (508)
T ss_pred c-----------cEEEecCcchhhhhhccCCC-----------Ccc------cceeEEEcCCCCceEEEE---cCCCeEE
Confidence 3 47888876654321100000 000 11111122221 233332 1234588
Q ss_pred EEECCCCcEEEecCC---CCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 472 SVNVSSGELLRITPA---ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 472 ~~dl~tg~~~~lt~~---~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
.+++.+.-++..+.+ .+++....+||.|.+++++..+. .+|.+...++
T Consensus 419 imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~----vlYCF~~~sG 469 (508)
T KOG0275|consen 419 IMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDG----VLYCFSVLSG 469 (508)
T ss_pred EEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCc----EEEEEEeecC
Confidence 888854444444443 23555567899999999888654 3666665444
No 192
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.71 E-value=2.8e-06 Score=91.65 Aligned_cols=262 Identities=14% Similarity=0.111 Sum_probs=129.0
Q ss_pred EEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCC
Q 003886 157 SAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235 (789)
Q Consensus 157 ~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~ 235 (789)
....+||||++++... ++ + .+-.++ ...+..+.+...... .++++||||++|+.....
T Consensus 40 ~~~~~s~Dgr~~yv~~-rd-g--~vsviD~~~~~~v~~i~~G~~~----------~~i~~s~DG~~~~v~n~~------- 98 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVAN-RD-G--TVSVIDLATGKVVATIKVGGNP----------RGIAVSPDGKYVYVANYE------- 98 (369)
T ss_dssp EEEE-TT-SSEEEEEE-TT-S--EEEEEETTSSSEEEEEE-SSEE----------EEEEE--TTTEEEEEEEE-------
T ss_pred eEEEecCCCCEEEEEc-CC-C--eEEEEECCcccEEEEEecCCCc----------ceEEEcCCCCEEEEEecC-------
Confidence 4567999999976654 33 2 466677 566666666665444 689999999988665332
Q ss_pred ccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCC---C---CCccceEEEeeCCCCC
Q 003886 236 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP---K---SLSVGQVVWAPLNEGL 309 (789)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~---~---~~~~~~~~wSPDg~~~ 309 (789)
.+.+.++|.++.++.....+. . ...+..+.-||+...
T Consensus 99 ------------------------------------~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~- 141 (369)
T PF02239_consen 99 ------------------------------------PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPE- 141 (369)
T ss_dssp ------------------------------------TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSE-
T ss_pred ------------------------------------CCceeEeccccccceeecccccccccccCCCceeEEecCCCCE-
Confidence 267889999888765431011 1 112345566777775
Q ss_pred ccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCe--eecCCCCCccCcceecCCCCEEE
Q 003886 310 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV--VNLTESISSAFFPRFSPDGKFLV 387 (789)
Q Consensus 310 ~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~Lt~~~~~~~~p~~SpDG~~la 387 (789)
.++.-.+ ..+||.+|.. +.... +.+. .......-.|+|||++++
T Consensus 142 ---fVv~lkd--------------~~~I~vVdy~----------------d~~~~~~~~i~-~g~~~~D~~~dpdgry~~ 187 (369)
T PF02239_consen 142 ---FVVNLKD--------------TGEIWVVDYS----------------DPKNLKVTTIK-VGRFPHDGGFDPDGRYFL 187 (369)
T ss_dssp ---EEEEETT--------------TTEEEEEETT----------------TSSCEEEEEEE---TTEEEEEE-TTSSEEE
T ss_pred ---EEEEEcc--------------CCeEEEEEec----------------cccccceeeec-ccccccccccCcccceee
Confidence 5554422 2379999862 11111 2221 122344568999999876
Q ss_pred EEecCCCCCCCCccccceeEEeecCCCCCCCccc---ce----------------e-------eEEeeeeccCC-----C
Q 003886 388 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLE---KI----------------V-------DVIPVVQCAEG-----D 436 (789)
Q Consensus 388 ~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~---~~----------------~-------~v~~~~~~~~~-----~ 436 (789)
-..+.. +.|-++|..+++...+.. .. + ..++.+..... .
T Consensus 188 va~~~s----------n~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~ 257 (369)
T PF02239_consen 188 VAANGS----------NKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDY 257 (369)
T ss_dssp EEEGGG----------TEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTT
T ss_pred eccccc----------ceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhh
Confidence 544332 245555554432211100 00 0 00011110000 0
Q ss_pred CCcc---ccc-cCCCCCccccCCCEEEEEEE-eCCeEEEEEEECCCCcEE-EecCCCC-CceeEEeeecCCEEEEEEeCC
Q 003886 437 CFPG---LYS-SSILSNPWLSDGCTMLLSSI-WGSSQVIISVNVSSGELL-RITPAES-NFSWSLLTLDGDNIIAVSSSP 509 (789)
Q Consensus 437 ~f~g---~~~-~~~~~~~ws~Dg~~l~~~~~-~~~~~~l~~~dl~tg~~~-~lt~~~~-~~~~~~~s~dg~~l~~~~ss~ 509 (789)
.+.- +-. ....-+.-+||++++++... ......|..+|..+-++. .+....+ ......|++||++++++.-..
T Consensus 258 ~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~ 337 (369)
T PF02239_consen 258 AWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDG 337 (369)
T ss_dssp BTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--
T ss_pred cCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecC
Confidence 0000 000 01122345899999988622 233567999998887653 4443322 245678999999998877665
Q ss_pred CCCCeEEEEeecc
Q 003886 510 VDVPQVKYGYFVD 522 (789)
Q Consensus 510 ~~p~~i~~~~~~~ 522 (789)
.. .|.++|..+
T Consensus 338 ~~--~i~v~D~~T 348 (369)
T PF02239_consen 338 NG--AIVVYDAKT 348 (369)
T ss_dssp TT--EEEEEETTT
T ss_pred CC--EEEEEECCC
Confidence 54 688888543
No 193
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.71 E-value=4.9e-06 Score=91.14 Aligned_cols=231 Identities=17% Similarity=0.149 Sum_probs=151.4
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
.+...+|+--|.+|||....- ..+.+|. ..+. -+... +++-..+ ..+..||||+.||..+++
T Consensus 309 ~I~t~~~N~tGDWiA~g~~kl----gQLlVweWqsEs-YVlKQ-QgH~~~i------~~l~YSpDgq~iaTG~eD----- 371 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSKL----GQLLVWEWQSES-YVLKQ-QGHSDRI------TSLAYSPDGQLIATGAED----- 371 (893)
T ss_pred eeeEEEecccCCEEEEcCCcc----ceEEEEEeeccc-eeeec-cccccce------eeEEECCCCcEEEeccCC-----
Confidence 477889999999999965431 2456663 2221 11111 1111112 689999999999987665
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEE
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (789)
..|.+||..+|-..... +.....+..+.|+.+|+. |
T Consensus 372 ---------------------------------------gKVKvWn~~SgfC~vTF-teHts~Vt~v~f~~~g~~----l 407 (893)
T KOG0291|consen 372 ---------------------------------------GKVKVWNTQSGFCFVTF-TEHTSGVTAVQFTARGNV----L 407 (893)
T ss_pred ---------------------------------------CcEEEEeccCceEEEEe-ccCCCceEEEEEEecCCE----E
Confidence 34778898887544331 344557889999999996 6
Q ss_pred EEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCC-ccCcceecCCCCEEEEEecC
Q 003886 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS-SAFFPRFSPDGKFLVFLSAK 392 (789)
Q Consensus 314 ~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~-~~~~p~~SpDG~~la~~s~~ 392 (789)
+..+- +..+..+|+. .....+.+|.... .....+.-|.|. |++....
T Consensus 408 lssSL---------------DGtVRAwDlk----------------RYrNfRTft~P~p~QfscvavD~sGe-lV~AG~~ 455 (893)
T KOG0291|consen 408 LSSSL---------------DGTVRAWDLK----------------RYRNFRTFTSPEPIQFSCVAVDPSGE-LVCAGAQ 455 (893)
T ss_pred EEeec---------------CCeEEeeeec----------------ccceeeeecCCCceeeeEEEEcCCCC-EEEeecc
Confidence 65553 2356666661 2334455554432 234455566687 5555544
Q ss_pred CCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003886 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (789)
Q Consensus 393 ~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (789)
+ ...|++|++++|+...+..+... .+..++|+|+|. ++++++|+.+.++|.
T Consensus 456 d---------~F~IfvWS~qTGqllDiLsGHEg-------------------PVs~l~f~~~~~-~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 456 D---------SFEIFVWSVQTGQLLDILSGHEG-------------------PVSGLSFSPDGS-LLASGSWDKTVRIWD 506 (893)
T ss_pred c---------eEEEEEEEeecCeeeehhcCCCC-------------------cceeeEEccccC-eEEeccccceEEEEE
Confidence 3 36799999999988765554421 245678999998 668889999999998
Q ss_pred EECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeC
Q 003886 473 VNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSS 508 (789)
Q Consensus 473 ~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss 508 (789)
+=-..|+.+.+.-... .....|+|||+.++....+
T Consensus 507 if~s~~~vEtl~i~sd-vl~vsfrPdG~elaVaTld 541 (893)
T KOG0291|consen 507 IFSSSGTVETLEIRSD-VLAVSFRPDGKELAVATLD 541 (893)
T ss_pred eeccCceeeeEeeccc-eeEEEEcCCCCeEEEEEec
Confidence 7766677777754443 3456899999998766543
No 194
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.71 E-value=2.3e-06 Score=81.88 Aligned_cols=253 Identities=15% Similarity=0.115 Sum_probs=149.0
Q ss_pred eEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCC--CCCCcCCCCCCC
Q 003886 180 IQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKG--GSSDKDCNSWKG 255 (789)
Q Consensus 180 ~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 255 (789)
..+.+| ..|...+.++.+ |.+...+..+||++.||-+.... ...++....+. ......+..-+.
T Consensus 20 hTIRfWqa~tG~C~rTiqh~---------dsqVNrLeiTpdk~~LAaa~~qh---vRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 20 HTIRFWQALTGICSRTIQHP---------DSQVNRLEITPDKKDLAAAGNQH---VRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred ceeeeeehhcCeEEEEEecC---------ccceeeEEEcCCcchhhhccCCe---eEEEEccCCCCCceeEEeccCCceE
Confidence 457777 466666666543 22347899999999998765432 11222211111 111112212222
Q ss_pred cceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCc
Q 003886 256 QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 335 (789)
Q Consensus 256 ~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~ 335 (789)
...|..|+.--|++..+..+.+||+..-..+++ ......+..+...|.-.. | +++. +..
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~--~~~~spVn~vvlhpnQte----L-is~d--------------qsg 146 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRN--YQHNSPVNTVVLHPNQTE----L-ISGD--------------QSG 146 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEEeccCcccchh--ccCCCCcceEEecCCcce----E-Eeec--------------CCC
Confidence 344666665567777889999999988666665 344567788999997665 4 4443 334
Q ss_pred ceEEEecccccchhhhhhhhcCCCCCCCeeecCC-CCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCC
Q 003886 336 ALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (789)
Q Consensus 336 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~-~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~ 414 (789)
+|+++|+. +..-.++|.. ....+.+...-|||+.|+-..+++ .+|+|++-++
T Consensus 147 ~irvWDl~----------------~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG-----------~cyvW~l~~~ 199 (311)
T KOG0315|consen 147 NIRVWDLG----------------ENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKG-----------NCYVWRLLNH 199 (311)
T ss_pred cEEEEEcc----------------CCccccccCCCCCcceeeEEEcCCCcEEEEecCCc-----------cEEEEEccCC
Confidence 79999982 2222334443 345688899999999998766553 5899998764
Q ss_pred CCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCC-cEEEecCCCC-Ccee
Q 003886 415 GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSG-ELLRITPAES-NFSW 492 (789)
Q Consensus 415 ~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg-~~~~lt~~~~-~~~~ 492 (789)
... ..+.++.+.+. ..+.+....+|||+++|+-. +.+....||..+ +- +.+..+..+. ....
T Consensus 200 ~~~------s~l~P~~k~~a-------h~~~il~C~lSPd~k~lat~-ssdktv~iwn~~--~~~kle~~l~gh~rWvWd 263 (311)
T KOG0315|consen 200 QTA------SELEPVHKFQA-------HNGHILRCLLSPDVKYLATC-SSDKTVKIWNTD--DFFKLELVLTGHQRWVWD 263 (311)
T ss_pred Ccc------ccceEhhheec-------ccceEEEEEECCCCcEEEee-cCCceEEEEecC--CceeeEEEeecCCceEEe
Confidence 332 12333332221 11234566799999977543 344455566554 43 4444444442 2333
Q ss_pred EEeeecCCEEEEEEeC
Q 003886 493 SLLTLDGDNIIAVSSS 508 (789)
Q Consensus 493 ~~~s~dg~~l~~~~ss 508 (789)
-.||.||.+|+...++
T Consensus 264 c~FS~dg~YlvTassd 279 (311)
T KOG0315|consen 264 CAFSADGEYLVTASSD 279 (311)
T ss_pred eeeccCccEEEecCCC
Confidence 5899999887655544
No 195
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=98.70 E-value=5.2e-08 Score=100.92 Aligned_cols=112 Identities=16% Similarity=0.218 Sum_probs=77.1
Q ss_pred CCCcEEEEEcCCCCCCCchhhHHH-HH-HHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCC
Q 003886 590 SCDPLIVVLHGGPHSVSLSSYSKS-LA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~-~~-~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (789)
...|++|++||...+. ...|... .. ++...+|.|+++|+++... ....... ... ..-.+++.+.++++.++..
T Consensus 34 ~~~p~vilIHG~~~~~-~~~~~~~l~~~ll~~~~~nVi~vD~~~~~~--~~y~~a~-~~~-~~v~~~la~~l~~L~~~~g 108 (275)
T cd00707 34 PSRPTRFIIHGWTSSG-EESWISDLRKAYLSRGDYNVIVVDWGRGAN--PNYPQAV-NNT-RVVGAELAKFLDFLVDNTG 108 (275)
T ss_pred CCCCcEEEEcCCCCCC-CCcHHHHHHHHHHhcCCCEEEEEECccccc--cChHHHH-HhH-HHHHHHHHHHHHHHHHhcC
Confidence 3568999999976643 2344333 33 4445689999999986311 1110000 000 1113567778888887644
Q ss_pred CCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
++.++|.|+|||+||.++..++.+.|++++.+++..|..
T Consensus 109 ~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa~ 147 (275)
T cd00707 109 LSLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPAG 147 (275)
T ss_pred CChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCCc
Confidence 678899999999999999999999999999999998754
No 196
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=98.68 E-value=1.1e-07 Score=92.70 Aligned_cols=116 Identities=22% Similarity=0.356 Sum_probs=80.0
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHH-HCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHH
Q 003886 575 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 653 (789)
Q Consensus 575 ~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la-~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~ 653 (789)
++..++-.|. .+..|++++.|||+.+ .-+|....+.+. ..-..++++|.|| +|++-.+.-..--.....+
T Consensus 61 t~n~Y~t~~~----~t~gpil~l~HG~G~S--~LSfA~~a~el~s~~~~r~~a~DlRg---HGeTk~~~e~dlS~eT~~K 131 (343)
T KOG2564|consen 61 TFNVYLTLPS----ATEGPILLLLHGGGSS--ALSFAIFASELKSKIRCRCLALDLRG---HGETKVENEDDLSLETMSK 131 (343)
T ss_pred eEEEEEecCC----CCCccEEEEeecCccc--chhHHHHHHHHHhhcceeEEEeeccc---cCccccCChhhcCHHHHHH
Confidence 6777777773 5678999999998875 567777777665 3457889999999 6655433211111222367
Q ss_pred HHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhC--CCceeEEEEeC
Q 003886 654 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARN 703 (789)
Q Consensus 654 D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~--p~~~~a~v~~~ 703 (789)
|+.+.++++... ++.+|.|+||||||.++.+.+... |. +.+++.+.
T Consensus 132 D~~~~i~~~fge---~~~~iilVGHSmGGaIav~~a~~k~lps-l~Gl~viD 179 (343)
T KOG2564|consen 132 DFGAVIKELFGE---LPPQIILVGHSMGGAIAVHTAASKTLPS-LAGLVVID 179 (343)
T ss_pred HHHHHHHHHhcc---CCCceEEEeccccchhhhhhhhhhhchh-hhceEEEE
Confidence 888888887644 356799999999999998877642 43 44555443
No 197
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.68 E-value=1.9e-06 Score=86.57 Aligned_cols=215 Identities=17% Similarity=0.230 Sum_probs=118.4
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe---cCCceeEEEecCCCccccccCC---CcccceeecCCCCEEEEEee
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW---SQSQLEKEFHVPQTVHGSVYAD---GWFEGISWNSDETLIAYVAE 227 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~---~~~~~~~~~~~~~~~~g~v~~d---~~~~~~~wSpDg~~la~~~~ 227 (789)
.++...+|-|-+...+.+.-+. =+.+| ......+....-...|+.|.-+ ..+..+.|.+||..++-++.
T Consensus 141 rnvtclawRPlsaselavgCr~-----gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~ 215 (445)
T KOG2139|consen 141 RNVTCLAWRPLSASELAVGCRA-----GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASF 215 (445)
T ss_pred cceeEEEeccCCcceeeeeecc-----eeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeeccc
Confidence 4688899999887655444332 24555 2333333222212222222211 12378999999999887654
Q ss_pred cCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCC-CCccceEEEeeCC
Q 003886 228 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-SLSVGQVVWAPLN 306 (789)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~-~~~~~~~~wSPDg 306 (789)
. ..+|.+||+++|...+| .+. ..++.-..|||||
T Consensus 216 g-------------------------------------------sssi~iWdpdtg~~~pL--~~~glgg~slLkwSPdg 250 (445)
T KOG2139|consen 216 G-------------------------------------------SSSIMIWDPDTGQKIPL--IPKGLGGFSLLKWSPDG 250 (445)
T ss_pred C-------------------------------------------cceEEEEcCCCCCcccc--cccCCCceeeEEEcCCC
Confidence 3 36899999999988888 333 3356688999999
Q ss_pred CCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEE
Q 003886 307 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFL 386 (789)
Q Consensus 307 ~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l 386 (789)
.. | |.+.-+. -..||...- .-+.+ +... +.+.+....|||+|++|
T Consensus 251 d~----l-faAt~da------------vfrlw~e~q----------------~wt~e-rw~l-gsgrvqtacWspcGsfL 295 (445)
T KOG2139|consen 251 DV----L-FAATCDA------------VFRLWQENQ----------------SWTKE-RWIL-GSGRVQTACWSPCGSFL 295 (445)
T ss_pred CE----E-EEecccc------------eeeeehhcc----------------cceec-ceec-cCCceeeeeecCCCCEE
Confidence 96 4 4441111 112332221 01222 2222 23478889999999999
Q ss_pred EEEecCCCCCCCCccccceeEEeecCCCCCCCc-ccceeeEEeeeeccCCC--CCccccccCCCCCccccCCCEEEEEEE
Q 003886 387 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS-LEKIVDVIPVVQCAEGD--CFPGLYSSSILSNPWLSDGCTMLLSSI 463 (789)
Q Consensus 387 a~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~-t~~~~~v~~~~~~~~~~--~f~g~~~~~~~~~~ws~Dg~~l~~~~~ 463 (789)
+|....+ ..||....++...... ..+...+..+.+.++-. ....+-+.....++|.|.|.+|.++-.
T Consensus 296 Lf~~sgs----------p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK 365 (445)
T KOG2139|consen 296 LFACSGS----------PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK 365 (445)
T ss_pred EEEEcCC----------ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence 9998654 3466665544322111 11222222222211100 001122344567889999988876543
No 198
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.67 E-value=2.8e-07 Score=87.50 Aligned_cols=209 Identities=16% Similarity=0.091 Sum_probs=112.9
Q ss_pred ecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCC
Q 003886 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (789)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~ 648 (789)
...||..+.+..+... .+.+--+++-|+++. ....|..+.+.++.+||.|+.+||||.++.-........-.+.
T Consensus 11 ~~~DG~~l~~~~~pA~-----~~~~g~~~va~a~Gv-~~~fYRrfA~~a~~~Gf~Vlt~dyRG~g~S~p~~~~~~~~~~~ 84 (281)
T COG4757 11 PAPDGYSLPGQRFPAD-----GKASGRLVVAGATGV-GQYFYRRFAAAAAKAGFEVLTFDYRGIGQSRPASLSGSQWRYL 84 (281)
T ss_pred ccCCCccCccccccCC-----CCCCCcEEecccCCc-chhHhHHHHHHhhccCceEEEEecccccCCCccccccCccchh
Confidence 4558888888777543 233323333454442 3445667788889999999999999954432222211112222
Q ss_pred cccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCC-CC---Ccchhhh
Q 003886 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT-DI---PDWCYVE 724 (789)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~-~~---~~~~~~~ 724 (789)
.....|+.++++++.+. ........+|||+||.+...+.. ++ ++.+.....-...+...++.. .. .-|+..-
T Consensus 85 DwA~~D~~aal~~~~~~--~~~~P~y~vgHS~GGqa~gL~~~-~~-k~~a~~vfG~gagwsg~m~~~~~l~~~~l~~lv~ 160 (281)
T COG4757 85 DWARLDFPAALAALKKA--LPGHPLYFVGHSFGGQALGLLGQ-HP-KYAAFAVFGSGAGWSGWMGLRERLGAVLLWNLVG 160 (281)
T ss_pred hhhhcchHHHHHHHHhh--CCCCceEEeeccccceeeccccc-Cc-ccceeeEeccccccccchhhhhcccceeeccccc
Confidence 33367899999998875 24567899999999988775544 55 343333222222222111110 00 0010000
Q ss_pred hc---cCccc-cccCCCC----C--------hhhHHHHHhcCcc-----ccCCCCCCCEEEEEeCCCCCCChHHHHHHHH
Q 003886 725 SY---GSKGK-DSFTESP----S--------VEDLTRFHSKSPI-----SHISKVKTPTIFLLGAQDLRVPVSNGLQVIY 783 (789)
Q Consensus 725 ~~---~~~~~-~~~~~~~----~--------~~~~~~~~~~sp~-----~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~ 783 (789)
.. -...+ ..+.+.. . |.....|...+|. ...+.+++|++.+...+|+.+|+.....|.+
T Consensus 161 p~lt~w~g~~p~~l~G~G~d~p~~v~RdW~RwcR~p~y~fddp~~~~~~q~yaaVrtPi~~~~~~DD~w~P~As~d~f~~ 240 (281)
T COG4757 161 PPLTFWKGYMPKDLLGLGSDLPGTVMRDWARWCRHPRYYFDDPAMRNYRQVYAAVRTPITFSRALDDPWAPPASRDAFAS 240 (281)
T ss_pred cchhhccccCcHhhcCCCccCcchHHHHHHHHhcCccccccChhHhHHHHHHHHhcCceeeeccCCCCcCCHHHHHHHHH
Confidence 00 00000 0001111 0 0011111122221 1246789999999999999999998888877
Q ss_pred HCCC
Q 003886 784 HIPF 787 (789)
Q Consensus 784 ~l~~ 787 (789)
..++
T Consensus 241 ~y~n 244 (281)
T COG4757 241 FYRN 244 (281)
T ss_pred hhhc
Confidence 6654
No 199
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.66 E-value=4.1e-07 Score=100.19 Aligned_cols=121 Identities=15% Similarity=0.202 Sum_probs=76.9
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchh---hHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCccc-
Q 003886 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS---YSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD- 651 (789)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~---~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~- 651 (789)
++-+.|.|.. +...+.|++ +++....-.+... -...+++|.++||.|+++|.+. ++ .+. ..++-.+
T Consensus 201 ~eLiqY~P~t-e~v~~~PLL-IVPp~INK~YIlDL~P~~SlVr~lv~qG~~VflIsW~n-P~--~~~-----r~~~ldDY 270 (560)
T TIGR01839 201 LELIQYKPIT-EQQHARPLL-VVPPQINKFYIFDLSPEKSFVQYCLKNQLQVFIISWRN-PD--KAH-----REWGLSTY 270 (560)
T ss_pred eEEEEeCCCC-CCcCCCcEE-EechhhhhhheeecCCcchHHHHHHHcCCeEEEEeCCC-CC--hhh-----cCCCHHHH
Confidence 4455666752 123344554 4555222111111 1236789999999999999986 22 211 1232222
Q ss_pred HHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHH----HHHhCCC-ceeEEEEeCCccch
Q 003886 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTH----LIGQAPD-KFVAAAARNPLCNL 708 (789)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~----~~~~~p~-~~~a~v~~~pv~~~ 708 (789)
++.+.++++.+.+. ...++|.++|+|+||.+++. +++++++ +++.+++.+..+|+
T Consensus 271 v~~i~~Ald~V~~~--tG~~~vnl~GyC~GGtl~a~~~a~~aA~~~~~~V~sltllatplDf 330 (560)
T TIGR01839 271 VDALKEAVDAVRAI--TGSRDLNLLGACAGGLTCAALVGHLQALGQLRKVNSLTYLVSLLDS 330 (560)
T ss_pred HHHHHHHHHHHHHh--cCCCCeeEEEECcchHHHHHHHHHHHhcCCCCceeeEEeeeccccc
Confidence 34666777777665 45688999999999999986 6777775 89999988776665
No 200
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=98.66 E-value=1.8e-07 Score=101.19 Aligned_cols=112 Identities=13% Similarity=0.091 Sum_probs=76.2
Q ss_pred CCcEEEEEcCCCCCCCchhhHH-HHHHHHH--CCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCC
Q 003886 591 CDPLIVVLHGGPHSVSLSSYSK-SLAFLSS--VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~-~~~~la~--~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (789)
..|++|++||...+.....|.. ....|.. ..|.|+++|++| +|.+...... .....-.+++.+.+++|.+...
T Consensus 40 ~~ptvIlIHG~~~s~~~~~w~~~l~~al~~~~~d~nVI~VDw~g---~g~s~y~~a~-~~t~~vg~~la~lI~~L~~~~g 115 (442)
T TIGR03230 40 ETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLS---RAQQHYPTSA-AYTKLVGKDVAKFVNWMQEEFN 115 (442)
T ss_pred CCCeEEEECCCCcCCcchhhHHHHHHHHHhccCCCEEEEEECCC---cCCCCCcccc-ccHHHHHHHHHHHHHHHHHhhC
Confidence 4689999999765432234544 3334432 369999999987 3332211100 1111113566777888776533
Q ss_pred CCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
++.+++.|+|||+||.++..++.+.|+++..+++..|..
T Consensus 116 l~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPAg 154 (442)
T TIGR03230 116 YPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPAG 154 (442)
T ss_pred CCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCCC
Confidence 678999999999999999999998899999999998853
No 201
>PTZ00420 coronin; Provisional
Probab=98.65 E-value=8.3e-06 Score=91.79 Aligned_cols=156 Identities=13% Similarity=0.075 Sum_probs=94.7
Q ss_pred eCCCCCeEEEEecCC-CCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCC-CCEEEEEeecCCCCCCCccC
Q 003886 161 PSPSGSKLLVVRNPE-NESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSD-ETLIAYVAEEPSPSKPTFSL 238 (789)
Q Consensus 161 ~SPdG~~la~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpD-g~~la~~~~~~~~~~~~~~~ 238 (789)
.+.+++++|+.-... ++...++.+|..++...+..+. +..+.| ..++|+|+ +..||..+.+
T Consensus 34 ia~n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~~L~-gH~~~V------~~lafsP~~~~lLASgS~D---------- 96 (568)
T PTZ00420 34 IACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKLK-GHTSSI------LDLQFNPCFSEILASGSED---------- 96 (568)
T ss_pred EeeCCCeEEEEEEcCCCCceeEEEeeecCCCceEEEEc-CCCCCE------EEEEEcCCCCCEEEEEeCC----------
Confidence 455567777765443 2334567777544433333332 223344 79999997 6777765443
Q ss_pred CCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCce---------EeccCCCCCCccceEEEeeCCCCC
Q 003886 239 GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV---------QAVKGIPKSLSVGQVVWAPLNEGL 309 (789)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~---------~~l~~~~~~~~~~~~~wSPDg~~~ 309 (789)
..|.+||+.++.. ..+ ......+..++|+|++..
T Consensus 97 ----------------------------------gtIrIWDi~t~~~~~~~i~~p~~~L--~gH~~~V~sVaf~P~g~~- 139 (568)
T PTZ00420 97 ----------------------------------LTIRVWEIPHNDESVKEIKDPQCIL--KGHKKKISIIDWNPMNYY- 139 (568)
T ss_pred ----------------------------------CeEEEEECCCCCccccccccceEEe--ecCCCcEEEEEECCCCCe-
Confidence 4577788764321 112 112335778999999987
Q ss_pred ccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeecCCCCCccCcceecCCCCEEEE
Q 003886 310 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVF 388 (789)
Q Consensus 310 ~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~la~ 388 (789)
++.++. .+..|.++|+ .+++ ...+. ....+...+|+|||+.|+.
T Consensus 140 ---iLaSgS--------------~DgtIrIWDl-----------------~tg~~~~~i~-~~~~V~SlswspdG~lLat 184 (568)
T PTZ00420 140 ---IMCSSG--------------FDSFVNIWDI-----------------ENEKRAFQIN-MPKKLSSLKWNIKGNLLSG 184 (568)
T ss_pred ---EEEEEe--------------CCCeEEEEEC-----------------CCCcEEEEEe-cCCcEEEEEECCCCCEEEE
Confidence 765542 1236778887 3333 33333 3345788999999998876
Q ss_pred EecCCCCCCCCccccceeEEeecCCCCC
Q 003886 389 LSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (789)
Q Consensus 389 ~s~~~~~~~g~~~~~~~L~~~d~~~~~~ 416 (789)
.+.+ ..|.+||+.++..
T Consensus 185 ~s~D-----------~~IrIwD~Rsg~~ 201 (568)
T PTZ00420 185 TCVG-----------KHMHIIDPRKQEI 201 (568)
T ss_pred EecC-----------CEEEEEECCCCcE
Confidence 5533 2599999887543
No 202
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=98.65 E-value=2.8e-06 Score=88.28 Aligned_cols=233 Identities=13% Similarity=0.090 Sum_probs=136.4
Q ss_pred EEecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCC
Q 003886 100 TFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESP 179 (789)
Q Consensus 100 ~~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~ 179 (789)
..-.|+.||..+|+-. ..+++.+++. ++.....|.... +.+.+..|+-+|.+|+-..-.+
T Consensus 239 T~L~Wn~~G~~LatG~---------~~G~~riw~~--~G~l~~tl~~Hk-----gPI~slKWnk~G~yilS~~vD~---- 298 (524)
T KOG0273|consen 239 TSLDWNNDGTLLATGS---------EDGEARIWNK--DGNLISTLGQHK-----GPIFSLKWNKKGTYILSGGVDG---- 298 (524)
T ss_pred ceEEecCCCCeEEEee---------cCcEEEEEec--CchhhhhhhccC-----CceEEEEEcCCCCEEEeccCCc----
Confidence 3445778888777643 4456666654 444443343333 5588999999999998754332
Q ss_pred eEEEEec--CCceeEEEecCCCc-----------------cccc---------------cCCCcccceeecCCCCEEEEE
Q 003886 180 IQFELWS--QSQLEKEFHVPQTV-----------------HGSV---------------YADGWFEGISWNSDETLIAYV 225 (789)
Q Consensus 180 ~~~~i~~--~~~~~~~~~~~~~~-----------------~g~v---------------~~d~~~~~~~wSpDg~~la~~ 225 (789)
...+|+ .|+..+.+.+.... .+.+ --++.+..+.|.|-|+.|+..
T Consensus 299 -ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~ 377 (524)
T KOG0273|consen 299 -TTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASC 377 (524)
T ss_pred -cEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEe
Confidence 333442 23333332221000 0000 012233788999999999988
Q ss_pred eecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccc---------cCCccCceEEEEEccCCceEeccCCCCCCc
Q 003886 226 AEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGET---------YAGKRQPSLFVININSGEVQAVKGIPKSLS 296 (789)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~---------~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~ 296 (789)
+.+.+.+ .|.............+..-++...|+|+..-. +....+..+.+||+..|...... +.....
T Consensus 378 SdD~Tlk--iWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f-~kH~~p 454 (524)
T KOG0273|consen 378 SDDGTLK--IWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL-MKHQEP 454 (524)
T ss_pred cCCCeeE--eeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee-ccCCCc
Confidence 8776543 34432222222222333233333455543211 12223577889999998766542 345567
Q ss_pred cceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCc
Q 003886 297 VGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFF 376 (789)
Q Consensus 297 ~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~ 376 (789)
+..++|||||++ +++.+ +...|..++. .+++..+-..+.+.++.
T Consensus 455 VysvafS~~g~y----lAsGs---------------~dg~V~iws~-----------------~~~~l~~s~~~~~~Ife 498 (524)
T KOG0273|consen 455 VYSVAFSPNGRY----LASGS---------------LDGCVHIWST-----------------KTGKLVKSYQGTGGIFE 498 (524)
T ss_pred eEEEEecCCCcE----EEecC---------------CCCeeEeccc-----------------cchheeEeecCCCeEEE
Confidence 889999999998 88776 2335666666 45555544455566899
Q ss_pred ceecCCCCEEEEEecC
Q 003886 377 PRFSPDGKFLVFLSAK 392 (789)
Q Consensus 377 p~~SpDG~~la~~s~~ 392 (789)
..|+-+|.+|.-...+
T Consensus 499 l~Wn~~G~kl~~~~sd 514 (524)
T KOG0273|consen 499 LCWNAAGDKLGACASD 514 (524)
T ss_pred EEEcCCCCEEEEEecC
Confidence 9999999988765544
No 203
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.63 E-value=2.5e-06 Score=89.37 Aligned_cols=271 Identities=13% Similarity=0.071 Sum_probs=146.3
Q ss_pred cccceeEEEEEEeecCCCCc---cceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcee-EEEecC
Q 003886 122 ANKRKKFMLSTVISKENENS---VTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLE-KEFHVP 197 (789)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~~---~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~-~~~~~~ 197 (789)
++.....+..|+..+=.... ++| .|.+...+...+|||.|..|+.++.. .|..+++.+|-.. ......
T Consensus 184 sGs~Dy~v~~wDf~gMdas~~~fr~l----~P~E~h~i~sl~ys~Tg~~iLvvsg~----aqakl~DRdG~~~~e~~KGD 255 (641)
T KOG0772|consen 184 SGSLDYTVKFWDFQGMDASMRSFRQL----QPCETHQINSLQYSVTGDQILVVSGS----AQAKLLDRDGFEIVEFSKGD 255 (641)
T ss_pred eccccceEEEEecccccccchhhhcc----CcccccccceeeecCCCCeEEEEecC----cceeEEccCCceeeeeeccc
Confidence 44566677788774432222 222 24444568889999999999998644 3566666544322 222111
Q ss_pred CC------ccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCcc
Q 003886 198 QT------VHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKR 271 (789)
Q Consensus 198 ~~------~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~ 271 (789)
+- ..|.+ ..+.+..|.|+.+..+..+..+
T Consensus 256 QYI~Dm~nTKGHi---a~lt~g~whP~~k~~FlT~s~D------------------------------------------ 290 (641)
T KOG0772|consen 256 QYIRDMYNTKGHI---AELTCGCWHPDNKEEFLTCSYD------------------------------------------ 290 (641)
T ss_pred hhhhhhhccCCce---eeeeccccccCcccceEEecCC------------------------------------------
Confidence 11 11111 1335778999988776654432
Q ss_pred CceEEEEEccCCc--eEeccC---CCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEeccccc
Q 003886 272 QPSLFVININSGE--VQAVKG---IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 346 (789)
Q Consensus 272 ~~~l~v~d~~~g~--~~~l~~---~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 346 (789)
..|.+||+..-+ .+.++. -...+.+..-+|+|||+. |+-... +..|-.++...
T Consensus 291 -gtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~----iAagc~---------------DGSIQ~W~~~~-- 348 (641)
T KOG0772|consen 291 -GTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL----IAAGCL---------------DGSIQIWDKGS-- 348 (641)
T ss_pred -CcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcch----hhhccc---------------CCceeeeecCC--
Confidence 345555554322 122210 112335668899999998 776542 12344444311
Q ss_pred chhhhhhhhcCCCCCCC----eeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccc
Q 003886 347 SEASELELKESSSEDLP----VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK 422 (789)
Q Consensus 347 ~~~~~~~~~~~~~~~~~----~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~ 422 (789)
-+.. ++.-......++..+||+||++|+.-+.++ .|.+||+..-++ ++...
T Consensus 349 -------------~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~-----------tLKvWDLrq~kk-pL~~~ 403 (641)
T KOG0772|consen 349 -------------RTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDD-----------TLKVWDLRQFKK-PLNVR 403 (641)
T ss_pred -------------cccccceEeeeccCCCCceeEEEeccccchhhhccCCC-----------ceeeeecccccc-chhhh
Confidence 1111 111112223688999999999997666543 589999865332 11100
Q ss_pred eeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEe----CCeEEEEEEECCCCc-EEEecCCCCCceeEEeee
Q 003886 423 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW----GSSQVIISVNVSSGE-LLRITPAESNFSWSLLTL 497 (789)
Q Consensus 423 ~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~----~~~~~l~~~dl~tg~-~~~lt~~~~~~~~~~~s~ 497 (789)
..+ ...|+ ....+||||.+ |++++.. .....|+.+|..+=+ +.+|--....+....|.|
T Consensus 404 -tgL--------~t~~~------~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whp 467 (641)
T KOG0772|consen 404 -TGL--------PTPFP------GTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHP 467 (641)
T ss_pred -cCC--------CccCC------CCccccCCCce-EEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecc
Confidence 000 01222 24678999987 6666542 133468888865533 334433333344456777
Q ss_pred cCCEEEEEEeC
Q 003886 498 DGDNIIAVSSS 508 (789)
Q Consensus 498 dg~~l~~~~ss 508 (789)
.=+.|++.+.+
T Consensus 468 kLNQi~~gsgd 478 (641)
T KOG0772|consen 468 KLNQIFAGSGD 478 (641)
T ss_pred hhhheeeecCC
Confidence 66666655554
No 204
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=98.60 E-value=6.8e-07 Score=93.12 Aligned_cols=105 Identities=31% Similarity=0.475 Sum_probs=68.3
Q ss_pred cCCCCCCCchhhH-HHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHc----CCCCCccE
Q 003886 599 HGGPHSVSLSSYS-KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM----GLANPSKV 673 (789)
Q Consensus 599 HGg~~~~~~~~~~-~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~----~~~d~~rv 673 (789)
||.+.......+. ..++.+.++||+|+++||-| .|..+. .+..+-..++++++.+.+. +.-...++
T Consensus 3 ~~~~~~~~~~~~e~~~l~~~L~~GyaVv~pDY~G---lg~~y~------~~~~~a~avLD~vRAA~~~~~~~gl~~~~~v 73 (290)
T PF03583_consen 3 FGAPLSTVGTEYEAPFLAAWLARGYAVVAPDYEG---LGTPYL------NGRSEAYAVLDAVRAARNLPPKLGLSPSSRV 73 (290)
T ss_pred CCCCCccchhHhHHHHHHHHHHCCCEEEecCCCC---CCCccc------CcHhHHHHHHHHHHHHHhcccccCCCCCCCE
Confidence 4544433323333 35567889999999999987 444332 1223344455555555442 22235799
Q ss_pred EEEEcCccHHHHHHHHHh----CCCc---eeEEEEeCCccchhhhh
Q 003886 674 TVVGGSHGGFLTTHLIGQ----APDK---FVAAAARNPLCNLALMV 712 (789)
Q Consensus 674 ~l~G~S~GG~~a~~~~~~----~p~~---~~a~v~~~pv~~~~~~~ 712 (789)
+++|+|.||..+.+++.. .||+ +.++++.+|..|+..+.
T Consensus 74 ~l~GySqGG~Aa~~AA~l~~~YApeL~~~l~Gaa~gg~~~dl~~~~ 119 (290)
T PF03583_consen 74 ALWGYSQGGQAALWAAELAPSYAPELNRDLVGAAAGGPPADLAALL 119 (290)
T ss_pred EEEeeCccHHHHHHHHHHhHHhCcccccceeEEeccCCccCHHHHH
Confidence 999999999999988754 3554 78999999988876554
No 205
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=98.58 E-value=4.8e-07 Score=89.10 Aligned_cols=200 Identities=15% Similarity=0.185 Sum_probs=138.8
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEec--CCCccccccCCCcccceeecCCCCEEEEEeecC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHV--PQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 229 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~--~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~ 229 (789)
..+....||.|...||..+.++ .+.+| .+|+..+.++- ..++ .+++||.|+..|+..+.+.
T Consensus 264 ~aVlci~FSRDsEMlAsGsqDG-----kIKvWri~tG~ClRrFdrAHtkGv----------t~l~FSrD~SqiLS~sfD~ 328 (508)
T KOG0275|consen 264 DAVLCISFSRDSEMLASGSQDG-----KIKVWRIETGQCLRRFDRAHTKGV----------TCLSFSRDNSQILSASFDQ 328 (508)
T ss_pred cceEEEeecccHHHhhccCcCC-----cEEEEEEecchHHHHhhhhhccCe----------eEEEEccCcchhhcccccc
Confidence 4578899999999999766543 35556 34554444432 3444 7999999999999888776
Q ss_pred CCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEec-cCCCCCCccceEEEeeCCCC
Q 003886 230 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV-KGIPKSLSVGQVVWAPLNEG 308 (789)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l-~~~~~~~~~~~~~wSPDg~~ 308 (789)
..+. -....++..+....+.+|.....|.+|+...++...+..+.||+..+++.... +....+..+.++..-|-...
T Consensus 329 tvRi--HGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpe 406 (508)
T KOG0275|consen 329 TVRI--HGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPE 406 (508)
T ss_pred eEEE--eccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCc
Confidence 4321 11223344455567889999999999987777777889999999988765332 22344567777777776644
Q ss_pred CccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCC---CCccCcceecCCCCE
Q 003886 309 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES---ISSAFFPRFSPDGKF 385 (789)
Q Consensus 309 ~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~---~~~~~~p~~SpDG~~ 385 (789)
-+.+. ||...+|++++ .+..++..+.+ .+..-....||-|.+
T Consensus 407 ----h~iVC--------------Nrsntv~imn~-----------------qGQvVrsfsSGkREgGdFi~~~lSpkGew 451 (508)
T KOG0275|consen 407 ----HFIVC--------------NRSNTVYIMNM-----------------QGQVVRSFSSGKREGGDFINAILSPKGEW 451 (508)
T ss_pred ----eEEEE--------------cCCCeEEEEec-----------------cceEEeeeccCCccCCceEEEEecCCCcE
Confidence 33344 35568999998 66667777765 344566788999999
Q ss_pred EEEEecCCCCCCCCccccceeEEeecCCCCC
Q 003886 386 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (789)
Q Consensus 386 la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~ 416 (789)
++.+..+. -||.+...+|+.
T Consensus 452 iYcigED~-----------vlYCF~~~sG~L 471 (508)
T KOG0275|consen 452 IYCIGEDG-----------VLYCFSVLSGKL 471 (508)
T ss_pred EEEEccCc-----------EEEEEEeecCce
Confidence 98777553 589998877665
No 206
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.57 E-value=2.1e-05 Score=79.45 Aligned_cols=286 Identities=13% Similarity=0.048 Sum_probs=159.4
Q ss_pred ceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEe-cCCCcc
Q 003886 125 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFH-VPQTVH 201 (789)
Q Consensus 125 ~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~-~~~~~~ 201 (789)
.+.+||... .+..+..+|... ..+....||-||.+||..--. ....+| ..+..+..+. .-.+.
T Consensus 86 D~AflW~~~---~ge~~~eltgHK-----DSVt~~~FshdgtlLATGdms-----G~v~v~~~stg~~~~~~~~e~~di- 151 (399)
T KOG0296|consen 86 DLAFLWDIS---TGEFAGELTGHK-----DSVTCCSFSHDGTLLATGDMS-----GKVLVFKVSTGGEQWKLDQEVEDI- 151 (399)
T ss_pred ceEEEEEcc---CCcceeEecCCC-----CceEEEEEccCceEEEecCCC-----ccEEEEEcccCceEEEeecccCce-
Confidence 456777754 344556666665 468889999999999974322 234455 3444444443 22233
Q ss_pred ccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEcc
Q 003886 202 GSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 281 (789)
Q Consensus 202 g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~ 281 (789)
.-+.|.|-+..|++.+.+.. .+.|..+.....+....+..-...+.|.||+.....+..+..|.+||+.
T Consensus 152 ---------eWl~WHp~a~illAG~~DGs--vWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~k 220 (399)
T KOG0296|consen 152 ---------EWLKWHPRAHILLAGSTDGS--VWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPK 220 (399)
T ss_pred ---------EEEEecccccEEEeecCCCc--EEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecC
Confidence 67899998887777766653 3556655544445555555556677899996666666778999999999
Q ss_pred CCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCC
Q 003886 282 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED 361 (789)
Q Consensus 282 ~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 361 (789)
+|.+....+........-..++.+|. +++.++... ..+.++. .+
T Consensus 221 tg~p~~~~~~~e~~~~~~~~~~~~~~-----~~~~g~~e~--------------~~~~~~~-----------------~s 264 (399)
T KOG0296|consen 221 TGQPLHKITQAEGLELPCISLNLAGS-----TLTKGNSEG--------------VACGVNN-----------------GS 264 (399)
T ss_pred CCceeEEecccccCcCCccccccccc-----eeEeccCCc--------------cEEEEcc-----------------cc
Confidence 99765431111122222334444554 455553322 2333332 22
Q ss_pred CCeeecCC---------C---CCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEee
Q 003886 362 LPVVNLTE---------S---ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 429 (789)
Q Consensus 362 ~~~~~Lt~---------~---~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~ 429 (789)
+++..... . ...+.+..||.+=...|..+. ...|.+||+.....|.+-....
T Consensus 265 gKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~v-----------dG~i~iyD~a~~~~R~~c~he~----- 328 (399)
T KOG0296|consen 265 GKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSV-----------DGTIAIYDLAASTLRHICEHED----- 328 (399)
T ss_pred ceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccc-----------cceEEEEecccchhheeccCCC-----
Confidence 22222211 1 112333344433222222222 2368999988766553322222
Q ss_pred eeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC-CceeEEeeecCCEEEEEE
Q 003886 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES-NFSWSLLTLDGDNIIAVS 506 (789)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~-~~~~~~~s~dg~~l~~~~ 506 (789)
++..+.|.+ ..+| +++...| .++.+|..+|++.-...++. .+....++++++.++.++
T Consensus 329 ---------------~V~~l~w~~-t~~l-~t~c~~g--~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s 387 (399)
T KOG0296|consen 329 ---------------GVTKLKWLN-TDYL-LTACANG--KVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVS 387 (399)
T ss_pred ---------------ceEEEEEcC-cchh-eeeccCc--eEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEec
Confidence 233556876 4444 4444444 56666888998876655543 444557777777655444
No 207
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=98.57 E-value=1.7e-06 Score=77.23 Aligned_cols=149 Identities=17% Similarity=0.230 Sum_probs=97.2
Q ss_pred CCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCC--CCCchhhccCCCCCCcccHHHHHHHHHHHHHcCC
Q 003886 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSL--GFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~--G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (789)
...-+||+.||.+.++.+......+..|+.+|+.|.-+++.-.- -.|. ...+...+.. -.+.+.++..+.+.
T Consensus 12 ~~~~tilLaHGAGasmdSt~m~~~a~~la~~G~~vaRfefpYma~Rrtg~---rkPp~~~~t~-~~~~~~~~aql~~~-- 85 (213)
T COG3571 12 PAPVTILLAHGAGASMDSTSMTAVAAALARRGWLVARFEFPYMAARRTGR---RKPPPGSGTL-NPEYIVAIAQLRAG-- 85 (213)
T ss_pred CCCEEEEEecCCCCCCCCHHHHHHHHHHHhCceeEEEeecchhhhccccC---CCCcCccccC-CHHHHHHHHHHHhc--
Confidence 34457888999888888887777888999999999999974210 0110 0111111111 23445555566665
Q ss_pred CCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeC-CccchhhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHH
Q 003886 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN-PLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRF 746 (789)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~-pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (789)
.+..++++-|+||||-++.+.+..-.-.+.++++.. |+.. -+.|. ..
T Consensus 86 l~~gpLi~GGkSmGGR~aSmvade~~A~i~~L~clgYPfhp---------------------------pGKPe-----~~ 133 (213)
T COG3571 86 LAEGPLIIGGKSMGGRVASMVADELQAPIDGLVCLGYPFHP---------------------------PGKPE-----QL 133 (213)
T ss_pred ccCCceeeccccccchHHHHHHHhhcCCcceEEEecCccCC---------------------------CCCcc-----cc
Confidence 466789999999999999988765333366666542 3221 01111 11
Q ss_pred HhcCccccCCCCCCCEEEEEeCCCCCCChHHHHH
Q 003886 747 HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQ 780 (789)
Q Consensus 747 ~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~ 780 (789)
-..++..+++|+||.||+.|+.-..++...
T Consensus 134 ----Rt~HL~gl~tPtli~qGtrD~fGtr~~Va~ 163 (213)
T COG3571 134 ----RTEHLTGLKTPTLITQGTRDEFGTRDEVAG 163 (213)
T ss_pred ----hhhhccCCCCCeEEeecccccccCHHHHHh
Confidence 135788999999999999999887776643
No 208
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.56 E-value=2e-05 Score=83.19 Aligned_cols=261 Identities=13% Similarity=0.077 Sum_probs=133.6
Q ss_pred CCCCCceEEEEEeec-hhhcccceeEEEEEEeecCCCCccceeecCCcc--eecccEEEEeCCCCCeEEEEecCCCCCCe
Q 003886 104 GNGNGTQAMFSISQP-NLLANKRKKFMLSTVISKENENSVTFQWAPFPV--EMTGASAVVPSPSGSKLLVVRNPENESPI 180 (789)
Q Consensus 104 ~spdg~~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~--~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 180 (789)
.||||+.+....+-. -+..++..-.|..+++.+. ....++...+-|- ........++||||++|++.... ....
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~-~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~--p~~~ 129 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH-LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFS--PSPA 129 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccC-cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCC--CCCE
Confidence 579999885443311 1233444556777775332 1122222111000 01123478899999998654322 2334
Q ss_pred EEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC----CCccCCCCCCCCCCcCCCCCCC
Q 003886 181 QFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK----PTFSLGSTKGGSSDKDCNSWKG 255 (789)
Q Consensus 181 ~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 255 (789)
+-.++ ..++....+.++...+ +|.-+.-.....+.||+.+.+..+...... +.+.. .......++
T Consensus 130 V~VvD~~~~kvv~ei~vp~~~~--vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~----~~~~v~~rP---- 199 (352)
T TIGR02658 130 VGVVDLEGKAFVRMMDVPDCYH--IFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHP----EDEYLINHP---- 199 (352)
T ss_pred EEEEECCCCcEEEEEeCCCCcE--EEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecC----CccccccCC----
Confidence 66677 5667777777755443 222222223456789987765554432210 00000 000000111
Q ss_pred cceeeC-CcccccCCccCceEEEEEccCCceEeccCC--------CCCCcc---ceEEEeeCCCCCccEEEEEeecCCce
Q 003886 256 QGDWEE-DWGETYAGKRQPSLFVININSGEVQAVKGI--------PKSLSV---GQVVWAPLNEGLHQYLVFVGWSSETR 323 (789)
Q Consensus 256 ~~~~~~-d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~--------~~~~~~---~~~~wSPDg~~~~~~l~f~~~~~~~~ 323 (789)
.|.+ |....|.... ..|+++|+.+.++...... ...... ..++++|||++ ++.......
T Consensus 200 --~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~----lyV~~~~~~-- 270 (352)
T TIGR02658 200 --AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDR----IYLLADQRA-- 270 (352)
T ss_pred --ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCE----EEEEecCCc--
Confidence 2233 4333333333 8899999766544333100 011222 23899999997 544342111
Q ss_pred eeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCee-ecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccc
Q 003886 324 KLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 402 (789)
Q Consensus 324 ~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~ 402 (789)
+... .....+|+.+|. .+.+.. ++.- .......++||||+.++|..+..
T Consensus 271 ~~th---k~~~~~V~ViD~-----------------~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~--------- 320 (352)
T TIGR02658 271 KWTH---KTASRFLFVVDA-----------------KTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTG--------- 320 (352)
T ss_pred cccc---cCCCCEEEEEEC-----------------CCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCC---------
Confidence 0000 012247999998 555543 3332 33577899999999666777643
Q ss_pred cceeEEeecCCCCC
Q 003886 403 TDSLHRIDWPTNGN 416 (789)
Q Consensus 403 ~~~L~~~d~~~~~~ 416 (789)
.+.|.++|..+++.
T Consensus 321 s~~VsViD~~t~k~ 334 (352)
T TIGR02658 321 DKTLYIFDAETGKE 334 (352)
T ss_pred CCcEEEEECcCCeE
Confidence 24599999887654
No 209
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=98.55 E-value=1.8e-07 Score=93.41 Aligned_cols=181 Identities=14% Similarity=0.184 Sum_probs=114.3
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHH-HHHHHHHCCcEEEEEcCCCCCCCCchhhccCCC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 645 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~-~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~ 645 (789)
..++.||.++..+++.-.....+...-+||..-|..+ .|.- .+.-=++.||.|+-.|.+| |+.+..-
T Consensus 218 kiks~dgneiDtmF~d~r~n~~~ngq~LvIC~EGNAG-----FYEvG~m~tP~~lgYsvLGwNhPG---FagSTG~---- 285 (517)
T KOG1553|consen 218 KIKSSDGNEIDTMFLDGRPNQSGNGQDLVICFEGNAG-----FYEVGVMNTPAQLGYSVLGWNHPG---FAGSTGL---- 285 (517)
T ss_pred EEeecCCcchhheeecCCCCCCCCCceEEEEecCCcc-----ceEeeeecChHHhCceeeccCCCC---ccccCCC----
Confidence 4466788889988886442233444567777777333 1111 1223457899999999976 4433211
Q ss_pred CCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhh
Q 003886 646 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 725 (789)
Q Consensus 646 ~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~ 725 (789)
-+...+.+.+.+++++++..-....+.|.++|||.||+.++|+|..+|| ++++|+.+.+-|+..+.-..-...|. .
T Consensus 286 P~p~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPd-VkavvLDAtFDDllpLAl~rMP~~~~---g 361 (517)
T KOG1553|consen 286 PYPVNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPD-VKAVVLDATFDDLLPLALFRMPTFFS---G 361 (517)
T ss_pred CCcccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCC-ceEEEeecchhhhhhHHhhhchHHHH---H
Confidence 1223456677788999998755778899999999999999999999997 89999999888764432111111111 0
Q ss_pred ccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCCh
Q 003886 726 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPV 775 (789)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~ 775 (789)
+- ......+...+....+.+.+.|+++|--++|+++..
T Consensus 362 iV------------~~aiRnh~NLnnaell~ry~GPi~lIRRt~dEIitt 399 (517)
T KOG1553|consen 362 IV------------EHAIRNHMNLNNAELLARYKGPIRLIRRTQDEIITT 399 (517)
T ss_pred HH------------HHHHHHhcccchHHHHHhhcCchhHhhhhhHhhhhc
Confidence 00 011222222233334556778888888888877643
No 210
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=98.54 E-value=1.2e-06 Score=90.19 Aligned_cols=113 Identities=19% Similarity=0.259 Sum_probs=74.2
Q ss_pred CCCcEEEEEcCCCCCCCchh--------hHHHH----HHHHHCCcEEEEEcCCCCC-CC-CchhhccCC----CCCCccc
Q 003886 590 SCDPLIVVLHGGPHSVSLSS--------YSKSL----AFLSSVGYSLLIVNYRGSL-GF-GEEALQSLP----GKVGSQD 651 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~--------~~~~~----~~la~~Gy~V~~~d~rGs~-G~-G~~~~~~~~----~~~~~~~ 651 (789)
.+..+|+++|+-.++..... |...+ +.+.-.-|.||++|.-|++ |. |....+... ..+....
T Consensus 49 ~~~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~r~fvIc~NvlG~c~GStgP~s~~p~g~~yg~~FP~~t 128 (368)
T COG2021 49 EKDNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFFVICTNVLGGCKGSTGPSSINPGGKPYGSDFPVIT 128 (368)
T ss_pred cCCceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCccceEEEEecCCCCCCCCCCCCCcCCCCCccccCCCccc
Confidence 56789999999544322222 32111 1344445999999998854 22 222222110 1223356
Q ss_pred HHHHHHHHHHHHHcCCCCCccEE-EEEcCccHHHHHHHHHhCCCceeEEEEeCC
Q 003886 652 VNDVLTAIDHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAARNP 704 (789)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~-l~G~S~GG~~a~~~~~~~p~~~~a~v~~~p 704 (789)
+.|.+++-+.|+++ +..+++. |+|.||||+.++..+..+||+++.+|..+.
T Consensus 129 i~D~V~aq~~ll~~--LGI~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~ 180 (368)
T COG2021 129 IRDMVRAQRLLLDA--LGIKKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIAT 180 (368)
T ss_pred HHHHHHHHHHHHHh--cCcceEeeeeccChHHHHHHHHHHhChHHHhhhheecc
Confidence 88999888888886 3345665 999999999999999999999988777765
No 211
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=4.3e-06 Score=90.51 Aligned_cols=242 Identities=15% Similarity=0.168 Sum_probs=139.6
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
..+....|+|+|++||.....+ .+.||+..+..++........+.| ..++|+ +..+...+.+...-.
T Consensus 218 ~~vtSv~ws~~G~~LavG~~~g-----~v~iwD~~~~k~~~~~~~~h~~rv------g~laW~--~~~lssGsr~~~I~~ 284 (484)
T KOG0305|consen 218 ELVTSVKWSPDGSHLAVGTSDG-----TVQIWDVKEQKKTRTLRGSHASRV------GSLAWN--SSVLSSGSRDGKILN 284 (484)
T ss_pred CceEEEEECCCCCEEEEeecCC-----eEEEEehhhccccccccCCcCcee------EEEecc--CceEEEecCCCcEEE
Confidence 4688999999999999976654 677776444444333322222223 788888 222332222211100
Q ss_pred CCccCCCCCCC-CCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCc-eEeccCCCCCCccceEEEeeCCCCCcc
Q 003886 234 PTFSLGSTKGG-SSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (789)
Q Consensus 234 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~-~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (789)
++....... .....+..-+-...|.+|......+..++.+++||....+ ...+ +.....+-.++|+|=-+.
T Consensus 285 --~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~--~~H~aAVKA~awcP~q~~--- 357 (484)
T KOG0305|consen 285 --HDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTF--TEHTAAVKALAWCPWQSG--- 357 (484)
T ss_pred --EEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEE--eccceeeeEeeeCCCccC---
Confidence 000000000 0011122212223577786666677778999999984433 3344 445567788999998777
Q ss_pred EEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEec
Q 003886 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 391 (789)
Q Consensus 312 ~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~ 391 (789)
|+-++-.. .+..|..+|. .++...........+.+..||+..+.|+....
T Consensus 358 -lLAsGGGs------------~D~~i~fwn~-----------------~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG 407 (484)
T KOG0305|consen 358 -LLATGGGS------------ADRCIKFWNT-----------------NTGARIDSVDTGSQVCSLIWSKKYKELLSTHG 407 (484)
T ss_pred -ceEEcCCC------------cccEEEEEEc-----------------CCCcEecccccCCceeeEEEcCCCCEEEEecC
Confidence 66665221 1235777776 55655554445567899999999999987663
Q ss_pred CCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003886 392 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (789)
Q Consensus 392 ~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (789)
. ..++|-+|++++-.....-.+. ...+..+.|+|||.+|+ ++..+.+.++|
T Consensus 408 ~---------s~n~i~lw~~ps~~~~~~l~gH-------------------~~RVl~la~SPdg~~i~-t~a~DETlrfw 458 (484)
T KOG0305|consen 408 Y---------SENQITLWKYPSMKLVAELLGH-------------------TSRVLYLALSPDGETIV-TGAADETLRFW 458 (484)
T ss_pred C---------CCCcEEEEeccccceeeeecCC-------------------cceeEEEEECCCCCEEE-EecccCcEEec
Confidence 3 2357888888773322111111 12355778999999774 55555566666
Q ss_pred EEE
Q 003886 472 SVN 474 (789)
Q Consensus 472 ~~d 474 (789)
.+-
T Consensus 459 ~~f 461 (484)
T KOG0305|consen 459 NLF 461 (484)
T ss_pred ccc
Confidence 554
No 212
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=98.51 E-value=1.8e-06 Score=89.91 Aligned_cols=211 Identities=14% Similarity=0.150 Sum_probs=122.2
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
..+....||++|..++..+.+. .+.+|+ +|+....+++..-. ..+.+.||+..++++...
T Consensus 259 k~Vrd~~~s~~g~~fLS~sfD~-----~lKlwDtETG~~~~~f~~~~~~----------~cvkf~pd~~n~fl~G~s--- 320 (503)
T KOG0282|consen 259 KPVRDASFNNCGTSFLSASFDR-----FLKLWDTETGQVLSRFHLDKVP----------TCVKFHPDNQNIFLVGGS--- 320 (503)
T ss_pred hhhhhhhccccCCeeeeeecce-----eeeeeccccceEEEEEecCCCc----------eeeecCCCCCcEEEEecC---
Confidence 3477889999999998887654 678884 55555555543333 689999999888776432
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCC-ccceEEEeeCCCCCc
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL-SVGQVVWAPLNEGLH 310 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~-~~~~~~wSPDg~~~~ 310 (789)
+..|..||+.+|++.+- ...++ .+....|-|+|++
T Consensus 321 ----------------------------------------d~ki~~wDiRs~kvvqe--Yd~hLg~i~~i~F~~~g~r-- 356 (503)
T KOG0282|consen 321 ----------------------------------------DKKIRQWDIRSGKVVQE--YDRHLGAILDITFVDEGRR-- 356 (503)
T ss_pred ----------------------------------------CCcEEEEeccchHHHHH--HHhhhhheeeeEEccCCce--
Confidence 35677788888776543 23333 4556677777777
Q ss_pred cEEEEEeecCCcee----------------------------eeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCC
Q 003886 311 QYLVFVGWSSETRK----------------------------LGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL 362 (789)
Q Consensus 311 ~~l~f~~~~~~~~~----------------------------~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 362 (789)
.+.++....-+- .++..|.+-...|++..+.- .-.-.
T Consensus 357 --FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~-------------~~r~n 421 (503)
T KOG0282|consen 357 --FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVP-------------PFRLN 421 (503)
T ss_pred --EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccc-------------ccccC
Confidence 554443222110 11111222222333333200 00001
Q ss_pred CeeecCCC--CCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCcc
Q 003886 363 PVVNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPG 440 (789)
Q Consensus 363 ~~~~Lt~~--~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g 440 (789)
..++...+ .|......|||||.+|+.-..+ ..++.|||.+-...........
T Consensus 422 kkK~feGh~vaGys~~v~fSpDG~~l~SGdsd-----------G~v~~wdwkt~kl~~~lkah~~--------------- 475 (503)
T KOG0282|consen 422 KKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSD-----------GKVNFWDWKTTKLVSKLKAHDQ--------------- 475 (503)
T ss_pred HhhhhcceeccCceeeEEEcCCCCeEEeecCC-----------ccEEEeechhhhhhhccccCCc---------------
Confidence 11122222 4567789999999998765544 3699999988544322111111
Q ss_pred ccccCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003886 441 LYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (789)
Q Consensus 441 ~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (789)
-.....|.|-....+.+..++|...+|
T Consensus 476 ----~ci~v~wHP~e~Skvat~~w~G~Ikiw 502 (503)
T KOG0282|consen 476 ----PCIGVDWHPVEPSKVATCGWDGLIKIW 502 (503)
T ss_pred ----ceEEEEecCCCcceeEecccCceeEec
Confidence 122456888777777777788877665
No 213
>PLN00181 protein SPA1-RELATED; Provisional
Probab=98.50 E-value=2.2e-05 Score=94.58 Aligned_cols=241 Identities=14% Similarity=0.094 Sum_probs=132.7
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCc------e--eEEEecCCCccccccCCCcccceeecCC-CCEEEE
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ------L--EKEFHVPQTVHGSVYADGWFEGISWNSD-ETLIAY 224 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~------~--~~~~~~~~~~~g~v~~d~~~~~~~wSpD-g~~la~ 224 (789)
+.+...+|+|||++||.....+ .+.+|+... . ....... .+. .+..+.|+|. ++.||.
T Consensus 484 ~~V~~i~fs~dg~~latgg~D~-----~I~iwd~~~~~~~~~~~~~~~~~~~--~~~------~v~~l~~~~~~~~~las 550 (793)
T PLN00181 484 NLVCAIGFDRDGEFFATAGVNK-----KIKIFECESIIKDGRDIHYPVVELA--SRS------KLSGICWNSYIKSQVAS 550 (793)
T ss_pred CcEEEEEECCCCCEEEEEeCCC-----EEEEEECCcccccccccccceEEec--ccC------ceeeEEeccCCCCEEEE
Confidence 3477889999999998876543 456663211 0 0011111 111 2368899875 677776
Q ss_pred EeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeC-CcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEe
Q 003886 225 VAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE-DWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWA 303 (789)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wS 303 (789)
...+.... .|+............+...+....|.+ +....+++..+..|.+||+.++..... ......+..+.|+
T Consensus 551 ~~~Dg~v~--lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~--~~~~~~v~~v~~~ 626 (793)
T PLN00181 551 SNFEGVVQ--VWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT--IKTKANICCVQFP 626 (793)
T ss_pred EeCCCeEE--EEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE--EecCCCeEEEEEe
Confidence 66554332 344333322233334444444556765 333344566678999999988765433 2223355677885
Q ss_pred -eCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCC-CeeecCCCCCccCcceecC
Q 003886 304 -PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSP 381 (789)
Q Consensus 304 -PDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~Lt~~~~~~~~p~~Sp 381 (789)
++|+. |+..+ .+..|+++|+. ... ....+..+...+....|+
T Consensus 627 ~~~g~~----latgs---------------~dg~I~iwD~~----------------~~~~~~~~~~~h~~~V~~v~f~- 670 (793)
T PLN00181 627 SESGRS----LAFGS---------------ADHKVYYYDLR----------------NPKLPLCTMIGHSKTVSYVRFV- 670 (793)
T ss_pred CCCCCE----EEEEe---------------CCCeEEEEECC----------------CCCccceEecCCCCCEEEEEEe-
Confidence 46776 66554 22368888872 112 234555566667788887
Q ss_pred CCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEE
Q 003886 382 DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 461 (789)
Q Consensus 382 DG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~ 461 (789)
||..|+..+.+. .|.+||+..+.... .. ..+..+ .| +...+..+.|+++++.| ++
T Consensus 671 ~~~~lvs~s~D~-----------~ikiWd~~~~~~~~-~~--~~l~~~---------~g-h~~~i~~v~~s~~~~~l-as 725 (793)
T PLN00181 671 DSSTLVSSSTDN-----------TLKLWDLSMSISGI-NE--TPLHSF---------MG-HTNVKNFVGLSVSDGYI-AT 725 (793)
T ss_pred CCCEEEEEECCC-----------EEEEEeCCCCcccc-CC--cceEEE---------cC-CCCCeeEEEEcCCCCEE-EE
Confidence 788877666442 58889886432100 00 001000 00 00123356789998744 55
Q ss_pred EEeCCeEEEEE
Q 003886 462 SIWGSSQVIIS 472 (789)
Q Consensus 462 ~~~~~~~~l~~ 472 (789)
+..++...+|.
T Consensus 726 gs~D~~v~iw~ 736 (793)
T PLN00181 726 GSETNEVFVYH 736 (793)
T ss_pred EeCCCEEEEEE
Confidence 56666655654
No 214
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=6.3e-05 Score=79.96 Aligned_cols=261 Identities=13% Similarity=0.195 Sum_probs=148.7
Q ss_pred ccEEEEeCCCCCeEEEEecCC------CCCCeEEEEe--cCCceeEEEecC--CCccccccCCCcccceeecCCCCEEEE
Q 003886 155 GASAVVPSPSGSKLLVVRNPE------NESPIQFELW--SQSQLEKEFHVP--QTVHGSVYADGWFEGISWNSDETLIAY 224 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~------~~~~~~~~i~--~~~~~~~~~~~~--~~~~g~v~~d~~~~~~~wSpDg~~la~ 224 (789)
++....|||.-++|+.-+... +...+-+.|| .+|...+-+.+. ...+ +.-+.||-|+|.+|-
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~--------WP~frWS~DdKy~Ar 322 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLK--------WPIFRWSHDDKYFAR 322 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccc--------cceEEeccCCceeEE
Confidence 688899999999998765332 1233555677 577777666652 2221 246899999998886
Q ss_pred EeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEee
Q 003886 225 VAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP 304 (789)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSP 304 (789)
...+.-. .| ..+...++|..+ ..+ ..+.++.|||
T Consensus 323 m~~~sis--------------------------Iy-----------Etpsf~lld~Ks---lki------~gIr~FswsP 356 (698)
T KOG2314|consen 323 MTGNSIS--------------------------IY-----------ETPSFMLLDKKS---LKI------SGIRDFSWSP 356 (698)
T ss_pred eccceEE--------------------------EE-----------ecCceeeecccc---cCC------ccccCcccCC
Confidence 5331100 00 012233333221 111 2467899999
Q ss_pred CCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCC
Q 003886 305 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGK 384 (789)
Q Consensus 305 Dg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~ 384 (789)
-+.- |+|-.-+.. +-++.+-++.++ ...+++...-..-.....-|-..|+
T Consensus 357 ~~~l----lAYwtpe~~----------~~parvtL~evP----------------s~~~iRt~nlfnVsDckLhWQk~gd 406 (698)
T KOG2314|consen 357 TSNL----LAYWTPETN----------NIPARVTLMEVP----------------SKREIRTKNLFNVSDCKLHWQKSGD 406 (698)
T ss_pred Ccce----EEEEccccc----------CCcceEEEEecC----------------ccceeeeccceeeeccEEEeccCCc
Confidence 9988 998763322 344556666663 2223332222233456778999999
Q ss_pred EEEEEecCCCCCC-CCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEE
Q 003886 385 FLVFLSAKSSVDS-GAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 463 (789)
Q Consensus 385 ~la~~s~~~~~~~-g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~ 463 (789)
+|++-.++.+... +.-....+|++++ . +.+.- +++.+- ..+..++|-|.|.+..+.+.
T Consensus 407 yLcvkvdR~tK~~~~g~f~n~eIfrir--e---KdIpv---e~velk-------------e~vi~FaWEP~gdkF~vi~g 465 (698)
T KOG2314|consen 407 YLCVKVDRHTKSKVKGQFSNLEIFRIR--E---KDIPV---EVVELK-------------ESVIAFAWEPHGDKFAVISG 465 (698)
T ss_pred EEEEEEEeeccccccceEeeEEEEEee--c---cCCCc---eeeecc-------------hheeeeeeccCCCeEEEEEc
Confidence 9999887764321 1111223455553 2 11211 111110 13457889999998877765
Q ss_pred eC--CeEEEEEEECCCCcEEEecCCC-CCceeEEeeecCCEEEEEEeCCCCCCeEEEEeec
Q 003886 464 WG--SSQVIISVNVSSGELLRITPAE-SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521 (789)
Q Consensus 464 ~~--~~~~l~~~dl~tg~~~~lt~~~-~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~ 521 (789)
.. .....|.+....++...+..-+ .......|+|.|+.++...-.. .-..++.+|..
T Consensus 466 ~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s-~~g~l~F~D~~ 525 (698)
T KOG2314|consen 466 NTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVS-RRGDLEFYDTD 525 (698)
T ss_pred cccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecc-cccceEEEecc
Confidence 44 4567788876555554443222 1335568999999876655332 44557777754
No 215
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=98.49 E-value=1.3e-06 Score=96.39 Aligned_cols=193 Identities=16% Similarity=0.081 Sum_probs=117.3
Q ss_pred cceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccC
Q 003886 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (789)
Q Consensus 211 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (789)
.+.+||||.+.|+-.+++.+.+- |...........+.+...+....|.|.+=.-.+...+..-.+|..+...+.++
T Consensus 455 yg~sFsPd~rfLlScSED~svRL--Wsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRi-- 530 (707)
T KOG0263|consen 455 YGCSFSPDRRFLLSCSEDSSVRL--WSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRI-- 530 (707)
T ss_pred eeeeecccccceeeccCCcceee--eecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhh--
Confidence 68999999999999999887663 33222222222222222222233444421111222344445666666666666
Q ss_pred CCCCC-ccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCC
Q 003886 291 IPKSL-SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE 369 (789)
Q Consensus 291 ~~~~~-~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~ 369 (789)
..++. .+.-+.|.|++.+ ++-.+ . +..+..+|+. .+..+|..++
T Consensus 531 faghlsDV~cv~FHPNs~Y----~aTGS--s-------------D~tVRlWDv~----------------~G~~VRiF~G 575 (707)
T KOG0263|consen 531 FAGHLSDVDCVSFHPNSNY----VATGS--S-------------DRTVRLWDVS----------------TGNSVRIFTG 575 (707)
T ss_pred hcccccccceEEECCcccc----cccCC--C-------------CceEEEEEcC----------------CCcEEEEecC
Confidence 45554 4566899999886 44332 1 1245556652 4556777788
Q ss_pred CCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCC
Q 003886 370 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 449 (789)
Q Consensus 370 ~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~ 449 (789)
+.+.+...+|||+|++|+..+.+. .|.+||+.++.......+.. ..+.++
T Consensus 576 H~~~V~al~~Sp~Gr~LaSg~ed~-----------~I~iWDl~~~~~v~~l~~Ht-------------------~ti~Sl 625 (707)
T KOG0263|consen 576 HKGPVTALAFSPCGRYLASGDEDG-----------LIKIWDLANGSLVKQLKGHT-------------------GTIYSL 625 (707)
T ss_pred CCCceEEEEEcCCCceEeecccCC-----------cEEEEEcCCCcchhhhhccc-------------------CceeEE
Confidence 889999999999999998766443 59999998866532222211 234577
Q ss_pred ccccCCCEEEEEEEeCCeEEEEEE
Q 003886 450 PWLSDGCTMLLSSIWGSSQVIISV 473 (789)
Q Consensus 450 ~ws~Dg~~l~~~~~~~~~~~l~~~ 473 (789)
.||.||. +++++..+....+|-+
T Consensus 626 sFS~dg~-vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 626 SFSRDGN-VLASGGADNSVRLWDL 648 (707)
T ss_pred EEecCCC-EEEecCCCCeEEEEEc
Confidence 8999998 4455555556667733
No 216
>PRK10115 protease 2; Provisional
Probab=98.48 E-value=3.3e-05 Score=90.40 Aligned_cols=207 Identities=14% Similarity=0.109 Sum_probs=120.2
Q ss_pred cceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCc--eEec
Q 003886 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE--VQAV 288 (789)
Q Consensus 211 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~--~~~l 288 (789)
..+.|||||++|||..... +....+|+++|+.+|+ ...+
T Consensus 130 ~~~~~Spdg~~la~~~d~~---------------------------------------G~E~~~l~v~d~~tg~~l~~~i 170 (686)
T PRK10115 130 GGMAITPDNTIMALAEDFL---------------------------------------SRRQYGIRFRNLETGNWYPELL 170 (686)
T ss_pred eEEEECCCCCEEEEEecCC---------------------------------------CcEEEEEEEEECCCCCCCCccc
Confidence 6789999999999985432 1145789999999987 3333
Q ss_pred cCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCC--Ceee
Q 003886 289 KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL--PVVN 366 (789)
Q Consensus 289 ~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~ 366 (789)
. ... ..++|++||+. |+|+..... ..++.+||+.++ .++ +.+.
T Consensus 171 ~----~~~-~~~~w~~D~~~----~~y~~~~~~---------~~~~~~v~~h~l-----------------gt~~~~d~l 215 (686)
T PRK10115 171 D----NVE-PSFVWANDSWT----FYYVRKHPV---------TLLPYQVWRHTI-----------------GTPASQDEL 215 (686)
T ss_pred c----Ccc-eEEEEeeCCCE----EEEEEecCC---------CCCCCEEEEEEC-----------------CCChhHCeE
Confidence 1 112 46999999999 999886321 014568999998 444 3344
Q ss_pred cCCC-CCccC-cceecCCCCEEEEEecCCCCCCCCccccceeEEeecC--CCCCCCcccceeeEEeeeeccCCCCCcccc
Q 003886 367 LTES-ISSAF-FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP--TNGNFSSLEKIVDVIPVVQCAEGDCFPGLY 442 (789)
Q Consensus 367 Lt~~-~~~~~-~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~--~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~ 442 (789)
|... ..... ....+.||++++..+... ....+++++.+ .+..+.+ ...+.+.. |
T Consensus 216 v~~e~~~~~~~~~~~s~d~~~l~i~~~~~--------~~~~~~l~~~~~~~~~~~~~----------~~~~~~~~----~ 273 (686)
T PRK10115 216 VYEEKDDTFYVSLHKTTSKHYVVIHLASA--------TTSEVLLLDAELADAEPFVF----------LPRRKDHE----Y 273 (686)
T ss_pred EEeeCCCCEEEEEEEcCCCCEEEEEEECC--------ccccEEEEECcCCCCCceEE----------EECCCCCE----E
Confidence 4332 22122 223355999987555443 23467777742 2221111 11111100 0
Q ss_pred ccCCCCCccccCCCEEEEEEEeC-CeEEEEEEECC-CCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEee
Q 003886 443 SSSILSNPWLSDGCTMLLSSIWG-SSQVIISVNVS-SGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 520 (789)
Q Consensus 443 ~~~~~~~~ws~Dg~~l~~~~~~~-~~~~l~~~dl~-tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~ 520 (789)
.....+..+|+.++.+ ....|+.+++. .++.+.+.+.........+...++.|++.......+ .+++++.
T Consensus 274 -------~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~-~l~~~~~ 345 (686)
T PRK10115 274 -------SLDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGLT-SLRQINR 345 (686)
T ss_pred -------EEEeCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCCEE-EEEEEcC
Confidence 1112345788877654 45678988887 466666766633223334555577777776655443 3666665
Q ss_pred c
Q 003886 521 V 521 (789)
Q Consensus 521 ~ 521 (789)
.
T Consensus 346 ~ 346 (686)
T PRK10115 346 K 346 (686)
T ss_pred C
Confidence 3
No 217
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=8.2e-06 Score=88.38 Aligned_cols=269 Identities=15% Similarity=0.161 Sum_probs=159.8
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecC-CCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~-~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
.....|| ....||...... + .+| ..+....+.++. ..+ ..+.|+++|+.||.........
T Consensus 180 ~nlldWs-s~n~laValg~~-----v-ylW~~~s~~v~~l~~~~~~~v----------tSv~ws~~G~~LavG~~~g~v~ 242 (484)
T KOG0305|consen 180 LNLLDWS-SANVLAVALGQS-----V-YLWSASSGSVTELCSFGEELV----------TSVKWSPDGSHLAVGTSDGTVQ 242 (484)
T ss_pred hhHhhcc-cCCeEEEEecce-----E-EEEecCCCceEEeEecCCCce----------EEEEECCCCCEEEEeecCCeEE
Confidence 3446699 555676653332 4 456 466666776652 233 7999999999999987765432
Q ss_pred CCCccCCCCCCCCCCcC-CCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCcc
Q 003886 233 KPTFSLGSTKGGSSDKD-CNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (789)
.|+....+....... +....+...|... ....+.+...|...|+...+...-+-......+-...|++|++.
T Consensus 243 --iwD~~~~k~~~~~~~~h~~rvg~laW~~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~--- 315 (484)
T KOG0305|consen 243 --IWDVKEQKKTRTLRGSHASRVGSLAWNSS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQ--- 315 (484)
T ss_pred --EEehhhccccccccCCcCceeEEEeccCc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCe---
Confidence 344322222222222 4444444455422 33445567788888876654211100122335668899999999
Q ss_pred EEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEec
Q 003886 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 391 (789)
Q Consensus 312 ~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~ 391 (789)
++-.++ +..++++|.. .......++++...+-..+|+|=-+-|+-+..
T Consensus 316 -lASGgn---------------DN~~~Iwd~~----------------~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGG 363 (484)
T KOG0305|consen 316 -LASGGN---------------DNVVFIWDGL----------------SPEPKFTFTEHTAAVKALAWCPWQSGLLATGG 363 (484)
T ss_pred -eccCCC---------------ccceEeccCC----------------CccccEEEeccceeeeEeeeCCCccCceEEcC
Confidence 887764 2357777752 44566788888888999999996555543332
Q ss_pred CCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeC-CeEEE
Q 003886 392 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG-SSQVI 470 (789)
Q Consensus 392 ~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~-~~~~l 470 (789)
. .....|+.||..++....... .+..+-.+.|++..+.|+.+.... ....|
T Consensus 364 G--------s~D~~i~fwn~~~g~~i~~vd--------------------tgsQVcsL~Wsk~~kEi~sthG~s~n~i~l 415 (484)
T KOG0305|consen 364 G--------SADRCIKFWNTNTGARIDSVD--------------------TGSQVCSLIWSKKYKELLSTHGYSENQITL 415 (484)
T ss_pred C--------CcccEEEEEEcCCCcEecccc--------------------cCCceeeEEEcCCCCEEEEecCCCCCcEEE
Confidence 2 234679999988765432111 112456788999999887654332 44567
Q ss_pred EEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCC
Q 003886 471 ISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSP 509 (789)
Q Consensus 471 ~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~ 509 (789)
|.+.. -..+..++.....+....++|||..++....+-
T Consensus 416 w~~ps-~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DE 453 (484)
T KOG0305|consen 416 WKYPS-MKLVAELLGHTSRVLYLALSPDGETIVTGAADE 453 (484)
T ss_pred Eeccc-cceeeeecCCcceeEEEEECCCCCEEEEecccC
Confidence 77653 122333333333445567888888776555443
No 218
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=98.46 E-value=7.9e-06 Score=78.87 Aligned_cols=186 Identities=17% Similarity=0.172 Sum_probs=118.7
Q ss_pred cceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceE-ecc
Q 003886 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ-AVK 289 (789)
Q Consensus 211 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~-~l~ 289 (789)
..+.|+-||++||..+.++ .+.+|+++.+..+ .+.
T Consensus 24 ~Sv~wn~~g~~lasgs~dk--------------------------------------------tv~v~n~e~~r~~~~~~ 59 (313)
T KOG1407|consen 24 HSVAWNCDGTKLASGSFDK--------------------------------------------TVSVWNLERDRFRKELV 59 (313)
T ss_pred eEEEEcccCceeeecccCC--------------------------------------------ceEEEEecchhhhhhhc
Confidence 6899999999999876553 3445565555221 111
Q ss_pred CCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCC
Q 003886 290 GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE 369 (789)
Q Consensus 290 ~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~ 369 (789)
.-....++.++.|+|-..- +++++.. ...|.++|+ ..+++..-+.
T Consensus 60 ~~gh~~svdql~w~~~~~d----~~atas~--------------dk~ir~wd~-----------------r~~k~~~~i~ 104 (313)
T KOG1407|consen 60 YRGHTDSVDQLCWDPKHPD----LFATASG--------------DKTIRIWDI-----------------RSGKCTARIE 104 (313)
T ss_pred ccCCCcchhhheeCCCCCc----ceEEecC--------------CceEEEEEe-----------------ccCcEEEEee
Confidence 1122336789999998877 7776622 226788887 5566666566
Q ss_pred CCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCC
Q 003886 370 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 449 (789)
Q Consensus 370 ~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~ 449 (789)
..+......|||||+++++...++ .|-.+|..+-...... .|+ ......
T Consensus 105 ~~~eni~i~wsp~g~~~~~~~kdD-----------~it~id~r~~~~~~~~----------------~~~----~e~ne~ 153 (313)
T KOG1407|consen 105 TKGENINITWSPDGEYIAVGNKDD-----------RITFIDARTYKIVNEE----------------QFK----FEVNEI 153 (313)
T ss_pred ccCcceEEEEcCCCCEEEEecCcc-----------cEEEEEecccceeehh----------------ccc----ceeeee
Confidence 667778899999999999877664 4666776543321110 010 012345
Q ss_pred ccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeC
Q 003886 450 PWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSS 508 (789)
Q Consensus 450 ~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss 508 (789)
.|.-++. ++|..+..|..+|..+. .-..++-|........-..|+|+|++++.-.++
T Consensus 154 ~w~~~nd-~Fflt~GlG~v~ILsyp-sLkpv~si~AH~snCicI~f~p~GryfA~GsAD 210 (313)
T KOG1407|consen 154 SWNNSND-LFFLTNGLGCVEILSYP-SLKPVQSIKAHPSNCICIEFDPDGRYFATGSAD 210 (313)
T ss_pred eecCCCC-EEEEecCCceEEEEecc-ccccccccccCCcceEEEEECCCCceEeecccc
Confidence 6875554 88888887888888876 223334444444444557899999998766554
No 219
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.44 E-value=5.3e-05 Score=77.61 Aligned_cols=235 Identities=17% Similarity=0.216 Sum_probs=132.2
Q ss_pred EEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeec-CCCCEEEEEeecCCCCCCCc
Q 003886 158 AVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWN-SDETLIAYVAEEPSPSKPTF 236 (789)
Q Consensus 158 ~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wS-pDg~~la~~~~~~~~~~~~~ 236 (789)
.|+|.|....|+|+.... .+++.+...+........+. . .++... +||+ |+....
T Consensus 4 gp~~d~~~g~l~~~D~~~---~~i~~~~~~~~~~~~~~~~~-~----------~G~~~~~~~g~-l~v~~~--------- 59 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPG---GRIYRVDPDTGEVEVIDLPG-P----------NGMAFDRPDGR-LYVADS--------- 59 (246)
T ss_dssp EEEEETTTTEEEEEETTT---TEEEEEETTTTEEEEEESSS-E----------EEEEEECTTSE-EEEEET---------
T ss_pred ceEEECCCCEEEEEEcCC---CEEEEEECCCCeEEEEecCC-C----------ceEEEEccCCE-EEEEEc---------
Confidence 689999888888875432 36888885555555555544 3 466677 6654 444321
Q ss_pred cCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCC----CCCccceEEEeeCCCCCccE
Q 003886 237 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP----KSLSVGQVVWAPLNEGLHQY 312 (789)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~----~~~~~~~~~wSPDg~~~~~~ 312 (789)
..+.++|+.+++++.+.... .......+++.|||+
T Consensus 60 ------------------------------------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~----- 98 (246)
T PF08450_consen 60 ------------------------------------GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN----- 98 (246)
T ss_dssp ------------------------------------TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS------
T ss_pred ------------------------------------CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-----
Confidence 23455688888877663111 233567899999998
Q ss_pred EEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecC
Q 003886 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (789)
Q Consensus 313 l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~ 392 (789)
|+|+......... .....||+++. + ++.+.+..........+|||||+.|++....
