Query 003887
Match_columns 789
No_of_seqs 556 out of 3649
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 13:47:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003887.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003887hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0339 ATP-dependent RNA heli 100.0 2E-125 3E-130 998.8 49.5 698 1-728 1-715 (731)
2 KOG0331 ATP-dependent RNA heli 100.0 4.4E-80 9.4E-85 680.0 36.2 427 180-608 16-478 (519)
3 KOG0336 ATP-dependent RNA heli 100.0 1.5E-78 3.3E-83 627.3 31.6 439 175-616 162-610 (629)
4 KOG0334 RNA helicase [RNA proc 100.0 1.5E-77 3.3E-82 688.1 34.6 438 169-607 308-749 (997)
5 KOG0333 U5 snRNP-like RNA heli 100.0 1E-76 2.2E-81 631.8 35.6 491 102-604 128-651 (673)
6 PTZ00110 helicase; Provisional 100.0 5.9E-73 1.3E-77 654.7 50.3 438 169-608 73-514 (545)
7 KOG0341 DEAD-box protein abstr 100.0 7.5E-74 1.6E-78 588.9 17.9 425 178-606 123-557 (610)
8 PLN00206 DEAD-box ATP-dependen 100.0 1.4E-68 3.1E-73 616.4 47.3 482 107-606 9-503 (518)
9 KOG0330 ATP-dependent RNA heli 100.0 1E-68 2.2E-73 553.8 33.5 366 223-596 59-425 (476)
10 KOG0335 ATP-dependent RNA heli 100.0 3E-67 6.6E-72 568.6 32.2 393 212-606 61-472 (482)
11 KOG0338 ATP-dependent RNA heli 100.0 8.1E-67 1.8E-71 553.8 27.9 363 225-591 181-546 (691)
12 COG0513 SrmB Superfamily II DN 100.0 3.6E-65 7.8E-70 584.6 41.1 364 225-593 29-396 (513)
13 PRK10590 ATP-dependent RNA hel 100.0 2.8E-62 6.1E-67 557.2 44.3 364 226-592 2-366 (456)
14 KOG0328 Predicted ATP-dependen 100.0 5.3E-63 1.2E-67 491.2 28.5 376 221-603 23-398 (400)
15 PRK04537 ATP-dependent RNA hel 100.0 7.8E-61 1.7E-65 555.6 46.3 365 225-592 9-378 (572)
16 PRK04837 ATP-dependent RNA hel 100.0 1.1E-59 2.3E-64 532.0 42.8 366 225-593 8-377 (423)
17 KOG0342 ATP-dependent RNA heli 100.0 3.4E-60 7.3E-65 504.5 30.4 361 224-587 81-446 (543)
18 KOG0340 ATP-dependent RNA heli 100.0 1.7E-60 3.8E-65 487.5 27.1 392 223-621 5-420 (442)
19 PRK11776 ATP-dependent RNA hel 100.0 6.1E-58 1.3E-62 523.2 41.3 358 225-591 4-362 (460)
20 PRK11634 ATP-dependent RNA hel 100.0 5.9E-58 1.3E-62 534.3 42.0 358 224-589 5-363 (629)
21 KOG0345 ATP-dependent RNA heli 100.0 7.5E-58 1.6E-62 482.9 34.6 357 225-584 4-370 (567)
22 PRK11192 ATP-dependent RNA hel 100.0 7.8E-57 1.7E-61 510.8 42.4 363 226-591 2-365 (434)
23 KOG0326 ATP-dependent RNA heli 100.0 3.7E-59 8E-64 470.6 18.6 366 225-599 85-450 (459)
24 KOG0343 RNA Helicase [RNA proc 100.0 3.3E-57 7.2E-62 484.4 30.3 375 201-586 50-431 (758)
25 KOG0348 ATP-dependent RNA heli 100.0 6.6E-57 1.4E-61 480.9 29.1 363 224-588 135-564 (708)
26 KOG0346 RNA helicase [RNA proc 100.0 1.4E-56 3.1E-61 469.1 28.5 367 225-592 19-424 (569)