T Consensus 99 ly~t~~~~~~~~~------~~~g~v~~~~~-----------------~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 99 LYVTDSGGGGASG------IDPGSVYRIDP-----------------D-GKVTVVADGLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp EEEEEECCBCTTC------GGSEEEEEEET-----------------T-SEEEEEEEEESSEEEEEEETTSSEEEEEETT
T ss_pred EEEEecCCCcccc------ccccceEEECC-----------------C-CeEEEEecCcccccceEECCcchheeecccc
Confidence 6766532221000 00146999996 4 5566665555556789999999988776543
Q ss_pred CCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003886 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (789)
Q Consensus 393 ~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (789)
..+|+++++...... +. ....+.. .+....+ ...+++..+|+ ||+... +...|++
T Consensus 155 ----------~~~i~~~~~~~~~~~-~~-~~~~~~~---~~~~~g~-------pDG~~vD~~G~-l~va~~--~~~~I~~ 209 (246)
T PF08450_consen 155 ----------NGRIWRFDLDADGGE-LS-NRRVFID---FPGGPGY-------PDGLAVDSDGN-LWVADW--GGGRIVV 209 (246)
T ss_dssp ----------TTEEEEEEEETTTCC-EE-EEEEEEE----SSSSCE-------EEEEEEBTTS--EEEEEE--TTTEEEE
T ss_pred ----------cceeEEEeccccccc-ee-eeeeEEE---cCCCCcC-------CCcceEcCCCC-EEEEEc--CCCEEEE
Confidence 346999998653331 11 0011111 1110001 22466778886 655433 3346888
Q ss_pred EECCCCcEEE-ecCCCCCceeEEee-ecCCEEEEEEe
Q 003886 473 VNVSSGELLR-ITPAESNFSWSLLT-LDGDNIIAVSS 507 (789)
Q Consensus 473 ~dl~tg~~~~-lt~~~~~~~~~~~s-~dg~~l~~~~s 507 (789)
++.+ |++.. +...........|. ++.+.|+.+.+
T Consensus 210 ~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 210 FDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred ECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 8986 65444 43332333444553 45667766653
No 220
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=98.43 E-value=1.6e-05 Score=78.06 Aligned_cols=229 Identities=11% Similarity=0.089 Sum_probs=140.7
Q ss_pred cceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCc----eE
Q 003886 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE----VQ 286 (789)
Q Consensus 211 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~----~~ 286 (789)
..+.|++|+++|+.++.+..- -.|+.-+.......+-...|+-.-.|+|.......+.-++..-++++.+.+ ++
T Consensus 59 ~~~~ws~Dsr~ivSaSqDGkl--IvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~ 136 (343)
T KOG0286|consen 59 YAMDWSTDSRRIVSASQDGKL--IVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVR 136 (343)
T ss_pred eeeEecCCcCeEEeeccCCeE--EEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccce
Confidence 689999999999988876532 245544445555556677888888888886444444456666777776441 11
Q ss_pred eccCCCCC-CccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCee
Q 003886 287 AVKGIPKS-LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV 365 (789)
Q Consensus 287 ~l~~~~~~-~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 365 (789)
.....+++ .....-.|-+|+. |+-.+ .+....++|++ .+...+
T Consensus 137 v~r~l~gHtgylScC~f~dD~~-----ilT~S---------------GD~TCalWDie----------------~g~~~~ 180 (343)
T KOG0286|consen 137 VSRELAGHTGYLSCCRFLDDNH-----ILTGS---------------GDMTCALWDIE----------------TGQQTQ 180 (343)
T ss_pred eeeeecCccceeEEEEEcCCCc-----eEecC---------------CCceEEEEEcc----------------cceEEE
Confidence 11112333 2445556777765 55443 22345566762 344566
Q ss_pred ecCCCCCccCcceecC-CCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCcccccc
Q 003886 366 NLTESISSAFFPRFSP-DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSS 444 (789)
Q Consensus 366 ~Lt~~~~~~~~p~~Sp-DG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~ 444 (789)
.+..+.+.+....++| |+++++..+-+ ..-++||...+.-.+. |+| ...
T Consensus 181 ~f~GH~gDV~slsl~p~~~ntFvSg~cD-----------~~aklWD~R~~~c~qt------------------F~g-hes 230 (343)
T KOG0286|consen 181 VFHGHTGDVMSLSLSPSDGNTFVSGGCD-----------KSAKLWDVRSGQCVQT------------------FEG-HES 230 (343)
T ss_pred EecCCcccEEEEecCCCCCCeEEecccc-----------cceeeeeccCcceeEe------------------ecc-ccc
Confidence 7778888999999999 99976544433 2467888877544321 222 223
Q ss_pred CCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC---CceeEEeeecCCEEEEEEeCCC
Q 003886 445 SILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES---NFSWSLLTLDGDNIIAVSSSPV 510 (789)
Q Consensus 445 ~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~---~~~~~~~s~dg~~l~~~~ss~~ 510 (789)
.+..+.|-|+|. -+.+.++++..++|-+. ..+...+..... .+....||..|+.|++-+.+.+
T Consensus 231 DINsv~ffP~G~-afatGSDD~tcRlyDlR--aD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~ 296 (343)
T KOG0286|consen 231 DINSVRFFPSGD-AFATGSDDATCRLYDLR--ADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFT 296 (343)
T ss_pred ccceEEEccCCC-eeeecCCCceeEEEeec--CCcEEeeeccCcccCCceeEEEcccccEEEeeecCCc
Confidence 456788999997 44677778888888554 443333332222 3444678888877666555443
No 221
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.40 E-value=3.5e-05 Score=76.76 Aligned_cols=54 Identities=4% Similarity=-0.157 Sum_probs=34.8
Q ss_pred cCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeec
Q 003886 444 SSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLD 498 (789)
Q Consensus 444 ~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~d 498 (789)
.++.-++|++|+.++ .+.++.-...||.+|+..-++..+.-....+....+.|.
T Consensus 319 ~g~g~lafs~Ds~y~-aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~ 372 (447)
T KOG4497|consen 319 CGAGKLAFSCDSTYA-ATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPG 372 (447)
T ss_pred cccceeeecCCceEE-eeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCC
Confidence 356678999998644 555566678899999977776655444333333344443
No 222
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.39 E-value=3.8e-05 Score=77.64 Aligned_cols=159 Identities=17% Similarity=0.139 Sum_probs=105.0
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
..+.+.+.+|+.+.++.-... .+--+|..+.......++ +...+| ....||.||..||..-
T Consensus 65 ~svFavsl~P~~~l~aTGGgD-----D~AflW~~~~ge~~~elt-gHKDSV------t~~~FshdgtlLATGd------- 125 (399)
T KOG0296|consen 65 DSVFAVSLHPNNNLVATGGGD-----DLAFLWDISTGEFAGELT-GHKDSV------TCCSFSHDGTLLATGD------- 125 (399)
T ss_pred CceEEEEeCCCCceEEecCCC-----ceEEEEEccCCcceeEec-CCCCce------EEEEEccCceEEEecC-------
Confidence 458899999976666643222 244555322222333332 222333 7899999999988742
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCC-CccceEEEeeCCCCCccE
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLHQY 312 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~-~~~~~~~wSPDg~~~~~~ 312 (789)
-...|.++...+|..+.. +... ....-+.|.|-+..
T Consensus 126 -------------------------------------msG~v~v~~~stg~~~~~--~~~e~~dieWl~WHp~a~i---- 162 (399)
T KOG0296|consen 126 -------------------------------------MSGKVLVFKVSTGGEQWK--LDQEVEDIEWLKWHPRAHI---- 162 (399)
T ss_pred -------------------------------------CCccEEEEEcccCceEEE--eecccCceEEEEecccccE----
Confidence 235688889888877655 3322 24456789997764
Q ss_pred EEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecC
Q 003886 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (789)
Q Consensus 313 l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~ 392 (789)
|++.+ ..+.||.+.++ ..+..+.+..+...+..=.|.||||+|+....+
T Consensus 163 llAG~---------------~DGsvWmw~ip----------------~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d 211 (399)
T KOG0296|consen 163 LLAGS---------------TDGSVWMWQIP----------------SQALCKVMSGHNSPCTCGEFIPDGKRILTGYDD 211 (399)
T ss_pred EEeec---------------CCCcEEEEECC----------------CcceeeEecCCCCCcccccccCCCceEEEEecC
Confidence 44433 33478888884 336667777777788888999999999877754
Q ss_pred CCCCCCCccccceeEEeecCCCCC
Q 003886 393 SSVDSGAHSATDSLHRIDWPTNGN 416 (789)
Q Consensus 393 ~~~~~g~~~~~~~L~~~d~~~~~~ 416 (789)
. .|.+||+.++..
T Consensus 212 g-----------ti~~Wn~ktg~p 224 (399)
T KOG0296|consen 212 G-----------TIIVWNPKTGQP 224 (399)
T ss_pred c-----------eEEEEecCCCce
Confidence 3 599999988765
No 223
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.39 E-value=6e-06 Score=84.41 Aligned_cols=100 Identities=25% Similarity=0.395 Sum_probs=66.2
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHHHH---CCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCC
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSS---VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~---~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (789)
.|.|+++||.+.. ...|......+.. . |.++.+|.|| +|.+. .. ........+.+..+.+. .
T Consensus 21 ~~~i~~~hg~~~~--~~~~~~~~~~~~~~~~~-~~~~~~d~~g---~g~s~-~~------~~~~~~~~~~~~~~~~~--~ 85 (282)
T COG0596 21 GPPLVLLHGFPGS--SSVWRPVFKVLPALAAR-YRVIAPDLRG---HGRSD-PA------GYSLSAYADDLAALLDA--L 85 (282)
T ss_pred CCeEEEeCCCCCc--hhhhHHHHHHhhccccc-eEEEEecccC---CCCCC-cc------cccHHHHHHHHHHHHHH--h
Confidence 4589999998775 3334332222322 3 9999999997 44443 00 11122223444444443 2
Q ss_pred CCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 669 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
...++.++|||+||.++..++.++|++++++|+.++..
T Consensus 86 ~~~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~~~ 123 (282)
T COG0596 86 GLEKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAP 123 (282)
T ss_pred CCCceEEEEecccHHHHHHHHHhcchhhheeeEecCCC
Confidence 33449999999999999999999999999999998654
No 224
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.36 E-value=8.6e-07 Score=87.86 Aligned_cols=140 Identities=18% Similarity=0.227 Sum_probs=89.0
Q ss_pred EEeCCCCCeEEEEecCCCCCCeEEEEecCC--ceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCc
Q 003886 159 VVPSPSGSKLLVVRNPENESPIQFELWSQS--QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTF 236 (789)
Q Consensus 159 ~~~SPdG~~la~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~ 236 (789)
-.|||+|++||..++-. .+|.+.. +..+++.+-..+ ..+.|+.|.-+|..++..
T Consensus 14 c~fSp~g~yiAs~~~yr------lviRd~~tlq~~qlf~cldki----------~yieW~ads~~ilC~~yk-------- 69 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRYR------LVIRDSETLQLHQLFLCLDKI----------VYIEWKADSCHILCVAYK-------- 69 (447)
T ss_pred eeECCCCCeeeeeeeeE------EEEeccchhhHHHHHHHHHHh----------hheeeeccceeeeeeeec--------
Confidence 36999999999875531 2232221 222222222222 578899999999887543
Q ss_pred cCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEE
Q 003886 237 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFV 316 (789)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~ 316 (789)
++.+++|++..-+...-. -.+........|||||+. |.-+
T Consensus 70 -----------------------------------~~~vqvwsl~Qpew~ckI-deg~agls~~~WSPdgrh----iL~t 109 (447)
T KOG4497|consen 70 -----------------------------------DPKVQVWSLVQPEWYCKI-DEGQAGLSSISWSPDGRH----ILLT 109 (447)
T ss_pred -----------------------------------cceEEEEEeecceeEEEe-ccCCCcceeeeECCCcce----Eeee
Confidence 367889998766654321 234456778999999999 8877
Q ss_pred eecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCC
Q 003886 317 GWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (789)
Q Consensus 317 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~ 393 (789)
+. ....|-++.+ .+.....|..........+|.|||++-+..+.++
T Consensus 110 se--------------F~lriTVWSL-----------------~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrD 155 (447)
T KOG4497|consen 110 SE--------------FDLRITVWSL-----------------NTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRD 155 (447)
T ss_pred ec--------------ceeEEEEEEe-----------------ccceeEEecccccCceeEEECCCCceeeeeeccc
Confidence 62 1123444444 3444444444444457789999999998888764
No 225
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.36 E-value=3.4e-05 Score=86.71 Aligned_cols=174 Identities=16% Similarity=0.136 Sum_probs=113.6
Q ss_pred CceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhh
Q 003886 272 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (789)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (789)
+..+.++....++...+. ..-......++++-+|+. +++.+. +..|-+++..
T Consensus 75 ~~tv~~y~fps~~~~~iL-~Rftlp~r~~~v~g~g~~----iaagsd---------------D~~vK~~~~~-------- 126 (933)
T KOG1274|consen 75 QNTVLRYKFPSGEEDTIL-ARFTLPIRDLAVSGSGKM----IAAGSD---------------DTAVKLLNLD-------- 126 (933)
T ss_pred cceEEEeeCCCCCcccee-eeeeccceEEEEecCCcE----EEeecC---------------ceeEEEEecc--------
Confidence 466777887777665331 334557788999999999 998873 2357777773
Q ss_pred hhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeee
Q 003886 352 LELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 431 (789)
Q Consensus 352 ~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~ 431 (789)
+....+.+..+.+.+....|+|.|+.||..+-++ .+++||++.+.......+.. +
T Consensus 127 --------D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG-----------~v~iw~~~~~~~~~tl~~v~---k--- 181 (933)
T KOG1274|consen 127 --------DSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDG-----------KVQIWDLQDGILSKTLTGVD---K--- 181 (933)
T ss_pred --------ccchheeecccCCceeeeeEcCCCCEEEEEecCc-----------eEEEEEcccchhhhhcccCC---c---
Confidence 5566778888888999999999999999887553 59999998765532211111 0
Q ss_pred ccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCC---CCceeEEeeecCCEEEEEE
Q 003886 432 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE---SNFSWSLLTLDGDNIIAVS 506 (789)
Q Consensus 432 ~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~---~~~~~~~~s~dg~~l~~~~ 506 (789)
+.+|. -......++|+|+|.++++...+ +. +..++.++.+........ ..++..+|+|.|.+|+...
T Consensus 182 ---~n~~~--~s~i~~~~aW~Pk~g~la~~~~d-~~--Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~ 251 (933)
T KOG1274|consen 182 ---DNEFI--LSRICTRLAWHPKGGTLAVPPVD-NT--VKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAAST 251 (933)
T ss_pred ---ccccc--ccceeeeeeecCCCCeEEeeccC-Ce--EEEEccCCceeheeecccccccceEEEEEcCCCcEEeeec
Confidence 01111 01223578999998888776543 23 344455566554332221 2366778999998877653
No 226
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=98.35 E-value=4.1e-06 Score=79.73 Aligned_cols=139 Identities=19% Similarity=0.282 Sum_probs=83.2
Q ss_pred EEEEcCCCCCCCchhhHHHH-HHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccE
Q 003886 595 IVVLHGGPHSVSLSSYSKSL-AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKV 673 (789)
Q Consensus 595 vv~~HGg~~~~~~~~~~~~~-~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv 673 (789)
|+++||..++.. ..|.... +.|... +.|-.+|.- ..+.++..+.++..+.. +| +.+
T Consensus 1 v~IvhG~~~s~~-~HW~~wl~~~l~~~-~~V~~~~~~------------------~P~~~~W~~~l~~~i~~--~~-~~~ 57 (171)
T PF06821_consen 1 VLIVHGYGGSPP-DHWQPWLERQLENS-VRVEQPDWD------------------NPDLDEWVQALDQAIDA--ID-EPT 57 (171)
T ss_dssp EEEE--TTSSTT-TSTHHHHHHHHTTS-EEEEEC--T------------------S--HHHHHHHHHHCCHC---T-TTE
T ss_pred CEEeCCCCCCCc-cHHHHHHHHhCCCC-eEEeccccC------------------CCCHHHHHHHHHHHHhh--cC-CCe
Confidence 678999766543 4555444 456555 677766641 22355555655554443 33 459
Q ss_pred EEEEcCccHHHHHHHH-HhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcCcc
Q 003886 674 TVVGGSHGGFLTTHLI-GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPI 752 (789)
Q Consensus 674 ~l~G~S~GG~~a~~~~-~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 752 (789)
.++|||+|+..+++++ .+...+++++++++|....... .. .+. ...+ .+.
T Consensus 58 ilVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~~~~~-~~--~~~-----------~~~f---------------~~~ 108 (171)
T PF06821_consen 58 ILVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDPDDPE-PF--PPE-----------LDGF---------------TPL 108 (171)
T ss_dssp EEEEETHHHHHHHHHHHHTCCSSEEEEEEES--SCGCHH-CC--TCG-----------GCCC---------------TTS
T ss_pred EEEEeCHHHHHHHHHHhhcccccccEEEEEcCCCccccc-ch--hhh-----------cccc---------------ccC
Confidence 9999999999999999 7677899999999997531000 00 000 0000 001
Q ss_pred ccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 753 SHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 753 ~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
....+..|.+++.+++|+.||++.+.++.+.+.
T Consensus 109 -p~~~l~~~~~viaS~nDp~vp~~~a~~~A~~l~ 141 (171)
T PF06821_consen 109 -PRDPLPFPSIVIASDNDPYVPFERAQRLAQRLG 141 (171)
T ss_dssp -HCCHHHCCEEEEEETTBSSS-HHHHHHHHHHHT
T ss_pred -cccccCCCeEEEEcCCCCccCHHHHHHHHHHcC
Confidence 112334566999999999999999999998874
No 227
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=0.00021 Score=76.05 Aligned_cols=299 Identities=13% Similarity=0.106 Sum_probs=159.8
Q ss_pred EecCCCCCceEE-EEEeec-hhhcccceeEEEEEEeecCCCCccceee--cCCcceecccEEEEeCCCCCeEEEEecCCC
Q 003886 101 FNSGNGNGTQAM-FSISQP-NLLANKRKKFMLSTVISKENENSVTFQW--APFPVEMTGASAVVPSPSGSKLLVVRNPEN 176 (789)
Q Consensus 101 ~~~~spdg~~v~-~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~lt~--~~~~~~~~~~~~~~~SPdG~~la~~~~~~~ 176 (789)
+-..||.-++++ |+..-. .-..+.....|.++++.++ ...+-+.. ++. .-=....||-|++++|=+..+.
T Consensus 254 ~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG-~lkrsF~~~~~~~----~~WP~frWS~DdKy~Arm~~~s- 327 (698)
T KOG2314|consen 254 FIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG-LLKRSFPVIKSPY----LKWPIFRWSHDDKYFARMTGNS- 327 (698)
T ss_pred eeecCCccceEEEecCCccccCcccCCCceEEEEEcccc-chhcceeccCCCc----cccceEEeccCCceeEEeccce-
Confidence 344567777663 332211 1111234457888888443 21121111 111 1122467999999998654422
Q ss_pred CCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCc
Q 003886 177 ESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQ 256 (789)
Q Consensus 177 ~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (789)
+.|...-. -.+++...-.-.. +.+++|||-+..|||-......
T Consensus 328 -----isIyEtps-f~lld~Kslki~g------Ir~FswsP~~~llAYwtpe~~~------------------------- 370 (698)
T KOG2314|consen 328 -----ISIYETPS-FMLLDKKSLKISG------IRDFSWSPTSNLLAYWTPETNN------------------------- 370 (698)
T ss_pred -----EEEEecCc-eeeecccccCCcc------ccCcccCCCcceEEEEcccccC-------------------------
Confidence 23332211 2222221111011 1689999999999997554321
Q ss_pred ceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCcee-eeeeeeccCCc
Q 003886 257 GDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRK-LGIKYCYNRPC 335 (789)
Q Consensus 257 ~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~-~g~~~~~~~~~ 335 (789)
....+-++.+.++...+.. ---+..--...|-..|+. |.|-..+....+ .|..+ +-
T Consensus 371 --------------~parvtL~evPs~~~iRt~-nlfnVsDckLhWQk~gdy----LcvkvdR~tK~~~~g~f~----n~ 427 (698)
T KOG2314|consen 371 --------------IPARVTLMEVPSKREIRTK-NLFNVSDCKLHWQKSGDY----LCVKVDRHTKSKVKGQFS----NL 427 (698)
T ss_pred --------------CcceEEEEecCccceeeec-cceeeeccEEEeccCCcE----EEEEEEeeccccccceEe----eE
Confidence 1133455565555433321 011233446789999998 988776665433 22221 23
Q ss_pred ceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCC
Q 003886 336 ALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (789)
Q Consensus 336 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~ 415 (789)
.|++++= ..-.+..+ +-...+...+|-|.|.+++.++.... ...+-.|..++..
T Consensus 428 eIfrire-----------------KdIpve~v-elke~vi~FaWEP~gdkF~vi~g~~~--------k~tvsfY~~e~~~ 481 (698)
T KOG2314|consen 428 EIFRIRE-----------------KDIPVEVV-ELKESVIAFAWEPHGDKFAVISGNTV--------KNTVSFYAVETNI 481 (698)
T ss_pred EEEEeec-----------------cCCCceee-ecchheeeeeeccCCCeEEEEEcccc--------ccceeEEEeecCC
Confidence 5676652 22222222 12334678899999999999987652 2334444444322
Q ss_pred CC-CcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCC-CCCceeE
Q 003886 416 NF-SSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA-ESNFSWS 493 (789)
Q Consensus 416 ~~-~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~-~~~~~~~ 493 (789)
.+ .+....+. .....+.|||.|+.+++.+-......|+-+|++-...+++... +...+..
T Consensus 482 ~~~~lVk~~dk------------------~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~v 543 (698)
T KOG2314|consen 482 KKPSLVKELDK------------------KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEV 543 (698)
T ss_pred Cchhhhhhhcc------------------cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccc
Confidence 11 11111110 0123568999999888877666667788888764455444322 2234556
Q ss_pred EeeecCCEEEEEEeCC
Q 003886 494 LLTLDGDNIIAVSSSP 509 (789)
Q Consensus 494 ~~s~dg~~l~~~~ss~ 509 (789)
.|.|.|++++...+..
T Consensus 544 eWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 544 EWDPTGRYVVTSSSSW 559 (698)
T ss_pred eECCCCCEEEEeeehh
Confidence 8899999988777665
No 228
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=98.35 E-value=4.3e-06 Score=85.39 Aligned_cols=242 Identities=10% Similarity=0.058 Sum_probs=148.6
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
..+....||++|.+++-...+ ..+.+|. .-+..+.+.- .| ++.+.+++|||...+++..+++...+
T Consensus 139 s~Vr~m~ws~~g~wmiSgD~g-----G~iKyWqpnmnnVk~~~a---hh-----~eaIRdlafSpnDskF~t~SdDg~ik 205 (464)
T KOG0284|consen 139 SPVRTMKWSHNGTWMISGDKG-----GMIKYWQPNMNNVKIIQA---HH-----AEAIRDLAFSPNDSKFLTCSDDGTIK 205 (464)
T ss_pred ccceeEEEccCCCEEEEcCCC-----ceEEecccchhhhHHhhH---hh-----hhhhheeccCCCCceeEEecCCCeEE
Confidence 348889999999999754333 3677783 2222333221 11 12338999999888788777776554
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccE
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 312 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~ 312 (789)
.|+-...++......+.--+....|.|.-|...++.+++-+.+||..+|....-. ......+-.+.|+|+|.+
T Consensus 206 --iWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tl-h~HKntVl~~~f~~n~N~---- 278 (464)
T KOG0284|consen 206 --IWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATL-HGHKNTVLAVKFNPNGNW---- 278 (464)
T ss_pred --EEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhh-hhccceEEEEEEcCCCCe----
Confidence 3432222232333333333335667777788888888889999999988654321 222346779999999988
Q ss_pred EEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecC
Q 003886 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (789)
Q Consensus 313 l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~ 392 (789)
|+-.+ +++.+.++|+. .-.++.....+...+....|+|=-.-|+.+..-
T Consensus 279 Llt~s---------------kD~~~kv~DiR----------------~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~ 327 (464)
T KOG0284|consen 279 LLTGS---------------KDQSCKVFDIR----------------TMKELFTYRGHKKDVTSLTWHPLNESLFTSGGS 327 (464)
T ss_pred eEEcc---------------CCceEEEEehh----------------HhHHHHHhhcchhhheeeccccccccceeeccC
Confidence 77766 44567788872 234455555566678889999987766544422
Q ss_pred CCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003886 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (789)
Q Consensus 393 ~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (789)
..+|..+.+...+........ .+..+-++.|.|=|. |+.+++.+.....|.
T Consensus 328 ----------Dgsvvh~~v~~~~p~~~i~~A------------------Hd~~iwsl~~hPlGh-il~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 328 ----------DGSVVHWVVGLEEPLGEIPPA------------------HDGEIWSLAYHPLGH-ILATGSNDRTVRFWT 378 (464)
T ss_pred ----------CCceEEEeccccccccCCCcc------------------cccceeeeeccccce-eEeecCCCcceeeec
Confidence 235766766532322111110 112355778999986 767776666666665
Q ss_pred EEC
Q 003886 473 VNV 475 (789)
Q Consensus 473 ~dl 475 (789)
-+.
T Consensus 379 r~r 381 (464)
T KOG0284|consen 379 RNR 381 (464)
T ss_pred cCC
Confidence 443
No 229
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=98.32 E-value=7.9e-06 Score=78.63 Aligned_cols=206 Identities=13% Similarity=0.117 Sum_probs=106.4
Q ss_pred ecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCC
Q 003886 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (789)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~ 648 (789)
.-.+|..+..|--.|++. ..+++|+||+..|.+. ....|...+.+|+..||.|+-+|..-..| .+... +....-
T Consensus 8 ~~~~~~~I~vwet~P~~~-~~~~~~tiliA~Gf~r--rmdh~agLA~YL~~NGFhViRyDsl~HvG--lSsG~-I~eftm 81 (294)
T PF02273_consen 8 RLEDGRQIRVWETRPKNN-EPKRNNTILIAPGFAR--RMDHFAGLAEYLSANGFHVIRYDSLNHVG--LSSGD-INEFTM 81 (294)
T ss_dssp EETTTEEEEEEEE---TT-S---S-EEEEE-TT-G--GGGGGHHHHHHHHTTT--EEEE---B----------------H
T ss_pred EcCCCCEEEEeccCCCCC-CcccCCeEEEecchhH--HHHHHHHHHHHHhhCCeEEEecccccccc--CCCCC-hhhcch
Confidence 345789999999999853 4567799999988444 45677788899999999999999753222 21110 111111
Q ss_pred cccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchh--hhhc
Q 003886 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY--VESY 726 (789)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~--~~~~ 726 (789)
....+++..+++|+.++| ..+++++..|.-|-+|...+++ . ...-+|...||.++..-....-..++.- .+.+
T Consensus 82 s~g~~sL~~V~dwl~~~g---~~~~GLIAaSLSaRIAy~Va~~-i-~lsfLitaVGVVnlr~TLe~al~~Dyl~~~i~~l 156 (294)
T PF02273_consen 82 SIGKASLLTVIDWLATRG---IRRIGLIAASLSARIAYEVAAD-I-NLSFLITAVGVVNLRDTLEKALGYDYLQLPIEQL 156 (294)
T ss_dssp HHHHHHHHHHHHHHHHTT------EEEEEETTHHHHHHHHTTT-S---SEEEEES--S-HHHHHHHHHSS-GGGS-GGG-
T ss_pred HHhHHHHHHHHHHHHhcC---CCcchhhhhhhhHHHHHHHhhc-c-CcceEEEEeeeeeHHHHHHHHhccchhhcchhhC
Confidence 122578999999999775 5679999999999999999985 4 3677777789998854321100000000 0000
Q ss_pred cCccccccCCCCC--hhhHHHHH--hcC----ccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 727 GSKGKDSFTESPS--VEDLTRFH--SKS----PISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 727 ~~~~~~~~~~~~~--~~~~~~~~--~~s----p~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.. .. .+.+... ........ .+. ....++.+.+|++.+++++|..|......++.+.+..
T Consensus 157 p~-dl-dfeGh~l~~~vFv~dc~e~~w~~l~ST~~~~k~l~iP~iaF~A~~D~WV~q~eV~~~~~~~~s 223 (294)
T PF02273_consen 157 PE-DL-DFEGHNLGAEVFVTDCFEHGWDDLDSTINDMKRLSIPFIAFTANDDDWVKQSEVEELLDNINS 223 (294)
T ss_dssp -S-EE-EETTEEEEHHHHHHHHHHTT-SSHHHHHHHHTT--S-EEEEEETT-TTS-HHHHHHHHTT-TT
T ss_pred CC-cc-cccccccchHHHHHHHHHcCCccchhHHHHHhhCCCCEEEEEeCCCccccHHHHHHHHHhcCC
Confidence 00 00 0000000 00111111 122 2345788899999999999999999999999876643
No 230
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=98.31 E-value=0.00016 Score=70.28 Aligned_cols=177 Identities=13% Similarity=0.108 Sum_probs=109.4
Q ss_pred cCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhh
Q 003886 271 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (789)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (789)
.+..+.+||+++|+.... ..-...+..+.|+++|.. ++++.... .| ..+.|...|++..++
T Consensus 72 AD~t~kLWDv~tGk~la~--~k~~~~Vk~~~F~~~gn~----~l~~tD~~----mg------~~~~v~~fdi~~~~~--- 132 (327)
T KOG0643|consen 72 ADQTAKLWDVETGKQLAT--WKTNSPVKRVDFSFGGNL----ILASTDKQ----MG------YTCFVSVFDIRDDSS--- 132 (327)
T ss_pred ccceeEEEEcCCCcEEEE--eecCCeeEEEeeccCCcE----EEEEehhh----cC------cceEEEEEEccCChh---
Confidence 446788999999998777 566677889999999998 88877422 11 345677777742111
Q ss_pred hhhhhcCCCCCCC-eeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEee
Q 003886 351 ELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 429 (789)
Q Consensus 351 ~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~ 429 (789)
...+.+ ...+......+...-|+|-|+.|+....+. .|-.||..+|....-....
T Consensus 133 -------~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G-----------~is~~da~~g~~~v~s~~~------ 188 (327)
T KOG0643|consen 133 -------DIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDG-----------SISIYDARTGKELVDSDEE------ 188 (327)
T ss_pred -------hhcccCceEEecCCccceeeeeecccCCEEEEecCCC-----------cEEEEEcccCceeeechhh------
Confidence 002233 455555556788899999999987655442 5889998876542111110
Q ss_pred eeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEE
Q 003886 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAV 505 (789)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~ 505 (789)
....+..+++++|.. .+++++.+....|+-+. +=++.+-..........+++|--+.++..
T Consensus 189 ------------h~~~Ind~q~s~d~T-~FiT~s~Dttakl~D~~--tl~v~Kty~te~PvN~aaisP~~d~Vilg 249 (327)
T KOG0643|consen 189 ------------HSSKINDLQFSRDRT-YFITGSKDTTAKLVDVR--TLEVLKTYTTERPVNTAAISPLLDHVILG 249 (327)
T ss_pred ------------hccccccccccCCcc-eEEecccCccceeeecc--ceeeEEEeeecccccceecccccceEEec
Confidence 113467889999976 55677767666666443 43333222222223445666655554443
No 231
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=98.30 E-value=1.6e-06 Score=86.06 Aligned_cols=114 Identities=22% Similarity=0.237 Sum_probs=77.0
Q ss_pred CCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCC-------------C-chhhcc-----------
Q 003886 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGF-------------G-EEALQS----------- 642 (789)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~-------------G-~~~~~~----------- 642 (789)
++.|+|+|||-||-+++ ..-|+..+.-||++||+|.+++.|-..-. + +.+..-
T Consensus 114 k~~k~PvvvFSHGLggs--Rt~YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ir~v~~~ekef~ 191 (399)
T KOG3847|consen 114 KNDKYPVVVFSHGLGGS--RTLYSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIKIRLVEANEKEFH 191 (399)
T ss_pred CCCCccEEEEecccccc--hhhHHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceEeeeeccCceeEE
Confidence 47899999999996553 55677788899999999999999853111 0 000000
Q ss_pred CCCCCCcccHHHHHHHHHHHHH---------------------cCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEE
Q 003886 643 LPGKVGSQDVNDVLTAIDHVID---------------------MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAA 701 (789)
Q Consensus 643 ~~~~~~~~~~~D~~~~i~~l~~---------------------~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~ 701 (789)
++...-.+.+.++..|++-+.+ ++.+|..++.|+|||+||..++...+.+. .|+|+|+
T Consensus 192 irNeqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~ss~~t-~FrcaI~ 270 (399)
T KOG3847|consen 192 IRNEQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASSSSHT-DFRCAIA 270 (399)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhhcccc-ceeeeee
Confidence 0000001124566666664432 13377889999999999999998888654 6999988
Q ss_pred eCC
Q 003886 702 RNP 704 (789)
Q Consensus 702 ~~p 704 (789)
..+
T Consensus 271 lD~ 273 (399)
T KOG3847|consen 271 LDA 273 (399)
T ss_pred eee
Confidence 765
No 232
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=98.29 E-value=0.00014 Score=70.81 Aligned_cols=145 Identities=17% Similarity=0.234 Sum_probs=90.1
Q ss_pred ccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC---eeecCCCCC
Q 003886 296 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP---VVNLTESIS 372 (789)
Q Consensus 296 ~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~Lt~~~~ 372 (789)
.+.+++|||.|+. |+..+.+. .+.++.- ..++ ...|..+..
T Consensus 63 sVRsvAwsp~g~~----La~aSFD~---------------t~~Iw~k-----------------~~~efecv~~lEGHEn 106 (312)
T KOG0645|consen 63 SVRSVAWSPHGRY----LASASFDA---------------TVVIWKK-----------------EDGEFECVATLEGHEN 106 (312)
T ss_pred eeeeeeecCCCcE----EEEeeccc---------------eEEEeec-----------------CCCceeEEeeeecccc
Confidence 6789999999998 88877432 2222221 1222 345666677
Q ss_pred ccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccc
Q 003886 373 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 452 (789)
Q Consensus 373 ~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws 452 (789)
.+-..+||++|.+||..+.+. ++|+|....++.. +...+.+. +...+-.+.|.
T Consensus 107 EVK~Vaws~sG~~LATCSRDK-----------SVWiWe~deddEf-------ec~aVL~~---------HtqDVK~V~WH 159 (312)
T KOG0645|consen 107 EVKCVAWSASGNYLATCSRDK-----------SVWIWEIDEDDEF-------ECIAVLQE---------HTQDVKHVIWH 159 (312)
T ss_pred ceeEEEEcCCCCEEEEeeCCC-----------eEEEEEecCCCcE-------EEEeeecc---------ccccccEEEEc
Confidence 788999999999999998665 5888887654432 22222221 11124467899
Q ss_pred cCCCEEEEEEEeCCeEEEEEEECCCCcE--E-EecCCCCCceeEEeeecCCEEEEE
Q 003886 453 SDGCTMLLSSIWGSSQVIISVNVSSGEL--L-RITPAESNFSWSLLTLDGDNIIAV 505 (789)
Q Consensus 453 ~Dg~~l~~~~~~~~~~~l~~~dl~tg~~--~-~lt~~~~~~~~~~~s~dg~~l~~~ 505 (789)
|--. |+|+.+.+....+|+-+. .+.. . .|......+-...|.+.|.+|+..
T Consensus 160 Pt~d-lL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~ 213 (312)
T KOG0645|consen 160 PTED-LLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFDNIGSRLVSC 213 (312)
T ss_pred CCcc-eeEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEEEecCCCceEEEe
Confidence 8654 779988888999998764 3332 2 232222223334667777666543
No 233
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=98.28 E-value=6.4e-06 Score=94.94 Aligned_cols=96 Identities=19% Similarity=0.201 Sum_probs=66.7
Q ss_pred CCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhc-c-------CCCC--------------CC
Q 003886 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQ-S-------LPGK--------------VG 648 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~-~-------~~~~--------------~~ 648 (789)
..|+||++||..+. ...|......|+++||.|+++|+|| ||++... . .... --
T Consensus 448 g~P~VVllHG~~g~--~~~~~~lA~~La~~Gy~VIaiDlpG---HG~S~~~~~~~~~~a~~~~~~~y~Nl~~l~~aRDn~ 522 (792)
T TIGR03502 448 GWPVVIYQHGITGA--KENALAFAGTLAAAGVATIAIDHPL---HGARSFDANASGVNATNANVLAYMNLASLLVARDNL 522 (792)
T ss_pred CCcEEEEeCCCCCC--HHHHHHHHHHHHhCCcEEEEeCCCC---CCccccccccccccccccCccceeccccccccccCH
Confidence 46899999996553 5577778889999999999999998 4444111 0 0000 11
Q ss_pred cccHHHHHHHHHHHH------Hc----CCCCCccEEEEEcCccHHHHHHHHHh
Q 003886 649 SQDVNDVLTAIDHVI------DM----GLANPSKVTVVGGSHGGFLTTHLIGQ 691 (789)
Q Consensus 649 ~~~~~D~~~~i~~l~------~~----~~~d~~rv~l~G~S~GG~~a~~~~~~ 691 (789)
.+.+.|+......+. +. ...+..+|.++||||||+++..++..
T Consensus 523 rQ~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~ 575 (792)
T TIGR03502 523 RQSILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAY 575 (792)
T ss_pred HHHHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHh
Confidence 223567666666655 11 12567899999999999999998875
No 234
>PLN00181 protein SPA1-RELATED; Provisional
Probab=98.28 E-value=0.00011 Score=88.68 Aligned_cols=209 Identities=14% Similarity=0.110 Sum_probs=115.4
Q ss_pred cccEEEEeCC-CCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceee-cCCCCEEEEEeecC
Q 003886 154 TGASAVVPSP-SGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISW-NSDETLIAYVAEEP 229 (789)
Q Consensus 154 ~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~w-SpDg~~la~~~~~~ 229 (789)
..+...+|+| +|..|+..+..+ .+.+|+ .+.....+... ..+ ..+.| +++|+.|+..+.
T Consensus 576 ~~V~~l~~~p~~~~~L~Sgs~Dg-----~v~iWd~~~~~~~~~~~~~----~~v------~~v~~~~~~g~~latgs~-- 638 (793)
T PLN00181 576 KRVWSIDYSSADPTLLASGSDDG-----SVKLWSINQGVSIGTIKTK----ANI------CCVQFPSESGRSLAFGSA-- 638 (793)
T ss_pred CCEEEEEEcCCCCCEEEEEcCCC-----EEEEEECCCCcEEEEEecC----CCe------EEEEEeCCCCCEEEEEeC--
Confidence 4588899997 788877765443 566773 33333333221 122 57788 457888887643
Q ss_pred CCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCce--EeccCCCCCCccceEEEeeCCC
Q 003886 230 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV--QAVKGIPKSLSVGQVVWAPLNE 307 (789)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~--~~l~~~~~~~~~~~~~wSPDg~ 307 (789)
+..|++||+..++. ..+ ......+..+.|+ |+.
T Consensus 639 ------------------------------------------dg~I~iwD~~~~~~~~~~~--~~h~~~V~~v~f~-~~~ 673 (793)
T PLN00181 639 ------------------------------------------DHKVYYYDLRNPKLPLCTM--IGHSKTVSYVRFV-DSS 673 (793)
T ss_pred ------------------------------------------CCeEEEEECCCCCccceEe--cCCCCCEEEEEEe-CCC
Confidence 25788999876542 233 2223356788886 676
Q ss_pred CCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEE
Q 003886 308 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 387 (789)
Q Consensus 308 ~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la 387 (789)
. |+..+. +..|.++|+.... ..........+..+........|+|+|++|+
T Consensus 674 ~----lvs~s~---------------D~~ikiWd~~~~~----------~~~~~~~l~~~~gh~~~i~~v~~s~~~~~la 724 (793)
T PLN00181 674 T----LVSSST---------------DNTLKLWDLSMSI----------SGINETPLHSFMGHTNVKNFVGLSVSDGYIA 724 (793)
T ss_pred E----EEEEEC---------------CCEEEEEeCCCCc----------cccCCcceEEEcCCCCCeeEEEEcCCCCEEE
Confidence 6 665552 2256667762100 0001233456666665667789999999888
Q ss_pred EEecCCCCCCCCccccceeEEeecCCCCCCCc-ccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCC
Q 003886 388 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS-LEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 466 (789)
Q Consensus 388 ~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~-t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~ 466 (789)
..+.+. .+++|+......... .....+... ..... . ....+..++|+++|..| +++..+|
T Consensus 725 sgs~D~-----------~v~iw~~~~~~~~~s~~~~~~~~~~--~~~~~-~----~~~~V~~v~ws~~~~~l-va~~~dG 785 (793)
T PLN00181 725 TGSETN-----------EVFVYHKAFPMPVLSYKFKTIDPVS--GLEVD-D----ASQFISSVCWRGQSSTL-VAANSTG 785 (793)
T ss_pred EEeCCC-----------EEEEEECCCCCceEEEecccCCccc--ccccC-C----CCcEEEEEEEcCCCCeE-EEecCCC
Confidence 777543 588888654321100 000000000 00000 0 00124577899999855 5666667
Q ss_pred eEEEEE
Q 003886 467 SQVIIS 472 (789)
Q Consensus 467 ~~~l~~ 472 (789)
...||.
T Consensus 786 ~I~i~~ 791 (793)
T PLN00181 786 NIKILE 791 (793)
T ss_pred cEEEEe
Confidence 666664
No 235
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.26 E-value=5.4e-05 Score=77.61 Aligned_cols=163 Identities=18% Similarity=0.235 Sum_probs=92.5
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCce--------------eEEEe-cCCCccccccCCCcccceeecCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQL--------------EKEFH-VPQTVHGSVYADGWFEGISWNSD 218 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~--------------~~~~~-~~~~~~g~v~~d~~~~~~~wSpD 218 (789)
..+....|||+|..||-..+.+ ...+|..+.. ..+.. ...+ | .+....+.|+||
T Consensus 66 ~aVN~vRf~p~gelLASg~D~g-----~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~-h-----~~diydL~Ws~d 134 (434)
T KOG1009|consen 66 RAVNVVRFSPDGELLASGGDGG-----EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRG-H-----RDDIYDLAWSPD 134 (434)
T ss_pred ceeEEEEEcCCcCeeeecCCCc-----eEEEEEecCcCCccccchhhhCccceEEEEEecc-c-----ccchhhhhccCC
Confidence 3477889999999999765543 4556632210 00110 0011 1 122368899999
Q ss_pred CCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccc
Q 003886 219 ETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVG 298 (789)
Q Consensus 219 g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~ 298 (789)
+..+++.+.+ +.++.||+..|.+.... -.....+.
T Consensus 135 ~~~l~s~s~d--------------------------------------------ns~~l~Dv~~G~l~~~~-~dh~~yvq 169 (434)
T KOG1009|consen 135 SNFLVSGSVD--------------------------------------------NSVRLWDVHAGQLLAIL-DDHEHYVQ 169 (434)
T ss_pred Cceeeeeecc--------------------------------------------ceEEEEEeccceeEeec-cccccccc
Confidence 9999886543 67889999999887763 23345788
Q ss_pred eEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCC---CccC
Q 003886 299 QVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESI---SSAF 375 (789)
Q Consensus 299 ~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~---~~~~ 375 (789)
.++|.|-++. |+-.+.....+..+. +-...++++... .++........+...+|..+. ....
T Consensus 170 gvawDpl~qy----v~s~s~dr~~~~~~~----~~~~~~~~~~~~-------~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 170 GVAWDPLNQY----VASKSSDRHPEGFSA----KLKQVIKRHGLD-------IMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred eeecchhhhh----hhhhccCcccceeee----eeeeeeeeeeee-------EeeecccCCCCcceeeeeecCchhhhhh
Confidence 9999999887 776553332221111 111123333210 011111111334445565442 2466
Q ss_pred cceecCCCCEEE
Q 003886 376 FPRFSPDGKFLV 387 (789)
Q Consensus 376 ~p~~SpDG~~la 387 (789)
.++|+|||..|+
T Consensus 235 RlsfTPdG~llv 246 (434)
T KOG1009|consen 235 RLSFTPDGSLLV 246 (434)
T ss_pred hcccCCCCcEEE
Confidence 789999999766
No 236
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=98.26 E-value=0.0001 Score=73.17 Aligned_cols=180 Identities=14% Similarity=0.095 Sum_probs=97.5
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhh
Q 003886 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (789)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (789)
..|.+|++.+.-...+. .........+.||||+. |+..+...+ +.++.+-.+.. ++-
T Consensus 209 t~i~lw~lkGq~L~~id--tnq~~n~~aavSP~GRF----ia~~gFTpD---------------VkVwE~~f~kd--G~f 265 (420)
T KOG2096|consen 209 TKICLWDLKGQLLQSID--TNQSSNYDAAVSPDGRF----IAVSGFTPD---------------VKVWEPIFTKD--GTF 265 (420)
T ss_pred CcEEEEecCCceeeeec--cccccccceeeCCCCcE----EEEecCCCC---------------ceEEEEEeccC--cch
Confidence 67899999854444441 22335567889999998 888875444 22222211100 000
Q ss_pred hhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCC--C-CCCCcccceeeEEee
Q 003886 353 ELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT--N-GNFSSLEKIVDVIPV 429 (789)
Q Consensus 353 ~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~--~-~~~~~t~~~~~v~~~ 429 (789)
.+-..+-.|..+...+...+||++..+++..+.+. ..+||-.|+.= + ..+.+-.+
T Consensus 266 ------qev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG---------~wriwdtdVrY~~~qDpk~Lk~g------- 323 (420)
T KOG2096|consen 266 ------QEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG---------KWRIWDTDVRYEAGQDPKILKEG------- 323 (420)
T ss_pred ------hhhhhhheeccchhheeeeeeCCCcceeEEEecCC---------cEEEeeccceEecCCCchHhhcC-------
Confidence 01223446677777899999999999999888664 22343333211 1 11111000
Q ss_pred eeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecC-CC-CCceeEEeeecCCEEEEEEe
Q 003886 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP-AE-SNFSWSLLTLDGDNIIAVSS 507 (789)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~-~~-~~~~~~~~s~dg~~l~~~~s 507 (789)
..+. +-.| ....++..+|.|+.|.++. +. .|-.+...+|+...-.. .. +.++...|+++|++++....
T Consensus 324 -~~pl--~aag---~~p~RL~lsP~g~~lA~s~--gs--~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 324 -SAPL--HAAG---SEPVRLELSPSGDSLAVSF--GS--DLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD 393 (420)
T ss_pred -Ccch--hhcC---CCceEEEeCCCCcEEEeec--CC--ceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc
Confidence 0000 0000 1233677899999665542 33 34444555666543322 22 25566789999998765543
No 237
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=98.24 E-value=0.00015 Score=72.04 Aligned_cols=132 Identities=17% Similarity=0.222 Sum_probs=74.9
Q ss_pred cceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeec--C
Q 003886 335 CALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW--P 412 (789)
Q Consensus 335 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~--~ 412 (789)
..|.++++ .+.....+..........+.||||+.|+...-. .++.+|.. .
T Consensus 209 t~i~lw~l-----------------kGq~L~~idtnq~~n~~aavSP~GRFia~~gFT-----------pDVkVwE~~f~ 260 (420)
T KOG2096|consen 209 TKICLWDL-----------------KGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFT-----------PDVKVWEPIFT 260 (420)
T ss_pred CcEEEEec-----------------CCceeeeeccccccccceeeCCCCcEEEEecCC-----------CCceEEEEEec
Confidence 46888887 544444444444557788999999998865533 23555543 1
Q ss_pred CCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECC--CCcEE--------E
Q 003886 413 TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS--SGELL--------R 482 (789)
Q Consensus 413 ~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~--tg~~~--------~ 482 (789)
.++.. .++..++. ..| ....+..++||++++++ ++.+.+|..+||-.|+. -++-. .
T Consensus 261 kdG~f------qev~rvf~------LkG-H~saV~~~aFsn~S~r~-vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~p 326 (420)
T KOG2096|consen 261 KDGTF------QEVKRVFS------LKG-HQSAVLAAAFSNSSTRA-VTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAP 326 (420)
T ss_pred cCcch------hhhhhhhe------ecc-chhheeeeeeCCCccee-EEEecCCcEEEeeccceEecCCCchHhhcCCcc
Confidence 21211 11222211 111 22346678999999877 56677888899987762 12211 1
Q ss_pred ecCCCCCceeEEeeecCCEEEEEEeC
Q 003886 483 ITPAESNFSWSLLTLDGDNIIAVSSS 508 (789)
Q Consensus 483 lt~~~~~~~~~~~s~dg~~l~~~~ss 508 (789)
+-...+......++|.|+.|+....+
T Consensus 327 l~aag~~p~RL~lsP~g~~lA~s~gs 352 (420)
T KOG2096|consen 327 LHAAGSEPVRLELSPSGDSLAVSFGS 352 (420)
T ss_pred hhhcCCCceEEEeCCCCcEEEeecCC
Confidence 11122233345788888877655543
No 238
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=98.23 E-value=1.9e-06 Score=99.36 Aligned_cols=130 Identities=24% Similarity=0.294 Sum_probs=89.5
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCch-hh--HHHHHHHHHCCcEEEEEcCC-CCCCCCchhhccCCCC
Q 003886 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SY--SKSLAFLSSVGYSLLIVNYR-GSLGFGEEALQSLPGK 646 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-~~--~~~~~~la~~Gy~V~~~d~r-Gs~G~G~~~~~~~~~~ 646 (789)
.|. |...++.|......+ .|++|++|||....... .+ ......+..+..+|+.++|| |.-|+........+++
T Consensus 94 EDC--LylNV~tp~~~~~~~-~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRLG~lGF~st~d~~~~gN 170 (545)
T KOG1516|consen 94 EDC--LYLNVYTPQGCSESK-LPVMVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRLGPLGFLSTGDSAAPGN 170 (545)
T ss_pred CCC--ceEEEeccCCCccCC-CCEEEEEeCCceeeccccchhhcCchhccccCCEEEEEecccceeceeeecCCCCCCCc
Confidence 355 444578886432222 99999999987643332 22 12233455668999999999 7666654443333555
Q ss_pred CCcccHHHHHHHHHHHHHc---CCCCCccEEEEEcCccHHHHHHHHHh--CCCceeEEEEeCCcc
Q 003886 647 VGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLC 706 (789)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~~~~--~p~~~~a~v~~~pv~ 706 (789)
+| +.|+..+++|+.+. -.-|+++|.|+|||.||..+..++.. ...+|+.+|..++..
T Consensus 171 ~g---l~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~~ 232 (545)
T KOG1516|consen 171 LG---LFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGNA 232 (545)
T ss_pred cc---HHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhcccc
Confidence 55 67999999999885 22599999999999999999877763 124788888877753
No 239
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=98.21 E-value=3e-06 Score=84.37 Aligned_cols=153 Identities=17% Similarity=0.148 Sum_probs=73.3
Q ss_pred CCcEEEEEcCCCCCCCchhhHHH----HHHHHHCCcEEEEEcCCCC----CCCCch-------hhcc-CCCCCCc-----
Q 003886 591 CDPLIVVLHGGPHSVSLSSYSKS----LAFLSSVGYSLLIVNYRGS----LGFGEE-------ALQS-LPGKVGS----- 649 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~----~~~la~~Gy~V~~~d~rGs----~G~G~~-------~~~~-~~~~~~~----- 649 (789)
+++-|+.+||...+ ...|... ...|.+.++..+.+|-+-. .|.... .... ....|..
T Consensus 3 ~k~riLcLHG~~~n--a~if~~q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~ 80 (212)
T PF03959_consen 3 RKPRILCLHGYGQN--AEIFRQQTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDDD 80 (212)
T ss_dssp ---EEEEE--TT----HHHHHHHTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S-S
T ss_pred CCceEEEeCCCCcC--HHHHHHHHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCCc
Confidence 46789999996553 5555443 3344444799999986511 111100 1111 1112221
Q ss_pred ccHHHHHHHHHHHHH----cCCCCCccEEEEEcCccHHHHHHHHHhC--------CCceeEEEEeCCccchhhhhcCCCC
Q 003886 650 QDVNDVLTAIDHVID----MGLANPSKVTVVGGSHGGFLTTHLIGQA--------PDKFVAAAARNPLCNLALMVGTTDI 717 (789)
Q Consensus 650 ~~~~D~~~~i~~l~~----~~~~d~~rv~l~G~S~GG~~a~~~~~~~--------p~~~~a~v~~~pv~~~~~~~~~~~~ 717 (789)
....++.++++++.+ .+-+ .+|+|+|.||.+++.++... ...||.+|+.+++......
T Consensus 81 ~~~~~~~~sl~~l~~~i~~~GPf----dGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~~~~------ 150 (212)
T PF03959_consen 81 HEYEGLDESLDYLRDYIEENGPF----DGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPPDPD------ 150 (212)
T ss_dssp GGG---HHHHHHHHHHHHHH-------SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----EEE-------
T ss_pred ccccCHHHHHHHHHHHHHhcCCe----EEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCCchh------
Confidence 124455555555544 3323 59999999999999888532 1258999998886531100
Q ss_pred CcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 718 PDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
........+|++|+|.++|.+|..++++.+..|++.+.
T Consensus 151 -------------------------------~~~~~~~~~i~iPtlHv~G~~D~~~~~~~s~~L~~~~~ 188 (212)
T PF03959_consen 151 -------------------------------YQELYDEPKISIPTLHVIGENDPVVPPERSEALAEMFD 188 (212)
T ss_dssp -------------------------------GTTTT--TT---EEEEEEETT-SSS-HHHHHHHHHHHH
T ss_pred -------------------------------hhhhhccccCCCCeEEEEeCCCCCcchHHHHHHHHhcc
Confidence 00001234678999999999999999999999887653
No 240
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.19 E-value=0.00016 Score=81.38 Aligned_cols=154 Identities=15% Similarity=0.192 Sum_probs=99.5
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~ 234 (789)
+...+++-+|+++|+.++.. .+-.+. .++..++.+. ++.+.| ..++++|.|+.||.++-+
T Consensus 99 ~r~~~v~g~g~~iaagsdD~----~vK~~~~~D~s~~~~lr---gh~apV------l~l~~~p~~~fLAvss~d------ 159 (933)
T KOG1274|consen 99 IRDLAVSGSGKMIAAGSDDT----AVKLLNLDDSSQEKVLR---GHDAPV------LQLSYDPKGNFLAVSSCD------ 159 (933)
T ss_pred ceEEEEecCCcEEEeecCce----eEEEEeccccchheeec---ccCCce------eeeeEcCCCCEEEEEecC------
Confidence 56788999999999987654 244444 3333333333 222222 899999999999987543
Q ss_pred CccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEe-ccCCCCC------CccceEEEeeCCC
Q 003886 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQA-VKGIPKS------LSVGQVVWAPLNE 307 (789)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~-l~~~~~~------~~~~~~~wSPDg~ 307 (789)
..|.+||++++.+.. ++++... -.+..++|+|+|.
T Consensus 160 --------------------------------------G~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g 201 (933)
T KOG1274|consen 160 --------------------------------------GKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGG 201 (933)
T ss_pred --------------------------------------ceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCC
Confidence 578999999886533 2222222 2456899999988
Q ss_pred CCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCe-eecCC-CCC-ccCcceecCCCC
Q 003886 308 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTE-SIS-SAFFPRFSPDGK 384 (789)
Q Consensus 308 ~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~Lt~-~~~-~~~~p~~SpDG~ 384 (789)
. +++..-++ .|..++. ++.+. -.|.. ... .....+|||.|+
T Consensus 202 ~----la~~~~d~---------------~Vkvy~r-----------------~~we~~f~Lr~~~~ss~~~~~~wsPnG~ 245 (933)
T KOG1274|consen 202 T----LAVPPVDN---------------TVKVYSR-----------------KGWELQFKLRDKLSSSKFSDLQWSPNGK 245 (933)
T ss_pred e----EEeeccCC---------------eEEEEcc-----------------CCceeheeecccccccceEEEEEcCCCc
Confidence 8 88876332 3555554 22222 12221 111 256789999999
Q ss_pred EEEEEecCCCCCCCCccccceeEEeecCC
Q 003886 385 FLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (789)
Q Consensus 385 ~la~~s~~~~~~~g~~~~~~~L~~~d~~~ 413 (789)
+||-...+. +|.+||+++
T Consensus 246 YiAAs~~~g-----------~I~vWnv~t 263 (933)
T KOG1274|consen 246 YIAASTLDG-----------QILVWNVDT 263 (933)
T ss_pred EEeeeccCC-----------cEEEEeccc
Confidence 999777553 699999986
No 241
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=98.18 E-value=4.2e-05 Score=75.98 Aligned_cols=55 Identities=18% Similarity=0.242 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHc-CCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 652 VNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 652 ~~D~~~~i~~l~~~-~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
.+.+..-+.-.+++ --++.+|.+|+|||+||.+++.++..+|+.|.+.++.+|..
T Consensus 117 ~~fL~~~lkP~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSl 172 (264)
T COG2819 117 REFLTEQLKPFIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSL 172 (264)
T ss_pred HHHHHHhhHHHHhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeeecchh
Confidence 34555566666665 44899999999999999999999999999999999999965
No 242
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.18 E-value=3.2e-05 Score=86.31 Aligned_cols=93 Identities=11% Similarity=0.092 Sum_probs=63.0
Q ss_pred ccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCc-ccccCCccCceEEEEEccCCceEec
Q 003886 210 FEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDW-GETYAGKRQPSLFVININSGEVQAV 288 (789)
Q Consensus 210 ~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-g~~~~~~~~~~l~v~d~~~g~~~~l 288 (789)
+.+++||.++ .|+-++.+++.+ .|....+... ..-.+..++....|.|-- ..-+.|.-+..|.+|++...++...
T Consensus 372 ILDlSWSKn~-fLLSSSMDKTVR--LWh~~~~~CL-~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W 447 (712)
T KOG0283|consen 372 ILDLSWSKNN-FLLSSSMDKTVR--LWHPGRKECL-KVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDW 447 (712)
T ss_pred heecccccCC-eeEeccccccEE--eecCCCccee-eEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEee
Confidence 3578999886 677888888765 4554332222 233566777777776642 2223455567899999988887766
Q ss_pred cCCCCCCccceEEEeeCCCC
Q 003886 289 KGIPKSLSVGQVVWAPLNEG 308 (789)
Q Consensus 289 ~~~~~~~~~~~~~wSPDg~~ 308 (789)
..-...+..++++|||+.
T Consensus 448 --~Dl~~lITAvcy~PdGk~ 465 (712)
T KOG0283|consen 448 --NDLRDLITAVCYSPDGKG 465 (712)
T ss_pred --hhhhhhheeEEeccCCce
Confidence 344457889999999997
No 243
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.17 E-value=0.00079 Score=70.27 Aligned_cols=189 Identities=18% Similarity=0.156 Sum_probs=95.7
Q ss_pred EEEEEccCCce-EeccCCCC---CCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhh
Q 003886 275 LFVININSGEV-QAVKGIPK---SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (789)
Q Consensus 275 l~v~d~~~g~~-~~l~~~~~---~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (789)
+++++++.+.. +.+..... ..........|||+ ++|....... .+... ......||+++.
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~-----~wfgt~~~~~--~~~~~-~~~~G~lyr~~p-------- 150 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR-----IWFGDMGYFD--LGKSE-ERPTGSLYRVDP-------- 150 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC-----EEEeCCCccc--cCccc-cCCcceEEEEcC--------
Confidence 44555555544 33321111 12456778899987 7887654100 00000 012236999996
Q ss_pred hhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeee
Q 003886 351 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 430 (789)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~ 430 (789)
.++..+.+..+.......+|||||+.|+++-... ..||+++++.... .+... ...+
T Consensus 151 ---------~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~----------~~i~r~~~d~~~g-~~~~~----~~~~ 206 (307)
T COG3386 151 ---------DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA----------NRIHRYDLDPATG-PIGGR----RGFV 206 (307)
T ss_pred ---------CCCEEEeecCcEEecCceEECCCCCEEEEEeCCC----------CeEEEEecCcccC-ccCCc----ceEE
Confidence 5556666666566678899999999887776442 5799998874111 11111 1111
Q ss_pred eccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEe-eecCCEEEEEEeCC
Q 003886 431 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLL-TLDGDNIIAVSSSP 509 (789)
Q Consensus 431 ~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~-s~dg~~l~~~~ss~ 509 (789)
.+.. .+| ..-..+...||. |+..+.+++ ..|.+++.++..+..+.-.....+...| .++.+.|+.+....
T Consensus 207 ~~~~---~~G----~PDG~~vDadG~-lw~~a~~~g-~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 207 DFDE---EPG----LPDGMAVDADGN-LWVAAVWGG-GRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred EccC---CCC----CCCceEEeCCCC-EEEecccCC-ceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 1111 111 122444555665 443333332 3566677763344444333121222222 34557777776665
Q ss_pred CCC
Q 003886 510 VDV 512 (789)
Q Consensus 510 ~~p 512 (789)
..+
T Consensus 278 ~~~ 280 (307)
T COG3386 278 GMS 280 (307)
T ss_pred CCC
Confidence 554
No 244
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.16 E-value=8e-05 Score=80.43 Aligned_cols=196 Identities=17% Similarity=0.202 Sum_probs=107.5
Q ss_pred eEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCC
Q 003886 167 KLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGS 245 (789)
Q Consensus 167 ~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~ 245 (789)
.|.++.+++ ..++..++ ...+....+......| ..+.+||||++++.. ..
T Consensus 6 ~l~~V~~~~--~~~v~viD~~t~~~~~~i~~~~~~h---------~~~~~s~Dgr~~yv~-~r----------------- 56 (369)
T PF02239_consen 6 NLFYVVERG--SGSVAVIDGATNKVVARIPTGGAPH---------AGLKFSPDGRYLYVA-NR----------------- 56 (369)
T ss_dssp GEEEEEEGG--GTEEEEEETTT-SEEEEEE-STTEE---------EEEE-TT-SSEEEEE-ET-----------------
T ss_pred cEEEEEecC--CCEEEEEECCCCeEEEEEcCCCCce---------eEEEecCCCCEEEEE-cC-----------------
Confidence 355555443 23577777 4556666666544444 567899999986554 32
Q ss_pred CCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceee
Q 003886 246 SDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKL 325 (789)
Q Consensus 246 ~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~ 325 (789)
+..|-++|+.++++..- +........+++||||++ + ++++..
T Consensus 57 --------------------------dg~vsviD~~~~~~v~~--i~~G~~~~~i~~s~DG~~----~-~v~n~~----- 98 (369)
T PF02239_consen 57 --------------------------DGTVSVIDLATGKVVAT--IKVGGNPRGIAVSPDGKY----V-YVANYE----- 98 (369)
T ss_dssp --------------------------TSEEEEEETTSSSEEEE--EE-SSEEEEEEE--TTTE----E-EEEEEE-----
T ss_pred --------------------------CCeEEEEECCcccEEEE--EecCCCcceEEEcCCCCE----E-EEEecC-----
Confidence 25689999999886543 344455678999999996 5 555321
Q ss_pred eeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCe-eecCCC-------CCccCcceecCCCCEEEEEecCCCCCC
Q 003886 326 GIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTES-------ISSAFFPRFSPDGKFLVFLSAKSSVDS 397 (789)
Q Consensus 326 g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~Lt~~-------~~~~~~p~~SpDG~~la~~s~~~~~~~ 397 (789)
+..+.++|. ++.+. +.+... ........-||++..+++.-.+
T Consensus 99 --------~~~v~v~D~-----------------~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd----- 148 (369)
T PF02239_consen 99 --------PGTVSVIDA-----------------ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD----- 148 (369)
T ss_dssp --------TTEEEEEET-----------------TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT-----
T ss_pred --------CCceeEecc-----------------ccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc-----
Confidence 236888886 44433 333221 1112344567888866665543
Q ss_pred CCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCC
Q 003886 398 GAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSS 477 (789)
Q Consensus 398 g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~t 477 (789)
..+++++|......... ..+.+ +.+ +....|+||+++++....... .+-.+|..+
T Consensus 149 -----~~~I~vVdy~d~~~~~~-----~~i~~------g~~-------~~D~~~dpdgry~~va~~~sn--~i~viD~~~ 203 (369)
T PF02239_consen 149 -----TGEIWVVDYSDPKNLKV-----TTIKV------GRF-------PHDGGFDPDGRYFLVAANGSN--KIAVIDTKT 203 (369)
T ss_dssp -----TTEEEEEETTTSSCEEE-----EEEE--------TT-------EEEEEE-TTSSEEEEEEGGGT--EEEEEETTT
T ss_pred -----CCeEEEEEeccccccce-----eeecc------ccc-------ccccccCcccceeeecccccc--eeEEEeecc
Confidence 24799999765322100 01111 112 124579999998876544333 677888888
Q ss_pred CcEEEec
Q 003886 478 GELLRIT 484 (789)
Q Consensus 478 g~~~~lt 484 (789)
++...+.
T Consensus 204 ~k~v~~i 210 (369)
T PF02239_consen 204 GKLVALI 210 (369)
T ss_dssp TEEEEEE
T ss_pred ceEEEEe
Confidence 8776654
No 245
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.16 E-value=0.0017 Score=67.12 Aligned_cols=264 Identities=14% Similarity=0.142 Sum_probs=139.3
Q ss_pred cEEEEeCCCCCeEEEEec-----CCCCCCeEEEEecCC--ceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeec
Q 003886 156 ASAVVPSPSGSKLLVVRN-----PENESPIQFELWSQS--QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 228 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~-----~~~~~~~~~~i~~~~--~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~ 228 (789)
...+..||||+.++.... ..+....+.++|+.. ....++.++...+--+ -.....+..|.|||++++.-.-
T Consensus 38 ~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~--~~~~~~~~ls~dgk~~~V~N~T 115 (342)
T PF06433_consen 38 LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV--VPYKNMFALSADGKFLYVQNFT 115 (342)
T ss_dssp SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B--S--GGGEEE-TTSSEEEEEEES
T ss_pred CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee--cccccceEEccCCcEEEEEccC
Confidence 456789999999986531 122456788888544 4456666665411000 0012467899999988764322
Q ss_pred CCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCC
Q 003886 229 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 308 (789)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~ 308 (789)
.-..+-|+|++.+++... ++-..+..-+ |-|+.
T Consensus 116 ------------------------------------------Pa~SVtVVDl~~~kvv~e--i~~PGC~~iy---P~~~~ 148 (342)
T PF06433_consen 116 ------------------------------------------PATSVTVVDLAAKKVVGE--IDTPGCWLIY---PSGNR 148 (342)
T ss_dssp ------------------------------------------SSEEEEEEETTTTEEEEE--EEGTSEEEEE---EEETT
T ss_pred ------------------------------------------CCCeEEEEECCCCceeee--ecCCCEEEEE---ecCCC
Confidence 236899999999987654 2323222222 22222
Q ss_pred CccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCe-eecCC---C--CCccCcceecCC
Q 003886 309 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTE---S--ISSAFFPRFSPD 382 (789)
Q Consensus 309 ~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~Lt~---~--~~~~~~p~~SpD 382 (789)
. +.-. | ++..+..+.++ +.|+. ++.+. . ..-...|.++.+
T Consensus 149 ~---F~~l-------------C--~DGsl~~v~Ld----------------~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~ 194 (342)
T PF06433_consen 149 G---FSML-------------C--GDGSLLTVTLD----------------ADGKEAQKSTKVFDPDDDPLFEHPAYSRD 194 (342)
T ss_dssp E---EEEE-------------E--TTSCEEEEEET----------------STSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred c---eEEE-------------e--cCCceEEEEEC----------------CCCCEeEeeccccCCCCcccccccceECC
Confidence 0 2212 3 23356666663 22222 22211 1 123457788888
Q ss_pred CCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeecc--CCCCCccccccCCCCCccccCCCEEEE
Q 003886 383 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCA--EGDCFPGLYSSSILSNPWLSDGCTMLL 460 (789)
Q Consensus 383 G~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~--~~~~f~g~~~~~~~~~~ws~Dg~~l~~ 460 (789)
+.+++|.+-.. .+|-.|+.+...+.. ....+.... .++-.|| +...+++.+..++||+
T Consensus 195 ~~~~~F~Sy~G-----------~v~~~dlsg~~~~~~-----~~~~~~t~~e~~~~WrPG----G~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 195 GGRLYFVSYEG-----------NVYSADLSGDSAKFG-----KPWSLLTDAEKADGWRPG----GWQLIAYHAASGRLYV 254 (342)
T ss_dssp TTEEEEEBTTS-----------EEEEEEETTSSEEEE-----EEEESS-HHHHHTTEEE-----SSS-EEEETTTTEEEE
T ss_pred CCeEEEEecCC-----------EEEEEeccCCccccc-----CcccccCccccccCcCCc----ceeeeeeccccCeEEE
Confidence 88899988653 689999877543211 111111111 1122343 2334567777778887
Q ss_pred EEEeC-------CeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeecccC
Q 003886 461 SSIWG-------SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 524 (789)
Q Consensus 461 ~~~~~-------~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~~ 524 (789)
.-..+ +...||.+|+++++..+-.+.........++.|.+-++|..+..+ ..|+++|..+++
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~--~~l~v~D~~tGk 323 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGD--GTLDVYDAATGK 323 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTT--TEEEEEETTT--
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCC--CeEEEEeCcCCc
Confidence 65432 357899999999876543332222223566777776666554422 348888876553
No 246
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=98.15 E-value=6.9e-05 Score=77.56 Aligned_cols=123 Identities=15% Similarity=0.134 Sum_probs=81.3
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhc-----cCCC-----
Q 003886 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQ-----SLPG----- 645 (789)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~-----~~~~----- 645 (789)
.+-.++.|+.- ..+.+|++|.+.|.+..............|++.|+..+.+..+= ||.--.. .+..
T Consensus 77 a~~~~~~P~~~-~~~~rp~~IhLagTGDh~f~rR~~l~a~pLl~~gi~s~~le~Py---yg~RkP~~Q~~s~l~~VsDl~ 152 (348)
T PF09752_consen 77 ARFQLLLPKRW-DSPYRPVCIHLAGTGDHGFWRRRRLMARPLLKEGIASLILENPY---YGQRKPKDQRRSSLRNVSDLF 152 (348)
T ss_pred eEEEEEECCcc-ccCCCceEEEecCCCccchhhhhhhhhhHHHHcCcceEEEeccc---ccccChhHhhcccccchhHHH
Confidence 34456678643 34568999999985543222222223567788899998888542 3331111 0100
Q ss_pred CCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 646 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 646 ~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
..|...+.+....++|+.++|+ .+++|.|.||||.+|..+++..|..+..+-+.++.
T Consensus 153 ~~g~~~i~E~~~Ll~Wl~~~G~---~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~~ 209 (348)
T PF09752_consen 153 VMGRATILESRALLHWLEREGY---GPLGLTGISMGGHMAALAASNWPRPVALVPCLSWS 209 (348)
T ss_pred HHHhHHHHHHHHHHHHHHhcCC---CceEEEEechhHhhHHhhhhcCCCceeEEEeeccc
Confidence 1234457788888999998863 58999999999999999999999877666555553
No 247
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=98.15 E-value=6.8e-06 Score=66.94 Aligned_cols=58 Identities=19% Similarity=0.305 Sum_probs=46.2
Q ss_pred CeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchh
Q 003886 573 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEA 639 (789)
Q Consensus 573 g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~ 639 (789)
|.+|....+.|++ . .+.+|+++||... ....|...++.|+++||.|+++|+|| +|.+.
T Consensus 1 G~~L~~~~w~p~~---~-~k~~v~i~HG~~e--h~~ry~~~a~~L~~~G~~V~~~D~rG---hG~S~ 58 (79)
T PF12146_consen 1 GTKLFYRRWKPEN---P-PKAVVVIVHGFGE--HSGRYAHLAEFLAEQGYAVFAYDHRG---HGRSE 58 (79)
T ss_pred CcEEEEEEecCCC---C-CCEEEEEeCCcHH--HHHHHHHHHHHHHhCCCEEEEECCCc---CCCCC
Confidence 4668888888862 2 7899999999654 34567788899999999999999998 55554
No 248
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.13 E-value=0.0003 Score=69.93 Aligned_cols=248 Identities=15% Similarity=0.127 Sum_probs=138.6
Q ss_pred CCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 003886 105 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 184 (789)
Q Consensus 105 spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i 184 (789)
|+-|..+|. +...+.+.++++.+-+ -.+-|+.+- ..+....||+||++|+..+... ...+
T Consensus 32 s~~G~~lAv---------Gc~nG~vvI~D~~T~~-iar~lsaH~-----~pi~sl~WS~dgr~LltsS~D~-----si~l 91 (405)
T KOG1273|consen 32 SRWGDYLAV---------GCANGRVVIYDFDTFR-IARMLSAHV-----RPITSLCWSRDGRKLLTSSRDW-----SIKL 91 (405)
T ss_pred ccCcceeee---------eccCCcEEEEEccccc-hhhhhhccc-----cceeEEEecCCCCEeeeecCCc-----eeEE
Confidence 366666655 3445567777764432 122333332 3477899999999999887765 4556
Q ss_pred e--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCC
Q 003886 185 W--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEED 262 (789)
Q Consensus 185 ~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 262 (789)
| ..|...+.+.++..+ ....|.|-.+..+.+.--.
T Consensus 92 wDl~~gs~l~rirf~spv----------~~~q~hp~k~n~~va~~~~--------------------------------- 128 (405)
T KOG1273|consen 92 WDLLKGSPLKRIRFDSPV----------WGAQWHPRKRNKCVATIME--------------------------------- 128 (405)
T ss_pred EeccCCCceeEEEccCcc----------ceeeeccccCCeEEEEEec---------------------------------
Confidence 6 356677777776655 7888999665555443221
Q ss_pred cccccCCccCceEEEEEccCCceEeccC-CCCC--CccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEE
Q 003886 263 WGETYAGKRQPSLFVININSGEVQAVKG-IPKS--LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 339 (789)
Q Consensus 263 ~g~~~~~~~~~~l~v~d~~~g~~~~l~~-~~~~--~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~ 339 (789)
..-+++++..++.+.|.. .+++ .......|.+-|+. | ++++.. ..|-.
T Consensus 129 ----------~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~y----I-itGtsK--------------Gkllv 179 (405)
T KOG1273|consen 129 ----------ESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKY----I-ITGTSK--------------GKLLV 179 (405)
T ss_pred ----------CCcEEEEecCCceeeccCCCccccccccccccccCCCCE----E-EEecCc--------------ceEEE
Confidence 112345554455454421 1111 12333468888886 4 455322 35777
Q ss_pred EecccccchhhhhhhhcCCCCCCCee---ecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCC---
Q 003886 340 VRVSLYKSEASELELKESSSEDLPVV---NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT--- 413 (789)
Q Consensus 340 ~d~~~~~~~~~~~~~~~~~~~~~~~~---~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~--- 413 (789)
+|. ++-++. ++|. ...+.+..+|-.|+.|++.+.+. -|..++...
T Consensus 180 ~~a-----------------~t~e~vas~rits-~~~IK~I~~s~~g~~liiNtsDR-----------vIR~ye~~di~~ 230 (405)
T KOG1273|consen 180 YDA-----------------ETLECVASFRITS-VQAIKQIIVSRKGRFLIINTSDR-----------VIRTYEISDIDD 230 (405)
T ss_pred Eec-----------------chheeeeeeeech-heeeeEEEEeccCcEEEEecCCc-----------eEEEEehhhhcc
Confidence 776 333322 2222 23467889999999998877554 255555431
Q ss_pred CCC-CCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCC
Q 003886 414 NGN-FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE 487 (789)
Q Consensus 414 ~~~-~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~ 487 (789)
.+. ..++.. ..+.++++.. .-...+||.||.++...+ ...-.||.+....|.+.++..+.
T Consensus 231 ~~r~~e~e~~-~K~qDvVNk~-----------~Wk~ccfs~dgeYv~a~s--~~aHaLYIWE~~~GsLVKILhG~ 291 (405)
T KOG1273|consen 231 EGRDGEVEPE-HKLQDVVNKL-----------QWKKCCFSGDGEYVCAGS--ARAHALYIWEKSIGSLVKILHGT 291 (405)
T ss_pred cCccCCcChh-HHHHHHHhhh-----------hhhheeecCCccEEEecc--ccceeEEEEecCCcceeeeecCC
Confidence 100 001100 0111111110 012457888998775544 34456899998899998887654
No 249
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.13 E-value=0.001 Score=68.03 Aligned_cols=185 Identities=16% Similarity=0.178 Sum_probs=109.9
Q ss_pred EEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCceeEEEecCC-CccccccCCCcccceeecCCCCEEEEEeecCCCCCC
Q 003886 157 SAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (789)
Q Consensus 157 ~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~-~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~ 234 (789)
..-+|||||++|+.+.+.-+....++-+|+ ....+++-+.+. ++ |. ..+.|.|||+.|+.. +......|
T Consensus 54 GHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GI-GP-------Hel~l~pDG~tLvVA-NGGI~Thp 124 (305)
T PF07433_consen 54 GHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGI-GP-------HELLLMPDGETLVVA-NGGIETHP 124 (305)
T ss_pred cCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCc-Ch-------hhEEEcCCCCEEEEE-cCCCccCc
Confidence 367899999998776655455667888883 334555555432 21 11 378899999888764 22211110
Q ss_pred CccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceE-eccCCC---CCCccceEEEeeCCCCCc
Q 003886 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ-AVKGIP---KSLSVGQVVWAPLNEGLH 310 (789)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~-~l~~~~---~~~~~~~~~wSPDg~~~~ 310 (789)
.. ++ .+......++.|..+|..+|++. +.. .+ ...++..+++.+||.
T Consensus 125 d~-------GR------------------~kLNl~tM~psL~~ld~~sG~ll~q~~-Lp~~~~~lSiRHLa~~~~G~--- 175 (305)
T PF07433_consen 125 DS-------GR------------------AKLNLDTMQPSLVYLDARSGALLEQVE-LPPDLHQLSIRHLAVDGDGT--- 175 (305)
T ss_pred cc-------Cc------------------eecChhhcCCceEEEecCCCceeeeee-cCccccccceeeEEecCCCc---
Confidence 00 00 01122335689999999999853 322 22 235788999999987
Q ss_pred cEEEEEe-ecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeec-------CCCCCccCcceecCC
Q 003886 311 QYLVFVG-WSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-------TESISSAFFPRFSPD 382 (789)
Q Consensus 311 ~~l~f~~-~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L-------t~~~~~~~~p~~SpD 382 (789)
++|.. ++.++. ....-|...+. +...+.+ ..-.+++.+.++++|
T Consensus 176 --V~~a~Q~qg~~~--------~~~PLva~~~~------------------g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~ 227 (305)
T PF07433_consen 176 --VAFAMQYQGDPG--------DAPPLVALHRR------------------GGALRLLPAPEEQWRRLNGYIGSIAADRD 227 (305)
T ss_pred --EEEEEecCCCCC--------ccCCeEEEEcC------------------CCcceeccCChHHHHhhCCceEEEEEeCC
Confidence 55543 333321 01122333332 1112222 122467889999999
Q ss_pred CCEEEEEecCCCCCCCCccccceeEEeecCCCCCC
Q 003886 383 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 417 (789)
Q Consensus 383 G~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~ 417 (789)
|..++.++.+. ..+.+||..++...
T Consensus 228 g~~ia~tsPrG----------g~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 228 GRLIAVTSPRG----------GRVAVWDAATGRLL 252 (305)
T ss_pred CCEEEEECCCC----------CEEEEEECCCCCEe
Confidence 99999888775 35788898886653
No 250
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=98.12 E-value=9.4e-05 Score=71.06 Aligned_cols=179 Identities=15% Similarity=0.177 Sum_probs=117.5
Q ss_pred ceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--c
Q 003886 109 TQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--S 186 (789)
Q Consensus 109 ~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~ 186 (789)
+.++|+.+...+..+...+-|.++++......+..+..++ +++....|.-..+.|+-..+.. -.++| .
T Consensus 104 k~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ght-----g~Ir~v~wc~eD~~iLSSadd~-----tVRLWD~r 173 (334)
T KOG0278|consen 104 KAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHT-----GGIRTVLWCHEDKCILSSADDK-----TVRLWDHR 173 (334)
T ss_pred eeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCC-----CcceeEEEeccCceEEeeccCC-----ceEEEEec
Confidence 3577877777777777788888888766655555555555 6788888988888887654332 35666 4
Q ss_pred CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccc
Q 003886 187 QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGET 266 (789)
Q Consensus 187 ~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~ 266 (789)
.+...+.+++...+ .++..|+||+.|..+ .
T Consensus 174 Tgt~v~sL~~~s~V----------tSlEvs~dG~ilTia-~--------------------------------------- 203 (334)
T KOG0278|consen 174 TGTEVQSLEFNSPV----------TSLEVSQDGRILTIA-Y--------------------------------------- 203 (334)
T ss_pred cCcEEEEEecCCCC----------cceeeccCCCEEEEe-c---------------------------------------
Confidence 66667777776666 789999999866442 1
Q ss_pred cCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEeccccc
Q 003886 267 YAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 346 (789)
Q Consensus 267 ~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 346 (789)
...|-.||..+-++..- ..-...+.+...+|+-. ++..+. ....+|.+|.
T Consensus 204 -----gssV~Fwdaksf~~lKs--~k~P~nV~SASL~P~k~-----~fVaGg--------------ed~~~~kfDy---- 253 (334)
T KOG0278|consen 204 -----GSSVKFWDAKSFGLLKS--YKMPCNVESASLHPKKE-----FFVAGG--------------EDFKVYKFDY---- 253 (334)
T ss_pred -----CceeEEeccccccceee--ccCccccccccccCCCc-----eEEecC--------------cceEEEEEec----
Confidence 13455677665433222 22344567888999874 444442 2336888887
Q ss_pred chhhhhhhhcCCCCCCCeeec--CCCCCccCcceecCCCCEEEEEe
Q 003886 347 SEASELELKESSSEDLPVVNL--TESISSAFFPRFSPDGKFLVFLS 390 (789)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~L--t~~~~~~~~p~~SpDG~~la~~s 390 (789)
.+++..-+ ..+.+.+...+|||||..-+.-|
T Consensus 254 -------------~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGS 286 (334)
T KOG0278|consen 254 -------------NTGEEIGSYNKGHFGPVHCVRFSPDGELYASGS 286 (334)
T ss_pred -------------cCCceeeecccCCCCceEEEEECCCCceeeccC
Confidence 56655444 45567788999999998444333
No 251
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=98.11 E-value=2.2e-05 Score=82.48 Aligned_cols=120 Identities=20% Similarity=0.314 Sum_probs=80.1
Q ss_pred EEEEEe-cCCCCCCCCCcEEEEEcCCCCCCCch--hhH--HHHHHHHHCCcEEEEEcCCCCC--CCCchhhccCCCCCCc
Q 003886 577 EAIFVS-SSHKKDCSCDPLIVVLHGGPHSVSLS--SYS--KSLAFLSSVGYSLLIVNYRGSL--GFGEEALQSLPGKVGS 649 (789)
Q Consensus 577 ~~~~~~-P~~~~~~~~~P~vv~~HGg~~~~~~~--~~~--~~~~~la~~Gy~V~~~d~rGs~--G~G~~~~~~~~~~~~~ 649 (789)
.-|++. |..++ .+..|+||++|||+...... +.. .....+.. ...+++.||.-.. .+|. .-.
T Consensus 107 s~Wlvk~P~~~~-pk~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l~-~~SILvLDYsLt~~~~~~~---------~yP 175 (374)
T PF10340_consen 107 SYWLVKAPNRFK-PKSDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLLP-EVSILVLDYSLTSSDEHGH---------KYP 175 (374)
T ss_pred eEEEEeCCcccC-CCCCcEEEEEcCCeeEecCCHHHHHHHHHHHHHcC-CCeEEEEeccccccccCCC---------cCc
Confidence 357777 76433 33459999999988754322 111 11222223 5699999997532 1222 223
Q ss_pred ccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhC--C---CceeEEEEeCCccchh
Q 003886 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA--P---DKFVAAAARNPLCNLA 709 (789)
Q Consensus 650 ~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~--p---~~~~a~v~~~pv~~~~ 709 (789)
..+.++.+..++|++.. ..++|.+||-|+||.+++.++... + ..-+.+|+++|.+++.
T Consensus 176 tQL~qlv~~Y~~Lv~~~--G~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~ 238 (374)
T PF10340_consen 176 TQLRQLVATYDYLVESE--GNKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLV 238 (374)
T ss_pred hHHHHHHHHHHHHHhcc--CCCeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCc
Confidence 44789999999999542 357899999999999999876531 1 2357999999988875
No 252
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=0.00045 Score=68.93 Aligned_cols=238 Identities=11% Similarity=0.074 Sum_probs=124.5
Q ss_pred CCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEE
Q 003886 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 183 (789)
Q Consensus 104 ~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 183 (789)
.++||..++-. ++.| .+.+++. ..+.....+.... .++....|--....+.+.++..+. .+..
T Consensus 22 fs~~G~~lits-s~dD--------sl~LYd~-~~g~~~~ti~skk-----yG~~~~~Fth~~~~~i~sStk~d~--tIry 84 (311)
T KOG1446|consen 22 FSDDGLLLITS-SEDD--------SLRLYDS-LSGKQVKTINSKK-----YGVDLACFTHHSNTVIHSSTKEDD--TIRY 84 (311)
T ss_pred ecCCCCEEEEe-cCCC--------eEEEEEc-CCCceeeEeeccc-----ccccEEEEecCCceEEEccCCCCC--ceEE
Confidence 46888777552 3322 5566664 2333333333333 245555555555566666654332 3333
Q ss_pred Ee-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCC
Q 003886 184 LW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEED 262 (789)
Q Consensus 184 i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 262 (789)
+. .+.+-.+-+. +.+..| ..++-||-+...+..+.++..+ .|+....+..-.. ...-..-..|+|.
T Consensus 85 Lsl~dNkylRYF~---GH~~~V------~sL~~sP~~d~FlS~S~D~tvr--LWDlR~~~cqg~l--~~~~~pi~AfDp~ 151 (311)
T KOG1446|consen 85 LSLHDNKYLRYFP---GHKKRV------NSLSVSPKDDTFLSSSLDKTVR--LWDLRVKKCQGLL--NLSGRPIAAFDPE 151 (311)
T ss_pred EEeecCceEEEcC---CCCceE------EEEEecCCCCeEEecccCCeEE--eeEecCCCCceEE--ecCCCcceeECCC
Confidence 33 2333333332 222222 7889999888887777776544 4443211111000 0001112245555
Q ss_pred cccccCCccCceEEEEEccC---CceEecc-CCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceE
Q 003886 263 WGETYAGKRQPSLFVININS---GEVQAVK-GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 338 (789)
Q Consensus 263 ~g~~~~~~~~~~l~v~d~~~---g~~~~l~-~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~ 338 (789)
+=-...+.+...|.++|+.. |..+... +.+.......+.||||||. |+... +.+.+|
T Consensus 152 GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~----iLlsT---------------~~s~~~ 212 (311)
T KOG1446|consen 152 GLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKS----ILLST---------------NASFIY 212 (311)
T ss_pred CcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCE----EEEEe---------------CCCcEE
Confidence 31111222334777777653 3222221 1123445678999999998 88776 344789
Q ss_pred EEecccccchhhhhhhhcCCCCCCCeeecCCC---CCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCC
Q 003886 339 AVRVSLYKSEASELELKESSSEDLPVVNLTES---ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (789)
Q Consensus 339 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~---~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~ 415 (789)
++|.- .+.....++.. ........|+|||+.++-.+.++ +|++|+++++.
T Consensus 213 ~lDAf----------------~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg-----------~i~vw~~~tg~ 265 (311)
T KOG1446|consen 213 LLDAF----------------DGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDG-----------TIHVWNLETGK 265 (311)
T ss_pred EEEcc----------------CCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCC-----------cEEEEEcCCCc
Confidence 99973 22222233222 22235789999999876555443 69999998876
Q ss_pred CC
Q 003886 416 NF 417 (789)
Q Consensus 416 ~~ 417 (789)
+.
T Consensus 266 ~v 267 (311)
T KOG1446|consen 266 KV 267 (311)
T ss_pred Ee
Confidence 64
No 253
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.08 E-value=0.0012 Score=67.51 Aligned_cols=239 Identities=15% Similarity=0.167 Sum_probs=131.7
Q ss_pred ccEEEEeCC-CCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 155 GASAVVPSP-SGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 155 ~~~~~~~SP-dG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
..-.++.+| ++.-++|.+..+ ...++++ .+++..+.+..+.+.| -+..-.|||||++|+ +.|.+..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG---~~~~v~D~~~g~~~~~~~a~~gRH-------FyGHg~fs~dG~~Ly-tTEnd~~- 73 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPG---TFALVFDCRTGQLLQRLWAPPGRH-------FYGHGVFSPDGRLLY-TTENDYE- 73 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCC---cEEEEEEcCCCceeeEEcCCCCCE-------EecCEEEcCCCCEEE-EeccccC-
Confidence 344678999 666677776654 2344555 5676666665554443 124678999999664 5444311
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCC-CCCCccceEEEeeCCCCCcc
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGI-PKSLSVGQVVWAPLNEGLHQ 311 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~-~~~~~~~~~~wSPDg~~~~~ 311 (789)
..+..|-|+|... ..+++... ...+...++.|.|||+.
T Consensus 74 -------------------------------------~g~G~IgVyd~~~-~~~ri~E~~s~GIGPHel~l~pDG~t--- 112 (305)
T PF07433_consen 74 -------------------------------------TGRGVIGVYDAAR-GYRRIGEFPSHGIGPHELLLMPDGET--- 112 (305)
T ss_pred -------------------------------------CCcEEEEEEECcC-CcEEEeEecCCCcChhhEEEcCCCCE---
Confidence 1567899999983 33333212 23456678999999987
Q ss_pred EEEEEeecCC-----ceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eee--cCC--CCCccCcceecC
Q 003886 312 YLVFVGWSSE-----TRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVN--LTE--SISSAFFPRFSP 381 (789)
Q Consensus 312 ~l~f~~~~~~-----~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~--Lt~--~~~~~~~p~~Sp 381 (789)
|+.. |-.- ..|.-++.. .-...|.++|. .+|+ ..+ |.. +.-++...++.+
T Consensus 113 -LvVA-NGGI~Thpd~GR~kLNl~-tM~psL~~ld~-----------------~sG~ll~q~~Lp~~~~~lSiRHLa~~~ 172 (305)
T PF07433_consen 113 -LVVA-NGGIETHPDSGRAKLNLD-TMQPSLVYLDA-----------------RSGALLEQVELPPDLHQLSIRHLAVDG 172 (305)
T ss_pred -EEEE-cCCCccCcccCceecChh-hcCCceEEEec-----------------CCCceeeeeecCccccccceeeEEecC
Confidence 6653 3211 111111111 12235777876 4554 333 533 345789999999
Q ss_pred CCCEEEEEecCCCCCCCCccccc-eeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEE
Q 003886 382 DGKFLVFLSAKSSVDSGAHSATD-SLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLL 460 (789)
Q Consensus 382 DG~~la~~s~~~~~~~g~~~~~~-~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~ 460 (789)
||.- +|...-. |+..... -|.+.+ .++...+.....+. ...+.+ | +.++++++||+.+.+
T Consensus 173 ~G~V-~~a~Q~q----g~~~~~~PLva~~~--~g~~~~~~~~p~~~--------~~~l~~-Y---~gSIa~~~~g~~ia~ 233 (305)
T PF07433_consen 173 DGTV-AFAMQYQ----GDPGDAPPLVALHR--RGGALRLLPAPEEQ--------WRRLNG-Y---IGSIAADRDGRLIAV 233 (305)
T ss_pred CCcE-EEEEecC----CCCCccCCeEEEEc--CCCcceeccCChHH--------HHhhCC-c---eEEEEEeCCCCEEEE
Confidence 9973 3443322 2211221 233332 22221111100000 001221 2 346789999998888
Q ss_pred EEEeCCeEEEEEEECCCCcEEEecCCC
Q 003886 461 SSIWGSSQVIISVNVSSGELLRITPAE 487 (789)
Q Consensus 461 ~~~~~~~~~l~~~dl~tg~~~~lt~~~ 487 (789)
++-.++...+| |..+|++.....-.
T Consensus 234 tsPrGg~~~~~--d~~tg~~~~~~~l~ 258 (305)
T PF07433_consen 234 TSPRGGRVAVW--DAATGRLLGSVPLP 258 (305)
T ss_pred ECCCCCEEEEE--ECCCCCEeeccccC
Confidence 87777766665 88899988766554
No 254
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.0001 Score=76.14 Aligned_cols=210 Identities=15% Similarity=0.139 Sum_probs=114.8
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
+.....++++||..|+....++ .+++|+=-....+.+. ...|+.| .++.|||||+.|+++..
T Consensus 145 g~~k~vaf~~~gs~latgg~dg-----~lRv~~~Ps~~t~l~e-~~~~~eV------~DL~FS~dgk~lasig~------ 206 (398)
T KOG0771|consen 145 GQQKVVAFNGDGSKLATGGTDG-----TLRVWEWPSMLTILEE-IAHHAEV------KDLDFSPDGKFLASIGA------ 206 (398)
T ss_pred CcceEEEEcCCCCEeeeccccc-----eEEEEecCcchhhhhh-HhhcCcc------ccceeCCCCcEEEEecC------
Confidence 3456789999999999865443 5667641112222221 1234444 89999999999999743
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCce-EeccCCCCCCccceEEEeeCCCCCccE
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-QAVKGIPKSLSVGQVVWAPLNEGLHQY 312 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~-~~l~~~~~~~~~~~~~wSPDg~~~~~~ 312 (789)
....||++++|-. ...++...+.....-.|+-|+.+ .-+
T Consensus 207 ---------------------------------------d~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~-~~l 246 (398)
T KOG0771|consen 207 ---------------------------------------DSARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQ-ETL 246 (398)
T ss_pred ---------------------------------------CceEEEEeccCchhhhcCCcccchhhhhceecccCCC-ceE
Confidence 3577899888843 33322233445667788888743 111
Q ss_pred EEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecC
Q 003886 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (789)
Q Consensus 313 l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~ 392 (789)
.++....... .|-.+++..+. . . +-...++.......+.+...|+||+.+|..+++
T Consensus 247 ~laa~~~~~~-------------~v~~~~~~~w~-~---------~-~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 247 RLAASQFPGG-------------GVRLCDISLWS-G---------S-NFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred EEEEecCCCC-------------ceeEEEeeeec-c---------c-cccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence 3333211111 22223321000 0 0 112334444445568899999999999998875
Q ss_pred CCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003886 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (789)
Q Consensus 393 ~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (789)
. .+-+++..+=+..+..... +...+..+.|+||.+++.= .+.+.+..+..
T Consensus 303 G-----------sVai~~~~~lq~~~~vk~a------------------H~~~VT~ltF~Pdsr~~~s-vSs~~~~~v~~ 352 (398)
T KOG0771|consen 303 G-----------SVAIYDAKSLQRLQYVKEA------------------HLGFVTGLTFSPDSRYLAS-VSSDNEAAVTK 352 (398)
T ss_pred C-----------cEEEEEeceeeeeEeehhh------------------heeeeeeEEEcCCcCcccc-cccCCceeEEE
Confidence 4 3566664432211111111 1123456778999886643 33344445555
Q ss_pred EEC
Q 003886 473 VNV 475 (789)
Q Consensus 473 ~dl 475 (789)
+..
T Consensus 353 l~v 355 (398)
T KOG0771|consen 353 LAV 355 (398)
T ss_pred Eee
Confidence 443
No 255
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=97.99 E-value=0.00041 Score=73.33 Aligned_cols=167 Identities=16% Similarity=0.141 Sum_probs=90.8
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEec-C-CCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHV-P-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~-~-~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
...-.|.|+.+....... .++.-.+|.+.......+++.. + ++..-. .....|+|||++||-...+.
T Consensus 271 lt~g~whP~~k~~FlT~s-~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~------~tsC~~nrdg~~iAagc~DG---- 339 (641)
T KOG0772|consen 271 LTCGCWHPDNKEEFLTCS-YDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP------VTSCAWNRDGKLIAAGCLDG---- 339 (641)
T ss_pred eeccccccCcccceEEec-CCCcEEEEecCCchhheeEEeeccCCCcccC------ceeeecCCCcchhhhcccCC----
Confidence 445569999988754443 3355556665544444454433 1 111111 15789999999988765443
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEec---c-CCCCCCccceEEEeeCCCCC
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV---K-GIPKSLSVGQVVWAPLNEGL 309 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l---~-~~~~~~~~~~~~wSPDg~~~ 309 (789)
.|..|+..+-.++.. . .......+..++||+||+.
T Consensus 340 ----------------------------------------SIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~- 378 (641)
T KOG0772|consen 340 ----------------------------------------SIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNY- 378 (641)
T ss_pred ----------------------------------------ceeeeecCCcccccceEeeeccCCCCceeEEEeccccch-
Confidence 344444322111111 0 0222335678999999999
Q ss_pred ccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCC---CCccCcceecCCCCEE
Q 003886 310 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES---ISSAFFPRFSPDGKFL 386 (789)
Q Consensus 310 ~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~---~~~~~~p~~SpDG~~l 386 (789)
|+..+. +..|.++||+ .-.++.....+ ....+...||||-+.|
T Consensus 379 ---LlSRg~---------------D~tLKvWDLr----------------q~kkpL~~~tgL~t~~~~tdc~FSPd~kli 424 (641)
T KOG0772|consen 379 ---LLSRGF---------------DDTLKVWDLR----------------QFKKPLNVRTGLPTPFPGTDCCFSPDDKLI 424 (641)
T ss_pred ---hhhccC---------------CCceeeeecc----------------ccccchhhhcCCCccCCCCccccCCCceEE
Confidence 887663 2357777773 22222211111 2235678999998866
Q ss_pred EEEecCCCCCCCCccccceeEEeecCC
Q 003886 387 VFLSAKSSVDSGAHSATDSLHRIDWPT 413 (789)
Q Consensus 387 a~~s~~~~~~~g~~~~~~~L~~~d~~~ 413 (789)
+.-+.-.. | .....|+.+|..+
T Consensus 425 ~TGtS~~~---~--~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 425 LTGTSAPN---G--MTAGTLFFFDRMT 446 (641)
T ss_pred EecccccC---C--CCCceEEEEeccc
Confidence 54433221 1 1234688888654
No 256
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=0.0012 Score=70.71 Aligned_cols=240 Identities=15% Similarity=0.195 Sum_probs=133.1
Q ss_pred EecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCC--CeEEEEecCCCCC
Q 003886 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSG--SKLLVVRNPENES 178 (789)
Q Consensus 101 ~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG--~~la~~~~~~~~~ 178 (789)
.+++|+|-...+...+ ..+..+++.........|.. .++....+||-+ -+||+-.-..+|.
T Consensus 130 ~~qfs~dEsl~arlv~----------nev~f~~~~~f~~~~~kl~~-------~~i~~f~lSpgp~~~~vAvyvPe~kGa 192 (566)
T KOG2315|consen 130 VPQFSIDESLAARLVS----------NEVQFYDLGSFKTIQHKLSV-------SGITMLSLSPGPEPPFVAVYVPEKKGA 192 (566)
T ss_pred ccccccchhhhhhhhc----------ceEEEEecCCccceeeeeec-------cceeeEEecCCCCCceEEEEccCCCCC
Confidence 6777788776666532 24555554332222223322 346677777764 4566544444466
Q ss_pred CeEEEEecCCc--eeEEEec-CCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCC
Q 003886 179 PIQFELWSQSQ--LEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKG 255 (789)
Q Consensus 179 ~~~~~i~~~~~--~~~~~~~-~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (789)
+....++.-.. ..+.... .--..++ -.+.|.+-|+-|+..+..+... ...+|.
T Consensus 193 Pa~vri~~~~~~~~~~~~a~ksFFkadk-------vqm~WN~~gt~LLvLastdVDk----------------tn~SYY- 248 (566)
T KOG2315|consen 193 PASVRIYKYPEEGQHQPVANKSFFKADK-------VQMKWNKLGTALLVLASTDVDK----------------TNASYY- 248 (566)
T ss_pred CcEEEEeccccccccchhhhccccccce-------eEEEeccCCceEEEEEEEeecC----------------CCcccc-
Confidence 66666662211 1111110 0000011 2688999999988876433211 011111
Q ss_pred cceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCc
Q 003886 256 QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 335 (789)
Q Consensus 256 ~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~ 335 (789)
+...||++++++... .+. ......+.++.|+|+|+. .+.+- |. -+.
T Consensus 249 ---------------GEq~Lyll~t~g~s~-~V~-L~k~GPVhdv~W~~s~~E----F~Vvy--------Gf-----MPA 294 (566)
T KOG2315|consen 249 ---------------GEQTLYLLATQGESV-SVP-LLKEGPVHDVTWSPSGRE----FAVVY--------GF-----MPA 294 (566)
T ss_pred ---------------ccceEEEEEecCceE-EEe-cCCCCCceEEEECCCCCE----EEEEE--------ec-----ccc
Confidence 337899999884433 332 456678899999999998 55442 11 233
Q ss_pred ceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCC
Q 003886 336 ALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (789)
Q Consensus 336 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~ 415 (789)
.+-++|+ ....+-.+.++ .-...-|||.|+.|++..-. +-..++-+||...-+
T Consensus 295 kvtifnl-----------------r~~~v~df~eg--pRN~~~fnp~g~ii~lAGFG--------NL~G~mEvwDv~n~K 347 (566)
T KOG2315|consen 295 KVTIFNL-----------------RGKPVFDFPEG--PRNTAFFNPHGNIILLAGFG--------NLPGDMEVWDVPNRK 347 (566)
T ss_pred eEEEEcC-----------------CCCEeEeCCCC--CccceEECCCCCEEEEeecC--------CCCCceEEEeccchh
Confidence 5566666 44444444333 33457899999998876643 234579999987722
Q ss_pred CCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEE
Q 003886 416 NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 463 (789)
Q Consensus 416 ~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~ 463 (789)
.++.-. . ..-.-+.|+|||++++..+.
T Consensus 348 --~i~~~~--a-----------------~~tt~~eW~PdGe~flTATT 374 (566)
T KOG2315|consen 348 --LIAKFK--A-----------------ANTTVFEWSPDGEYFLTATT 374 (566)
T ss_pred --hccccc--c-----------------CCceEEEEcCCCcEEEEEec
Confidence 222111 0 01224579999998876554
No 257
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=97.97 E-value=0.00018 Score=77.57 Aligned_cols=140 Identities=13% Similarity=0.139 Sum_probs=84.5
Q ss_pred CceEEEEEccCCceE-eccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhh
Q 003886 272 QPSLFVININSGEVQ-AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (789)
Q Consensus 272 ~~~l~v~d~~~g~~~-~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (789)
+..|-+||+.+++.. .+ ......+..++|||||+. |+-++. +..|+++...
T Consensus 699 d~Ti~lWDl~~~~~~~~l--~gHtdqIf~~AWSpdGr~----~AtVcK---------------Dg~~rVy~Pr------- 750 (1012)
T KOG1445|consen 699 DSTIELWDLANAKLYSRL--VGHTDQIFGIAWSPDGRR----IATVCK---------------DGTLRVYEPR------- 750 (1012)
T ss_pred cceeeeeehhhhhhhhee--ccCcCceeEEEECCCCcc----eeeeec---------------CceEEEeCCC-------
Confidence 467889999988654 33 233446789999999999 999882 3367777752
Q ss_pred hhhhhcCCCCCCCeeecCCCC----CccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeE
Q 003886 351 ELELKESSSEDLPVVNLTESI----SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 426 (789)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~~----~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v 426 (789)
.+ .+.+.++. .......|-=||+.|+....+.. ...+|.+||.++-....+....-++
T Consensus 751 ----------s~-e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~-------SeRQv~~Y~Aq~l~~~pl~t~~lDv 812 (1012)
T KOG1445|consen 751 ----------SR-EQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKS-------SERQVQMYDAQTLDLRPLYTQVLDV 812 (1012)
T ss_pred ----------CC-CCccccCCCCccCcceeEEEEecCcEEEEeccccc-------chhhhhhhhhhhccCCcceeeeecc
Confidence 11 22222222 22456788899999887776652 3457888886653333332221122
Q ss_pred EeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003886 427 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (789)
Q Consensus 427 ~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~ 473 (789)
.+ +..-+.+.+|...|++++..+....+|-+
T Consensus 813 ap----------------s~LvP~YD~Ds~~lfltGKGD~~v~~yEv 843 (1012)
T KOG1445|consen 813 AP----------------SPLVPHYDYDSNVLFLTGKGDRFVNMYEV 843 (1012)
T ss_pred cC----------------ccccccccCCCceEEEecCCCceEEEEEe
Confidence 11 33445677898877766544444444443
No 258
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=97.95 E-value=4.8e-05 Score=72.22 Aligned_cols=157 Identities=19% Similarity=0.204 Sum_probs=87.3
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCC-----CCCCC-CchhhccC--CCCCCc--ccHHHHHHHHHH
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYR-----GSLGF-GEEALQSL--PGKVGS--QDVNDVLTAIDH 661 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~r-----Gs~G~-G~~~~~~~--~~~~~~--~~~~D~~~~i~~ 661 (789)
.-+||++||-+.+ ...|......+.-+...-++|.-+ ...|. +..+.+.. ..+... .......+.+..
T Consensus 3 ~atIi~LHglGDs--g~~~~~~~~~l~l~NiKwIcP~aP~rpvt~~~G~~~~aWfd~~~~~~~~~~d~~~~~~aa~~i~~ 80 (206)
T KOG2112|consen 3 TATIIFLHGLGDS--GSGWAQFLKQLPLPNIKWICPTAPSRPVTLNGGAFMNAWFDIMELSSDAPEDEEGLHRAADNIAN 80 (206)
T ss_pred eEEEEEEecCCCC--CccHHHHHHcCCCCCeeEEcCCCCCCcccccCCCcccceecceeeCcccchhhhHHHHHHHHHHH
Confidence 3579999996554 344433333344445555555321 11121 11221111 011111 112222333444
Q ss_pred HHHc---CCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCC
Q 003886 662 VIDM---GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESP 738 (789)
Q Consensus 662 l~~~---~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (789)
++++ ..++.+||++-|.|+||.++++++..++....+.....++..-.. ...+.| +
T Consensus 81 Li~~e~~~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~----~~~~~~-----------------~ 139 (206)
T KOG2112|consen 81 LIDNEPANGIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLPRAS----IGLPGW-----------------L 139 (206)
T ss_pred HHHHHHHcCCCccceeEcccCchHHHHHHHHhccccccceeeccccccccch----hhccCC-----------------c
Confidence 4432 238899999999999999999999988765555555555432000 000000 0
Q ss_pred ChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 739 SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 739 ~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
+ .. + .+|+++.||+.|++||..-+.+..+.|+.
T Consensus 140 ------------~--~~-~-~~~i~~~Hg~~d~~vp~~~g~~s~~~l~~ 172 (206)
T KOG2112|consen 140 ------------P--GV-N-YTPILLCHGTADPLVPFRFGEKSAQFLKS 172 (206)
T ss_pred ------------c--cc-C-cchhheecccCCceeehHHHHHHHHHHHH
Confidence 0 01 1 67999999999999999988888777654
No 259
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=97.95 E-value=0.00058 Score=67.60 Aligned_cols=166 Identities=11% Similarity=0.020 Sum_probs=97.2
Q ss_pred CceEEEEEccCCce--EeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchh
Q 003886 272 QPSLFVININSGEV--QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 349 (789)
Q Consensus 272 ~~~l~v~d~~~g~~--~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 349 (789)
+.+|++|++.+... -.+ ......+-.+.|.+|++. |+..+ .+..++.+|+
T Consensus 68 Dr~I~LWnv~gdceN~~~l--kgHsgAVM~l~~~~d~s~----i~S~g---------------tDk~v~~wD~------- 119 (338)
T KOG0265|consen 68 DRAIVLWNVYGDCENFWVL--KGHSGAVMELHGMRDGSH----ILSCG---------------TDKTVRGWDA------- 119 (338)
T ss_pred cceEEEEeccccccceeee--ccccceeEeeeeccCCCE----EEEec---------------CCceEEEEec-------
Confidence 35788898765432 122 122335678999999998 77776 2347999998
Q ss_pred hhhhhhcCCCCCCC-eeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEe
Q 003886 350 SELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIP 428 (789)
Q Consensus 350 ~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~ 428 (789)
++|+ .++...+...+....-+.-|-.|+-...++ .++.+||..+.+..++......
T Consensus 120 ----------~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD----------~t~kl~D~R~k~~~~t~~~kyq--- 176 (338)
T KOG0265|consen 120 ----------ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDD----------GTLKLWDIRKKEAIKTFENKYQ--- 176 (338)
T ss_pred ----------ccceeeehhccccceeeecCccccCCeEEEecCCC----------ceEEEEeecccchhhcccccee---
Confidence 4554 455555555455555566677776655443 4688999876555433222222
Q ss_pred eeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC-CceeEEeeecCCEEEEEEe
Q 003886 429 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES-NFSWSLLTLDGDNIIAVSS 507 (789)
Q Consensus 429 ~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~-~~~~~~~s~dg~~l~~~~s 507 (789)
+..+.|.-++..+ +++.-++..++| |+..++...++.++. .+.....+++|..++-.+.
T Consensus 177 -----------------ltAv~f~d~s~qv-~sggIdn~ikvW--d~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM 236 (338)
T KOG0265|consen 177 -----------------LTAVGFKDTSDQV-ISGGIDNDIKVW--DLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM 236 (338)
T ss_pred -----------------EEEEEecccccce-eeccccCceeee--ccccCcceEEeecccCceeeEEeccCCCccccccc
Confidence 2345677666655 444334444444 555666666665554 3334466777776655443
Q ss_pred C
Q 003886 508 S 508 (789)
Q Consensus 508 s 508 (789)
+
T Consensus 237 d 237 (338)
T KOG0265|consen 237 D 237 (338)
T ss_pred c
Confidence 3
No 260
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=97.94 E-value=7.4e-05 Score=78.26 Aligned_cols=89 Identities=15% Similarity=0.255 Sum_probs=63.8
Q ss_pred HHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHh
Q 003886 612 KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ 691 (789)
Q Consensus 612 ~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~ 691 (789)
....+|.++|..|+.++.++ +..+.. ...+...-.+.+..+++.+++. ...++|-++|+|.||.++..+++.
T Consensus 130 s~V~~l~~~g~~vfvIsw~n-Pd~~~~-----~~~~edYi~e~l~~aid~v~~i--tg~~~InliGyCvGGtl~~~ala~ 201 (445)
T COG3243 130 SLVRWLLEQGLDVFVISWRN-PDASLA-----AKNLEDYILEGLSEAIDTVKDI--TGQKDINLIGYCVGGTLLAAALAL 201 (445)
T ss_pred cHHHHHHHcCCceEEEeccC-chHhhh-----hccHHHHHHHHHHHHHHHHHHH--hCccccceeeEecchHHHHHHHHh
Confidence 35788999999999999975 333222 1122222236677888888776 234789999999999999999988
Q ss_pred CCCc-eeEEEEeCCccch
Q 003886 692 APDK-FVAAAARNPLCNL 708 (789)
Q Consensus 692 ~p~~-~~a~v~~~pv~~~ 708 (789)
++.+ ++.++......|+
T Consensus 202 ~~~k~I~S~T~lts~~DF 219 (445)
T COG3243 202 MAAKRIKSLTLLTSPVDF 219 (445)
T ss_pred hhhcccccceeeecchhh
Confidence 8776 8887776655544
No 261
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.94 E-value=0.00035 Score=77.02 Aligned_cols=194 Identities=14% Similarity=0.068 Sum_probs=122.5
Q ss_pred EEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCcc
Q 003886 159 VVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS 237 (789)
Q Consensus 159 ~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~ 237 (789)
.+||++|+.|+-.-... +..++ .+++.. +......- +.....+..+||++.|+++......+ .|.
T Consensus 25 ~~~s~nG~~L~t~~~d~-----Vi~idv~t~~~~-l~s~~~ed------~d~ita~~l~~d~~~L~~a~rs~llr--v~~ 90 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDR-----VIIIDVATGSIA-LPSGSNED------EDEITALALTPDEEVLVTASRSQLLR--VWS 90 (775)
T ss_pred eeECCCCCEEEEecCce-----EEEEEccCCcee-cccCCccc------hhhhheeeecCCccEEEEeeccceEE--EEE
Confidence 79999999997764442 66666 444332 11111111 12347899999999988876654332 333
Q ss_pred CCCCCCCCCCcC-CCCCCCcceeeCCcccccCCccCceEEEEEccCCceEe-ccCCCCCCccceEEEeeCCCCCccEEEE
Q 003886 238 LGSTKGGSSDKD-CNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQA-VKGIPKSLSVGQVVWAPLNEGLHQYLVF 315 (789)
Q Consensus 238 ~~~~~~~~~~~~-~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~-l~~~~~~~~~~~~~wSPDg~~~~~~l~f 315 (789)
...++..+.++. +........+.+..+-..++.....+-|||+..+-.+. ++|. ..-+....|.|+-.+ ++++
T Consensus 91 L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~--gGvVssl~F~~~~~~---~lL~ 165 (775)
T KOG0319|consen 91 LPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGH--GGVVSSLLFHPHWNR---WLLA 165 (775)
T ss_pred cccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCC--CceEEEEEeCCccch---hhee
Confidence 333443444443 33333345677776555666778899999999887654 3322 334567788888765 1555
Q ss_pred EeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCC-C-eeecCCCCCccCcceecCCCCEEEEEecCC
Q 003886 316 VGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-P-VVNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (789)
Q Consensus 316 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~-~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~ 393 (789)
.+. .+..++++|+ ..+ . ...+..+...+.+..|++|+..+++.+.+.
T Consensus 166 sg~--------------~D~~v~vwnl-----------------~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDk 214 (775)
T KOG0319|consen 166 SGA--------------TDGTVRVWNL-----------------NDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDK 214 (775)
T ss_pred ecC--------------CCceEEEEEc-----------------ccCchHHHHHHhhhhheeeeeeccCCceEEEeccCc
Confidence 552 2336888887 322 2 345566777899999999999998877554
Q ss_pred CCCCCCccccceeEEeecCC
Q 003886 394 SVDSGAHSATDSLHRIDWPT 413 (789)
Q Consensus 394 ~~~~g~~~~~~~L~~~d~~~ 413 (789)
-+++||+..
T Consensus 215 -----------vi~vwd~~~ 223 (775)
T KOG0319|consen 215 -----------VIIVWDLVQ 223 (775)
T ss_pred -----------EEEEeehhh
Confidence 488899854
No 262
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.93 E-value=0.00015 Score=70.84 Aligned_cols=176 Identities=16% Similarity=0.098 Sum_probs=94.1
Q ss_pred CCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcC--
Q 003886 589 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG-- 666 (789)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~-- 666 (789)
..+.-++.+.|-|+. ...|..+...|-. -+.++.+.++| +|.-+. .....|+.+.++.+....
T Consensus 5 ~~~~~L~cfP~AGGs---a~~fr~W~~~lp~-~iel~avqlPG---R~~r~~--------ep~~~di~~Lad~la~el~~ 69 (244)
T COG3208 5 GARLRLFCFPHAGGS---ASLFRSWSRRLPA-DIELLAVQLPG---RGDRFG--------EPLLTDIESLADELANELLP 69 (244)
T ss_pred CCCceEEEecCCCCC---HHHHHHHHhhCCc-hhheeeecCCC---cccccC--------CcccccHHHHHHHHHHHhcc
Confidence 445567777776655 3445555554433 48999999977 443322 222445555555555432
Q ss_pred CCCCccEEEEEcCccHHHHHHHHHhCC---CceeEEEE---eCCccchhhhhcCCCCCcchhhhhccCccccccCCCCC-
Q 003886 667 LANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAA---RNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPS- 739 (789)
Q Consensus 667 ~~d~~rv~l~G~S~GG~~a~~~~~~~p---~~~~a~v~---~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 739 (789)
..-....+++||||||++|..+|.+.. ....+..+ .+|..+. .-......+-.+...+ ..+.+.+.
T Consensus 70 ~~~d~P~alfGHSmGa~lAfEvArrl~~~g~~p~~lfisg~~aP~~~~--~~~i~~~~D~~~l~~l-----~~lgG~p~e 142 (244)
T COG3208 70 PLLDAPFALFGHSMGAMLAFEVARRLERAGLPPRALFISGCRAPHYDR--GKQIHHLDDADFLADL-----VDLGGTPPE 142 (244)
T ss_pred ccCCCCeeecccchhHHHHHHHHHHHHHcCCCcceEEEecCCCCCCcc--cCCccCCCHHHHHHHH-----HHhCCCChH
Confidence 133457999999999999998886531 11233322 2332211 1111111222222221 22333331
Q ss_pred -hhhHHHHHhcCc-----------ccc--CCCCCCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 740 -VEDLTRFHSKSP-----------ISH--ISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 740 -~~~~~~~~~~sp-----------~~~--~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
.++.+.+.-.-| ..+ -..+.||+.++.|++|..|..++...+-+..+
T Consensus 143 ~led~El~~l~LPilRAD~~~~e~Y~~~~~~pl~~pi~~~~G~~D~~vs~~~~~~W~~~t~ 203 (244)
T COG3208 143 LLEDPELMALFLPILRADFRALESYRYPPPAPLACPIHAFGGEKDHEVSRDELGAWREHTK 203 (244)
T ss_pred HhcCHHHHHHHHHHHHHHHHHhcccccCCCCCcCcceEEeccCcchhccHHHHHHHHHhhc
Confidence 111111111111 111 24688999999999999999988887766554
No 263
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=97.92 E-value=9.3e-05 Score=77.61 Aligned_cols=165 Identities=10% Similarity=0.057 Sum_probs=100.4
Q ss_pred eeEEEEEEeecCCCCc-cceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEec---CCCcc
Q 003886 126 KKFMLSTVISKENENS-VTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHV---PQTVH 201 (789)
Q Consensus 126 ~~~l~~~~~~~~~~~~-~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~ 201 (789)
-+.+-+|++....... .+||... -.-++.+.|||.+ |+|..-.+ | .+.||+--....+-++ +.+.
T Consensus 486 astlsiWDLAapTprikaeltssa-----paCyALa~spDak-vcFsccsd-G---nI~vwDLhnq~~VrqfqGhtDGa- 554 (705)
T KOG0639|consen 486 ASTLSIWDLAAPTPRIKAELTSSA-----PACYALAISPDAK-VCFSCCSD-G---NIAVWDLHNQTLVRQFQGHTDGA- 554 (705)
T ss_pred cceeeeeeccCCCcchhhhcCCcc-----hhhhhhhcCCccc-eeeeeccC-C---cEEEEEcccceeeecccCCCCCc-
Confidence 4455556654433222 1333322 2356788999975 56765443 2 4667732211222222 2333
Q ss_pred ccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEcc
Q 003886 202 GSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 281 (789)
Q Consensus 202 g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~ 281 (789)
.++..|+||.+|.... -++.|.-||+.
T Consensus 555 ---------scIdis~dGtklWTGG--------------------------------------------lDntvRcWDlr 581 (705)
T KOG0639|consen 555 ---------SCIDISKDGTKLWTGG--------------------------------------------LDNTVRCWDLR 581 (705)
T ss_pred ---------eeEEecCCCceeecCC--------------------------------------------Cccceeehhhh
Confidence 7899999999886532 34667778887
Q ss_pred CCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCC
Q 003886 282 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED 361 (789)
Q Consensus 282 ~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 361 (789)
.|.-.+- ..-...+.+...+|.|.| |+..- .++.++++.. .+
T Consensus 582 egrqlqq--hdF~SQIfSLg~cP~~dW----lavGM---------------ens~vevlh~-----------------sk 623 (705)
T KOG0639|consen 582 EGRQLQQ--HDFSSQIFSLGYCPTGDW----LAVGM---------------ENSNVEVLHT-----------------SK 623 (705)
T ss_pred hhhhhhh--hhhhhhheecccCCCccc----eeeec---------------ccCcEEEEec-----------------CC
Confidence 6632211 222335678889999998 76543 2336778775 44
Q ss_pred CCeeecCCCCCccCcceecCCCCEEEEEecC
Q 003886 362 LPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (789)
Q Consensus 362 ~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~ 392 (789)
.+..+|..+..-+.+..|++-||+++.+..+
T Consensus 624 p~kyqlhlheScVLSlKFa~cGkwfvStGkD 654 (705)
T KOG0639|consen 624 PEKYQLHLHESCVLSLKFAYCGKWFVSTGKD 654 (705)
T ss_pred ccceeecccccEEEEEEecccCceeeecCch
Confidence 5567888888889999999999987665544
No 264
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=0.0019 Score=69.44 Aligned_cols=153 Identities=18% Similarity=0.202 Sum_probs=88.4
Q ss_pred eEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCe-eecCCCCCccCcc
Q 003886 299 QVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFP 377 (789)
Q Consensus 299 ~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~Lt~~~~~~~~p 377 (789)
++.|.+-|.. |+..+..+- .+.+.. |-....||.+++ ++..+ ..|. ..+.+...
T Consensus 222 qm~WN~~gt~----LLvLastdV-Dktn~S--YYGEq~Lyll~t-----------------~g~s~~V~L~-k~GPVhdv 276 (566)
T KOG2315|consen 222 QMKWNKLGTA----LLVLASTDV-DKTNAS--YYGEQTLYLLAT-----------------QGESVSVPLL-KEGPVHDV 276 (566)
T ss_pred EEEeccCCce----EEEEEEEee-cCCCcc--ccccceEEEEEe-----------------cCceEEEecC-CCCCceEE
Confidence 6789999987 666542221 122222 335668999997 42222 2343 35678899
Q ss_pred eecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCE
Q 003886 378 RFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCT 457 (789)
Q Consensus 378 ~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~ 457 (789)
.|||+|+.++.+. |+-.+ .+-++|+...-...+..+. -..+-|+|.|+.
T Consensus 277 ~W~~s~~EF~Vvy-------GfMPA--kvtifnlr~~~v~df~egp----------------------RN~~~fnp~g~i 325 (566)
T KOG2315|consen 277 TWSPSGREFAVVY-------GFMPA--KVTIFNLRGKPVFDFPEGP----------------------RNTAFFNPHGNI 325 (566)
T ss_pred EECCCCCEEEEEE-------ecccc--eEEEEcCCCCEeEeCCCCC----------------------ccceEECCCCCE
Confidence 9999999987665 22222 3556666542211111111 124569999998
Q ss_pred EEEEEEeCCeEEEEEEECCCCcEEEecCCCC-CceeEEeeecCCEEEEEEeCC
Q 003886 458 MLLSSIWGSSQVIISVNVSSGELLRITPAES-NFSWSLLTLDGDNIIAVSSSP 509 (789)
Q Consensus 458 l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~-~~~~~~~s~dg~~l~~~~ss~ 509 (789)
|++.+-..-...+-.+|+.+ .+.|..... +.+...|+|||.+++....+|
T Consensus 326 i~lAGFGNL~G~mEvwDv~n--~K~i~~~~a~~tt~~eW~PdGe~flTATTaP 376 (566)
T KOG2315|consen 326 ILLAGFGNLPGDMEVWDVPN--RKLIAKFKAANTTVFEWSPDGEYFLTATTAP 376 (566)
T ss_pred EEEeecCCCCCceEEEeccc--hhhccccccCCceEEEEcCCCcEEEEEeccc
Confidence 87776544233344446545 223332221 335678999999988776654
No 265
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=97.89 E-value=0.0001 Score=75.74 Aligned_cols=266 Identities=13% Similarity=0.098 Sum_probs=142.2
Q ss_pred EEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeE
Q 003886 113 FSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEK 192 (789)
Q Consensus 113 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~ 192 (789)
|......+..+.....|.+|++.....+.... +....+++....+-++|++++-.++. +..++|.++. .+-
T Consensus 183 ~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~t----LaGs~g~it~~d~d~~~~~~iAas~d--~~~r~Wnvd~---~r~ 253 (459)
T KOG0288|consen 183 FLRNSDTLATGGSDRIIKLWNVLGEKSELIST----LAGSLGNITSIDFDSDNKHVIAASND--KNLRLWNVDS---LRL 253 (459)
T ss_pred EccCcchhhhcchhhhhhhhhcccchhhhhhh----hhccCCCcceeeecCCCceEEeecCC--Cceeeeeccc---hhh
Confidence 33333345566666666666654433222211 11123568889999999998765544 3334444432 211
Q ss_pred EEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCC---CCcCCCCCC--CcceeeCCccccc
Q 003886 193 EFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGS---SDKDCNSWK--GQGDWEEDWGETY 267 (789)
Q Consensus 193 ~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~d~g~~~ 267 (789)
.-.+. ++.+.| ..+.+.-...+++-.+.+.+.+ .|+.......+ ....+.... ..-..+
T Consensus 254 ~~TLs-GHtdkV------t~ak~~~~~~~vVsgs~DRtiK--~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~S------- 317 (459)
T KOG0288|consen 254 RHTLS-GHTDKV------TAAKFKLSHSRVVSGSADRTIK--LWDLQKAYCSKTVLPGSQCNDIVCSISDVIS------- 317 (459)
T ss_pred hhhhc-ccccce------eeehhhccccceeeccccchhh--hhhhhhhheeccccccccccceEecceeeee-------
Confidence 11121 233333 5666777666655555555433 33321111000 000000000 011122
Q ss_pred CCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccc
Q 003886 268 AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 347 (789)
Q Consensus 268 ~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 347 (789)
+--+..|-.||..++..+.. .+....+.++..++||.. |...+ |+..|-++|+
T Consensus 318 -gH~DkkvRfwD~Rs~~~~~s--v~~gg~vtSl~ls~~g~~----lLsss---------------RDdtl~viDl----- 370 (459)
T KOG0288|consen 318 -GHFDKKVRFWDIRSADKTRS--VPLGGRVTSLDLSMDGLE----LLSSS---------------RDDTLKVIDL----- 370 (459)
T ss_pred -cccccceEEEeccCCceeeE--eecCcceeeEeeccCCeE----Eeeec---------------CCCceeeeec-----
Confidence 12334588899877776655 455668889999999998 66554 3336778887
Q ss_pred hhhhhhhhcCCCCCCCeeecCCC-----CCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccc
Q 003886 348 EASELELKESSSEDLPVVNLTES-----ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK 422 (789)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~Lt~~-----~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~ 422 (789)
.+.+++....- ........|||||.+++-.+.+. .+|+|++.+++.......
T Consensus 371 ------------Rt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dg-----------sv~iW~v~tgKlE~~l~~ 427 (459)
T KOG0288|consen 371 ------------RTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADG-----------SVYIWSVFTGKLEKVLSL 427 (459)
T ss_pred ------------ccccEEEEeeccccccccccceeEECCCCceeeeccCCC-----------cEEEEEccCceEEEEecc
Confidence 45555443221 22356789999999998777654 599999988665321111
Q ss_pred eeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003886 423 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (789)
Q Consensus 423 ~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (789)
. . +.+ .+....|.|-|+.++ +++......||
T Consensus 428 s----------~--s~~-----aI~s~~W~~sG~~Ll-sadk~~~v~lW 458 (459)
T KOG0288|consen 428 S----------T--SNA-----AITSLSWNPSGSGLL-SADKQKAVTLW 458 (459)
T ss_pred C----------C--CCc-----ceEEEEEcCCCchhh-cccCCcceEec
Confidence 1 0 111 245678999888774 33334444444
No 266
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=97.88 E-value=0.00029 Score=67.42 Aligned_cols=92 Identities=21% Similarity=0.200 Sum_probs=68.1
Q ss_pred HHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHh---------CCCceeEEEEeCCccchhhhhcCCCCCcchhhhh
Q 003886 655 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ---------APDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 725 (789)
Q Consensus 655 ~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~---------~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~ 725 (789)
+....+|+.++|-.| ||+|+|.|+.++..+++. .| .|+-+|+.+|+.-...
T Consensus 92 l~yl~~~i~enGPFD----GllGFSQGA~laa~l~~~~~~~~~~~~~P-~~kF~v~~SGf~~~~~--------------- 151 (230)
T KOG2551|consen 92 LEYLEDYIKENGPFD----GLLGFSQGAALAALLAGLGQKGLPYVKQP-PFKFAVFISGFKFPSK--------------- 151 (230)
T ss_pred HHHHHHHHHHhCCCc----cccccchhHHHHHHhhcccccCCcccCCC-CeEEEEEEecCCCCcc---------------
Confidence 445566777787777 899999999999998872 12 3678888777642100
Q ss_pred ccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCCC
Q 003886 726 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPFS 788 (789)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~~ 788 (789)
. .. + ..+...+++|.|-+.|+.|.+||..-+..|++..+++
T Consensus 152 ------------~--~~-~-------~~~~~~i~~PSLHi~G~~D~iv~~~~s~~L~~~~~~a 192 (230)
T KOG2551|consen 152 ------------K--LD-E-------SAYKRPLSTPSLHIFGETDTIVPSERSEQLAESFKDA 192 (230)
T ss_pred ------------h--hh-h-------hhhccCCCCCeeEEecccceeecchHHHHHHHhcCCC
Confidence 0 00 0 1234578999999999999999999999999998764
No 267
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.88 E-value=0.00021 Score=68.80 Aligned_cols=133 Identities=9% Similarity=0.107 Sum_probs=82.7
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhh
Q 003886 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (789)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (789)
..+.+||..+|+..+- +.-...+.+...|+||+. +-.+.- +.|--+|.
T Consensus 165 ~tVRLWD~rTgt~v~s--L~~~s~VtSlEvs~dG~i-----lTia~g---------------ssV~Fwda---------- 212 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQS--LEFNSPVTSLEVSQDGRI-----LTIAYG---------------SSVKFWDA---------- 212 (334)
T ss_pred CceEEEEeccCcEEEE--EecCCCCcceeeccCCCE-----EEEecC---------------ceeEEecc----------
Confidence 4678899999876554 344557789999999984 444421 13444444
Q ss_pred hhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcc-cceeeEEeeee
Q 003886 353 ELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSL-EKIVDVIPVVQ 431 (789)
Q Consensus 353 ~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t-~~~~~v~~~~~ 431 (789)
.+-....-..-...+.+.+.+|+-.. |+... ....+|++|..+++.+..- .+.
T Consensus 213 -------ksf~~lKs~k~P~nV~SASL~P~k~~--fVaGg---------ed~~~~kfDy~TgeEi~~~nkgh-------- 266 (334)
T KOG0278|consen 213 -------KSFGLLKSYKMPCNVESASLHPKKEF--FVAGG---------EDFKVYKFDYNTGEEIGSYNKGH-------- 266 (334)
T ss_pred -------ccccceeeccCccccccccccCCCce--EEecC---------cceEEEEEeccCCceeeecccCC--------
Confidence 11111111112334667788998643 33322 1246899999998775331 111
Q ss_pred ccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEEC
Q 003886 432 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 475 (789)
Q Consensus 432 ~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl 475 (789)
| ..+..+.|+|||. +|.+++.+|...||.+..
T Consensus 267 ------~-----gpVhcVrFSPdGE-~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 267 ------F-----GPVHCVRFSPDGE-LYASGSEDGTIRLWQTTP 298 (334)
T ss_pred ------C-----CceEEEEECCCCc-eeeccCCCceEEEEEecC
Confidence 1 1345678999996 889999999999998875
No 268
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.87 E-value=0.0028 Score=67.29 Aligned_cols=241 Identities=16% Similarity=0.104 Sum_probs=137.1
Q ss_pred EEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEE--ec-CCCccccccCCCcccceeecCCC--CEEEEEeecCCCC
Q 003886 158 AVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEF--HV-PQTVHGSVYADGWFEGISWNSDE--TLIAYVAEEPSPS 232 (789)
Q Consensus 158 ~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~--~~-~~~~~g~v~~d~~~~~~~wSpDg--~~la~~~~~~~~~ 232 (789)
...||-|.+++|.+.... ++....++...+.- .+ +.++ ..++|||.| .-|||-......
T Consensus 136 ~~k~s~~D~y~ARvv~~s-----l~i~e~t~n~~~~p~~~lr~~gi----------~dFsisP~~n~~~la~~tPEk~~- 199 (561)
T COG5354 136 VLKFSIDDKYVARVVGSS-----LYIHEITDNIEEHPFKNLRPVGI----------LDFSISPEGNHDELAYWTPEKLN- 199 (561)
T ss_pred eeeeeecchhhhhhccCe-----EEEEecCCccccCchhhccccce----------eeEEecCCCCCceEEEEccccCC-
Confidence 567999999999885543 33333233222110 11 1222 789999975 346665433211
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccE
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 312 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~ 312 (789)
...++-++.+..+.+.... .--..+--++.|.+.|+.
T Consensus 200 --------------------------------------kpa~~~i~sIp~~s~l~tk-~lfk~~~~qLkW~~~g~~---- 236 (561)
T COG5354 200 --------------------------------------KPAMVRILSIPKNSVLVTK-NLFKVSGVQLKWQVLGKY---- 236 (561)
T ss_pred --------------------------------------CCcEEEEEEccCCCeeeee-eeEeecccEEEEecCCce----
Confidence 2245555665555444332 222334558899999999
Q ss_pred EEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecC
Q 003886 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (789)
Q Consensus 313 l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~ 392 (789)
|.+...++. +.+-.| -..+.||++++ ....++..-.-.+.+....|+|+++.++.++
T Consensus 237 ll~l~~t~~--ksnKsy--fgesnLyl~~~-----------------~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~-- 293 (561)
T COG5354 237 LLVLVMTHT--KSNKSY--FGESNLYLLRI-----------------TERSIPVEKDLKDPVHDFTWEPLSSRFAVIS-- 293 (561)
T ss_pred EEEEEEEee--ecccce--eccceEEEEee-----------------cccccceeccccccceeeeecccCCceeEEe--
Confidence 888765443 222211 23468999998 3233322223356688899999999999988
Q ss_pred CCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003886 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (789)
Q Consensus 393 ~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (789)
|++.. .+-.+|+.++-.-.+... --..+.|+|.++++++.+-..-..++-.
T Consensus 294 -----g~~pa--~~s~~~lr~Nl~~~~Pe~----------------------~rNT~~fsp~~r~il~agF~nl~gni~i 344 (561)
T COG5354 294 -----GYMPA--SVSVFDLRGNLRFYFPEQ----------------------KRNTIFFSPHERYILFAGFDNLQGNIEI 344 (561)
T ss_pred -----ccccc--ceeecccccceEEecCCc----------------------ccccccccCcccEEEEecCCccccceEE
Confidence 22222 355566655311000000 1135679999999988765554556666
Q ss_pred EECCCCcEEEe-cCCCCCceeEEeeecCCEEEEEEeCCC
Q 003886 473 VNVSSGELLRI-TPAESNFSWSLLTLDGDNIIAVSSSPV 510 (789)
Q Consensus 473 ~dl~tg~~~~l-t~~~~~~~~~~~s~dg~~l~~~~ss~~ 510 (789)
++.. |+...+ +......+...|+||+..+.....++.
T Consensus 345 ~~~~-~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k 382 (561)
T COG5354 345 FDPA-GRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEK 382 (561)
T ss_pred eccC-CceEEEEEeecCCceEeeccCCceEEEecCCCcc
Confidence 6764 444444 222223455679999987766655554
No 269
>COG0627 Predicted esterase [General function prediction only]
Probab=97.86 E-value=3.7e-05 Score=80.18 Aligned_cols=120 Identities=16% Similarity=0.133 Sum_probs=72.4
Q ss_pred CCCCCcEEEEEcCCCCCCCchhhH---HHHHHHHHCCcEEEEEcCC--------------CC-CCCCchhhccCCCCCCc
Q 003886 588 DCSCDPLIVVLHGGPHSVSLSSYS---KSLAFLSSVGYSLLIVNYR--------------GS-LGFGEEALQSLPGKVGS 649 (789)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~---~~~~~la~~Gy~V~~~d~r--------------Gs-~G~G~~~~~~~~~~~~~ 649 (789)
.+++.|+++++||-... .+.+. ..-......|++++++|-. |. .|+-..+.... ...+.
T Consensus 50 m~~~ipV~~~l~G~t~~--~~~~~~~~g~~~~a~~~g~~~~~p~t~~~~~~~~~~vv~p~G~~~sfY~d~~~~~-~~~~~ 126 (316)
T COG0627 50 MGRDIPVLYLLSGLTCN--EPNVYLLDGLRRQADESGWAVVTPDTSPRGAGVNISVVMPLGGGASFYSDWTQPP-WASGP 126 (316)
T ss_pred cCCCCCEEEEeCCCCCC--CCceEeccchhhhhhhcCeEEecCCCCcccCCCCccccccCCCccceecccccCc-cccCc
Confidence 46789999999994432 22221 1233556788999887432 11 11211121110 01111
Q ss_pred ccHHHHH-HHHH-HHHHcCCCCC--ccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhh
Q 003886 650 QDVNDVL-TAID-HVIDMGLANP--SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 710 (789)
Q Consensus 650 ~~~~D~~-~~i~-~l~~~~~~d~--~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~ 710 (789)
...++.+ .-+- .+.+....+. ++.+|+||||||+-|+.+|.++|++|+.+.+.+|+.+...
T Consensus 127 ~q~~tfl~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~ 191 (316)
T COG0627 127 YQWETFLTQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSS 191 (316)
T ss_pred cchhHHHHhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceeccccccccccc
Confidence 2333322 2222 2223333444 3899999999999999999999999999999999988653
No 270
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=97.86 E-value=0.00034 Score=71.49 Aligned_cols=106 Identities=22% Similarity=0.223 Sum_probs=68.8
Q ss_pred CCCCCcEEEEEcCCCCCCCchhhHHHHHHHH-HCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcC
Q 003886 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG 666 (789)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la-~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~ 666 (789)
...+.|.++++||--++ ...|......|+ ..|-.|+++|.|- +|.+..... .-.....+|+...++.....
T Consensus 48 ~~~~~Pp~i~lHGl~GS--~~Nw~sv~k~Ls~~l~~~v~~vd~Rn---HG~Sp~~~~--h~~~~ma~dv~~Fi~~v~~~- 119 (315)
T KOG2382|consen 48 NLERAPPAIILHGLLGS--KENWRSVAKNLSRKLGRDVYAVDVRN---HGSSPKITV--HNYEAMAEDVKLFIDGVGGS- 119 (315)
T ss_pred ccCCCCceEEecccccC--CCCHHHHHHHhcccccCceEEEeccc---CCCCccccc--cCHHHHHHHHHHHHHHcccc-
Confidence 45678999999996664 467776666666 4678999999996 444432211 11222245555555554432
Q ss_pred CCCCccEEEEEcCccH-HHHHHHHHhCCCceeEEEEe
Q 003886 667 LANPSKVTVVGGSHGG-FLTTHLIGQAPDKFVAAAAR 702 (789)
Q Consensus 667 ~~d~~rv~l~G~S~GG-~~a~~~~~~~p~~~~a~v~~ 702 (789)
.-..++.++|||||| -+++..+...|+++..+|+.
T Consensus 120 -~~~~~~~l~GHsmGG~~~~m~~t~~~p~~~~rliv~ 155 (315)
T KOG2382|consen 120 -TRLDPVVLLGHSMGGVKVAMAETLKKPDLIERLIVE 155 (315)
T ss_pred -cccCCceecccCcchHHHHHHHHHhcCcccceeEEE
Confidence 234678999999999 66666666778877766654
No 271
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=97.85 E-value=0.00013 Score=74.90 Aligned_cols=269 Identities=12% Similarity=0.104 Sum_probs=142.4
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
+.+....|-++...|+.. +...++.+| ..++.......-.+..|.+ ..+.+-+|++++.-.+.+....
T Consensus 176 gev~~v~~l~~sdtlatg-----g~Dr~Ik~W~v~~~k~~~~~tLaGs~g~i------t~~d~d~~~~~~iAas~d~~~r 244 (459)
T KOG0288|consen 176 GEVHDVEFLRNSDTLATG-----GSDRIIKLWNVLGEKSELISTLAGSLGNI------TSIDFDSDNKHVIAASNDKNLR 244 (459)
T ss_pred cccceeEEccCcchhhhc-----chhhhhhhhhcccchhhhhhhhhccCCCc------ceeeecCCCceEEeecCCCcee
Confidence 456677888887777753 333467777 3332222222112222333 7889999999988777766443
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccE
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 312 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~ 312 (789)
.|+.........+..|..-.....|...--....+..+..|..||+..+....- ......+..++-+ ..
T Consensus 245 --~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt--~l~~S~cnDI~~~---~~---- 313 (459)
T KOG0288|consen 245 --LWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKT--VLPGSQCNDIVCS---IS---- 313 (459)
T ss_pred --eeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecc--ccccccccceEec---ce----
Confidence 444332222222222222111111111111123344556777788776543222 1111223344443 12
Q ss_pred EEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecC
Q 003886 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (789)
Q Consensus 313 l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~ 392 (789)
.++.+. .+..|..+|. .+...+.--+..+-+.+...|+||..|...+.+
T Consensus 314 ~~~SgH--------------~DkkvRfwD~-----------------Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRD 362 (459)
T KOG0288|consen 314 DVISGH--------------FDKKVRFWDI-----------------RSADKTRSVPLGGRVTSLDLSMDGLELLSSSRD 362 (459)
T ss_pred eeeecc--------------cccceEEEec-----------------cCCceeeEeecCcceeeEeeccCCeEEeeecCC
Confidence 344431 2235777886 334444333344578899999999998776544
Q ss_pred CCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCcccccc-CCCCCccccCCCEEEEEEEeCCeEEEE
Q 003886 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSS-SILSNPWLSDGCTMLLSSIWGSSQVII 471 (789)
Q Consensus 393 ~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~-~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (789)
+ .|-++|+.+.+.+..... +|..+. ......||||++++. .+ .....+|
T Consensus 363 d-----------tl~viDlRt~eI~~~~sA----------------~g~k~asDwtrvvfSpd~~Yva-AG--S~dgsv~ 412 (459)
T KOG0288|consen 363 D-----------TLKVIDLRTKEIRQTFSA----------------EGFKCASDWTRVVFSPDGSYVA-AG--SADGSVY 412 (459)
T ss_pred C-----------ceeeeecccccEEEEeec----------------cccccccccceeEECCCCceee-ec--cCCCcEE
Confidence 3 478888877555421111 111111 235778999999654 32 3344677
Q ss_pred EEECCCCcEEEecCCCC-C--ceeEEeeecCCEEEEE
Q 003886 472 SVNVSSGELLRITPAES-N--FSWSLLTLDGDNIIAV 505 (789)
Q Consensus 472 ~~dl~tg~~~~lt~~~~-~--~~~~~~s~dg~~l~~~ 505 (789)
.+++.+|+++.+....+ . +.-..|++.|..++..
T Consensus 413 iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsa 449 (459)
T KOG0288|consen 413 IWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSA 449 (459)
T ss_pred EEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcc
Confidence 77888999987755443 2 3334666666665543
No 272
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.84 E-value=0.036 Score=68.26 Aligned_cols=132 Identities=12% Similarity=0.089 Sum_probs=67.9
Q ss_pred cCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCccccee----eEEeeeeccCCCCCccccccCCCCC
Q 003886 374 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV----DVIPVVQCAEGDCFPGLYSSSILSN 449 (789)
Q Consensus 374 ~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~----~v~~~~~~~~~~~f~g~~~~~~~~~ 449 (789)
....+|+|||++|++.... ..+|+++|+.+++...+..+.. ....+.. .+..-..........+
T Consensus 742 P~GIavspdG~~LYVADs~----------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~--~dG~g~~~~l~~P~Gv 809 (1057)
T PLN02919 742 PSGISLSPDLKELYIADSE----------SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGD--HDGVGSEVLLQHPLGV 809 (1057)
T ss_pred ccEEEEeCCCCEEEEEECC----------CCeEEEEECCCCcEEEEEecccccCcccccccC--CCCchhhhhccCCcee
Confidence 4457899999987655432 3579999988755321111000 0000000 0000000001123466
Q ss_pred ccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC--------------CceeEEeeecCCEEEEEEeCCCCCCeE
Q 003886 450 PWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--------------NFSWSLLTLDGDNIIAVSSSPVDVPQV 515 (789)
Q Consensus 450 ~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~--------------~~~~~~~s~dg~~l~~~~ss~~~p~~i 515 (789)
.+++||+ ||++. .+...|.++|.+++.+..+..... ......++++|+ ++.+ .+.+ ..|
T Consensus 810 avd~dG~-LYVAD--s~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVa-Dt~N--n~I 882 (1057)
T PLN02919 810 LCAKDGQ-IYVAD--SYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVA-DTNN--SLI 882 (1057)
T ss_pred eEeCCCc-EEEEE--CCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEE-ECCC--CEE
Confidence 7889997 66553 334567778888888776643210 112346677775 4333 3322 247
Q ss_pred EEEeecccC
Q 003886 516 KYGYFVDKA 524 (789)
Q Consensus 516 ~~~~~~~~~ 524 (789)
.++++.+++
T Consensus 883 rvid~~~~~ 891 (1057)
T PLN02919 883 RYLDLNKGE 891 (1057)
T ss_pred EEEECCCCc
Confidence 777776543
No 273
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.83 E-value=0.0026 Score=67.55 Aligned_cols=245 Identities=15% Similarity=0.173 Sum_probs=137.7
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecC-CCccccccCCCcccceeecCCCCEEEEEeecCCCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~ 234 (789)
+....|||-|++|++....+ ..+|.+....+++... ..+ ..+.+||.|+.|..-...+.. .
T Consensus 35 ~~~~~~SP~G~~l~~~~~~~------V~~~~g~~~~~l~~~~~~~V----------~~~~fSP~~kYL~tw~~~pi~-~- 96 (561)
T COG5354 35 VAYVSESPLGTYLFSEHAAG------VECWGGPSKAKLVRFRHPDV----------KYLDFSPNEKYLVTWSREPII-E- 96 (561)
T ss_pred hhheeecCcchheehhhccc------eEEccccchhheeeeecCCc----------eecccCcccceeeeeccCCcc-C-
Confidence 66788999999998754433 6677433323444432 233 678899999998765443321 0
Q ss_pred CccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEecc-CCCCCCccc-eEEEeeCCCCCccE
Q 003886 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVG-QVVWAPLNEGLHQY 312 (789)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~-~~~~~~~~~-~~~wSPDg~~~~~~ 312 (789)
+++ ...+-| ..+++++||..+|.+..-. ..+...... -+.||-|.+.
T Consensus 97 -------------pe~-------e~sp~~-------~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y---- 145 (561)
T COG5354 97 -------------PEI-------EISPFT-------SKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKY---- 145 (561)
T ss_pred -------------hhh-------ccCCcc-------ccCceeEEeccCceeEeeccccCCcccccceeeeeecchh----
Confidence 000 011111 2358999999999765431 112221122 5689999987
Q ss_pred EEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCC--CCEEEEEe
Q 003886 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPD--GKFLVFLS 390 (789)
Q Consensus 313 l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpD--G~~la~~s 390 (789)
++.+. ...|+++++. ++........|. ...+....|||. +..|||..
T Consensus 146 ~ARvv----------------~~sl~i~e~t-------------~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~t 194 (561)
T COG5354 146 VARVV----------------GSSLYIHEIT-------------DNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWT 194 (561)
T ss_pred hhhhc----------------cCeEEEEecC-------------CccccCchhhcc--ccceeeEEecCCCCCceEEEEc
Confidence 66653 1267787751 011222233332 234667788886 45677777
Q ss_pred cCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeC-----
Q 003886 391 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG----- 465 (789)
Q Consensus 391 ~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~----- 465 (789)
.... +...++.++.++.+.. ..+.. +..+ +--.+.|.+.|++|.+....+
T Consensus 195 PEk~------~kpa~~~i~sIp~~s~-l~tk~---lfk~---------------~~~qLkW~~~g~~ll~l~~t~~ksnK 249 (561)
T COG5354 195 PEKL------NKPAMVRILSIPKNSV-LVTKN---LFKV---------------SGVQLKWQVLGKYLLVLVMTHTKSNK 249 (561)
T ss_pred cccC------CCCcEEEEEEccCCCe-eeeee---eEee---------------cccEEEEecCCceEEEEEEEeeeccc
Confidence 6553 1234566666653222 11111 2221 112567999999998877543
Q ss_pred ---CeEEEEEEECCCCcEEEec-CCCCCceeEEeeecCCEEEEEE
Q 003886 466 ---SSQVIISVNVSSGELLRIT-PAESNFSWSLLTLDGDNIIAVS 506 (789)
Q Consensus 466 ---~~~~l~~~dl~tg~~~~lt-~~~~~~~~~~~s~dg~~l~~~~ 506 (789)
|..+||.+++.... .++. ...+.+....|.|+++.+..++
T Consensus 250 syfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~ 293 (561)
T COG5354 250 SYFGESNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVIS 293 (561)
T ss_pred ceeccceEEEEeecccc-cceeccccccceeeeecccCCceeEEe
Confidence 34678888875333 3333 2233344567888998877665
No 274
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.82 E-value=0.0011 Score=67.85 Aligned_cols=175 Identities=17% Similarity=0.129 Sum_probs=95.6
Q ss_pred cceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccC
Q 003886 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (789)
Q Consensus 211 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (789)
..+++|+||+.+|++.... ....|++....+.....+
T Consensus 27 ~s~AvS~dg~~~A~v~~~~-----------------------------------------~~~~L~~~~~~~~~~~~~-- 63 (253)
T PF10647_consen 27 TSPAVSPDGSRVAAVSEGD-----------------------------------------GGRSLYVGPAGGPVRPVL-- 63 (253)
T ss_pred cceEECCCCCeEEEEEEcC-----------------------------------------CCCEEEEEcCCCcceeec--
Confidence 6899999999999987221 346788887554433333
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCC
Q 003886 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 370 (789)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~ 370 (789)
. ......|.|+++|. +.++...... ..++. +... .+.....+.-.
T Consensus 64 -~-g~~l~~PS~d~~g~-----~W~v~~~~~~------------~~~~~-~~~~---------------g~~~~~~v~~~ 108 (253)
T PF10647_consen 64 -T-GGSLTRPSWDPDGW-----VWTVDDGSGG------------VRVVR-DSAS---------------GTGEPVEVDWP 108 (253)
T ss_pred -c-CCccccccccCCCC-----EEEEEcCCCc------------eEEEE-ecCC---------------CcceeEEeccc
Confidence 1 22667899999965 4554422111 11222 2100 11222223222
Q ss_pred -C-CccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCC--CC-CCCcccceeeEEeeeeccCCCCCccccccC
Q 003886 371 -I-SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT--NG-NFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 445 (789)
Q Consensus 371 -~-~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~--~~-~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~ 445 (789)
. +.+...++||||+++|++.... +..+|++.-+.. ++ ...++.. ..+.. . . ...
T Consensus 109 ~~~~~I~~l~vSpDG~RvA~v~~~~--------~~~~v~va~V~r~~~g~~~~l~~~-~~~~~---~----~-----~~~ 167 (253)
T PF10647_consen 109 GLRGRITALRVSPDGTRVAVVVEDG--------GGGRVYVAGVVRDGDGVPRRLTGP-RRVAP---P----L-----LSD 167 (253)
T ss_pred ccCCceEEEEECCCCcEEEEEEecC--------CCCeEEEEEEEeCCCCCcceeccc-eEecc---c----c-----cCc
Confidence 1 1678899999999999999765 235677765432 22 1112111 11110 0 0 013
Q ss_pred CCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecC
Q 003886 446 ILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 485 (789)
Q Consensus 446 ~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~ 485 (789)
+..+.|.++++.+++....+..... .+..+++..+.++.
T Consensus 168 v~~v~W~~~~~L~V~~~~~~~~~~~-~v~~dG~~~~~l~~ 206 (253)
T PF10647_consen 168 VTDVAWSDDSTLVVLGRSAGGPVVR-LVSVDGGPSTPLPS 206 (253)
T ss_pred ceeeeecCCCEEEEEeCCCCCceeE-EEEccCCcccccCC
Confidence 4578899998755444333333333 46666777777633
No 275
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.81 E-value=0.0041 Score=68.22 Aligned_cols=157 Identities=15% Similarity=0.162 Sum_probs=98.2
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec-CC--ceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QS--QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~--~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~ 230 (789)
..+.+.++|-+.+.||..+..+ .+++|. .. -.+.+++. +..+.| +++.|++.| +|..+.
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g-----~IEiwN~~~~w~~~~vi~g--~~drsI------E~L~W~e~~-RLFS~g---- 87 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDG-----NIEIWNLSNNWFLEPVIHG--PEDRSI------ESLAWAEGG-RLFSSG---- 87 (691)
T ss_pred cceEEEEEeccCCceeeeccCC-----cEEEEccCCCceeeEEEec--CCCCce------eeEEEccCC-eEEeec----
Confidence 5688999999999999887765 678883 22 23344443 333334 899999544 454431
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCc
Q 003886 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 310 (789)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (789)
....|.-||+.+++.+.-. -.....+.+.+.+|.+..
T Consensus 88 ----------------------------------------~sg~i~EwDl~~lk~~~~~-d~~gg~IWsiai~p~~~~-- 124 (691)
T KOG2048|consen 88 ----------------------------------------LSGSITEWDLHTLKQKYNI-DSNGGAIWSIAINPENTI-- 124 (691)
T ss_pred ----------------------------------------CCceEEEEecccCceeEEe-cCCCcceeEEEeCCccce--
Confidence 2356888999888765441 122334566677777765
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCe---eecCCCCCccCcceecCCCCEEE
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV---VNLTESISSAFFPRFSPDGKFLV 387 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~Lt~~~~~~~~p~~SpDG~~la 387 (789)
++..+ .+ +.|+.++. ..+.+ +.|-...+.+...+|+|+|.+|+
T Consensus 125 --l~Igc-------------dd--Gvl~~~s~-----------------~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~ 170 (691)
T KOG2048|consen 125 --LAIGC-------------DD--GVLYDFSI-----------------GPDKITYKRSLMRQKSRVLSLSWNPTGTKIA 170 (691)
T ss_pred --EEeec-------------CC--ceEEEEec-----------------CCceEEEEeecccccceEEEEEecCCccEEE
Confidence 55443 22 25666665 33332 22333346688999999999998
Q ss_pred EEecCCCCCCCCccccceeEEeecCCCCC
Q 003886 388 FLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (789)
Q Consensus 388 ~~s~~~~~~~g~~~~~~~L~~~d~~~~~~ 416 (789)
-.+.+. .|.+||..++..
T Consensus 171 ~Gs~Dg-----------~Iriwd~~~~~t 188 (691)
T KOG2048|consen 171 GGSIDG-----------VIRIWDVKSGQT 188 (691)
T ss_pred ecccCc-----------eEEEEEcCCCce
Confidence 666442 488888776554
No 276
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=97.77 E-value=0.00072 Score=73.02 Aligned_cols=77 Identities=14% Similarity=0.126 Sum_probs=52.0
Q ss_pred CCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCc
Q 003886 360 EDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFP 439 (789)
Q Consensus 360 ~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~ 439 (789)
+.....+|.++.+.++..+|||||+++|.+..+. .|++++..+++.. +..+...
T Consensus 709 ~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg-----------~~rVy~Prs~e~p-v~Eg~gp-------------- 762 (1012)
T KOG1445|consen 709 NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDG-----------TLRVYEPRSREQP-VYEGKGP-------------- 762 (1012)
T ss_pred hhhhhheeccCcCceeEEEECCCCcceeeeecCc-----------eEEEeCCCCCCCc-cccCCCC--------------
Confidence 3445567888888899999999999999888653 5888887664432 2211110
Q ss_pred cccccCCCCCccccCCCEEEEEEEe
Q 003886 440 GLYSSSILSNPWLSDGCTMLLSSIW 464 (789)
Q Consensus 440 g~~~~~~~~~~ws~Dg~~l~~~~~~ 464 (789)
-...-.++.|.-||+.|++++-.
T Consensus 763 --vgtRgARi~wacdgr~viv~Gfd 785 (1012)
T KOG1445|consen 763 --VGTRGARILWACDGRIVIVVGFD 785 (1012)
T ss_pred --ccCcceeEEEEecCcEEEEeccc
Confidence 00122366799999988887643
No 277
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=97.77 E-value=0.00024 Score=72.64 Aligned_cols=111 Identities=15% Similarity=0.220 Sum_probs=74.4
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchh----h-HHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCC
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS----Y-SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~----~-~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~ 646 (789)
|+..+.++.+.-+ ..++...|++.-|.+....... . ........+.|..|+.+|||| .|.+-... +
T Consensus 120 D~~~IDt~~I~~~---~a~~~RWiL~s~GNg~~~E~~~~~~~~~~~~~~~ak~~~aNvl~fNYpG---Vg~S~G~~---s 190 (365)
T PF05677_consen 120 DGVKIDTMAIHQP---EAKPQRWILVSNGNGECYENRAMLDYKDDWIQRFAKELGANVLVFNYPG---VGSSTGPP---S 190 (365)
T ss_pred CCEEEEEEEeeCC---CCCCCcEEEEEcCChHHhhhhhhhccccHHHHHHHHHcCCcEEEECCCc---cccCCCCC---C
Confidence 7888998887522 3466778888877443211100 0 122334457899999999998 33321111 1
Q ss_pred CCcccHHHHHHHHHHHHHcC-CCCCccEEEEEcCccHHHHHHHHHhC
Q 003886 647 VGSQDVNDVLTAIDHVIDMG-LANPSKVTVVGGSHGGFLTTHLIGQA 692 (789)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~-~~d~~rv~l~G~S~GG~~a~~~~~~~ 692 (789)
. ..-+.|..++++||.++. .+.+++|++.|||.||.++..++.++
T Consensus 191 ~-~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~ 236 (365)
T PF05677_consen 191 R-KDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKE 236 (365)
T ss_pred H-HHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhc
Confidence 1 233788999999999743 37889999999999999998876654
No 278
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=97.76 E-value=0.00058 Score=73.41 Aligned_cols=107 Identities=18% Similarity=0.294 Sum_probs=66.2
Q ss_pred CCCCcEEEEEcCCCCCCCchhhHH--HHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHc-
Q 003886 589 CSCDPLIVVLHGGPHSVSLSSYSK--SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM- 665 (789)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~--~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~- 665 (789)
..|.|.||+=.=.+|+..-..|.. ........|+-|+.+-+.-.+. ..+.++|+..+...++++
T Consensus 66 ~~krP~vViDPRAGHGpGIGGFK~dSevG~AL~~GHPvYFV~F~p~P~-------------pgQTl~DV~~ae~~Fv~~V 132 (581)
T PF11339_consen 66 PTKRPFVVIDPRAGHGPGIGGFKPDSEVGVALRAGHPVYFVGFFPEPE-------------PGQTLEDVMRAEAAFVEEV 132 (581)
T ss_pred CCCCCeEEeCCCCCCCCCccCCCcccHHHHHHHcCCCeEEEEecCCCC-------------CCCcHHHHHHHHHHHHHHH
Confidence 457788777643333333333433 2333445688888877643222 234577877665544432
Q ss_pred --CCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEE-EeCCccch
Q 003886 666 --GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAA-ARNPLCNL 708 (789)
Q Consensus 666 --~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v-~~~pv~~~ 708 (789)
-.-+..|..|+|-+.||++++.+|+.+|+.+.-+| +.+|+.-+
T Consensus 133 ~~~hp~~~kp~liGnCQgGWa~~mlAA~~Pd~~gplvlaGaPlsyw 178 (581)
T PF11339_consen 133 AERHPDAPKPNLIGNCQGGWAAMMLAALRPDLVGPLVLAGAPLSYW 178 (581)
T ss_pred HHhCCCCCCceEEeccHHHHHHHHHHhcCcCccCceeecCCCcccc
Confidence 11233489999999999999999999999887554 45565443
No 279
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=97.75 E-value=0.00014 Score=81.04 Aligned_cols=111 Identities=22% Similarity=0.215 Sum_probs=68.8
Q ss_pred CcEEEEEcCCCCCCCchhhH--HHHHHHH-HCCcEEEEEcCCCCCCCCchhh------ccCCCCCCcccHHHHHHHHHHH
Q 003886 592 DPLIVVLHGGPHSVSLSSYS--KSLAFLS-SVGYSLLIVNYRGSLGFGEEAL------QSLPGKVGSQDVNDVLTAIDHV 662 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~--~~~~~la-~~Gy~V~~~d~rGs~G~G~~~~------~~~~~~~~~~~~~D~~~~i~~l 662 (789)
.|++|++-| -+.. ...+. ..+..|| +.|-.|+++++|- ||++.. +.+.-..-.+.++|+...++++
T Consensus 29 gpifl~~gg-E~~~-~~~~~~~~~~~~lA~~~~a~~v~lEHRy---YG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~ 103 (434)
T PF05577_consen 29 GPIFLYIGG-EGPI-EPFWINNGFMWELAKEFGALVVALEHRY---YGKSQPFGDLSTENLRYLTSEQALADLAYFIRYV 103 (434)
T ss_dssp SEEEEEE---SS-H-HHHHHH-HHHHHHHHHHTEEEEEE--TT---STTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHH
T ss_pred CCEEEEECC-CCcc-chhhhcCChHHHHHHHcCCcEEEeehhh---hcCCCCccccchhhHHhcCHHHHHHHHHHHHHHH
Confidence 788888844 3321 11111 1233444 6789999999996 565541 1122222234478888899998
Q ss_pred HHcC-CCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccc
Q 003886 663 IDMG-LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 707 (789)
Q Consensus 663 ~~~~-~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~ 707 (789)
..+- ..+..+++++|.||||.+++|+-.++|+.|.++++.++++.
T Consensus 104 ~~~~~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv~ 149 (434)
T PF05577_consen 104 KKKYNTAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSAPVQ 149 (434)
T ss_dssp HHHTTTGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET--CC
T ss_pred HHhhcCCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEeccceee
Confidence 8653 34667999999999999999999999999999999887654
No 280
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=97.75 E-value=0.00042 Score=68.68 Aligned_cols=265 Identities=13% Similarity=0.084 Sum_probs=138.4
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe---cCCceeEEEecCCCccccc----cC-CCcccceeecCCCCEEEEEe
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW---SQSQLEKEFHVPQTVHGSV----YA-DGWFEGISWNSDETLIAYVA 226 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~---~~~~~~~~~~~~~~~~g~v----~~-d~~~~~~~wSpDg~~la~~~ 226 (789)
.....+|||||..+|..+.+. +-.++.+. .....++........+-.| |- -+.+..+.|.|-+.-|+..+
T Consensus 114 ~cR~aafs~DG~lvATGsaD~--SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~s 191 (430)
T KOG0640|consen 114 PCRAAAFSPDGSLVATGSADA--SIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGS 191 (430)
T ss_pred ceeeeeeCCCCcEEEccCCcc--eEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEecc
Confidence 356778999999998754432 11222222 0111222111111111111 11 12347899999999888877
Q ss_pred ecCCCCCCCccCCCCC-CCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCC---CCccceEEE
Q 003886 227 EEPSPSKPTFSLGSTK-GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK---SLSVGQVVW 302 (789)
Q Consensus 227 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~---~~~~~~~~w 302 (789)
.+...+-..|....-+ ..+.+.+. .-.....|.|.+.-.+.+...+.+.++|+++-+.-.-. .|. ...+.++.+
T Consensus 192 rD~tvKlFDfsK~saKrA~K~~qd~-~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa-nPd~qht~ai~~V~Y 269 (430)
T KOG0640|consen 192 RDNTVKLFDFSKTSAKRAFKVFQDT-EPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA-NPDDQHTGAITQVRY 269 (430)
T ss_pred CCCeEEEEecccHHHHHHHHHhhcc-ceeeeEeecCCCceEEEecCCCceeEEeccceeEeeec-CcccccccceeEEEe
Confidence 7765442222211111 11111111 11223456666555667778899999999886543321 222 236779999
Q ss_pred eeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCee-ecC--CCCCccCccee
Q 003886 303 APLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-NLT--ESISSAFFPRF 379 (789)
Q Consensus 303 SPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~Lt--~~~~~~~~p~~ 379 (789)
|+.|+ |+.++. .+..|.++|= -++.+. .+. .+...+.+..|
T Consensus 270 s~t~~-----lYvTaS--------------kDG~IklwDG-----------------VS~rCv~t~~~AH~gsevcSa~F 313 (430)
T KOG0640|consen 270 SSTGS-----LYVTAS--------------KDGAIKLWDG-----------------VSNRCVRTIGNAHGGSEVCSAVF 313 (430)
T ss_pred cCCcc-----EEEEec--------------cCCcEEeecc-----------------ccHHHHHHHHhhcCCceeeeEEE
Confidence 99998 666662 2336777773 223322 221 22345888999
Q ss_pred cCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEE
Q 003886 380 SPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTML 459 (789)
Q Consensus 380 SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~ 459 (789)
+.|||+|+....+. -+++|.+.++.......+... .. ... ......|.....+++
T Consensus 314 tkn~kyiLsSG~DS-----------~vkLWEi~t~R~l~~YtGAg~-tg------rq~-------~rtqAvFNhtEdyVl 368 (430)
T KOG0640|consen 314 TKNGKYILSSGKDS-----------TVKLWEISTGRMLKEYTGAGT-TG------RQK-------HRTQAVFNHTEDYVL 368 (430)
T ss_pred ccCCeEEeecCCcc-----------eeeeeeecCCceEEEEecCCc-cc------chh-------hhhhhhhcCccceEE
Confidence 99999987555443 367777777654322111100 00 000 011334554445555
Q ss_pred EEEEeCCeEEEEEEECCCCcEEEecCC
Q 003886 460 LSSIWGSSQVIISVNVSSGELLRITPA 486 (789)
Q Consensus 460 ~~~~~~~~~~l~~~dl~tg~~~~lt~~ 486 (789)
|. ++....++.+|..++....+...
T Consensus 369 ~p--DEas~slcsWdaRtadr~~l~sl 393 (430)
T KOG0640|consen 369 FP--DEASNSLCSWDARTADRVALLSL 393 (430)
T ss_pred cc--ccccCceeeccccchhhhhhccc
Confidence 43 34455788888777766555443
No 281
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=97.75 E-value=0.00085 Score=70.68 Aligned_cols=228 Identities=13% Similarity=0.093 Sum_probs=137.4
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEec---CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWS---QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
+-+.++|-..++++... ..-..+|+ .+....+.+++--. -|..+.....+|||+.|+...+
T Consensus 422 VcAvtIS~~trhVyTgG------kgcVKVWdis~pg~k~PvsqLdcl~-----rdnyiRSckL~pdgrtLivGGe----- 485 (705)
T KOG0639|consen 422 VCAVTISNPTRHVYTGG------KGCVKVWDISQPGNKSPVSQLDCLN-----RDNYIRSCKLLPDGRTLIVGGE----- 485 (705)
T ss_pred EEEEEecCCcceeEecC------CCeEEEeeccCCCCCCccccccccC-----cccceeeeEecCCCceEEeccc-----
Confidence 55677888888875421 12345552 22222232322110 1223478899999999987533
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccC-CCCCCccceEEEeeCCCCCcc
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG-IPKSLSVGQVVWAPLNEGLHQ 311 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~-~~~~~~~~~~~wSPDg~~~~~ 311 (789)
...|-+||+..-..+.-.. +.........+.|||.+
T Consensus 486 ---------------------------------------astlsiWDLAapTprikaeltssapaCyALa~spDak---- 522 (705)
T KOG0639|consen 486 ---------------------------------------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAK---- 522 (705)
T ss_pred ---------------------------------------cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccc----
Confidence 2568889998765432111 12223455778999998
Q ss_pred EEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEec
Q 003886 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 391 (789)
Q Consensus 312 ~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~ 391 (789)
+.|..-.+ ..|.++|+. +...++++..+...+....+|+||..|. ...
T Consensus 523 -vcFsccsd--------------GnI~vwDLh----------------nq~~VrqfqGhtDGascIdis~dGtklW-TGG 570 (705)
T KOG0639|consen 523 -VCFSCCSD--------------GNIAVWDLH----------------NQTLVRQFQGHTDGASCIDISKDGTKLW-TGG 570 (705)
T ss_pred -eeeeeccC--------------CcEEEEEcc----------------cceeeecccCCCCCceeEEecCCCceee-cCC
Confidence 78877332 257788873 4456788888877788999999999874 332
Q ss_pred CCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003886 392 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (789)
Q Consensus 392 ~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (789)
- .+.+..||+..+...+. .+| .+.+.++...|.+..+.+- .. ..+++
T Consensus 571 l----------DntvRcWDlregrqlqq----------------hdF----~SQIfSLg~cP~~dWlavG-Me--ns~ve 617 (705)
T KOG0639|consen 571 L----------DNTVRCWDLREGRQLQQ----------------HDF----SSQIFSLGYCPTGDWLAVG-ME--NSNVE 617 (705)
T ss_pred C----------ccceeehhhhhhhhhhh----------------hhh----hhhheecccCCCccceeee-cc--cCcEE
Confidence 2 24588999877544211 011 1234566678888877553 22 33456
Q ss_pred EEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEe
Q 003886 472 SVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSS 507 (789)
Q Consensus 472 ~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s 507 (789)
++.....+..+|.....-+-..-|++.|++++-+.-
T Consensus 618 vlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGk 653 (705)
T KOG0639|consen 618 VLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGK 653 (705)
T ss_pred EEecCCccceeecccccEEEEEEecccCceeeecCc
Confidence 666545555566655543334568888888776543
No 282
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.71 E-value=0.0041 Score=63.62 Aligned_cols=108 Identities=13% Similarity=0.026 Sum_probs=60.3
Q ss_pred eEEEecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCC
Q 003886 98 AWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENE 177 (789)
Q Consensus 98 ~~~~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~ 177 (789)
....+..|+||+.+++... ......|+.... ++....+... .....|+|+|+|...++. +.. .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~------~~~~~~L~~~~~---~~~~~~~~~g------~~l~~PS~d~~g~~W~v~-~~~-~ 87 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSE------GDGGRSLYVGPA---GGPVRPVLTG------GSLTRPSWDPDGWVWTVD-DGS-G 87 (253)
T ss_pred cccceEECCCCCeEEEEEE------cCCCCEEEEEcC---CCcceeeccC------CccccccccCCCCEEEEE-cCC-C
Confidence 3556677899999999861 124557777653 2222222211 357789999996554443 322 1
Q ss_pred CCeEEEEecCCcee-EEEecCCCccccccCCCcccceeecCCCCEEEEEeecC
Q 003886 178 SPIQFELWSQSQLE-KEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 229 (789)
Q Consensus 178 ~~~~~~i~~~~~~~-~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~ 229 (789)
...++.-...++.. ..++.+.. .+. +..+.+||||+++|++.+..
T Consensus 88 ~~~~~~~~~~g~~~~~~v~~~~~-~~~------I~~l~vSpDG~RvA~v~~~~ 133 (253)
T PF10647_consen 88 GVRVVRDSASGTGEPVEVDWPGL-RGR------ITALRVSPDGTRVAVVVEDG 133 (253)
T ss_pred ceEEEEecCCCcceeEEeccccc-CCc------eEEEEECCCCcEEEEEEecC
Confidence 11122111223222 22222211 112 37999999999999998754
No 283
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=97.71 E-value=0.00091 Score=70.72 Aligned_cols=62 Identities=19% Similarity=0.229 Sum_probs=47.8
Q ss_pred CCCcccHHHHHHHHHHHHHcCC-C-CCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccc
Q 003886 646 KVGSQDVNDVLTAIDHVIDMGL-A-NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 707 (789)
Q Consensus 646 ~~~~~~~~D~~~~i~~l~~~~~-~-d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~ 707 (789)
++|-...-|++.|+.+++++-. . +.-++.++|+|+|||++..++--.|..|.+++-.++..-
T Consensus 157 N~GIMqAiD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~ 220 (403)
T PF11144_consen 157 NFGIMQAIDIINALLDLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYAL 220 (403)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCcccc
Confidence 3444456788888888888622 2 234899999999999999999888999999988776543
No 284
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.70 E-value=0.0013 Score=66.86 Aligned_cols=193 Identities=15% Similarity=0.132 Sum_probs=110.3
Q ss_pred cCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhh
Q 003886 271 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (789)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (789)
.+..|.++|-....+..|+ ....-.+..++|-|-+.. -+.++- +.|+ -||..+-.......
T Consensus 118 nddvVriy~ksst~pt~Lk-s~sQrnvtclawRPlsas----elavgC-----r~gI--------ciW~~s~tln~~r~- 178 (445)
T KOG2139|consen 118 NDDVVRIYDKSSTCPTKLK-SVSQRNVTCLAWRPLSAS----ELAVGC-----RAGI--------CIWSDSRTLNANRN- 178 (445)
T ss_pred cCcEEEEeccCCCCCceec-chhhcceeEEEeccCCcc----eeeeee-----ccee--------EEEEcCcccccccc-
Confidence 3456677777776666664 344456788999998876 444442 1121 24444421100000
Q ss_pred hhhhhcCCCCCCCeeecCCCC--CccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEe
Q 003886 351 ELELKESSSEDLPVVNLTESI--SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIP 428 (789)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~~--~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~ 428 (789)
. .--+...-++..+. ..+++.+|.+||..|+-.+-. ..+|.+||.+++...++...
T Consensus 179 ~------~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~g----------sssi~iWdpdtg~~~pL~~~------ 236 (445)
T KOG2139|consen 179 I------RMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFG----------SSSIMIWDPDTGQKIPLIPK------ 236 (445)
T ss_pred c------ccccccchhheeCCCCceeeEEEEcCCCCEEeecccC----------cceEEEEcCCCCCccccccc------
Confidence 0 00011122222232 358899999999998876643 35799999998877654310
Q ss_pred eeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeC
Q 003886 429 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSS 508 (789)
Q Consensus 429 ~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss 508 (789)
.. .++..+.|||||..| |.+.-++.-.||..+-.--+.+.++.. +.+...-++|+|..|+|+++.
T Consensus 237 --------gl-----gg~slLkwSPdgd~l-faAt~davfrlw~e~q~wt~erw~lgs-grvqtacWspcGsfLLf~~sg 301 (445)
T KOG2139|consen 237 --------GL-----GGFSLLKWSPDGDVL-FAATCDAVFRLWQENQSWTKERWILGS-GRVQTACWSPCGSFLLFACSG 301 (445)
T ss_pred --------CC-----CceeeEEEcCCCCEE-EEecccceeeeehhcccceecceeccC-CceeeeeecCCCCEEEEEEcC
Confidence 11 134467899999966 555666666677433211122223222 234456799999999999876
Q ss_pred CCCCCeEEEEeecc
Q 003886 509 PVDVPQVKYGYFVD 522 (789)
Q Consensus 509 ~~~p~~i~~~~~~~ 522 (789)
... +|.+....
T Consensus 302 sp~---lysl~f~~ 312 (445)
T KOG2139|consen 302 SPR---LYSLTFDG 312 (445)
T ss_pred Cce---EEEEeecC
Confidence 543 77776553
No 285
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=97.69 E-value=0.0012 Score=61.12 Aligned_cols=108 Identities=13% Similarity=0.112 Sum_probs=75.6
Q ss_pred CCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhh
Q 003886 646 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 725 (789)
Q Consensus 646 ~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~ 725 (789)
+|-....+|.++.++..+.. . ++.+.|++||.|+.++++++.+....++++.+++|..--...