27 PRK01297 ATP-dependent RNA hel 100.0 9.4E-55 2E-59 498.5 43.3 379 222-603 84-469 (475)
28 KOG0347 RNA helicase [RNA proc 100.0 2.2E-56 4.8E-61 478.2 22.5 372 220-595 176-587 (731)
29 PTZ00424 helicase 45; Provisio 100.0 1E-53 2.2E-58 480.8 39.5 368 224-598 27-394 (401)
30 KOG0344 ATP-dependent RNA heli 100.0 2.3E-54 5.1E-59 470.2 26.3 402 204-607 111-524 (593)
31 KOG0332 ATP-dependent RNA heli 100.0 2.9E-52 6.2E-57 429.2 29.7 371 222-602 87-469 (477)
32 KOG0337 ATP-dependent RNA heli 100.0 1.2E-52 2.5E-57 438.0 19.0 361 224-590 20-380 (529)
33 KOG0327 Translation initiation 100.0 5.5E-52 1.2E-56 431.9 23.2 367 224-600 25-392 (397)
34 KOG4284 DEAD box protein [Tran 100.0 2.1E-50 4.5E-55 437.8 23.2 356 217-580 17-381 (980)
35 TIGR03817 DECH_helic helicase/ 100.0 1.6E-47 3.4E-52 455.1 38.7 344 231-590 20-400 (742)
36 KOG0350 DEAD-box ATP-dependent 100.0 7E-48 1.5E-52 409.6 27.5 353 233-592 145-554 (620)
37 PLN03137 ATP-dependent DNA hel 100.0 8.6E-46 1.9E-50 436.6 37.5 344 226-588 436-797 (1195)
38 TIGR00614 recQ_fam ATP-depende 100.0 3.9E-45 8.5E-50 417.7 35.7 327 242-589 6-344 (470)
39 PRK11057 ATP-dependent DNA hel 100.0 4.5E-43 9.8E-48 411.1 37.4 333 232-587 9-352 (607)
40 TIGR00580 mfd transcription-re 100.0 2.1E-42 4.5E-47 414.8 40.6 400 193-630 390-816 (926)
41 PRK13767 ATP-dependent helicas 100.0 1.3E-42 2.8E-47 420.9 37.4 342 232-576 18-396 (876)
42 PRK02362 ski2-like helicase; P 100.0 7.9E-43 1.7E-47 418.8 35.1 338 226-579 2-398 (737)
43 PRK10689 transcription-repair 100.0 8.4E-42 1.8E-46 417.7 42.6 402 193-631 539-966 (1147)
44 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.6E-42 3.6E-47 404.4 32.6 315 243-577 12-390 (844)
45 TIGR01389 recQ ATP-dependent D 100.0 4.5E-42 9.7E-47 403.5 34.3 326 239-588 4-341 (591)
46 PRK00254 ski2-like helicase; P 100.0 4.1E-42 9E-47 411.5 34.4 339 226-579 2-389 (720)
47 PRK10917 ATP-dependent DNA hel 100.0 3.4E-41 7.4E-46 399.3 40.6 347 234-606 248-617 (681)
48 TIGR00643 recG ATP-dependent D 100.0 6.6E-41 1.4E-45 394.4 39.4 360 235-630 224-607 (630)
49 KOG0329 ATP-dependent RNA heli 100.0 3.5E-43 7.6E-48 345.1 14.0 333 225-600 42-378 (387)
50 PRK01172 ski2-like helicase; P 100.0 2.8E-40 6.1E-45 393.9 32.8 333 226-578 2-378 (674)
51 PRK09401 reverse gyrase; Revie 100.0 2.7E-38 5.9E-43 387.7 33.9 302 239-564 72-431 (1176)
52 COG1201 Lhr Lhr-like helicases 100.0 8E-38 1.7E-42 363.3 31.1 341 231-577 7-361 (814)
53 PHA02653 RNA helicase NPH-II; 100.0 6.8E-38 1.5E-42 364.3 29.6 311 250-580 167-516 (675)
54 PRK09751 putative ATP-dependen 100.0 1.7E-37 3.7E-42 381.2 33.6 303 267-572 1-379 (1490)