T Consensus 37 ~w~~P~~~dWi~~l~~~v~a--~-~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVAppd~~~~~-------------- 99 (181)
T COG3545 37 DWEAPVLDDWIARLEKEVNA--A-EGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPPDVSRPE-------------- 99 (181)
T ss_pred CCCCCCHHHHHHHHHHHHhc--c-CCCeEEEEecccHHHHHHHHHhhhhccceEEEecCCCccccc--------------
Confidence 45556688888887766654 2 445999999999999999998877789999999986310000
Q ss_pred ccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 726 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
........++|.. ...+.-|.++++..+|+.|++++++.+.++.-
T Consensus 100 ---------------~~~~~~~tf~~~p-~~~lpfps~vvaSrnDp~~~~~~a~~~a~~wg 144 (181)
T COG3545 100 ---------------IRPKHLMTFDPIP-REPLPFPSVVVASRNDPYVSYEHAEDLANAWG 144 (181)
T ss_pred ---------------cchhhccccCCCc-cccCCCceeEEEecCCCCCCHHHHHHHHHhcc
Confidence 0001111122221 23455689999999999999999999988763
No 286
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=97.68 E-value=0.00045 Score=71.14 Aligned_cols=110 Identities=20% Similarity=0.291 Sum_probs=73.2
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHHHH---CCcEEEEEcCCCCCCCCchhhcc-CCCCCCcccHHHHHH-HHHHH---H
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSS---VGYSLLIVNYRGSLGFGEEALQS-LPGKVGSQDVNDVLT-AIDHV---I 663 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~---~Gy~V~~~d~rGs~G~G~~~~~~-~~~~~~~~~~~D~~~-~i~~l---~ 663 (789)
.++|+++.|.|+- ...|..+...|.+ ..|.|+++.+.|... ..... ...+.....++|+++ .++++ +
T Consensus 2 ~~li~~IPGNPGl--v~fY~~Fl~~L~~~l~~~~~i~~ish~Gh~~---~~~~~~~~~~~~~~sL~~QI~hk~~~i~~~~ 76 (266)
T PF10230_consen 2 RPLIVFIPGNPGL--VEFYEEFLSALYEKLNPQFEILGISHAGHST---SPSNSKFSPNGRLFSLQDQIEHKIDFIKELI 76 (266)
T ss_pred cEEEEEECCCCCh--HHHHHHHHHHHHHhCCCCCeeEEecCCCCcC---CcccccccCCCCccCHHHHHHHHHHHHHHHh
Confidence 5789999999984 5566667776664 479999999987432 22110 001122334555444 33333 3
Q ss_pred HcCCCCCccEEEEEcCccHHHHHHHHHhCC---CceeEEEEeCCcc
Q 003886 664 DMGLANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLC 706 (789)
Q Consensus 664 ~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p---~~~~a~v~~~pv~ 706 (789)
........++.++|||.|+|+++.++-+.+ .+++.+++.-|..
T Consensus 77 ~~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi 122 (266)
T PF10230_consen 77 PQKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTI 122 (266)
T ss_pred hhhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCcc
Confidence 321115688999999999999999999988 6788888888754
No 287
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=97.68 E-value=0.00033 Score=70.06 Aligned_cols=103 Identities=17% Similarity=0.305 Sum_probs=60.7
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHH--------HHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHH
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFL--------SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVI 663 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~l--------a~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~ 663 (789)
...|||+||..++ ...+......+ ....+.++.+|+.... . ...+..-....+-+..+++++.
T Consensus 4 g~pVlFIhG~~Gs--~~q~rsl~~~~~~~~~~~~~~~~~d~ft~df~~~~---s----~~~g~~l~~q~~~~~~~i~~i~ 74 (225)
T PF07819_consen 4 GIPVLFIHGNAGS--YKQVRSLASELQRKALLNDNSSHFDFFTVDFNEEL---S----AFHGRTLQRQAEFLAEAIKYIL 74 (225)
T ss_pred CCEEEEECcCCCC--HhHHHHHHHHHhhhhhhccCccceeEEEeccCccc---c----ccccccHHHHHHHHHHHHHHHH
Confidence 4568899996554 22333222222 1234788999985311 1 1111111122344555666665
Q ss_pred HcC---CCCCccEEEEEcCccHHHHHHHHHhCC---CceeEEEEeC
Q 003886 664 DMG---LANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARN 703 (789)
Q Consensus 664 ~~~---~~d~~rv~l~G~S~GG~~a~~~~~~~p---~~~~a~v~~~ 703 (789)
+.. ....++|.|+||||||.++-.++...+ +.++.+|..+
T Consensus 75 ~~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~ 120 (225)
T PF07819_consen 75 ELYKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLG 120 (225)
T ss_pred HhhhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEc
Confidence 542 357899999999999999988877543 3677777655
No 288
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.66 E-value=0.0013 Score=72.59 Aligned_cols=154 Identities=14% Similarity=0.199 Sum_probs=100.1
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
..+.+.+.+||+++|+++.+. ++..+| ..|+..+..- ....+++ ....++|.|..+|....+...
T Consensus 63 d~ita~~l~~d~~~L~~a~rs-----~llrv~~L~tgk~irswK--a~He~Pv------i~ma~~~~g~LlAtggaD~~v 129 (775)
T KOG0319|consen 63 DEITALALTPDEEVLVTASRS-----QLLRVWSLPTGKLIRSWK--AIHEAPV------ITMAFDPTGTLLATGGADGRV 129 (775)
T ss_pred hhhheeeecCCccEEEEeecc-----ceEEEEEcccchHhHhHh--hccCCCe------EEEEEcCCCceEEeccccceE
Confidence 346788999999999887665 478888 4453333221 1122333 578899999777776655543
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCccc--ccCCccCceEEEEEccCCce-EeccCCCCCCccceEEEeeCCCC
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGE--TYAGKRQPSLFVININSGEV-QAVKGIPKSLSVGQVVWAPLNEG 308 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~--~~~~~~~~~l~v~d~~~g~~-~~l~~~~~~~~~~~~~wSPDg~~ 308 (789)
+.|+.........+++++...-...|.|+|.. .+++..+..+.+||+.++.. ..+. ......+.+..+++|+..
T Consensus 130 --~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~-~~H~S~vtsL~~~~d~~~ 206 (775)
T KOG0319|consen 130 --KVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTM-ILHKSAVTSLAFSEDSLE 206 (775)
T ss_pred --EEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHH-HhhhhheeeeeeccCCce
Confidence 45654444444555565555556677787743 35666788999999986654 1110 222346778999999998
Q ss_pred CccEEEEEeecCCceeeeeeeeccCCcceEEEec
Q 003886 309 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 342 (789)
Q Consensus 309 ~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~ 342 (789)
+++++ |+.-++++|+
T Consensus 207 ----~ls~~---------------RDkvi~vwd~ 221 (775)
T KOG0319|consen 207 ----LLSVG---------------RDKVIIVWDL 221 (775)
T ss_pred ----EEEec---------------cCcEEEEeeh
Confidence 88887 4446778887
No 289
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.66 E-value=0.0037 Score=63.91 Aligned_cols=178 Identities=17% Similarity=0.178 Sum_probs=92.2
Q ss_pred CceEEEEEccCCceEeccCCCCCCccceEEEe-eCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhh
Q 003886 272 QPSLFVININSGEVQAVKGIPKSLSVGQVVWA-PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (789)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wS-PDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (789)
...|+.++..+++.+.+. .+. ....++. +||+ |+++. . ..+.++|+
T Consensus 21 ~~~i~~~~~~~~~~~~~~-~~~---~~G~~~~~~~g~-----l~v~~-~---------------~~~~~~d~-------- 67 (246)
T PF08450_consen 21 GGRIYRVDPDTGEVEVID-LPG---PNGMAFDRPDGR-----LYVAD-S---------------GGIAVVDP-------- 67 (246)
T ss_dssp TTEEEEEETTTTEEEEEE-SSS---EEEEEEECTTSE-----EEEEE-T---------------TCEEEEET--------
T ss_pred CCEEEEEECCCCeEEEEe-cCC---CceEEEEccCCE-----EEEEE-c---------------CceEEEec--------
Confidence 368999999999877653 222 4455666 6644 44443 1 13555576
Q ss_pred hhhhhcCCCCCCCeeecCCC------CCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCccccee
Q 003886 351 ELELKESSSEDLPVVNLTES------ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV 424 (789)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~------~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~ 424 (789)
++++.+.+... .......++.|||+ |++.......... .....||+++.. ++...+..+
T Consensus 68 ---------~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~--~~~g~v~~~~~~-~~~~~~~~~-- 132 (246)
T PF08450_consen 68 ---------DTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASG--IDPGSVYRIDPD-GKVTVVADG-- 132 (246)
T ss_dssp ---------TTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTC--GGSEEEEEEETT-SEEEEEEEE--
T ss_pred ---------CCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCcccc--ccccceEEECCC-CeEEEEecC--
Confidence 55555544332 22355678999999 6666554321110 011569999876 332211100
Q ss_pred eEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECC--CCcEE---EecC-CCCC--ceeEEee
Q 003886 425 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS--SGELL---RITP-AESN--FSWSLLT 496 (789)
Q Consensus 425 ~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~--tg~~~---~lt~-~~~~--~~~~~~s 496 (789)
+ .+ ...++|+||++.||++....+ .||+++++ ++++. .+.. .... .....++
T Consensus 133 -----~------~~-------pNGi~~s~dg~~lyv~ds~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD 192 (246)
T PF08450_consen 133 -----L------GF-------PNGIAFSPDGKTLYVADSFNG--RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVD 192 (246)
T ss_dssp -----E------SS-------EEEEEEETTSSEEEEEETTTT--EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEB
T ss_pred -----c------cc-------ccceEECCcchheeecccccc--eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEc
Confidence 0 11 236789999999988654444 47777664 44222 2211 1111 2223455
Q ss_pred ecCCEEEEEEeCCCCCCeEEEEeec
Q 003886 497 LDGDNIIAVSSSPVDVPQVKYGYFV 521 (789)
Q Consensus 497 ~dg~~l~~~~ss~~~p~~i~~~~~~ 521 (789)
.+|+ |+.+.. ....|++++..
T Consensus 193 ~~G~-l~va~~---~~~~I~~~~p~ 213 (246)
T PF08450_consen 193 SDGN-LWVADW---GGGRIVVFDPD 213 (246)
T ss_dssp TTS--EEEEEE---TTTEEEEEETT
T ss_pred CCCC-EEEEEc---CCCEEEEECCC
Confidence 5554 333333 33457777755
No 290
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=97.66 E-value=0.00052 Score=76.38 Aligned_cols=131 Identities=16% Similarity=0.169 Sum_probs=82.4
Q ss_pred CeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHH----------------HHHHHHHCCcEEEEEcCC-CCCCC
Q 003886 573 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK----------------SLAFLSSVGYSLLIVNYR-GSLGF 635 (789)
Q Consensus 573 g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~----------------~~~~la~~Gy~V~~~d~r-Gs~G~ 635 (789)
+..+..|++..++ ..+..|+|++++|||++........ +..-|.+. ..++.+|.+ | .|+
T Consensus 60 ~~~lFyw~~~s~~--~~~~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~~-~~~l~iDqP~G-~G~ 135 (462)
T PTZ00472 60 DKHYFYWAFGPRN--GNPEAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNNE-AYVIYVDQPAG-VGF 135 (462)
T ss_pred CceEEEEEEEcCC--CCCCCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCcccccc-cCeEEEeCCCC-cCc
Confidence 4568888887663 3457899999999999643221100 00012222 578888864 5 555
Q ss_pred CchhhccCCCCCCcccHHHHHHHHHHHHHc-CCCCCccEEEEEcCccHHHHHHHHHhC----------CCceeEEEEeCC
Q 003886 636 GEEALQSLPGKVGSQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQA----------PDKFVAAAARNP 704 (789)
Q Consensus 636 G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~~d~~rv~l~G~S~GG~~a~~~~~~~----------p~~~~a~v~~~p 704 (789)
+........ ..-....+|+.++++.+.++ +.....++.|+|+||||..+..++.+- .-.+|++++.+|
T Consensus 136 S~~~~~~~~-~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~IGNg 214 (462)
T PTZ00472 136 SYADKADYD-HNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLAVGNG 214 (462)
T ss_pred ccCCCCCCC-CChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEEEEecc
Confidence 543211110 11122357777777766654 445568999999999999887776642 124789999999
Q ss_pred ccch
Q 003886 705 LCNL 708 (789)
Q Consensus 705 v~~~ 708 (789)
.++.
T Consensus 215 ~~dp 218 (462)
T PTZ00472 215 LTDP 218 (462)
T ss_pred ccCh
Confidence 8876
No 291
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=97.65 E-value=0.033 Score=54.68 Aligned_cols=147 Identities=14% Similarity=0.147 Sum_probs=92.7
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
+.+.....+-+.++++.-+.. +-..+| ..|+.......+..+ ..+.||++|+.+++..+..-.
T Consensus 53 GavW~~Did~~s~~liTGSAD-----~t~kLWDv~tGk~la~~k~~~~V----------k~~~F~~~gn~~l~~tD~~mg 117 (327)
T KOG0643|consen 53 GAVWCCDIDWDSKHLITGSAD-----QTAKLWDVETGKQLATWKTNSPV----------KRVDFSFGGNLILASTDKQMG 117 (327)
T ss_pred ceEEEEEecCCcceeeecccc-----ceeEEEEcCCCcEEEEeecCCee----------EEEeeccCCcEEEEEehhhcC
Confidence 457777788888888765433 346677 355555555554444 689999999999988664310
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEcc-------CCc-eEeccCCCCCCccceEEEe
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ-------SGE-VQAVKGIPKSLSVGQVVWA 303 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~-------~g~-~~~l~~~~~~~~~~~~~wS 303 (789)
....|.++|+. +.+ ...+ ...+..+..+.|+
T Consensus 118 ---------------------------------------~~~~v~~fdi~~~~~~~~s~ep~~kI--~t~~skit~a~Wg 156 (327)
T KOG0643|consen 118 ---------------------------------------YTCFVSVFDIRDDSSDIDSEEPYLKI--PTPDSKITSALWG 156 (327)
T ss_pred ---------------------------------------cceEEEEEEccCChhhhcccCceEEe--cCCccceeeeeec
Confidence 12445566654 333 3344 2233567788999
Q ss_pred eCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCC-Ceee-cCCCCCccCcceecC
Q 003886 304 PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVN-LTESISSAFFPRFSP 381 (789)
Q Consensus 304 PDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~-Lt~~~~~~~~p~~Sp 381 (789)
|-|+. |+..- ....|-.+|+ .++ +... -..+...+...++||
T Consensus 157 ~l~~~----ii~Gh---------------e~G~is~~da-----------------~~g~~~v~s~~~h~~~Ind~q~s~ 200 (327)
T KOG0643|consen 157 PLGET----IIAGH---------------EDGSISIYDA-----------------RTGKELVDSDEEHSSKINDLQFSR 200 (327)
T ss_pred ccCCE----EEEec---------------CCCcEEEEEc-----------------ccCceeeechhhhccccccccccC
Confidence 99997 76654 2236778887 333 2222 233445688999999
Q ss_pred CCCEEEEEecC
Q 003886 382 DGKFLVFLSAK 392 (789)
Q Consensus 382 DG~~la~~s~~ 392 (789)
|..+++..+.+
T Consensus 201 d~T~FiT~s~D 211 (327)
T KOG0643|consen 201 DRTYFITGSKD 211 (327)
T ss_pred CcceEEecccC
Confidence 99977665544
No 292
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=97.65 E-value=0.00079 Score=72.52 Aligned_cols=85 Identities=12% Similarity=0.177 Sum_probs=56.4
Q ss_pred HHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHh
Q 003886 612 KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ 691 (789)
Q Consensus 612 ~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~ 691 (789)
...+.|.. |+.|++.|..- ++. .+..-+...++|.+..+..+++. +..+ +.++|+|+||.+++.+++.
T Consensus 121 S~V~~Ll~-g~dVYl~DW~~-p~~-------vp~~~~~f~ldDYi~~l~~~i~~--~G~~-v~l~GvCqgG~~~laa~Al 188 (406)
T TIGR01849 121 STVEALLP-DHDVYITDWVN-ARM-------VPLSAGKFDLEDYIDYLIEFIRF--LGPD-IHVIAVCQPAVPVLAAVAL 188 (406)
T ss_pred HHHHHHhC-CCcEEEEeCCC-CCC-------CchhcCCCCHHHHHHHHHHHHHH--hCCC-CcEEEEchhhHHHHHHHHH
Confidence 35677888 99999999853 111 11122334466666555554444 3344 9999999999997766654
Q ss_pred C-----CCceeEEEEeCCccch
Q 003886 692 A-----PDKFVAAAARNPLCNL 708 (789)
Q Consensus 692 ~-----p~~~~a~v~~~pv~~~ 708 (789)
. |.+++.+++..+..|.
T Consensus 189 ~a~~~~p~~~~sltlm~~PID~ 210 (406)
T TIGR01849 189 MAENEPPAQPRSMTLMGGPIDA 210 (406)
T ss_pred HHhcCCCCCcceEEEEecCccC
Confidence 3 5679999988877665
No 293
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.63 E-value=0.00049 Score=69.82 Aligned_cols=213 Identities=14% Similarity=0.062 Sum_probs=128.6
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCc-eeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ-LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
..+...+++-.|++|+..+..- . ..+|+-.+ .+.+-...+..| ..+.+.+-|-|.+|+..+.+.+..
T Consensus 151 ~sv~di~~~a~Gk~l~tcSsDl--~---~~LWd~~~~~~c~ks~~gh~h-------~vS~V~f~P~gd~ilS~srD~tik 218 (406)
T KOG0295|consen 151 DSVFDISFDASGKYLATCSSDL--S---AKLWDFDTFFRCIKSLIGHEH-------GVSSVFFLPLGDHILSCSRDNTIK 218 (406)
T ss_pred cceeEEEEecCccEEEecCCcc--c---hhheeHHHHHHHHHHhcCccc-------ceeeEEEEecCCeeeeccccccee
Confidence 3478899999999998766542 1 44553222 111111111111 127899999999999887776653
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccE
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 312 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~ 312 (789)
.|....+-..+....+..|..-..-..|+--..+......|-+|-+++++...+. ......+.-++|.|+.... .
T Consensus 219 --~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~l-R~hEh~vEci~wap~~~~~--~ 293 (406)
T KOG0295|consen 219 --AWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAEL-REHEHPVECIAWAPESSYP--S 293 (406)
T ss_pred --EEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhh-hccccceEEEEecccccCc--c
Confidence 4555455555666677777765555556433334455678999999888554431 2223355667787764320 0
Q ss_pred EEEEeecCCceeeeeee--eccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeecCCCCCccCcceecCCCCEEEEE
Q 003886 313 LVFVGWSSETRKLGIKY--CYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFL 389 (789)
Q Consensus 313 l~f~~~~~~~~~~g~~~--~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~la~~ 389 (789)
|-+.+-.. .|..+ .-.++..|..+|+ .++. +-.|-.+...+...+|||-||+|+..
T Consensus 294 i~~at~~~----~~~~~l~s~SrDktIk~wdv-----------------~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sc 352 (406)
T KOG0295|consen 294 ISEATGST----NGGQVLGSGSRDKTIKIWDV-----------------STGMCLFTLVGHDNWVRGVAFSPGGKYILSC 352 (406)
T ss_pred hhhccCCC----CCccEEEeecccceEEEEec-----------------cCCeEEEEEecccceeeeeEEcCCCeEEEEE
Confidence 11111100 01111 1134557888887 4454 34677777789999999999999877
Q ss_pred ecCCCCCCCCccccceeEEeecCCCC
Q 003886 390 SAKSSVDSGAHSATDSLHRIDWPTNG 415 (789)
Q Consensus 390 s~~~~~~~g~~~~~~~L~~~d~~~~~ 415 (789)
..+. .|.+||+..+.
T Consensus 353 aDDk-----------tlrvwdl~~~~ 367 (406)
T KOG0295|consen 353 ADDK-----------TLRVWDLKNLQ 367 (406)
T ss_pred ecCC-----------cEEEEEeccce
Confidence 7654 59999997754
No 294
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=97.63 E-value=0.00031 Score=74.58 Aligned_cols=74 Identities=24% Similarity=0.304 Sum_probs=51.3
Q ss_pred CCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCC
Q 003886 370 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 449 (789)
Q Consensus 370 ~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~ 449 (789)
..+.+....|||||++||.++.+. -|.++|..+.+...+-. -|..++.-+
T Consensus 289 ~~g~in~f~FS~DG~~LA~VSqDG-----------fLRvF~fdt~eLlg~mk-------------------SYFGGLLCv 338 (636)
T KOG2394|consen 289 GEGSINEFAFSPDGKYLATVSQDG-----------FLRIFDFDTQELLGVMK-------------------SYFGGLLCV 338 (636)
T ss_pred ccccccceeEcCCCceEEEEecCc-----------eEEEeeccHHHHHHHHH-------------------hhccceEEE
Confidence 345678889999999999999774 37788877744321111 144456778
Q ss_pred ccccCCCEEEEEEEeCCeEEEEEEE
Q 003886 450 PWLSDGCTMLLSSIWGSSQVIISVN 474 (789)
Q Consensus 450 ~ws~Dg~~l~~~~~~~~~~~l~~~d 474 (789)
+||||||+| +++..+.-..+|.+.
T Consensus 339 cWSPDGKyI-vtGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 339 CWSPDGKYI-VTGGEDDLVTVWSFE 362 (636)
T ss_pred EEcCCccEE-EecCCcceEEEEEec
Confidence 999999966 455555566777764
No 295
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=97.63 E-value=0.0001 Score=77.95 Aligned_cols=113 Identities=15% Similarity=0.203 Sum_probs=63.3
Q ss_pred CCCCcEEEEEcCCCCCCCchhhHH-HHHHH-HH--CCcEEEEEcCCC-CCCCCchhhccCCCCCCcccHHHHHHHHHHHH
Q 003886 589 CSCDPLIVVLHGGPHSVSLSSYSK-SLAFL-SS--VGYSLLIVNYRG-SLGFGEEALQSLPGKVGSQDVNDVLTAIDHVI 663 (789)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~-~~~~l-a~--~Gy~V~~~d~rG-s~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~ 663 (789)
+.+.|++|++||.........|.. ....+ .. ..+.|+++|+.. +.. .+..+.. ....--..+...+..|.
T Consensus 68 n~~~pt~iiiHGw~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a~~---~Y~~a~~--n~~~vg~~la~~l~~L~ 142 (331)
T PF00151_consen 68 NPSKPTVIIIHGWTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGASN---NYPQAVA--NTRLVGRQLAKFLSFLI 142 (331)
T ss_dssp -TTSEEEEEE--TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHHSS----HHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEcCcCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhccc---cccchhh--hHHHHHHHHHHHHHHHH
Confidence 457899999999766542334433 33434 34 589999999862 111 1110000 00001234455667777
Q ss_pred HcCCCCCccEEEEEcCccHHHHHHHHHhCCC--ceeEEEEeCCcc
Q 003886 664 DMGLANPSKVTVVGGSHGGFLTTHLIGQAPD--KFVAAAARNPLC 706 (789)
Q Consensus 664 ~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~--~~~a~v~~~pv~ 706 (789)
+...++.++|.|+|||+||.++..+...... ++..++...|.-
T Consensus 143 ~~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPAg 187 (331)
T PF00151_consen 143 NNFGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPAG 187 (331)
T ss_dssp HHH---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B-
T ss_pred hhcCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCccc
Confidence 5445889999999999999999998887665 788888877743
No 296
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=97.63 E-value=0.00023 Score=71.76 Aligned_cols=126 Identities=14% Similarity=0.055 Sum_probs=78.1
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCC----cEEEEEcCCCCCCCCchhhccCCCCCCccc
Q 003886 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG----YSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (789)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G----y~V~~~d~rGs~G~G~~~~~~~~~~~~~~~ 651 (789)
....++.|+++....++|+++++||--+.....- ......|...| -++|.+|+--..-+.+++ + .. ..-
T Consensus 82 ~~~vv~lppgy~~~~k~pvl~~~DG~~~~~~g~i-~~~~dsli~~g~i~pai~vgid~~d~~~R~~~~----~-~n-~~~ 154 (299)
T COG2382 82 RRRVVYLPPGYNPLEKYPVLYLQDGQDWFRSGRI-PRILDSLIAAGEIPPAILVGIDYIDVKKRREEL----H-CN-EAY 154 (299)
T ss_pred eeEEEEeCCCCCccccccEEEEeccHHHHhcCCh-HHHHHHHHHcCCCCCceEEecCCCCHHHHHHHh----c-cc-HHH
Confidence 4566888999989999999999998222111111 12334455544 678888863110011111 1 00 001
Q ss_pred HHHHHH-HHHHHHHc-C-CCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccch
Q 003886 652 VNDVLT-AIDHVIDM-G-LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 708 (789)
Q Consensus 652 ~~D~~~-~i~~l~~~-~-~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~ 708 (789)
...+.. .+=++.++ + .-+.++-+|+|.|+||..+++++.++|++|..++..+|..++
T Consensus 155 ~~~L~~eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~~ 214 (299)
T COG2382 155 WRFLAQELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFWW 214 (299)
T ss_pred HHHHHHHhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeeccCCcccc
Confidence 222222 23333332 1 135677899999999999999999999999999999998764
No 297
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.58 E-value=0.0056 Score=62.59 Aligned_cols=141 Identities=19% Similarity=0.237 Sum_probs=91.6
Q ss_pred ceEEEEEccCCceEec-cCCCCCCccceEEEeeC--CCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchh
Q 003886 273 PSLFVININSGEVQAV-KGIPKSLSVGQVVWAPL--NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 349 (789)
Q Consensus 273 ~~l~v~d~~~g~~~~l-~~~~~~~~~~~~~wSPD--g~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 349 (789)
.+||++|+.+-++..- ..++ +-..+-.++||. +.+ |+|-+.. ...+|+++|+.
T Consensus 106 e~IyIydI~~MklLhTI~t~~-~n~~gl~AlS~n~~n~y----lAyp~s~-------------t~GdV~l~d~~------ 161 (391)
T KOG2110|consen 106 ESIYIYDIKDMKLLHTIETTP-PNPKGLCALSPNNANCY----LAYPGST-------------TSGDVVLFDTI------ 161 (391)
T ss_pred ccEEEEecccceeehhhhccC-CCccceEeeccCCCCce----EEecCCC-------------CCceEEEEEcc------
Confidence 3599999988765432 2121 122334455554 446 8886522 24478898872
Q ss_pred hhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEee
Q 003886 350 SELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 429 (789)
Q Consensus 350 ~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~ 429 (789)
+-.....+..+.+.....+|||||+.||..|.+++ -|.++..+.|++.. +.
T Consensus 162 ----------nl~~v~~I~aH~~~lAalafs~~G~llATASeKGT----------VIRVf~v~~G~kl~------eF--- 212 (391)
T KOG2110|consen 162 ----------NLQPVNTINAHKGPLAALAFSPDGTLLATASEKGT----------VIRVFSVPEGQKLY------EF--- 212 (391)
T ss_pred ----------cceeeeEEEecCCceeEEEECCCCCEEEEeccCce----------EEEEEEcCCccEee------ee---
Confidence 23344556678888999999999999999998753 37777777765421 11
Q ss_pred eeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEEC
Q 003886 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 475 (789)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl 475 (789)
-.|.++.++.+++|+||+..|. .++..+..+++.++.
T Consensus 213 --------RRG~~~~~IySL~Fs~ds~~L~-~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 213 --------RRGTYPVSIYSLSFSPDSQFLA-ASSNTETVHIFKLEK 249 (391)
T ss_pred --------eCCceeeEEEEEEECCCCCeEE-EecCCCeEEEEEecc
Confidence 1234556778899999998554 444556778888774
No 298
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.57 E-value=0.0023 Score=70.82 Aligned_cols=238 Identities=14% Similarity=0.072 Sum_probs=124.6
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~ 234 (789)
.+....|-|-+++|+..... |.-++|.+.... ....+. .+.|. ++.++-+||++..+..+.+.+..-+
T Consensus 414 y~l~~~Fvpgd~~Iv~G~k~--Gel~vfdlaS~~-l~Eti~---AHdga------IWsi~~~pD~~g~vT~saDktVkfW 481 (888)
T KOG0306|consen 414 YILASKFVPGDRYIVLGTKN--GELQVFDLASAS-LVETIR---AHDGA------IWSISLSPDNKGFVTGSADKTVKFW 481 (888)
T ss_pred cEEEEEecCCCceEEEeccC--CceEEEEeehhh-hhhhhh---ccccc------eeeeeecCCCCceEEecCCcEEEEE
Confidence 35556677777777654433 333444444221 111111 22223 3889999999999988777643311
Q ss_pred CccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEE
Q 003886 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 314 (789)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~ 314 (789)
.|... .+. +..+-.++.+.-.....+ ...+-.+.+||||+. |+
T Consensus 482 df~l~-------------------~~~---------~gt~~k~lsl~~~rtLel-----~ddvL~v~~Spdgk~----La 524 (888)
T KOG0306|consen 482 DFKLV-------------------VSV---------PGTQKKVLSLKHTRTLEL-----EDDVLCVSVSPDGKL----LA 524 (888)
T ss_pred eEEEE-------------------ecc---------CcccceeeeeccceEEec-----cccEEEEEEcCCCcE----EE
Confidence 11100 000 000000122221111122 224557899999997 66
Q ss_pred EEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCC
Q 003886 315 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSS 394 (789)
Q Consensus 315 f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~ 394 (789)
..-- +....+|.+|. -.-...|.++.-.+.....|||++.|+..+.+.+
T Consensus 525 VsLL-------------dnTVkVyflDt------------------lKFflsLYGHkLPV~smDIS~DSklivTgSADKn 573 (888)
T KOG0306|consen 525 VSLL-------------DNTVKVYFLDT------------------LKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKN 573 (888)
T ss_pred EEec-------------cCeEEEEEecc------------------eeeeeeecccccceeEEeccCCcCeEEeccCCCc
Confidence 5542 23457888873 2334567777778899999999999998887652
Q ss_pred CCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEE
Q 003886 395 VDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 474 (789)
Q Consensus 395 ~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~d 474 (789)
+.+|-++=|.-..-.-. ++.++..+.|.|+. +++|+...++... .+|
T Consensus 574 -----------VKiWGLdFGDCHKS~fA-------------------HdDSvm~V~F~P~~-~~FFt~gKD~kvK--qWD 620 (888)
T KOG0306|consen 574 -----------VKIWGLDFGDCHKSFFA-------------------HDDSVMSVQFLPKT-HLFFTCGKDGKVK--QWD 620 (888)
T ss_pred -----------eEEeccccchhhhhhhc-------------------ccCceeEEEEcccc-eeEEEecCcceEE--eec
Confidence 44443332222110001 11244566788865 5878876665444 344
Q ss_pred CCCC-cEEEecCCCCCceeEEeeecCCEEEEE
Q 003886 475 VSSG-ELLRITPAESNFSWSLLTLDGDNIIAV 505 (789)
Q Consensus 475 l~tg-~~~~lt~~~~~~~~~~~s~dg~~l~~~ 505 (789)
-+.= .++.+......+.-...+++|++++..
T Consensus 621 g~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~ 652 (888)
T KOG0306|consen 621 GEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSS 652 (888)
T ss_pred hhhhhhheeeccchheeeeeEEcCCCCeEEec
Confidence 3221 223333333334445677788765543
No 299
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.57 E-value=0.00049 Score=72.99 Aligned_cols=59 Identities=17% Similarity=0.362 Sum_probs=41.0
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEE-ecCCCccccccCCCcccceeecCCCCEEEEEee
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEF-HVPQTVHGSVYADGWFEGISWNSDETLIAYVAE 227 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~-~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~ 227 (789)
+.+.+-.|||||.-|+.+.+++ ++.+| ..|-++-.+ +....+ .+++|.|++..|+|...
T Consensus 105 ~A~~~gRW~~dGtgLlt~GEDG-----~iKiWSrsGMLRStl~Q~~~~v----------~c~~W~p~S~~vl~c~g 165 (737)
T KOG1524|consen 105 AAISSGRWSPDGAGLLTAGEDG-----VIKIWSRSGMLRSTVVQNEESI----------RCARWAPNSNSIVFCQG 165 (737)
T ss_pred hhhhhcccCCCCceeeeecCCc-----eEEEEeccchHHHHHhhcCcee----------EEEEECCCCCceEEecC
Confidence 4467778999999998875554 88999 444332211 222223 78999999999999743
No 300
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.57 E-value=0.004 Score=65.77 Aligned_cols=232 Identities=12% Similarity=0.053 Sum_probs=132.5
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
..+++..|--||+.+|-.-. .|.-++|.+....-.+.+-.....+ ....|+|++..++..+.++
T Consensus 69 ~~v~s~~fR~DG~LlaaGD~--sG~V~vfD~k~r~iLR~~~ah~apv----------~~~~f~~~d~t~l~s~sDd---- 132 (487)
T KOG0310|consen 69 DVVYSVDFRSDGRLLAAGDE--SGHVKVFDMKSRVILRQLYAHQAPV----------HVTKFSPQDNTMLVSGSDD---- 132 (487)
T ss_pred cceeEEEeecCCeEEEccCC--cCcEEEeccccHHHHHHHhhccCce----------eEEEecccCCeEEEecCCC----
Confidence 35788899999998875322 1333333311100111111111122 5688999988877665543
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEE
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (789)
..+..||+.+..+ ++.-......+...+|+|-... |
T Consensus 133 ---------------------------------------~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~h----i 168 (487)
T KOG0310|consen 133 ---------------------------------------KVVKYWDLSTAYV-QAELSGHTDYVRCGDISPANDH----I 168 (487)
T ss_pred ---------------------------------------ceEEEEEcCCcEE-EEEecCCcceeEeeccccCCCe----E
Confidence 3466788888776 3321333447788899999998 9
Q ss_pred EEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCC
Q 003886 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (789)
Q Consensus 314 ~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~ 393 (789)
++++.- +..|..+|+.. .+.....| ++...+....+-|.|..|+..+.
T Consensus 169 vvtGsY--------------Dg~vrl~DtR~---------------~~~~v~el-nhg~pVe~vl~lpsgs~iasAgG-- 216 (487)
T KOG0310|consen 169 VVTGSY--------------DGKVRLWDTRS---------------LTSRVVEL-NHGCPVESVLALPSGSLIASAGG-- 216 (487)
T ss_pred EEecCC--------------CceEEEEEecc---------------CCceeEEe-cCCCceeeEEEcCCCCEEEEcCC--
Confidence 988721 22466666521 33333333 33446788889999998876552
Q ss_pred CCCCCCccccceeEEeecCCCCCCCcccc-eeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003886 394 SVDSGAHSATDSLHRIDWPTNGNFSSLEK-IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (789)
Q Consensus 394 ~~~~g~~~~~~~L~~~d~~~~~~~~~t~~-~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (789)
+++.+||+.+|+....... ... .+..+.+..|+++| +++.-++..++|.
T Consensus 217 ----------n~vkVWDl~~G~qll~~~~~H~K-------------------tVTcL~l~s~~~rL-lS~sLD~~VKVfd 266 (487)
T KOG0310|consen 217 ----------NSVKVWDLTTGGQLLTSMFNHNK-------------------TVTCLRLASDSTRL-LSGSLDRHVKVFD 266 (487)
T ss_pred ----------CeEEEEEecCCceehhhhhcccc-------------------eEEEEEeecCCceE-eecccccceEEEE
Confidence 4699999987665422211 111 12244566688766 5666666666665
Q ss_pred EECCCCcEE-EecCCCCCceeEEeeecCCEEEEEEeCCC
Q 003886 473 VNVSSGELL-RITPAESNFSWSLLTLDGDNIIAVSSSPV 510 (789)
Q Consensus 473 ~dl~tg~~~-~lt~~~~~~~~~~~s~dg~~l~~~~ss~~ 510 (789)
..+-++. .+.... .+-...+++|+..++.-.++..
T Consensus 267 --~t~~Kvv~s~~~~~-pvLsiavs~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 267 --TTNYKVVHSWKYPG-PVLSIAVSPDDQTVVIGMSNGL 302 (487)
T ss_pred --ccceEEEEeeeccc-ceeeEEecCCCceEEEecccce
Confidence 2232322 222222 2333577888887776665543
No 301
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=97.54 E-value=0.0057 Score=62.92 Aligned_cols=74 Identities=18% Similarity=0.226 Sum_probs=54.7
Q ss_pred ccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeecCCCCCcc
Q 003886 296 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSA 374 (789)
Q Consensus 296 ~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~ 374 (789)
.++.+.|.|-... +++++- .+..+.++++ .+++ ...|. +...+
T Consensus 133 rVg~V~wHPtA~N----VLlsag--------------~Dn~v~iWnv-----------------~tgeali~l~-hpd~i 176 (472)
T KOG0303|consen 133 RVGLVQWHPTAPN----VLLSAG--------------SDNTVSIWNV-----------------GTGEALITLD-HPDMV 176 (472)
T ss_pred eEEEEeecccchh----hHhhcc--------------CCceEEEEec-----------------cCCceeeecC-CCCeE
Confidence 6788999998877 666551 1236888887 5554 45565 66778
Q ss_pred CcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCC
Q 003886 375 FFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (789)
Q Consensus 375 ~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~ 416 (789)
.+..|+-||.+|+..+.+. .|.+||..+++.
T Consensus 177 ~S~sfn~dGs~l~TtckDK-----------kvRv~dpr~~~~ 207 (472)
T KOG0303|consen 177 YSMSFNRDGSLLCTTCKDK-----------KVRVIDPRRGTV 207 (472)
T ss_pred EEEEeccCCceeeeecccc-----------eeEEEcCCCCcE
Confidence 9999999999998877554 589999777554
No 302
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.50 E-value=0.0031 Score=70.90 Aligned_cols=91 Identities=18% Similarity=0.136 Sum_probs=58.0
Q ss_pred cccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEeccc
Q 003886 265 ETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSL 344 (789)
Q Consensus 265 ~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 344 (789)
-.++...+..+.+|++...+...+ ......+..++|.|-... +|.+-. -++.|.++++
T Consensus 382 fLLSSSMDKTVRLWh~~~~~CL~~--F~HndfVTcVaFnPvDDr-----yFiSGS-------------LD~KvRiWsI-- 439 (712)
T KOG0283|consen 382 FLLSSSMDKTVRLWHPGRKECLKV--FSHNDFVTCVAFNPVDDR-----YFISGS-------------LDGKVRLWSI-- 439 (712)
T ss_pred eeEeccccccEEeecCCCcceeeE--EecCCeeEEEEecccCCC-----cEeecc-------------cccceEEeec--
Confidence 344555677888899888777666 455667889999996655 344421 1234555555
Q ss_pred ccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecC
Q 003886 345 YKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (789)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~ 392 (789)
-..++.--+.-...++...|+|||+..+..+..
T Consensus 440 ---------------~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~ 472 (712)
T KOG0283|consen 440 ---------------SDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFN 472 (712)
T ss_pred ---------------CcCeeEeehhhhhhheeEEeccCCceEEEEEec
Confidence 223333333334568899999999987766544
No 303
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=97.50 E-value=0.0074 Score=67.85 Aligned_cols=131 Identities=17% Similarity=0.137 Sum_probs=79.3
Q ss_pred CceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhh
Q 003886 272 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (789)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (789)
...|..||..++....- ..-..+...+..+-.... ++... ....|.++|.
T Consensus 514 ~Gilkfw~f~~k~l~~~--l~l~~~~~~iv~hr~s~l----~a~~~---------------ddf~I~vvD~--------- 563 (910)
T KOG1539|consen 514 DGILKFWDFKKKVLKKS--LRLGSSITGIVYHRVSDL----LAIAL---------------DDFSIRVVDV--------- 563 (910)
T ss_pred cceEEEEecCCcceeee--eccCCCcceeeeeehhhh----hhhhc---------------CceeEEEEEc---------
Confidence 35677888876653211 112223334444444443 33222 2336888997
Q ss_pred hhhhcCCCCCC-CeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeee
Q 003886 352 LELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 430 (789)
Q Consensus 352 ~~~~~~~~~~~-~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~ 430 (789)
.+. -+|.+..+...+....||||||+|+..+++. .|.+||++++.... .+.+-
T Consensus 564 --------~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~-----------tIr~wDlpt~~lID-------~~~vd 617 (910)
T KOG1539|consen 564 --------VTRKVVREFWGHGNRITDMTFSPDGRWLISASMDS-----------TIRTWDLPTGTLID-------GLLVD 617 (910)
T ss_pred --------hhhhhhHHhhccccceeeeEeCCCCcEEEEeecCC-----------cEEEEeccCcceee-------eEecC
Confidence 444 3456666777789999999999999999875 49999999976531 11100
Q ss_pred eccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003886 431 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (789)
Q Consensus 431 ~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (789)
.....+.+||+|..|..+..+.....||
T Consensus 618 -------------~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 618 -------------SPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred -------------CcceeeEECCCCCEEEEEEecCceEEEE
Confidence 1124678999999776554433334444
No 304
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=97.49 E-value=0.00049 Score=72.31 Aligned_cols=211 Identities=16% Similarity=0.145 Sum_probs=105.1
Q ss_pred eeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCC--CCCC---CCchhhccCCCCCC
Q 003886 574 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYR--GSLG---FGEEALQSLPGKVG 648 (789)
Q Consensus 574 ~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~r--Gs~G---~G~~~~~~~~~~~~ 648 (789)
..+.+.++.|......+++|.+++.||........ ......++..++.++..+.. |..+ +|............
T Consensus 31 ~~~~~~l~~p~~~~~~~~~p~v~~~h~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 108 (299)
T COG1073 31 IALAAVLHLPPSGNEEKKLPAVVFLHGFGSSKEQS--LGYAVLLAEKGYRVLAGDASLFGESGGDPRGLADSEGYAEDFS 108 (299)
T ss_pred ceeeeEEEecCCCCccccCceEEeccCccccccCc--chHHHHhhhceeEEeeeccccccccccccccccCccccccccc
Confidence 56788898887544447899999999966543222 22566788899998888751 1110 01100000000000
Q ss_pred -cccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCC---CceeEEEEeCCccchhhhhcCCC----CC--
Q 003886 649 -SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLCNLALMVGTTD----IP-- 718 (789)
Q Consensus 649 -~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p---~~~~a~v~~~pv~~~~~~~~~~~----~~-- 718 (789)
.....+....+..-........++....|.+.|+..+...+...+ +..+.++...+.-.......... ..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~g~~~~~~~~~~~~~~~~~~ 188 (299)
T COG1073 109 AAVLLLLSEGVLDKDYRLLGASLGPRILAGLSLGGPSAGALLAWGPTRLDASRIVVWGESLGGALALLLLGANPELAREL 188 (299)
T ss_pred hhheeeeccccccHHHHHHhhhcCcceEEEEEeeccchHHHhhcchhHHHhhcccceeeccCceeeccccccchHHHHhh
Confidence 000000011111100111123367888888888888887776654 22222222222111111100000 00
Q ss_pred -cchhhhh-ccCc-cccccCCCCChhhHHHHHhcCccccCCCCC-CCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 719 -DWCYVES-YGSK-GKDSFTESPSVEDLTRFHSKSPISHISKVK-TPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 719 -~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.+..... +... ............ ...+...++...+.++. +|+|++||.+|..||..++..++++.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~i~~~P~l~~~G~~D~~vp~~~~~~~~~~~~~ 260 (299)
T COG1073 189 IDYLITPGGFAPLPAPEAPLDTLPLR-AVLLLLLDPFDDAEKISPRPVLLVHGERDEVVPLRDAEDLYEAARE 260 (299)
T ss_pred hhhhccCCCCCCCCcccccccccccc-hhhhccCcchhhHhhcCCcceEEEecCCCcccchhhhHHHHhhhcc
Confidence 0000000 0000 000011111112 33455666667777777 7999999999999999999999998765
No 305
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.48 E-value=0.005 Score=62.71 Aligned_cols=251 Identities=16% Similarity=0.183 Sum_probs=142.4
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
.+...-+.|+--.++..++.. -+.+| ..|+.++-+. +...++ ..++++.-|+.||-.+.+
T Consensus 110 ~vt~v~~hp~~~~v~~as~d~-----tikv~D~~tg~~e~~Lr---GHt~sv------~di~~~a~Gk~l~tcSsD---- 171 (406)
T KOG0295|consen 110 SVTRVIFHPSEALVVSASEDA-----TIKVFDTETGELERSLR---GHTDSV------FDISFDASGKYLATCSSD---- 171 (406)
T ss_pred ceeeeeeccCceEEEEecCCc-----eEEEEEccchhhhhhhh---ccccce------eEEEEecCccEEEecCCc----
Confidence 355566788754444433332 34445 3455432222 222223 689999999888876443
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCC--ceEeccCCCCCCccceEEEeeCCCCCc
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG--EVQAVKGIPKSLSVGQVVWAPLNEGLH 310 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g--~~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (789)
-.+.+||.++- ..+.+ ...+..+..+.|-|-|..
T Consensus 172 ----------------------------------------l~~~LWd~~~~~~c~ks~--~gh~h~vS~V~f~P~gd~-- 207 (406)
T KOG0295|consen 172 ----------------------------------------LSAKLWDFDTFFRCIKSL--IGHEHGVSSVFFLPLGDH-- 207 (406)
T ss_pred ----------------------------------------cchhheeHHHHHHHHHHh--cCcccceeeEEEEecCCe--
Confidence 22667777652 22333 344557789999999988
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeecCCCCCccCcceecCCCCEEEEE
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFL 389 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~la~~ 389 (789)
|+..+ ++..|..+++ +++. ..+++.+...+...+.+-||..+|-.
T Consensus 208 --ilS~s---------------rD~tik~We~-----------------~tg~cv~t~~~h~ewvr~v~v~~DGti~As~ 253 (406)
T KOG0295|consen 208 --ILSCS---------------RDNTIKAWEC-----------------DTGYCVKTFPGHSEWVRMVRVNQDGTIIASC 253 (406)
T ss_pred --eeecc---------------cccceeEEec-----------------ccceeEEeccCchHhEEEEEecCCeeEEEec
Confidence 87766 3446778887 4554 56777777788889999999988776
Q ss_pred ecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEE
Q 003886 390 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 469 (789)
Q Consensus 390 s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~ 469 (789)
+++. +|.+|-+.+++-+.+.....-++..+.-..+...| ++....=+.||..+.++.+++....
T Consensus 254 s~dq-----------tl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~-----~i~~at~~~~~~~~l~s~SrDktIk 317 (406)
T KOG0295|consen 254 SNDQ-----------TLRVWVVATKQCKAELREHEHPVECIAWAPESSYP-----SISEATGSTNGGQVLGSGSRDKTIK 317 (406)
T ss_pred CCCc-----------eEEEEEeccchhhhhhhccccceEEEEecccccCc-----chhhccCCCCCccEEEeecccceEE
Confidence 6543 57777766653332222222122211111111122 1111112234556777777777777
Q ss_pred EEEEECCCCcEEE-ecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 470 IISVNVSSGELLR-ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 470 l~~~dl~tg~~~~-lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
+| |+.+|...- |...+..+...+|+|.|++|+ ++.+..+ +-+.|+...
T Consensus 318 ~w--dv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~-ScaDDkt---lrvwdl~~~ 366 (406)
T KOG0295|consen 318 IW--DVSTGMCLFTLVGHDNWVRGVAFSPGGKYIL-SCADDKT---LRVWDLKNL 366 (406)
T ss_pred EE--eccCCeEEEEEecccceeeeeEEcCCCeEEE-EEecCCc---EEEEEeccc
Confidence 66 555776433 223333455568888888765 4444444 556666544
No 306
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.048 Score=59.55 Aligned_cols=187 Identities=13% Similarity=0.073 Sum_probs=111.6
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhh
Q 003886 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (789)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (789)
..+.++|..+.+...- .........++++||++. +|+++... +...++.+|.
T Consensus 96 ~~v~vid~~~~~~~~~--~~vG~~P~~~~~~~~~~~-----vYV~n~~~-----------~~~~vsvid~---------- 147 (381)
T COG3391 96 NTVSVIDTATNTVLGS--IPVGLGPVGLAVDPDGKY-----VYVANAGN-----------GNNTVSVIDA---------- 147 (381)
T ss_pred CeEEEEcCcccceeeE--eeeccCCceEEECCCCCE-----EEEEeccc-----------CCceEEEEeC----------
Confidence 6788888666554433 222336678999999997 44553211 2346888886
Q ss_pred hhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeec
Q 003886 353 ELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQC 432 (789)
Q Consensus 353 ~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~ 432 (789)
.+................+++|||++++..... .+.|.++|..+..... . .....+.+
T Consensus 148 -------~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~----------~~~v~vi~~~~~~v~~-~-~~~~~~~~--- 205 (381)
T COG3391 148 -------ATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSD----------DNTVSVIDTSGNSVVR-G-SVGSLVGV--- 205 (381)
T ss_pred -------CCCeEEEEEecCCCcceEEECCCCCeEEEEecC----------CCeEEEEeCCCcceec-c-cccccccc---
Confidence 444433222211123788999999987655522 3568999965543321 1 00001111
Q ss_pred cCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC--CceeEEeeecCCEEEEEEeCCC
Q 003886 433 AEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--NFSWSLLTLDGDNIIAVSSSPV 510 (789)
Q Consensus 433 ~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~--~~~~~~~s~dg~~l~~~~ss~~ 510 (789)
+ .......+++||.++|+.-.......+..+|..++.+........ .......+|+|+.++.....
T Consensus 206 -----~-----~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~-- 273 (381)
T COG3391 206 -----G-----TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ-- 273 (381)
T ss_pred -----C-----CCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC--
Confidence 1 123466789999988877655545688999999988877522211 12335788899887766555
Q ss_pred CCCeEEEEeecc
Q 003886 511 DVPQVKYGYFVD 522 (789)
Q Consensus 511 ~p~~i~~~~~~~ 522 (789)
...++.++...
T Consensus 274 -~~~V~vid~~~ 284 (381)
T COG3391 274 -GGTVSVIDGAT 284 (381)
T ss_pred -CCeEEEEeCCC
Confidence 44567776543
No 307
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.47 E-value=0.035 Score=57.68 Aligned_cols=134 Identities=15% Similarity=0.141 Sum_probs=70.8
Q ss_pred ccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCee-----e-cCC
Q 003886 296 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-----N-LTE 369 (789)
Q Consensus 296 ~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~-Lt~ 369 (789)
-+..+.++.++.+ ++|++. ...||.+|+. +..++ . ++.
T Consensus 185 ~f~~~~~~~~~~~----~~F~Sy---------------~G~v~~~dls-----------------g~~~~~~~~~~~~t~ 228 (342)
T PF06433_consen 185 LFEHPAYSRDGGR----LYFVSY---------------EGNVYSADLS-----------------GDSAKFGKPWSLLTD 228 (342)
T ss_dssp B-S--EEETTTTE----EEEEBT---------------TSEEEEEEET-----------------TSSEEEEEEEESS-H
T ss_pred cccccceECCCCe----EEEEec---------------CCEEEEEecc-----------------CCcccccCcccccCc
Confidence 4557788888877 899883 3478999883 22221 1 111
Q ss_pred -----C--CCccCcceecCCCCEEEEEecCCCCCCCCccc-cceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccc
Q 003886 370 -----S--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA-TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGL 441 (789)
Q Consensus 370 -----~--~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~-~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~ 441 (789)
+ .+.....++.+..+.|+.+-.+.. .|.|.. ...||++|+.+++......-..
T Consensus 229 ~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~--~gsHKdpgteVWv~D~~t~krv~Ri~l~~----------------- 289 (342)
T PF06433_consen 229 AEKADGWRPGGWQLIAYHAASGRLYVLMHQGG--EGSHKDPGTEVWVYDLKTHKRVARIPLEH----------------- 289 (342)
T ss_dssp HHHHTTEEE-SSS-EEEETTTTEEEEEEEE----TT-TTS-EEEEEEEETTTTEEEEEEEEEE-----------------
T ss_pred cccccCcCCcceeeeeeccccCeEEEEecCCC--CCCccCCceEEEEEECCCCeEEEEEeCCC-----------------
Confidence 1 123445677777777766544321 244533 3579999998866531111000
Q ss_pred cccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC
Q 003886 442 YSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 488 (789)
Q Consensus 442 ~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~ 488 (789)
.+.++..+.|.+-++|..+. +...|+.+|..+|+..+-...-+
T Consensus 290 ---~~~Si~Vsqd~~P~L~~~~~-~~~~l~v~D~~tGk~~~~~~~lG 332 (342)
T PF06433_consen 290 ---PIDSIAVSQDDKPLLYALSA-GDGTLDVYDAATGKLVRSIEQLG 332 (342)
T ss_dssp ---EESEEEEESSSS-EEEEEET-TTTEEEEEETTT--EEEEE---S
T ss_pred ---ccceEEEccCCCcEEEEEcC-CCCeEEEEeCcCCcEEeehhccC
Confidence 01244567777766665433 44578899999998877665544
No 308
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=97.47 E-value=0.00095 Score=63.14 Aligned_cols=100 Identities=16% Similarity=0.176 Sum_probs=69.4
Q ss_pred EEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccE
Q 003886 594 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKV 673 (789)
Q Consensus 594 ~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv 673 (789)
++|++-|-++ +...=......|+++|+.|+.+|-.- | |. ..+...+...|+.+.+++..++ ...+++
T Consensus 4 ~~v~~SGDgG--w~~~d~~~a~~l~~~G~~VvGvdsl~---Y---fw---~~rtP~~~a~Dl~~~i~~y~~~--w~~~~v 70 (192)
T PF06057_consen 4 LAVFFSGDGG--WRDLDKQIAEALAKQGVPVVGVDSLR---Y---FW---SERTPEQTAADLARIIRHYRAR--WGRKRV 70 (192)
T ss_pred EEEEEeCCCC--chhhhHHHHHHHHHCCCeEEEechHH---H---Hh---hhCCHHHHHHHHHHHHHHHHHH--hCCceE
Confidence 5677777333 22222235679999999999999431 1 21 1122233467888888888877 457899
Q ss_pred EEEEcCccHHHHHHHHHhCCC----ceeEEEEeCCcc
Q 003886 674 TVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLC 706 (789)
Q Consensus 674 ~l~G~S~GG~~a~~~~~~~p~----~~~a~v~~~pv~ 706 (789)
.|+|+|+|+-+...+..+-|. +++.+++.+|-.
T Consensus 71 vLiGYSFGADvlP~~~nrLp~~~r~~v~~v~Ll~p~~ 107 (192)
T PF06057_consen 71 VLIGYSFGADVLPFIYNRLPAALRARVAQVVLLSPST 107 (192)
T ss_pred EEEeecCCchhHHHHHhhCCHHHHhheeEEEEeccCC
Confidence 999999999988888887764 677787777643
No 309
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=97.44 E-value=0.00017 Score=49.93 Aligned_cols=29 Identities=38% Similarity=0.592 Sum_probs=24.0
Q ss_pred eecCCCCCccCcceecCCCCEEEEEecCC
Q 003886 365 VNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (789)
Q Consensus 365 ~~Lt~~~~~~~~p~~SpDG~~la~~s~~~ 393 (789)
++++...+....|.|||||++|+|++.+.
T Consensus 2 ~~~t~~~~~~~~p~~SpDGk~i~f~s~~~ 30 (39)
T PF07676_consen 2 KQLTNSPGDDGSPAWSPDGKYIYFTSNRN 30 (39)
T ss_dssp EEES-SSSSEEEEEE-TTSSEEEEEEECT
T ss_pred cCcccCCccccCEEEecCCCEEEEEecCC
Confidence 56777778889999999999999999886
No 310
>PRK04940 hypothetical protein; Provisional
Probab=97.44 E-value=0.0021 Score=60.74 Aligned_cols=91 Identities=11% Similarity=0.122 Sum_probs=54.4
Q ss_pred ccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcC
Q 003886 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKS 750 (789)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 750 (789)
++++|+|.|+|||.|.+++.++. . .+|++||...+...+. ...+. ..+ +. .-..+..+.++
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g--~-~aVLiNPAv~P~~~L~----------~~ig~-~~~-y~-~~~~~h~~eL~--- 120 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCG--I-RQVIFNPNLFPEENME----------GKIDR-PEE-YA-DIATKCVTNFR--- 120 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHC--C-CEEEECCCCChHHHHH----------HHhCC-Ccc-hh-hhhHHHHHHhh---
Confidence 46999999999999999999864 4 4566788765422110 00010 000 11 00111112221
Q ss_pred ccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHC
Q 003886 751 PISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHI 785 (789)
Q Consensus 751 p~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l 785 (789)
.+-.-..+++..+.|++.++.++.+.|...
T Consensus 121 -----~~~p~r~~vllq~gDEvLDyr~a~~~y~~~ 150 (180)
T PRK04940 121 -----EKNRDRCLVILSRNDEVLDSQRTAEELHPY 150 (180)
T ss_pred -----hcCcccEEEEEeCCCcccCHHHHHHHhccC
Confidence 112223699999999999999999877654
No 311
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.44 E-value=0.065 Score=57.16 Aligned_cols=261 Identities=13% Similarity=0.095 Sum_probs=137.9
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~ 234 (789)
-+....|.++|+.|-= ++...+.||..+.. +++.......|.| .++.---||+.|- .. +.....
T Consensus 248 ~Vl~v~F~engdviTg------DS~G~i~Iw~~~~~-~~~k~~~aH~ggv------~~L~~lr~GtllS-Gg--KDRki~ 311 (626)
T KOG2106|consen 248 FVLCVTFLENGDVITG------DSGGNILIWSKGTN-RISKQVHAHDGGV------FSLCMLRDGTLLS-GG--KDRKII 311 (626)
T ss_pred EEEEEEEcCCCCEEee------cCCceEEEEeCCCc-eEEeEeeecCCce------EEEEEecCccEee-cC--ccceEE
Confidence 3778889999987641 23346788843221 1111111222333 5677778887543 22 222234
Q ss_pred CccCCCCCCCCCC-cCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEE
Q 003886 235 TFSLGSTKGGSSD-KDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (789)
Q Consensus 235 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (789)
.|+..+++....+ ++.... .....+..++.+.+..++.|..=.++++-...+. ...+ ....++-.|+... +
T Consensus 312 ~Wd~~y~k~r~~elPe~~G~--iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~-gh~d-elwgla~hps~~q----~ 383 (626)
T KOG2106|consen 312 LWDDNYRKLRETELPEQFGP--IRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQ-GHGD-ELWGLATHPSKNQ----L 383 (626)
T ss_pred eccccccccccccCchhcCC--eeEEecCCCcEEEeeccceEEEeeecCCceEEEE-eccc-ceeeEEcCCChhh----e
Confidence 5554444433221 111111 1112223344566666666666666665433331 1112 4456777888776 5
Q ss_pred EEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCC
Q 003886 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (789)
Q Consensus 314 ~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~ 393 (789)
+-.+. ..++.+++- ..-+..+++.. .+....|.|-| .||.-+..
T Consensus 384 ~T~gq---------------dk~v~lW~~-----------------~k~~wt~~~~d--~~~~~~fhpsg-~va~Gt~~- 427 (626)
T KOG2106|consen 384 LTCGQ---------------DKHVRLWND-----------------HKLEWTKIIED--PAECADFHPSG-VVAVGTAT- 427 (626)
T ss_pred eeccC---------------cceEEEccC-----------------CceeEEEEecC--ceeEeeccCcc-eEEEeecc-
Confidence 55542 113334431 22233334333 35667889999 66655433
Q ss_pred CCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003886 394 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (789)
Q Consensus 394 ~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~ 473 (789)
.+.+++|.++... +.+-.+. ..+..+.++|||..|. .++.++...||++
T Consensus 428 ----------G~w~V~d~e~~~l----------v~~~~d~----------~~ls~v~ysp~G~~lA-vgs~d~~iyiy~V 476 (626)
T KOG2106|consen 428 ----------GRWFVLDTETQDL----------VTIHTDN----------EQLSVVRYSPDGAFLA-VGSHDNHIYIYRV 476 (626)
T ss_pred ----------ceEEEEeccccee----------EEEEecC----------CceEEEEEcCCCCEEE-EecCCCeEEEEEE
Confidence 3688899776322 1111110 1245678999998664 4566777889999
Q ss_pred ECCCCcEEEecCCCC-CceeEEeeecCCEEEEEE
Q 003886 474 NVSSGELLRITPAES-NFSWSLLTLDGDNIIAVS 506 (789)
Q Consensus 474 dl~tg~~~~lt~~~~-~~~~~~~s~dg~~l~~~~ 506 (789)
+.++.+..++-.-.+ .+....||+|++++....
T Consensus 477 s~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S 510 (626)
T KOG2106|consen 477 SANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNS 510 (626)
T ss_pred CCCCcEEEEeeeecCceeEEeeecCCCceEEecc
Confidence 987766666543333 344557888888765443
No 312
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=97.42 E-value=0.0052 Score=61.61 Aligned_cols=113 Identities=15% Similarity=0.169 Sum_probs=69.9
Q ss_pred cceeeCCcccccCCccCceEEEEEc-cCCce-EeccC-CCC----CCccceEEEeeCCCCCccEEEEEeecCCceeeeee
Q 003886 256 QGDWEEDWGETYAGKRQPSLFVINI-NSGEV-QAVKG-IPK----SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIK 328 (789)
Q Consensus 256 ~~~~~~d~g~~~~~~~~~~l~v~d~-~~g~~-~~l~~-~~~----~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~ 328 (789)
...|++| |+++...-+..|.++|+ ..|.- ...+. +.+ ...+..+++||-.... ++..+
T Consensus 163 sL~Fs~D-GeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~---~a~gs----------- 227 (406)
T KOG2919|consen 163 SLQFSPD-GEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKT---LAVGS----------- 227 (406)
T ss_pred eEEecCC-CCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcc---eeeec-----------
Confidence 3458999 45554445677888887 33431 11110 111 2245678999965541 55444
Q ss_pred eeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEE
Q 003886 329 YCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHR 408 (789)
Q Consensus 329 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~ 408 (789)
|.+...||.-+ ....+..|-.+.+.++...|-+||++|+.-+.+. ..|..
T Consensus 228 --Y~q~~giy~~~------------------~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~----------dkIl~ 277 (406)
T KOG2919|consen 228 --YGQRVGIYNDD------------------GRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKD----------DKILC 277 (406)
T ss_pred --ccceeeeEecC------------------CCCceeeecccCCCeeeEEeccCcCeecccccCC----------CeEEE
Confidence 23444677666 4556667777788899999999999875444332 46999
Q ss_pred eecCC
Q 003886 409 IDWPT 413 (789)
Q Consensus 409 ~d~~~ 413 (789)
||+..
T Consensus 278 WDiR~ 282 (406)
T KOG2919|consen 278 WDIRY 282 (406)
T ss_pred Eeehh
Confidence 99864
No 313
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=97.40 E-value=0.0054 Score=62.18 Aligned_cols=123 Identities=14% Similarity=0.207 Sum_probs=71.3
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHH----HHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcc
Q 003886 575 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSL----AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (789)
Q Consensus 575 ~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~----~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~ 650 (789)
.++..+.-. ..+++|+||-.|.-+.. ....|..++ .......+.++-+|.+|... |. ..++..+-..
T Consensus 10 ~v~V~v~G~----~~~~kp~ilT~HDvGlN-h~scF~~ff~~~~m~~i~~~f~i~Hi~aPGqe~-ga---~~~p~~y~yP 80 (283)
T PF03096_consen 10 SVHVTVQGD----PKGNKPAILTYHDVGLN-HKSCFQGFFNFEDMQEILQNFCIYHIDAPGQEE-GA---ATLPEGYQYP 80 (283)
T ss_dssp EEEEEEESS------TTS-EEEEE--TT---HHHHCHHHHCSHHHHHHHTTSEEEEEE-TTTST-T--------TT----
T ss_pred EEEEEEEec----CCCCCceEEEecccccc-chHHHHHHhcchhHHHHhhceEEEEEeCCCCCC-Cc---cccccccccc
Confidence 456555532 23479999999985442 122243322 22334569999999987432 22 2334555556
Q ss_pred cHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccch
Q 003886 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 708 (789)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~ 708 (789)
.++++.+.+..+++. ..-+.+.-+|--.|+++-+++|..+|+++.++|+++|...-
T Consensus 81 smd~LAe~l~~Vl~~--f~lk~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~~ 136 (283)
T PF03096_consen 81 SMDQLAEMLPEVLDH--FGLKSVIGFGVGAGANILARFALKHPERVLGLILVNPTCTA 136 (283)
T ss_dssp -HHHHHCTHHHHHHH--HT---EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S-
T ss_pred CHHHHHHHHHHHHHh--CCccEEEEEeeccchhhhhhccccCccceeEEEEEecCCCC
Confidence 678888777777776 34467999999999999999999999999999999987643
No 314
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=97.40 E-value=0.00036 Score=68.79 Aligned_cols=89 Identities=25% Similarity=0.459 Sum_probs=53.1
Q ss_pred EEEEcCCCCCCCchhhHHHHHHHHHCCcE---EEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCc
Q 003886 595 IVVLHGGPHSVSLSSYSKSLAFLSSVGYS---LLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (789)
Q Consensus 595 vv~~HGg~~~~~~~~~~~~~~~la~~Gy~---V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (789)
||++||-... ....|......|.++||. |++++|-...+ ........ .....+.++.+.|+.+++. ...
T Consensus 4 VVlVHG~~~~-~~~~w~~~~~~l~~~GY~~~~vya~tyg~~~~--~~~~~~~~--~~~~~~~~l~~fI~~Vl~~--TGa- 75 (219)
T PF01674_consen 4 VVLVHGTGGN-AYSNWSTLAPYLKAAGYCDSEVYALTYGSGNG--SPSVQNAH--MSCESAKQLRAFIDAVLAY--TGA- 75 (219)
T ss_dssp EEEE--TTTT-TCGGCCHHHHHHHHTT--CCCEEEE--S-CCH--HTHHHHHH--B-HHHHHHHHHHHHHHHHH--HT--
T ss_pred EEEECCCCcc-hhhCHHHHHHHHHHcCCCcceeEeccCCCCCC--CCcccccc--cchhhHHHHHHHHHHHHHh--hCC-
Confidence 6789995542 356788888999999999 89999843211 11111100 1122346777888888765 346
Q ss_pred cEEEEEcCccHHHHHHHHHh
Q 003886 672 KVTVVGGSHGGFLTTHLIGQ 691 (789)
Q Consensus 672 rv~l~G~S~GG~~a~~~~~~ 691 (789)
+|-|+|||+||.++-+++..
T Consensus 76 kVDIVgHS~G~~iaR~yi~~ 95 (219)
T PF01674_consen 76 KVDIVGHSMGGTIARYYIKG 95 (219)
T ss_dssp -EEEEEETCHHHHHHHHHHH
T ss_pred EEEEEEcCCcCHHHHHHHHH
Confidence 99999999999999988753
No 315
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=97.39 E-value=0.018 Score=59.08 Aligned_cols=128 Identities=19% Similarity=0.193 Sum_probs=81.5
Q ss_pred CccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCcc
Q 003886 295 LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSA 374 (789)
Q Consensus 295 ~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~ 374 (789)
..+.++.|++ ... ++-++|++ .|..+|+. .++...+++.. ...
T Consensus 261 ~~Vs~V~w~d-~~v----~yS~SwDH---------------TIk~WDle----------------tg~~~~~~~~~-ksl 303 (423)
T KOG0313|consen 261 EPVSSVVWSD-ATV----IYSVSWDH---------------TIKVWDLE----------------TGGLKSTLTTN-KSL 303 (423)
T ss_pred cceeeEEEcC-CCc----eEeecccc---------------eEEEEEee----------------cccceeeeecC-cce
Confidence 3678999998 333 55566544 47788882 33344455543 346
Q ss_pred CcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccC
Q 003886 375 FFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSD 454 (789)
Q Consensus 375 ~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~D 454 (789)
.....+|.-+.|+..+.+ .+|.+||..++....... .|-| +..-+..+.|+|-
T Consensus 304 ~~i~~~~~~~Ll~~gssd-----------r~irl~DPR~~~gs~v~~---------------s~~g-H~nwVssvkwsp~ 356 (423)
T KOG0313|consen 304 NCISYSPLSKLLASGSSD-----------RHIRLWDPRTGDGSVVSQ---------------SLIG-HKNWVSSVKWSPT 356 (423)
T ss_pred eEeecccccceeeecCCC-----------CceeecCCCCCCCceeEE---------------eeec-chhhhhheecCCC
Confidence 678889988877765543 368999987654321110 1111 1113457789999
Q ss_pred CCEEEEEEEeCCeEEEEEEECCCCcEEEecCC
Q 003886 455 GCTMLLSSIWGSSQVIISVNVSSGELLRITPA 486 (789)
Q Consensus 455 g~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~ 486 (789)
..+++++++.++...||-+.-..+.+..|...
T Consensus 357 ~~~~~~S~S~D~t~klWDvRS~k~plydI~~h 388 (423)
T KOG0313|consen 357 NEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH 388 (423)
T ss_pred CceEEEEEecCCeEEEEEeccCCCcceeeccC
Confidence 99999999999999999776544455555544
No 316
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=97.39 E-value=0.0046 Score=61.81 Aligned_cols=120 Identities=15% Similarity=0.178 Sum_probs=85.0
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHH-----HHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcc
Q 003886 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-----SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (789)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~-----~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~ 650 (789)
++..++-- ++.++|+||-.|.-+... ...|.. .++-+.++ |.|+-+|.+|.- .| ...++..+-..
T Consensus 34 v~V~V~Gd----~~~~kpaiiTyhDlglN~-~scFq~ff~~p~m~ei~~~-fcv~HV~~PGqe-~g---Ap~~p~~y~yP 103 (326)
T KOG2931|consen 34 VHVTVYGD----PKGNKPAIITYHDLGLNH-KSCFQGFFNFPDMAEILEH-FCVYHVDAPGQE-DG---APSFPEGYPYP 103 (326)
T ss_pred EEEEEecC----CCCCCceEEEecccccch-HhHhHHhhcCHhHHHHHhh-eEEEecCCCccc-cC---CccCCCCCCCC
Confidence 55555532 233688899999854431 222332 34455566 999999987731 12 33445665566
Q ss_pred cHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccc
Q 003886 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 707 (789)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~ 707 (789)
..+++.+.+-.+++. ..-+-|.-+|--.|+++.++.|..||+|+-++|++++...
T Consensus 104 smd~LAd~l~~VL~~--f~lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~~~ 158 (326)
T KOG2931|consen 104 SMDDLADMLPEVLDH--FGLKSVIGMGVGAGAYILARFALNHPERVLGLVLINCDPC 158 (326)
T ss_pred CHHHHHHHHHHHHHh--cCcceEEEecccccHHHHHHHHhcChhheeEEEEEecCCC
Confidence 788888888877776 4556789999999999999999999999999999998654
No 317
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.39 E-value=0.033 Score=58.26 Aligned_cols=206 Identities=15% Similarity=0.163 Sum_probs=122.0
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCC-cee-EEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQS-QLE-KEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~-~~~-~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
-+....++|+-..++..+... .+.+|..+ ... ..... +.++| ..++-.|.|++|+.++.+..
T Consensus 263 ki~~v~~~~~~~~v~~aSad~-----~i~vws~~~~s~~~~~~~---h~~~V------~~ls~h~tgeYllsAs~d~~-- 326 (506)
T KOG0289|consen 263 KITSVKFHKDLDTVITASADE-----IIRVWSVPLSSEPTSSRP---HEEPV------TGLSLHPTGEYLLSASNDGT-- 326 (506)
T ss_pred EEEEEEeccchhheeecCCcc-----eEEeeccccccCcccccc---ccccc------eeeeeccCCcEEEEecCCce--
Confidence 367788999988877655443 67788322 111 11111 11222 78888999998887766531
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCce-EeccCCCCCCccceEEEeeCCCCCcc
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-QAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~-~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (789)
....|+.+|.. ..+..-..+......+|.|||
T Consensus 327 ------------------------------------------w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg----- 359 (506)
T KOG0289|consen 327 ------------------------------------------WAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG----- 359 (506)
T ss_pred ------------------------------------------EEEEEccCCcEEEEEeeccccceeEEeeEcCCc-----
Confidence 11123333322 111000123456788999998
Q ss_pred EEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEec
Q 003886 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 391 (789)
Q Consensus 312 ~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~ 391 (789)
++|.... .+..|-++|+. ......+...+.+.+...+||-+|=+||...+
T Consensus 360 -Lifgtgt-------------~d~~vkiwdlk----------------s~~~~a~Fpght~~vk~i~FsENGY~Lat~ad 409 (506)
T KOG0289|consen 360 -LIFGTGT-------------PDGVVKIWDLK----------------SQTNVAKFPGHTGPVKAISFSENGYWLATAAD 409 (506)
T ss_pred -eEEeccC-------------CCceEEEEEcC----------------CccccccCCCCCCceeEEEeccCceEEEEEec
Confidence 4555422 22367778872 22345566667788999999999999998886
Q ss_pred CCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003886 392 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (789)
Q Consensus 392 ~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (789)
+. .+.+||+......+. ...+ +.+ .+..+.|...|++|... +....+|
T Consensus 410 d~-----------~V~lwDLRKl~n~kt----------~~l~--~~~------~v~s~~fD~SGt~L~~~---g~~l~Vy 457 (506)
T KOG0289|consen 410 DG-----------SVKLWDLRKLKNFKT----------IQLD--EKK------EVNSLSFDQSGTYLGIA---GSDLQVY 457 (506)
T ss_pred CC-----------eEEEEEehhhcccce----------eecc--ccc------cceeEEEcCCCCeEEee---cceeEEE
Confidence 64 389999865332110 0000 000 23466788888877654 5567888
Q ss_pred EEECCCCcEEEecC
Q 003886 472 SVNVSSGELLRITP 485 (789)
Q Consensus 472 ~~dl~tg~~~~lt~ 485 (789)
.++-.+.+.+.+..
T Consensus 458 ~~~k~~k~W~~~~~ 471 (506)
T KOG0289|consen 458 ICKKKTKSWTEIKE 471 (506)
T ss_pred EEecccccceeeeh
Confidence 88877777666543
No 318
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=97.38 E-value=0.0029 Score=60.23 Aligned_cols=108 Identities=22% Similarity=0.308 Sum_probs=77.8
Q ss_pred CcEEEEEcCCCCCCCc-hhhHHHHHHHHHCCcEEEEEcCCCCC-CCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCC
Q 003886 592 DPLIVVLHGGPHSVSL-SSYSKSLAFLSSVGYSLLIVNYRGSL-GFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~-~~~~~~~~~la~~Gy~V~~~d~rGs~-G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (789)
.-.|||+-|-+.+.-. ..-.....+|.+.+|..+.+..|.+. |||.... ..+.+|+..+++++...+.
T Consensus 36 ~~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~sl--------k~D~edl~~l~~Hi~~~~f-- 105 (299)
T KOG4840|consen 36 SVKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNGYGTFSL--------KDDVEDLKCLLEHIQLCGF-- 105 (299)
T ss_pred EEEEEEEcccCCCccccccHHHHHHHHhhccceeeeeeccccccccccccc--------cccHHHHHHHHHHhhccCc--
Confidence 3567777553322211 22334567889999999999998653 5665432 4568899999998766542
Q ss_pred CccEEEEEcCccHHHHHHHHHh--CCCceeEEEEeCCccchh
Q 003886 670 PSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLCNLA 709 (789)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~~~~--~p~~~~a~v~~~pv~~~~ 709 (789)
.+.|.++|||-|..-.++++++ .+..++++|+.+||.|-.
T Consensus 106 St~vVL~GhSTGcQdi~yYlTnt~~~r~iraaIlqApVSDrE 147 (299)
T KOG4840|consen 106 STDVVLVGHSTGCQDIMYYLTNTTKDRKIRAAILQAPVSDRE 147 (299)
T ss_pred ccceEEEecCccchHHHHHHHhccchHHHHHHHHhCccchhh
Confidence 3489999999999999888854 245788999999999976
No 319
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.37 E-value=0.00057 Score=69.27 Aligned_cols=138 Identities=14% Similarity=0.196 Sum_probs=87.5
Q ss_pred cCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhh
Q 003886 271 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (789)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (789)
.+..|+++|.-.+.+..- .--.......+|+| +. ..|++- +.+..||.+|..
T Consensus 208 sDrsIvLyD~R~~~Pl~K--Vi~~mRTN~IswnP--ea----fnF~~a-------------~ED~nlY~~DmR------- 259 (433)
T KOG0268|consen 208 SDRSIVLYDLRQASPLKK--VILTMRTNTICWNP--EA----FNFVAA-------------NEDHNLYTYDMR------- 259 (433)
T ss_pred cCCceEEEecccCCccce--eeeeccccceecCc--cc----cceeec-------------cccccceehhhh-------
Confidence 357799999877654321 12233456889999 44 667662 234579999973
Q ss_pred hhhhhcCCCCCCCeeec-CCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEee
Q 003886 351 ELELKESSSEDLPVVNL-TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 429 (789)
Q Consensus 351 ~~~~~~~~~~~~~~~~L-t~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~ 429 (789)
.-..+..+ ..+...+....|||-|+-++..+-+. .|.++....+..+.+-.... .
T Consensus 260 ---------~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk-----------sIRIf~~~~~~SRdiYhtkR-M--- 315 (433)
T KOG0268|consen 260 ---------NLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK-----------SIRIFPVNHGHSRDIYHTKR-M--- 315 (433)
T ss_pred ---------hhcccchhhcccceeEEEeccCCCcchhccccccc-----------eEEEeecCCCcchhhhhHhh-h---
Confidence 11222222 23344578899999999988766554 47777766655543321110 0
Q ss_pred eeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEEC
Q 003886 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 475 (789)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl 475 (789)
..+..+.||.|+++| +++++++...||.-+.
T Consensus 316 --------------q~V~~Vk~S~Dskyi-~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 316 --------------QHVFCVKYSMDSKYI-ISGSDDGNVRLWKAKA 346 (433)
T ss_pred --------------heeeEEEEeccccEE-EecCCCcceeeeecch
Confidence 124466899999855 7888899999998764
No 320
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=97.37 E-value=0.01 Score=68.59 Aligned_cols=97 Identities=13% Similarity=0.103 Sum_probs=59.7
Q ss_pred CeEEEEecCCCCCCeEEEEecCC-ceeEE-EecCCCccccccCCCcccceeecCCCCEEEE-EeecCCCCCCCccCCCCC
Q 003886 166 SKLLVVRNPENESPIQFELWSQS-QLEKE-FHVPQTVHGSVYADGWFEGISWNSDETLIAY-VAEEPSPSKPTFSLGSTK 242 (789)
Q Consensus 166 ~~la~~~~~~~~~~~~~~i~~~~-~~~~~-~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~-~~~~~~~~~~~~~~~~~~ 242 (789)
.+|||+.+.. + .|..++.+| ..+.+ ++....+ ..+.|||||++||| ++.+...
T Consensus 319 tkiAfv~~~~-~--~L~~~D~dG~n~~~ve~~~~~~i----------~sP~~SPDG~~vAY~ts~e~~~----------- 374 (912)
T TIGR02171 319 AKLAFRNDVT-G--NLAYIDYTKGASRAVEIEDTISV----------YHPDISPDGKKVAFCTGIEGLP----------- 374 (912)
T ss_pred eeEEEEEcCC-C--eEEEEecCCCCceEEEecCCCce----------ecCcCCCCCCEEEEEEeecCCC-----------
Confidence 4788987632 1 577788444 44444 4433333 68999999999999 5443211
Q ss_pred CCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCc--eEeccCCCCCCccceEEEeeCCCCCccEEEEEeec
Q 003886 243 GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE--VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 319 (789)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~--~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~ 319 (789)
+++.||+-|+.+.. ...|. -....+........|... |+|++.-
T Consensus 375 ----------------------------g~s~vYv~~L~t~~~~~vkl~--ve~aaiprwrv~e~gdt~---ivyv~~a 420 (912)
T TIGR02171 375 ----------------------------GKSSVYVRNLNASGSGLVKLP--VENAAIPRWRVLENGDTV---IVYVSDA 420 (912)
T ss_pred ----------------------------CCceEEEEehhccCCCceEee--cccccccceEecCCCCeE---EEEEcCC
Confidence 35779998887543 33341 123334444556777764 8888743
No 321
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=97.36 E-value=0.019 Score=60.24 Aligned_cols=151 Identities=16% Similarity=0.122 Sum_probs=96.1
Q ss_pred ceEEEEEccCC--ceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhh
Q 003886 273 PSLFVININSG--EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (789)
Q Consensus 273 ~~l~v~d~~~g--~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (789)
..|.+||+.++ +..... ...+..+..++|.|=+.. |+-++. -+..|.++|++.
T Consensus 250 ~~L~iwD~R~~~~~~~~~~-~ah~~~vn~~~fnp~~~~----ilAT~S--------------~D~tV~LwDlRn------ 304 (422)
T KOG0264|consen 250 GKLMIWDTRSNTSKPSHSV-KAHSAEVNCVAFNPFNEF----ILATGS--------------ADKTVALWDLRN------ 304 (422)
T ss_pred CeEEEEEcCCCCCCCcccc-cccCCceeEEEeCCCCCc----eEEecc--------------CCCcEEEeechh------
Confidence 57899998853 332221 122446778999998887 766652 223688888841
Q ss_pred hhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceee--EEe
Q 003886 351 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVD--VIP 428 (789)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~--v~~ 428 (789)
-...+..+..+...+....|||+-..++-.+..+ .+|.+||+..-+..+......+ .-.
T Consensus 305 ---------L~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D----------~rl~vWDls~ig~eq~~eda~dgppEl 365 (422)
T KOG0264|consen 305 ---------LNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTD----------RRLNVWDLSRIGEEQSPEDAEDGPPEL 365 (422)
T ss_pred ---------cccCceeccCCCcceEEEEeCCCCCceeEecccC----------CcEEEEeccccccccChhhhccCCcce
Confidence 2235667777788899999999998887666433 4689999865333322111100 000
Q ss_pred eeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEE
Q 003886 429 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 474 (789)
Q Consensus 429 ~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~d 474 (789)
++. .|-....+..+.|.|..-.++.+...++..+||.+.
T Consensus 366 lF~-------HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 366 LFI-------HGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred eEE-------ecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 010 011223567889999999999998888888888764
No 322
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.35 E-value=0.022 Score=54.84 Aligned_cols=239 Identities=15% Similarity=0.103 Sum_probs=137.9
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
+.+.+..|.-||++.+..... ....+|+ .|...+.... ||. ......-|.|..+++-...++.
T Consensus 18 gaV~avryN~dGnY~ltcGsd-----rtvrLWNp~rg~liktYsg----hG~-----EVlD~~~s~Dnskf~s~GgDk~- 82 (307)
T KOG0316|consen 18 GAVRAVRYNVDGNYCLTCGSD-----RTVRLWNPLRGALIKTYSG----HGH-----EVLDAALSSDNSKFASCGGDKA- 82 (307)
T ss_pred cceEEEEEccCCCEEEEcCCC-----ceEEeecccccceeeeecC----CCc-----eeeeccccccccccccCCCCce-
Confidence 457889999999999876333 4788884 4444443322 111 1256777888888776555443
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCC-CCccceEEEeeCCCCCc
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-SLSVGQVVWAPLNEGLH 310 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~-~~~~~~~~wSPDg~~~~ 310 (789)
..+|+...++...++..+..-+....|.++-.-.+++.-+..+.+||-.+..++++.-+.. ...+.++..+ +..
T Consensus 83 -v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~he-- 157 (307)
T KOG0316|consen 83 -VQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHE-- 157 (307)
T ss_pred -EEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccE--
Confidence 2356666666666676666666666777776555666677889999977654443320111 1123333332 222
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCC--CCccCcceecCCCCEEEE
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES--ISSAFFPRFSPDGKFLVF 388 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~--~~~~~~p~~SpDG~~la~ 388 (789)
|+-.+ .+..+..+|+. .| +++.+ ...+....||+||+-++.
T Consensus 158 --IvaGS---------------~DGtvRtydiR-----------------~G---~l~sDy~g~pit~vs~s~d~nc~La 200 (307)
T KOG0316|consen 158 --IVAGS---------------VDGTVRTYDIR-----------------KG---TLSSDYFGHPITSVSFSKDGNCSLA 200 (307)
T ss_pred --EEeec---------------cCCcEEEEEee-----------------cc---eeehhhcCCcceeEEecCCCCEEEE
Confidence 44333 22356677772 22 22222 335788999999998877
Q ss_pred EecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeE
Q 003886 389 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 468 (789)
Q Consensus 389 ~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~ 468 (789)
.+... .|+++|-.+|+......+.... ++ -...+++ ++...+|+.+.+|
T Consensus 201 ~~l~s-----------tlrLlDk~tGklL~sYkGhkn~----------ey-------kldc~l~-qsdthV~sgSEDG-- 249 (307)
T KOG0316|consen 201 SSLDS-----------TLRLLDKETGKLLKSYKGHKNM----------EY-------KLDCCLN-QSDTHVFSGSEDG-- 249 (307)
T ss_pred eeccc-----------eeeecccchhHHHHHhcccccc----------ee-------eeeeeec-ccceeEEeccCCc--
Confidence 66554 5899998888775443333210 00 0122333 3345667776666
Q ss_pred EEEEEECCCCcE
Q 003886 469 VIISVNVSSGEL 480 (789)
Q Consensus 469 ~l~~~dl~tg~~ 480 (789)
.+|.+|+..+.+
T Consensus 250 ~Vy~wdLvd~~~ 261 (307)
T KOG0316|consen 250 KVYFWDLVDETQ 261 (307)
T ss_pred eEEEEEecccee
Confidence 456667655443
No 323
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=97.35 E-value=0.079 Score=59.19 Aligned_cols=214 Identities=15% Similarity=0.141 Sum_probs=120.0
Q ss_pred cceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccC
Q 003886 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (789)
Q Consensus 211 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (789)
..++.|||++.|||+-... +..+-.|.+.|+.+|+.....
T Consensus 132 g~~~~s~D~~~la~s~D~~---------------------------------------G~e~y~lr~kdL~tg~~~~d~- 171 (682)
T COG1770 132 GAASISPDHNLLAYSVDVL---------------------------------------GDEQYTLRFKDLATGEELPDE- 171 (682)
T ss_pred eeeeeCCCCceEEEEEecc---------------------------------------cccEEEEEEEecccccccchh-
Confidence 6788999999999975543 113467889999998764331
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCC
Q 003886 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 370 (789)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~ 370 (789)
-....+.++|++|++. ++|+..... .|+..||+..+.. ....-+.+.+.
T Consensus 172 --i~~~~~~~~Wa~d~~~----lfYt~~d~~----------~rp~kv~~h~~gt---------------~~~~d~lvyeE 220 (682)
T COG1770 172 --ITNTSGSFAWAADGKT----LFYTRLDEN----------HRPDKVWRHRLGT---------------PGSSDELVYEE 220 (682)
T ss_pred --hcccccceEEecCCCe----EEEEEEcCC----------CCcceEEEEecCC---------------CCCcceEEEEc
Confidence 1123678999999999 999874332 2667899988721 11333334332
Q ss_pred C--CccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCC
Q 003886 371 I--SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILS 448 (789)
Q Consensus 371 ~--~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~ 448 (789)
. ....+..=|...++|+...+.. .++.+++++.+..+... ..+.+ .+.+- .
T Consensus 221 ~d~~f~~~v~~s~s~~yi~i~~~~~--------~tsE~~ll~a~~p~~~p-----~vv~p---r~~g~-----------e 273 (682)
T COG1770 221 KDDRFFLSVGRSRSEAYIVISLGSH--------ITSEVRLLDADDPEAEP-----KVVLP---RENGV-----------E 273 (682)
T ss_pred CCCcEEEEeeeccCCceEEEEcCCC--------cceeEEEEecCCCCCce-----EEEEE---cCCCc-----------E
Confidence 2 2223334466677776665443 35678888876543321 11111 10000 0
Q ss_pred CccccCCCEEEEEEEeCC-eEEEEEEEC--CCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 449 NPWLSDGCTMLLSSIWGS-SQVIISVNV--SSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 449 ~~ws~Dg~~l~~~~~~~~-~~~l~~~dl--~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
..--.-|.++|+.++.++ ...|+...+ .....+.+.+.........++.-.++|+..+.....| .+++.+..++
T Consensus 274 Y~~eh~~d~f~i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp-~v~v~~~~~~ 350 (682)
T COG1770 274 YSVEHGGDRFYILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLP-RVVVRDRKTG 350 (682)
T ss_pred EeeeecCcEEEEEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCc-eEEEEecCCC
Confidence 011123667777777766 445666544 1122233333333233345566677777777666654 4555555433
No 324
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=97.33 E-value=0.018 Score=67.14 Aligned_cols=224 Identities=16% Similarity=0.227 Sum_probs=123.3
Q ss_pred ccEEEEeCCCCCeEEEEecCCC-----CCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecC
Q 003886 155 GASAVVPSPSGSKLLVVRNPEN-----ESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 229 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~ 229 (789)
.+..+..+|+|+.++|+...-+ ....+|.. ++...+........ ..+.|||||+.+++.....
T Consensus 14 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~~----------~~~~~spdg~~~~~~~~~~ 81 (620)
T COG1506 14 RVSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVS--DGKTVRLLTFGGGV----------SELRWSPDGSVLAFVSTDG 81 (620)
T ss_pred cccCcccCCCCceeEEeeccccccccccccceEEE--ecccccccccCCcc----------cccccCCCCCEEEEEeccC
Confidence 4668899999999999987521 22233332 22212122222222 6899999999999986321
Q ss_pred CCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCC
Q 003886 230 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGL 309 (789)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~ 309 (789)
. ...++++++.. | .+ ......+....|+|+|+.
T Consensus 82 ~----------------------------------------~~~~l~l~~~~-g---~~--~~~~~~v~~~~~~~~g~~- 114 (620)
T COG1506 82 G----------------------------------------RVAQLYLVDVG-G---LI--TKTAFGVSDARWSPDGDR- 114 (620)
T ss_pred C----------------------------------------CcceEEEEecC-C---ce--eeeecccccceeCCCCCe-
Confidence 0 23678888887 4 22 233456678899999999
Q ss_pred ccEEEEEeecCCceeeee----------eeec-c-CCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcc
Q 003886 310 HQYLVFVGWSSETRKLGI----------KYCY-N-RPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFP 377 (789)
Q Consensus 310 ~~~l~f~~~~~~~~~~g~----------~~~~-~-~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p 377 (789)
+++........+.+. .+.. . ....+|++|. ++ ....+.........+
T Consensus 115 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~-----------------~~-~~~~~~~~~~~~~~~ 173 (620)
T COG1506 115 ---IAFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDI-----------------ES-KLIKLGLGNLDVVSF 173 (620)
T ss_pred ---EEEEecccccccCCceeeeecccceeecCCCCcccceEEEcc-----------------Cc-ccccccCCCCceeee
Confidence 888432222122221 0001 1 3456777776 33 445555555667777
Q ss_pred eecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCE
Q 003886 378 RFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCT 457 (789)
Q Consensus 378 ~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~ 457 (789)
++.+|++.++.......... .....+.+...++....++.+.. ++..+.|.+||+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~gk~ 229 (620)
T COG1506 174 ATDGDGRLVASIRLDDDADP----WVTNLYVLIEGNGELESLTPGEG--------------------SISKLAFDADGKS 229 (620)
T ss_pred eeCCCCceeEEeeeccccCC----ceEeeEEEecCCCceEEEcCCCc--------------------eeeeeeeCCCCCe
Confidence 88888887777665542111 11233333333333322222111 2345678889997
Q ss_pred EEEEEEeCC-----eEEEEEEECCCCcEEE
Q 003886 458 MLLSSIWGS-----SQVIISVNVSSGELLR 482 (789)
Q Consensus 458 l~~~~~~~~-----~~~l~~~dl~tg~~~~ 482 (789)
+++...... ...++.++...++...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 259 (620)
T COG1506 230 IALLGTESDRGLAEGDFILLLDGELGEVDG 259 (620)
T ss_pred eEEeccCCccCccccceEEEEeccccccce
Confidence 777765433 1234444534454444
No 325
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.32 E-value=0.031 Score=59.49 Aligned_cols=82 Identities=20% Similarity=0.238 Sum_probs=54.6
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhh
Q 003886 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (789)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (789)
...+|+|.++.....+. .......-+.|||||.. |+..+. +..||++.++.
T Consensus 428 G~w~V~d~e~~~lv~~~--~d~~~ls~v~ysp~G~~----lAvgs~---------------d~~iyiy~Vs~-------- 478 (626)
T KOG2106|consen 428 GRWFVLDTETQDLVTIH--TDNEQLSVVRYSPDGAF----LAVGSH---------------DNHIYIYRVSA-------- 478 (626)
T ss_pred ceEEEEecccceeEEEE--ecCCceEEEEEcCCCCE----EEEecC---------------CCeEEEEEECC--------
Confidence 67889999987766663 23566778999999998 887762 22455554421
Q ss_pred hhhcCCCCCCCeeecCCCC-CccCcceecCCCCEEEEEe
Q 003886 353 ELKESSSEDLPVVNLTESI-SSAFFPRFSPDGKFLVFLS 390 (789)
Q Consensus 353 ~~~~~~~~~~~~~~Lt~~~-~~~~~p~~SpDG~~la~~s 390 (789)
++....++-... ..+....||+|+++|.-.+
T Consensus 479 -------~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S 510 (626)
T KOG2106|consen 479 -------NGRKYSRVGKCSGSPITHLDWSSDSQFLVSNS 510 (626)
T ss_pred -------CCcEEEEeeeecCceeEEeeecCCCceEEecc
Confidence 333444432222 4678899999999876544
No 326
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.32 E-value=0.016 Score=64.83 Aligned_cols=40 Identities=8% Similarity=-0.125 Sum_probs=25.8
Q ss_pred CceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEe
Q 003886 272 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 317 (789)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~ 317 (789)
...+-++|.++.++..- +.-+.......++|||++ +++++
T Consensus 214 ~~~vSvID~etmeV~~q--V~Vdgnpd~v~~spdGk~----afvTs 253 (635)
T PRK02888 214 RSLFTAVDAETMEVAWQ--VMVDGNLDNVDTDYDGKY----AFSTC 253 (635)
T ss_pred eEEEEEEECccceEEEE--EEeCCCcccceECCCCCE----EEEec
Confidence 36677889888765432 122224567799999997 55554
No 327
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.31 E-value=0.0035 Score=66.81 Aligned_cols=96 Identities=11% Similarity=0.205 Sum_probs=66.1
Q ss_pred cceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccC
Q 003886 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (789)
Q Consensus 211 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (789)
.+-.|||||.-|+.+.++ ..|..|... |-.+...
T Consensus 108 ~~gRW~~dGtgLlt~GED--------------------------------------------G~iKiWSrs-GMLRStl- 141 (737)
T KOG1524|consen 108 SSGRWSPDGAGLLTAGED--------------------------------------------GVIKIWSRS-GMLRSTV- 141 (737)
T ss_pred hhcccCCCCceeeeecCC--------------------------------------------ceEEEEecc-chHHHHH-
Confidence 688999999999887554 456666643 3332221
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCC
Q 003886 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 370 (789)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~ 370 (789)
......+..++|.|+++. ++|..- .++++-.+. ...++.+-..+
T Consensus 142 ~Q~~~~v~c~~W~p~S~~----vl~c~g----------------~h~~IKpL~----------------~n~k~i~WkAH 185 (737)
T KOG1524|consen 142 VQNEESIRCARWAPNSNS----IVFCQG----------------GHISIKPLA----------------ANSKIIRWRAH 185 (737)
T ss_pred hhcCceeEEEEECCCCCc----eEEecC----------------CeEEEeecc----------------cccceeEEecc
Confidence 233446788999999999 999861 267776662 23345555667
Q ss_pred CCccCcceecCCCCEEEE
Q 003886 371 ISSAFFPRFSPDGKFLVF 388 (789)
Q Consensus 371 ~~~~~~p~~SpDG~~la~ 388 (789)
++-+....|||....|+.
T Consensus 186 DGiiL~~~W~~~s~lI~s 203 (737)
T KOG1524|consen 186 DGLVLSLSWSTQSNIIAS 203 (737)
T ss_pred CcEEEEeecCccccceee
Confidence 788889999999887654
No 328
>KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms]
Probab=97.31 E-value=0.00023 Score=75.41 Aligned_cols=130 Identities=24% Similarity=0.269 Sum_probs=82.7
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHH-HHHHHHHC-CcEEEEEcCC-CCCCCCch-hhccCCC
Q 003886 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-SLAFLSSV-GYSLLIVNYR-GSLGFGEE-ALQSLPG 645 (789)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~-~~~~la~~-Gy~V~~~d~r-Gs~G~G~~-~~~~~~~ 645 (789)
+.|.+.+. ++.|. .++ .+.-++|+++||+......+... ....|+.. .-+|+.+||| |.-||=-- .....++
T Consensus 117 SEDCLYlN--VW~P~-~~p-~n~tVlVWiyGGGF~sGt~SLdvYdGk~la~~envIvVs~NYRvG~FGFL~l~~~~eaPG 192 (601)
T KOG4389|consen 117 SEDCLYLN--VWAPA-ADP-YNLTVLVWIYGGGFYSGTPSLDVYDGKFLAAVENVIVVSMNYRVGAFGFLYLPGHPEAPG 192 (601)
T ss_pred ChhceEEE--EeccC-CCC-CCceEEEEEEcCccccCCcceeeeccceeeeeccEEEEEeeeeeccceEEecCCCCCCCC
Confidence 34555555 44452 112 23339999999876544433221 34566654 4788999999 44333111 2233455
Q ss_pred CCCcccHHHHHHHHHHHHHcC---CCCCccEEEEEcCccHHHHHHHHHhCC---CceeEEEEeCCccc
Q 003886 646 KVGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLCN 707 (789)
Q Consensus 646 ~~~~~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~~~~~p---~~~~a~v~~~pv~~ 707 (789)
++| +-|+.-|++|+.++. .-|++||.|+|.|.|+..+..-+.. | ..|+.+|+.+|..+
T Consensus 193 NmG---l~DQqLAl~WV~~Ni~aFGGnp~~vTLFGESAGaASv~aHLls-P~S~glF~raIlQSGS~~ 256 (601)
T KOG4389|consen 193 NMG---LLDQQLALQWVQENIAAFGGNPSRVTLFGESAGAASVVAHLLS-PGSRGLFHRAILQSGSLN 256 (601)
T ss_pred ccc---hHHHHHHHHHHHHhHHHhCCCcceEEEeccccchhhhhheecC-CCchhhHHHHHhhcCCCC
Confidence 665 679999999998862 2589999999999999866543332 3 37888898888654
No 329
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=97.30 E-value=0.01 Score=59.33 Aligned_cols=186 Identities=11% Similarity=0.123 Sum_probs=104.1
Q ss_pred cceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccC
Q 003886 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (789)
Q Consensus 211 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (789)
....||+-|..||.... +..|.+||..|-.+-++
T Consensus 27 ~~~~Fs~~G~~lAvGc~--------------------------------------------nG~vvI~D~~T~~iar~-- 60 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCA--------------------------------------------NGRVVIYDFDTFRIARM-- 60 (405)
T ss_pred ceEEeccCcceeeeecc--------------------------------------------CCcEEEEEccccchhhh--
Confidence 68899999999998543 35688899888665554
Q ss_pred CCCC-CccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCC
Q 003886 291 IPKS-LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE 369 (789)
Q Consensus 291 ~~~~-~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~ 369 (789)
...+ ..+.+++||+||+. |+-.+ ++..+-.+|+. .+....++.-
T Consensus 61 lsaH~~pi~sl~WS~dgr~----LltsS---------------~D~si~lwDl~----------------~gs~l~rirf 105 (405)
T KOG1273|consen 61 LSAHVRPITSLCWSRDGRK----LLTSS---------------RDWSIKLWDLL----------------KGSPLKRIRF 105 (405)
T ss_pred hhccccceeEEEecCCCCE----eeeec---------------CCceeEEEecc----------------CCCceeEEEc
Confidence 3333 36789999999998 77665 34467777872 3333343321
Q ss_pred CCCccCcceecCCCCEEEEEe-cCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCC
Q 003886 370 SISSAFFPRFSPDGKFLVFLS-AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILS 448 (789)
Q Consensus 370 ~~~~~~~p~~SpDG~~la~~s-~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~ 448 (789)
...+....|.|-.+..+... .+. +-+++++.....+.+....+ .+.. .+...
T Consensus 106 -~spv~~~q~hp~k~n~~va~~~~~-----------sp~vi~~s~~~h~~Lp~d~d-----------~dln----~sas~ 158 (405)
T KOG1273|consen 106 -DSPVWGAQWHPRKRNKCVATIMEE-----------SPVVIDFSDPKHSVLPKDDD-----------GDLN----SSASH 158 (405)
T ss_pred -cCccceeeeccccCCeEEEEEecC-----------CcEEEEecCCceeeccCCCc-----------cccc----ccccc
Confidence 23456667777544333333 222 13444544322222222111 1110 11123
Q ss_pred CccccCCCEEEEEEEeCCeEEEEEEECCCCcEE---EecCCCCCceeEEeeecCCEEEEEEeC
Q 003886 449 NPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL---RITPAESNFSWSLLTLDGDNIIAVSSS 508 (789)
Q Consensus 449 ~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~---~lt~~~~~~~~~~~s~dg~~l~~~~ss 508 (789)
..|.+-|++|| +++..| .|..+|..|-++. +++... .+-...++..|+.+++..++
T Consensus 159 ~~fdr~g~yIi-tGtsKG--kllv~~a~t~e~vas~rits~~-~IK~I~~s~~g~~liiNtsD 217 (405)
T KOG1273|consen 159 GVFDRRGKYII-TGTSKG--KLLVYDAETLECVASFRITSVQ-AIKQIIVSRKGRFLIINTSD 217 (405)
T ss_pred ccccCCCCEEE-EecCcc--eEEEEecchheeeeeeeechhe-eeeEEEEeccCcEEEEecCC
Confidence 35788899775 443334 4555666565443 333322 23445678888887776654
No 330
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=97.30 E-value=0.00055 Score=75.01 Aligned_cols=90 Identities=19% Similarity=0.218 Sum_probs=65.8
Q ss_pred chhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHH
Q 003886 607 LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTT 686 (789)
Q Consensus 607 ~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~ 686 (789)
...|....+.|.+.||.+ ..|++| +|-+++... .....++++.+.++.+.++ ....+|.|+||||||.++.
T Consensus 107 ~~~~~~li~~L~~~GY~~-~~dL~g---~gYDwR~~~---~~~~~~~~Lk~lIe~~~~~--~g~~kV~LVGHSMGGlva~ 177 (440)
T PLN02733 107 VYYFHDMIEQLIKWGYKE-GKTLFG---FGYDFRQSN---RLPETMDGLKKKLETVYKA--SGGKKVNIISHSMGGLLVK 177 (440)
T ss_pred HHHHHHHHHHHHHcCCcc-CCCccc---CCCCccccc---cHHHHHHHHHHHHHHHHHH--cCCCCEEEEEECHhHHHHH
Confidence 456777889999999876 789887 666665421 1122356777777777665 3457899999999999999
Q ss_pred HHHHhCCCc----eeEEEEeCCc
Q 003886 687 HLIGQAPDK----FVAAAARNPL 705 (789)
Q Consensus 687 ~~~~~~p~~----~~a~v~~~pv 705 (789)
.++..+|+. ++..|+.++.
T Consensus 178 ~fl~~~p~~~~k~I~~~I~la~P 200 (440)
T PLN02733 178 CFMSLHSDVFEKYVNSWIAIAAP 200 (440)
T ss_pred HHHHHCCHhHHhHhccEEEECCC
Confidence 988887763 5677776654
No 331
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.28 E-value=0.073 Score=53.26 Aligned_cols=110 Identities=23% Similarity=0.312 Sum_probs=71.8
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~ 234 (789)
.++..+|||.-..++-...-+ +...+|++.+.|....- .-....|.+ ..+.||.||.+++..+-
T Consensus 29 sIS~l~FSP~~~~~~~A~SWD-~tVR~wevq~~g~~~~k--a~~~~~~Pv------L~v~WsddgskVf~g~~------- 92 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGSWD-GTVRIWEVQNSGQLVPK--AQQSHDGPV------LDVCWSDDGSKVFSGGC------- 92 (347)
T ss_pred chheeEeccccCceEEecccC-CceEEEEEecCCcccch--hhhccCCCe------EEEEEccCCceEEeecc-------
Confidence 488899999555554443333 55566776654443321 111222333 78999999987665433
Q ss_pred CccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEE
Q 003886 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 314 (789)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~ 314 (789)
+.++.+||+.++++.++ -..+..+....|-+-... ++|+
T Consensus 93 -------------------------------------Dk~~k~wDL~S~Q~~~v--~~Hd~pvkt~~wv~~~~~--~cl~ 131 (347)
T KOG0647|consen 93 -------------------------------------DKQAKLWDLASGQVSQV--AAHDAPVKTCHWVPGMNY--QCLV 131 (347)
T ss_pred -------------------------------------CCceEEEEccCCCeeee--eecccceeEEEEecCCCc--ceeE
Confidence 35678999999999888 556667888899887663 4477
Q ss_pred EEeecCC
Q 003886 315 FVGWSSE 321 (789)
Q Consensus 315 f~~~~~~ 321 (789)
-.+|+..
T Consensus 132 TGSWDKT 138 (347)
T KOG0647|consen 132 TGSWDKT 138 (347)
T ss_pred ecccccc
Confidence 7777655
No 332
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.26 E-value=0.0034 Score=69.60 Aligned_cols=194 Identities=15% Similarity=0.093 Sum_probs=116.8
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec-------CCceeEEEecCCCcccccc-CCCcccceeecCCCCEEEEE
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS-------QSQLEKEFHVPQTVHGSVY-ADGWFEGISWNSDETLIAYV 225 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-------~~~~~~~~~~~~~~~g~v~-~d~~~~~~~wSpDg~~la~~ 225 (789)
+.+...+.+|||+..+..+.+. ...+|+ .|...+++.+. |..+. .++...+++.||||+.||..
T Consensus 455 gaIWsi~~~pD~~g~vT~saDk-----tVkfWdf~l~~~~~gt~~k~lsl~---~~rtLel~ddvL~v~~Spdgk~LaVs 526 (888)
T KOG0306|consen 455 GAIWSISLSPDNKGFVTGSADK-----TVKFWDFKLVVSVPGTQKKVLSLK---HTRTLELEDDVLCVSVSPDGKLLAVS 526 (888)
T ss_pred cceeeeeecCCCCceEEecCCc-----EEEEEeEEEEeccCcccceeeeec---cceEEeccccEEEEEEcCCCcEEEEE
Confidence 5688899999999998876543 333441 23333322211 10110 12223799999999999987
Q ss_pred eecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeC
Q 003886 226 AEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPL 305 (789)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPD 305 (789)
--+.+...-+.+ .-+---..-.++-.+.....++|.....++..+..+.+|-++=|....-. ...+.++-.+.|-|+
T Consensus 527 LLdnTVkVyflD--tlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~-fAHdDSvm~V~F~P~ 603 (888)
T KOG0306|consen 527 LLDNTVKVYFLD--TLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSF-FAHDDSVMSVQFLPK 603 (888)
T ss_pred eccCeEEEEEec--ceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhh-hcccCceeEEEEccc
Confidence 655543321111 11111111122222333445667666667777888999988877654331 455667889999995
Q ss_pred CCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCE
Q 003886 306 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKF 385 (789)
Q Consensus 306 g~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~ 385 (789)
. . ++|++- +...+-.+|-. .=...+.|..+...+...+.+|+|.+
T Consensus 604 ~-~----~FFt~g--------------KD~kvKqWDg~----------------kFe~iq~L~~H~~ev~cLav~~~G~~ 648 (888)
T KOG0306|consen 604 T-H----LFFTCG--------------KDGKVKQWDGE----------------KFEEIQKLDGHHSEVWCLAVSPNGSF 648 (888)
T ss_pred c-e----eEEEec--------------CcceEEeechh----------------hhhhheeeccchheeeeeEEcCCCCe
Confidence 4 4 677762 23357777751 22356677777777888999999998
Q ss_pred EEEEecCC
Q 003886 386 LVFLSAKS 393 (789)
Q Consensus 386 la~~s~~~ 393 (789)
++..+.+.
T Consensus 649 vvs~shD~ 656 (888)
T KOG0306|consen 649 VVSSSHDK 656 (888)
T ss_pred EEeccCCc
Confidence 87766543
No 333
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=97.24 E-value=0.082 Score=50.40 Aligned_cols=129 Identities=15% Similarity=0.202 Sum_probs=67.5
Q ss_pred CCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecC
Q 003886 333 RPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 412 (789)
Q Consensus 333 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~ 412 (789)
.++.||..|.. .+.....+..+.+.+.. -+|-+|-.++..+.+ ..|..||+.
T Consensus 161 gdc~iy~tdc~----------------~g~~~~a~sghtghila-lyswn~~m~~sgsqd-----------ktirfwdlr 212 (350)
T KOG0641|consen 161 GDCKIYITDCG----------------RGQGFHALSGHTGHILA-LYSWNGAMFASGSQD-----------KTIRFWDLR 212 (350)
T ss_pred CcceEEEeecC----------------CCCcceeecCCcccEEE-EEEecCcEEEccCCC-----------ceEEEEeee
Confidence 46789999982 34445677766654432 233345544433322 357778874
Q ss_pred CCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEE-ecCCCCCce
Q 003886 413 TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR-ITPAESNFS 491 (789)
Q Consensus 413 ~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~-lt~~~~~~~ 491 (789)
-..- +.++... ..-.|+-.+.+..++..|.|+ |+.++..+...-|| |+.+|++.+ ..+...++.
T Consensus 213 v~~~----------v~~l~~~--~~~~glessavaav~vdpsgr-ll~sg~~dssc~ly--dirg~r~iq~f~phsadir 277 (350)
T KOG0641|consen 213 VNSC----------VNTLDND--FHDGGLESSAVAAVAVDPSGR-LLASGHADSSCMLY--DIRGGRMIQRFHPHSADIR 277 (350)
T ss_pred ccce----------eeeccCc--ccCCCcccceeEEEEECCCcc-eeeeccCCCceEEE--EeeCCceeeeeCCCcccee
Confidence 3221 1111110 011122223445667788887 55665555544555 555776544 444444555
Q ss_pred eEEeeecCCEEEE
Q 003886 492 WSLLTLDGDNIIA 504 (789)
Q Consensus 492 ~~~~s~dg~~l~~ 504 (789)
-.-|+|...+++.
T Consensus 278 ~vrfsp~a~yllt 290 (350)
T KOG0641|consen 278 CVRFSPGAHYLLT 290 (350)
T ss_pred EEEeCCCceEEEE
Confidence 5677876655543
No 334
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=97.21 E-value=0.00058 Score=47.19 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=23.6
Q ss_pred ceeecCCcceecccEEEEeCCCCCeEEEEecCCC-CCCeEE
Q 003886 143 TFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN-ESPIQF 182 (789)
Q Consensus 143 ~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~-~~~~~~ 182 (789)
++|..+ +....|+|||||++|+|+++..+ +..+||
T Consensus 3 ~~t~~~-----~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 3 QLTNSP-----GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EES-SS-----SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CcccCC-----ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 455554 45889999999999999998762 333443
No 335
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.18 E-value=0.049 Score=52.84 Aligned_cols=230 Identities=15% Similarity=0.142 Sum_probs=121.6
Q ss_pred CCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecC--CCCEEEEEeecCCCCCCCccCCCC
Q 003886 164 SGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNS--DETLIAYVAEEPSPSKPTFSLGST 241 (789)
Q Consensus 164 dG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSp--Dg~~la~~~~~~~~~~~~~~~~~~ 241 (789)
-|++||..+.+ +.-.+|.+...++...+.++. +..|+| ..+.|.. -|..||..+.+
T Consensus 22 ygkrlATcsSD--~tVkIf~v~~n~~s~ll~~L~-Gh~GPV------wqv~wahPk~G~iLAScsYD------------- 79 (299)
T KOG1332|consen 22 YGKRLATCSSD--GTVKIFEVRNNGQSKLLAELT-GHSGPV------WKVAWAHPKFGTILASCSYD------------- 79 (299)
T ss_pred hcceeeeecCC--ccEEEEEEcCCCCceeeeEec-CCCCCe------eEEeecccccCcEeeEeecC-------------
Confidence 48888877654 233455555555444444443 444555 6777865 68878776543
Q ss_pred CCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccC-CCCCCccceEEEeeCCCCCccEEEEEeecC
Q 003886 242 KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG-IPKSLSVGQVVWAPLNEGLHQYLVFVGWSS 320 (789)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~-~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~ 320 (789)
..+.+|.-++|...++.. ...+.++..++|.|.+-.. +++.+..+
T Consensus 80 -------------------------------gkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl---~LacasSD 125 (299)
T KOG1332|consen 80 -------------------------------GKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGL---LLACASSD 125 (299)
T ss_pred -------------------------------ceEEEEecCCCchhhhhhhhhhcccceeecccccccce---EEEEeeCC
Confidence 346677766765444411 2234578899999988761 34444222
Q ss_pred CceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCC--CeeecCCCCCccCcceecCC---C-----------C
Q 003886 321 ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL--PVVNLTESISSAFFPRFSPD---G-----------K 384 (789)
Q Consensus 321 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~Lt~~~~~~~~p~~SpD---G-----------~ 384 (789)
....|..++- +++ ..+....+...+.+..|.|- | +
T Consensus 126 ------------G~vsvl~~~~-----------------~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~k 176 (299)
T KOG1332|consen 126 ------------GKVSVLTYDS-----------------SGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVK 176 (299)
T ss_pred ------------CcEEEEEEcC-----------------CCCccchhhhhccccccceeeecCcCCCccccccCcccccc
Confidence 2223444443 211 12223334445777888875 5 2
Q ss_pred EEEEEecCCCCCCCCccccceeEEeecCCCCCCC--cccceeeEEeeeeccCCCCCccccccCCCCCccccCC---CEEE
Q 003886 385 FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS--SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG---CTML 459 (789)
Q Consensus 385 ~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~--~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg---~~l~ 459 (789)
+|+.... .+.+.+|+.+.+..+. ...+..+ -+..++|.|.- +.-+
T Consensus 177 rlvSgGc-----------Dn~VkiW~~~~~~w~~e~~l~~H~d-------------------wVRDVAwaP~~gl~~s~i 226 (299)
T KOG1332|consen 177 RLVSGGC-----------DNLVKIWKFDSDSWKLERTLEGHKD-------------------WVRDVAWAPSVGLPKSTI 226 (299)
T ss_pred eeeccCC-----------ccceeeeecCCcchhhhhhhhhcch-------------------hhhhhhhccccCCCceee
Confidence 2322221 1335555555432210 0111111 23466777743 3445
Q ss_pred EEEEeCCeEEEEEEECCCCcEE--EecCCCCCceeEEeeecCCEEEEEEeC
Q 003886 460 LSSIWGSSQVIISVNVSSGELL--RITPAESNFSWSLLTLDGDNIIAVSSS 508 (789)
Q Consensus 460 ~~~~~~~~~~l~~~dl~tg~~~--~lt~~~~~~~~~~~s~dg~~l~~~~ss 508 (789)
.+.+.+++.-||..+.+.++.+ .+..-........+|..|+.|.....+
T Consensus 227 AS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~Gd 277 (299)
T KOG1332|consen 227 ASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGD 277 (299)
T ss_pred EEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCC
Confidence 6667788888999885444322 232222233456889988877665543
No 336
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.0043 Score=64.45 Aligned_cols=150 Identities=16% Similarity=0.189 Sum_probs=86.2
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCC-ceeEEEecCCCccccccCCCcccceeecCCC---CEEEEEee
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQS-QLEKEFHVPQTVHGSVYADGWFEGISWNSDE---TLIAYVAE 227 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~-~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg---~~la~~~~ 227 (789)
+.+-...|||||+.|+++.... ..+| .+| ...+.+.. + .++.|...+|+-|+ ....+...
T Consensus 187 ~eV~DL~FS~dgk~lasig~d~------~~VW~~~~g~~~a~~t~~--~------k~~~~~~cRF~~d~~~~~l~laa~~ 252 (398)
T KOG0771|consen 187 AEVKDLDFSPDGKFLASIGADS------ARVWSVNTGAALARKTPF--S------KDEMFSSCRFSVDNAQETLRLAASQ 252 (398)
T ss_pred CccccceeCCCCcEEEEecCCc------eEEEEeccCchhhhcCCc--c------cchhhhhceecccCCCceEEEEEec
Confidence 4577899999999999996542 4556 233 22222221 1 23456889999988 33333322
Q ss_pred cCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEc-cCCceEeccCCCCCCccceEEEeeCC
Q 003886 228 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVINI-NSGEVQAVKGIPKSLSVGQVVWAPLN 306 (789)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~-~~g~~~~l~~~~~~~~~~~~~wSPDg 306 (789)
.+... -....+.+|+- .-.+.++. +...-.+..+.-|+||
T Consensus 253 ~~~~~-------------------------------------v~~~~~~~w~~~~~l~~~~~--~~~~~siSsl~VS~dG 293 (398)
T KOG0771|consen 253 FPGGG-------------------------------------VRLCDISLWSGSNFLRLRKK--IKRFKSISSLAVSDDG 293 (398)
T ss_pred CCCCc-------------------------------------eeEEEeeeeccccccchhhh--hhccCcceeEEEcCCC
Confidence 22110 01122333332 11233333 4445578899999999
Q ss_pred CCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCC--CCCccCcceecCCCC
Q 003886 307 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE--SISSAFFPRFSPDGK 384 (789)
Q Consensus 307 ~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~--~~~~~~~p~~SpDG~ 384 (789)
+. ++..+++. .+-+++. ..-+..++.. +.+.++...||||-+
T Consensus 294 kf----~AlGT~dG---------------sVai~~~-----------------~~lq~~~~vk~aH~~~VT~ltF~Pdsr 337 (398)
T KOG0771|consen 294 KF----LALGTMDG---------------SVAIYDA-----------------KSLQRLQYVKEAHLGFVTGLTFSPDSR 337 (398)
T ss_pred cE----EEEeccCC---------------cEEEEEe-----------------ceeeeeEeehhhheeeeeeEEEcCCcC
Confidence 98 77776432 4555554 2223323322 355789999999999
Q ss_pred EEEEEecC
Q 003886 385 FLVFLSAK 392 (789)
Q Consensus 385 ~la~~s~~ 392 (789)
.++-++..
T Consensus 338 ~~~svSs~ 345 (398)
T KOG0771|consen 338 YLASVSSD 345 (398)
T ss_pred cccccccC
Confidence 98876654
No 337
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=97.16 E-value=0.0055 Score=62.09 Aligned_cols=177 Identities=14% Similarity=0.115 Sum_probs=87.9
Q ss_pred EEEEEcCCCCCCCchhhHHHHHHHH-HCCc----EEEEEcCCCCCCCCchhhc----cCC---CCCCc-----ccHHHHH
Q 003886 594 LIVVLHGGPHSVSLSSYSKSLAFLS-SVGY----SLLIVNYRGSLGFGEEALQ----SLP---GKVGS-----QDVNDVL 656 (789)
Q Consensus 594 ~vv~~HGg~~~~~~~~~~~~~~~la-~~Gy----~V~~~d~rGs~G~G~~~~~----~~~---~~~~~-----~~~~D~~ 656 (789)
..||+||..++ ...|...++.+. +.|. .++.++.-|..-+...+.. .+- -.... ....-+.
T Consensus 13 PTifihG~~gt--~~s~~~mi~~~~~~~~~~~~~l~v~V~~~G~v~~~G~~~~~~~nPiIqV~F~~n~~~~~~~qa~wl~ 90 (255)
T PF06028_consen 13 PTIFIHGYGGT--ANSFNHMINRLENKQGVAQKVLTVTVSKNGKVKVSGKLSKNAKNPIIQVNFEDNRNANYKKQAKWLK 90 (255)
T ss_dssp EEEEE--TTGG--CCCCHHHHHHHHHCSTS-S-EEEEEEETTSEEEEES---TT-SS-EEEEEESSTT-CHHHHHHHHHH
T ss_pred cEEEECCCCCC--hhHHHHHHHHHHhhcCCCceEEEEEECCCCeEEEeeecCCCCCCCEEEEEecCCCcCCHHHHHHHHH
Confidence 35588996554 556777788886 5553 3444444443111111100 000 01111 1234466
Q ss_pred HHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCC-----ceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccc
Q 003886 657 TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGK 731 (789)
Q Consensus 657 ~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~-----~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (789)
+++.+|.++- .-+++-++||||||..++.++..+.. .+..+|.+++.++-... ...... . ..+..
T Consensus 91 ~vl~~L~~~Y--~~~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~~--~~~~~~--~-~~~~~--- 160 (255)
T PF06028_consen 91 KVLKYLKKKY--HFKKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGILG--MNDDQN--Q-NDLNK--- 160 (255)
T ss_dssp HHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTTC--CSC-TT--T-T-CST---
T ss_pred HHHHHHHHhc--CCCEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCcccc--ccccch--h-hhhcc---
Confidence 7788888773 45789999999999999998887421 45666766655442111 000000 0 00000
Q ss_pred cccCCCCChhhHHHHHhcCcc-ccCCCCCCCEEEEEeC------CCCCCChHHHHHHHHHCCC
Q 003886 732 DSFTESPSVEDLTRFHSKSPI-SHISKVKTPTIFLLGA------QDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~sp~-~~~~~i~~P~Lii~G~------~D~~vp~~~~~~l~~~l~~ 787 (789)
.+ |. .....|.+.-.. ..--.-...+|-|.|. .|-+||...++.+..-++.
T Consensus 161 ---~g-p~-~~~~~y~~l~~~~~~~~p~~i~VLnI~G~~~~g~~sDG~V~~~Ss~sl~~L~~~ 218 (255)
T PF06028_consen 161 ---NG-PK-SMTPMYQDLLKNRRKNFPKNIQVLNIYGDLEDGSNSDGIVPNASSLSLRYLLKN 218 (255)
T ss_dssp ---T--BS-S--HHHHHHHHTHGGGSTTT-EEEEEEEESBTTCSBTSSSBHHHHCTHHHHCTT
T ss_pred ---cC-Cc-ccCHHHHHHHHHHHhhCCCCeEEEEEecccCCCCCCCeEEeHHHHHHHHHHhhc
Confidence 01 11 111222211111 0111123579999998 8999999999888777754
No 338
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=97.14 E-value=0.035 Score=61.34 Aligned_cols=119 Identities=17% Similarity=0.142 Sum_probs=72.0
Q ss_pred ccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccC
Q 003886 296 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAF 375 (789)
Q Consensus 296 ~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~ 375 (789)
.+..++.||+|+- |+-.. +... .....|++++.. .-.+...|..+...++
T Consensus 527 Ev~~l~~s~~gnl----iASaC-KS~~---------~ehAvI~lw~t~----------------~W~~~~~L~~HsLTVT 576 (764)
T KOG1063|consen 527 EVYALAISPTGNL----IASAC-KSSL---------KEHAVIRLWNTA----------------NWLQVQELEGHSLTVT 576 (764)
T ss_pred eEEEEEecCCCCE----Eeehh-hhCC---------ccceEEEEEecc----------------chhhhheecccceEEE
Confidence 4557889999985 55443 2221 123467777752 2234456778888899
Q ss_pred cceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCC--Cc--ccceeeEEeeeeccCCCCCccccccCCCCCcc
Q 003886 376 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF--SS--LEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW 451 (789)
Q Consensus 376 ~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~--~~--t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~w 451 (789)
..+|||||++|+-.+.+. +..||-. ..+..- .. ......+ +-...|
T Consensus 577 ~l~FSpdg~~LLsvsRDR---------t~sl~~~--~~~~~~e~~fa~~k~HtRI-------------------IWdcsW 626 (764)
T KOG1063|consen 577 RLAFSPDGRYLLSVSRDR---------TVSLYEV--QEDIKDEFRFACLKAHTRI-------------------IWDCSW 626 (764)
T ss_pred EEEECCCCcEEEEeecCc---------eEEeeee--ecccchhhhhccccccceE-------------------EEEccc
Confidence 999999999999888664 2234433 111110 00 0111111 225579
Q ss_pred ccCCCEEEEEEEeCCeEEEEEEEC
Q 003886 452 LSDGCTMLLSSIWGSSQVIISVNV 475 (789)
Q Consensus 452 s~Dg~~l~~~~~~~~~~~l~~~dl 475 (789)
+||+++ +++++++-...+|...-
T Consensus 627 ~pde~~-FaTaSRDK~VkVW~~~~ 649 (764)
T KOG1063|consen 627 SPDEKY-FATASRDKKVKVWEEPD 649 (764)
T ss_pred Ccccce-eEEecCCceEEEEeccC
Confidence 999987 57777777778887653
No 339
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=97.14 E-value=0.02 Score=63.23 Aligned_cols=117 Identities=21% Similarity=0.286 Sum_probs=73.3
Q ss_pred cCCC-cccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCC
Q 003886 205 YADG-WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG 283 (789)
Q Consensus 205 ~~d~-~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g 283 (789)
|..+ ....+.-||+|+.||....... +....|++|+..+=
T Consensus 522 YGHGyEv~~l~~s~~gnliASaCKS~~---------------------------------------~ehAvI~lw~t~~W 562 (764)
T KOG1063|consen 522 YGHGYEVYALAISPTGNLIASACKSSL---------------------------------------KEHAVIRLWNTANW 562 (764)
T ss_pred ccCceeEEEEEecCCCCEEeehhhhCC---------------------------------------ccceEEEEEeccch
Confidence 4433 4467888999998887654321 13467999987664
Q ss_pred c-eEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCC
Q 003886 284 E-VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL 362 (789)
Q Consensus 284 ~-~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 362 (789)
. ...| ...++.+.+.+|||||+. |+-++. +|.-.||-..-. .. ..-
T Consensus 563 ~~~~~L--~~HsLTVT~l~FSpdg~~----LLsvsR-------------DRt~sl~~~~~~---~~-----------~e~ 609 (764)
T KOG1063|consen 563 LQVQEL--EGHSLTVTRLAFSPDGRY----LLSVSR-------------DRTVSLYEVQED---IK-----------DEF 609 (764)
T ss_pred hhhhee--cccceEEEEEEECCCCcE----EEEeec-------------CceEEeeeeecc---cc-----------hhh
Confidence 3 3345 455678999999999999 888872 122345544210 00 001
Q ss_pred CeeecCCCCCccCcceecCCCCEEEEEecCC
Q 003886 363 PVVNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (789)
Q Consensus 363 ~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~ 393 (789)
....+..+..-+..-.|+||+++++..|.+.
T Consensus 610 ~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK 640 (764)
T KOG1063|consen 610 RFACLKAHTRIIWDCSWSPDEKYFATASRDK 640 (764)
T ss_pred hhccccccceEEEEcccCcccceeEEecCCc
Confidence 1122444555677889999999977777554
No 340
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.0036 Score=72.71 Aligned_cols=250 Identities=13% Similarity=0.177 Sum_probs=136.3
Q ss_pred cEEEEeCCCCCe----EEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCC-EEEEEeec
Q 003886 156 ASAVVPSPSGSK----LLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDET-LIAYVAEE 228 (789)
Q Consensus 156 ~~~~~~SPdG~~----la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~-~la~~~~~ 228 (789)
-...+|++.|.. ||= ..++|.-.+|.... .+....++.....++|.| .++.|+|... .||-.+.+
T Consensus 67 F~kL~W~~~g~~~~GlIaG--G~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V------~gLDfN~~q~nlLASGa~~ 138 (1049)
T KOG0307|consen 67 FNKLAWGSYGSHSHGLIAG--GLEDGNIVLYDPASIIANASEEVLATKSKHTGPV------LGLDFNPFQGNLLASGADD 138 (1049)
T ss_pred ceeeeecccCCCccceeec--cccCCceEEecchhhccCcchHHHhhhcccCCce------eeeeccccCCceeeccCCC
Confidence 456789999988 332 22223322222221 233333333344566777 8899999877 66665554
Q ss_pred CCCCCCCccCCCCCCCCCCcC--CCCCCCcceeeCCcccc-cCCccCceEEEEEccCCc-eEeccCCCCCCccceEEEee
Q 003886 229 PSPSKPTFSLGSTKGGSSDKD--CNSWKGQGDWEEDWGET-YAGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAP 304 (789)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~g~~-~~~~~~~~l~v~d~~~g~-~~~l~~~~~~~~~~~~~wSP 304 (789)
.. ...|+....++...... ..+-+....|...-... .++.......+||+...+ +..+..+........+.|.|
T Consensus 139 ge--I~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP 216 (1049)
T KOG0307|consen 139 GE--ILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHP 216 (1049)
T ss_pred Cc--EEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCC
Confidence 43 23344221111111100 00111111222211111 122334578889997664 33332233334577999999
Q ss_pred CCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCC
Q 003886 305 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGK 384 (789)
Q Consensus 305 Dg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~ 384 (789)
|.-. -+.++.+++ +..-|-.+|++. .+...+.++.+...+....|++.+.
T Consensus 217 ~~aT----ql~~As~dd-----------~~PviqlWDlR~---------------assP~k~~~~H~~GilslsWc~~D~ 266 (1049)
T KOG0307|consen 217 DHAT----QLLVASGDD-----------SAPVIQLWDLRF---------------ASSPLKILEGHQRGILSLSWCPQDP 266 (1049)
T ss_pred CCce----eeeeecCCC-----------CCceeEeecccc---------------cCCchhhhcccccceeeeccCCCCc
Confidence 9876 444443322 223466666642 5666778888888899999999998
Q ss_pred EEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEe
Q 003886 385 FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW 464 (789)
Q Consensus 385 ~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~ 464 (789)
.++..+.++ +++.+|+.++++.. .-+....+.+| .+.|.|-.-.++..+.-
T Consensus 267 ~lllSsgkD----------~~ii~wN~~tgEvl----------~~~p~~~nW~f---------dv~w~pr~P~~~A~asf 317 (1049)
T KOG0307|consen 267 RLLLSSGKD----------NRIICWNPNTGEVL----------GELPAQGNWCF---------DVQWCPRNPSVMAAASF 317 (1049)
T ss_pred hhhhcccCC----------CCeeEecCCCceEe----------eecCCCCccee---------eeeecCCCcchhhhhee
Confidence 888888665 47999998886653 11111112222 34566655556556666
Q ss_pred CCeEEEEEEE
Q 003886 465 GSSQVIISVN 474 (789)
Q Consensus 465 ~~~~~l~~~d 474 (789)
+|...||.+-
T Consensus 318 dgkI~I~sl~ 327 (1049)
T KOG0307|consen 318 DGKISIYSLQ 327 (1049)
T ss_pred ccceeeeeee
Confidence 7777777764
No 341
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=97.12 E-value=0.00022 Score=75.73 Aligned_cols=92 Identities=15% Similarity=0.279 Sum_probs=59.9
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
+.+....|||||++||.|+.++ .+.|- +..++.-+. ...-|. +.++.||||||+|+...+++-.
T Consensus 291 g~in~f~FS~DG~~LA~VSqDG-----fLRvF~fdt~eLlg~m---kSYFGG------LLCvcWSPDGKyIvtGGEDDLV 356 (636)
T KOG2394|consen 291 GSINEFAFSPDGKYLATVSQDG-----FLRIFDFDTQELLGVM---KSYFGG------LLCVCWSPDGKYIVTGGEDDLV 356 (636)
T ss_pred ccccceeEcCCCceEEEEecCc-----eEEEeeccHHHHHHHH---Hhhccc------eEEEEEcCCccEEEecCCcceE
Confidence 4577889999999999998875 33333 222221111 111111 2689999999999998888754
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeC
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEE 261 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (789)
. .|....++..+.-..+++|+....|++
T Consensus 357 t--VwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 357 T--VWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred E--EEEeccceEEEeccccccceeeEeecc
Confidence 3 344444555555667888888777764
No 342
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.10 E-value=0.021 Score=62.03 Aligned_cols=237 Identities=15% Similarity=0.138 Sum_probs=123.0
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEE-eecCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV-AEEPS 230 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~-~~~~~ 230 (789)
+.+...+..|.|.+||-.++.+ ...|| .+|...+.+.+...+ .+++|+|.++.=+.+ +....
T Consensus 401 g~Vr~iSvdp~G~wlasGsdDG-----tvriWEi~TgRcvr~~~~d~~I----------~~vaw~P~~~~~vLAvA~~~~ 465 (733)
T KOG0650|consen 401 GLVRSISVDPSGEWLASGSDDG-----TVRIWEIATGRCVRTVQFDSEI----------RSVAWNPLSDLCVLAVAVGEC 465 (733)
T ss_pred CeEEEEEecCCcceeeecCCCC-----cEEEEEeecceEEEEEeeccee----------EEEEecCCCCceeEEEEecCc
Confidence 3477888999999999765543 45666 466677777765555 899999998763332 22221
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccC---Cc--eEeccCCCCCCccceEEEeeC
Q 003886 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS---GE--VQAVKGIPKSLSVGQVVWAPL 305 (789)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~---g~--~~~l~~~~~~~~~~~~~wSPD 305 (789)
.-..+...+.. ... ...+..+..- . .......++..|.... ++ +... +...-.+.++.|.-+
T Consensus 466 --~~ivnp~~G~~---~e~---~~t~ell~~~--~-~~~~p~~~~~~W~~~~~~e~~~~v~~~--I~~~k~i~~vtWHrk 532 (733)
T KOG0650|consen 466 --VLIVNPIFGDR---LEV---GPTKELLASA--P-NESEPDAAVVTWSRASLDELEKGVCIV--IKHPKSIRQVTWHRK 532 (733)
T ss_pred --eEEeCccccch---hhh---cchhhhhhcC--C-CccCCcccceeechhhhhhhccceEEE--EecCCccceeeeecC
Confidence 10111111100 000 0000000000 0 0000122444444331 11 2222 233446789999999
Q ss_pred CCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCE
Q 003886 306 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKF 385 (789)
Q Consensus 306 g~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~ 385 (789)
|.+ |+.+.-... ...+++.++. .......+....+.+....|.|---+
T Consensus 533 GDY----latV~~~~~------------~~~VliHQLS----------------K~~sQ~PF~kskG~vq~v~FHPs~p~ 580 (733)
T KOG0650|consen 533 GDY----LATVMPDSG------------NKSVLIHQLS----------------KRKSQSPFRKSKGLVQRVKFHPSKPY 580 (733)
T ss_pred Cce----EEEeccCCC------------cceEEEEecc----------------cccccCchhhcCCceeEEEecCCCce
Confidence 999 888874332 2367777772 11111223334556778889888777
Q ss_pred EEEEecCCCCCCCCccccceeEEeecCCCCCCC-cccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEe
Q 003886 386 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS-SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW 464 (789)
Q Consensus 386 la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~-~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~ 464 (789)
|+..+.+ .+.+||+..+.... +..+. ..+..++.+|.|..|++.+ .
T Consensus 581 lfVaTq~------------~vRiYdL~kqelvKkL~tg~--------------------kwiS~msihp~GDnli~gs-~ 627 (733)
T KOG0650|consen 581 LFVATQR------------SVRIYDLSKQELVKKLLTGS--------------------KWISSMSIHPNGDNLILGS-Y 627 (733)
T ss_pred EEEEecc------------ceEEEehhHHHHHHHHhcCC--------------------eeeeeeeecCCCCeEEEec-C
Confidence 7655544 48899987643321 11111 1244667888888887654 3
Q ss_pred CCeEEEEEEECCCCcEEEe
Q 003886 465 GSSQVIISVNVSSGELLRI 483 (789)
Q Consensus 465 ~~~~~l~~~dl~tg~~~~l 483 (789)
..+.-.|-+|+.+.-.+.+
T Consensus 628 d~k~~WfDldlsskPyk~l 646 (733)
T KOG0650|consen 628 DKKMCWFDLDLSSKPYKTL 646 (733)
T ss_pred CCeeEEEEcccCcchhHHh
Confidence 3333333444544444443
No 343
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=97.08 E-value=0.006 Score=61.19 Aligned_cols=98 Identities=13% Similarity=0.136 Sum_probs=50.6
Q ss_pred cceeecCCCCEEEEEeecCCCCCCCcc-CCCCCC-C--CCCcCCCCCCC-------cceee-------CCcccccCCccC
Q 003886 211 EGISWNSDETLIAYVAEEPSPSKPTFS-LGSTKG-G--SSDKDCNSWKG-------QGDWE-------EDWGETYAGKRQ 272 (789)
Q Consensus 211 ~~~~wSpDg~~la~~~~~~~~~~~~~~-~~~~~~-~--~~~~~~~~~~~-------~~~~~-------~d~g~~~~~~~~ 272 (789)
.+..|||||.-|+..+++..-...... ..+.+. . ...+.+..++. .+.|- |+-.--.+..+.
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 578999999999988877643221111 111111 1 11111222221 12221 111111233345
Q ss_pred ceEEEEEccCCceEeccCC----CCCCccceEEEeeCCCC
Q 003886 273 PSLFVININSGEVQAVKGI----PKSLSVGQVVWAPLNEG 308 (789)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~----~~~~~~~~~~wSPDg~~ 308 (789)
.-|.+||..+|+.+.-... ..-....++.|||||.+
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeq 172 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQ 172 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCe
Confidence 6799999999988754200 01114458899999998
No 344
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.07 E-value=0.14 Score=62.11 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=26.9
Q ss_pred CceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEe
Q 003886 272 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 317 (789)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~ 317 (789)
...|.||+.+ |+..... -+-+.-...++|-|.|.. |+-+.
T Consensus 236 ~R~iRVy~Re-G~L~stS-E~v~gLe~~l~WrPsG~l----IA~~q 275 (928)
T PF04762_consen 236 RRVIRVYSRE-GELQSTS-EPVDGLEGALSWRPSGNL----IASSQ 275 (928)
T ss_pred eeEEEEECCC-ceEEecc-ccCCCccCCccCCCCCCE----EEEEE
Confidence 4678888876 5555442 122334568899999998 87776
No 345
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.05 E-value=0.098 Score=63.37 Aligned_cols=62 Identities=18% Similarity=0.155 Sum_probs=42.1
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEE----e-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeec
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFEL----W-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 228 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i----~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~ 228 (789)
..+....+-+|...|.++...+ .++.+ . ...+.+-+-.+..++ .+.+||||+..||++...
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~G----di~~~~~~~~~~~~~~E~VG~vd~GI----------~a~~WSPD~Ella~vT~~ 141 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASG----DIILVREDPDPDEDEIEIVGSVDSGI----------LAASWSPDEELLALVTGE 141 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCc----eEEEEEccCCCCCceeEEEEEEcCcE----------EEEEECCCcCEEEEEeCC
Confidence 3477778888988888776654 36777 2 222333333444455 899999999999998755
Q ss_pred C
Q 003886 229 P 229 (789)
Q Consensus 229 ~ 229 (789)
.
T Consensus 142 ~ 142 (928)
T PF04762_consen 142 G 142 (928)
T ss_pred C
Confidence 3
No 346
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.04 E-value=0.045 Score=58.10 Aligned_cols=218 Identities=11% Similarity=0.087 Sum_probs=131.2
Q ss_pred CCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe
Q 003886 106 GNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW 185 (789)
Q Consensus 106 pdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~ 185 (789)
.||+.+|- +...+.+.++++.. -.-.+++..+. ..+....|+|++.+++....++ .+..+|
T Consensus 78 ~DG~Llaa---------GD~sG~V~vfD~k~-r~iLR~~~ah~-----apv~~~~f~~~d~t~l~s~sDd----~v~k~~ 138 (487)
T KOG0310|consen 78 SDGRLLAA---------GDESGHVKVFDMKS-RVILRQLYAHQ-----APVHVTKFSPQDNTMLVSGSDD----KVVKYW 138 (487)
T ss_pred cCCeEEEc---------cCCcCcEEEecccc-HHHHHHHhhcc-----CceeEEEecccCCeEEEecCCC----ceEEEE
Confidence 67766653 33455666666421 01123444444 2366778999999887654443 255566
Q ss_pred c-CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcc
Q 003886 186 S-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWG 264 (789)
Q Consensus 186 ~-~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g 264 (789)
+ .+... .+++. +..+.| .+.+|+|-..+|++...
T Consensus 139 d~s~a~v-~~~l~-~htDYV------R~g~~~~~~~hivvtGs------------------------------------- 173 (487)
T KOG0310|consen 139 DLSTAYV-QAELS-GHTDYV------RCGDISPANDHIVVTGS------------------------------------- 173 (487)
T ss_pred EcCCcEE-EEEec-CCccee------EeeccccCCCeEEEecC-------------------------------------
Confidence 2 22222 33332 333334 78999999988888532
Q ss_pred cccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEeccc
Q 003886 265 ETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSL 344 (789)
Q Consensus 265 ~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 344 (789)
-+..|.+||..+...+.+. ......+..+.+-|.|.. |+..+ ...+.++|+-
T Consensus 174 ------YDg~vrl~DtR~~~~~v~e-lnhg~pVe~vl~lpsgs~----iasAg----------------Gn~vkVWDl~- 225 (487)
T KOG0310|consen 174 ------YDGKVRLWDTRSLTSRVVE-LNHGCPVESVLALPSGSL----IASAG----------------GNSVKVWDLT- 225 (487)
T ss_pred ------CCceEEEEEeccCCceeEE-ecCCCceeeEEEcCCCCE----EEEcC----------------CCeEEEEEec-
Confidence 2356788887665333332 456678889999999987 77665 1267788872
Q ss_pred ccchhhhhhhhcCCCCCCCe-eecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccce
Q 003886 345 YKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI 423 (789)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~-~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~ 423 (789)
.+++. ....++.-.++..++.-||..|+-.+-+. ++.++|...
T Consensus 226 ---------------~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~-----------~VKVfd~t~---------- 269 (487)
T KOG0310|consen 226 ---------------TGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR-----------HVKVFDTTN---------- 269 (487)
T ss_pred ---------------CCceehhhhhcccceEEEEEeecCCceEeeccccc-----------ceEEEEccc----------
Confidence 23333 33344666788999999999887666443 477777432
Q ss_pred eeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEE
Q 003886 424 VDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 461 (789)
Q Consensus 424 ~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~ 461 (789)
..++.-+ .|| ..+.++..+||++.+++-
T Consensus 270 ~Kvv~s~------~~~----~pvLsiavs~dd~t~viG 297 (487)
T KOG0310|consen 270 YKVVHSW------KYP----GPVLSIAVSPDDQTVVIG 297 (487)
T ss_pred eEEEEee------ecc----cceeeEEecCCCceEEEe
Confidence 1223222 233 256778889998877653
No 347
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.17 Score=55.22 Aligned_cols=210 Identities=15% Similarity=0.141 Sum_probs=121.9
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~ 234 (789)
....+.+|+|++++..... ...+..++ ..........+.... ..+.++||++.++.+....
T Consensus 76 p~~i~v~~~~~~vyv~~~~---~~~v~vid~~~~~~~~~~~vG~~P----------~~~~~~~~~~~vYV~n~~~----- 137 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGD---SNTVSVIDTATNTVLGSIPVGLGP----------VGLAVDPDGKYVYVANAGN----- 137 (381)
T ss_pred ccceeeCCCCCeEEEecCC---CCeEEEEcCcccceeeEeeeccCC----------ceEEECCCCCEEEEEeccc-----
Confidence 3456789999987554322 22455666 332333333333233 5899999999887653211
Q ss_pred CccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEE
Q 003886 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 314 (789)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~ 314 (789)
....+.++|..++++... .+........+++|||+. +
T Consensus 138 ------------------------------------~~~~vsvid~~t~~~~~~--~~vG~~P~~~a~~p~g~~-----v 174 (381)
T COG3391 138 ------------------------------------GNNTVSVIDAATNKVTAT--IPVGNTPTGVAVDPDGNK-----V 174 (381)
T ss_pred ------------------------------------CCceEEEEeCCCCeEEEE--EecCCCcceEEECCCCCe-----E
Confidence 236788999988877655 333333478899999996 5
Q ss_pred EEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeee-----cCCCCCccCcceecCCCCEEEEE
Q 003886 315 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN-----LTESISSAFFPRFSPDGKFLVFL 389 (789)
Q Consensus 315 f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----Lt~~~~~~~~p~~SpDG~~la~~ 389 (789)
|+.+.. ...|..+|. .+....+ .-..........++|||++++..
T Consensus 175 yv~~~~-------------~~~v~vi~~-----------------~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~ 224 (381)
T COG3391 175 YVTNSD-------------DNTVSVIDT-----------------SGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVA 224 (381)
T ss_pred EEEecC-------------CCeEEEEeC-----------------CCcceeccccccccccCCCCceEEECCCCCEEEEE
Confidence 555422 236888886 3333332 11112245678999999976544
Q ss_pred ecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEE
Q 003886 390 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 469 (789)
Q Consensus 390 s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~ 469 (789)
-... ....+.++|..++......... . . . .......+|+|+.+|+.... ...
T Consensus 225 ~~~~--------~~~~v~~id~~~~~v~~~~~~~----~-----~-~--------~~~~v~~~p~g~~~yv~~~~--~~~ 276 (381)
T COG3391 225 NDGS--------GSNNVLKIDTATGNVTATDLPV----G-----S-G--------APRGVAVDPAGKAAYVANSQ--GGT 276 (381)
T ss_pred eccC--------CCceEEEEeCCCceEEEecccc----c-----c-C--------CCCceeECCCCCEEEEEecC--CCe
Confidence 4322 1246888887664432110000 0 0 0 11245678999988776544 446
Q ss_pred EEEEECCCCcEEEec
Q 003886 470 IISVNVSSGELLRIT 484 (789)
Q Consensus 470 l~~~dl~tg~~~~lt 484 (789)
+..+|..+..+....
T Consensus 277 V~vid~~~~~v~~~~ 291 (381)
T COG3391 277 VSVIDGATDRVVKTG 291 (381)
T ss_pred EEEEeCCCCceeeee
Confidence 777887776665543
No 348
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.042 Score=53.33 Aligned_cols=91 Identities=12% Similarity=0.070 Sum_probs=51.2
Q ss_pred eeecCCCCCccCcceecCCC----CEEEEEecCCCCCCCCccccceeEEeecC--CCCCCCcccceeeEEeeeeccCCCC
Q 003886 364 VVNLTESISSAFFPRFSPDG----KFLVFLSAKSSVDSGAHSATDSLHRIDWP--TNGNFSSLEKIVDVIPVVQCAEGDC 437 (789)
Q Consensus 364 ~~~Lt~~~~~~~~p~~SpDG----~~la~~s~~~~~~~g~~~~~~~L~~~d~~--~~~~~~~t~~~~~v~~~~~~~~~~~ 437 (789)
.+.|..+...++..+|.|.- .+||..+++. .+.+|.-. .+..+ .+ +. +.
T Consensus 200 e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg-----------~viIwt~~~e~e~wk-~t-----ll--------~~ 254 (299)
T KOG1332|consen 200 ERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDG-----------TVIIWTKDEEYEPWK-KT-----LL--------EE 254 (299)
T ss_pred hhhhhhcchhhhhhhhccccCCCceeeEEecCCC-----------cEEEEEecCccCccc-cc-----cc--------cc
Confidence 34577788888888898863 3466656543 24444322 11111 11 00 12
Q ss_pred CccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecC
Q 003886 438 FPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 485 (789)
Q Consensus 438 f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~ 485 (789)
||. -+.+..||.-|..|.+ +..+....||.=++ .|+.+++..
T Consensus 255 f~~----~~w~vSWS~sGn~LaV-s~GdNkvtlwke~~-~Gkw~~v~~ 296 (299)
T KOG1332|consen 255 FPD----VVWRVSWSLSGNILAV-SGGDNKVTLWKENV-DGKWEEVGE 296 (299)
T ss_pred CCc----ceEEEEEeccccEEEE-ecCCcEEEEEEeCC-CCcEEEccc
Confidence 221 2346789999985544 44556677887766 577766643
No 349
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=97.00 E-value=0.0046 Score=64.52 Aligned_cols=133 Identities=20% Similarity=0.295 Sum_probs=81.6
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHH----HHHHHHCCcEEEEEcCCC---CCCCCchhhccCC
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKS----LAFLSSVGYSLLIVNYRG---SLGFGEEALQSLP 644 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~----~~~la~~Gy~V~~~d~rG---s~G~G~~~~~~~~ 644 (789)
+..+++-.+..-..+-...+.|+.++. |.-+. ...|..+ ...-.+++-.+|.+++|= |.-||...... .
T Consensus 61 ~~~tF~qRylin~~fw~~g~gPIffYt-GNEGd--ie~Fa~ntGFm~D~Ap~~~AllVFaEHRyYGeS~PFG~~s~k~-~ 136 (492)
T KOG2183|consen 61 DNKTFDQRYLINDDFWKKGEGPIFFYT-GNEGD--IEWFANNTGFMWDLAPELKALLVFAEHRYYGESLPFGSQSYKD-A 136 (492)
T ss_pred CccceeeEEEEecccccCCCCceEEEe-CCccc--HHHHHhccchHHhhhHhhCceEEEeehhccccCCCCcchhccC-h
Confidence 445566556555554444446766664 42221 2222221 222336778899999983 22233331111 1
Q ss_pred CCCC----cccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEE-EeCCccch
Q 003886 645 GKVG----SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAA-ARNPLCNL 708 (789)
Q Consensus 645 ~~~~----~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v-~~~pv~~~ 708 (789)
.+.+ .+..+|.+..+.+|+.........|+++|+||||++++|.-.++|+.+.++. +.+|+.-+
T Consensus 137 ~hlgyLtseQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWfRlKYPHiv~GAlAaSAPvl~f 205 (492)
T KOG2183|consen 137 RHLGYLTSEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWFRLKYPHIVLGALAASAPVLYF 205 (492)
T ss_pred hhhccccHHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHHHhcChhhhhhhhhccCceEee
Confidence 2222 3346788888888887644567889999999999999999999999877654 45676544
No 350
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.98 E-value=0.12 Score=52.05 Aligned_cols=142 Identities=18% Similarity=0.222 Sum_probs=84.8
Q ss_pred CceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCC--eEEEEecCCCCCCeEEEEe
Q 003886 108 GTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGS--KLLVVRNPENESPIQFELW 185 (789)
Q Consensus 108 g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~--~la~~~~~~~~~~~~~~i~ 185 (789)
|..-+...+.+-++++...-.|.++++... .+.--|.... +.+.+..|+|+-. +|+-.++++ .+.+|
T Consensus 44 ~sitavAVs~~~~aSGssDetI~IYDm~k~-~qlg~ll~Ha-----gsitaL~F~~~~S~shLlS~sdDG-----~i~iw 112 (362)
T KOG0294|consen 44 GSITALAVSGPYVASGSSDETIHIYDMRKR-KQLGILLSHA-----GSITALKFYPPLSKSHLLSGSDDG-----HIIIW 112 (362)
T ss_pred cceeEEEecceeEeccCCCCcEEEEeccch-hhhcceeccc-----cceEEEEecCCcchhheeeecCCC-----cEEEE
Confidence 333344445555566667778888887433 2222222222 5577888888876 777665554 56788
Q ss_pred cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCccc
Q 003886 186 SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGE 265 (789)
Q Consensus 186 ~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~ 265 (789)
..+....+-.+. ...+.| ..++..|-|+ ||....
T Consensus 113 ~~~~W~~~~slK-~H~~~V------t~lsiHPS~K-LALsVg-------------------------------------- 146 (362)
T KOG0294|consen 113 RVGSWELLKSLK-AHKGQV------TDLSIHPSGK-LALSVG-------------------------------------- 146 (362)
T ss_pred EcCCeEEeeeec-cccccc------ceeEecCCCc-eEEEEc--------------------------------------
Confidence 666553333332 222334 7899999997 554422
Q ss_pred ccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEe
Q 003886 266 TYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 317 (789)
Q Consensus 266 ~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~ 317 (789)
++..|..||+-.|+.-.+ .+-.-....+.|+|.|.+ .+.+.
T Consensus 147 -----~D~~lr~WNLV~Gr~a~v--~~L~~~at~v~w~~~Gd~----F~v~~ 187 (362)
T KOG0294|consen 147 -----GDQVLRTWNLVRGRVAFV--LNLKNKATLVSWSPQGDH----FVVSG 187 (362)
T ss_pred -----CCceeeeehhhcCcccee--eccCCcceeeEEcCCCCE----EEEEe
Confidence 235677888877765444 222333456999999998 66655
No 351
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=96.94 E-value=0.0068 Score=61.04 Aligned_cols=115 Identities=9% Similarity=0.124 Sum_probs=66.9
Q ss_pred CCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCc--EEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcC
Q 003886 589 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGY--SLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG 666 (789)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy--~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~ 666 (789)
.....++||+||.-.+ .........+.....|+ .++.+..++.+. -..+.. ..........++...++.|.+.
T Consensus 15 ~~~~~vlvfVHGyn~~-f~~a~~r~aql~~~~~~~~~~i~FsWPS~g~-~~~Y~~--d~~~a~~s~~~l~~~L~~L~~~- 89 (233)
T PF05990_consen 15 SPDKEVLVFVHGYNNS-FEDALRRAAQLAHDLGFPGVVILFSWPSDGS-LLGYFY--DRESARFSGPALARFLRDLARA- 89 (233)
T ss_pred CCCCeEEEEEeCCCCC-HHHHHHHHHHHHHHhCCCceEEEEEcCCCCC-hhhhhh--hhhhHHHHHHHHHHHHHHHHhc-
Confidence 3467899999994443 11122223333344444 788888874221 111110 0011112234555566665555
Q ss_pred CCCCccEEEEEcCccHHHHHHHHHh----CC-----CceeEEEEeCCccchh
Q 003886 667 LANPSKVTVVGGSHGGFLTTHLIGQ----AP-----DKFVAAAARNPLCNLA 709 (789)
Q Consensus 667 ~~d~~rv~l~G~S~GG~~a~~~~~~----~p-----~~~~a~v~~~pv~~~~ 709 (789)
....+|.|++||||+.+.+.++.. .+ .+|..+|+.+|-.+..
T Consensus 90 -~~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid~d 140 (233)
T PF05990_consen 90 -PGIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDIDND 140 (233)
T ss_pred -cCCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCCHH
Confidence 356899999999999999987653 11 2677888888876653
No 352
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=96.94 E-value=0.038 Score=57.79 Aligned_cols=186 Identities=12% Similarity=0.112 Sum_probs=109.0
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CC-ceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWS--QS-QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~-~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
.+......|.|+|++..++++ .|...+ +| ...++.+-..++ .+....|.|||-.++....+ .
T Consensus 305 ~V~~ls~h~tgeYllsAs~d~-----~w~Fsd~~~g~~lt~vs~~~s~v--------~~ts~~fHpDgLifgtgt~d--~ 369 (506)
T KOG0289|consen 305 PVTGLSLHPTGEYLLSASNDG-----TWAFSDISSGSQLTVVSDETSDV--------EYTSAAFHPDGLIFGTGTPD--G 369 (506)
T ss_pred cceeeeeccCCcEEEEecCCc-----eEEEEEccCCcEEEEEeeccccc--------eeEEeeEcCCceEEeccCCC--c
Confidence 366778999999999887765 555553 22 233333211111 23688999999544433333 3
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCc-eEeccCCCCCCccceEEEeeCCCCCc
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGLH 310 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~-~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (789)
....|+.........++.+..-+....|++++=-..+...+..+++||+..-+ .+.+. .+....+..+.|.+.|+.
T Consensus 370 ~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~-l~~~~~v~s~~fD~SGt~-- 446 (506)
T KOG0289|consen 370 VVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ-LDEKKEVNSLSFDQSGTY-- 446 (506)
T ss_pred eEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceee-ccccccceeEEEcCCCCe--
Confidence 33456654455556666666656566677663222233345569999986543 22221 233346778999999998
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC---eeecCCCCCccCcceecCCCCEEE
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP---VVNLTESISSAFFPRFSPDGKFLV 387 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~Lt~~~~~~~~p~~SpDG~~la 387 (789)
|+..+. .-.||.++- .+.. ...+..+.+-....+|-.+-++|+
T Consensus 447 --L~~~g~---------------~l~Vy~~~k-----------------~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~ 492 (506)
T KOG0289|consen 447 --LGIAGS---------------DLQVYICKK-----------------KTKSWTEIKELADHSGLSTGVRFGEHAQYLA 492 (506)
T ss_pred --EEeecc---------------eeEEEEEec-----------------ccccceeeehhhhcccccceeeecccceEEe
Confidence 776652 225666653 2332 334444555567778887777777
Q ss_pred EEecC
Q 003886 388 FLSAK 392 (789)
Q Consensus 388 ~~s~~ 392 (789)
-.+++
T Consensus 493 s~smd 497 (506)
T KOG0289|consen 493 STSMD 497 (506)
T ss_pred eccch
Confidence 66654
No 353
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=96.94 E-value=0.0076 Score=60.76 Aligned_cols=97 Identities=14% Similarity=0.130 Sum_probs=64.1
Q ss_pred EEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHH-HHHHHHHcCCCCCcc
Q 003886 594 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLT-AIDHVIDMGLANPSK 672 (789)
Q Consensus 594 ~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~-~i~~l~~~~~~d~~r 672 (789)
.|+++|++.+ ....|....+.|...++.|+.++++|.. .+. ....+++++++ .++.+.+. ....+
T Consensus 2 ~lf~~p~~gG--~~~~y~~la~~l~~~~~~v~~i~~~~~~-~~~---------~~~~si~~la~~y~~~I~~~--~~~gp 67 (229)
T PF00975_consen 2 PLFCFPPAGG--SASSYRPLARALPDDVIGVYGIEYPGRG-DDE---------PPPDSIEELASRYAEAIRAR--QPEGP 67 (229)
T ss_dssp EEEEESSTTC--SGGGGHHHHHHHTTTEEEEEEECSTTSC-TTS---------HEESSHHHHHHHHHHHHHHH--TSSSS
T ss_pred eEEEEcCCcc--CHHHHHHHHHhCCCCeEEEEEEecCCCC-CCC---------CCCCCHHHHHHHHHHHhhhh--CCCCC
Confidence 5788898776 3667877888887657899999998732 111 11233555544 34444443 23348
Q ss_pred EEEEEcCccHHHHHHHHHhC---CCceeEEEEeCC
Q 003886 673 VTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNP 704 (789)
Q Consensus 673 v~l~G~S~GG~~a~~~~~~~---p~~~~a~v~~~p 704 (789)
+.|+|||+||.+|..+|.+- -..+..+++..+
T Consensus 68 ~~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD~ 102 (229)
T PF00975_consen 68 YVLAGWSFGGILAFEMARQLEEAGEEVSRLILIDS 102 (229)
T ss_dssp EEEEEETHHHHHHHHHHHHHHHTT-SESEEEEESC
T ss_pred eeehccCccHHHHHHHHHHHHHhhhccCceEEecC
Confidence 99999999999999988652 234777777763
No 354
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.93 E-value=0.042 Score=52.95 Aligned_cols=234 Identities=14% Similarity=0.092 Sum_probs=120.5
Q ss_pred cceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccC
Q 003886 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (789)
Q Consensus 211 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (789)
..+.+.-||++.+....+++.+ .|+...+...+....+..-+.+..-+-|-....+..++..+++||+++|++.+-
T Consensus 21 ~avryN~dGnY~ltcGsdrtvr--LWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr-- 96 (307)
T KOG0316|consen 21 RAVRYNVDGNYCLTCGSDRTVR--LWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRR-- 96 (307)
T ss_pred EEEEEccCCCEEEEcCCCceEE--eecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeee--
Confidence 7788999999877766665443 455332222222222211111111122222233445678999999999987544
Q ss_pred CCC-CCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeec-C
Q 003886 291 IPK-SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-T 368 (789)
Q Consensus 291 ~~~-~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L-t 368 (789)
..+ ...+..+.|..++. +++.+. .++.+..+|..+ ..-++.++ .
T Consensus 97 ~rgH~aqVNtV~fNeesS-----Vv~Sgs--------------fD~s~r~wDCRS---------------~s~ePiQild 142 (307)
T KOG0316|consen 97 FRGHLAQVNTVRFNEESS-----VVASGS--------------FDSSVRLWDCRS---------------RSFEPIQILD 142 (307)
T ss_pred cccccceeeEEEecCcce-----EEEecc--------------ccceeEEEEccc---------------CCCCccchhh
Confidence 233 33677888877765 666552 234566677632 23333333 2
Q ss_pred CCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCC
Q 003886 369 ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILS 448 (789)
Q Consensus 369 ~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~ 448 (789)
+....+.+...+ +..|+--+.+ ..+..+|+..|.... + .....+..
T Consensus 143 ea~D~V~Si~v~--~heIvaGS~D-----------GtvRtydiR~G~l~s------D---------------y~g~pit~ 188 (307)
T KOG0316|consen 143 EAKDGVSSIDVA--EHEIVAGSVD-----------GTVRTYDIRKGTLSS------D---------------YFGHPITS 188 (307)
T ss_pred hhcCceeEEEec--ccEEEeeccC-----------CcEEEEEeecceeeh------h---------------hcCCccee
Confidence 223334444443 3344444433 247777876554320 0 01123557
Q ss_pred CccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCcee-EEee-ecCCEEEEEEeCCCCCCeEEEEeecc
Q 003886 449 NPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSW-SLLT-LDGDNIIAVSSSPVDVPQVKYGYFVD 522 (789)
Q Consensus 449 ~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~-~~~s-~dg~~l~~~~ss~~~p~~i~~~~~~~ 522 (789)
..|++||.-.+.. .-++ .|-.+|-.||++-....++-.... ...+ ......++..+... .+|+.|+..
T Consensus 189 vs~s~d~nc~La~-~l~s--tlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG---~Vy~wdLvd 258 (307)
T KOG0316|consen 189 VSFSKDGNCSLAS-SLDS--TLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDG---KVYFWDLVD 258 (307)
T ss_pred EEecCCCCEEEEe-eccc--eeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCc---eEEEEEecc
Confidence 7899999965543 3333 455578888987665544431111 1111 12334444444332 366666654
No 355
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=96.92 E-value=0.18 Score=57.47 Aligned_cols=67 Identities=18% Similarity=0.283 Sum_probs=46.1
Q ss_pred ccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEe-cCCCccccccCCCcccceeecC
Q 003886 141 SVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFH-VPQTVHGSVYADGWFEGISWNS 217 (789)
Q Consensus 141 ~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~-~~~~~~g~v~~d~~~~~~~wSp 217 (789)
.+.+-|+. ..+...+||+||.+|+-. |...++++|. +++ ++.+. +...+ ..+.|||
T Consensus 244 ~t~lHWH~-----~~V~~L~fS~~G~~LlSG-----G~E~VLv~Wq~~T~~-kqfLPRLgs~I----------~~i~vS~ 302 (792)
T KOG1963|consen 244 CTLLHWHH-----DEVNSLSFSSDGAYLLSG-----GREGVLVLWQLETGK-KQFLPRLGSPI----------LHIVVSP 302 (792)
T ss_pred ceEEEecc-----cccceeEEecCCceEeec-----ccceEEEEEeecCCC-cccccccCCee----------EEEEEcC
Confidence 45566764 458889999999999853 4556899993 333 44332 22222 7899999
Q ss_pred CCCEEEEEeec
Q 003886 218 DETLIAYVAEE 228 (789)
Q Consensus 218 Dg~~la~~~~~ 228 (789)
|+...+.+.++
T Consensus 303 ds~~~sl~~~D 313 (792)
T KOG1963|consen 303 DSDLYSLVLED 313 (792)
T ss_pred CCCeEEEEecC
Confidence 99988777654
No 356
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.89 E-value=0.026 Score=58.99 Aligned_cols=77 Identities=17% Similarity=0.086 Sum_probs=43.1
Q ss_pred CcceecCCCCEEEEEecC---CCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCcc
Q 003886 375 FFPRFSPDGKFLVFLSAK---SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW 451 (789)
Q Consensus 375 ~~p~~SpDG~~la~~s~~---~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~w 451 (789)
......|||. ++|..+. ... ........||++|..++..+.+.... . ....++|
T Consensus 114 ND~~v~pdG~-~wfgt~~~~~~~~--~~~~~~G~lyr~~p~g~~~~l~~~~~-------------~-------~~NGla~ 170 (307)
T COG3386 114 NDGVVDPDGR-IWFGDMGYFDLGK--SEERPTGSLYRVDPDGGVVRLLDDDL-------------T-------IPNGLAF 170 (307)
T ss_pred CceeEcCCCC-EEEeCCCccccCc--cccCCcceEEEEcCCCCEEEeecCcE-------------E-------ecCceEE
Confidence 3457789987 5666655 111 11112337999986443332221111 0 1247899
Q ss_pred ccCCCEEEEEEEeCCeEEEEEEECC
Q 003886 452 LSDGCTMLLSSIWGSSQVIISVNVS 476 (789)
Q Consensus 452 s~Dg~~l~~~~~~~~~~~l~~~dl~ 476 (789)
||||+.+|++-+.. ..|++++.+
T Consensus 171 SpDg~tly~aDT~~--~~i~r~~~d 193 (307)
T COG3386 171 SPDGKTLYVADTPA--NRIHRYDLD 193 (307)
T ss_pred CCCCCEEEEEeCCC--CeEEEEecC
Confidence 99999998875443 456666553
No 357
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=96.87 E-value=0.022 Score=57.33 Aligned_cols=215 Identities=14% Similarity=0.110 Sum_probs=103.4
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~ 234 (789)
.+..-+|++|+..+|...+.. ...+|.. .+.+.-+..+..... |....++.|+|.+.+|+-.+.++..-.+
T Consensus 12 pitchAwn~drt~iAv~~~~~--evhiy~~-~~~~~w~~~htls~H------d~~vtgvdWap~snrIvtcs~drnayVw 82 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNNH--EVHIYSM-LGADLWEPAHTLSEH------DKIVTGVDWAPKSNRIVTCSHDRNAYVW 82 (361)
T ss_pred ceeeeeecCCCceEEeccCCc--eEEEEEe-cCCCCceeceehhhh------CcceeEEeecCCCCceeEccCCCCcccc
Confidence 467789999999999877653 1122222 233323333332222 1123789999999999988877654322
Q ss_pred CccCCCCCCCCCCcCC---CCCC---CcceeeCCcccccCCccCceEEEEEccCCce---EeccCCCCCCccceEEEeeC
Q 003886 235 TFSLGSTKGGSSDKDC---NSWK---GQGDWEEDWGETYAGKRQPSLFVININSGEV---QAVKGIPKSLSVGQVVWAPL 305 (789)
Q Consensus 235 ~~~~~~~~~~~~~~~~---~~~~---~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~---~~l~~~~~~~~~~~~~wSPD 305 (789)
.. . .+..++.. .... .-..|+|....-.++.+...|-|+-.+...- ....+.+-...+....|.|+
T Consensus 83 ~~--~---~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn 157 (361)
T KOG1523|consen 83 TQ--P---SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN 157 (361)
T ss_pred cc--C---CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCC
Confidence 21 1 11111100 0000 0123555433333333334444444433221 11111333446678899998
Q ss_pred CCCCccEEEEEeecCCceeeeeeeeccCCcc---eEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCC
Q 003886 306 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCA---LYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPD 382 (789)
Q Consensus 306 g~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~---l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpD 382 (789)
+-. |+..+-+ ..+. .|+-+++ ++....+-.++..-+..........+.+....|||+
T Consensus 158 nVL----laaGs~D-------------~k~rVfSayIK~Vd---ekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s 217 (361)
T KOG1523|consen 158 NVL----LAAGSTD-------------GKCRVFSAYIKGVD---EKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS 217 (361)
T ss_pred cce----ecccccC-------------cceeEEEEeeeccc---cCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC
Confidence 764 4443311 1122 3333331 111000000000001111222234566888999999
Q ss_pred CCEEEEEecCCCCCCCCccccceeEEeecCCC
Q 003886 383 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (789)
Q Consensus 383 G~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~ 414 (789)
|..|+|.+.++ .+.+.|-.+.
T Consensus 218 G~~lawv~Hds-----------~v~~~da~~p 238 (361)
T KOG1523|consen 218 GNRLAWVGHDS-----------TVSFVDAAGP 238 (361)
T ss_pred CCEeeEecCCC-----------ceEEeecCCC
Confidence 99999999775 3666665543
No 358
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.87 E-value=0.12 Score=63.97 Aligned_cols=85 Identities=12% Similarity=0.115 Sum_probs=43.8
Q ss_pred CcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCccccee-eEEeeeeccCCCCCccccccCCCCCcccc
Q 003886 375 FFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV-DVIPVVQCAEGDCFPGLYSSSILSNPWLS 453 (789)
Q Consensus 375 ~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~-~v~~~~~~~~~~~f~g~~~~~~~~~~ws~ 453 (789)
...++++||+ | |++... ..+|.++|..++....+..... ...+ .......| .....+++++
T Consensus 807 ~Gvavd~dG~-L-YVADs~---------N~rIrviD~~tg~v~tiaG~G~~G~~d--G~~~~a~l-----~~P~GIavd~ 868 (1057)
T PLN02919 807 LGVLCAKDGQ-I-YVADSY---------NHKIKKLDPATKRVTTLAGTGKAGFKD--GKALKAQL-----SEPAGLALGE 868 (1057)
T ss_pred ceeeEeCCCc-E-EEEECC---------CCEEEEEECCCCeEEEEeccCCcCCCC--Cccccccc-----CCceEEEEeC
Confidence 4667899997 3 455432 3579999987654321110000 0000 00000111 1234667889
Q ss_pred CCCEEEEEEEeCCeEEEEEEECCCCcE
Q 003886 454 DGCTMLLSSIWGSSQVIISVNVSSGEL 480 (789)
Q Consensus 454 Dg~~l~~~~~~~~~~~l~~~dl~tg~~ 480 (789)
||+ ||++. .+...|..+|+.+++.
T Consensus 869 dG~-lyVaD--t~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 869 NGR-LFVAD--TNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCC-EEEEE--CCCCEEEEEECCCCcc
Confidence 996 66653 3334567778878765
No 359
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=96.86 E-value=0.047 Score=60.23 Aligned_cols=164 Identities=16% Similarity=0.157 Sum_probs=101.3
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
..+..-+.||||+.|++..-.. ..+|.+...+ ..+++.+.....- --.-..+.|+-|+.++++++.+
T Consensus 383 ~nIs~~aiSPdg~~Ia~st~~~---~~iy~L~~~~-~vk~~~v~~~~~~----~~~a~~i~ftid~~k~~~~s~~----- 449 (691)
T KOG2048|consen 383 ENISCAAISPDGNLIAISTVSR---TKIYRLQPDP-NVKVINVDDVPLA----LLDASAISFTIDKNKLFLVSKN----- 449 (691)
T ss_pred cceeeeccCCCCCEEEEeeccc---eEEEEeccCc-ceeEEEeccchhh----hccceeeEEEecCceEEEEecc-----
Confidence 4577788999999999965322 2366666333 3444433211100 0001578899999999998732
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCC---CCCccceEEEeeCCCCCc
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP---KSLSVGQVVWAPLNEGLH 310 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~---~~~~~~~~~wSPDg~~~~ 310 (789)
..+|..+++++...+.+.+.. .--.+..++-||||++
T Consensus 450 --------------------------------------~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~y-- 489 (691)
T KOG2048|consen 450 --------------------------------------IFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNY-- 489 (691)
T ss_pred --------------------------------------cceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCE--
Confidence 245666676665544442111 1235678899999999
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecC-CCCCccCcceecC-CCCEEEE
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSP-DGKFLVF 388 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt-~~~~~~~~p~~Sp-DG~~la~ 388 (789)
|+..+ ....|+++++ ++.+.+.|. .-....+...++| +-+.|+.
T Consensus 490 --iaa~~---------------t~g~I~v~nl-----------------~~~~~~~l~~rln~~vTa~~~~~~~~~~lvv 535 (691)
T KOG2048|consen 490 --IAAIS---------------TRGQIFVYNL-----------------ETLESHLLKVRLNIDVTAAAFSPFVRNRLVV 535 (691)
T ss_pred --EEEEe---------------ccceEEEEEc-----------------ccceeecchhccCcceeeeeccccccCcEEE
Confidence 88876 2347999998 677666655 2245577778885 4455655
Q ss_pred EecCCCCCCCCccccceeEEeecCCCC
Q 003886 389 LSAKSSVDSGAHSATDSLHRIDWPTNG 415 (789)
Q Consensus 389 ~s~~~~~~~g~~~~~~~L~~~d~~~~~ 415 (789)
... .++++-+|++..+
T Consensus 536 ats-----------~nQv~efdi~~~~ 551 (691)
T KOG2048|consen 536 ATS-----------NNQVFEFDIEARN 551 (691)
T ss_pred Eec-----------CCeEEEEecchhh
Confidence 543 3479999985533
No 360
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=96.85 E-value=0.0058 Score=62.84 Aligned_cols=121 Identities=18% Similarity=0.322 Sum_probs=83.9
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHC---C------cEEEEEcCCCCCCCCchhhcc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV---G------YSLLIVNYRGSLGFGEEALQS 642 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~---G------y~V~~~d~rGs~G~G~~~~~~ 642 (789)
.|..+|-+.+.|+..+..++--.++++||.|++ ..+|...+..|..- | |.||+|-.+| ||=+..
T Consensus 132 eGL~iHFlhvk~p~~k~~k~v~PlLl~HGwPGs--v~EFykfIPlLT~p~~hg~~~d~~FEVI~PSlPG---ygwSd~-- 204 (469)
T KOG2565|consen 132 EGLKIHFLHVKPPQKKKKKKVKPLLLLHGWPGS--VREFYKFIPLLTDPKRHGNESDYAFEVIAPSLPG---YGWSDA-- 204 (469)
T ss_pred cceeEEEEEecCCccccCCcccceEEecCCCch--HHHHHhhhhhhcCccccCCccceeEEEeccCCCC---cccCcC--
Confidence 688899888887654444443345678999986 45565666666543 3 7899999876 654332
Q ss_pred CCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeC
Q 003886 643 LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN 703 (789)
Q Consensus 643 ~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~ 703 (789)
+.+.|.. ...++.+++-|.=+ +.-++..|-|.-+|..++..++..+|+.+.+.-+..
T Consensus 205 -~sk~GFn-~~a~ArvmrkLMlR--Lg~nkffiqGgDwGSiI~snlasLyPenV~GlHlnm 261 (469)
T KOG2565|consen 205 -PSKTGFN-AAATARVMRKLMLR--LGYNKFFIQGGDWGSIIGSNLASLYPENVLGLHLNM 261 (469)
T ss_pred -CccCCcc-HHHHHHHHHHHHHH--hCcceeEeecCchHHHHHHHHHhhcchhhhHhhhcc
Confidence 2233332 45566666666554 456789999999999999999999999888754443
No 361
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=96.83 E-value=0.031 Score=55.82 Aligned_cols=205 Identities=14% Similarity=0.162 Sum_probs=115.5
Q ss_pred CCCceEEEEEeechhhcccceeEEEEEEeecCCCC-cc-ceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEE
Q 003886 106 GNGTQAMFSISQPNLLANKRKKFMLSTVISKENEN-SV-TFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 183 (789)
Q Consensus 106 pdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~-~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 183 (789)
.+-..+.|.....-|.++.+...+.+.+..+...+ +. -++. ...+...+|.|.|.+|+...+.. +..