55 KOG0349 Putative DEAD-box RNA 100.0 4.1E-38 8.9E-43 328.6 18.4 278 299-577 287-614 (725)
56 PRK14701 reverse gyrase; Provi 100.0 6.6E-37 1.4E-41 382.5 32.0 328 236-586 68-464 (1638)
57 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.2E-36 2.5E-41 361.9 29.5 305 251-581 6-339 (819)
58 COG0514 RecQ Superfamily II DN 100.0 3.3E-36 7.2E-41 338.5 30.1 332 238-590 7-349 (590)
59 PRK12898 secA preprotein trans 100.0 3.4E-36 7.4E-41 344.8 29.5 317 246-580 102-588 (656)
60 COG1111 MPH1 ERCC4-like helica 100.0 1.1E-35 2.4E-40 319.9 30.6 324 245-579 13-482 (542)
61 PHA02558 uvsW UvsW helicase; P 100.0 3.5E-36 7.7E-41 345.9 28.6 307 245-573 112-448 (501)
62 TIGR01587 cas3_core CRISPR-ass 100.0 3.9E-36 8.4E-41 333.0 28.0 301 264-578 1-336 (358)
63 PRK11664 ATP-dependent RNA hel 100.0 2.3E-36 5E-41 360.2 27.6 303 252-580 10-341 (812)
64 TIGR01054 rgy reverse gyrase. 100.0 4.5E-35 9.8E-40 359.9 32.6 292 236-550 67-410 (1171)
65 COG1200 RecG RecG-like helicas 100.0 1.1E-33 2.4E-38 316.8 35.8 360 234-630 249-632 (677)
66 COG1202 Superfamily II helicas 100.0 3.8E-35 8.2E-40 316.5 22.1 338 227-578 196-553 (830)
67 PRK09200 preprotein translocas 100.0 2.9E-34 6.3E-39 335.5 30.1 320 244-581 76-544 (790)
68 PRK13766 Hef nuclease; Provisi 100.0 1.1E-33 2.4E-38 343.1 36.5 324 245-579 13-480 (773)
69 COG1204 Superfamily II helicas 100.0 2.5E-34 5.4E-39 338.7 29.2 335 231-577 15-407 (766)
70 TIGR03714 secA2 accessory Sec 100.0 1.2E-33 2.5E-38 327.3 29.4 320 247-581 68-540 (762)
71 TIGR00963 secA preprotein tran 100.0 2.5E-33 5.4E-38 322.6 27.4 318 246-581 55-520 (745)
72 KOG0354 DEAD-box like helicase 100.0 1.5E-32 3.3E-37 311.9 27.7 321 246-578 61-529 (746)
73 TIGR03158 cas3_cyano CRISPR-as 100.0 4.4E-32 9.6E-37 298.9 29.5 290 251-562 1-357 (357)
74 TIGR00603 rad25 DNA repair hel 100.0 8.7E-32 1.9E-36 311.9 24.5 321 246-594 254-625 (732)
75 PRK11131 ATP-dependent RNA hel 100.0 6.2E-31 1.3E-35 318.3 30.4 303 251-581 78-414 (1294)
76 PRK04914 ATP-dependent helicas 100.0 1.5E-30 3.4E-35 311.3 31.4 319 246-576 151-601 (956)
77 KOG0952 DNA/RNA helicase MER3/ 100.0 2.6E-30 5.7E-35 295.7 27.3 333 243-583 106-496 (1230)
78 COG1205 Distinct helicase fami 100.0 8.8E-30 1.9E-34 304.3 32.0 334 233-576 56-420 (851)
79 KOG0352 ATP-dependent DNA heli 100.0 6.3E-30 1.4E-34 267.6 25.2 335 235-588 6-372 (641)
80 KOG0351 ATP-dependent DNA heli 100.0 1.4E-29 3.1E-34 300.2 28.7 328 240-588 257-602 (941)
81 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.4E-29 3E-34 307.9 27.0 304 253-580 73-406 (1283)
82 KOG0385 Chromatin remodeling c 100.0 1.2E-29 2.7E-34 281.9 24.0 317 246-579 166-600 (971)
83 PRK05580 primosome assembly pr 100.0 2E-28 4.2E-33 289.6 35.0 314 246-581 143-552 (679)
84 COG1197 Mfd Transcription-repa 100.0 3.2E-28 6.9E-33 286.7 33.9 403 193-631 533-960 (1139)
85 cd00268 DEADc DEAD-box helicas 100.0 7.2E-29 1.6E-33 252.4 24.9 202 227-431 1-202 (203)
86 PLN03142 Probable chromatin-re 100.0 5.9E-29 1.3E-33 298.5 28.0 320 246-578 168-599 (1033)
87 KOG0353 ATP-dependent DNA heli 100.0 1.2E-27 2.6E-32 246.8 25.2 336 229-581 75-470 (695)
88 PRK09694 helicase Cas3; Provis 100.0 8.5E-27 1.9E-31 277.7 34.5 312 245-566 284-664 (878)
89 COG1061 SSL2 DNA or RNA helica 100.0 7E-28 1.5E-32 272.1 23.0 294 246-564 35-376 (442)
90 PRK13104 secA preprotein trans 100.0 3.6E-27 7.7E-32 275.2 27.3 317 247-581 82-590 (896)
91 KOG0384 Chromodomain-helicase 100.0 3.4E-28 7.4E-33 282.2 16.8 319 246-579 369-812 (1373)
92 PRK12899 secA preprotein trans 100.0 5.8E-27 1.3E-31 272.7 27.1 181 193-385 31-228 (970)
93 KOG0387 Transcription-coupled 100.0 6.4E-27 1.4E-31 261.8 26.2 325 246-587 204-670 (923)
94 TIGR00595 priA primosomal prot 100.0 2.1E-26 4.5E-31 263.3 29.3 292 266-578 1-381 (505)
95 KOG0951 RNA helicase BRR2, DEA 100.0 7.9E-27 1.7E-31 269.8 25.0 345 231-583 295-707 (1674)
96 PRK12904 preprotein translocas 99.9 2.8E-26 6E-31 267.7 26.5 317 247-581 81-576 (830)
97 KOG1002 Nucleotide excision re 99.9 9.8E-27 2.1E-31 247.3 19.7 359 182-577 143-747 (791)
98 PRK12906 secA preprotein trans 99.9 6.3E-26 1.4E-30 263.8 24.4 318 246-581 79-556 (796)
99 KOG0947 Cytoplasmic exosomal R 99.9 1.6E-25 3.5E-30 253.7 26.4 310 247-578 297-723 (1248)
100 KOG2340 Uncharacterized conser 99.9 2.9E-25 6.4E-30 238.5 20.7 344 244-588 213-678 (698)
101 KOG0948 Nuclear exosomal RNA h 99.9 9.5E-26 2.1E-30 250.0 16.6 310 247-578 129-539 (1041)
102 PRK11448 hsdR type I restricti 99.9 3.2E-24 6.9E-29 262.6 28.9 303 246-565 412-801 (1123)
103 KOG0950 DNA polymerase theta/e 99.9 1E-24 2.2E-29 249.6 20.5 344 231-588 207-621 (1008)
104 KOG0392 SNF2 family DNA-depend 99.9 4.1E-24 8.8E-29 247.3 24.0 325 246-578 974-1454(1549)
105 PRK13107 preprotein translocas 99.9 3.2E-24 6.9E-29 249.8 23.3 316 247-580 82-593 (908)
106 PF00270 DEAD: DEAD/DEAH box h 99.9 6.3E-24 1.4E-28 209.1 19.4 166 249-420 1-169 (169)
107 COG4098 comFA Superfamily II D 99.9 1.9E-22 4.1E-27 207.5 28.8 306 246-580 96-418 (441)
108 COG4581 Superfamily II RNA hel 99.9 1.4E-23 3E-28 247.8 23.4 310 247-576 119-535 (1041)
109 KOG0389 SNF2 family DNA-depend 99.9 4.1E-24 8.8E-29 239.2 16.7 322 247-580 399-890 (941)
110 KOG0391 SNF2 family DNA-depend 99.9 7.9E-23 1.7E-27 234.0 25.1 125 455-579 1260-1388(1958)
111 COG1643 HrpA HrpA-like helicas 99.9 1.3E-22 2.9E-27 238.4 22.0 309 250-580 53-389 (845)