T Consensus 173 devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd------~~~vrsiSfHPsGefllvgTdHp-----~~r 241 (430)
T KOG0640|consen 173 DEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQD------TEPVRSISFHPSGEFLLVGTDHP-----TLR 241 (430)
T ss_pred CcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhc------cceeeeEeecCCCceEEEecCCC-----cee
Confidence 34456667666555666677778888877443221 11 1221 13478899999999999865543 334
Q ss_pred EecCCceeEEEe-cCC-CccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeC
Q 003886 184 LWSQSQLEKEFH-VPQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE 261 (789)
Q Consensus 184 i~~~~~~~~~~~-~~~-~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (789)
+++-...+-... .+. .+.+.| ..+..|+.|+.-+..+
T Consensus 242 lYdv~T~QcfvsanPd~qht~ai------~~V~Ys~t~~lYvTaS----------------------------------- 280 (430)
T KOG0640|consen 242 LYDVNTYQCFVSANPDDQHTGAI------TQVRYSSTGSLYVTAS----------------------------------- 280 (430)
T ss_pred EEeccceeEeeecCcccccccce------eEEEecCCccEEEEec-----------------------------------
Confidence 442222222221 122 333444 7889999997433322
Q ss_pred CcccccCCccCceEEEEEccCCce-EeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEE
Q 003886 262 DWGETYAGKRQPSLFVININSGEV-QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 340 (789)
Q Consensus 262 d~g~~~~~~~~~~l~v~d~~~g~~-~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~ 340 (789)
.+..|.+||--+++. +.+....+...+-+..|+-+||. |+..+.+ +-++++
T Consensus 281 ---------kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~ky----iLsSG~D---------------S~vkLW 332 (430)
T KOG0640|consen 281 ---------KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKY----ILSSGKD---------------STVKLW 332 (430)
T ss_pred ---------cCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeE----EeecCCc---------------ceeeee
Confidence 236788888655543 33322334456778999999998 8776632 245555
Q ss_pred ecccccchhhhhhhhcCCCCCCCee-ecCCC-----CCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCC
Q 003886 341 RVSLYKSEASELELKESSSEDLPVV-NLTES-----ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (789)
Q Consensus 341 d~~~~~~~~~~~~~~~~~~~~~~~~-~Lt~~-----~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~ 414 (789)
.+ .++... .-|.- ........|...-.+++|.... ...|..||-.++
T Consensus 333 Ei-----------------~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEa----------s~slcsWdaRta 385 (430)
T KOG0640|consen 333 EI-----------------STGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEA----------SNSLCSWDARTA 385 (430)
T ss_pred ee-----------------cCCceEEEEecCCcccchhhhhhhhhcCccceEEccccc----------cCceeeccccch
Confidence 55 233222 11111 1123455666666666665543 346888887776
Q ss_pred CCC
Q 003886 415 GNF 417 (789)
Q Consensus 415 ~~~ 417 (789)
..+
T Consensus 386 dr~ 388 (430)
T KOG0640|consen 386 DRV 388 (430)
T ss_pred hhh
Confidence 554
No 362
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.81 E-value=0.088 Score=57.92 Aligned_cols=92 Identities=14% Similarity=0.179 Sum_probs=55.0
Q ss_pred CCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 003886 105 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 184 (789)
Q Consensus 105 spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i 184 (789)
.|||+.+...- ...+++++. .+|+....|..+. .-+..++||-||+..|..+.+ ....+
T Consensus 21 kPDGsqL~lAA----------g~rlliyD~-ndG~llqtLKgHK-----DtVycVAys~dGkrFASG~aD-----K~VI~ 79 (1081)
T KOG1538|consen 21 KPDGTQLILAA----------GSRLLVYDT-SDGTLLQPLKGHK-----DTVYCVAYAKDGKRFASGSAD-----KSVII 79 (1081)
T ss_pred CCCCceEEEec----------CCEEEEEeC-CCccccccccccc-----ceEEEEEEccCCceeccCCCc-----eeEEE
Confidence 49999887652 235677775 3444344443333 348899999999998753332 35667
Q ss_pred ecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEe
Q 003886 185 WSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 226 (789)
Q Consensus 185 ~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~ 226 (789)
|... .+-++.. .|+.+ +..++|.|-...|+.-+
T Consensus 80 W~~k-lEG~LkY---SH~D~-----IQCMsFNP~~h~LasCs 112 (1081)
T KOG1538|consen 80 WTSK-LEGILKY---SHNDA-----IQCMSFNPITHQLASCS 112 (1081)
T ss_pred eccc-ccceeee---ccCCe-----eeEeecCchHHHhhhcc
Confidence 7432 2222221 12221 27899999998888654
No 363
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=96.80 E-value=0.077 Score=54.95 Aligned_cols=214 Identities=10% Similarity=0.041 Sum_probs=114.1
Q ss_pred cCccccceEEEecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCc--cce-eecCCcceecccEEEEeCCCCCe
Q 003886 91 NISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENS--VTF-QWAPFPVEMTGASAVVPSPSGSK 167 (789)
Q Consensus 91 ~~~~~~~~~~~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~l-t~~~~~~~~~~~~~~~~SPdG~~ 167 (789)
.++-...+|=...-.-+.+.||+.+... ..+.....++...|.-. .++ ..+. +.+....|+|-...
T Consensus 27 dIrVs~~tWDS~fcavNPkfiAvi~eas------gGgaf~ViPl~k~Gr~d~~~P~v~GHt-----~~vLDi~w~PfnD~ 95 (472)
T KOG0303|consen 27 DIRVSRVTWDSSFCAVNPKFVAVIIEAS------GGGAFLVIPLVKTGRMDASYPLVCGHT-----APVLDIDWCPFNDC 95 (472)
T ss_pred ceeeeeeeccccccccCCceEEEEEecC------CCcceeecccccccccCCCCCCccCcc-----ccccccccCccCCc
Confidence 3333333444444445667888776432 22233444443332111 111 1121 45778899998877
Q ss_pred EEEEecCCCCCCeEEEEecCCceeEEE----ecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCC
Q 003886 168 LLVVRNPENESPIQFELWSQSQLEKEF----HVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKG 243 (789)
Q Consensus 168 la~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~ 243 (789)
++- +..++....+|.|..++-.+.++ .+. +..-. ..-+.|.|--.-++.++.
T Consensus 96 vIA-SgSeD~~v~vW~IPe~~l~~~ltepvv~L~-gH~rr------Vg~V~wHPtA~NVLlsag---------------- 151 (472)
T KOG0303|consen 96 VIA-SGSEDTKVMVWQIPENGLTRDLTEPVVELY-GHQRR------VGLVQWHPTAPNVLLSAG---------------- 151 (472)
T ss_pred eee-cCCCCceEEEEECCCcccccCcccceEEEe-eccee------EEEEeecccchhhHhhcc----------------
Confidence 543 22222333455555544333222 121 11111 267888886655554322
Q ss_pred CCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCce
Q 003886 244 GSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETR 323 (789)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~ 323 (789)
.++.+.+||+.+|+...- +.....+.++.|+-||.. |+-++
T Consensus 152 ---------------------------~Dn~v~iWnv~tgeali~--l~hpd~i~S~sfn~dGs~----l~Ttc------ 192 (472)
T KOG0303|consen 152 ---------------------------SDNTVSIWNVGTGEALIT--LDHPDMVYSMSFNRDGSL----LCTTC------ 192 (472)
T ss_pred ---------------------------CCceEEEEeccCCceeee--cCCCCeEEEEEeccCCce----eeeec------
Confidence 458899999999975433 234556789999999998 77665
Q ss_pred eeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeec-CCCCC-ccCcceecCCCCEEEEEecCCCCCCCCcc
Q 003886 324 KLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-TESIS-SAFFPRFSPDGKFLVFLSAKSSVDSGAHS 401 (789)
Q Consensus 324 ~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L-t~~~~-~~~~p~~SpDG~~la~~s~~~~~~~g~~~ 401 (789)
++..|.++|. .++++..- -.+.+ -.....|-.+|+ |+...-.. .
T Consensus 193 ---------kDKkvRv~dp-----------------r~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr-------~ 238 (472)
T KOG0303|consen 193 ---------KDKKVRVIDP-----------------RRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSR-------M 238 (472)
T ss_pred ---------ccceeEEEcC-----------------CCCcEeeecccccCCCcceeEEeccCc-eeeecccc-------c
Confidence 3347888887 34443222 22333 355667888888 43322111 1
Q ss_pred ccceeEEeecC
Q 003886 402 ATDSLHRIDWP 412 (789)
Q Consensus 402 ~~~~L~~~d~~ 412 (789)
...++-+||..
T Consensus 239 seRq~aLwdp~ 249 (472)
T KOG0303|consen 239 SERQIALWDPN 249 (472)
T ss_pred cccceeccCcc
Confidence 23467777643
No 364
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=96.79 E-value=0.0069 Score=70.01 Aligned_cols=104 Identities=18% Similarity=0.187 Sum_probs=65.8
Q ss_pred ceEEEecccccchhhhhhhhcCCCCCCCeeec-CCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCC
Q 003886 336 ALYAVRVSLYKSEASELELKESSSEDLPVVNL-TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (789)
Q Consensus 336 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L-t~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~ 414 (789)
.|.++|. ++...+.+ +.....+.+|+|||||++|+|...-+.+ .+...||+.|+.+.
T Consensus 330 ~L~~~D~-----------------dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~-----~g~s~vYv~~L~t~ 387 (912)
T TIGR02171 330 NLAYIDY-----------------TKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGL-----PGKSSVYVRNLNAS 387 (912)
T ss_pred eEEEEec-----------------CCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCC-----CCCceEEEEehhcc
Confidence 7999998 66677777 6777789999999999999994433211 13457999999886
Q ss_pred CCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCC---------eEEEEEEECCCCc
Q 003886 415 GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS---------SQVIISVNVSSGE 479 (789)
Q Consensus 415 ~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~---------~~~l~~~dl~tg~ 479 (789)
+...+...+.. ..+++....++|.++++..+..+ ...-|.|....|+
T Consensus 388 ~~~~vkl~ve~------------------aaiprwrv~e~gdt~ivyv~~a~nn~d~~~~~~~stw~v~f~~gk 443 (912)
T TIGR02171 388 GSGLVKLPVEN------------------AAIPRWRVLENGDTVIVYVSDASNNKDDATFAAYSTWQVPFANGK 443 (912)
T ss_pred CCCceEeeccc------------------ccccceEecCCCCeEEEEEcCCCCCcchhhhhhcceEEEEecCCC
Confidence 65433222110 12344555677776665544322 1245666665543
No 365
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=0.017 Score=54.62 Aligned_cols=136 Identities=24% Similarity=0.309 Sum_probs=78.5
Q ss_pred hhhccccC-ceeeEeeecccccceeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhH------------
Q 003886 545 VKSLLSSR-QFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS------------ 611 (789)
Q Consensus 545 ~~~~l~~~-~~~~~~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~------------ 611 (789)
+.++|+.. .+....||+... ...+.. +++..+++ ...+..++|+|||.+--. ..+|.
T Consensus 62 VYeLLEk~c~Lkr~~ip~d~~-------e~E~~S-FiF~s~~~-lt~~~kLlVLIHGSGvVr-AGQWARrLIIN~~Ld~G 131 (297)
T KOG3967|consen 62 VYELLEKDCNLKRVSIPVDAT-------ESEPKS-FIFMSEDA-LTNPQKLLVLIHGSGVVR-AGQWARRLIINEDLDSG 131 (297)
T ss_pred HHHHHHhcCCceeEeecCCCC-------CCCCcc-eEEEChhH-hcCccceEEEEecCceEe-cchHhhhhhhccccccC
Confidence 44455433 366667765331 111222 34443322 234556899999965421 12232
Q ss_pred ---HHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHH
Q 003886 612 ---KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHL 688 (789)
Q Consensus 612 ---~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~ 688 (789)
+.+....+.||.|++.|.--...+-+...+ +..+-...++...-+..+++.. ..++.|.++.||+||++++.+
T Consensus 132 TQiPyi~rAv~~Gygviv~N~N~~~kfye~k~n--p~kyirt~veh~~yvw~~~v~p--a~~~sv~vvahsyGG~~t~~l 207 (297)
T KOG3967|consen 132 TQIPYIKRAVAEGYGVIVLNPNRERKFYEKKRN--PQKYIRTPVEHAKYVWKNIVLP--AKAESVFVVAHSYGGSLTLDL 207 (297)
T ss_pred CcChHHHHHHHcCCcEEEeCCchhhhhhhcccC--cchhccchHHHHHHHHHHHhcc--cCcceEEEEEeccCChhHHHH
Confidence 234556789999999996421112222211 1223334456666666666554 457889999999999999999
Q ss_pred HHhCCC
Q 003886 689 IGQAPD 694 (789)
Q Consensus 689 ~~~~p~ 694 (789)
+-++|+
T Consensus 208 ~~~f~~ 213 (297)
T KOG3967|consen 208 VERFPD 213 (297)
T ss_pred HHhcCC
Confidence 999875
No 366
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=96.73 E-value=0.012 Score=65.48 Aligned_cols=134 Identities=19% Similarity=0.160 Sum_probs=79.3
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHH-----------------HHHHHHHCCcEEEEEcCCCCC
Q 003886 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-----------------SLAFLSSVGYSLLIVNYRGSL 633 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~-----------------~~~~la~~Gy~V~~~d~rGs~ 633 (789)
..+..+..|++..++ ..+..|+||++.|||++........ +..-+.+ -..||.+|.+-.+
T Consensus 21 ~~~~~lfyw~~~s~~--~~~~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~~-~an~l~iD~PvGt 97 (415)
T PF00450_consen 21 NENAHLFYWFFESRN--DPEDDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWNK-FANLLFIDQPVGT 97 (415)
T ss_dssp TTTEEEEEEEEE-SS--GGCSS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GGG-TSEEEEE--STTS
T ss_pred CCCcEEEEEEEEeCC--CCCCccEEEEecCCceeccccccccccCceEEeeccccccccccccccc-ccceEEEeecCce
Confidence 356778888887664 4567899999999999643221100 0011222 2689999966447
Q ss_pred CCCchhhccCCCCCC-cccHHHHHHHHHHHHHc-CCCCCccEEEEEcCccHHHHHHHHHh----C------CCceeEEEE
Q 003886 634 GFGEEALQSLPGKVG-SQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQ----A------PDKFVAAAA 701 (789)
Q Consensus 634 G~G~~~~~~~~~~~~-~~~~~D~~~~i~~l~~~-~~~d~~rv~l~G~S~GG~~a~~~~~~----~------p~~~~a~v~ 701 (789)
||+....... ..+. ....+|+..++..+.++ +.....++.|+|-||||..+..+|.. . +-.++++++
T Consensus 98 GfS~~~~~~~-~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~inLkGi~I 176 (415)
T PF00450_consen 98 GFSYGNDPSD-YVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKINLKGIAI 176 (415)
T ss_dssp TT-EESSGGG-GS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSEEEEEEE
T ss_pred EEeecccccc-ccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhcccccccccccccccee
Confidence 7765543221 1111 22356666666655553 55666789999999999987666542 2 235899999
Q ss_pred eCCccch
Q 003886 702 RNPLCNL 708 (789)
Q Consensus 702 ~~pv~~~ 708 (789)
.+|+++.
T Consensus 177 Gng~~dp 183 (415)
T PF00450_consen 177 GNGWIDP 183 (415)
T ss_dssp ESE-SBH
T ss_pred cCccccc
Confidence 9998876
No 367
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.73 E-value=0.011 Score=65.90 Aligned_cols=143 Identities=12% Similarity=0.050 Sum_probs=94.5
Q ss_pred cCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhh
Q 003886 271 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (789)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (789)
++..|..||+...+-.... .....++.++.|+|--.. .++...+. +.|-.+|++.
T Consensus 154 QDg~vK~~DlR~~~S~~t~-~~nSESiRDV~fsp~~~~----~F~s~~ds--------------G~lqlWDlRq------ 208 (839)
T KOG0269|consen 154 QDGTVKCWDLRSKKSKSTF-RSNSESIRDVKFSPGYGN----KFASIHDS--------------GYLQLWDLRQ------ 208 (839)
T ss_pred CCceEEEEeeecccccccc-cccchhhhceeeccCCCc----eEEEecCC--------------ceEEEeeccC------
Confidence 4567888998777655552 123347889999996554 44444322 2466677641
Q ss_pred hhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeee
Q 003886 351 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 430 (789)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~ 430 (789)
-..-..+++.+.+.+.-..|+|++.+||..+.+ ..+.+||+.++....+.. ...+.
T Consensus 209 ---------p~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRD-----------K~vkiWd~t~~~~~~~~t-InTia--- 264 (839)
T KOG0269|consen 209 ---------PDRCEKKLTAHNGPVLCLNWHPNREWLATGGRD-----------KMVKIWDMTDSRAKPKHT-INTIA--- 264 (839)
T ss_pred ---------chhHHHHhhcccCceEEEeecCCCceeeecCCC-----------ccEEEEeccCCCccceeE-Eeecc---
Confidence 223356889999999999999999999876633 258899987755533211 11111
Q ss_pred eccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECC
Q 003886 431 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 476 (789)
Q Consensus 431 ~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~ 476 (789)
.+..+.|-|+-.+.+.+....+...++++|+.
T Consensus 265 --------------pv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr 296 (839)
T KOG0269|consen 265 --------------PVGRVKWRPARSYHLATCSMVVDTSVHVWDVR 296 (839)
T ss_pred --------------eeeeeeeccCccchhhhhhccccceEEEEeec
Confidence 24577899998877777666677778888874
No 368
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.71 E-value=0.0024 Score=58.11 Aligned_cols=59 Identities=19% Similarity=0.234 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhc
Q 003886 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG 713 (789)
Q Consensus 653 ~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~ 713 (789)
+-..+--+|++++. =+.+..+.|.|+||+.++.+..++|++|..+|+.+++++...+++
T Consensus 85 ~rH~AyerYv~eEa--lpgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdardffg 143 (227)
T COG4947 85 ERHRAYERYVIEEA--LPGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDARDFFG 143 (227)
T ss_pred HHHHHHHHHHHHhh--cCCCccccccchhhhhhhhhheeChhHhhhheeecceeeHHHhcc
Confidence 33445566777763 235678899999999999999999999999999999999876543
No 369
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=96.66 E-value=0.2 Score=51.79 Aligned_cols=100 Identities=11% Similarity=0.126 Sum_probs=65.0
Q ss_pred cCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhh
Q 003886 271 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (789)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (789)
.+..|.+||+++|....- .........+..+|..+. |+..+ ...+|.++|....
T Consensus 279 wDHTIk~WDletg~~~~~--~~~~ksl~~i~~~~~~~L----l~~gs---------------sdr~irl~DPR~~----- 332 (423)
T KOG0313|consen 279 WDHTIKVWDLETGGLKST--LTTNKSLNCISYSPLSKL----LASGS---------------SDRHIRLWDPRTG----- 332 (423)
T ss_pred ccceEEEEEeecccceee--eecCcceeEeecccccce----eeecC---------------CCCceeecCCCCC-----
Confidence 347899999998865433 234456678889998876 55544 1236788886321
Q ss_pred hhhhhcCCCCCC-CeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCC
Q 003886 351 ELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (789)
Q Consensus 351 ~~~~~~~~~~~~-~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~ 415 (789)
.+. ...+|..+...+....|||-..+++....- .+.+.+||+.+..
T Consensus 333 ---------~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~----------D~t~klWDvRS~k 379 (423)
T KOG0313|consen 333 ---------DGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSY----------DNTVKLWDVRSTK 379 (423)
T ss_pred ---------CCceeEEeeecchhhhhheecCCCCceEEEEEec----------CCeEEEEEeccCC
Confidence 122 235678888889999999987765433322 2357888886633
No 370
>KOG4328 consensus WD40 protein [Function unknown]
Probab=96.66 E-value=0.24 Score=52.42 Aligned_cols=203 Identities=13% Similarity=0.113 Sum_probs=99.9
Q ss_pred cccEEEEeCCCCC-eEEEEecCCCCCCeEEEEec---CCceeEEEecCCCccccccCCCcccceeecCCCC-EEEEEeec
Q 003886 154 TGASAVVPSPSGS-KLLVVRNPENESPIQFELWS---QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDET-LIAYVAEE 228 (789)
Q Consensus 154 ~~~~~~~~SPdG~-~la~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~-~la~~~~~ 228 (789)
+.+...+|.|.-. .|+-+.+. .|...+|.+.. +.....+.. ...+.| .++.|||-.. +|+..+.+
T Consensus 187 ~Rit~l~fHPt~~~~lva~GdK-~G~VG~Wn~~~~~~d~d~v~~f~---~hs~~V------s~l~F~P~n~s~i~ssSyD 256 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGDK-GGQVGLWNFGTQEKDKDGVYLFT---PHSGPV------SGLKFSPANTSQIYSSSYD 256 (498)
T ss_pred cceEEEEecccCcceEEEEccC-CCcEEEEecCCCCCccCceEEec---cCCccc------cceEecCCChhheeeeccC
Confidence 4588899999987 55444333 35445555531 111111111 111223 8899999654 44445555
Q ss_pred CCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCc--eEeccCCCCCCccceEEEeeCC
Q 003886 229 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE--VQAVKGIPKSLSVGQVVWAPLN 306 (789)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~--~~~l~~~~~~~~~~~~~wSPDg 306 (789)
...+-..+......+.....+...|.....+..+-+..+.+..-..+-+||+.++. ...+ .-..-.+..+++.|--
T Consensus 257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~--~lh~kKI~sv~~NP~~ 334 (498)
T KOG4328|consen 257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENL--RLHKKKITSVALNPVC 334 (498)
T ss_pred ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhh--hhhhcccceeecCCCC
Confidence 54433222211111111111122222222222222222222222345566765543 3333 1222367899999988
Q ss_pred CCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC--eeecCCCCCccCcceecCCCC
Q 003886 307 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP--VVNLTESISSAFFPRFSPDGK 384 (789)
Q Consensus 307 ~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~Lt~~~~~~~~p~~SpDG~ 384 (789)
.+ ++.++. .+..+.++|+... .... ..-...+...+.+..|||+|-
T Consensus 335 p~----~laT~s--------------~D~T~kIWD~R~l--------------~~K~sp~lst~~HrrsV~sAyFSPs~g 382 (498)
T KOG4328|consen 335 PW----FLATAS--------------LDQTAKIWDLRQL--------------RGKASPFLSTLPHRRSVNSAYFSPSGG 382 (498)
T ss_pred ch----heeecc--------------cCcceeeeehhhh--------------cCCCCcceecccccceeeeeEEcCCCC
Confidence 77 444441 1123445565321 1111 233345666788999999998
Q ss_pred EEEEEecCCCCCCCCccccceeEEeec
Q 003886 385 FLVFLSAKSSVDSGAHSATDSLHRIDW 411 (789)
Q Consensus 385 ~la~~s~~~~~~~g~~~~~~~L~~~d~ 411 (789)
.|+..+.+. .|.++|-
T Consensus 383 tl~TT~~D~-----------~IRv~ds 398 (498)
T KOG4328|consen 383 TLLTTCQDN-----------EIRVFDS 398 (498)
T ss_pred ceEeeccCC-----------ceEEeec
Confidence 888777553 5888875
No 371
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=96.65 E-value=0.039 Score=54.17 Aligned_cols=112 Identities=21% Similarity=0.166 Sum_probs=64.9
Q ss_pred CCcEEEEEcCCCCCCCchhhHHHHHHHHHCC-----cEEEEEcCCCCCCC----CchhhccCC------CCCCccc-HHH
Q 003886 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG-----YSLLIVNYRGSLGF----GEEALQSLP------GKVGSQD-VND 654 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G-----y~V~~~d~rGs~G~----G~~~~~~~~------~~~~~~~-~~D 654 (789)
.+|+| |+||..+. ..++......|...+ --++.+|--|+.-. .......+- +.-...+ ..=
T Consensus 45 ~iPTI-fIhGsgG~--asS~~~Mv~ql~~~~~~~~e~Lt~~V~~dgslk~tGk~~Kd~~nP~I~~gfe~n~~s~~~~s~w 121 (288)
T COG4814 45 AIPTI-FIHGSGGT--ASSLNGMVNQLLPDYKAGTESLTMTVDVDGSLKVTGKISKDAKNPIIEFGFEDNTASGLDQSKW 121 (288)
T ss_pred ccceE-EEecCCCC--hhHHHHHHHHhhhcccccccceEEEEcCCCcEEEeeeecccCCCCeEEEEEecCcCchhhHHHH
Confidence 56665 88997664 445555666666554 35666776554211 111110000 0001111 233
Q ss_pred HHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCC-----ceeEEEEeCCccc
Q 003886 655 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAAAARNPLCN 707 (789)
Q Consensus 655 ~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~-----~~~a~v~~~pv~~ 707 (789)
+..++.||.++ .+..++-++|||+||.....++..+.+ .++..|+.++-++
T Consensus 122 lk~~msyL~~~--Y~i~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN 177 (288)
T COG4814 122 LKKAMSYLQKH--YNIPKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFN 177 (288)
T ss_pred HHHHHHHHHHh--cCCceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEeccccc
Confidence 55677888887 466789999999999999888876421 3556666665544
No 372
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=96.64 E-value=0.11 Score=51.78 Aligned_cols=239 Identities=12% Similarity=0.169 Sum_probs=135.1
Q ss_pred CCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecC-CCC-----CC
Q 003886 106 GNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNP-ENE-----SP 179 (789)
Q Consensus 106 pdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~-~~~-----~~ 179 (789)
.|...+.|-....++. ...++-+..++..++... ...|.-..+.+...+=||-.+.|+-.... .++ +.
T Consensus 22 ad~d~icFlvgTnslK---~dNqVhll~~d~e~s~l~---skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~a 95 (370)
T KOG1007|consen 22 ADRDHICFLVGTNSLK---EDNQVHLLRLDSEGSELL---SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGA 95 (370)
T ss_pred cCccceEEEEeccccC---CcceeEEEEecCccchhh---hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeE
Confidence 4556677776665543 335566665655544321 11122222668888889988776554332 222 22
Q ss_pred eEEEEe-cCCc-----eeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCC-CCCCc----
Q 003886 180 IQFELW-SQSQ-----LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKG-GSSDK---- 248 (789)
Q Consensus 180 ~~~~i~-~~~~-----~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~-~~~~~---- 248 (789)
.+|.|. .-+. .+.+..++...+|.+ ..+.|-|++++|+...+.. ...|.....++ ....+
T Consensus 96 aiw~ipe~~~~S~~~tlE~v~~Ldteavg~i------~cvew~Pns~klasm~dn~---i~l~~l~ess~~vaev~ss~s 166 (370)
T KOG1007|consen 96 AIWQIPEPLGQSNSSTLECVASLDTEAVGKI------NCVEWEPNSDKLASMDDNN---IVLWSLDESSKIVAEVLSSES 166 (370)
T ss_pred EEEecccccCccccchhhHhhcCCHHHhCce------eeEEEcCCCCeeEEeccCc---eEEEEcccCcchheeeccccc
Confidence 455555 2222 233334444455655 8999999999999876322 22333222222 11111
Q ss_pred -CCCCCCCcceeeCC-cccccCCccCceEEEEEccCCceE-eccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceee
Q 003886 249 -DCNSWKGQGDWEED-WGETYAGKRQPSLFVININSGEVQ-AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKL 325 (789)
Q Consensus 249 -~~~~~~~~~~~~~d-~g~~~~~~~~~~l~v~d~~~g~~~-~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~ 325 (789)
....-...+.|+|+ -|.++.......|.-||+.+.+.- .+. -.....+.++.|.|+-+. ++.++.+
T Consensus 167 ~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~-dAHgq~vrdlDfNpnkq~----~lvt~gD------ 235 (370)
T KOG1007|consen 167 AEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIE-DAHGQRVRDLDFNPNKQH----ILVTCGD------ 235 (370)
T ss_pred ccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchh-hhhcceeeeccCCCCceE----EEEEcCC------
Confidence 11122235678883 356666667788999998765322 121 011124667889998776 6665522
Q ss_pred eeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCC
Q 003886 326 GIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (789)
Q Consensus 326 g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~ 393 (789)
.+.|.++|.+. ....+..|.++...+...+|.|--.+|+..+..+
T Consensus 236 --------dgyvriWD~R~---------------tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SD 280 (370)
T KOG1007|consen 236 --------DGYVRIWDTRK---------------TKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSD 280 (370)
T ss_pred --------CccEEEEeccC---------------CCccccccCCCceEEEEEEecCccceEEEecCCC
Confidence 23566777631 3445677888888899999999888887766443
No 373
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.63 E-value=0.098 Score=58.85 Aligned_cols=205 Identities=8% Similarity=-0.013 Sum_probs=96.8
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~ 234 (789)
....=++|||+.|.-.++ -...+-.|+ ...+....+.+.... ..+.++|||++++..+.......
T Consensus 195 e~~~PlpnDGk~l~~~~e---y~~~vSvID~etmeV~~qV~Vdgnp----------d~v~~spdGk~afvTsyNsE~G~- 260 (635)
T PRK02888 195 EFRIPLPNDGKDLDDPKK---YRSLFTAVDAETMEVAWQVMVDGNL----------DNVDTDYDGKYAFSTCYNSEEGV- 260 (635)
T ss_pred ccccccCCCCCEeecccc---eeEEEEEEECccceEEEEEEeCCCc----------ccceECCCCCEEEEeccCcccCc-
Confidence 444558899997732211 222333444 333333344444444 67899999998877653221110
Q ss_pred CccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccC-----CceEeccCCCCCCccceEEEeeCCCCC
Q 003886 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS-----GEVQAVKGIPKSLSVGQVVWAPLNEGL 309 (789)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~-----g~~~~l~~~~~~~~~~~~~wSPDg~~~ 309 (789)
........+ ..+.-.-.|+....+.+++...+. ..+.+-++|..+ .++... ++-.-+...+..||||++
T Consensus 261 tl~em~a~e-~d~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~y--IPVGKsPHGV~vSPDGky- 334 (635)
T PRK02888 261 TLAEMMAAE-RDWVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRY--VPVPKNPHGVNTSPDGKY- 334 (635)
T ss_pred ceeeecccc-CceEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEE--EECCCCccceEECCCCCE-
Confidence 000000000 000000111111112222211121 235688999887 344444 455667789999999997
Q ss_pred ccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEE
Q 003886 310 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFL 389 (789)
Q Consensus 310 ~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~ 389 (789)
++..+. . ...+-++|+....+ +....-+.......++.-+. ....-+|.++|+ +|+
T Consensus 335 ---lyVank-l-------------S~tVSVIDv~k~k~----~~~~~~~~~~~vvaevevGl-GPLHTaFDg~G~--ayt 390 (635)
T PRK02888 335 ---FIANGK-L-------------SPTVTVIDVRKLDD----LFDGKIKPRDAVVAEPELGL-GPLHTAFDGRGN--AYT 390 (635)
T ss_pred ---EEEeCC-C-------------CCcEEEEEChhhhh----hhhccCCccceEEEeeccCC-CcceEEECCCCC--EEE
Confidence 555542 1 12577777621100 00000000111112222222 245668888887 555
Q ss_pred ecCCCCCCCCccccceeEEeecCC
Q 003886 390 SAKSSVDSGAHSATDSLHRIDWPT 413 (789)
Q Consensus 390 s~~~~~~~g~~~~~~~L~~~d~~~ 413 (789)
+-- -.+++..||+..
T Consensus 391 slf---------~dsqv~kwn~~~ 405 (635)
T PRK02888 391 TLF---------LDSQIVKWNIEA 405 (635)
T ss_pred eEe---------ecceeEEEehHH
Confidence 532 235799999865
No 374
>COG3150 Predicted esterase [General function prediction only]
Probab=96.61 E-value=0.025 Score=51.80 Aligned_cols=117 Identities=16% Similarity=0.235 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccch-hhhhcCCCCCcchhhhhccCcc
Q 003886 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL-ALMVGTTDIPDWCYVESYGSKG 730 (789)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~-~~~~~~~~~~~~~~~~~~~~~~ 730 (789)
....++-++-++++. .....+|+|-|.|||.+.|++.++ -+++++ .+|..-. ..|.+.-+.+... +..
T Consensus 42 p~~a~~ele~~i~~~--~~~~p~ivGssLGGY~At~l~~~~--Girav~-~NPav~P~e~l~gylg~~en~----ytg-- 110 (191)
T COG3150 42 PQQALKELEKAVQEL--GDESPLIVGSSLGGYYATWLGFLC--GIRAVV-FNPAVRPYELLTGYLGRPENP----YTG-- 110 (191)
T ss_pred HHHHHHHHHHHHHHc--CCCCceEEeecchHHHHHHHHHHh--CChhhh-cCCCcCchhhhhhhcCCCCCC----CCc--
Confidence 344455555555542 223489999999999999999876 356554 4554332 2221111111100 000
Q ss_pred ccccCCCCChhhHHHHHhcCccccCCCCCCC-EEEEEeCC-CCCCChHHHHHHHHHCC
Q 003886 731 KDSFTESPSVEDLTRFHSKSPISHISKVKTP-TIFLLGAQ-DLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P-~Lii~G~~-D~~vp~~~~~~l~~~l~ 786 (789)
+.|.- ......... ...+..++.| .|++.... |.+....++.+.|....
T Consensus 111 -~~y~l--e~~hI~~l~----~~~~~~l~~p~~~~lL~qtgDEvLDyr~a~a~y~~~~ 161 (191)
T COG3150 111 -QEYVL--ESRHIATLC----VLQFRELNRPRCLVLLSQTGDEVLDYRQAVAYYHPCY 161 (191)
T ss_pred -ceEEe--ehhhHHHHH----HhhccccCCCcEEEeecccccHHHHHHHHHHHhhhhh
Confidence 00000 001111111 1234445555 45554444 99999988888887654
No 375
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=96.60 E-value=0.02 Score=64.50 Aligned_cols=93 Identities=13% Similarity=0.131 Sum_probs=65.7
Q ss_pred cCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhh
Q 003886 271 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (789)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (789)
..-.|.++|..+.++.+.. ......+.++.||||||| |+..+. ++.|..+|+
T Consensus 554 ddf~I~vvD~~t~kvvR~f-~gh~nritd~~FS~DgrW----lisasm---------------D~tIr~wDl-------- 605 (910)
T KOG1539|consen 554 DDFSIRVVDVVTRKVVREF-WGHGNRITDMTFSPDGRW----LISASM---------------DSTIRTWDL-------- 605 (910)
T ss_pred CceeEEEEEchhhhhhHHh-hccccceeeeEeCCCCcE----EEEeec---------------CCcEEEEec--------
Confidence 3467999999888765541 223346789999999999 888873 457889998
Q ss_pred hhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEee
Q 003886 351 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID 410 (789)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d 410 (789)
.++...-.-.-...+.+.+|||.|.+||....+. ..||+|-
T Consensus 606 ---------pt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~----------~gIylWs 646 (910)
T KOG1539|consen 606 ---------PTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQ----------NGIYLWS 646 (910)
T ss_pred ---------cCcceeeeEecCCcceeeEECCCCCEEEEEEecC----------ceEEEEE
Confidence 3444332222244578999999999999877543 3588874
No 376
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=96.58 E-value=0.093 Score=53.65 Aligned_cols=200 Identities=14% Similarity=0.140 Sum_probs=118.0
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
+-+..+++-|-.++++..+.+. .+.|| ..|++... +++.+ +...++.+|+---+++...+++..
T Consensus 152 gWVr~vavdP~n~wf~tgs~Dr-----tikIwDlatg~Lklt--ltGhi-------~~vr~vavS~rHpYlFs~gedk~V 217 (460)
T KOG0285|consen 152 GWVRSVAVDPGNEWFATGSADR-----TIKIWDLATGQLKLT--LTGHI-------ETVRGVAVSKRHPYLFSAGEDKQV 217 (460)
T ss_pred ceEEEEeeCCCceeEEecCCCc-----eeEEEEcccCeEEEe--ecchh-------heeeeeeecccCceEEEecCCCee
Confidence 4477888999888887654432 66777 34544322 22221 122789999988887777666543
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCcc
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (789)
+ -|+..+++.....-.+.+-++.....|.-...+++.++..+.|||+.+....... ......+.++.+-|-.-+
T Consensus 218 K--CwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l-~GH~~~V~~V~~~~~dpq--- 291 (460)
T KOG0285|consen 218 K--CWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVL-SGHTNPVASVMCQPTDPQ--- 291 (460)
T ss_pred E--EEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEe-cCCCCcceeEEeecCCCc---
Confidence 2 2333333222222222221111112222233455667889999999887544331 233456778888886666
Q ss_pred EEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEec
Q 003886 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 391 (789)
Q Consensus 312 ~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~ 391 (789)
|+-.+. +..|..+|+. .+.....||.+...+......|+-.. |.|.
T Consensus 292 -vit~S~---------------D~tvrlWDl~----------------agkt~~tlt~hkksvral~lhP~e~~--fASa 337 (460)
T KOG0285|consen 292 -VITGSH---------------DSTVRLWDLR----------------AGKTMITLTHHKKSVRALCLHPKENL--FASA 337 (460)
T ss_pred -eEEecC---------------CceEEEeeec----------------cCceeEeeecccceeeEEecCCchhh--hhcc
Confidence 666552 3367788873 66678899999888888888887554 4442
Q ss_pred CCCCCCCCccccceeEEeecCCCCCC
Q 003886 392 KSSVDSGAHSATDSLHRIDWPTNGNF 417 (789)
Q Consensus 392 ~~~~~~g~~~~~~~L~~~d~~~~~~~ 417 (789)
.. ..+..|+++.|...
T Consensus 338 s~----------dnik~w~~p~g~f~ 353 (460)
T KOG0285|consen 338 SP----------DNIKQWKLPEGEFL 353 (460)
T ss_pred CC----------ccceeccCCccchh
Confidence 22 34777888776543
No 377
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=96.57 E-value=0.4 Score=51.23 Aligned_cols=241 Identities=12% Similarity=0.039 Sum_probs=124.4
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCce--eEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQL--EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~--~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
++..+.|+-... |...+..++ .++.+| ..|+. .+++....+-. ..-....++| ++-++.....
T Consensus 36 g~~s~~w~~~n~-lvvas~~gd---k~~~~~~K~g~~~~Vp~~~k~~gd~-----~~Cv~~~s~S-----~y~~sgG~~~ 101 (673)
T KOG4378|consen 36 GDFSFNWQRRNF-LVVASMAGD---KVMRIKEKDGKTPEVPRVRKLTGDN-----AFCVACASQS-----LYEISGGQSG 101 (673)
T ss_pred cceeeeccccce-EEEeecCCc---eeEEEecccCCCCccceeeccccch-----HHHHhhhhcc-----eeeeccCcCc
Confidence 477888886554 555444432 367777 44442 22222211110 0001233344 3334444334
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCccccc--CCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCC
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY--AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGL 309 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~--~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~ 309 (789)
-+..|+...+-..+..+++.+-+.-..| +|...| ...-..+|.+..+.++.-..-.+.+....+.-+.|||-.+.
T Consensus 102 ~Vkiwdl~~kl~hr~lkdh~stvt~v~Y--N~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~- 178 (673)
T KOG4378|consen 102 CVKIWDLRAKLIHRFLKDHQSTVTYVDY--NNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRF- 178 (673)
T ss_pred eeeehhhHHHHHhhhccCCcceeEEEEe--cCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccce-
Confidence 4455664434344555565543332222 222222 11224567777777764332211333445667889999888
Q ss_pred ccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEE
Q 003886 310 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFL 389 (789)
Q Consensus 310 ~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~ 389 (789)
++..+.. ...+-++|+.+ .......+..+...+....|||-...|+..
T Consensus 179 ---lL~~asd--------------~G~VtlwDv~g---------------~sp~~~~~~~HsAP~~gicfspsne~l~vs 226 (673)
T KOG4378|consen 179 ---LLSIASD--------------KGAVTLWDVQG---------------MSPIFHASEAHSAPCRGICFSPSNEALLVS 226 (673)
T ss_pred ---eeEeecc--------------CCeEEEEeccC---------------CCcccchhhhccCCcCcceecCCccceEEE
Confidence 6665522 23566677621 122233455566778899999987766544
Q ss_pred ecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEE
Q 003886 390 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 469 (789)
Q Consensus 390 s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~ 469 (789)
..- ...|++||..+.... . .++ |...+..++|+++|.+| ..++ .+..
T Consensus 227 VG~----------Dkki~~yD~~s~~s~---~---~l~--------------y~~Plstvaf~~~G~~L-~aG~--s~G~ 273 (673)
T KOG4378|consen 227 VGY----------DKKINIYDIRSQAST---D---RLT--------------YSHPLSTVAFSECGTYL-CAGN--SKGE 273 (673)
T ss_pred ecc----------cceEEEeeccccccc---c---eee--------------ecCCcceeeecCCceEE-Eeec--CCce
Confidence 322 247999997643221 1 111 22235678899999755 3333 3446
Q ss_pred EEEEECCC
Q 003886 470 IISVNVSS 477 (789)
Q Consensus 470 l~~~dl~t 477 (789)
|+.+|+..
T Consensus 274 ~i~YD~R~ 281 (673)
T KOG4378|consen 274 LIAYDMRS 281 (673)
T ss_pred EEEEeccc
Confidence 77778743
No 378
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.52 E-value=0.55 Score=47.02 Aligned_cols=105 Identities=15% Similarity=0.186 Sum_probs=58.7
Q ss_pred EEEeCCCCC-eEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCC
Q 003886 158 AVVPSPSGS-KLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235 (789)
Q Consensus 158 ~~~~SPdG~-~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~ 235 (789)
..+++|.-. .++|.+..+ +..++++ .+.+..++.....+-| .|..-.|||||++ +|..+.+..
T Consensus 72 gi~~~p~~~ravafARrPG---tf~~vfD~~~~~~pv~~~s~~~RH-------fyGHGvfs~dG~~-LYATEndfd---- 136 (366)
T COG3490 72 GIAFHPALPRAVAFARRPG---TFAMVFDPNGAQEPVTLVSQEGRH-------FYGHGVFSPDGRL-LYATENDFD---- 136 (366)
T ss_pred CeecCCCCcceEEEEecCC---ceEEEECCCCCcCcEEEecccCce-------eecccccCCCCcE-EEeecCCCC----
Confidence 456777654 566666654 1123333 3333333333333333 1245679999985 566554321
Q ss_pred ccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCC-CCCccceEEEeeCCCCCccEEE
Q 003886 236 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP-KSLSVGQVVWAPLNEGLHQYLV 314 (789)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~-~~~~~~~~~wSPDg~~~~~~l~ 314 (789)
..+..|-++|...+ ..++-..+ ..+...++.|.+||+. |+
T Consensus 137 ----------------------------------~~rGViGvYd~r~~-fqrvgE~~t~GiGpHev~lm~DGrt----lv 177 (366)
T COG3490 137 ----------------------------------PNRGVIGVYDAREG-FQRVGEFSTHGIGPHEVTLMADGRT----LV 177 (366)
T ss_pred ----------------------------------CCCceEEEEecccc-cceecccccCCcCcceeEEecCCcE----EE
Confidence 14577888887633 33332122 2346679999999997 66
Q ss_pred EE
Q 003886 315 FV 316 (789)
Q Consensus 315 f~ 316 (789)
..
T Consensus 178 va 179 (366)
T COG3490 178 VA 179 (366)
T ss_pred Ee
Confidence 54
No 379
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=0.019 Score=67.03 Aligned_cols=230 Identities=16% Similarity=0.180 Sum_probs=118.2
Q ss_pred CCCcccceeecCCCCE----EEEEeecCCCCCCCccCCC---CCCC---CCCcCCCCCCCcceeeCCcc-cccCCccCce
Q 003886 206 ADGWFEGISWNSDETL----IAYVAEEPSPSKPTFSLGS---TKGG---SSDKDCNSWKGQGDWEEDWG-ETYAGKRQPS 274 (789)
Q Consensus 206 ~d~~~~~~~wSpDg~~----la~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~d~g-~~~~~~~~~~ 274 (789)
.+..|..+.|++-|.. ||=..++... ..|+... .... .....+..-+...+|.+.-+ ...++..+.+
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I--~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~ge 140 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNI--VLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGE 140 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCce--EEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCc
Confidence 3456789999998887 5544444322 1222111 1111 11122222222356666655 3445667889
Q ss_pred EEEEEccCCceEecc-C-CCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhh
Q 003886 275 LFVININSGEVQAVK-G-IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (789)
Q Consensus 275 l~v~d~~~g~~~~l~-~-~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (789)
|++||+..-+. ... + ......+..++|.-.-.+ |+-.+.. .....++|+.
T Consensus 141 I~iWDlnn~~t-P~~~~~~~~~~eI~~lsWNrkvqh----ILAS~s~--------------sg~~~iWDlr--------- 192 (1049)
T KOG0307|consen 141 ILIWDLNKPET-PFTPGSQAPPSEIKCLSWNRKVSH----ILASGSP--------------SGRAVIWDLR--------- 192 (1049)
T ss_pred EEEeccCCcCC-CCCCCCCCCcccceEeccchhhhH----HhhccCC--------------CCCceecccc---------
Confidence 99999976322 120 0 011123445556554444 3333311 1134455662
Q ss_pred hhhcCCCCCCCeeecCCCCC--ccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeee
Q 003886 353 ELKESSSEDLPVVNLTESIS--SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 430 (789)
Q Consensus 353 ~~~~~~~~~~~~~~Lt~~~~--~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~ 430 (789)
....+..|+...+ .+....|.||+.+-+.+...+. ....|-+||+.-...- ..+.
T Consensus 193 -------~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd-------~~PviqlWDlR~assP---------~k~~ 249 (1049)
T KOG0307|consen 193 -------KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDD-------SAPVIQLWDLRFASSP---------LKIL 249 (1049)
T ss_pred -------CCCcccccccCCCccceeeeeeCCCCceeeeeecCCC-------CCceeEeecccccCCc---------hhhh
Confidence 3345556655533 4678999999876555554442 2235777776321110 0000
Q ss_pred eccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC-CceeEEeeecC
Q 003886 431 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES-NFSWSLLTLDG 499 (789)
Q Consensus 431 ~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~-~~~~~~~s~dg 499 (789)
. .+..++..+.|.+.+.++++++..+++ ++.+|.+||++.--.+..+ .+..+.|++..
T Consensus 250 --------~-~H~~GilslsWc~~D~~lllSsgkD~~--ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~ 308 (1049)
T KOG0307|consen 250 --------E-GHQRGILSLSWCPQDPRLLLSSGKDNR--IICWNPNTGEVLGELPAQGNWCFDVQWCPRN 308 (1049)
T ss_pred --------c-ccccceeeeccCCCCchhhhcccCCCC--eeEecCCCceEeeecCCCCcceeeeeecCCC
Confidence 0 123467788999887778777655554 5556888888754333322 23344566543
No 380
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=96.46 E-value=0.057 Score=56.10 Aligned_cols=63 Identities=13% Similarity=0.092 Sum_probs=47.3
Q ss_pred ccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccC
Q 003886 296 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAF 375 (789)
Q Consensus 296 ~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~ 375 (789)
.+...+|+||+.. +++.+. ...++.+|+. .+.....+..+...+.
T Consensus 125 diydL~Ws~d~~~----l~s~s~---------------dns~~l~Dv~----------------~G~l~~~~~dh~~yvq 169 (434)
T KOG1009|consen 125 DIYDLAWSPDSNF----LVSGSV---------------DNSVRLWDVH----------------AGQLLAILDDHEHYVQ 169 (434)
T ss_pred chhhhhccCCCce----eeeeec---------------cceEEEEEec----------------cceeEeeccccccccc
Confidence 4567899999998 888762 3367888872 3344556777788899
Q ss_pred cceecCCCCEEEEEecCC
Q 003886 376 FPRFSPDGKFLVFLSAKS 393 (789)
Q Consensus 376 ~p~~SpDG~~la~~s~~~ 393 (789)
..+|-|-+++++-.+.+.
T Consensus 170 gvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 170 GVAWDPLNQYVASKSSDR 187 (434)
T ss_pred eeecchhhhhhhhhccCc
Confidence 999999999988777553
No 381
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.44 E-value=0.14 Score=51.01 Aligned_cols=119 Identities=15% Similarity=0.205 Sum_probs=71.2
Q ss_pred EEEeCCCCCeEEEEecCCCCCCeEEEEec-CCceeEEEecCC---CccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 158 AVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQ---TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 158 ~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~---~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
.-+|||||++|+-..++-+.+..++-+++ .....++-+.+. +. ..+.|++||+.|+.+-. .-+..
T Consensus 118 HGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGp----------Hev~lm~DGrtlvvanG-GIeth 186 (366)
T COG3490 118 HGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGP----------HEVTLMADGRTLVVANG-GIETH 186 (366)
T ss_pred ccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCc----------ceeEEecCCcEEEEeCC-ceecc
Confidence 45799999998766555555666777773 333444433322 23 47899999998886532 11111
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCC---CCCccceEEEeeCCCCCc
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP---KSLSVGQVVWAPLNEGLH 310 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~---~~~~~~~~~wSPDg~~~~ 310 (789)
|.+.. -+.......+.|.++|..+|++..-...+ ...++..+..-+||.
T Consensus 187 pdfgR-------------------------~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgt--- 238 (366)
T COG3490 187 PDFGR-------------------------TELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGT--- 238 (366)
T ss_pred cccCc-------------------------cccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCc---
Confidence 11110 02222335689999998787653211133 245788899999998
Q ss_pred cEEEEEe
Q 003886 311 QYLVFVG 317 (789)
Q Consensus 311 ~~l~f~~ 317 (789)
|+|..
T Consensus 239 --vwfgc 243 (366)
T COG3490 239 --VWFGC 243 (366)
T ss_pred --EEEEE
Confidence 67765
No 382
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.43 E-value=0.041 Score=53.66 Aligned_cols=208 Identities=12% Similarity=0.077 Sum_probs=119.2
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~ 234 (789)
+...++||++-..++++..++ |+ ..+|+.+....-+..-+.... ++.++.|++-.+++...+.
T Consensus 62 ~LfdV~Wse~~e~~~~~a~GD-GS---Lrl~d~~~~s~Pi~~~kEH~~------EV~Svdwn~~~r~~~ltsS------- 124 (311)
T KOG0277|consen 62 GLFDVAWSENHENQVIAASGD-GS---LRLFDLTMPSKPIHKFKEHKR------EVYSVDWNTVRRRIFLTSS------- 124 (311)
T ss_pred ceeEeeecCCCcceEEEEecC-ce---EEEeccCCCCcchhHHHhhhh------heEEeccccccceeEEeec-------
Confidence 578899999999999887765 44 344433322222221111111 1257788887666655431
Q ss_pred CccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEE
Q 003886 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 314 (789)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~ 314 (789)
-+..|.+|+..-++-.... ......+.+.+|||--.. ++
T Consensus 125 ------------------------------------WD~TiKLW~~~r~~Sv~Tf-~gh~~~Iy~a~~sp~~~n----lf 163 (311)
T KOG0277|consen 125 ------------------------------------WDGTIKLWDPNRPNSVQTF-NGHNSCIYQAAFSPHIPN----LF 163 (311)
T ss_pred ------------------------------------cCCceEeecCCCCcceEee-cCCccEEEEEecCCCCCC----eE
Confidence 1245667776554432221 223346778999997665 43
Q ss_pred EEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCC
Q 003886 315 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSS 394 (789)
Q Consensus 315 f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~ 394 (789)
-.+ + .++.+-.+|++ ..++...+..+...+..-.||.-...++.....+
T Consensus 164 as~-S-------------gd~~l~lwdvr----------------~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd- 212 (311)
T KOG0277|consen 164 ASA-S-------------GDGTLRLWDVR----------------SPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVD- 212 (311)
T ss_pred EEc-c-------------CCceEEEEEec----------------CCCceeEEEeccceeEeecccccCCcEEEecCCC-
Confidence 332 1 22344444542 2344444555666677788998777777766443
Q ss_pred CCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEE
Q 003886 395 VDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 474 (789)
Q Consensus 395 ~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~d 474 (789)
+.|+.||+..=.. ++ ..+ .| ....+..+.|||-...|+.+++.+....||...
T Consensus 213 ---------~~vr~wDir~~r~-pl----~eL------------~g-h~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~ 265 (311)
T KOG0277|consen 213 ---------NLVRGWDIRNLRT-PL----FEL------------NG-HGLAVRKVKFSPHHASLLASASYDMTVRIWDPE 265 (311)
T ss_pred ---------ceEEEEehhhccc-cc----eee------------cC-CceEEEEEecCcchhhHhhhccccceEEecccc
Confidence 3588898854221 11 000 00 111345678999888898888888888888765
Q ss_pred CCCC
Q 003886 475 VSSG 478 (789)
Q Consensus 475 l~tg 478 (789)
...+
T Consensus 266 ~~ds 269 (311)
T KOG0277|consen 266 RQDS 269 (311)
T ss_pred cchh
Confidence 4333
No 383
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=96.41 E-value=0.034 Score=55.05 Aligned_cols=101 Identities=16% Similarity=0.143 Sum_probs=63.3
Q ss_pred EEEEecCCCCCCCCCcEEEEEcCCCCCCCch--hhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHH
Q 003886 578 AIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS--SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDV 655 (789)
Q Consensus 578 ~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~--~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~ 655 (789)
.|+..|+ ++. .||.+-||..-...+ .|....+.|+++||.|++.-|.-+--|... ...-....
T Consensus 8 ~wvl~P~-----~P~-gvihFiGGaf~ga~P~itYr~lLe~La~~Gy~ViAtPy~~tfDH~~~---------A~~~~~~f 72 (250)
T PF07082_consen 8 SWVLIPP-----RPK-GVIHFIGGAFVGAAPQITYRYLLERLADRGYAVIATPYVVTFDHQAI---------AREVWERF 72 (250)
T ss_pred cEEEeCC-----CCC-EEEEEcCcceeccCcHHHHHHHHHHHHhCCcEEEEEecCCCCcHHHH---------HHHHHHHH
Confidence 5677775 233 455555655433333 677888999999999999998631111111 11113455
Q ss_pred HHHHHHHHHcCCCCC--ccEEEEEcCccHHHHHHHHHhCC
Q 003886 656 LTAIDHVIDMGLANP--SKVTVVGGSHGGFLTTHLIGQAP 693 (789)
Q Consensus 656 ~~~i~~l~~~~~~d~--~rv~l~G~S~GG~~a~~~~~~~p 693 (789)
..+++.+.+++..+. -.+.=+|||+|+-+-+.+...++
T Consensus 73 ~~~~~~L~~~~~~~~~~lP~~~vGHSlGcklhlLi~s~~~ 112 (250)
T PF07082_consen 73 ERCLRALQKRGGLDPAYLPVYGVGHSLGCKLHLLIGSLFD 112 (250)
T ss_pred HHHHHHHHHhcCCCcccCCeeeeecccchHHHHHHhhhcc
Confidence 566777776644443 35777999999999888876654
No 384
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.41 E-value=0.14 Score=51.64 Aligned_cols=165 Identities=21% Similarity=0.303 Sum_probs=87.3
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
..++..+|.||.++|+.+.+.. ..++.+...|+..+.+.+.+ . + ...++.+.-+++ ++.+.+
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~---~~i~els~~G~vlr~i~l~g-~-~------D~EgI~y~g~~~-~vl~~E------ 83 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEP---GEIYELSLDGKVLRRIPLDG-F-G------DYEGITYLGNGR-YVLSEE------ 83 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTT---TEEEEEETT--EEEEEE-SS---S------SEEEEEE-STTE-EEEEET------
T ss_pred CCccccEEcCCCCeEEEEECCC---CEEEEEcCCCCEEEEEeCCC-C-C------CceeEEEECCCE-EEEEEc------
Confidence 3478899999999998887653 56888887777777777643 1 1 227888887774 333333
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccC--Cc-----eEecc-CCC--CCCccceEEEe
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS--GE-----VQAVK-GIP--KSLSVGQVVWA 303 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~--g~-----~~~l~-~~~--~~~~~~~~~wS 303 (789)
+...|+++++.. .. .+.+. +.+ .+..+..++|.
T Consensus 84 -------------------------------------r~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D 126 (248)
T PF06977_consen 84 -------------------------------------RDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYD 126 (248)
T ss_dssp -------------------------------------TTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEE
T ss_pred -------------------------------------CCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEc
Confidence 235677776632 21 12221 223 34567899999
Q ss_pred eCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCee---ecC---CCCCccCcc
Q 003886 304 PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV---NLT---ESISSAFFP 377 (789)
Q Consensus 304 PDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~Lt---~~~~~~~~p 377 (789)
|.++. ++.+. +.. +..||.++.... . ...... .+. .........
T Consensus 127 ~~~~~----L~v~k-E~~------------P~~l~~~~~~~~---~----------~~~~~~~~~~~~~~~~~~~d~S~l 176 (248)
T PF06977_consen 127 PKTNR----LFVAK-ERK------------PKRLYEVNGFPG---G----------FDLFVSDDQDLDDDKLFVRDLSGL 176 (248)
T ss_dssp TTTTE----EEEEE-ESS------------SEEEEEEESTT----S----------S--EEEE-HHHH-HT--SS---EE
T ss_pred CCCCE----EEEEe-CCC------------ChhhEEEccccC---c----------cceeeccccccccccceeccccce
Confidence 99987 66554 322 234666653100 0 000000 000 111235667
Q ss_pred eecCCCCEEEEEecCCCCCCCCccccceeEEeecCC
Q 003886 378 RFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (789)
Q Consensus 378 ~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~ 413 (789)
.+.|....|+.+|..+ ..|..+|..+
T Consensus 177 ~~~p~t~~lliLS~es----------~~l~~~d~~G 202 (248)
T PF06977_consen 177 SYDPRTGHLLILSDES----------RLLLELDRQG 202 (248)
T ss_dssp EEETTTTEEEEEETTT----------TEEEEE-TT-
T ss_pred EEcCCCCeEEEEECCC----------CeEEEECCCC
Confidence 7888888888888765 3588888543
No 385
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=96.36 E-value=0.41 Score=45.80 Aligned_cols=104 Identities=13% Similarity=0.135 Sum_probs=65.2
Q ss_pred CccCceEEEEEccCCce-EeccCCC-----CCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEec
Q 003886 269 GKRQPSLFVININSGEV-QAVKGIP-----KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 342 (789)
Q Consensus 269 ~~~~~~l~v~d~~~g~~-~~l~~~~-----~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~ 342 (789)
+.++..|..||+.-... ..+.... ....+..++-.|.|+. |+ .+. .++.-.++|+
T Consensus 200 gsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrl----l~-sg~--------------~dssc~lydi 260 (350)
T KOG0641|consen 200 GSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRL----LA-SGH--------------ADSSCMLYDI 260 (350)
T ss_pred cCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcce----ee-ecc--------------CCCceEEEEe
Confidence 44567788888765433 3332111 1124567888999985 44 442 1224556666
Q ss_pred ccccchhhhhhhhcCCCCCC-CeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCc
Q 003886 343 SLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS 419 (789)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~-~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~ 419 (789)
.++ .+++...+...+...+|||...+++..+-+ ..|.+-|++++-..++
T Consensus 261 -----------------rg~r~iq~f~phsadir~vrfsp~a~yllt~syd-----------~~ikltdlqgdla~el 310 (350)
T KOG0641|consen 261 -----------------RGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYD-----------MKIKLTDLQGDLAHEL 310 (350)
T ss_pred -----------------eCCceeeeeCCCccceeEEEeCCCceEEEEeccc-----------ceEEEeecccchhhcC
Confidence 344 455666777789999999998888776644 3588888887544433
No 386
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=96.35 E-value=0.014 Score=63.63 Aligned_cols=153 Identities=17% Similarity=0.155 Sum_probs=90.4
Q ss_pred CCCCcEEEEEcCCCCCCCchhhHHH-HHHHHHCC--cEEEEEcCCC-CCCCCchhhccCCCCCCcccHHHHHHHHHHHHH
Q 003886 589 CSCDPLIVVLHGGPHSVSLSSYSKS-LAFLSSVG--YSLLIVNYRG-SLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID 664 (789)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~-~~~la~~G--y~V~~~d~rG-s~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 664 (789)
-...|+++++||+|.......|.+. .+.|.-.| ..|..+|++- .+|-+ -....+-+..+.++.+.
T Consensus 173 v~~spl~i~aps~p~ap~tSd~~~~wqs~lsl~gevvev~tfdl~n~igG~n-----------I~h~ae~~vSf~r~kvl 241 (784)
T KOG3253|consen 173 VPASPLAIKAPSTPLAPKTSDRMWSWQSRLSLKGEVVEVPTFDLNNPIGGAN-----------IKHAAEYSVSFDRYKVL 241 (784)
T ss_pred ccCCceEEeccCCCCCCccchHHHhHHHHHhhhceeeeeccccccCCCCCcc-----------hHHHHHHHHHHhhhhhh
Confidence 3457999999999833333344433 33444444 4566777762 22210 01113334444454333
Q ss_pred --cCCCCCccEEEEEcCccHHHHHHHHHhCCC-ceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCChh
Q 003886 665 --MGLANPSKVTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVE 741 (789)
Q Consensus 665 --~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~-~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (789)
.+......|.|+|+|+|+.++.+......| .+.|+|+..=.++ .-+ +. + +.+
T Consensus 242 ei~gefpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~------~vd----------gp---r---gir--- 296 (784)
T KOG3253|consen 242 EITGEFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLD------TVD----------GP---R---GIR--- 296 (784)
T ss_pred hhhccCCCCceEEEecccCceeeEEeccccCCceEEEEEEeccccc------CCC----------cc---c---CCc---
Confidence 355778899999999998888777665443 3566665421111 000 00 0 011
Q ss_pred hHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 742 DLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 742 ~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
-+.+-.++.|+|++.|.+|.+|++..-+++.+..+.
T Consensus 297 ----------DE~Lldmk~PVLFV~Gsnd~mcspn~ME~vreKMqA 332 (784)
T KOG3253|consen 297 ----------DEALLDMKQPVLFVIGSNDHMCSPNSMEEVREKMQA 332 (784)
T ss_pred ----------chhhHhcCCceEEEecCCcccCCHHHHHHHHHHhhc
Confidence 123456789999999999999999999888887653
No 387
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.34 E-value=0.17 Score=53.49 Aligned_cols=71 Identities=13% Similarity=0.051 Sum_probs=43.9
Q ss_pred cceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCC
Q 003886 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG 283 (789)
Q Consensus 211 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g 283 (789)
-.++.||||++||+...+... ..|+..+....+.++.+..-+....|...-.+.|+...+..+-+|+++.-
T Consensus 206 l~~avS~Dgkylatgg~d~~v--~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~ 276 (479)
T KOG0299|consen 206 LTLAVSSDGKYLATGGRDRHV--QIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL 276 (479)
T ss_pred EEEEEcCCCcEEEecCCCceE--EEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh
Confidence 478899999999997655432 24444444444445555544444455554456666666777777777643
No 388
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.33 E-value=0.038 Score=56.70 Aligned_cols=124 Identities=15% Similarity=0.107 Sum_probs=76.0
Q ss_pred HHHHHhhcCccccceEEEecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCcc-ceeecCCcceecccEEEEeC
Q 003886 84 KLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSV-TFQWAPFPVEMTGASAVVPS 162 (789)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~lt~~~~~~~~~~~~~~~~S 162 (789)
+++..+...|.-.++..--+.++++.++||..++ ..+++.++++..- +++ .+..+. +.+.+.+||
T Consensus 117 klLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~-------t~GdV~l~d~~nl--~~v~~I~aH~-----~~lAalafs 182 (391)
T KOG2110|consen 117 KLLHTIETTPPNPKGLCALSPNNANCYLAYPGST-------TSGDVVLFDTINL--QPVNTINAHK-----GPLAALAFS 182 (391)
T ss_pred eeehhhhccCCCccceEeeccCCCCceEEecCCC-------CCceEEEEEcccc--eeeeEEEecC-----CceeEEEEC
Confidence 4666666665545544444556778899997543 2456777765221 111 122222 458889999
Q ss_pred CCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCC
Q 003886 163 PSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (789)
Q Consensus 163 PdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~ 230 (789)
|||..||..++.+ .++++....+..++.++..+.. --.+..++||||++.|+.+++.++
T Consensus 183 ~~G~llATASeKG----TVIRVf~v~~G~kl~eFRRG~~-----~~~IySL~Fs~ds~~L~~sS~TeT 241 (391)
T KOG2110|consen 183 PDGTLLATASEKG----TVIRVFSVPEGQKLYEFRRGTY-----PVSIYSLSFSPDSQFLAASSNTET 241 (391)
T ss_pred CCCCEEEEeccCc----eEEEEEEcCCccEeeeeeCCce-----eeEEEEEEECCCCCeEEEecCCCe
Confidence 9999999988765 5676663333344444322221 012368999999999988776543
No 389
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.32 E-value=0.043 Score=61.44 Aligned_cols=169 Identities=14% Similarity=0.156 Sum_probs=93.0
Q ss_pred cccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCcc
Q 003886 122 ANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVH 201 (789)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 201 (789)
++.....+..+++..+.+........ ..+..++|||.-... |++..++| +..+|+--+..+-..--....
T Consensus 151 SGSQDg~vK~~DlR~~~S~~t~~~nS------ESiRDV~fsp~~~~~-F~s~~dsG---~lqlWDlRqp~r~~~k~~AH~ 220 (839)
T KOG0269|consen 151 SGSQDGTVKCWDLRSKKSKSTFRSNS------ESIRDVKFSPGYGNK-FASIHDSG---YLQLWDLRQPDRCEKKLTAHN 220 (839)
T ss_pred ecCCCceEEEEeeecccccccccccc------hhhhceeeccCCCce-EEEecCCc---eEEEeeccCchhHHHHhhccc
Confidence 44566777788875544322211111 347789999965443 33333334 455553222221111111233
Q ss_pred ccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEcc
Q 003886 202 GSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 281 (789)
Q Consensus 202 g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~ 281 (789)
|.| ..+.|+|++.+||... ++..+.+||..
T Consensus 221 GpV------~c~nwhPnr~~lATGG--------------------------------------------RDK~vkiWd~t 250 (839)
T KOG0269|consen 221 GPV------LCLNWHPNREWLATGG--------------------------------------------RDKMVKIWDMT 250 (839)
T ss_pred Cce------EEEeecCCCceeeecC--------------------------------------------CCccEEEEecc
Confidence 444 7899999999999753 33568888887
Q ss_pred CCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCC
Q 003886 282 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED 361 (789)
Q Consensus 282 ~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 361 (789)
+++...+-.+..-..++.+.|-|+-..- |+-.+... ...|+++|+.. .-
T Consensus 251 ~~~~~~~~tInTiapv~rVkWRP~~~~h---LAtcsmv~-------------dtsV~VWDvrR---------------PY 299 (839)
T KOG0269|consen 251 DSRAKPKHTINTIAPVGRVKWRPARSYH---LATCSMVV-------------DTSVHVWDVRR---------------PY 299 (839)
T ss_pred CCCccceeEEeecceeeeeeeccCccch---hhhhhccc-------------cceEEEEeecc---------------cc
Confidence 7655433113334567899999987751 44444222 23688888731 11
Q ss_pred CCeeecCCCCCccCcceecC
Q 003886 362 LPVVNLTESISSAFFPRFSP 381 (789)
Q Consensus 362 ~~~~~Lt~~~~~~~~p~~Sp 381 (789)
-....+..+........|-.
T Consensus 300 IP~~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 300 IPYATFLEHTDSVTGIAWDS 319 (839)
T ss_pred ccceeeeccCccccceeccC
Confidence 23344555555566666643
No 390
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.29 E-value=0.76 Score=46.13 Aligned_cols=56 Identities=23% Similarity=0.455 Sum_probs=37.7
Q ss_pred EEEeCCCCCeEEEEecCCCCCCeEEEEe--cC--CceeEEEecCCCccccccCCCcccceeecCCCCEEEEE
Q 003886 158 AVVPSPSGSKLLVVRNPENESPIQFELW--SQ--SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 225 (789)
Q Consensus 158 ~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~--~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~ 225 (789)
..+.+.||+.||.+.+. .++|. .+ +.......++.+.+ -+...+.||||+..|||+
T Consensus 2 ~~~~~~~Gk~lAi~qd~------~iEiRsa~Ddf~si~~kcqVpkD~~------PQWRkl~WSpD~tlLa~a 61 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQ------CIEIRSAKDDFSSIIGKCQVPKDPN------PQWRKLAWSPDCTLLAYA 61 (282)
T ss_pred ceeecCCCcEEEEEecc------EEEEEeccCCchheeEEEecCCCCC------chheEEEECCCCcEEEEE
Confidence 35788999999998764 46666 22 23334445554442 123579999999999997
No 391
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=96.24 E-value=0.33 Score=48.42 Aligned_cols=148 Identities=15% Similarity=0.095 Sum_probs=84.2
Q ss_pred ccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeec-CC----
Q 003886 296 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNL-TE---- 369 (789)
Q Consensus 296 ~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~L-t~---- 369 (789)
.+.-+.|-|++++ |+.+.. .+|..+++. ++.+ ...| ..
T Consensus 125 ~i~cvew~Pns~k----lasm~d----------------n~i~l~~l~----------------ess~~vaev~ss~s~e 168 (370)
T KOG1007|consen 125 KINCVEWEPNSDK----LASMDD----------------NNIVLWSLD----------------ESSKIVAEVLSSESAE 168 (370)
T ss_pred ceeeEEEcCCCCe----eEEecc----------------CceEEEEcc----------------cCcchheeeccccccc
Confidence 4567899999999 887761 256677763 2222 1111 11
Q ss_pred CCCccCcceecC--CCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCC
Q 003886 370 SISSAFFPRFSP--DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSIL 447 (789)
Q Consensus 370 ~~~~~~~p~~Sp--DG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~ 447 (789)
+....++-+||| ||++++.++.. .|+.||+.+.....-.... ....+.
T Consensus 169 ~~~~ftsg~WspHHdgnqv~tt~d~------------tl~~~D~RT~~~~~sI~dA------------------Hgq~vr 218 (370)
T KOG1007|consen 169 MRHSFTSGAWSPHHDGNQVATTSDS------------TLQFWDLRTMKKNNSIEDA------------------HGQRVR 218 (370)
T ss_pred ccceecccccCCCCccceEEEeCCC------------cEEEEEccchhhhcchhhh------------------hcceee
Confidence 123466779998 99998877644 4899998875442111111 111234
Q ss_pred CCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCC
Q 003886 448 SNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSP 509 (789)
Q Consensus 448 ~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~ 509 (789)
.+.|.|+-..++++..+++..+||-....+-.++.+.........+-|.+..+.|+.+.++.
T Consensus 219 dlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SD 280 (370)
T KOG1007|consen 219 DLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSD 280 (370)
T ss_pred eccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCC
Confidence 56788888888888888888888865433333333322221111124455555555554433
No 392
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=0.17 Score=49.50 Aligned_cols=178 Identities=13% Similarity=0.176 Sum_probs=104.6
Q ss_pred cCceEEEEEccC-CceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchh
Q 003886 271 RQPSLFVININS-GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 349 (789)
Q Consensus 271 ~~~~l~v~d~~~-g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 349 (789)
+...|+++++.. +.++.+....-......++||+.-.. +++++- .+..|.++|+..
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~----~~~~a~--------------GDGSLrl~d~~~----- 92 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHEN----QVIAAS--------------GDGSLRLFDLTM----- 92 (311)
T ss_pred cCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcc----eEEEEe--------------cCceEEEeccCC-----
Confidence 568899999963 33333321222346679999999888 777763 233566666521
Q ss_pred hhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEee
Q 003886 350 SELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 429 (789)
Q Consensus 350 ~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~ 429 (789)
..+.++.+.++...+.+..|++--++.+.++.=+ ..|.+|+..-.+..+.
T Consensus 93 ----------~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD----------~TiKLW~~~r~~Sv~T---------- 142 (311)
T KOG0277|consen 93 ----------PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWD----------GTIKLWDPNRPNSVQT---------- 142 (311)
T ss_pred ----------CCcchhHHHhhhhheEEeccccccceeEEeeccC----------CceEeecCCCCcceEe----------
Confidence 3455666777777888899998766665555211 2366666433222111
Q ss_pred eeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCC
Q 003886 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSP 509 (789)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~ 509 (789)
|.| ...-+....|+|.-.-++.+.+.++..+||-++.. |+..-|......+---.|+.-...++++....
T Consensus 143 --------f~g-h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~-gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd 212 (311)
T KOG0277|consen 143 --------FNG-HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP-GKFMSIEAHNSEILCCDWSKYNHNVLATGGVD 212 (311)
T ss_pred --------ecC-CccEEEEEecCCCCCCeEEEccCCceEEEEEecCC-CceeEEEeccceeEeecccccCCcEEEecCCC
Confidence 111 01123466899877778888888889999988876 44433443332222223444445566666555
Q ss_pred CC
Q 003886 510 VD 511 (789)
Q Consensus 510 ~~ 511 (789)
..
T Consensus 213 ~~ 214 (311)
T KOG0277|consen 213 NL 214 (311)
T ss_pred ce
Confidence 43
No 393
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=96.17 E-value=0.068 Score=56.52 Aligned_cols=214 Identities=14% Similarity=0.102 Sum_probs=114.3
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEec-CCCccccccCCCcccceeecCCCCEEEEEeecCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~-~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~ 230 (789)
+-+.+.+-+|+|.+|+-....+ ++ .+| ..|....+..- -+.+ ..+.||-||..|...+.+..
T Consensus 82 g~v~al~s~n~G~~l~ag~i~g----~l-YlWelssG~LL~v~~aHYQ~I----------TcL~fs~dgs~iiTgskDg~ 146 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLAGTISG----NL-YLWELSSGILLNVLSAHYQSI----------TCLKFSDDGSHIITGSKDGA 146 (476)
T ss_pred cceeeeecCCCceEEEeecccC----cE-EEEEeccccHHHHHHhhccce----------eEEEEeCCCcEEEecCCCcc
Confidence 5588899999999886432221 23 355 45655443321 1222 67888888888877666654
Q ss_pred CCCCCccC---C----CCCCCCCCcCCCCCCCcce--eeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEE
Q 003886 231 PSKPTFSL---G----STKGGSSDKDCNSWKGQGD--WEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVV 301 (789)
Q Consensus 231 ~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~--~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~ 301 (789)
.-.+.... . ..+....+.++..-+.+.. +.+--+..|+...+..+.+||+..|.+..- +.-+.....++
T Consensus 147 V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlt--i~fp~si~av~ 224 (476)
T KOG0646|consen 147 VLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLT--ITFPSSIKAVA 224 (476)
T ss_pred EEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEE--EecCCcceeEE
Confidence 33211110 0 0111122222222111110 000002334445678899999999965432 34455677889
Q ss_pred EeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcC-CCCCCCeeecCCCCC--ccCcce
Q 003886 302 WAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKES-SSEDLPVVNLTESIS--SAFFPR 378 (789)
Q Consensus 302 wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~Lt~~~~--~~~~p~ 378 (789)
.+|-++ .+|++.+.+ .||..++-..+...... +... .....+...+..+.+ .++..+
T Consensus 225 lDpae~-----~~yiGt~~G--------------~I~~~~~~~~~~~~~~v-~~k~~~~~~t~~~~~~Gh~~~~~ITcLa 284 (476)
T KOG0646|consen 225 LDPAER-----VVYIGTEEG--------------KIFQNLLFKLSGQSAGV-NQKGRHEENTQINVLVGHENESAITCLA 284 (476)
T ss_pred Eccccc-----EEEecCCcc--------------eEEeeehhcCCcccccc-cccccccccceeeeeccccCCcceeEEE
Confidence 999877 577774433 46666552111000000 0000 012334455666655 688899
Q ss_pred ecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCC
Q 003886 379 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (789)
Q Consensus 379 ~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~ 415 (789)
+|-||..|+.-+.+ ..+.+||..+.+
T Consensus 285 is~DgtlLlSGd~d-----------g~VcvWdi~S~Q 310 (476)
T KOG0646|consen 285 ISTDGTLLLSGDED-----------GKVCVWDIYSKQ 310 (476)
T ss_pred EecCccEEEeeCCC-----------CCEEEEecchHH
Confidence 99999977654433 258899987644
No 394
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.17 E-value=0.23 Score=56.82 Aligned_cols=260 Identities=13% Similarity=0.131 Sum_probs=140.9
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
.++-..+|.|.--+|+..--. ..+.+|+ -+.....++ ...|+| .++.|.|++-. |++..+..
T Consensus 10 sRvKglsFHP~rPwILtslHs-----G~IQlWDYRM~tli~rFd---eHdGpV------Rgv~FH~~qpl--FVSGGDDy 73 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSLHS-----GVIQLWDYRMGTLIDRFD---EHDGPV------RGVDFHPTQPL--FVSGGDDY 73 (1202)
T ss_pred ccccceecCCCCCEEEEeecC-----ceeeeehhhhhhHHhhhh---ccCCcc------ceeeecCCCCe--EEecCCcc
Confidence 346677899998888865433 3677773 333332222 223344 89999999874 44443333
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCcc
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (789)
....|+...+...-....+..|+....|....--.++...+..|.+|+-.+++...+. +...-.+--..|.|....
T Consensus 74 kIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavl-tGHnHYVMcAqFhptEDl--- 149 (1202)
T KOG0292|consen 74 KIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVL-TGHNHYVMCAQFHPTEDL--- 149 (1202)
T ss_pred EEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEE-ecCceEEEeeccCCccce---
Confidence 4446665555555666677777776666544333344556788999999998876652 333345667789997776
Q ss_pred EEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhh--hhc-------CCCC---CCCe-eecCCCCCccCcce
Q 003886 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELE--LKE-------SSSE---DLPV-VNLTESISSAFFPR 378 (789)
Q Consensus 312 ~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~--~~~-------~~~~---~~~~-~~Lt~~~~~~~~p~ 378 (789)
|+..+- +..|.++|+.+..++.-.+- .++ ...- ...+ ..|.++...+...+
T Consensus 150 -IVSaSL---------------DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaA 213 (1202)
T KOG0292|consen 150 -IVSASL---------------DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAA 213 (1202)
T ss_pred -EEEecc---------------cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEE
Confidence 666652 23566677643222110000 000 0000 0111 23445566677778
Q ss_pred ecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEE
Q 003886 379 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTM 458 (789)
Q Consensus 379 ~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l 458 (789)
|.|-=-.|+..+.+ ..-.||+|+-.. . +++ +. | .| +..++..+-|.|... +
T Consensus 214 fhpTlpliVSG~DD---------RqVKlWrmnetK-a--------WEv-Dt-------c-rg-H~nnVssvlfhp~q~-l 264 (1202)
T KOG0292|consen 214 FHPTLPLIVSGADD---------RQVKLWRMNETK-A--------WEV-DT-------C-RG-HYNNVSSVLFHPHQD-L 264 (1202)
T ss_pred ecCCcceEEecCCc---------ceeeEEEecccc-c--------eee-hh-------h-hc-ccCCcceEEecCccc-e
Confidence 88764433322222 123466665221 1 111 00 0 01 112456677888655 6
Q ss_pred EEEEEeCCeEEEEEEECCCC
Q 003886 459 LLSSIWGSSQVIISVNVSSG 478 (789)
Q Consensus 459 ~~~~~~~~~~~l~~~dl~tg 478 (789)
+++...+...++|-++-.|+
T Consensus 265 IlSnsEDksirVwDm~kRt~ 284 (1202)
T KOG0292|consen 265 ILSNSEDKSIRVWDMTKRTS 284 (1202)
T ss_pred eEecCCCccEEEEecccccc
Confidence 66766666677776654443
No 395
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=96.16 E-value=0.042 Score=60.55 Aligned_cols=132 Identities=19% Similarity=0.284 Sum_probs=80.1
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchh-hHHH--H------------------HHHHHCCcEEEEEcCC
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-YSKS--L------------------AFLSSVGYSLLIVNYR 630 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~-~~~~--~------------------~~la~~Gy~V~~~d~r 630 (789)
.+..+.-|++...+ .....|+|+++-|||++..... |... + .-+. +-..++.+|.+
T Consensus 48 ~~~~lfy~f~es~~--~~~~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~-~~anllfiDqP 124 (433)
T PLN03016 48 ENVQFFYYFIKSEN--NPKEDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWT-KMANIIFLDQP 124 (433)
T ss_pred CCeEEEEEEEecCC--CcccCCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeCCCchh-hcCcEEEecCC
Confidence 45668888887653 3457899999999999643211 1100 0 0111 22678999976
Q ss_pred CCCCCCchhhccCCCCCCc-ccHHHHHHHHHHHHH-cCCCCCccEEEEEcCccHHHHHHHHHh----C------CCceeE
Q 003886 631 GSLGFGEEALQSLPGKVGS-QDVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQ----A------PDKFVA 698 (789)
Q Consensus 631 Gs~G~G~~~~~~~~~~~~~-~~~~D~~~~i~~l~~-~~~~d~~rv~l~G~S~GG~~a~~~~~~----~------p~~~~a 698 (789)
-+.||...... ...... .+++|+..++....+ .+..-..++.|+|.||||..+..+|.. . +-.+|+
T Consensus 125 vGtGfSy~~~~--~~~~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~~~inLkG 202 (433)
T PLN03016 125 VGSGFSYSKTP--IDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEPPINLQG 202 (433)
T ss_pred CCCCccCCCCC--CCccCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccCCccccee
Confidence 44677543211 111111 123566666555544 344456779999999999876666542 1 126889
Q ss_pred EEEeCCccch
Q 003886 699 AAARNPLCNL 708 (789)
Q Consensus 699 ~v~~~pv~~~ 708 (789)
+++.+|.++.
T Consensus 203 i~iGNg~t~~ 212 (433)
T PLN03016 203 YMLGNPVTYM 212 (433)
T ss_pred eEecCCCcCc
Confidence 9999998765
No 396
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.11 E-value=4.1 Score=48.91 Aligned_cols=88 Identities=8% Similarity=0.085 Sum_probs=48.1
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhh
Q 003886 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (789)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (789)
..|.|||.+ |..... +.+.......++|-|.|.. |+....... ...|..+.-.+
T Consensus 222 RkirV~drE-g~Lns~-se~~~~l~~~LsWkPsgs~----iA~iq~~~s------------d~~IvffErNG-------- 275 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNST-SEPVEGLQHSLSWKPSGSL----IAAIQCKTS------------DSDIVFFERNG-------- 275 (1265)
T ss_pred eeEEEeccc-chhhcc-cCcccccccceeecCCCCe----EeeeeecCC------------CCcEEEEecCC--------
Confidence 567888877 544333 1233445668999999988 777653222 22344443200
Q ss_pred hhhcCCCCCCCee-ecCCCCCccCcceecCCCCEEEEEecC
Q 003886 353 ELKESSSEDLPVV-NLTESISSAFFPRFSPDGKFLVFLSAK 392 (789)
Q Consensus 353 ~~~~~~~~~~~~~-~Lt~~~~~~~~p~~SpDG~~la~~s~~ 392 (789)
..-++.. ........+...+|+.++..|+.....
T Consensus 276 ------L~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~ 310 (1265)
T KOG1920|consen 276 ------LRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSN 310 (1265)
T ss_pred ------ccccccccCCcccccchheeeecCCCCceeeeecc
Confidence 0111111 111122237889999999998875533
No 397
>PLN02209 serine carboxypeptidase
Probab=96.09 E-value=0.026 Score=62.17 Aligned_cols=133 Identities=20% Similarity=0.280 Sum_probs=80.9
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhh-HHH--H------------------HHHHHCCcEEEEEcCC
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY-SKS--L------------------AFLSSVGYSLLIVNYR 630 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~-~~~--~------------------~~la~~Gy~V~~~d~r 630 (789)
.+..+.-|++.... .....|+|+++-|||++...... ... + .-+.+ -..++.+|.+
T Consensus 50 ~~~~lf~~f~es~~--~~~~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~-~anllfiDqP 126 (437)
T PLN02209 50 ENVQFFYYFIKSDK--NPQEDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTK-TANIIFLDQP 126 (437)
T ss_pred CCeEEEEEEEecCC--CCCCCCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhh-cCcEEEecCC
Confidence 45667778877652 34568999999999996532211 100 0 01112 2578999977
Q ss_pred CCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHc-CCCCCccEEEEEcCccHHHHHHHHHh----C------CCceeEE
Q 003886 631 GSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQ----A------PDKFVAA 699 (789)
Q Consensus 631 Gs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~~d~~rv~l~G~S~GG~~a~~~~~~----~------p~~~~a~ 699 (789)
-.+||+........ .....+++|+..++....++ +..-..++.|+|.||||..+..++.. . +-.++++
T Consensus 127 vGtGfSy~~~~~~~-~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~~~~inl~Gi 205 (437)
T PLN02209 127 VGSGFSYSKTPIER-TSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICCNPPINLQGY 205 (437)
T ss_pred CCCCccCCCCCCCc-cCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhcccccCCceeeeeE
Confidence 55777643211111 11123356666766655543 44445679999999999876666542 1 1257899
Q ss_pred EEeCCccch
Q 003886 700 AARNPLCNL 708 (789)
Q Consensus 700 v~~~pv~~~ 708 (789)
++.+|.++.
T Consensus 206 ~igng~td~ 214 (437)
T PLN02209 206 VLGNPITHI 214 (437)
T ss_pred EecCcccCh
Confidence 999998875
No 398
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=96.09 E-value=0.1 Score=55.03 Aligned_cols=129 Identities=12% Similarity=0.118 Sum_probs=78.8
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchh-hHHHHHHHHHCCcEEEEEcCCCCCCC-Cchhhc--------
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-YSKSLAFLSSVGYSLLIVNYRGSLGF-GEEALQ-------- 641 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~-~~~~~~~la~~Gy~V~~~d~rGs~G~-G~~~~~-------- 641 (789)
++.++-+ ++.|.. .++...+||++||.+.+..... .......|.+.||.++++....-.+. -..+..
T Consensus 70 ~~~~fla-L~~~~~--~~~~~G~vIilp~~g~~~d~p~~i~~LR~~L~~~GW~Tlsit~P~~~~~~~p~~~~~~~~~~~a 146 (310)
T PF12048_consen 70 GEERFLA-LWRPAN--SAKPQGAVIILPDWGEHPDWPGLIAPLRRELPDHGWATLSITLPDPAPPASPNRATEAEEVPSA 146 (310)
T ss_pred CCEEEEE-EEeccc--CCCCceEEEEecCCCCCCCcHhHHHHHHHHhhhcCceEEEecCCCcccccCCccCCCCCCCCCC
Confidence 4455555 555652 5667889999999665543333 33455678999999999887641100 000000
Q ss_pred ---cCCCC-----------------CCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCC-ceeEEE
Q 003886 642 ---SLPGK-----------------VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-KFVAAA 700 (789)
Q Consensus 642 ---~~~~~-----------------~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~-~~~a~v 700 (789)
..... .-..-..-+.+++.++.+++ ..+|+|+||+.|+++++.++...+. .+.++|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ari~Aa~~~~~~~~---~~~ivlIg~G~gA~~~~~~la~~~~~~~daLV 223 (310)
T PF12048_consen 147 GDQQLSQPSDEPSPASAQEAEAREAYEERLFARIEAAIAFAQQQG---GKNIVLIGHGTGAGWAARYLAEKPPPMPDALV 223 (310)
T ss_pred CCCCcCCCCCCCccccccHhHHhHHHHHHHHHHHHHHHHHHHhcC---CceEEEEEeChhHHHHHHHHhcCCCcccCeEE
Confidence 00000 00011233455566666654 4569999999999999999987654 478999
Q ss_pred EeCCcc
Q 003886 701 ARNPLC 706 (789)
Q Consensus 701 ~~~pv~ 706 (789)
++++..
T Consensus 224 ~I~a~~ 229 (310)
T PF12048_consen 224 LINAYW 229 (310)
T ss_pred EEeCCC
Confidence 988754
No 399
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.02 E-value=0.043 Score=56.94 Aligned_cols=111 Identities=14% Similarity=0.232 Sum_probs=69.5
Q ss_pred CCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCc--EEEEEcCC--CC-CCCCchhhccCCCCCCcccHHHHHHHHHHHHH
Q 003886 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGY--SLLIVNYR--GS-LGFGEEALQSLPGKVGSQDVNDVLTAIDHVID 664 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy--~V~~~d~r--Gs-~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 664 (789)
...-++||+||...+. ...-....+.....|+ +.+.+-.+ |+ .||.- ...-..+...++...+++|.+
T Consensus 114 ~~k~vlvFvHGfNntf-~dav~R~aqI~~d~g~~~~pVvFSWPS~g~l~~Yn~------DreS~~~Sr~aLe~~lr~La~ 186 (377)
T COG4782 114 SAKTVLVFVHGFNNTF-EDAVYRTAQIVHDSGNDGVPVVFSWPSRGSLLGYNY------DRESTNYSRPALERLLRYLAT 186 (377)
T ss_pred CCCeEEEEEcccCCch-hHHHHHHHHHHhhcCCCcceEEEEcCCCCeeeeccc------chhhhhhhHHHHHHHHHHHHh
Confidence 4568999999954432 1222234455555553 44445444 22 12211 111223446788899999988
Q ss_pred cCCCCCccEEEEEcCccHHHHHHHHHh--------CCCceeEEEEeCCccchh
Q 003886 665 MGLANPSKVTVVGGSHGGFLTTHLIGQ--------APDKFVAAAARNPLCNLA 709 (789)
Q Consensus 665 ~~~~d~~rv~l~G~S~GG~~a~~~~~~--------~p~~~~a~v~~~pv~~~~ 709 (789)
.. ...+|.|++||||.++++.++-+ .+..|+-+|+.+|=.|..