112 PF06862 DUF1253: Protein of u 99.9 8.5E-22 1.8E-26 216.7 25.6 292 297-588 36-425 (442)
113 KOG0926 DEAH-box RNA helicase 99.9 2.2E-22 4.7E-27 224.6 18.4 306 252-578 261-704 (1172)
114 KOG0922 DEAH-box RNA helicase 99.9 1.8E-21 3.8E-26 216.8 22.1 306 250-581 54-393 (674)
115 KOG0390 DNA repair protein, SN 99.9 4.7E-21 1E-25 220.9 24.6 325 246-577 237-706 (776)
116 COG1203 CRISPR-associated heli 99.9 3.5E-21 7.7E-26 230.1 23.4 323 248-578 196-550 (733)
117 KOG0923 mRNA splicing factor A 99.9 7.5E-21 1.6E-25 209.2 20.1 310 246-577 264-605 (902)
118 KOG0924 mRNA splicing factor A 99.9 9.8E-21 2.1E-25 208.4 19.1 312 245-578 354-697 (1042)
119 TIGR00631 uvrb excinuclease AB 99.9 6.7E-20 1.5E-24 214.7 25.4 133 454-588 425-563 (655)
120 KOG0920 ATP-dependent RNA heli 99.9 5.6E-20 1.2E-24 215.4 24.4 314 248-578 174-544 (924)
121 TIGR01407 dinG_rel DnaQ family 99.8 4.6E-19 1E-23 216.1 32.9 345 232-591 231-829 (850)
122 KOG0388 SNF2 family DNA-depend 99.8 4.8E-20 1E-24 203.3 18.6 147 453-606 1026-1175(1185)
123 PRK12900 secA preprotein trans 99.8 7.4E-20 1.6E-24 214.2 20.8 140 452-594 579-731 (1025)
124 KOG0386 Chromatin remodeling c 99.8 1.4E-20 2.9E-25 215.7 13.3 315 246-577 393-837 (1157)
125 COG1110 Reverse gyrase [DNA re 99.8 1.9E-18 4.1E-23 199.3 28.3 288 237-549 72-417 (1187)
126 smart00487 DEXDc DEAD-like hel 99.8 7.6E-19 1.7E-23 175.9 21.9 187 243-435 4-192 (201)
127 KOG1000 Chromatin remodeling p 99.8 1.4E-18 3E-23 186.0 24.6 316 245-578 196-602 (689)
128 COG1198 PriA Primosomal protei 99.8 4.6E-18 9.9E-23 197.7 30.9 318 246-584 197-609 (730)
129 PRK05298 excinuclease ABC subu 99.8 9.3E-19 2E-23 206.6 24.9 148 454-603 429-591 (652)
130 TIGR00348 hsdR type I site-spe 99.8 3.4E-18 7.3E-23 202.6 28.4 299 248-564 239-634 (667)
131 PRK12326 preprotein translocas 99.8 5.9E-18 1.3E-22 193.5 26.1 316 246-580 77-549 (764)
132 COG4096 HsdR Type I site-speci 99.8 1.4E-18 3E-23 198.0 19.3 297 246-565 164-526 (875)
133 COG0556 UvrB Helicase subunit 99.8 6.7E-17 1.5E-21 175.4 25.6 165 403-577 386-556 (663)
134 PRK13103 secA preprotein trans 99.8 1.8E-17 3.9E-22 193.8 21.3 316 247-581 82-594 (913)
135 PRK07246 bifunctional ATP-depe 99.8 2.8E-16 6E-21 189.5 30.2 327 244-591 243-798 (820)
136 KOG0925 mRNA splicing factor A 99.7 2.9E-17 6.3E-22 175.6 16.8 328 224-578 24-387 (699)
137 KOG1123 RNA polymerase II tran 99.7 2.2E-18 4.8E-23 184.4 8.3 310 246-583 301-658 (776)
138 KOG0949 Predicted helicase, DE 99.7 6.7E-17 1.4E-21 184.6 20.6 159 247-415 511-673 (1330)
139 COG4889 Predicted helicase [Ge 99.7 2.3E-17 5E-22 185.8 15.3 359 225-595 140-618 (1518)