T Consensus 187 ~~--~~~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD~D 237 (377)
T COG4782 187 DK--PVKRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDIDVD 237 (377)
T ss_pred CC--CCceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCChh
Confidence 74 35789999999999999987643 134688899999976653
No 400
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=95.94 E-value=0.13 Score=54.77 Aligned_cols=138 Identities=17% Similarity=0.200 Sum_probs=83.2
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~ 235 (789)
+....+||.-+.|+.+...+ ....+|+........+... .|.+ .-.++.|||-...|+....
T Consensus 167 vRll~ys~skr~lL~~asd~----G~VtlwDv~g~sp~~~~~~-~HsA-----P~~gicfspsne~l~vsVG-------- 228 (673)
T KOG4378|consen 167 VRLLRYSPSKRFLLSIASDK----GAVTLWDVQGMSPIFHASE-AHSA-----PCRGICFSPSNEALLVSVG-------- 228 (673)
T ss_pred EEEeecccccceeeEeeccC----CeEEEEeccCCCcccchhh-hccC-----CcCcceecCCccceEEEec--------
Confidence 45788999999998876554 2667774332333333211 1211 1168999998766554321
Q ss_pred ccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEE
Q 003886 236 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVF 315 (789)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f 315 (789)
-+..|+++|....+...- +..+.....++|+++|-. |+.
T Consensus 229 -----------------------------------~Dkki~~yD~~s~~s~~~--l~y~~Plstvaf~~~G~~----L~a 267 (673)
T KOG4378|consen 229 -----------------------------------YDKKINIYDIRSQASTDR--LTYSHPLSTVAFSECGTY----LCA 267 (673)
T ss_pred -----------------------------------ccceEEEeecccccccce--eeecCCcceeeecCCceE----EEe
Confidence 124688888876544322 234556779999999986 554
Q ss_pred EeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCC
Q 003886 316 VGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPD 382 (789)
Q Consensus 316 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpD 382 (789)
.. -+..|+.||+.. ....+..+..+...+...+|-|-
T Consensus 268 G~---------------s~G~~i~YD~R~---------------~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 268 GN---------------SKGELIAYDMRS---------------TKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred ec---------------CCceEEEEeccc---------------CCCCceEeeecccceeEEEeeec
Confidence 33 234799999852 22344556666666777777543
No 401
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=95.90 E-value=0.048 Score=59.66 Aligned_cols=135 Identities=19% Similarity=0.203 Sum_probs=84.7
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHH---------HH------HCCcEEEEEcCCCCCCC
Q 003886 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAF---------LS------SVGYSLLIVNYRGSLGF 635 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~---------la------~~Gy~V~~~d~rGs~G~ 635 (789)
..+..|..|++.... ..+..|+||++-|||+...........-. |. .+--.++.+|-+-..||
T Consensus 54 ~~~~~LFYwf~eS~~--~P~~dPlvLWLnGGPGCSSl~G~~~E~GPf~v~~~G~tL~~N~ySWnk~aNiLfLd~PvGvGF 131 (454)
T KOG1282|consen 54 SEGRQLFYWFFESEN--NPETDPLVLWLNGGPGCSSLGGLFEENGPFRVKYNGKTLYLNPYSWNKEANILFLDQPVGVGF 131 (454)
T ss_pred CCCceEEEEEEEccC--CCCCCCEEEEeCCCCCccchhhhhhhcCCeEEcCCCCcceeCCccccccccEEEEecCCcCCc
Confidence 467889999998752 45668999999999996533321111000 00 11136788888754666
Q ss_pred CchhhccCCCCCCc-ccHHHHHHH-HHHHHHcCCCCCccEEEEEcCccHHHHHHHHHh----C------CCceeEEEEeC
Q 003886 636 GEEALQSLPGKVGS-QDVNDVLTA-IDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ----A------PDKFVAAAARN 703 (789)
Q Consensus 636 G~~~~~~~~~~~~~-~~~~D~~~~-i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~----~------p~~~~a~v~~~ 703 (789)
.-+...... ..+. ...+|...+ .+|+.+.+..-...+.|.|-||+|...-.+|.. . +-.+|++++.+
T Consensus 132 SYs~~~~~~-~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~iNLkG~~IGN 210 (454)
T KOG1282|consen 132 SYSNTSSDY-KTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNINLKGYAIGN 210 (454)
T ss_pred cccCCCCcC-cCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCcccceEEEecC
Confidence 543322111 1222 224666665 455555677777889999999999776666542 1 12689999999
Q ss_pred Cccch
Q 003886 704 PLCNL 708 (789)
Q Consensus 704 pv~~~ 708 (789)
|++|.
T Consensus 211 g~td~ 215 (454)
T KOG1282|consen 211 GLTDP 215 (454)
T ss_pred cccCc
Confidence 98875
No 402
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.90 E-value=2.4 Score=43.21 Aligned_cols=99 Identities=13% Similarity=0.069 Sum_probs=65.6
Q ss_pred cceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCC
Q 003886 335 CALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (789)
Q Consensus 335 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~ 414 (789)
.+|-++|+... ..+.+..+..+...+...+.+-+|..||..|.+++ -|.++|..+|
T Consensus 159 GqvQi~dL~~~--------------~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGT----------LIRIFdt~~g 214 (346)
T KOG2111|consen 159 GQVQIVDLAST--------------KPNAPSIINAHDSDIACVALNLQGTLVATASTKGT----------LIRIFDTEDG 214 (346)
T ss_pred ceEEEEEhhhc--------------CcCCceEEEcccCceeEEEEcCCccEEEEeccCcE----------EEEEEEcCCC
Confidence 47888888210 22234566677778888999999999999887752 3777888877
Q ss_pred CCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEEC
Q 003886 415 GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 475 (789)
Q Consensus 415 ~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl 475 (789)
+..+.-....+ ...+..+.||||+..|.+ +++.|+.+++.+..
T Consensus 215 ~~l~E~RRG~d-----------------~A~iy~iaFSp~~s~Lav-sSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 215 TLLQELRRGVD-----------------RADIYCIAFSPNSSWLAV-SSDKGTLHIFSLRD 257 (346)
T ss_pred cEeeeeecCCc-----------------hheEEEEEeCCCccEEEE-EcCCCeEEEEEeec
Confidence 66422111000 013456789999986654 56678888888764
No 403
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=95.84 E-value=0.63 Score=49.27 Aligned_cols=146 Identities=16% Similarity=0.182 Sum_probs=83.8
Q ss_pred CccCceEEEEEccCCce--Eecc---CCC-CCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEec
Q 003886 269 GKRQPSLFVININSGEV--QAVK---GIP-KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 342 (789)
Q Consensus 269 ~~~~~~l~v~d~~~g~~--~~l~---~~~-~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~ 342 (789)
+..+..|.+||+..... ..+. -.. ....+..++|.|-.+.. +.+++ ..+.|.++|+
T Consensus 196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~l---F~sv~---------------dd~~L~iwD~ 257 (422)
T KOG0264|consen 196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDL---FGSVG---------------DDGKLMIWDT 257 (422)
T ss_pred ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhh---heeec---------------CCCeEEEEEc
Confidence 33456788888765322 1110 011 23367889999977761 23333 2347888998
Q ss_pred ccccchhhhhhhhcCCCCCCCe-eecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCccc
Q 003886 343 SLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLE 421 (789)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~-~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~ 421 (789)
+. .+.+. .....+.+.+...+|+|-+..|+-+... ...|.+||+..-.....+.
T Consensus 258 R~---------------~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~----------D~tV~LwDlRnL~~~lh~~ 312 (422)
T KOG0264|consen 258 RS---------------NTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSA----------DKTVALWDLRNLNKPLHTF 312 (422)
T ss_pred CC---------------CCCCCcccccccCCceeEEEeCCCCCceEEeccC----------CCcEEEeechhcccCceec
Confidence 42 01222 2333446667888999976655433322 2358999986522211111
Q ss_pred ceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEEC
Q 003886 422 KIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 475 (789)
Q Consensus 422 ~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl 475 (789)
.+ ....+..+.|||+...++.++..+++..+|.+.-
T Consensus 313 -----------------e~-H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 313 -----------------EG-HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred -----------------cC-CCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 00 1123457789999999998888777777776554
No 404
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.83 E-value=0.068 Score=58.79 Aligned_cols=154 Identities=12% Similarity=0.138 Sum_probs=87.5
Q ss_pred cccceeecCCCCEEEEEeecCCCCCCCccCCCC--CCCCCCcCCCCCCCccee-eCCccccc-CCccCceEEEEEccCCc
Q 003886 209 WFEGISWNSDETLIAYVAEEPSPSKPTFSLGST--KGGSSDKDCNSWKGQGDW-EEDWGETY-AGKRQPSLFVININSGE 284 (789)
Q Consensus 209 ~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~d~g~~~-~~~~~~~l~v~d~~~g~ 284 (789)
|...+..--+|+.|..++.+.+.. .|+.... -......++..|+....+ ..+ .+.. ++.-+..||+||+.+|.
T Consensus 75 WVNDiiL~~~~~tlIS~SsDtTVK--~W~~~~~~~~c~stir~H~DYVkcla~~ak~-~~lvaSgGLD~~IflWDin~~~ 151 (735)
T KOG0308|consen 75 WVNDIILCGNGKTLISASSDTTVK--VWNAHKDNTFCMSTIRTHKDYVKCLAYIAKN-NELVASGGLDRKIFLWDINTGT 151 (735)
T ss_pred HHhhHHhhcCCCceEEecCCceEE--EeecccCcchhHhhhhcccchheeeeecccC-ceeEEecCCCccEEEEEccCcc
Confidence 346666667777777766665433 3432211 122334456666655455 222 2332 23346789999999885
Q ss_pred eEeccCCCC-----------CCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhh
Q 003886 285 VQAVKGIPK-----------SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELE 353 (789)
Q Consensus 285 ~~~l~~~~~-----------~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~ 353 (789)
.+.+. ... ..++.+++-.+.|. ++..+ .....|..+|..
T Consensus 152 ~~l~~-s~n~~t~~sl~sG~k~siYSLA~N~t~t-----~ivsG--------------gtek~lr~wDpr---------- 201 (735)
T KOG0308|consen 152 ATLVA-SFNNVTVNSLGSGPKDSIYSLAMNQTGT-----IIVSG--------------GTEKDLRLWDPR---------- 201 (735)
T ss_pred hhhhh-hccccccccCCCCCccceeeeecCCcce-----EEEec--------------CcccceEEeccc----------
Confidence 53221 111 11233333334442 22222 123367788862
Q ss_pred hhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecC
Q 003886 354 LKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 412 (789)
Q Consensus 354 ~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~ 412 (789)
...+...|-.+...+.....++||++++..+.+. .|.+||+.
T Consensus 202 ------t~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDg-----------tIrlWdLg 243 (735)
T KOG0308|consen 202 ------TCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDG-----------TIRLWDLG 243 (735)
T ss_pred ------cccceeeeeccccceEEEEEcCCCCeEeecCCCc-----------eEEeeecc
Confidence 3445667777777888999999999998777553 48888874
No 405
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.76 E-value=0.94 Score=45.83 Aligned_cols=176 Identities=12% Similarity=0.167 Sum_probs=86.1
Q ss_pred cceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccC
Q 003886 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (789)
Q Consensus 211 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (789)
++++|.||.++|+.+.+.+ ..|+.++.++.-.+.+.
T Consensus 25 SGLTy~pd~~tLfaV~d~~-------------------------------------------~~i~els~~G~vlr~i~- 60 (248)
T PF06977_consen 25 SGLTYNPDTGTLFAVQDEP-------------------------------------------GEIYELSLDGKVLRRIP- 60 (248)
T ss_dssp EEEEEETTTTEEEEEETTT-------------------------------------------TEEEEEETT--EEEEEE-
T ss_pred cccEEcCCCCeEEEEECCC-------------------------------------------CEEEEEcCCCCEEEEEe-
Confidence 8999999999988775542 67889998654444543
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecC--
Q 003886 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-- 368 (789)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt-- 368 (789)
..+......+++.-+|+ ++.+. .|...|+.++++.... .......+.++
T Consensus 61 l~g~~D~EgI~y~g~~~-----~vl~~--------------Er~~~L~~~~~~~~~~----------~~~~~~~~~~~l~ 111 (248)
T PF06977_consen 61 LDGFGDYEGITYLGNGR-----YVLSE--------------ERDQRLYIFTIDDDTT----------SLDRADVQKISLG 111 (248)
T ss_dssp -SS-SSEEEEEE-STTE-----EEEEE--------------TTTTEEEEEEE----T----------T--EEEEEEEE--
T ss_pred CCCCCCceeEEEECCCE-----EEEEE--------------cCCCcEEEEEEecccc----------ccchhhceEEecc
Confidence 33334566778876664 34443 1344788887731100 00011112222
Q ss_pred ---CCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccC
Q 003886 369 ---ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 445 (789)
Q Consensus 369 ---~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~ 445 (789)
.++......+|.|.++.|+.+..+. ...|+-++...+... + .+........ ..+....
T Consensus 112 ~~~~~N~G~EGla~D~~~~~L~v~kE~~---------P~~l~~~~~~~~~~~-~-----~~~~~~~~~~----~~~~~~d 172 (248)
T PF06977_consen 112 FPNKGNKGFEGLAYDPKTNRLFVAKERK---------PKRLYEVNGFPGGFD-L-----FVSDDQDLDD----DKLFVRD 172 (248)
T ss_dssp -S---SS--EEEEEETTTTEEEEEEESS---------SEEEEEEESTT-SS--------EEEE-HHHH-----HT--SS-
T ss_pred cccCCCcceEEEEEcCCCCEEEEEeCCC---------ChhhEEEccccCccc-e-----eecccccccc----ccceecc
Confidence 1233467899999999988776543 234666664221110 0 0000000000 0011123
Q ss_pred CCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEE
Q 003886 446 ILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 481 (789)
Q Consensus 446 ~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~ 481 (789)
++.+.+.|....||+.+... ..|..+|. +|++.
T Consensus 173 ~S~l~~~p~t~~lliLS~es--~~l~~~d~-~G~~~ 205 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDES--RLLLELDR-QGRVV 205 (248)
T ss_dssp --EEEEETTTTEEEEEETTT--TEEEEE-T-T--EE
T ss_pred ccceEEcCCCCeEEEEECCC--CeEEEECC-CCCEE
Confidence 45667888877888876433 35677785 56553
No 406
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=95.68 E-value=0.048 Score=58.84 Aligned_cols=132 Identities=20% Similarity=0.279 Sum_probs=84.9
Q ss_pred eecCCCeeEEEEEEecCCCCCCCCCcEEEEEcC-CCCCCCchhh-----HHHHHHHHHCCcEEEEEcCCCCCCCCchhhc
Q 003886 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHG-GPHSVSLSSY-----SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQ 641 (789)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HG-g~~~~~~~~~-----~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~ 641 (789)
|.+..+....-+++.+..+. ....|+.++|-| ||.+ ..| ....+...+.|-.|+..++|= ||++..-
T Consensus 63 F~~~~~~~~Qq~~y~n~~~~-~~~gPiFLmIGGEgp~~---~~wv~~~~~~~~~~AkkfgA~v~~lEHRF---YG~S~P~ 135 (514)
T KOG2182|consen 63 FDSSNGKFFQQRFYNNNQWA-KPGGPIFLMIGGEGPES---DKWVGNENLTWLQWAKKFGATVFQLEHRF---YGQSSPI 135 (514)
T ss_pred hhcchhhhhhhheeeccccc-cCCCceEEEEcCCCCCC---CCccccCcchHHHHHHHhCCeeEEeeeec---cccCCCC
Confidence 33334444445556555432 456788888866 3332 222 123444557899999999995 4543211
Q ss_pred ------cCCCCCCcccHHHHHHHHHHHHHcC-CCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 642 ------SLPGKVGSQDVNDVLTAIDHVIDMG-LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 642 ------~~~~~~~~~~~~D~~~~i~~l~~~~-~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
.+.-.--.+.++|++..|+.+-.+- .-|..+.+.+|.||-|.+++|+-.++|+++.++|+.++..
T Consensus 136 ~~~st~nlk~LSs~QALaDla~fI~~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSapv 207 (514)
T KOG2182|consen 136 GDLSTSNLKYLSSLQALADLAEFIKAMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAPV 207 (514)
T ss_pred CCCcccchhhhhHHHHHHHHHHHHHHHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeecccccce
Confidence 1111112334678888888876653 4455699999999999999999999999999888877543
No 407
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=95.67 E-value=0.26 Score=50.47 Aligned_cols=224 Identities=10% Similarity=0.127 Sum_probs=132.2
Q ss_pred cccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCC
Q 003886 122 ANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQT 199 (789)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~ 199 (789)
.+...+.+-++++.++ +. .+|-.+. ...+..+++|+---+|.-..++. ....|+ ..+..+..+. .
T Consensus 168 tgs~DrtikIwDlatg--~L-kltltGh---i~~vr~vavS~rHpYlFs~gedk-----~VKCwDLe~nkvIR~YhG--H 234 (460)
T KOG0285|consen 168 TGSADRTIKIWDLATG--QL-KLTLTGH---IETVRGVAVSKRHPYLFSAGEDK-----QVKCWDLEYNKVIRHYHG--H 234 (460)
T ss_pred ecCCCceeEEEEcccC--eE-EEeecch---hheeeeeeecccCceEEEecCCC-----eeEEEechhhhhHHHhcc--c
Confidence 3445566777777443 11 2222211 13467788998888875554433 556673 3333332221 1
Q ss_pred ccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEE
Q 003886 200 VHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVIN 279 (789)
Q Consensus 200 ~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d 279 (789)
. ..| .++...|--+.|+..+.+...+ .|+...+........+..-+.+..+.+--+..+++..+..|.+||
T Consensus 235 l-S~V------~~L~lhPTldvl~t~grDst~R--vWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWD 305 (460)
T KOG0285|consen 235 L-SGV------YCLDLHPTLDVLVTGGRDSTIR--VWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWD 305 (460)
T ss_pred c-cee------EEEeccccceeEEecCCcceEE--EeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEee
Confidence 1 112 5778888877777766665544 455444544445555555555555655446667777889999999
Q ss_pred ccCCceE-eccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCC
Q 003886 280 INSGEVQ-AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESS 358 (789)
Q Consensus 280 ~~~g~~~-~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 358 (789)
+..|+.. .+ +.....+...+..|.... |.+... ..|-.++++
T Consensus 306 l~agkt~~tl--t~hkksvral~lhP~e~~------fASas~--------------dnik~w~~p--------------- 348 (460)
T KOG0285|consen 306 LRAGKTMITL--THHKKSVRALCLHPKENL------FASASP--------------DNIKQWKLP--------------- 348 (460)
T ss_pred eccCceeEee--ecccceeeEEecCCchhh------hhccCC--------------ccceeccCC---------------
Confidence 9887654 44 566667788888887654 333211 246666764
Q ss_pred CCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCC
Q 003886 359 SEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 417 (789)
Q Consensus 359 ~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~ 417 (789)
++.-+.+|..+...+...+...||- ++... +...|+.|||.++-.-
T Consensus 349 -~g~f~~nlsgh~~iintl~~nsD~v--~~~G~----------dng~~~fwdwksg~ny 394 (460)
T KOG0285|consen 349 -EGEFLQNLSGHNAIINTLSVNSDGV--LVSGG----------DNGSIMFWDWKSGHNY 394 (460)
T ss_pred -ccchhhccccccceeeeeeeccCce--EEEcC----------CceEEEEEecCcCccc
Confidence 4455566776666666667777763 23332 2346999999886553
No 408
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.63 E-value=1.8 Score=43.43 Aligned_cols=182 Identities=21% Similarity=0.184 Sum_probs=89.0
Q ss_pred CceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhh
Q 003886 272 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (789)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (789)
...|+.+|..+|+...-...+...... + ..++.. |++.. ....|+.+|+
T Consensus 45 ~~~l~~~d~~tG~~~W~~~~~~~~~~~-~--~~~~~~----v~v~~---------------~~~~l~~~d~--------- 93 (238)
T PF13360_consen 45 DGNLYALDAKTGKVLWRFDLPGPISGA-P--VVDGGR----VYVGT---------------SDGSLYALDA--------- 93 (238)
T ss_dssp TSEEEEEETTTSEEEEEEECSSCGGSG-E--EEETTE----EEEEE---------------TTSEEEEEET---------
T ss_pred CCEEEEEECCCCCEEEEeeccccccce-e--eecccc----ccccc---------------ceeeeEeccc---------
Confidence 368999999999876542122222111 2 334444 55544 1226999997
Q ss_pred hhhhcCCCCCCCeeec---CCC--CCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeE
Q 003886 352 LELKESSSEDLPVVNL---TES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 426 (789)
Q Consensus 352 ~~~~~~~~~~~~~~~L---t~~--~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v 426 (789)
.+|+...- ... ......+....+|+.+++.... ..|+.+|..+|...-.
T Consensus 94 --------~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------g~l~~~d~~tG~~~w~------- 147 (238)
T PF13360_consen 94 --------KTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSS-----------GKLVALDPKTGKLLWK------- 147 (238)
T ss_dssp --------TTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETC-----------SEEEEEETTTTEEEEE-------
T ss_pred --------CCcceeeeeccccccccccccccCceEecCEEEEEecc-----------CcEEEEecCCCcEEEE-------
Confidence 55554322 111 1112333444457777666643 2589999887765210
Q ss_pred EeeeeccCC-CCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEE
Q 003886 427 IPVVQCAEG-DCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAV 505 (789)
Q Consensus 427 ~~~~~~~~~-~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~ 505 (789)
.++ ..+.. ..+. ........+.+ .++ .+++.. ..+. ++.+|+.+|+... ...... .......+++.+++.
T Consensus 148 ~~~-~~~~~~~~~~-~~~~~~~~~~~-~~~-~v~~~~-~~g~--~~~~d~~tg~~~w-~~~~~~-~~~~~~~~~~~l~~~ 218 (238)
T PF13360_consen 148 YPV-GEPRGSSPIS-SFSDINGSPVI-SDG-RVYVSS-GDGR--VVAVDLATGEKLW-SKPISG-IYSLPSVDGGTLYVT 218 (238)
T ss_dssp EES-STT-SS--EE-EETTEEEEEEC-CTT-EEEEEC-CTSS--EEEEETTTTEEEE-EECSS--ECECEECCCTEEEEE
T ss_pred eec-CCCCCCccee-eecccccceEE-ECC-EEEEEc-CCCe--EEEEECCCCCEEE-EecCCC-ccCCceeeCCEEEEE
Confidence 000 00000 0000 00000011122 244 565543 3333 6777999998553 222221 222356677777666
Q ss_pred EeCCCCCCeEEEEeeccc
Q 003886 506 SSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 506 ~ss~~~p~~i~~~~~~~~ 523 (789)
. .. ..++.+|+.++
T Consensus 219 ~-~~---~~l~~~d~~tG 232 (238)
T PF13360_consen 219 S-SD---GRLYALDLKTG 232 (238)
T ss_dssp E-TT---TEEEEEETTTT
T ss_pred e-CC---CEEEEEECCCC
Confidence 6 32 56888898765
No 409
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.61 E-value=0.65 Score=55.27 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=39.2
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 229 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~ 229 (789)
+....+--|+..|.++...+ .++.++ ......-+..+..++ ...+||||++.++++....
T Consensus 71 i~s~~fl~d~~~i~v~~~~G----~iilvd~et~~~eivg~vd~GI----------~aaswS~Dee~l~liT~~~ 131 (1265)
T KOG1920|consen 71 IVSVQFLADTNSICVITALG----DIILVDPETLELEIVGNVDNGI----------SAASWSPDEELLALITGRQ 131 (1265)
T ss_pred eEEEEEecccceEEEEecCC----cEEEEcccccceeeeeeccCce----------EEEeecCCCcEEEEEeCCc
Confidence 55666777777777765544 355554 333333333444454 7999999999999987654
No 410
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.54 E-value=2.1 Score=43.40 Aligned_cols=88 Identities=8% Similarity=0.010 Sum_probs=48.3
Q ss_pred ccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCC-CCcccceeeEEeeeeccCCCCCccccccCCCCCcc
Q 003886 373 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN-FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW 451 (789)
Q Consensus 373 ~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~-~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~w 451 (789)
.....+|+|..+.|.+...+.. ..||.++...... ......... -..++...++.+.+
T Consensus 182 GfEGlA~d~~~~~l~~aKEr~P---------~~I~~~~~~~~~l~~~~~~~~~~------------~~~~f~~DvSgl~~ 240 (316)
T COG3204 182 GFEGLAWDPVDHRLFVAKERNP---------IGIFEVTQSPSSLSVHASLDPTA------------DRDLFVLDVSGLEF 240 (316)
T ss_pred CceeeecCCCCceEEEEEccCC---------cEEEEEecCCcccccccccCccc------------ccceEeecccccee
Confidence 4678999999999988887753 3577776322111 011111111 11123345567777
Q ss_pred ccCCCEEEEEEEeCCeEEEEEEECCCCcEEEe
Q 003886 452 LSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 483 (789)
Q Consensus 452 s~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~l 483 (789)
.+....+++.+... ..|..+|+++.-+..+
T Consensus 241 ~~~~~~LLVLS~ES--r~l~Evd~~G~~~~~l 270 (316)
T COG3204 241 NAITNSLLVLSDES--RRLLEVDLSGEVIELL 270 (316)
T ss_pred cCCCCcEEEEecCC--ceEEEEecCCCeeeeE
Confidence 76666676665433 3566777744434333
No 411
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=95.53 E-value=2.7 Score=42.65 Aligned_cols=59 Identities=15% Similarity=0.091 Sum_probs=34.5
Q ss_pred CCCCccccCCCEEEEEEEeCCeEEEEEEECCCC-cEEEecCCCCCceeEEeeecCCEEEEEEe
Q 003886 446 ILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSG-ELLRITPAESNFSWSLLTLDGDNIIAVSS 507 (789)
Q Consensus 446 ~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg-~~~~lt~~~~~~~~~~~s~dg~~l~~~~s 507 (789)
+..+.|+|=-+++ +++..+|-..+| |+.+. ++.++..-...++..+|+.+|..|+...+
T Consensus 235 VNai~Fhp~~~tf-aTgGsDG~V~~W--d~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 235 VNAIAFHPIHGTF-ATGGSDGIVNIW--DLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eceeEeccccceE-EecCCCceEEEc--cCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 3466777764433 444444544444 65443 34455554455666788999988776654
No 412
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=95.52 E-value=2 Score=43.13 Aligned_cols=110 Identities=15% Similarity=0.171 Sum_probs=66.6
Q ss_pred cCceEEEEEccCCceEeccCCCC-CCccceEEEeeCCCCCccEEEEEeecCCc-eeeeeeeeccCC-cceEEEecccccc
Q 003886 271 RQPSLFVININSGEVQAVKGIPK-SLSVGQVVWAPLNEGLHQYLVFVGWSSET-RKLGIKYCYNRP-CALYAVRVSLYKS 347 (789)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~~-~~~~~~~~wSPDg~~~~~~l~f~~~~~~~-~~~g~~~~~~~~-~~l~~~d~~~~~~ 347 (789)
+..+|.+.|+.+|..... ..+ ...+-.+.|||..++ +++++.-++. +-+.+ .|. ..+..+|..
T Consensus 166 r~~~VrLCDi~SGs~sH~--LsGHr~~vlaV~Wsp~~e~----vLatgsaDg~irlWDi----Rrasgcf~~lD~h---- 231 (397)
T KOG4283|consen 166 RDVQVRLCDIASGSFSHT--LSGHRDGVLAVEWSPSSEW----VLATGSADGAIRLWDI----RRASGCFRVLDQH---- 231 (397)
T ss_pred CCCcEEEEeccCCcceee--eccccCceEEEEeccCcee----EEEecCCCceEEEEEe----ecccceeEEeecc----
Confidence 447889999999987655 333 336778999999998 8887743221 11111 011 123334431
Q ss_pred hhhhhhhhcCCCCCCCeee---cCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCC
Q 003886 348 EASELELKESSSEDLPVVN---LTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 417 (789)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~---Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~ 417 (789)
++..... =+.+.+.+...+|+.||.+++....++ ++.+|+...|...
T Consensus 232 ------------n~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~-----------r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 232 ------------NTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD-----------RIRVWNMESGRNT 281 (397)
T ss_pred ------------cCccCccccccccccceeeeeeecccchhhhhccCcc-----------ceEEeecccCccc
Confidence 2222111 233456688899999999988766443 5788887766543
No 413
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.52 E-value=1.7 Score=44.11 Aligned_cols=58 Identities=17% Similarity=0.265 Sum_probs=42.4
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEE
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLI 222 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~l 222 (789)
.++++..|+||-+.|..+.+ ...++.++...|+..+.+.+.. .|+ .+.+.|.-+|+.+
T Consensus 86 ~nvS~LTynp~~rtLFav~n---~p~~iVElt~~GdlirtiPL~g-~~D-------pE~Ieyig~n~fv 143 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTN---KPAAIVELTKEGDLIRTIPLTG-FSD-------PETIEYIGGNQFV 143 (316)
T ss_pred ccccceeeCCCcceEEEecC---CCceEEEEecCCceEEEecccc-cCC-------hhHeEEecCCEEE
Confidence 45889999999999876654 3467888888888888887754 221 2578888877643
No 414
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.52 E-value=0.042 Score=62.10 Aligned_cols=70 Identities=21% Similarity=0.406 Sum_probs=43.3
Q ss_pred CcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHc--C--CCC---CccEEEEEcCccHHHHHHHHHhCC
Q 003886 621 GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM--G--LAN---PSKVTVVGGSHGGFLTTHLIGQAP 693 (789)
Q Consensus 621 Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~--~--~~d---~~rv~l~G~S~GG~~a~~~~~~~p 693 (789)
.|..+++|+- +++ .+..|..-....+-+.+||+++++. + ..+ +..|+++||||||++|..++.. |
T Consensus 132 ~~DFFaVDFn------Ee~-tAm~G~~l~dQtEYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~tl-k 203 (973)
T KOG3724|consen 132 SFDFFAVDFN------EEF-TAMHGHILLDQTEYVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLTL-K 203 (973)
T ss_pred ccceEEEccc------chh-hhhccHhHHHHHHHHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHhh-h
Confidence 3566777753 222 1223333233355677788887763 2 334 6779999999999999988874 4
Q ss_pred CceeE
Q 003886 694 DKFVA 698 (789)
Q Consensus 694 ~~~~a 698 (789)
...++
T Consensus 204 n~~~~ 208 (973)
T KOG3724|consen 204 NEVQG 208 (973)
T ss_pred hhccc
Confidence 33333
No 415
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.46 E-value=0.065 Score=54.27 Aligned_cols=100 Identities=14% Similarity=0.158 Sum_probs=64.2
Q ss_pred cEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHH-HHHHHHcCCCCCc
Q 003886 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTA-IDHVIDMGLANPS 671 (789)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~-i~~l~~~~~~d~~ 671 (789)
|.++++|++.+. ...|.....+|... ..|+..+.+|-.+... ...+++|..+. ++.+.+. -...
T Consensus 1 ~pLF~fhp~~G~--~~~~~~L~~~l~~~-~~v~~l~a~g~~~~~~----------~~~~l~~~a~~yv~~Ir~~--QP~G 65 (257)
T COG3319 1 PPLFCFHPAGGS--VLAYAPLAAALGPL-LPVYGLQAPGYGAGEQ----------PFASLDDMAAAYVAAIRRV--QPEG 65 (257)
T ss_pred CCEEEEcCCCCc--HHHHHHHHHHhccC-ceeeccccCccccccc----------ccCCHHHHHHHHHHHHHHh--CCCC
Confidence 568889996663 55676666777666 8899999887332111 12335555543 3333332 2356
Q ss_pred cEEEEEcCccHHHHHHHHHhC---CCceeEEEEeCCccc
Q 003886 672 KVTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNPLCN 707 (789)
Q Consensus 672 rv~l~G~S~GG~~a~~~~~~~---p~~~~a~v~~~pv~~ 707 (789)
.+.+.|||+||+++.-+|.+- -+-+..+++..++..
T Consensus 66 Py~L~G~S~GG~vA~evA~qL~~~G~~Va~L~llD~~~~ 104 (257)
T COG3319 66 PYVLLGWSLGGAVAFEVAAQLEAQGEEVAFLGLLDAVPP 104 (257)
T ss_pred CEEEEeeccccHHHHHHHHHHHhCCCeEEEEEEeccCCC
Confidence 799999999999999888752 234566666655554
No 416
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.45 E-value=0.15 Score=56.11 Aligned_cols=59 Identities=14% Similarity=0.214 Sum_probs=39.2
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeec
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 228 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~ 228 (789)
+...+|-|||..|+...... ++..+ .+|...+.+. +..+-| ..++||.||++.|..+.+
T Consensus 15 i~d~afkPDGsqL~lAAg~r-----lliyD~ndG~llqtLK---gHKDtV------ycVAys~dGkrFASG~aD 74 (1081)
T KOG1538|consen 15 INDIAFKPDGTQLILAAGSR-----LLVYDTSDGTLLQPLK---GHKDTV------YCVAYAKDGKRFASGSAD 74 (1081)
T ss_pred hheeEECCCCceEEEecCCE-----EEEEeCCCcccccccc---cccceE------EEEEEccCCceeccCCCc
Confidence 67889999999998875543 66655 4444333222 222223 789999999998875444
No 417
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.43 E-value=0.4 Score=47.11 Aligned_cols=117 Identities=15% Similarity=0.223 Sum_probs=62.9
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHH-CC--cEEEEEcCCCCCCCCchhhccCCCC-C
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VG--YSLLIVNYRGSLGFGEEALQSLPGK-V 647 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~-~G--y~V~~~d~rGs~G~G~~~~~~~~~~-~ 647 (789)
.|.+.+-..+.|.-.+.+...|+|+++.|.|+. ...|..+...|.. .+ ..+..+-.-|..+.-.+.++..... -
T Consensus 9 ~gl~~si~~~~~~v~~~~~~~~li~~IpGNPG~--~gFY~~F~~~L~~~l~~r~~~wtIsh~~H~~~P~sl~~~~s~~~~ 86 (301)
T KOG3975|consen 9 SGLPTSILTLKPWVTKSGEDKPLIVWIPGNPGL--LGFYTEFARHLHLNLIDRLPVWTISHAGHALMPASLREDHSHTNE 86 (301)
T ss_pred cCCcccceeeeeeeccCCCCceEEEEecCCCCc--hhHHHHHHHHHHHhcccccceeEEeccccccCCcccccccccccc
Confidence 444455555555433456788999999998884 3334444444432 22 2344444433322221111111111 1
Q ss_pred CcccHHHHHH-HHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHh
Q 003886 648 GSQDVNDVLT-AIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ 691 (789)
Q Consensus 648 ~~~~~~D~~~-~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~ 691 (789)
.....+|+.+ -++++.+. .-...||.++|||-|+|+++.++-.
T Consensus 87 eifsL~~QV~HKlaFik~~-~Pk~~ki~iiGHSiGaYm~Lqil~~ 130 (301)
T KOG3975|consen 87 EIFSLQDQVDHKLAFIKEY-VPKDRKIYIIGHSIGAYMVLQILPS 130 (301)
T ss_pred cccchhhHHHHHHHHHHHh-CCCCCEEEEEecchhHHHHHHHhhh
Confidence 1122444443 45555553 2345789999999999999999874
No 418
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=95.34 E-value=0.023 Score=56.55 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=35.1
Q ss_pred HHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhC----CCceeEEEEeCC
Q 003886 655 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA----PDKFVAAAARNP 704 (789)
Q Consensus 655 ~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~----p~~~~a~v~~~p 704 (789)
...|++|+.+...-.+.+|.+.|||.||++|..++... .+++..+...++
T Consensus 68 q~~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDg 121 (224)
T PF11187_consen 68 QKSALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDG 121 (224)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeC
Confidence 35566666553111234699999999999999999873 347788877665
No 419
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=95.27 E-value=0.072 Score=56.76 Aligned_cols=120 Identities=15% Similarity=0.110 Sum_probs=79.3
Q ss_pred cCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeC-CccchhhhhcC---CCCCcchh-hhhccCccccccCCCCC
Q 003886 665 MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN-PLCNLALMVGT---TDIPDWCY-VESYGSKGKDSFTESPS 739 (789)
Q Consensus 665 ~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~-pv~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~ 739 (789)
...++.++.+|.|+|-=|..+..+++ ..+|++|++... ++.++...+.. .-...|.+ ...|...++-...+.
T Consensus 166 ~~~~~i~~FvV~GaSKRGWTtWltaa-~D~RV~aivP~Vid~LN~~~~l~h~y~~yG~~ws~a~~dY~~~gi~~~l~t-- 242 (367)
T PF10142_consen 166 KFGVNIEKFVVTGASKRGWTTWLTAA-VDPRVKAIVPIVIDVLNMKANLEHQYRSYGGNWSFAFQDYYNEGITQQLDT-- 242 (367)
T ss_pred hcCCCccEEEEeCCchHhHHHHHhhc-cCcceeEEeeEEEccCCcHHHHHHHHHHhCCCCccchhhhhHhCchhhcCC--
Confidence 34578899999999999999998888 456888887653 44444322110 00001110 001111112222222
Q ss_pred hhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 740 VEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 740 ~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.+..+...-.+|+.+.++++.|-|||.|..|+...+..+.-+++.|+.
T Consensus 243 p~f~~L~~ivDP~~Y~~rL~~PK~ii~atgDeFf~pD~~~~y~d~L~G 290 (367)
T PF10142_consen 243 PEFDKLMQIVDPYSYRDRLTMPKYIINATGDEFFVPDSSNFYYDKLPG 290 (367)
T ss_pred HHHHHHHHhcCHHHHHHhcCccEEEEecCCCceeccCchHHHHhhCCC
Confidence 244455566799999999999999999999999999999999999874
No 420
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=95.14 E-value=0.073 Score=56.88 Aligned_cols=99 Identities=17% Similarity=0.235 Sum_probs=66.2
Q ss_pred EEEEEcCCCCCCCchhhHHHHHHHHHCCcE---EEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCC
Q 003886 594 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYS---LLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (789)
Q Consensus 594 ~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~---V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (789)
.+|++||... ....|......++..|+. +..+++.+..+.+ ......+.+.+-++.+... ...
T Consensus 61 pivlVhG~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~~~~~~~ql~~~V~~~l~~--~ga 126 (336)
T COG1075 61 PIVLVHGLGG--GYGNFLPLDYRLAILGWLTNGVYAFELSGGDGTY----------SLAVRGEQLFAYVDEVLAK--TGA 126 (336)
T ss_pred eEEEEccCcC--CcchhhhhhhhhcchHHHhcccccccccccCCCc----------cccccHHHHHHHHHHHHhh--cCC
Confidence 5678899632 344555555557777777 8888886531111 1122245555666665554 235
Q ss_pred ccEEEEEcCccHHHHHHHHHhCC--CceeEEEEeCCcc
Q 003886 671 SKVTVVGGSHGGFLTTHLIGQAP--DKFVAAAARNPLC 706 (789)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~~~~~p--~~~~a~v~~~pv~ 706 (789)
+++.++|||+||..+..++...+ .+++.++..++.-
T Consensus 127 ~~v~LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~tp~ 164 (336)
T COG1075 127 KKVNLIGHSMGGLDSRYYLGVLGGANRVASVVTLGTPH 164 (336)
T ss_pred CceEEEeecccchhhHHHHhhcCccceEEEEEEeccCC
Confidence 88999999999999999988877 6888888877644
No 421
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=95.01 E-value=2.1 Score=46.92 Aligned_cols=114 Identities=10% Similarity=-0.034 Sum_probs=65.6
Q ss_pred CccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCC--
Q 003886 295 LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS-- 372 (789)
Q Consensus 295 ~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~-- 372 (789)
..+..+.|+-||-. ++..+ ....+|++|+ .+.++..+..+.+
T Consensus 229 ~svTal~F~d~gL~----~aVGt---------------s~G~v~iyDL-----------------Ra~~pl~~kdh~~e~ 272 (703)
T KOG2321|consen 229 PSVTALKFRDDGLH----VAVGT---------------STGSVLIYDL-----------------RASKPLLVKDHGYEL 272 (703)
T ss_pred CcceEEEecCCcee----EEeec---------------cCCcEEEEEc-----------------ccCCceeecccCCcc
Confidence 35778899999877 66544 3347999998 4444444444332
Q ss_pred ccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccc
Q 003886 373 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 452 (789)
Q Consensus 373 ~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws 452 (789)
.+-...|-+.+.+=..++++. .-|.+||-.+|....... +...+..+++-
T Consensus 273 pi~~l~~~~~~~q~~v~S~Dk----------~~~kiWd~~~Gk~~asiE--------------------pt~~lND~C~~ 322 (703)
T KOG2321|consen 273 PIKKLDWQDTDQQNKVVSMDK----------RILKIWDECTGKPMASIE--------------------PTSDLNDFCFV 322 (703)
T ss_pred ceeeecccccCCCceEEecch----------HHhhhcccccCCceeecc--------------------ccCCcCceeee
Confidence 244455544433323334433 236778877765421110 11134566778
Q ss_pred cCCCEEEEEEEeCCeEEEEEEEC
Q 003886 453 SDGCTMLLSSIWGSSQVIISVNV 475 (789)
Q Consensus 453 ~Dg~~l~~~~~~~~~~~l~~~dl 475 (789)
|++. ++|++...+....|.+..
T Consensus 323 p~sG-m~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 323 PGSG-MFFTANESSKMHTYYIPS 344 (703)
T ss_pred cCCc-eEEEecCCCcceeEEccc
Confidence 8876 778888777776666653
No 422
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=94.98 E-value=0.86 Score=47.26 Aligned_cols=160 Identities=13% Similarity=0.141 Sum_probs=92.9
Q ss_pred ceeeC-CcccccCCccCceEEEEEccCCceEecc-C-CCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccC
Q 003886 257 GDWEE-DWGETYAGKRQPSLFVININSGEVQAVK-G-IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNR 333 (789)
Q Consensus 257 ~~~~~-d~g~~~~~~~~~~l~v~d~~~g~~~~l~-~-~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~ 333 (789)
..|++ .-|..+++.....|++|...+|....=. + +....++....|||..+. +++.+.-
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~----vfaScS~-------------- 278 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG----VFASCSC-------------- 278 (440)
T ss_pred eecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc----eEEeeec--------------
Confidence 34554 1245666777788999998887643211 0 223457889999999998 6665521
Q ss_pred CcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCC
Q 003886 334 PCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (789)
Q Consensus 334 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~ 413 (789)
+..|.++|++..+ ...+.....+.+.+.-.+|+-+-..||+-..+ ..+.+||+..
T Consensus 279 DgsIrIWDiRs~~--------------~~~~~~~kAh~sDVNVISWnr~~~lLasG~Dd-----------Gt~~iwDLR~ 333 (440)
T KOG0302|consen 279 DGSIRIWDIRSGP--------------KKAAVSTKAHNSDVNVISWNRREPLLASGGDD-----------GTLSIWDLRQ 333 (440)
T ss_pred CceEEEEEecCCC--------------ccceeEeeccCCceeeEEccCCcceeeecCCC-----------ceEEEEEhhh
Confidence 2256677763210 11222224455677788998877756554433 2488888854
Q ss_pred CCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEEC
Q 003886 414 NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 475 (789)
Q Consensus 414 ~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl 475 (789)
=.. + ..+..+.. +...+..+.|+|....++..+..+....||-+.+
T Consensus 334 ~~~-----~--~pVA~fk~---------Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 334 FKS-----G--QPVATFKY---------HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred ccC-----C--CcceeEEe---------ccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 211 1 01111110 1123567889997777777766666677776554
No 423
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=94.94 E-value=0.56 Score=51.44 Aligned_cols=184 Identities=15% Similarity=0.147 Sum_probs=96.3
Q ss_pred CceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccc--h-
Q 003886 272 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS--E- 348 (789)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~--~- 348 (789)
...|.+|.+.||...+. +.-+..+..++|.|.++.. |+.++.... +++++...+.. .
T Consensus 421 DGtvriWEi~TgRcvr~--~~~d~~I~~vaw~P~~~~~---vLAvA~~~~---------------~~ivnp~~G~~~e~~ 480 (733)
T KOG0650|consen 421 DGTVRIWEIATGRCVRT--VQFDSEIRSVAWNPLSDLC---VLAVAVGEC---------------VLIVNPIFGDRLEVG 480 (733)
T ss_pred CCcEEEEEeecceEEEE--EeecceeEEEEecCCCCce---eEEEEecCc---------------eEEeCccccchhhhc
Confidence 46788899999865444 3445577899999999862 555553221 33333211100 0
Q ss_pred -hhhhhhhc-------C-----------CCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEe
Q 003886 349 -ASELELKE-------S-----------SSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRI 409 (789)
Q Consensus 349 -~~~~~~~~-------~-----------~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~ 409 (789)
...++... + ....+ ++....+...+.+..|.-+|.+|+.+...+ +..++++.
T Consensus 481 ~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~-v~~~I~~~k~i~~vtWHrkGDYlatV~~~~--------~~~~VliH 551 (733)
T KOG0650|consen 481 PTKELLASAPNESEPDAAVVTWSRASLDELEKG-VCIVIKHPKSIRQVTWHRKGDYLATVMPDS--------GNKSVLIH 551 (733)
T ss_pred chhhhhhcCCCccCCcccceeechhhhhhhccc-eEEEEecCCccceeeeecCCceEEEeccCC--------CcceEEEE
Confidence 00000000 0 00111 122223344688899999999999888664 34568888
Q ss_pred ecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEE-ecCCCC
Q 003886 410 DWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR-ITPAES 488 (789)
Q Consensus 410 d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~-lt~~~~ 488 (789)
++...... ...... . ..+....|.|-..++++.+ ...+-.+|+..+++.. +..+--
T Consensus 552 QLSK~~sQ-~PF~ks--------------k----G~vq~v~FHPs~p~lfVaT----q~~vRiYdL~kqelvKkL~tg~k 608 (733)
T KOG0650|consen 552 QLSKRKSQ-SPFRKS--------------K----GLVQRVKFHPSKPYLFVAT----QRSVRIYDLSKQELVKKLLTGSK 608 (733)
T ss_pred eccccccc-Cchhhc--------------C----CceeEEEecCCCceEEEEe----ccceEEEehhHHHHHHHHhcCCe
Confidence 87543321 110000 0 0123445777777776654 2335556775554432 222222
Q ss_pred CceeEEeeecCCEEEEEEe
Q 003886 489 NFSWSLLTLDGDNIIAVSS 507 (789)
Q Consensus 489 ~~~~~~~s~dg~~l~~~~s 507 (789)
.++..++++.|+.|+...-
T Consensus 609 wiS~msihp~GDnli~gs~ 627 (733)
T KOG0650|consen 609 WISSMSIHPNGDNLILGSY 627 (733)
T ss_pred eeeeeeecCCCCeEEEecC
Confidence 3455567778888766543
No 424
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=94.92 E-value=4.3 Score=41.41 Aligned_cols=82 Identities=18% Similarity=0.183 Sum_probs=47.7
Q ss_pred ceEEEEEccCCce-EeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhh
Q 003886 273 PSLFVININSGEV-QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (789)
Q Consensus 273 ~~l~v~d~~~g~~-~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (789)
.+|.+|+...=+. ..++ +....+..++..|.|| |+..-. ++..|..+|+-.+
T Consensus 107 G~i~iw~~~~W~~~~slK--~H~~~Vt~lsiHPS~K-----LALsVg--------------~D~~lr~WNLV~G------ 159 (362)
T KOG0294|consen 107 GHIIIWRVGSWELLKSLK--AHKGQVTDLSIHPSGK-----LALSVG--------------GDQVLRTWNLVRG------ 159 (362)
T ss_pred CcEEEEEcCCeEEeeeec--ccccccceeEecCCCc-----eEEEEc--------------CCceeeeehhhcC------
Confidence 5677787654322 2232 2233588999999999 454331 2335777777210
Q ss_pred hhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecC
Q 003886 352 LELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (789)
Q Consensus 352 ~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~ 392 (789)
..+.+.+|.. ......|+|.|.+++....+
T Consensus 160 --------r~a~v~~L~~---~at~v~w~~~Gd~F~v~~~~ 189 (362)
T KOG0294|consen 160 --------RVAFVLNLKN---KATLVSWSPQGDHFVVSGRN 189 (362)
T ss_pred --------ccceeeccCC---cceeeEEcCCCCEEEEEecc
Confidence 2223344432 34569999999988766644
No 425
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=94.90 E-value=0.074 Score=53.01 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=18.6
Q ss_pred CccEEEEEcCccHHHHHHHHHh
Q 003886 670 PSKVTVVGGSHGGFLTTHLIGQ 691 (789)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~~~~ 691 (789)
..+|.++|||+||.++-.++..
T Consensus 77 ~~~IsfIgHSLGGli~r~al~~ 98 (217)
T PF05057_consen 77 IRKISFIGHSLGGLIARYALGL 98 (217)
T ss_pred cccceEEEecccHHHHHHHHHH
Confidence 3689999999999999877763
No 426
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=94.87 E-value=1.1 Score=47.80 Aligned_cols=63 Identities=14% Similarity=0.239 Sum_probs=38.0
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~ 230 (789)
..+...+.||||++||+.. ..+.+.|| .+.+..+.+. +..+.| .++.|--.-..|+..+.+..
T Consensus 203 keil~~avS~Dgkylatgg-----~d~~v~Iw~~~t~ehv~~~~---ghr~~V------~~L~fr~gt~~lys~s~Drs 267 (479)
T KOG0299|consen 203 KEILTLAVSSDGKYLATGG-----RDRHVQIWDCDTLEHVKVFK---GHRGAV------SSLAFRKGTSELYSASADRS 267 (479)
T ss_pred ceeEEEEEcCCCcEEEecC-----CCceEEEecCcccchhhccc---ccccce------eeeeeecCccceeeeecCCc
Confidence 3477899999999999853 33577888 3444444422 333444 55665554445555555543
No 427
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.77 E-value=0.73 Score=52.95 Aligned_cols=206 Identities=10% Similarity=0.004 Sum_probs=125.1
Q ss_pred cceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccC
Q 003886 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (789)
Q Consensus 211 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (789)
.+++|.|..-+|+..-.....+ .|+-........+.++...+....|.+.----.++..+..|-||+-.+.+..--
T Consensus 13 KglsFHP~rPwILtslHsG~IQ--lWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclft-- 88 (1202)
T KOG0292|consen 13 KGLSFHPKRPWILTSLHSGVIQ--LWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFT-- 88 (1202)
T ss_pred cceecCCCCCEEEEeecCceee--eehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhh--
Confidence 6899999999998776555444 343222223333444444444444554421112333457788998876654321
Q ss_pred CCCC-CccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCC
Q 003886 291 IPKS-LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE 369 (789)
Q Consensus 291 ~~~~-~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~ 369 (789)
.-++ ..+..+.|.+.=.| |+..++ +..|.+++-. ....+..||+
T Consensus 89 L~GHlDYVRt~~FHheyPW----IlSASD---------------DQTIrIWNwq----------------sr~~iavltG 133 (1202)
T KOG0292|consen 89 LLGHLDYVRTVFFHHEYPW----ILSASD---------------DQTIRIWNWQ----------------SRKCIAVLTG 133 (1202)
T ss_pred hccccceeEEeeccCCCce----EEEccC---------------CCeEEEEecc----------------CCceEEEEec
Confidence 2233 36778889888777 877763 2356677751 3344568899
Q ss_pred CCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccc-e-----------------eeEEeeee
Q 003886 370 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK-I-----------------VDVIPVVQ 431 (789)
Q Consensus 370 ~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~-~-----------------~~v~~~~~ 431 (789)
+...+-..+|.|--..|+..|-+. .+.+||..+-.++....+ . +.++..+
T Consensus 134 HnHYVMcAqFhptEDlIVSaSLDQ-----------TVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~V- 201 (1202)
T KOG0292|consen 134 HNHYVMCAQFHPTEDLIVSASLDQ-----------TVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHV- 201 (1202)
T ss_pred CceEEEeeccCCccceEEEecccc-----------eEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeee-
Confidence 999888999999878888777654 488899865443333222 0 1111111
Q ss_pred ccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEEC
Q 003886 432 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 475 (789)
Q Consensus 432 ~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl 475 (789)
..| +++++...+|.|--- |++++.++....||+++-
T Consensus 202 ------LEG-HDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmne 237 (1202)
T KOG0292|consen 202 ------LEG-HDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNE 237 (1202)
T ss_pred ------ecc-cccccceEEecCCcc-eEEecCCcceeeEEEecc
Confidence 111 345566667777654 778887777889999984
No 428
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=94.70 E-value=0.17 Score=65.26 Aligned_cols=100 Identities=12% Similarity=0.120 Sum_probs=65.3
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCc
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (789)
.|.++++||.+++ ...|......|. .++.|+.++.+|. +... .....++++.+.+...+... ....
T Consensus 1068 ~~~l~~lh~~~g~--~~~~~~l~~~l~-~~~~v~~~~~~g~---~~~~-------~~~~~l~~la~~~~~~i~~~-~~~~ 1133 (1296)
T PRK10252 1068 GPTLFCFHPASGF--AWQFSVLSRYLD-PQWSIYGIQSPRP---DGPM-------QTATSLDEVCEAHLATLLEQ-QPHG 1133 (1296)
T ss_pred CCCeEEecCCCCc--hHHHHHHHHhcC-CCCcEEEEECCCC---CCCC-------CCCCCHHHHHHHHHHHHHhh-CCCC
Confidence 3668899997764 446666666663 4699999998873 3211 01224555555444333321 1235
Q ss_pred cEEEEEcCccHHHHHHHHHh---CCCceeEEEEeCCc
Q 003886 672 KVTVVGGSHGGFLTTHLIGQ---APDKFVAAAARNPL 705 (789)
Q Consensus 672 rv~l~G~S~GG~~a~~~~~~---~p~~~~a~v~~~pv 705 (789)
++.++|||+||.++..++.+ .++++..+++..+.
T Consensus 1134 p~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~l~l~~~~ 1170 (1296)
T PRK10252 1134 PYHLLGYSLGGTLAQGIAARLRARGEEVAFLGLLDTW 1170 (1296)
T ss_pred CEEEEEechhhHHHHHHHHHHHHcCCceeEEEEecCC
Confidence 79999999999999999885 46788888877653
No 429
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.58 E-value=0.28 Score=54.16 Aligned_cols=129 Identities=16% Similarity=0.205 Sum_probs=58.7
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~ 235 (789)
....++||+|+.++...+++ |.+......+..... .+ ..+.|+++++ .|...... ....
T Consensus 35 p~~ls~npngr~v~V~g~ge------Y~iyt~~~~r~k~~G-~g-----------~~~vw~~~n~-yAv~~~~~--~I~I 93 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLVCGDGE------YEIYTALAWRNKAFG-SG-----------LSFVWSSRNR-YAVLESSS--TIKI 93 (443)
T ss_dssp -SEEEE-TTSSEEEEEETTE------EEEEETTTTEEEEEE-E------------SEEEE-TSSE-EEEE-TTS---EEE
T ss_pred CeeEEECCCCCEEEEEcCCE------EEEEEccCCcccccC-ce-----------eEEEEecCcc-EEEEECCC--eEEE
Confidence 56788999999999854443 666642222222221 12 4688999666 33332111 1111
Q ss_pred ccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEE
Q 003886 236 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVF 315 (789)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f 315 (789)
+........+.. .........|. |..+.-.....|..+|.++++..+- +.-. .+..+.||+||+. +++
T Consensus 94 ~kn~~~~~~k~i--~~~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~--i~v~-~vk~V~Ws~~g~~----val 161 (443)
T PF04053_consen 94 YKNFKNEVVKSI--KLPFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRR--IDVS-AVKYVIWSDDGEL----VAL 161 (443)
T ss_dssp EETTEE-TT-------SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEE--ESS--E-EEEEE-TTSSE----EEE
T ss_pred EEcCccccceEE--cCCcccceEEc---CcEEEEECCCCEEEEEhhHcceeeE--EecC-CCcEEEEECCCCE----EEE
Confidence 110000000000 00111122333 4444444455699999998875443 1211 2579999999998 888
Q ss_pred Ee
Q 003886 316 VG 317 (789)
Q Consensus 316 ~~ 317 (789)
++
T Consensus 162 ~t 163 (443)
T PF04053_consen 162 VT 163 (443)
T ss_dssp E-
T ss_pred Ee
Confidence 87
No 430
>KOG4328 consensus WD40 protein [Function unknown]
Probab=94.52 E-value=0.63 Score=49.39 Aligned_cols=173 Identities=13% Similarity=0.072 Sum_probs=98.9
Q ss_pred cCceEEEEEccCCc---eEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccc
Q 003886 271 RQPSLFVININSGE---VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 347 (789)
Q Consensus 271 ~~~~l~v~d~~~g~---~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 347 (789)
+..+|-+||+.+.+ ......++....++...|+|.... -++.+. -+..|...|+
T Consensus 208 K~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s----~i~ssS--------------yDGtiR~~D~----- 264 (498)
T KOG4328|consen 208 KGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTS----QIYSSS--------------YDGTIRLQDF----- 264 (498)
T ss_pred CCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChh----heeeec--------------cCceeeeeee-----
Confidence 34678888885322 222223566678889999997765 444431 1236778887
Q ss_pred hhhhhhhhcCCCCCCCeee-cCC--CCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCC--Ccccc
Q 003886 348 EASELELKESSSEDLPVVN-LTE--SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF--SSLEK 422 (789)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~-Lt~--~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~--~~t~~ 422 (789)
+++..+. ++. .........|+.+..-++|..+-+ .+.++|+.+++.. .+...
T Consensus 265 ------------~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G-----------~f~~iD~R~~~s~~~~~~lh 321 (498)
T KOG4328|consen 265 ------------EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG-----------NFNVIDLRTDGSEYENLRLH 321 (498)
T ss_pred ------------cchhhHHHhhcCccceeeeeccccCCCccEEEeeccc-----------ceEEEEeecCCccchhhhhh
Confidence 4443322 222 334466677888877777766432 4777887776542 11111
Q ss_pred eeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEE-Ee-cCCC-CCceeEEeeecC
Q 003886 423 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL-RI-TPAE-SNFSWSLLTLDG 499 (789)
Q Consensus 423 ~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~-~l-t~~~-~~~~~~~~s~dg 499 (789)
. .-+..+.+.|--.+++.++..+....||-+.--.++.. .| +-.+ -.+....|||++
T Consensus 322 ~--------------------kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~ 381 (498)
T KOG4328|consen 322 K--------------------KKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG 381 (498)
T ss_pred h--------------------cccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC
Confidence 1 12334556666667777777777777885543233332 12 1112 134456799999
Q ss_pred CEEEEEEeCC
Q 003886 500 DNIIAVSSSP 509 (789)
Q Consensus 500 ~~l~~~~ss~ 509 (789)
..|+.++.+.
T Consensus 382 gtl~TT~~D~ 391 (498)
T KOG4328|consen 382 GTLLTTCQDN 391 (498)
T ss_pred CceEeeccCC
Confidence 8877776543
No 431
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=94.47 E-value=1.7 Score=45.27 Aligned_cols=117 Identities=16% Similarity=0.192 Sum_probs=73.9
Q ss_pred cceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceE-ecc
Q 003886 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ-AVK 289 (789)
Q Consensus 211 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~-~l~ 289 (789)
.++.|||-.+.+++.+.- +..|.+||+..+.-. .+.
T Consensus 261 EDLqWSptE~~vfaScS~-------------------------------------------DgsIrIWDiRs~~~~~~~~ 297 (440)
T KOG0302|consen 261 EDLQWSPTEDGVFASCSC-------------------------------------------DGSIRIWDIRSGPKKAAVS 297 (440)
T ss_pred hhhccCCccCceEEeeec-------------------------------------------CceEEEEEecCCCccceeE
Confidence 899999999888776442 357888888776321 111
Q ss_pred CCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCC-CeeecC
Q 003886 290 GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLT 368 (789)
Q Consensus 290 ~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~Lt 368 (789)
-...+..+.-+.|+-+-.. |++.++ +..+-++|++.- ..+ .+-...
T Consensus 298 ~kAh~sDVNVISWnr~~~l----LasG~D---------------dGt~~iwDLR~~--------------~~~~pVA~fk 344 (440)
T KOG0302|consen 298 TKAHNSDVNVISWNRREPL----LASGGD---------------DGTLSIWDLRQF--------------KSGQPVATFK 344 (440)
T ss_pred eeccCCceeeEEccCCcce----eeecCC---------------CceEEEEEhhhc--------------cCCCcceeEE
Confidence 0122335667788887765 776652 235666776311 222 344566
Q ss_pred CCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCC
Q 003886 369 ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (789)
Q Consensus 369 ~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~ 413 (789)
.+...+++..|+|.-..++-.+.. .++|-+||+..
T Consensus 345 ~Hk~pItsieW~p~e~s~iaasg~----------D~QitiWDlsv 379 (440)
T KOG0302|consen 345 YHKAPITSIEWHPHEDSVIAASGE----------DNQITIWDLSV 379 (440)
T ss_pred eccCCeeEEEeccccCceEEeccC----------CCcEEEEEeec
Confidence 677889999999976665544433 35788888754
No 432
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=94.41 E-value=0.94 Score=46.04 Aligned_cols=65 Identities=20% Similarity=0.236 Sum_probs=42.8
Q ss_pred CCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCC---CeeecC
Q 003886 292 PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL---PVVNLT 368 (789)
Q Consensus 292 ~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~Lt 368 (789)
..+..+..+.|+|-+.+ |+-.+.+ |+..+|... .++ ..-.|-
T Consensus 53 ~Hd~~vtgvdWap~snr----Ivtcs~d-------------rnayVw~~~------------------~~~~WkptlvLl 97 (361)
T KOG1523|consen 53 EHDKIVTGVDWAPKSNR----IVTCSHD-------------RNAYVWTQP------------------SGGTWKPTLVLL 97 (361)
T ss_pred hhCcceeEEeecCCCCc----eeEccCC-------------CCccccccC------------------CCCeeccceeEE
Confidence 34556778999999999 8887732 223344331 122 222344
Q ss_pred CCCCccCcceecCCCCEEEEEec
Q 003886 369 ESISSAFFPRFSPDGKFLVFLSA 391 (789)
Q Consensus 369 ~~~~~~~~p~~SpDG~~la~~s~ 391 (789)
..++.+....|||.++++|..+.
T Consensus 98 RiNrAAt~V~WsP~enkFAVgSg 120 (361)
T KOG1523|consen 98 RINRAATCVKWSPKENKFAVGSG 120 (361)
T ss_pred EeccceeeEeecCcCceEEeccC
Confidence 45677899999999999887663
No 433
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.29 E-value=0.17 Score=56.53 Aligned_cols=176 Identities=13% Similarity=0.083 Sum_probs=96.0
Q ss_pred eEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCC-
Q 003886 110 QAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS- 188 (789)
Q Consensus 110 ~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~- 188 (789)
.|.|...+.-++++...+.|.+|++.. ....+.|+... .....+.|+|-|.+.|--+... =|.+|+..
T Consensus 75 Sl~f~~~E~LlaagsasgtiK~wDlee-Ak~vrtLtgh~-----~~~~sv~f~P~~~~~a~gStdt-----d~~iwD~Rk 143 (825)
T KOG0267|consen 75 SLTFDTSERLLAAGSASGTIKVWDLEE-AKIVRTLTGHL-----LNITSVDFHPYGEFFASGSTDT-----DLKIWDIRK 143 (825)
T ss_pred eeecCcchhhhcccccCCceeeeehhh-hhhhhhhhccc-----cCcceeeeccceEEeccccccc-----cceehhhhc
Confidence 355555666677777788899998842 23334555443 3455677999999875433221 25566422
Q ss_pred -ceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCccccc
Q 003886 189 -QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY 267 (789)
Q Consensus 189 -~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~ 267 (789)
....... +..+.+ ..+.++|||++++-..++...+ .|+...++..+.++.+..-....+|.|.---+.
T Consensus 144 ~Gc~~~~~---s~~~vv------~~l~lsP~Gr~v~~g~ed~tvk--i~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla 212 (825)
T KOG0267|consen 144 KGCSHTYK---SHTRVV------DVLRLSPDGRWVASGGEDNTVK--IWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLA 212 (825)
T ss_pred cCceeeec---CCccee------EEEeecCCCceeeccCCcceee--eecccccccccccccccccccccccCchhhhhc
Confidence 1111111 111112 6789999999999877755433 444333333322232222222222333211222
Q ss_pred CCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCC
Q 003886 268 AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 308 (789)
Q Consensus 268 ~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~ 308 (789)
.+..+..+-.||+++-++..-. -+....+....|.|||+.
T Consensus 213 ~Gs~d~tv~f~dletfe~I~s~-~~~~~~v~~~~fn~~~~~ 252 (825)
T KOG0267|consen 213 PGSSDRTVRFWDLETFEVISSG-KPETDGVRSLAFNPDGKI 252 (825)
T ss_pred cCCCCceeeeeccceeEEeecc-CCccCCceeeeecCCcee
Confidence 3445677888998765443221 222446778899999984
No 434
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=94.26 E-value=1.3 Score=45.16 Aligned_cols=96 Identities=16% Similarity=0.108 Sum_probs=66.5
Q ss_pred cCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhh
Q 003886 271 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (789)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (789)
....|+++|+.+++...-. ......+....+.|+-.. |+..+..+ ..|.++++
T Consensus 113 ~~GvIrVid~~~~~~~~~~-~ghG~sINeik~~p~~~q----lvls~SkD--------------~svRlwnI-------- 165 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNY-RGHGGSINEIKFHPDRPQ----LVLSASKD--------------HSVRLWNI-------- 165 (385)
T ss_pred ceeEEEEEecchhhhccce-eccCccchhhhcCCCCCc----EEEEecCC--------------ceEEEEec--------
Confidence 4578999999988754321 233446778899999888 77766332 25667776
Q ss_pred hhhhhcCCCCCCCeeecCC----CCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCC
Q 003886 351 ELELKESSSEDLPVVNLTE----SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (789)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~----~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~ 413 (789)
.+..+..+.. +.+.+.+..||+||.+|+...++. +|.+|+++.
T Consensus 166 ---------~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDh-----------slk~W~l~~ 212 (385)
T KOG1034|consen 166 ---------QTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDH-----------SLKLWRLNV 212 (385)
T ss_pred ---------cCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcc-----------eEEEEecCh
Confidence 5555555543 355688999999999988776654 577777764
No 435
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=94.18 E-value=1.8 Score=45.87 Aligned_cols=146 Identities=10% Similarity=0.070 Sum_probs=86.3
Q ss_pred cCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhh
Q 003886 271 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (789)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (789)
.+..|.+||+++|++.... ......+..+.|.|-.-. +...+. ....+.+.|++.-
T Consensus 264 aD~TV~lWD~~~g~p~~s~-~~~~k~Vq~l~wh~~~p~----~LLsGs--------------~D~~V~l~D~R~~----- 319 (463)
T KOG0270|consen 264 ADKTVKLWDVDTGKPKSSI-THHGKKVQTLEWHPYEPS----VLLSGS--------------YDGTVALKDCRDP----- 319 (463)
T ss_pred CCceEEEEEcCCCCcceeh-hhcCCceeEEEecCCCce----EEEecc--------------ccceEEeeeccCc-----
Confidence 4578999999999988773 224457889999998776 555552 2234556665310
Q ss_pred hhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeee
Q 003886 351 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 430 (789)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~ 430 (789)
...+..-.. .+.+...+|.|-....+|++.++ ..||-+|....+.-. +.+.
T Consensus 320 --------~~s~~~wk~---~g~VEkv~w~~~se~~f~~~tdd----------G~v~~~D~R~~~~~v-----wt~~--- 370 (463)
T KOG0270|consen 320 --------SNSGKEWKF---DGEVEKVAWDPHSENSFFVSTDD----------GTVYYFDIRNPGKPV-----WTLK--- 370 (463)
T ss_pred --------cccCceEEe---ccceEEEEecCCCceeEEEecCC----------ceEEeeecCCCCCce-----eEEE---
Confidence 011111111 33466677887777666776554 258888876644211 1110
Q ss_pred eccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCc
Q 003886 431 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 479 (789)
Q Consensus 431 ~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~ 479 (789)
. +...+..+++++.-..++.++.......||.++...++
T Consensus 371 A----------Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~ 409 (463)
T KOG0270|consen 371 A----------HDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK 409 (463)
T ss_pred e----------ccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc
Confidence 0 11235556666655667667666677788888765543
No 436
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=94.02 E-value=0.2 Score=54.82 Aligned_cols=82 Identities=17% Similarity=0.237 Sum_probs=55.9
Q ss_pred hhHHHHHHHHHCCcEE-----EE-EcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccH
Q 003886 609 SYSKSLAFLSSVGYSL-----LI-VNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGG 682 (789)
Q Consensus 609 ~~~~~~~~la~~Gy~V-----~~-~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG 682 (789)
.|...++.|.+.||.. .+ +|.|-+.. ....-...+.+.|+.+.+. ...+|.|+||||||
T Consensus 66 ~~~~li~~L~~~GY~~~~~l~~~pYDWR~~~~------------~~~~~~~~lk~~ie~~~~~---~~~kv~li~HSmGg 130 (389)
T PF02450_consen 66 YFAKLIENLEKLGYDRGKDLFAAPYDWRLSPA------------ERDEYFTKLKQLIEEAYKK---NGKKVVLIAHSMGG 130 (389)
T ss_pred hHHHHHHHHHhcCcccCCEEEEEeechhhchh------------hHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCCCc
Confidence 5777888999988753 23 67764322 0011244556666666554 26899999999999
Q ss_pred HHHHHHHHhCCC------ceeEEEEeCCc
Q 003886 683 FLTTHLIGQAPD------KFVAAAARNPL 705 (789)
Q Consensus 683 ~~a~~~~~~~p~------~~~a~v~~~pv 705 (789)
.++..++...+. .+++.|..++.
T Consensus 131 l~~~~fl~~~~~~~W~~~~i~~~i~i~~p 159 (389)
T PF02450_consen 131 LVARYFLQWMPQEEWKDKYIKRFISIGTP 159 (389)
T ss_pred hHHHHHHHhccchhhHHhhhhEEEEeCCC
Confidence 999998876642 47888888764
No 437
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=93.89 E-value=7.3 Score=44.37 Aligned_cols=229 Identities=16% Similarity=0.083 Sum_probs=117.9
Q ss_pred cceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccC
Q 003886 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (789)
Q Consensus 211 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (789)
.++.+..-+.+|+-.+.+++.+ .|+...+........+..-.. .....-.....+..+..|.||++++++...+.
T Consensus 253 ~~l~~~~~~~~lvsgS~D~t~r--vWd~~sg~C~~~l~gh~stv~--~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~- 327 (537)
T KOG0274|consen 253 WGLAFPSGGDKLVSGSTDKTER--VWDCSTGECTHSLQGHTSSVR--CLTIDPFLLVSGSRDNTVKVWDVTNGACLNLL- 327 (537)
T ss_pred eeEEEecCCCEEEEEecCCcEE--eEecCCCcEEEEecCCCceEE--EEEccCceEeeccCCceEEEEeccCcceEEEe-
Confidence 6777776566666666676654 344333333333322221111 01111011223457789999999999887773
Q ss_pred CC-CCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeecC
Q 003886 291 IP-KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLT 368 (789)
Q Consensus 291 ~~-~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt 368 (789)
. ....+..+... +.. ++..+. ...|-++|+ .+++ .+.|+
T Consensus 328 -~~h~~~V~~v~~~--~~~----lvsgs~---------------d~~v~VW~~-----------------~~~~cl~sl~ 368 (537)
T KOG0274|consen 328 -RGHTGPVNCVQLD--EPL----LVSGSY---------------DGTVKVWDP-----------------RTGKCLKSLS 368 (537)
T ss_pred -ccccccEEEEEec--CCE----EEEEec---------------CceEEEEEh-----------------hhceeeeeec
Confidence 3 33455555555 443 444441 124666676 3333 56777
Q ss_pred CCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCC-CCCCcccceeeEEeeeeccCCCCCccccccCCC
Q 003886 369 ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN-GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSIL 447 (789)
Q Consensus 369 ~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~-~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~ 447 (789)
.+.+.+....+.+. +.++-.+.+ ..|.+||+.+. +-.....+...++.
T Consensus 369 gH~~~V~sl~~~~~-~~~~Sgs~D-----------~~IkvWdl~~~~~c~~tl~~h~~~v~------------------- 417 (537)
T KOG0274|consen 369 GHTGRVYSLIVDSE-NRLLSGSLD-----------TTIKVWDLRTKRKCIHTLQGHTSLVS------------------- 417 (537)
T ss_pred CCcceEEEEEecCc-ceEEeeeec-----------cceEeecCCchhhhhhhhcCCccccc-------------------
Confidence 77777776665443 555555544 35899999886 22221112211111
Q ss_pred CCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 448 SNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 448 ~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
.....++ ++.+...++...+| |..+++..+............+.. ++..++.++.... +.+.|+..+
T Consensus 418 --~l~~~~~-~Lvs~~aD~~Ik~W--D~~~~~~~~~~~~~~~~~v~~l~~-~~~~il~s~~~~~---~~l~dl~~~ 484 (537)
T KOG0274|consen 418 --SLLLRDN-FLVSSSADGTIKLW--DAEEGECLRTLEGRHVGGVSALAL-GKEEILCSSDDGS---VKLWDLRSG 484 (537)
T ss_pred --ccccccc-eeEeccccccEEEe--ecccCceeeeeccCCcccEEEeec-CcceEEEEecCCe---eEEEecccC
Confidence 1122344 44565556656666 777888877766631112222222 2455555555444 344465544
No 438
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.82 E-value=3.3 Score=45.66 Aligned_cols=100 Identities=20% Similarity=0.204 Sum_probs=62.3
Q ss_pred CccCceEEEEEccCCceEeccCCCC-CCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccc
Q 003886 269 GKRQPSLFVININSGEVQAVKGIPK-SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 347 (789)
Q Consensus 269 ~~~~~~l~v~d~~~g~~~~l~~~~~-~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 347 (789)
+.....++++++.+|++..-..+.. ...+....|+.+-.. |+.++ ....+..++.
T Consensus 76 gt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~c----iyS~~---------------ad~~v~~~~~----- 131 (541)
T KOG4547|consen 76 GTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGC----IYSVG---------------ADLKVVYILE----- 131 (541)
T ss_pred ecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCc----eEecC---------------CceeEEEEec-----
Confidence 3356789999999998865421122 224555566666554 44444 2235556665
Q ss_pred hhhhhhhhcCCCCCCCeeecCC-CCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCC
Q 003886 348 EASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 417 (789)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~Lt~-~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~ 417 (789)
......+... ......+...||||+.|+..+ .+|.++|.++++..
T Consensus 132 ------------~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as-------------~~ik~~~~~~kevv 177 (541)
T KOG4547|consen 132 ------------KEKVIIRIWKEQKPLVSSLCISPDGKILLTAS-------------RQIKVLDIETKEVV 177 (541)
T ss_pred ------------ccceeeeeeccCCCccceEEEcCCCCEEEecc-------------ceEEEEEccCceEE
Confidence 4444444432 234577889999999987655 25999999886653
No 439
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.71 E-value=0.74 Score=51.02 Aligned_cols=168 Identities=16% Similarity=0.150 Sum_probs=81.9
Q ss_pred cCCCCCCCcceeeCCcccccCCccCceEEEEEccCCc---eEeccCCCCCCccceEEE-eeCCCCCccEEEEEeecCCce
Q 003886 248 KDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE---VQAVKGIPKSLSVGQVVW-APLNEGLHQYLVFVGWSSETR 323 (789)
Q Consensus 248 ~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~---~~~l~~~~~~~~~~~~~w-SPDg~~~~~~l~f~~~~~~~~ 323 (789)
..+..|..+...--+....++...+..+.+|+...+. ...| -....++..++. .++.. ++..+
T Consensus 70 e~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~sti--r~H~DYVkcla~~ak~~~-----lvaSg------ 136 (735)
T KOG0308|consen 70 EHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTI--RTHKDYVKCLAYIAKNNE-----LVASG------ 136 (735)
T ss_pred hhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhh--hcccchheeeeecccCce-----eEEec------
Confidence 3455666554444443334445567789999987653 1222 112234555566 55544 33333
Q ss_pred eeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecC-CCCCccCcceecCCCCEEEEEecCCCCCCCCccc
Q 003886 324 KLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 402 (789)
Q Consensus 324 ~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt-~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~ 402 (789)
| -...|+++|+..+... + ....+......|. +...++.+.+-.+.|..| ++.. .
T Consensus 137 --G------LD~~IflWDin~~~~~---l---~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~i--vsGg---------t 191 (735)
T KOG0308|consen 137 --G------LDRKIFLWDINTGTAT---L---VASFNNVTVNSLGSGPKDSIYSLAMNQTGTII--VSGG---------T 191 (735)
T ss_pred --C------CCccEEEEEccCcchh---h---hhhccccccccCCCCCccceeeeecCCcceEE--EecC---------c
Confidence 1 2236788887211000 0 0000011111122 223345555666666332 2211 2
Q ss_pred cceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003886 403 TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (789)
Q Consensus 403 ~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~ 473 (789)
...|.+||..+..+.-...+..+ ++..+..++||+++ ++++.+|..+||.+
T Consensus 192 ek~lr~wDprt~~kimkLrGHTd-------------------NVr~ll~~dDGt~~-ls~sSDgtIrlWdL 242 (735)
T KOG0308|consen 192 EKDLRLWDPRTCKKIMKLRGHTD-------------------NVRVLLVNDDGTRL-LSASSDGTIRLWDL 242 (735)
T ss_pred ccceEEeccccccceeeeecccc-------------------ceEEEEEcCCCCeE-eecCCCceEEeeec
Confidence 34699999888665322223322 23344567899877 56666777888754
No 440
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=93.70 E-value=8.3 Score=41.51 Aligned_cols=143 Identities=18% Similarity=0.240 Sum_probs=74.0
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhh
Q 003886 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (789)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (789)
..+.+|++..++..... ......+..+.|+|+++. ++..... ...|..+|.
T Consensus 178 ~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~----~~~~~~~--------------d~~i~~wd~---------- 228 (466)
T COG2319 178 GTIKLWDLRTGKPLSTL-AGHTDPVSSLAFSPDGGL----LIASGSS--------------DGTIRLWDL---------- 228 (466)
T ss_pred CceEEEEcCCCceEEee-ccCCCceEEEEEcCCcce----EEEEecC--------------CCcEEEEEC----------
Confidence 56778888765554441 123456778899999984 4444211 113334465
Q ss_pred hhhcCCCCCCCee--ecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeee
Q 003886 353 ELKESSSEDLPVV--NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 430 (789)
Q Consensus 353 ~~~~~~~~~~~~~--~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~ 430 (789)
..+... .+..+.... ...|+|+|+.++..+.. ..+.++|....... +...
T Consensus 229 -------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d-----------~~~~~~~~~~~~~~--------~~~~- 280 (466)
T COG2319 229 -------STGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSD-----------GTIRLWDLRSSSSL--------LRTL- 280 (466)
T ss_pred -------CCCcEEeeecCCCCcce-eEeECCCCCEEEEecCC-----------CcEEEeeecCCCcE--------EEEE-
Confidence 222222 233333322 33899999666633322 35778877654330 0000
Q ss_pred eccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEec
Q 003886 431 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 484 (789)
Q Consensus 431 ~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt 484 (789)
.. . ...+....|.|++..++. ...++...+| +..++......
T Consensus 281 ~~-~--------~~~v~~~~~~~~~~~~~~-~~~d~~~~~~--~~~~~~~~~~~ 322 (466)
T COG2319 281 SG-H--------SSSVLSVAFSPDGKLLAS-GSSDGTVRLW--DLETGKLLSSL 322 (466)
T ss_pred ec-C--------CccEEEEEECCCCCEEEE-eeCCCcEEEE--EcCCCceEEEe
Confidence 00 0 012334478888876766 4444555566 76666544433
No 441
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=93.62 E-value=0.64 Score=47.13 Aligned_cols=180 Identities=13% Similarity=0.105 Sum_probs=86.9
Q ss_pred cEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHH-HHHHHHHcCCCCCc
Q 003886 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLT-AIDHVIDMGLANPS 671 (789)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~-~i~~l~~~~~~d~~ 671 (789)
|+||++ |..++ .........+...++|+.++.+-.+-. .+. +....+....+ .++.+.+...-+..
T Consensus 1 plvvl~-gW~gA-~~~hl~KY~~~Y~~~g~~il~~~~~~~-----~~~------~~~~~~~~~~~~l~~~l~~~~~~~~~ 67 (240)
T PF05705_consen 1 PLVVLL-GWMGA-KPKHLAKYSDLYQDPGFDILLVTSPPA-----DFF------WPSKRLAPAADKLLELLSDSQSASPP 67 (240)
T ss_pred CEEEEE-eCCCC-CHHHHHHHHHHHHhcCCeEEEEeCCHH-----HHe------eeccchHHHHHHHHHHhhhhccCCCC
Confidence 555554 64432 233444556666779999999876421 110 00012222222 33333333222224
Q ss_pred cEEEEEcCccHHHHHHHHHh---C-------CCceeEEEEeCCccchh------hhhcCCCCC--cc-----hhhhh-cc
Q 003886 672 KVTVVGGSHGGFLTTHLIGQ---A-------PDKFVAAAARNPLCNLA------LMVGTTDIP--DW-----CYVES-YG 727 (789)
Q Consensus 672 rv~l~G~S~GG~~a~~~~~~---~-------p~~~~a~v~~~pv~~~~------~~~~~~~~~--~~-----~~~~~-~~ 727 (789)
+|.+-.+|.||......+.. . -.++++.|..+...... .+....... .| ..... +.
T Consensus 68 ~il~H~FSnGG~~~~~~l~~~~~~~~~~~~~~~~i~g~I~DS~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (240)
T PF05705_consen 68 PILFHSFSNGGSFLYSQLLEAYQSRKKFGKLLPRIKGIIFDSCPGIPTYSSSARAFSAALPKSSPRWFVPLWPLLQFLLR 147 (240)
T ss_pred CEEEEEEECchHHHHHHHHHHHHhcccccccccccceeEEeCCCCccccccHHHHHHHHcCccchhhHHHHHHHHHHHHH
Confidence 89999999988877765441 1 12377888776543211 110000000 00 00000 00
Q ss_pred Cc-cccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 728 SK-GKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 728 ~~-~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.. ........+ .....+.+...........+|-|++.+.+|.+||.+..+++.+..++
T Consensus 148 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~lylYS~~D~l~~~~~ve~~~~~~~~ 206 (240)
T PF05705_consen 148 LSIISYFIFGYP--DVQEYYRRALNDFANSPSRCPRLYLYSKADPLIPWRDVEEHAEEARR 206 (240)
T ss_pred HHHHHHHHhcCC--cHHHHHHHHHhhhhcCCCCCCeEEecCCCCcCcCHHHHHHHHHHHHH
Confidence 00 000000111 11111222111122345568999999999999999999988876543
No 442
>PRK13613 lipoprotein LpqB; Provisional
Probab=93.35 E-value=6.3 Score=45.43 Aligned_cols=104 Identities=13% Similarity=0.095 Sum_probs=58.5
Q ss_pred EecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCC----ccceeecCCcceecccEEEEeCCCCCeEEEEecCCC
Q 003886 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENEN----SVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN 176 (789)
Q Consensus 101 ~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~ 176 (789)
.+..|+||..+|+... ....++.-.+.. +.. ...+... .....|+|.++| .|..+ +.+.
T Consensus 367 s~avS~~g~~~A~v~~--------~~~~l~vg~~~~-~~~~~~~~~~~~~~------~~Lt~PS~d~~g-~vWtv-d~~~ 429 (599)
T PRK13613 367 RVAVSRDESRAAGISA--------DGDSVYVGSLTP-GASIGVHSWGVTAD------GRLTSPSWDGRG-DLWVV-DRDP 429 (599)
T ss_pred ceEEcCCCceEEEEcC--------CCcEEEEeccCC-CCccccccceeecc------CcccCCcCcCCC-CEEEe-cCCC
Confidence 3455788888887732 123566544322 222 1122222 246789999999 66554 4433
Q ss_pred CCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeec
Q 003886 177 ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 228 (789)
Q Consensus 177 ~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~ 228 (789)
...+++.+. .+|+... ++.+ ...| ..+..+..|+||.++|.+.+.
T Consensus 430 ~~~~vl~v~~~~G~~~~-V~~~-~l~g-----~~I~~lrvSrDG~RvAvv~~~ 475 (599)
T PRK13613 430 ADPRLLWLLQGDGEPVE-VRTP-ELDG-----HRVVAVRVARDGVRVALIVEK 475 (599)
T ss_pred CCceEEEEEcCCCcEEE-eecc-ccCC-----CEeEEEEECCCccEEEEEEec
Confidence 344444444 5555533 3322 1111 134899999999999998764
No 443
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=93.33 E-value=1.8 Score=46.16 Aligned_cols=39 Identities=13% Similarity=0.232 Sum_probs=29.5
Q ss_pred ceEEEEEccCCceEeccCCCCCC-ccceEEEeeCCCCCccEEEEEe
Q 003886 273 PSLFVININSGEVQAVKGIPKSL-SVGQVVWAPLNEGLHQYLVFVG 317 (789)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~-~~~~~~wSPDg~~~~~~l~f~~ 317 (789)
..||+|.+.+|+...+ ...+. .+.-..||-||+. |+-.+
T Consensus 103 g~lYlWelssG~LL~v--~~aHYQ~ITcL~fs~dgs~----iiTgs 142 (476)
T KOG0646|consen 103 GNLYLWELSSGILLNV--LSAHYQSITCLKFSDDGSH----IITGS 142 (476)
T ss_pred CcEEEEEeccccHHHH--HHhhccceeEEEEeCCCcE----EEecC
Confidence 6799999999987766 34443 6778899999996 55444
No 444
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=93.20 E-value=4.2 Score=45.32 Aligned_cols=37 Identities=11% Similarity=0.205 Sum_probs=25.3
Q ss_pred CceEEEEEccCCceEecc-CCCCCCccceEEEeeCCCC
Q 003886 272 QPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEG 308 (789)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~-~~~~~~~~~~~~wSPDg~~ 308 (789)
+..+..||+++++..-.. -.....++.+.+|.|+...
T Consensus 121 DsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~ 158 (720)
T KOG0321|consen 121 DSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPA 158 (720)
T ss_pred CceeeeeeeccceeecceeecccccccchhhhccCCCc
Confidence 467888999887764331 0233446778999999986
No 445
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=93.03 E-value=0.2 Score=54.52 Aligned_cols=112 Identities=19% Similarity=0.176 Sum_probs=63.8
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHH-----------------HHHHHHHCCcEEEEEcCCCCCCCCch
Q 003886 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-----------------SLAFLSSVGYSLLIVNYRGSLGFGEE 638 (789)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~-----------------~~~~la~~Gy~V~~~d~rGs~G~G~~ 638 (789)
+.+|.+.+++ ...+.|+|+++-|||++........ +..-|.+. -.+|.+|.+=.+||..+
T Consensus 87 ~ffy~fe~~n--dp~~rPvi~wlNGGPGcSS~~g~l~elGP~rI~~~~~P~~~~NP~SW~~~-adLvFiDqPvGTGfS~a 163 (498)
T COG2939 87 FFFYTFESPN--DPANRPVIFWLNGGPGCSSVTGLLGELGPKRIQSGTSPSYPDNPGSWLDF-ADLVFIDQPVGTGFSRA 163 (498)
T ss_pred EEEEEecCCC--CCCCCceEEEecCCCChHhhhhhhhhcCCeeeeCCCCCCCCCCccccccC-CceEEEecCcccCcccc
Confidence 5566666532 5668999999999999743321110 11112222 36788885534788775
Q ss_pred hhccCCCCCCcccHHHHHHHHHHHHHc-CCC--CCccEEEEEcCccHHHHHHHHHh
Q 003886 639 ALQSLPGKVGSQDVNDVLTAIDHVIDM-GLA--NPSKVTVVGGSHGGFLTTHLIGQ 691 (789)
Q Consensus 639 ~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~~--d~~rv~l~G~S~GG~~a~~~~~~ 691 (789)
.......+.. ..-+|+..+.+.+.+. +.. ...+..|+|-||||+-+..+|..
T Consensus 164 ~~~e~~~d~~-~~~~D~~~~~~~f~~~fp~~~r~~~~~~L~GESYgg~yip~~A~~ 218 (498)
T COG2939 164 LGDEKKKDFE-GAGKDVYSFLRLFFDKFPHYARLLSPKFLAGESYGGHYIPVFAHE 218 (498)
T ss_pred cccccccchh-ccchhHHHHHHHHHHHHHHHhhhcCceeEeeccccchhhHHHHHH
Confidence 2222111111 1134555555554442 111 22478999999999988877653
No 446
>PRK13614 lipoprotein LpqB; Provisional
Probab=92.95 E-value=6.4 Score=44.93 Aligned_cols=65 Identities=8% Similarity=-0.008 Sum_probs=37.3
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcee----E--EEecCCCccccccCCCcccceeecCCCCEEEEEeec
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLE----K--EFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 228 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~----~--~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~ 228 (789)
....|+|+++| ++..+.+.+ ...+..+...+... . ....+ ...| ..+..+..|+||.++|.+.+.
T Consensus 384 ~Lt~PS~d~~g-~vWtv~~g~--~~~vv~~~~~g~~~~~~~~~~~v~~~-~l~g-----~~I~~lrvSrDG~R~Avi~~~ 454 (573)
T PRK13614 384 TLTRPSFSPQD-WVWTAGPGG--NGRIVAYRPTGVAEGAQAPTVTLTAD-WLAG-----RTVKELRVSREGVRALVISEQ 454 (573)
T ss_pred CccCCcccCCC-CEEEeeCCC--CceEEEEecCCCcccccccceeeccc-ccCC-----CeeEEEEECCCccEEEEEEEe
Confidence 36789999999 776554432 22455544333211 0 11111 1111 124899999999999998764
No 447
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.88 E-value=6.6 Score=39.48 Aligned_cols=177 Identities=16% Similarity=0.122 Sum_probs=100.2
Q ss_pred cCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhh
Q 003886 271 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (789)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (789)
....|-.+|..+|+++.+. +........+.--|||.. .++- . ...|-++|-
T Consensus 81 g~gaiGhLdP~tGev~~yp-Lg~Ga~Phgiv~gpdg~~-----Witd-~--------------~~aI~R~dp-------- 131 (353)
T COG4257 81 GTGAIGHLDPATGEVETYP-LGSGASPHGIVVGPDGSA-----WITD-T--------------GLAIGRLDP-------- 131 (353)
T ss_pred ccccceecCCCCCceEEEe-cCCCCCCceEEECCCCCe-----eEec-C--------------cceeEEecC--------
Confidence 4567889999999998874 444556677888999975 2221 1 115777775
Q ss_pred hhhhhcCCCCCCCeeec--CCC--CCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeE
Q 003886 351 ELELKESSSEDLPVVNL--TES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 426 (789)
Q Consensus 351 ~~~~~~~~~~~~~~~~L--t~~--~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v 426 (789)
++.+.++. +.. ......+.|.++|. |.|+... |.+. ++|-.+ .+
T Consensus 132 ---------kt~evt~f~lp~~~a~~nlet~vfD~~G~-lWFt~q~-----G~yG------rLdPa~-----------~~ 179 (353)
T COG4257 132 ---------KTLEVTRFPLPLEHADANLETAVFDPWGN-LWFTGQI-----GAYG------RLDPAR-----------NV 179 (353)
T ss_pred ---------cccceEEeecccccCCCcccceeeCCCcc-EEEeecc-----ccce------ecCccc-----------Cc
Confidence 55555543 322 44577899999997 6676654 3221 222221 12
Q ss_pred EeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC--CceeEEeeecCCEEEE
Q 003886 427 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--NFSWSLLTLDGDNIIA 504 (789)
Q Consensus 427 ~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~--~~~~~~~s~dg~~l~~ 504 (789)
+.++..|.. ...+.++-.|||. ++|++-.+ ..|-++|..++..+.+..... ..+...++..=+.+..
T Consensus 180 i~vfpaPqG--------~gpyGi~atpdGs-vwyaslag--naiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wi 248 (353)
T COG4257 180 ISVFPAPQG--------GGPYGICATPDGS-VWYASLAG--NAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWI 248 (353)
T ss_pred eeeeccCCC--------CCCcceEECCCCc-EEEEeccc--cceEEcccccCCcceecCCCcccccccccccCccCcEEE
Confidence 222322221 1235677889997 77765433 357888988887666654433 2222223222233444
Q ss_pred EEeCCCCCCeEEEEeecc
Q 003886 505 VSSSPVDVPQVKYGYFVD 522 (789)
Q Consensus 505 ~~ss~~~p~~i~~~~~~~ 522 (789)
+. -....++++++..
T Consensus 249 tt---wg~g~l~rfdPs~ 263 (353)
T COG4257 249 TT---WGTGSLHRFDPSV 263 (353)
T ss_pred ec---cCCceeeEeCccc
Confidence 32 2234577777653
No 448
>PLN02633 palmitoyl protein thioesterase family protein
Probab=92.77 E-value=1.3 Score=45.68 Aligned_cols=104 Identities=17% Similarity=0.145 Sum_probs=60.7
Q ss_pred CCCCcEEEEEcCCCCCCCchhhHHHHHHHHH-CCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCC
Q 003886 589 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (789)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~-~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (789)
..+.|+|| .||-+.+..........+.+.+ -|.-+.++.. |.. . ...+...-.+.+..+.+.+.+.+.
T Consensus 23 ~~~~P~Vi-wHG~GD~c~~~g~~~~~~l~~~~~g~~~~~i~i-g~~-~--------~~s~~~~~~~Qve~vce~l~~~~~ 91 (314)
T PLN02633 23 SVSVPFIM-LHGIGTQCSDATNANFTQLLTNLSGSPGFCLEI-GNG-V--------GDSWLMPLTQQAEIACEKVKQMKE 91 (314)
T ss_pred cCCCCeEE-ecCCCcccCCchHHHHHHHHHhCCCCceEEEEE-CCC-c--------cccceeCHHHHHHHHHHHHhhchh
Confidence 34556665 5997665444444445555544 3666666654 211 1 111222223344445555554333
Q ss_pred CCCccEEEEEcCccHHHHHHHHHhCCC--ceeEEEEeCC
Q 003886 668 ANPSKVTVVGGSHGGFLTTHLIGQAPD--KFVAAAARNP 704 (789)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~~~~~p~--~~~a~v~~~p 704 (789)
.. +-+.++|+|.||.++=.++.+.|+ .++-.|..++
T Consensus 92 l~-~G~naIGfSQGGlflRa~ierc~~~p~V~nlISlgg 129 (314)
T PLN02633 92 LS-QGYNIVGRSQGNLVARGLIEFCDGGPPVYNYISLAG 129 (314)
T ss_pred hh-CcEEEEEEccchHHHHHHHHHCCCCCCcceEEEecC
Confidence 33 459999999999999999988876 4777777654
No 449
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=92.72 E-value=3.3 Score=46.68 Aligned_cols=112 Identities=13% Similarity=0.148 Sum_probs=69.1
Q ss_pred cceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCC----CC
Q 003886 297 VGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES----IS 372 (789)
Q Consensus 297 ~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~----~~ 372 (789)
..++.-.|..+. ++.+. ..| .|.++++ ..++.+++..+ .+
T Consensus 599 lYDm~Vdp~~k~----v~t~c-------------QDr--nirif~i-----------------~sgKq~k~FKgs~~~eG 642 (1080)
T KOG1408|consen 599 LYDMAVDPTSKL----VVTVC-------------QDR--NIRIFDI-----------------ESGKQVKSFKGSRDHEG 642 (1080)
T ss_pred EEEeeeCCCcce----EEEEe-------------ccc--ceEEEec-----------------cccceeeeecccccCCC
Confidence 446666777776 65554 233 5666676 44444444333 33
Q ss_pred ccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccc
Q 003886 373 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 452 (789)
Q Consensus 373 ~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws 452 (789)
..--....|.|-+||....+. .|.++|..+|+-.....+..++ +..+.|+
T Consensus 643 ~lIKv~lDPSgiY~atScsdk-----------tl~~~Df~sgEcvA~m~GHsE~-------------------VTG~kF~ 692 (1080)
T KOG1408|consen 643 DLIKVILDPSGIYLATSCSDK-----------TLCFVDFVSGECVAQMTGHSEA-------------------VTGVKFL 692 (1080)
T ss_pred ceEEEEECCCccEEEEeecCC-----------ceEEEEeccchhhhhhcCcchh-------------------eeeeeec
Confidence 444556788999998777554 4999999888764333333332 2356799
Q ss_pred cCCCEEEEEEEeCCeEEEEEEEC
Q 003886 453 SDGCTMLLSSIWGSSQVIISVNV 475 (789)
Q Consensus 453 ~Dg~~l~~~~~~~~~~~l~~~dl 475 (789)
+|=+.|+ +...+|..-+|.+..
T Consensus 693 nDCkHlI-SvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 693 NDCKHLI-SVSGDGCIFVWKLPL 714 (1080)
T ss_pred ccchhhe-eecCCceEEEEECch
Confidence 9988774 555566666666554
No 450
>KOG2541 consensus Palmitoyl protein thioesterase [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=92.70 E-value=4.2 Score=40.75 Aligned_cols=98 Identities=21% Similarity=0.242 Sum_probs=56.5
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHHHH-CCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHH-HHHHHHHHcCCCC
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVL-TAIDHVIDMGLAN 669 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~-~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~-~~i~~l~~~~~~d 669 (789)
.|+| +.||-+.+.....+....+.+.+ -|..|.+.+.-- |-..++ -. ...++. .+.+.+...+..
T Consensus 24 ~P~i-i~HGigd~c~~~~~~~~~q~l~~~~g~~v~~leig~--g~~~s~--------l~-pl~~Qv~~~ce~v~~m~~l- 90 (296)
T KOG2541|consen 24 VPVI-VWHGIGDSCSSLSMANLTQLLEELPGSPVYCLEIGD--GIKDSS--------LM-PLWEQVDVACEKVKQMPEL- 90 (296)
T ss_pred CCEE-EEeccCcccccchHHHHHHHHHhCCCCeeEEEEecC--Ccchhh--------hc-cHHHHHHHHHHHHhcchhc-
Confidence 4555 56996665444445556666665 588888888621 111222 11 233434 344554433322
Q ss_pred CccEEEEEcCccHHHHHHHHHhCCC-ceeEEEEe
Q 003886 670 PSKVTVVGGSHGGFLTTHLIGQAPD-KFVAAAAR 702 (789)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~~~~~p~-~~~a~v~~ 702 (789)
.+-+.++|.|.||.++-.++...++ .++-.|..
T Consensus 91 sqGynivg~SQGglv~Raliq~cd~ppV~n~ISL 124 (296)
T KOG2541|consen 91 SQGYNIVGYSQGGLVARALIQFCDNPPVKNFISL 124 (296)
T ss_pred cCceEEEEEccccHHHHHHHHhCCCCCcceeEec
Confidence 4568999999999998888765432 34444443
No 451
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.67 E-value=4.8 Score=43.75 Aligned_cols=68 Identities=13% Similarity=0.145 Sum_probs=41.1
Q ss_pred ccceEEEeeCCCCCccEEEEEeecCCcee---eee--eeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCC
Q 003886 296 SVGQVVWAPLNEGLHQYLVFVGWSSETRK---LGI--KYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 370 (789)
Q Consensus 296 ~~~~~~wSPDg~~~~~~l~f~~~~~~~~~---~g~--~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~ 370 (789)
....+.|.|||+ |++.-....... .+. .........|++++. ++++.+.+..+
T Consensus 125 ~~~~l~~gpDG~-----LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p-----------------dg~~~e~~a~G 182 (367)
T TIGR02604 125 SLNSLAWGPDGW-----LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP-----------------DGGKLRVVAHG 182 (367)
T ss_pred cccCceECCCCC-----EEEecccCCCceeccCCCccCcccccCceEEEEec-----------------CCCeEEEEecC
Confidence 356889999996 666432111000 000 000012246999997 66777777766
Q ss_pred CCccCcceecCCCCE
Q 003886 371 ISSAFFPRFSPDGKF 385 (789)
Q Consensus 371 ~~~~~~p~~SpDG~~ 385 (789)
.......+|+|+|+.
T Consensus 183 ~rnp~Gl~~d~~G~l 197 (367)
T TIGR02604 183 FQNPYGHSVDSWGDV 197 (367)
T ss_pred cCCCccceECCCCCE
Confidence 666778999999975
No 452
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=92.56 E-value=2.9 Score=48.19 Aligned_cols=73 Identities=18% Similarity=0.115 Sum_probs=52.5
Q ss_pred CccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCcc
Q 003886 295 LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSA 374 (789)
Q Consensus 295 ~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~ 374 (789)
..+...+||+||.. |+-.+ +.+.|.++.+ ++++.+-|..-.+.+
T Consensus 252 ~~V~~L~fS~~G~~----LlSGG---------------~E~VLv~Wq~-----------------~T~~kqfLPRLgs~I 295 (792)
T KOG1963|consen 252 DEVNSLSFSSDGAY----LLSGG---------------REGVLVLWQL-----------------ETGKKQFLPRLGSPI 295 (792)
T ss_pred cccceeEEecCCce----Eeecc---------------cceEEEEEee-----------------cCCCcccccccCCee
Confidence 35678899999998 77666 3346777777 667755565556678
Q ss_pred CcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCC
Q 003886 375 FFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (789)
Q Consensus 375 ~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~ 414 (789)
....+||||...+....+ ++|+++...+-
T Consensus 296 ~~i~vS~ds~~~sl~~~D-----------NqI~li~~~dl 324 (792)
T KOG1963|consen 296 LHIVVSPDSDLYSLVLED-----------NQIHLIKASDL 324 (792)
T ss_pred EEEEEcCCCCeEEEEecC-----------ceEEEEeccch
Confidence 999999999976655543 46777766543
No 453
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=92.55 E-value=0.97 Score=46.65 Aligned_cols=145 Identities=17% Similarity=0.128 Sum_probs=83.2
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
.+....++|--..|+-....+ . .+.+.+ ..+.+.+-+-+.... ..++|+| +. ..|++.......
T Consensus 189 ti~svkfNpvETsILas~~sD-r--sIvLyD~R~~~Pl~KVi~~mRT----------N~IswnP-ea-fnF~~a~ED~nl 253 (433)
T KOG0268|consen 189 SISSVKFNPVETSILASCASD-R--SIVLYDLRQASPLKKVILTMRT----------NTICWNP-EA-FNFVAANEDHNL 253 (433)
T ss_pred ceeEEecCCCcchheeeeccC-C--ceEEEecccCCccceeeeeccc----------cceecCc-cc-cceeeccccccc
Confidence 467888999887776544222 1 255555 344433333333333 5799999 33 344443322211
Q ss_pred CCccCCCCC-CCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccE
Q 003886 234 PTFSLGSTK-GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 312 (789)
Q Consensus 234 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~ 312 (789)
-+++..+.. ......++-+-..+.+|+|.+.|-.++.-+..|-++....+..+.+.-+..=..+..+.||-|++.
T Consensus 254 Y~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dsky---- 329 (433)
T KOG0268|consen 254 YTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKY---- 329 (433)
T ss_pred eehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccE----
Confidence 122211111 112233444444467789988787778778889999988887665532222236789999999997
Q ss_pred EEEEee
Q 003886 313 LVFVGW 318 (789)
Q Consensus 313 l~f~~~ 318 (789)
|+..++
T Consensus 330 i~SGSd 335 (433)
T KOG0268|consen 330 IISGSD 335 (433)
T ss_pred EEecCC
Confidence 665553
No 454
>PRK13615 lipoprotein LpqB; Provisional
Probab=92.32 E-value=8 Score=44.01 Aligned_cols=63 Identities=16% Similarity=0.172 Sum_probs=39.1
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeec
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 228 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~ 228 (789)
....|+|+++| ++..+.+.+ ...+... .+|+... +..+....+ .+..+..|+||.++|.+.+.
T Consensus 374 ~Lt~PS~d~~g-~vWtv~~g~---~~~l~~~~~~G~~~~-v~v~~~~~~------~I~~lrvSrDG~R~Avi~~~ 437 (557)
T PRK13615 374 GLVAPSLDAQG-YVWSTPASD---PRGLVAWGPDGVGHP-VAVSWTATG------RVVSLEVARDGARVLVQLET 437 (557)
T ss_pred ccccCcCcCCC-CEEEEeCCC---ceEEEEecCCCceEE-eeccccCCC------eeEEEEeCCCccEEEEEEec
Confidence 36789999999 776555433 2222223 3454433 343333222 34899999999999998764
No 455
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.28 E-value=6.8 Score=44.37 Aligned_cols=89 Identities=7% Similarity=-0.034 Sum_probs=47.2
Q ss_pred cceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCc--eeEEEecCCCcc
Q 003886 124 KRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ--LEKEFHVPQTVH 201 (789)
Q Consensus 124 ~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~ 201 (789)
...+.++++. ..++..+.++... ..+....-..|++...+|+....+ ...++.+..... ...++.......
T Consensus 52 sS~G~lyl~~--R~~~~~~~~~~~~---~~~~~~~~~vs~~e~lvAagt~~g--~V~v~ql~~~~p~~~~~~t~~d~~~~ 124 (726)
T KOG3621|consen 52 SSAGSVYLYN--RHTGEMRKLKNEG---ATGITCVRSVSSVEYLVAAGTASG--RVSVFQLNKELPRDLDYVTPCDKSHK 124 (726)
T ss_pred cccceEEEEe--cCchhhhcccccC---ccceEEEEEecchhHhhhhhcCCc--eEEeehhhccCCCcceeeccccccCC
Confidence 3455666655 3444544444322 013355667999998888865543 222233333222 222333322212
Q ss_pred ccccCCCcccceeecCCCCEEEEE
Q 003886 202 GSVYADGWFEGISWNSDETLIAYV 225 (789)
Q Consensus 202 g~v~~d~~~~~~~wSpDg~~la~~ 225 (789)
..| ..+.||+||+++++.
T Consensus 125 ~rV------Tal~Ws~~~~k~ysG 142 (726)
T KOG3621|consen 125 CRV------TALEWSKNGMKLYSG 142 (726)
T ss_pred ceE------EEEEecccccEEeec
Confidence 223 799999999998774
No 456
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=92.25 E-value=0.77 Score=51.46 Aligned_cols=128 Identities=16% Similarity=0.144 Sum_probs=81.1
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHH---HHHHHHHCCcEEEEEcCCCCCCCC----chhhcc--CCC
Q 003886 575 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFG----EEALQS--LPG 645 (789)
Q Consensus 575 ~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~---~~~~la~~Gy~V~~~d~rGs~G~G----~~~~~~--~~~ 645 (789)
.|.-.+.+|.+.. + -++.+=||+.. ....+.. .+..-..+||+++.-|- |..+.. .++... ...
T Consensus 16 ~i~fev~LP~~WN--g---R~~~~GgGG~~-G~i~~~~~~~~~~~~~~~G~A~~~TD~-Gh~~~~~~~~~~~~~n~~~~~ 88 (474)
T PF07519_consen 16 NIRFEVWLPDNWN--G---RFLQVGGGGFA-GGINYADGKASMATALARGYATASTDS-GHQGSAGSDDASFGNNPEALL 88 (474)
T ss_pred eEEEEEECChhhc--c---CeEEECCCeee-CcccccccccccchhhhcCeEEEEecC-CCCCCcccccccccCCHHHHH
Confidence 5666678886331 1 23444333332 1112211 13455689999999994 211111 111100 012
Q ss_pred CCCcccHHHHHHHHHHHHHcCC-CCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchh
Q 003886 646 KVGSQDVNDVLTAIDHVIDMGL-ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 709 (789)
Q Consensus 646 ~~~~~~~~D~~~~i~~l~~~~~-~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~ 709 (789)
+++...+.+...+.+.|++.-+ -.+.+-...|.|-||-.++.+|.++|+.|.++|+.+|..++.
T Consensus 89 dfa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~AQryP~dfDGIlAgaPA~~~~ 153 (474)
T PF07519_consen 89 DFAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGLMAAQRYPEDFDGILAGAPAINWT 153 (474)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHHHHHHhChhhcCeEEeCCchHHHH
Confidence 4555556777777777777532 567888999999999999999999999999999999988763
No 457
>PF03283 PAE: Pectinacetylesterase
Probab=92.20 E-value=0.19 Score=53.96 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHH
Q 003886 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG 690 (789)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~ 690 (789)
..-+.+++++|..++.-++++|.|.|.|.||+-++..+-
T Consensus 137 ~~i~~avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~d 175 (361)
T PF03283_consen 137 YRILRAVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHAD 175 (361)
T ss_pred HHHHHHHHHHHHHhcCcccceEEEeccChHHHHHHHHHH
Confidence 456788999999998778999999999999998887554
No 458
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=92.18 E-value=0.33 Score=53.10 Aligned_cols=89 Identities=22% Similarity=0.285 Sum_probs=62.7
Q ss_pred CCcEEEEEcCCCCCCCc-hhhHHHHHHH-HHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCC-
Q 003886 591 CDPLIVVLHGGPHSVSL-SSYSKSLAFL-SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL- 667 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~-~~~~~~~~~l-a~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~- 667 (789)
..-+|+..|||+.-... .+-......| .+.|+-|+.+||.-. +........+++.-+.-|++++..
T Consensus 395 S~sli~HcHGGGfVAqsSkSHE~YLr~Wa~aL~cPiiSVdYSLA-----------PEaPFPRaleEv~fAYcW~inn~al 463 (880)
T KOG4388|consen 395 SRSLIVHCHGGGFVAQSSKSHEPYLRSWAQALGCPIISVDYSLA-----------PEAPFPRALEEVFFAYCWAINNCAL 463 (880)
T ss_pred CceEEEEecCCceeeeccccccHHHHHHHHHhCCCeEEeeeccC-----------CCCCCCcHHHHHHHHHHHHhcCHHH
Confidence 45689999998874332 2333344444 478999999999642 334445568899999999998632
Q ss_pred --CCCccEEEEEcCccHHHHHHHHH
Q 003886 668 --ANPSKVTVVGGSHGGFLTTHLIG 690 (789)
Q Consensus 668 --~d~~rv~l~G~S~GG~~a~~~~~ 690 (789)
--.+||++.|-|.||.+..-.+.
T Consensus 464 lG~TgEriv~aGDSAGgNL~~~VaL 488 (880)
T KOG4388|consen 464 LGSTGERIVLAGDSAGGNLCFTVAL 488 (880)
T ss_pred hCcccceEEEeccCCCcceeehhHH
Confidence 35699999999999987655443
No 459
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=92.17 E-value=0.32 Score=45.41 Aligned_cols=38 Identities=24% Similarity=0.155 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCC
Q 003886 654 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP 693 (789)
Q Consensus 654 D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p 693 (789)
.+...++....+ ....+|.++|||+||.+|..++....
T Consensus 13 ~i~~~~~~~~~~--~p~~~i~v~GHSlGg~lA~l~a~~~~ 50 (153)
T cd00741 13 LVLPLLKSALAQ--YPDYKIHVTGHSLGGALAGLAGLDLR 50 (153)
T ss_pred HHHHHHHHHHHH--CCCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 334444443332 35689999999999999999887654
No 460
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=92.17 E-value=2.2 Score=42.85 Aligned_cols=153 Identities=14% Similarity=0.205 Sum_probs=92.2
Q ss_pred CCccCceEEEEEccCCc---eEecc-------C----CCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccC
Q 003886 268 AGKRQPSLFVININSGE---VQAVK-------G----IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNR 333 (789)
Q Consensus 268 ~~~~~~~l~v~d~~~g~---~~~l~-------~----~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~ 333 (789)
++..+..|.|+|++.-. ..-+. + ......+..+.|-|-... + |++.+-+
T Consensus 61 SGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG----m-FtssSFD------------ 123 (397)
T KOG4283|consen 61 SGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG----M-FTSSSFD------------ 123 (397)
T ss_pred ecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc----e-eeccccc------------
Confidence 34467889999987432 11110 0 111236778899997776 4 4442222
Q ss_pred CcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCC--EEEEEecCCCCCCCCccccceeEEeec
Q 003886 334 PCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGK--FLVFLSAKSSVDSGAHSATDSLHRIDW 411 (789)
Q Consensus 334 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~--~la~~s~~~~~~~g~~~~~~~L~~~d~ 411 (789)
-.|.++|. ++.+........+.+.+-+|||=.. .|+-...++ .++.+-|+
T Consensus 124 -htlKVWDt-----------------nTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~----------~~VrLCDi 175 (397)
T KOG4283|consen 124 -HTLKVWDT-----------------NTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRD----------VQVRLCDI 175 (397)
T ss_pred -ceEEEeec-----------------ccceeeEEeecCceeehhhcChhhhcceEEEEecCC----------CcEEEEec
Confidence 25667776 4444433333445566677887543 333333332 46888898
Q ss_pred CCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEec
Q 003886 412 PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 484 (789)
Q Consensus 412 ~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt 484 (789)
.+|.-.-...+..+ ++..+.|+|....+++++..++..+||-+...+|-...+-
T Consensus 176 ~SGs~sH~LsGHr~-------------------~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD 229 (397)
T KOG4283|consen 176 ASGSFSHTLSGHRD-------------------GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLD 229 (397)
T ss_pred cCCcceeeeccccC-------------------ceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEee
Confidence 88765432233221 3557789999999999999999999998887766655554
No 461
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=91.95 E-value=0.33 Score=44.45 Aligned_cols=53 Identities=15% Similarity=0.243 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhC-------CCceeEEEEeCCcc
Q 003886 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-------PDKFVAAAARNPLC 706 (789)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~-------p~~~~a~v~~~pv~ 706 (789)
.+.+...++.+.++.. ..+|.+.|||+||.+|..++... +..+++....+|-+
T Consensus 47 ~~~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~l~~~~~~~~~~~~~~~fg~P~~ 106 (140)
T PF01764_consen 47 YDQILDALKELVEKYP--DYSIVITGHSLGGALASLAAADLASHGPSSSSNVKCYTFGAPRV 106 (140)
T ss_dssp HHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHHHHHCTTTSTTTEEEEEES-S--
T ss_pred HHHHHHHHHHHHhccc--CccchhhccchHHHHHHHHHHhhhhcccccccceeeeecCCccc
Confidence 3455666666666532 47899999999999999887642 14567777666654
No 462
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=91.85 E-value=17 Score=37.33 Aligned_cols=96 Identities=11% Similarity=0.158 Sum_probs=62.5
Q ss_pred cCceEEEEEccCCce---EeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccc
Q 003886 271 RQPSLFVININSGEV---QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 347 (789)
Q Consensus 271 ~~~~l~v~d~~~g~~---~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 347 (789)
+..+|.+.|+...+. ..+ ...+..+..++.+-+|.. |+-.+.. ..-|.+.|..
T Consensus 157 k~GqvQi~dL~~~~~~~p~~I--~AH~s~Iacv~Ln~~Gt~----vATaStk--------------GTLIRIFdt~---- 212 (346)
T KOG2111|consen 157 KTGQVQIVDLASTKPNAPSII--NAHDSDIACVALNLQGTL----VATASTK--------------GTLIRIFDTE---- 212 (346)
T ss_pred ccceEEEEEhhhcCcCCceEE--EcccCceeEEEEcCCccE----EEEeccC--------------cEEEEEEEcC----
Confidence 347888999876655 344 234456778899999987 6665521 1245666762
Q ss_pred hhhhhhhhcCCCCCCCeeecCCC--CCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCC
Q 003886 348 EASELELKESSSEDLPVVNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (789)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~Lt~~--~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~ 413 (789)
.+.....+..+ ...+...+||||+++||..|+++ .||++.+..
T Consensus 213 ------------~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKg-----------TlHiF~l~~ 257 (346)
T KOG2111|consen 213 ------------DGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKG-----------TLHIFSLRD 257 (346)
T ss_pred ------------CCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCC-----------eEEEEEeec
Confidence 33334445433 23578899999999999999775 366666544
No 463
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=91.73 E-value=9.2 Score=43.30 Aligned_cols=58 Identities=9% Similarity=0.061 Sum_probs=35.5
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEe
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 226 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~ 226 (789)
+.+.+|.-||++|+.+..++. +++=..+|...---++.+.. ...+.||+|.+.++|.-
T Consensus 118 V~SmsWn~dG~kIcIvYeDGa----vIVGsvdGNRIwgKeLkg~~---------l~hv~ws~D~~~~Lf~~ 175 (1189)
T KOG2041|consen 118 VVSMSWNLDGTKICIVYEDGA----VIVGSVDGNRIWGKELKGQL---------LAHVLWSEDLEQALFKK 175 (1189)
T ss_pred EEEEEEcCCCcEEEEEEccCC----EEEEeeccceecchhcchhe---------ccceeecccHHHHHhhh
Confidence 678899999999999877651 22222333322111221111 15688999999888853
No 464
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=91.58 E-value=0.65 Score=47.36 Aligned_cols=106 Identities=16% Similarity=0.197 Sum_probs=46.2
Q ss_pred CCCcEEEEEcCCCCCCCch-hhHHHHHHHHH--CCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHH-HHHHHc
Q 003886 590 SCDPLIVVLHGGPHSVSLS-SYSKSLAFLSS--VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAI-DHVIDM 665 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~-~~~~~~~~la~--~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i-~~l~~~ 665 (789)
.+.|+| +.||-+.+.... .+......+.+ -|..|.+++.-. +..++.... + ...+.++.+.+ +.+.+.
T Consensus 4 ~~~PvV-iwHGmGD~~~~~~~m~~i~~~i~~~~PG~yV~si~ig~--~~~~D~~~s----~-f~~v~~Qv~~vc~~l~~~ 75 (279)
T PF02089_consen 4 SPLPVV-IWHGMGDSCCNPSSMGSIKELIEEQHPGTYVHSIEIGN--DPSEDVENS----F-FGNVNDQVEQVCEQLAND 75 (279)
T ss_dssp SS--EE-EE--TT--S--TTTHHHHHHHHHHHSTT--EEE--SSS--SHHHHHHHH----H-HSHHHHHHHHHHHHHHH-
T ss_pred CCCcEE-EEEcCccccCChhHHHHHHHHHHHhCCCceEEEEEECC--Ccchhhhhh----H-HHHHHHHHHHHHHHHhhC
Confidence 445555 569966543222 22222222222 477888888521 110111111 0 11244444433 333333
Q ss_pred CCCCCccEEEEEcCccHHHHHHHHHhCCC-ceeEEEEeCC
Q 003886 666 GLANPSKVTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNP 704 (789)
Q Consensus 666 ~~~d~~rv~l~G~S~GG~~a~~~~~~~p~-~~~a~v~~~p 704 (789)
+.+. +-+.++|+|.||.+.=.++.+.++ .++-.|..++
T Consensus 76 p~L~-~G~~~IGfSQGgl~lRa~vq~c~~~~V~nlISlgg 114 (279)
T PF02089_consen 76 PELA-NGFNAIGFSQGGLFLRAYVQRCNDPPVHNLISLGG 114 (279)
T ss_dssp GGGT-T-EEEEEETCHHHHHHHHHHH-TSS-EEEEEEES-
T ss_pred hhhh-cceeeeeeccccHHHHHHHHHCCCCCceeEEEecC
Confidence 3332 469999999999999999888764 5777777654
No 465
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=91.55 E-value=17 Score=36.81 Aligned_cols=34 Identities=12% Similarity=0.180 Sum_probs=26.1
Q ss_pred ceEEEEEccCCc----eEeccCCCCCCccceEEEeeCCCC
Q 003886 273 PSLFVININSGE----VQAVKGIPKSLSVGQVVWAPLNEG 308 (789)
Q Consensus 273 ~~l~v~d~~~g~----~~~l~~~~~~~~~~~~~wSPDg~~ 308 (789)
...-+||+++|. -++| +..+-.+..++|+-+|..
T Consensus 173 TTCTiWdie~~~~~~vkTQL--IAHDKEV~DIaf~~~s~~ 210 (364)
T KOG0290|consen 173 TTCTIWDIETGVSGTVKTQL--IAHDKEVYDIAFLKGSRD 210 (364)
T ss_pred CeEEEEEEeeccccceeeEE--EecCcceeEEEeccCccc
Confidence 567789998873 2456 677778899999998876
No 466
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=91.45 E-value=18 Score=36.87 Aligned_cols=213 Identities=12% Similarity=0.050 Sum_probs=105.0
Q ss_pred cccceeEEEEEEeecCCCC-ccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCC
Q 003886 122 ANKRKKFMLSTVISKENEN-SVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQ 198 (789)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~-~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~ 198 (789)
+++....+..+.+...+.- .+-..... +.+....||-||.+++...-. + -..+| ..++..++-....
T Consensus 45 A~SWD~tVR~wevq~~g~~~~ka~~~~~-----~PvL~v~WsddgskVf~g~~D--k---~~k~wDL~S~Q~~~v~~Hd~ 114 (347)
T KOG0647|consen 45 AGSWDGTVRIWEVQNSGQLVPKAQQSHD-----GPVLDVCWSDDGSKVFSGGCD--K---QAKLWDLASGQVSQVAAHDA 114 (347)
T ss_pred ecccCCceEEEEEecCCcccchhhhccC-----CCeEEEEEccCCceEEeeccC--C---ceEEEEccCCCeeeeeeccc
Confidence 4455666777776443221 11111112 348889999999777544332 2 23444 3556666554433
Q ss_pred CccccccCCCcccceeecCCCC--EEEEEeecCCCCCCCccCCCCCCC--CCCcCCCCCCCcceeeCCcc--cccCCccC
Q 003886 199 TVHGSVYADGWFEGISWNSDET--LIAYVAEEPSPSKPTFSLGSTKGG--SSDKDCNSWKGQGDWEEDWG--ETYAGKRQ 272 (789)
Q Consensus 199 ~~~g~v~~d~~~~~~~wSpDg~--~la~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~g--~~~~~~~~ 272 (789)
.+ ..+.|=+... -|+..+-+++.+ +|+....... ..++++ .|..|-- -..+....
T Consensus 115 pv----------kt~~wv~~~~~~cl~TGSWDKTlK--fWD~R~~~pv~t~~LPeR-------vYa~Dv~~pm~vVata~ 175 (347)
T KOG0647|consen 115 PV----------KTCHWVPGMNYQCLVTGSWDKTLK--FWDTRSSNPVATLQLPER-------VYAADVLYPMAVVATAE 175 (347)
T ss_pred ce----------eEEEEecCCCcceeEeccccccee--ecccCCCCeeeeeeccce-------eeehhccCceeEEEecC
Confidence 33 6677766554 455555555433 3332111110 011110 1111100 01122345
Q ss_pred ceEEEEEccCCce--EeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhh
Q 003886 273 PSLFVININSGEV--QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (789)
Q Consensus 273 ~~l~v~d~~~g~~--~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (789)
.+|.+++++.+.. +++. .+-......++..+|.+. .+..+-+ .+..|..+|-+.. +++
T Consensus 176 r~i~vynL~n~~te~k~~~-SpLk~Q~R~va~f~d~~~----~alGsiE-------------Grv~iq~id~~~~--~~n 235 (347)
T KOG0647|consen 176 RHIAVYNLENPPTEFKRIE-SPLKWQTRCVACFQDKDG----FALGSIE-------------GRVAIQYIDDPNP--KDN 235 (347)
T ss_pred CcEEEEEcCCCcchhhhhc-CcccceeeEEEEEecCCc----eEeeeec-------------ceEEEEecCCCCc--cCc
Confidence 7788889876543 2332 444557778888898887 5444421 2234555553100 000
Q ss_pred hhhhhcCCCCCCCeeecC---C-CCCccCcceecCCCCEEEEEecC
Q 003886 351 ELELKESSSEDLPVVNLT---E-SISSAFFPRFSPDGKFLVFLSAK 392 (789)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt---~-~~~~~~~p~~SpDG~~la~~s~~ 392 (789)
-+-++.+-+ . ....+.+.+|.|.=..|+.+..+
T Consensus 236 ---------FtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsD 272 (347)
T KOG0647|consen 236 ---------FTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSD 272 (347)
T ss_pred ---------eeEEEeccCCCCCCceEEecceEeecccceEEEecCC
Confidence 111222211 1 24457788999987778776655
No 467
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=91.44 E-value=10 Score=42.29 Aligned_cols=94 Identities=18% Similarity=0.174 Sum_probs=59.7
Q ss_pred EEEEEccCCceEecc--CCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhh
Q 003886 275 LFVININSGEVQAVK--GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (789)
Q Consensus 275 l~v~d~~~g~~~~l~--~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (789)
-.+++...++++++. .++-...+...+++|+.++ ++... .++.|..+|.
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~k----LvlGC---------------~DgSiiLyD~---------- 288 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDK----LVLGC---------------EDGSIILYDT---------- 288 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCcccce----EEEEe---------------cCCeEEEEEc----------
Confidence 444555555554431 2344456678899999998 77776 2346888885
Q ss_pred hhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCC
Q 003886 353 ELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (789)
Q Consensus 353 ~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~ 416 (789)
. .....++...-.....+|.|||..++..+.++ +|.++|..-+..
T Consensus 289 -------~-~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qG-----------elQ~FD~ALspi 333 (545)
T PF11768_consen 289 -------T-RGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQG-----------ELQCFDMALSPI 333 (545)
T ss_pred -------C-CCeeeeeeecccceEEEEcCCCcEEEEEcCCc-----------eEEEEEeecCcc
Confidence 2 23344444444577889999999777666543 588888765443
No 468
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.43 E-value=6.4 Score=42.77 Aligned_cols=55 Identities=18% Similarity=0.111 Sum_probs=37.1
Q ss_pred CCCCccccCCCEEEEEEEeC-----------------CeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCE
Q 003886 446 ILSNPWLSDGCTMLLSSIWG-----------------SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDN 501 (789)
Q Consensus 446 ~~~~~ws~Dg~~l~~~~~~~-----------------~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~ 501 (789)
...+.|.|||+ ||++.... ....+++++.++++.+.+...........|+++|+.
T Consensus 126 ~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l 197 (367)
T TIGR02604 126 LNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDV 197 (367)
T ss_pred ccCceECCCCC-EEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCE
Confidence 35788999996 77754421 014699999998888877655443344577777654
No 469
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=91.39 E-value=24 Score=38.30 Aligned_cols=59 Identities=15% Similarity=0.100 Sum_probs=34.0
Q ss_pred CCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 455 GCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 455 g~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
+..+|+.+. . ..++.+|..+|+...-..... ......+++.+++... -..++.++..++
T Consensus 241 ~~~vy~~~~-~--g~l~a~d~~tG~~~W~~~~~~---~~~p~~~~~~vyv~~~----~G~l~~~d~~tG 299 (377)
T TIGR03300 241 GGQVYAVSY-Q--GRVAALDLRSGRVLWKRDASS---YQGPAVDDNRLYVTDA----DGVVVALDRRSG 299 (377)
T ss_pred CCEEEEEEc-C--CEEEEEECCCCcEEEeeccCC---ccCceEeCCEEEEECC----CCeEEEEECCCC
Confidence 445766543 2 358889999998765433221 1233456676665532 245888887654
No 470
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=91.38 E-value=1.5 Score=44.72 Aligned_cols=144 Identities=17% Similarity=0.160 Sum_probs=82.4
Q ss_pred cCceEEEEEccCCceEecc---CCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccc
Q 003886 271 RQPSLFVININSGEVQAVK---GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 347 (789)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~---~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 347 (789)
.+..||-...+++ .+.+. ....+......+|+=|.....-.++..+ ....|+++|+
T Consensus 64 ~rvtiy~c~~d~~-ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G---------------~~GvIrVid~----- 122 (385)
T KOG1034|consen 64 NRVTIYECPGDGG-IRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG---------------YLGVIRVIDV----- 122 (385)
T ss_pred cEEEEEEECCccc-eeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec---------------ceeEEEEEec-----
Confidence 4455666555442 23221 1112335667889888663222233333 2347999998
Q ss_pred hhhhhhhhcCCCCCCC-eeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeE
Q 003886 348 EASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 426 (789)
Q Consensus 348 ~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v 426 (789)
..++ ...+-.+.+.+...++-|+--+|+....++ ..|.+||+++..-..+-.+.
T Consensus 123 ------------~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD----------~svRlwnI~~~~Cv~VfGG~--- 177 (385)
T KOG1034|consen 123 ------------VSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKD----------HSVRLWNIQTDVCVAVFGGV--- 177 (385)
T ss_pred ------------chhhhccceeccCccchhhhcCCCCCcEEEEecCC----------ceEEEEeccCCeEEEEeccc---
Confidence 3333 456777778899999999987777666554 25888998774432221111
Q ss_pred EeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEE
Q 003886 427 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 474 (789)
Q Consensus 427 ~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~d 474 (789)
+. +...+.++.|+.||.+|+ +...+....+|+++
T Consensus 178 -------eg------HrdeVLSvD~~~~gd~i~-ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 178 -------EG------HRDEVLSVDFSLDGDRIA-SCGMDHSLKLWRLN 211 (385)
T ss_pred -------cc------ccCcEEEEEEcCCCCeee-ccCCcceEEEEecC
Confidence 10 112456778999999653 33333445566665
No 471
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.28 E-value=16 Score=40.96 Aligned_cols=201 Identities=10% Similarity=0.115 Sum_probs=108.2
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
.+-.+.+.|---+++-.-..+ . ..|| .+....+-+++.... .....|=+--++|+..+.+...+
T Consensus 15 RVKsVd~HPtePw~la~LynG--~---V~IWnyetqtmVksfeV~~~P---------vRa~kfiaRknWiv~GsDD~~Ir 80 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALYNG--D---VQIWNYETQTMVKSFEVSEVP---------VRAAKFIARKNWIVTGSDDMQIR 80 (794)
T ss_pred ceeeeecCCCCceEEEeeecC--e---eEEEecccceeeeeeeecccc---------hhhheeeeccceEEEecCCceEE
Confidence 466777888877776543332 2 4555 233444444442211 14455555566666665554332
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCc-eEeccCCCCC-CccceEEEeeCCCCCc
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKS-LSVGQVVWAPLNEGLH 310 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~-~~~l~~~~~~-~~~~~~~wSPDg~~~~ 310 (789)
.|+..+....+.+..++.|.....-.|.--..++...+-.|.+||-+.+= ..+. ..++ -.+-+++|.|.....
T Consensus 81 --Vfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qt--feGH~HyVMqv~fnPkD~nt- 155 (794)
T KOG0276|consen 81 --VFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQT--FEGHEHYVMQVAFNPKDPNT- 155 (794)
T ss_pred --EEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeE--EcCcceEEEEEEecCCCccc-
Confidence 23333344445555666666544443332222334445667778876652 2233 2333 357789999955430
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEe
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 390 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s 390 (789)
.+..+ -.+ .+-++.+. ..-...+|..+...+....+-+-|.+=+.++
T Consensus 156 --FaS~s-------------LDr--TVKVWslg----------------s~~~nfTl~gHekGVN~Vdyy~~gdkpylIs 202 (794)
T KOG0276|consen 156 --FASAS-------------LDR--TVKVWSLG----------------SPHPNFTLEGHEKGVNCVDYYTGGDKPYLIS 202 (794)
T ss_pred --eeeee-------------ccc--cEEEEEcC----------------CCCCceeeeccccCcceEEeccCCCcceEEe
Confidence 33333 122 45555551 2233456777766777888888776666666
Q ss_pred cCCCCCCCCccccceeEEeecCCCCC
Q 003886 391 AKSSVDSGAHSATDSLHRIDWPTNGN 416 (789)
Q Consensus 391 ~~~~~~~g~~~~~~~L~~~d~~~~~~ 416 (789)
..+ ...+.+||.++..-
T Consensus 203 gaD---------D~tiKvWDyQtk~C 219 (794)
T KOG0276|consen 203 GAD---------DLTIKVWDYQTKSC 219 (794)
T ss_pred cCC---------CceEEEeecchHHH
Confidence 443 24588999887543
No 472
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=91.10 E-value=1.5 Score=42.77 Aligned_cols=85 Identities=16% Similarity=0.198 Sum_probs=50.4
Q ss_pred chhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHH-HHHHHHHcCCCCCccEEEEEcCccHHHH
Q 003886 607 LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLT-AIDHVIDMGLANPSKVTVVGGSHGGFLT 685 (789)
Q Consensus 607 ~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~-~i~~l~~~~~~d~~rv~l~G~S~GG~~a 685 (789)
...|......|.. .+.|+.++.+|. +... . ....++++.. .++.+.+. ....++.++|||+||.++
T Consensus 12 ~~~~~~~~~~l~~-~~~v~~~~~~g~---~~~~--~-----~~~~~~~~~~~~~~~l~~~--~~~~~~~l~g~s~Gg~~a 78 (212)
T smart00824 12 PHEYARLAAALRG-RRDVSALPLPGF---GPGE--P-----LPASADALVEAQAEAVLRA--AGGRPFVLVGHSSGGLLA 78 (212)
T ss_pred HHHHHHHHHhcCC-CccEEEecCCCC---CCCC--C-----CCCCHHHHHHHHHHHHHHh--cCCCCeEEEEECHHHHHH
Confidence 3456555566644 589999998773 2211 0 1122344333 23333332 235679999999999999
Q ss_pred HHHHHh---CCCceeEEEEeCC
Q 003886 686 THLIGQ---APDKFVAAAARNP 704 (789)
Q Consensus 686 ~~~~~~---~p~~~~a~v~~~p 704 (789)
..++.+ .++.+..++...+
T Consensus 79 ~~~a~~l~~~~~~~~~l~~~~~ 100 (212)
T smart00824 79 HAVAARLEARGIPPAAVVLLDT 100 (212)
T ss_pred HHHHHHHHhCCCCCcEEEEEcc
Confidence 877775 3445666666544
No 473
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=91.09 E-value=5.1 Score=42.14 Aligned_cols=93 Identities=10% Similarity=0.051 Sum_probs=50.1
Q ss_pred EEEEEccCCceEeccCCCCCC-ccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhh
Q 003886 275 LFVININSGEVQAVKGIPKSL-SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELE 353 (789)
Q Consensus 275 l~v~d~~~g~~~~l~~~~~~~-~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~ 353 (789)
+.++.+..+..+.+ -++. -..+++||||++. +.+++++ .+|++...+
T Consensus 134 ~di~s~~~~~~~~~---lGhvSml~dVavS~D~~~-----IitaDRD--------------EkIRvs~yp---------- 181 (390)
T KOG3914|consen 134 FDILSADSGRCEPI---LGHVSMLLDVAVSPDDQF-----IITADRD--------------EKIRVSRYP---------- 181 (390)
T ss_pred eeeecccccCcchh---hhhhhhhheeeecCCCCE-----EEEecCC--------------ceEEEEecC----------
Confidence 33444444555544 2333 4679999999975 5555433 356666653
Q ss_pred hhcCCCCCCCee-ecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCC
Q 003886 354 LKESSSEDLPVV-NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 417 (789)
Q Consensus 354 ~~~~~~~~~~~~-~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~ 417 (789)
++-... -..++...+..++.-++ ..|+-.+ +..+|++||+.++...
T Consensus 182 ------a~f~IesfclGH~eFVS~isl~~~-~~LlS~s-----------GD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 182 ------ATFVIESFCLGHKEFVSTISLTDN-YLLLSGS-----------GDKTLRLWDITSGKLL 228 (390)
T ss_pred ------cccchhhhccccHhheeeeeeccC-ceeeecC-----------CCCcEEEEecccCCcc
Confidence 222222 12233444556665544 3333322 2357999999887653
No 474
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=90.72 E-value=2.7 Score=42.26 Aligned_cols=141 Identities=16% Similarity=0.103 Sum_probs=72.3
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEE--EeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhh
Q 003886 273 PSLFVININSGEVQAVKGIPKSLSVGQVV--WAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (789)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~--wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (789)
..|..+|+.+|+...-..... ...... -.++++. ++... ....|+.+|+
T Consensus 3 g~l~~~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~----v~~~~---------------~~~~l~~~d~-------- 53 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLGP--GIGGPVATAVPDGGR----VYVAS---------------GDGNLYALDA-------- 53 (238)
T ss_dssp SEEEEEETTTTEEEEEEECSS--SCSSEEETEEEETTE----EEEEE---------------TTSEEEEEET--------
T ss_pred CEEEEEECCCCCEEEEEECCC--CCCCccceEEEeCCE----EEEEc---------------CCCEEEEEEC--------
Confidence 578899998887654421211 123333 3446664 44442 2347999997
Q ss_pred hhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeee
Q 003886 351 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 430 (789)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~ 430 (789)
.+|+...-.........+. ..++..|++.... .+|+.+|..+|+..-. ...
T Consensus 54 ---------~tG~~~W~~~~~~~~~~~~-~~~~~~v~v~~~~-----------~~l~~~d~~tG~~~W~------~~~-- 104 (238)
T PF13360_consen 54 ---------KTGKVLWRFDLPGPISGAP-VVDGGRVYVGTSD-----------GSLYALDAKTGKVLWS------IYL-- 104 (238)
T ss_dssp ---------TTSEEEEEEECSSCGGSGE-EEETTEEEEEETT-----------SEEEEEETTTSCEEEE------EEE--
T ss_pred ---------CCCCEEEEeecccccccee-eecccccccccce-----------eeeEecccCCcceeee------ecc--
Confidence 5666543222222222222 3345556555522 2699999888765311 000
Q ss_pred eccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEE
Q 003886 431 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 481 (789)
Q Consensus 431 ~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~ 481 (789)
... +..+ .........++..+++... ...|+.+|+.+|++.
T Consensus 105 -~~~-~~~~-----~~~~~~~~~~~~~~~~~~~---~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 105 -TSS-PPAG-----VRSSSSPAVDGDRLYVGTS---SGKLVALDPKTGKLL 145 (238)
T ss_dssp --SS-CTCS-----TB--SEEEEETTEEEEEET---CSEEEEEETTTTEEE
T ss_pred -ccc-cccc-----cccccCceEecCEEEEEec---cCcEEEEecCCCcEE
Confidence 000 0000 0112223334666766543 457899999999884
No 475
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=90.72 E-value=26 Score=37.48 Aligned_cols=170 Identities=18% Similarity=0.196 Sum_probs=86.6
Q ss_pred ceEEEEEccC-C-ceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhh
Q 003886 273 PSLFVININS-G-EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (789)
Q Consensus 273 ~~l~v~d~~~-g-~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (789)
..+.+|+..+ . ....+ ......+..+.|+|+++. ++..+. ....+..+++.
T Consensus 134 ~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~----~~~~~~--------------~~~~~~~~~~~------- 186 (466)
T COG2319 134 GTVKLWDLSTPGKLIRTL--EGHSESVTSLAFSPDGKL----LASGSS--------------LDGTIKLWDLR------- 186 (466)
T ss_pred ccEEEEEecCCCeEEEEE--ecCcccEEEEEECCCCCE----EEecCC--------------CCCceEEEEcC-------
Confidence 5688888876 3 33334 233334558999999986 555531 12357777761
Q ss_pred hhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeee
Q 003886 351 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 430 (789)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~ 430 (789)
.......+..+...+...+|+|+|+.++.....+ ..+.+||...+..... ..
T Consensus 187 ---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d----------~~i~~wd~~~~~~~~~---------~~ 238 (466)
T COG2319 187 ---------TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSD----------GTIRLWDLSTGKLLRS---------TL 238 (466)
T ss_pred ---------CCceEEeeccCCCceEEEEEcCCcceEEEEecCC----------CcEEEEECCCCcEEee---------ec
Confidence 2233444544566788899999998333331221 2355666553222110 00
Q ss_pred eccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCC
Q 003886 431 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSP 509 (789)
Q Consensus 431 ~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~ 509 (789)
. +.. ... ...|++++..+ +.....+...+|.+.........+......+....+.+++..++. .+..
T Consensus 239 ~--------~~~-~~~-~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~d 305 (466)
T COG2319 239 S--------GHS-DSV-VSSFSPDGSLL-ASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS-GSSD 305 (466)
T ss_pred C--------CCC-cce-eEeECCCCCEE-EEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEE-eeCC
Confidence 0 000 000 11688998544 455555666666554322212333111223344466676666666 4333
No 476
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.67 E-value=33 Score=38.54 Aligned_cols=169 Identities=14% Similarity=0.147 Sum_probs=90.1
Q ss_pred eeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCceeEEEecCCCccccc
Q 003886 126 KKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSV 204 (789)
Q Consensus 126 ~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~g~v 204 (789)
.-+|.+++.. ...+..++..++ ..+...+..|.--+++..+++- ++.+|+ .++........+..| .|
T Consensus 76 D~~IrVfnyn-t~ekV~~FeAH~-----DyIR~iavHPt~P~vLtsSDDm-----~iKlW~we~~wa~~qtfeGH~H-yV 143 (794)
T KOG0276|consen 76 DMQIRVFNYN-TGEKVKTFEAHS-----DYIRSIAVHPTLPYVLTSSDDM-----TIKLWDWENEWACEQTFEGHEH-YV 143 (794)
T ss_pred CceEEEEecc-cceeeEEeeccc-----cceeeeeecCCCCeEEecCCcc-----EEEEeeccCceeeeeEEcCcce-EE
Confidence 3455555542 233344454444 4577888999888887766553 677773 333222222222222 22
Q ss_pred cCCCcccceeecC-CCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcc--cccCCccCceEEEEEcc
Q 003886 205 YADGWFEGISWNS-DETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWG--ETYAGKRQPSLFVININ 281 (789)
Q Consensus 205 ~~d~~~~~~~wSp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g--~~~~~~~~~~l~v~d~~ 281 (789)
..+.|.| |-...|..+-+.+.+ .|...........+.+..-+....|-+... ..+++..+..|.+||-+
T Consensus 144 ------Mqv~fnPkD~ntFaS~sLDrTVK--VWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQ 215 (794)
T KOG0276|consen 144 ------MQVAFNPKDPNTFASASLDRTVK--VWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQ 215 (794)
T ss_pred ------EEEEecCCCccceeeeeccccEE--EEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecc
Confidence 7889999 567778777777654 344322222223333333333333433221 23445567789999998
Q ss_pred CCceEeccCCCCCC-ccceEEEeeCCCCCccEEEEEeecCC
Q 003886 282 SGEVQAVKGIPKSL-SVGQVVWAPLNEGLHQYLVFVGWSSE 321 (789)
Q Consensus 282 ~g~~~~l~~~~~~~-~~~~~~wSPDg~~~~~~l~f~~~~~~ 321 (789)
+....+. ..++. .+..+.|.|.=. |+.++.+++
T Consensus 216 tk~CV~T--LeGHt~Nvs~v~fhp~lp-----iiisgsEDG 249 (794)
T KOG0276|consen 216 TKSCVQT--LEGHTNNVSFVFFHPELP-----IIISGSEDG 249 (794)
T ss_pred hHHHHHH--hhcccccceEEEecCCCc-----EEEEecCCc
Confidence 8764433 23333 456667777544 555554443
No 477
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.65 E-value=26 Score=37.30 Aligned_cols=98 Identities=20% Similarity=0.181 Sum_probs=52.1
Q ss_pred CCccCcceecCCCCEEEEEecCCCCCCCCcc-----ccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccC
Q 003886 371 ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS-----ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 445 (789)
Q Consensus 371 ~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~-----~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~ 445 (789)
+......+++|||+.|+.+....-...|... ...+|+.+|..+.+.. ... -..++...+... ....
T Consensus 146 N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~--~~~--~~y~ld~~~~~~-----~~~~ 216 (326)
T PF13449_consen 146 NRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEP--VAE--YAYPLDPPPTAP-----GDNG 216 (326)
T ss_pred CCCeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCcc--ceE--EEEeCCcccccc-----CCCC
Confidence 3457788999999977666544321112111 1256888887663321 000 011111100000 1124
Q ss_pred CCCCccccCCCEEEEEEEe----CCeEEEEEEECCC
Q 003886 446 ILSNPWLSDGCTMLLSSIW----GSSQVIISVNVSS 477 (789)
Q Consensus 446 ~~~~~ws~Dg~~l~~~~~~----~~~~~l~~~dl~t 477 (789)
+..+.+.+|++.|++.... ....+||.+++..
T Consensus 217 isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 217 ISDIAALPDGRLLVLERDFSPGTGNYKRIYRVDLSD 252 (326)
T ss_pred ceeEEEECCCcEEEEEccCCCCccceEEEEEEEccc
Confidence 5677888999866555442 3467899999753
No 478
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.64 E-value=1.1 Score=50.31 Aligned_cols=96 Identities=16% Similarity=0.181 Sum_probs=58.6
Q ss_pred ceEEEEEccCCc-eEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhh
Q 003886 273 PSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (789)
Q Consensus 273 ~~l~v~d~~~g~-~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (789)
..|.+||++.++ ++.| +..-..+-.+.|+|=|.. |.+|.. .+++.++|..
T Consensus 92 gtiK~wDleeAk~vrtL--tgh~~~~~sv~f~P~~~~------~a~gSt-------------dtd~~iwD~R-------- 142 (825)
T KOG0267|consen 92 GTIKVWDLEEAKIVRTL--TGHLLNITSVDFHPYGEF------FASGST-------------DTDLKIWDIR-------- 142 (825)
T ss_pred Cceeeeehhhhhhhhhh--hccccCcceeeeccceEE------eccccc-------------cccceehhhh--------
Confidence 578999998876 4555 333445667889997764 344322 2356666652
Q ss_pred hhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCC
Q 003886 352 LELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (789)
Q Consensus 352 ~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~ 416 (789)
..|-...--.+.+.....+|+|||++++-... ...+.+||+..|+.
T Consensus 143 --------k~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e-----------d~tvki~d~~agk~ 188 (825)
T KOG0267|consen 143 --------KKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE-----------DNTVKIWDLTAGKL 188 (825)
T ss_pred --------ccCceeeecCCcceeEEEeecCCCceeeccCC-----------cceeeeeccccccc
Confidence 12222233334555777899999998764332 23577888766544
No 479
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=90.62 E-value=0.32 Score=47.33 Aligned_cols=85 Identities=18% Similarity=0.146 Sum_probs=53.4
Q ss_pred cEEEEEcCCCCCCCCch-hhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhC----C---
Q 003886 622 YSLLIVNYRGSLGFGEE-ALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA----P--- 693 (789)
Q Consensus 622 y~V~~~d~rGs~G~G~~-~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~----p--- 693 (789)
..|++|=||-..-.... ...............|+.++.+|.+++- -+...++|.|||.|+.+...++-+. |
T Consensus 46 ~~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~-n~GRPfILaGHSQGs~~l~~LL~e~~~~~pl~~ 124 (207)
T PF11288_consen 46 CNVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANY-NNGRPFILAGHSQGSMHLLRLLKEEIAGDPLRK 124 (207)
T ss_pred CccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhc-CCCCCEEEEEeChHHHHHHHHHHHHhcCchHHh
Confidence 68999999843211111 0000011222334789999999988873 2345899999999999999998753 2
Q ss_pred CceeEEEEeCCccc
Q 003886 694 DKFVAAAARNPLCN 707 (789)
Q Consensus 694 ~~~~a~v~~~pv~~ 707 (789)
.++.|-+...++..
T Consensus 125 rLVAAYliG~~v~~ 138 (207)
T PF11288_consen 125 RLVAAYLIGYPVTV 138 (207)
T ss_pred hhheeeecCccccH
Confidence 24455555555543
No 480
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=90.45 E-value=10 Score=42.99 Aligned_cols=108 Identities=15% Similarity=0.073 Sum_probs=71.7
Q ss_pred eeCCcccccCCccCceEEEEEccCCceEecc-CCCCC-CccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcc
Q 003886 259 WEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKS-LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCA 336 (789)
Q Consensus 259 ~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~-~~~~~-~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~ 336 (789)
.++.|+-....-.+..|.++|+++|+.++.. +..++ ...--+...|.|-+ |+-.. .+ ..
T Consensus 604 Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY----~atSc-------------sd--kt 664 (1080)
T KOG1408|consen 604 VDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIY----LATSC-------------SD--KT 664 (1080)
T ss_pred eCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccE----EEEee-------------cC--Cc
Confidence 3444544444445677889999999877662 22221 23335566777665 55433 22 36
Q ss_pred eEEEecccccchhhhhhhhcCCCCCCCe-eecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCC
Q 003886 337 LYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (789)
Q Consensus 337 l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~ 413 (789)
|..+|. -++++ .+++.+...++...|++|=|.|+-++.+. -|++|.++.
T Consensus 665 l~~~Df-----------------~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDg-----------CIFvW~lp~ 714 (1080)
T KOG1408|consen 665 LCFVDF-----------------VSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDG-----------CIFVWKLPL 714 (1080)
T ss_pred eEEEEe-----------------ccchhhhhhcCcchheeeeeecccchhheeecCCc-----------eEEEEECch
Confidence 888887 55664 47788888899999999999998877553 488888765
No 481
>PRK13614 lipoprotein LpqB; Provisional
Probab=90.38 E-value=13 Score=42.40 Aligned_cols=56 Identities=9% Similarity=0.118 Sum_probs=36.3
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEE
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 225 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~ 225 (789)
.+.+++.|+||+.+|++... ...++..+.++..+.+..- ... ..++|.++| ++..+
T Consensus 344 ~~~s~avS~~g~~~A~~~~~---~~~l~~~~~g~~~~~~~~g-~~L----------t~PS~d~~g-~vWtv 399 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNGS---RTTLYTVSPGQPARALTSG-STL----------TRPSFSPQD-WVWTA 399 (573)
T ss_pred cccceeecCCCceEEEecCC---CcEEEEecCCCcceeeecC-CCc----------cCCcccCCC-CEEEe
Confidence 46688999999999998432 2356656655544444432 223 689999998 55443
No 482
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=90.35 E-value=22 Score=36.02 Aligned_cols=31 Identities=29% Similarity=0.458 Sum_probs=24.9
Q ss_pred CccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCC
Q 003886 372 SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (789)
Q Consensus 372 ~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~ 413 (789)
..+.....||||+.||.+...+ .|.+|++++
T Consensus 230 d~i~kmSlSPdg~~La~ih~sG-----------~lsLW~iPs 260 (282)
T PF15492_consen 230 DGIFKMSLSPDGSLLACIHFSG-----------SLSLWEIPS 260 (282)
T ss_pred CceEEEEECCCCCEEEEEEcCC-----------eEEEEecCc
Confidence 3467788999999999888653 588898876
No 483
>PRK13613 lipoprotein LpqB; Provisional
Probab=90.32 E-value=14 Score=42.71 Aligned_cols=85 Identities=16% Similarity=0.151 Sum_probs=49.1
Q ss_pred ccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeec--CCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCc
Q 003886 373 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW--PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP 450 (789)
Q Consensus 373 ~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~--~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ 450 (789)
.+...+.|+||-+++.+.... +..+|++--+ ..++.+.++. ...+.. .. ..+..+.
T Consensus 456 ~I~~lrvSrDG~RvAvv~~~~--------g~~~v~va~V~R~~~G~~~l~~----~~~l~~-----~l-----~~v~~~~ 513 (599)
T PRK13613 456 RVVAVRVARDGVRVALIVEKD--------GRRSLQIGRIVRDAKAVVSVEE----FRSLAP-----EL-----EDVTDMS 513 (599)
T ss_pred EeEEEEECCCccEEEEEEecC--------CCcEEEEEEEEeCCCCcEEeec----cEEecc-----CC-----CccceeE
Confidence 588899999999999998653 2234555433 2222222211 111100 00 1245778
Q ss_pred cccCCCEEEEE-EEeCCeEEEEEEECCCCcE
Q 003886 451 WLSDGCTMLLS-SIWGSSQVIISVNVSSGEL 480 (789)
Q Consensus 451 ws~Dg~~l~~~-~~~~~~~~l~~~dl~tg~~ 480 (789)
|..++. |++. ....+...+|.+++++...
T Consensus 514 W~~~~s-L~Vlg~~~~~~~~v~~v~vdG~~~ 543 (599)
T PRK13613 514 WAGDSQ-LVVLGREEGGVQQARYVQVDGSTP 543 (599)
T ss_pred EcCCCE-EEEEeccCCCCcceEEEecCCcCc
Confidence 998876 5554 3444577799999876544
No 484
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=90.27 E-value=7.1 Score=38.38 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=34.6
Q ss_pred CCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEee
Q 003886 448 SNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLT 496 (789)
Q Consensus 448 ~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s 496 (789)
.+...|....|+|.+ |...+|.+|+++|++++...++.+|......
T Consensus 119 am~ldP~enSi~~Ag---GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~ 164 (325)
T KOG0649|consen 119 AMWLDPSENSILFAG---GDGVIYQVDLEDGRIQREYRGHTDYVHSVVG 164 (325)
T ss_pred eeEeccCCCcEEEec---CCeEEEEEEecCCEEEEEEcCCcceeeeeee
Confidence 344456666787764 7778999999999999999998877554444
No 485
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=90.27 E-value=31 Score=37.51 Aligned_cols=63 Identities=11% Similarity=0.107 Sum_probs=33.0
Q ss_pred CCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 454 DGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 454 Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
++.+||+.. ....|+.+|..+|+...-...............++.++....+ ..++.++..++
T Consensus 278 ~~~~vyv~~---~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~----G~l~~~d~~tG 340 (377)
T TIGR03300 278 DDNRLYVTD---ADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFE----GYLHWLSREDG 340 (377)
T ss_pred eCCEEEEEC---CCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCC----CEEEEEECCCC
Confidence 456677653 3346899999899765322111111111222345655554322 24777776544
No 486
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=89.82 E-value=39 Score=38.07 Aligned_cols=60 Identities=18% Similarity=0.252 Sum_probs=33.1
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEE
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 225 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~ 225 (789)
+.+...+|-| |+.+++...++ +....|+ +++.... .+-.+..+.| ....|+|+..-++..
T Consensus 101 nAifDl~wap-ge~~lVsasGD----sT~r~Wdvk~s~l~G~-~~~~GH~~Sv------kS~cf~~~n~~vF~t 162 (720)
T KOG0321|consen 101 NAIFDLKWAP-GESLLVSASGD----STIRPWDVKTSRLVGG-RLNLGHTGSV------KSECFMPTNPAVFCT 162 (720)
T ss_pred ceeEeeccCC-CceeEEEccCC----ceeeeeeeccceeecc-eeeccccccc------chhhhccCCCcceee
Confidence 4578889999 77665544333 3445552 2222221 1122333444 788899998755443
No 487
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=89.62 E-value=0.55 Score=47.27 Aligned_cols=52 Identities=23% Similarity=0.264 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhC-----CCceeEEEEeCCcc
Q 003886 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-----PDKFVAAAARNPLC 706 (789)
Q Consensus 653 ~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~-----p~~~~a~v~~~pv~ 706 (789)
+++...+..++++ ....+|.++|||+||.+|..++... +..+.+....+|-.
T Consensus 112 ~~~~~~~~~~~~~--~p~~~i~vtGHSLGGaiA~l~a~~l~~~~~~~~i~~~tFg~P~v 168 (229)
T cd00519 112 NQVLPELKSALKQ--YPDYKIIVTGHSLGGALASLLALDLRLRGPGSDVTVYTFGQPRV 168 (229)
T ss_pred HHHHHHHHHHHhh--CCCceEEEEccCHHHHHHHHHHHHHHhhCCCCceEEEEeCCCCC
Confidence 3444445544444 3467899999999999999877642 33567777777654
No 488
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=89.26 E-value=38 Score=37.12 Aligned_cols=63 Identities=13% Similarity=0.069 Sum_probs=32.5
Q ss_pred CCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 454 DGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 454 Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
++.+||+... ...|+.+|..+|+...-...............++.+++.. .. ..++.++..++
T Consensus 293 ~~~~vy~~~~---~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~-~~---G~l~~ld~~tG 355 (394)
T PRK11138 293 DGGRIYLVDQ---NDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGD-SE---GYLHWINREDG 355 (394)
T ss_pred ECCEEEEEcC---CCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEe-CC---CEEEEEECCCC
Confidence 4556877643 3469999999997643222111011111122355555433 22 34777776654
No 489
>PLN02606 palmitoyl-protein thioesterase
Probab=89.20 E-value=3.9 Score=42.20 Aligned_cols=103 Identities=18% Similarity=0.204 Sum_probs=59.0
Q ss_pred CCCcEEEEEcCCCCCCCchhhHHHHHHHHH-CCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCC
Q 003886 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~-~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (789)
.+.|+| +.||-+.+.....+....+.+.+ .|+-+..+. .|. +. ...+.....+.+..+.+.+.+.+..
T Consensus 25 ~~~PvV-iwHGlgD~~~~~~~~~~~~~i~~~~~~pg~~v~-ig~---~~------~~s~~~~~~~Qv~~vce~l~~~~~L 93 (306)
T PLN02606 25 LSVPFV-LFHGFGGECSNGKVSNLTQFLINHSGYPGTCVE-IGN---GV------QDSLFMPLRQQASIACEKIKQMKEL 93 (306)
T ss_pred CCCCEE-EECCCCcccCCchHHHHHHHHHhCCCCCeEEEE-ECC---Cc------ccccccCHHHHHHHHHHHHhcchhh
Confidence 345655 56997654444455555666642 366555554 231 11 0111111123444455555543333
Q ss_pred CCccEEEEEcCccHHHHHHHHHhCCC--ceeEEEEeCC
Q 003886 669 NPSKVTVVGGSHGGFLTTHLIGQAPD--KFVAAAARNP 704 (789)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~~~~~p~--~~~a~v~~~p 704 (789)
. +-+.++|+|.||.++=.++.+.|+ .++-.|..++
T Consensus 94 ~-~G~naIGfSQGglflRa~ierc~~~p~V~nlISlgg 130 (306)
T PLN02606 94 S-EGYNIVAESQGNLVARGLIEFCDNAPPVINYVSLGG 130 (306)
T ss_pred c-CceEEEEEcchhHHHHHHHHHCCCCCCcceEEEecC
Confidence 3 459999999999999999988876 4777776654
No 490
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=89.12 E-value=26 Score=35.12 Aligned_cols=38 Identities=26% Similarity=0.273 Sum_probs=26.3
Q ss_pred CCCCccCcceecCCCCE-EEEEecCCCCCCCCccccceeEEeecCCCCC
Q 003886 369 ESISSAFFPRFSPDGKF-LVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (789)
Q Consensus 369 ~~~~~~~~p~~SpDG~~-la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~ 416 (789)
.+.|......|||-|-. |+|.+.. ...+++.|+.+...
T Consensus 248 ~hnGa~R~c~Fsl~g~lDLLf~sEh----------fs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 248 HHNGAFRVCRFSLYGLLDLLFISEH----------FSRVHVVDTRNYVN 286 (344)
T ss_pred CCCCceEEEEecCCCcceEEEEecC----------cceEEEEEcccCce
Confidence 35778889999986642 5666643 34689999877544
No 491
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=89.09 E-value=2 Score=46.76 Aligned_cols=112 Identities=20% Similarity=0.175 Sum_probs=72.9
Q ss_pred CCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCc-EEEEEcCCCCCCCCchhhccCCCCCCcccH-HHHHHHHHHHHHc
Q 003886 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGY-SLLIVNYRGSLGFGEEALQSLPGKVGSQDV-NDVLTAIDHVIDM 665 (789)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy-~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~-~D~~~~i~~l~~~ 665 (789)
..-|.|+.|+.-|.-. ...|.. +-.+...|. ..+.-|.|--+ .+| -.|..+. +.+.+.|+..++.
T Consensus 285 GD~KPPL~VYFSGyR~---aEGFEg-y~MMk~Lg~PfLL~~DpRleG---GaF------YlGs~eyE~~I~~~I~~~L~~ 351 (511)
T TIGR03712 285 GDFKPPLNVYFSGYRP---AEGFEG-YFMMKRLGAPFLLIGDPRLEG---GAF------YLGSDEYEQGIINVIQEKLDY 351 (511)
T ss_pred cCCCCCeEEeeccCcc---cCcchh-HHHHHhcCCCeEEeecccccc---cee------eeCcHHHHHHHHHHHHHHHHH
Confidence 4557899999988332 223321 113344554 45677888522 233 1233333 2455556555554
Q ss_pred CCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcC
Q 003886 666 GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT 714 (789)
Q Consensus 666 ~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~ 714 (789)
-..+.+.+.+.|-|||.+-|+.++++. .-+|+|+.-|..++-.+...
T Consensus 352 LgF~~~qLILSGlSMGTfgAlYYga~l--~P~AIiVgKPL~NLGtiA~n 398 (511)
T TIGR03712 352 LGFDHDQLILSGLSMGTFGALYYGAKL--SPHAIIVGKPLVNLGTIASR 398 (511)
T ss_pred hCCCHHHeeeccccccchhhhhhcccC--CCceEEEcCcccchhhhhcc
Confidence 447899999999999999999999875 36899999999988665443
No 492
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=88.81 E-value=9.3 Score=42.54 Aligned_cols=80 Identities=14% Similarity=0.110 Sum_probs=50.5
Q ss_pred CccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCcc
Q 003886 372 SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW 451 (789)
Q Consensus 372 ~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~w 451 (789)
..+..-++||+-++|+....++ .|.+||...+-.. .+.. .+ -+..++|
T Consensus 260 s~v~~ca~sp~E~kLvlGC~Dg-----------SiiLyD~~~~~t~-~~ka--~~------------------~P~~iaW 307 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDG-----------SIILYDTTRGVTL-LAKA--EF------------------IPTLIAW 307 (545)
T ss_pred CcceEEecCcccceEEEEecCC-----------eEEEEEcCCCeee-eeee--cc------------------cceEEEE
Confidence 3567789999999999988764 5899997553221 1100 11 1235689
Q ss_pred ccCCCEEEEEEEeCCeEEEEEEECCCCcEEEec
Q 003886 452 LSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 484 (789)
Q Consensus 452 s~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt 484 (789)
.|||. +++.++..|...+|-+-++.=+.+-+.
T Consensus 308 Hp~ga-i~~V~s~qGelQ~FD~ALspi~~qLls 339 (545)
T PF11768_consen 308 HPDGA-IFVVGSEQGELQCFDMALSPIKMQLLS 339 (545)
T ss_pred cCCCc-EEEEEcCCceEEEEEeecCccceeecc
Confidence 99997 556666777777776555443443333
No 493
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=88.70 E-value=29 Score=35.23 Aligned_cols=78 Identities=10% Similarity=0.112 Sum_probs=46.5
Q ss_pred cccCCCCCccccCCCEEEEEEEeCCeEEEEEEECC-CCc-EEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEe
Q 003886 442 YSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS-SGE-LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 519 (789)
Q Consensus 442 ~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~-tg~-~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~ 519 (789)
|+..+.++.|..=.-.++.+++-+.+..||-+... .|. .++|...+..+....|..++..++++...... +..+|
T Consensus 149 ~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGS---vRmFD 225 (364)
T KOG0290|consen 149 FCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGS---VRMFD 225 (364)
T ss_pred cCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCc---EEEEE
Confidence 34456788897644446666666777777765532 122 34555555455667788877777777666555 44455
Q ss_pred ecc
Q 003886 520 FVD 522 (789)
Q Consensus 520 ~~~ 522 (789)
+..
T Consensus 226 LR~ 228 (364)
T KOG0290|consen 226 LRS 228 (364)
T ss_pred ecc
Confidence 543
No 494
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=88.51 E-value=14 Score=37.74 Aligned_cols=93 Identities=14% Similarity=0.143 Sum_probs=51.3
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhh
Q 003886 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (789)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (789)
..--+||+++|++..+. +..+.......-.|.-+ |+.++.++. ...++|+.
T Consensus 294 RTAnlwDVEtge~v~~L-tGHd~ELtHcstHptQr-----LVvTsSrDt--------------TFRLWDFR--------- 344 (481)
T KOG0300|consen 294 RTANLWDVETGEVVNIL-TGHDSELTHCSTHPTQR-----LVVTSSRDT--------------TFRLWDFR--------- 344 (481)
T ss_pred ccceeeeeccCceeccc-cCcchhccccccCCcce-----EEEEeccCc--------------eeEeccch---------
Confidence 44567999999987662 22222334445556544 777764332 34445542
Q ss_pred hhhcCCCCCCC-eeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCC
Q 003886 353 ELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (789)
Q Consensus 353 ~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~ 413 (789)
+.-. +.....+...+.+..|.-|.+ ++..+.+ ..+.+||+..
T Consensus 345 -------eaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDD-----------rTvKvWdLrN 387 (481)
T KOG0300|consen 345 -------EAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDD-----------RTVKVWDLRN 387 (481)
T ss_pred -------hhcceeeeecccccceeEEEEecCCc-eeecCCC-----------ceEEEeeecc
Confidence 1222 223334455677888887765 4433322 3588888854
No 495
>PRK13615 lipoprotein LpqB; Provisional
Probab=87.98 E-value=27 Score=39.80 Aligned_cols=158 Identities=9% Similarity=-0.038 Sum_probs=86.0
Q ss_pred EEEEeCCCCCeEEEEecCCCCCCeEEEEecCC-ceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCC
Q 003886 157 SAVVPSPSGSKLLVVRNPENESPIQFELWSQS-QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235 (789)
Q Consensus 157 ~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~ 235 (789)
.+++.|+||+.+|++... ..+.+...+ ....+.. .... ..++|.++| .+..+ .+..
T Consensus 337 ~s~avS~dg~~~A~v~~~-----~~l~vg~~~~~~~~~~~-~~~L----------t~PS~d~~g-~vWtv-~~g~----- 393 (557)
T PRK13615 337 DAATLSADGRQAAVRNAS-----GVWSVGDGDRDAVLLDT-RPGL----------VAPSLDAQG-YVWST-PASD----- 393 (557)
T ss_pred ccceEcCCCceEEEEcCC-----ceEEEecCCCcceeecc-CCcc----------ccCcCcCCC-CEEEE-eCCC-----
Confidence 678999999999999432 245555333 3333322 2222 689999998 55543 2210
Q ss_pred ccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEecc-CCCCCCccceEEEeeCCCCCccEEE
Q 003886 236 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEGLHQYLV 314 (789)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~-~~~~~~~~~~~~wSPDg~~~~~~l~ 314 (789)
...+... -.+|+...+. .......+..+..|+||-+ ++
T Consensus 394 ------------------------------------~~~l~~~-~~~G~~~~v~v~~~~~~~I~~lrvSrDG~R----~A 432 (557)
T PRK13615 394 ------------------------------------PRGLVAW-GPDGVGHPVAVSWTATGRVVSLEVARDGAR----VL 432 (557)
T ss_pred ------------------------------------ceEEEEe-cCCCceEEeeccccCCCeeEEEEeCCCccE----EE
Confidence 1112221 1233333321 0112235778899999999 88
Q ss_pred EEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCC-------CeeecCCCCCccCcceecCCCCEEE
Q 003886 315 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-------PVVNLTESISSAFFPRFSPDGKFLV 387 (789)
Q Consensus 315 f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-------~~~~Lt~~~~~~~~p~~SpDG~~la 387 (789)
.+....+. .+|++.-+.. .++ ..+.+....+...+..|..|++ |+
T Consensus 433 vi~~~~g~------------~~V~va~V~R---------------~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~-la 484 (557)
T PRK13615 433 VQLETGAG------------PQLLVASIVR---------------DGGVPTSLTTTPLELLASPGTPLDATWVDELD-VA 484 (557)
T ss_pred EEEecCCC------------CEEEEEEEEe---------------CCCcceEeeeccEEcccCcCcceeeEEcCCCE-EE
Confidence 87643321 2455544310 122 2233333344778899999887 55
Q ss_pred EEecCCCCCCCCccccceeEEeecCC
Q 003886 388 FLSAKSSVDSGAHSATDSLHRIDWPT 413 (789)
Q Consensus 388 ~~s~~~~~~~g~~~~~~~L~~~d~~~ 413 (789)
.+.... | +..+++++.+.+
T Consensus 485 Vl~~~~----~---~~~~v~~v~v~g 503 (557)
T PRK13615 485 TLTLAP----D---GERQVELHQVGG 503 (557)
T ss_pred EEeccC----C---CCceEEEEECCC
Confidence 555322 1 234577777764
No 496
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=87.90 E-value=28 Score=36.21 Aligned_cols=16 Identities=31% Similarity=0.601 Sum_probs=12.7
Q ss_pred ceEEEEEccCCceEec
Q 003886 273 PSLFVININSGEVQAV 288 (789)
Q Consensus 273 ~~l~v~d~~~g~~~~l 288 (789)
..|.|+|+.+|+..++
T Consensus 88 ~glIV~dl~~~~s~Rv 103 (287)
T PF03022_consen 88 PGLIVYDLATGKSWRV 103 (287)
T ss_dssp CEEEEEETTTTEEEEE
T ss_pred CcEEEEEccCCcEEEE
Confidence 5788888888887666
No 497
>KOG1283 consensus Serine carboxypeptidases [Posttranslational modification, protein turnover, chaperones]
Probab=87.83 E-value=4.5 Score=41.48 Aligned_cols=134 Identities=16% Similarity=0.144 Sum_probs=80.6
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCch--hhHHH-----------HHHHHHCCcEEEEEcCCCCCCCCch
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS--SYSKS-----------LAFLSSVGYSLLIVNYRGSLGFGEE 638 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~--~~~~~-----------~~~la~~Gy~V~~~d~rGs~G~G~~ 638 (789)
++..+..|+|..... -....|+.+++.|||++.... .|... ...|.. ..++.+|.+-..||.--
T Consensus 12 ~~a~~F~wly~~~~~-~ks~~pl~lwlqGgpGaSstG~GNFeE~GPl~~~~~~r~~TWlk~--adllfvDnPVGaGfSyV 88 (414)
T KOG1283|consen 12 TGAHMFWWLYYATAN-VKSERPLALWLQGGPGASSTGFGNFEELGPLDLDGSPRDWTWLKD--ADLLFVDNPVGAGFSYV 88 (414)
T ss_pred cCceEEEEEeeeccc-cccCCCeeEEecCCCCCCCcCccchhhcCCcccCCCcCCchhhhh--ccEEEecCCCcCceeee
Confidence 456678888875422 235689999999999875322 22211 112222 46788887733444321
Q ss_pred hhccCCCCCCcccHHHHHHHHHHHHH-cCCCCCccEEEEEcCccHHHHHHHHHhCC---------CceeEEEEeCCccch
Q 003886 639 ALQSLPGKVGSQDVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQAP---------DKFVAAAARNPLCNL 708 (789)
Q Consensus 639 ~~~~~~~~~~~~~~~D~~~~i~~l~~-~~~~d~~rv~l~G~S~GG~~a~~~~~~~p---------~~~~a~v~~~pv~~~ 708 (789)
.....+..-..+-..|+.+.++.+.. ++....-+..|+-.||||-++...+...- -.|.++++..+.+..
T Consensus 89 dg~~~Y~~~~~qia~Dl~~llk~f~~~h~e~~t~P~~If~ESYGGKma~k~al~l~~aIk~G~i~~nf~~VaLGDSWISP 168 (414)
T KOG1283|consen 89 DGSSAYTTNNKQIALDLVELLKGFFTNHPEFKTVPLYIFCESYGGKMAAKFALELDDAIKRGEIKLNFIGVALGDSWISP 168 (414)
T ss_pred cCcccccccHHHHHHHHHHHHHHHHhcCccccccceEEEEhhcccchhhhhhhhHHHHHhcCceeecceeEEccCcccCh
Confidence 11111112222224577777766665 46677788999999999999988765321 246677777665543
No 498
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=87.79 E-value=1.1 Score=50.32 Aligned_cols=75 Identities=21% Similarity=0.242 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCC-CCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHH
Q 003886 609 SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG-KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTH 687 (789)
Q Consensus 609 ~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~-~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~ 687 (789)
.|...++.|++.||. -.|++| ..-+|+.+... .....-+..+...|+.+.+. -...+|.|+||||||.+++.
T Consensus 157 vw~kLIe~L~~iGY~--~~nL~g---APYDWRls~~~le~rd~YF~rLK~lIE~ay~~--nggkKVVLV~HSMGglv~ly 229 (642)
T PLN02517 157 VWAVLIANLARIGYE--EKNMYM---AAYDWRLSFQNTEVRDQTLSRLKSNIELMVAT--NGGKKVVVVPHSMGVLYFLH 229 (642)
T ss_pred eHHHHHHHHHHcCCC--CCceee---cccccccCccchhhhhHHHHHHHHHHHHHHHH--cCCCeEEEEEeCCchHHHHH
Confidence 356788999999997 456555 22334322110 00011134555666665554 23579999999999999998
Q ss_pred HHH
Q 003886 688 LIG 690 (789)
Q Consensus 688 ~~~ 690 (789)
.+.
T Consensus 230 FL~ 232 (642)
T PLN02517 230 FMK 232 (642)
T ss_pred HHH
Confidence 765
No 499
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=87.72 E-value=2.6 Score=35.05 Aligned_cols=54 Identities=13% Similarity=0.032 Sum_probs=40.4
Q ss_pred CCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecC
Q 003886 333 RPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 412 (789)
Q Consensus 333 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~ 412 (789)
....|+.+|. .+++.+.|-.+.......+.|||++.|++...- ..+|+++-+.
T Consensus 35 ~~GRll~ydp-----------------~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~----------~~Ri~rywl~ 87 (89)
T PF03088_consen 35 PTGRLLRYDP-----------------STKETTVLLDGLYFPNGVALSPDESFVLVAETG----------RYRILRYWLK 87 (89)
T ss_dssp --EEEEEEET-----------------TTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGG----------GTEEEEEESS
T ss_pred CCcCEEEEEC-----------------CCCeEEEehhCCCccCeEEEcCCCCEEEEEecc----------CceEEEEEEe
Confidence 3457999998 888888887777778889999999998877643 4578888764
Q ss_pred C
Q 003886 413 T 413 (789)
Q Consensus 413 ~ 413 (789)
+
T Consensus 88 G 88 (89)
T PF03088_consen 88 G 88 (89)
T ss_dssp S
T ss_pred C
Confidence 3
No 500
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=87.32 E-value=74 Score=38.16 Aligned_cols=66 Identities=20% Similarity=0.253 Sum_probs=39.0
Q ss_pred EEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCC--CccccccCCCcccceeecCCCCEEEEEeecC
Q 003886 159 VVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQ--TVHGSVYADGWFEGISWNSDETLIAYVAEEP 229 (789)
Q Consensus 159 ~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~ 229 (789)
-..|||.+++++.++... .|.-... ....+-.+.. ..|+..+.++.+..+.|||.|++|+|+.+..
T Consensus 102 ~~~s~d~~~~~~~~~~~~----~~rhs~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~wsp~~~~l~yv~~~n 169 (755)
T KOG2100|consen 102 DLISPDRKYILLGRNYKK----RFRHSYT-AKYHLYDLNTGEKLHPPEYEGSKIQYASWSPLGNDLAYVLHNN 169 (755)
T ss_pred cccChhhhhheeccCccc----ccceeeE-EEEEEEEcCCCCcccCcccCCCeeEEEEEcCCCCEEEEEEecc
Confidence 378999999998776431 1111100 0111111111 2345555555668899999999999998754
Done!