140 KOG4439 RNA polymerase II tran 99.7 6E-17 1.3E-21 179.9 16.3 121 469-592 745-869 (901)
141 PRK12903 secA preprotein trans 99.7 2.1E-15 4.5E-20 174.9 26.6 316 247-581 78-542 (925)
142 KOG1015 Transcription regulato 99.7 2.9E-16 6.3E-21 178.1 18.9 122 456-577 1127-1276(1567)
143 cd00079 HELICc Helicase superf 99.7 2.4E-16 5.3E-21 147.8 12.4 119 455-574 12-131 (131)
144 TIGR03117 cas_csf4 CRISPR-asso 99.7 3E-14 6.4E-19 165.0 31.9 116 469-586 469-625 (636)
145 PRK08074 bifunctional ATP-depe 99.7 6.4E-15 1.4E-19 180.7 26.1 123 469-591 751-908 (928)
146 KOG0953 Mitochondrial RNA heli 99.7 1.6E-15 3.5E-20 165.1 16.6 277 263-586 192-484 (700)
147 PF00271 Helicase_C: Helicase 99.7 3.5E-16 7.5E-21 133.7 8.6 78 488-565 1-78 (78)
148 CHL00122 secA preprotein trans 99.6 6E-15 1.3E-19 172.2 21.2 274 247-537 76-491 (870)
149 cd00046 DEXDc DEAD-like helica 99.6 4.7E-15 1E-19 139.6 16.6 144 263-413 1-144 (144)
150 COG0553 HepA Superfamily II DN 99.6 7.8E-15 1.7E-19 181.3 23.2 325 246-579 337-823 (866)
151 PRK12902 secA preprotein trans 99.6 1.6E-13 3.4E-18 160.1 25.0 127 247-385 85-218 (939)
152 KOG4150 Predicted ATP-dependen 99.6 4E-14 8.7E-19 153.7 16.1 348 238-596 277-660 (1034)
153 PF04851 ResIII: Type III rest 99.6 1.9E-14 4.1E-19 143.2 12.5 153 247-415 3-184 (184)
154 COG1199 DinG Rad3-related DNA 99.5 9.7E-13 2.1E-17 157.4 26.0 118 470-590 479-631 (654)
155 smart00490 HELICc helicase sup 99.5 1E-13 2.2E-18 118.7 8.9 81 485-565 2-82 (82)
156 PRK11747 dinG ATP-dependent DN 99.5 1.6E-11 3.5E-16 146.5 29.9 118 470-590 534-688 (697)
157 KOG0951 RNA helicase BRR2, DEA 99.5 6.6E-13 1.4E-17 155.7 16.6 313 247-586 1143-1502(1674)
158 TIGR00604 rad3 DNA repair heli 99.5 2.3E-11 4.9E-16 146.2 29.0 74 244-322 7-84 (705)
159 TIGR02562 cas3_yersinia CRISPR 99.4 7.5E-12 1.6E-16 148.3 23.2 309 247-565 408-880 (1110)
160 PRK14873 primosome assembly pr 99.4 9.8E-12 2.1E-16 146.0 23.2 273 271-577 169-538 (665)
161 PRK12901 secA preprotein trans 99.4 6.3E-12 1.4E-16 148.2 18.6 126 452-580 609-743 (1112)
162 PF00176 SNF2_N: SNF2 family N 99.3 6.6E-12 1.4E-16 135.2 11.4 156 251-413 1-172 (299)
163 PF02399 Herpes_ori_bp: Origin 99.3 1.2E-10 2.6E-15 135.1 19.6 286 265-576 52-386 (824)
164 KOG1016 Predicted DNA helicase 99.2 2.1E-10 4.6E-15 128.8 14.2 107 471-577 720-848 (1387)
165 KOG1001 Helicase-like transcri 99.1 2.8E-10 6.1E-15 133.0 11.2 106 471-576 540-647 (674)
166 COG0610 Type I site-specific r 99.0 1.8E-08 3.8E-13 123.8 23.9 314 263-594 274-667 (962)
167 PF07652 Flavi_DEAD: Flaviviru 99.0 4.7E-10 1E-14 105.0 6.7 134 262-416 4-139 (148)
168 smart00489 DEXDc3 DEAD-like he 99.0 3.5E-09 7.5E-14 113.6 14.3 73 247-321 8-84 (289)
169 smart00488 DEXDc2 DEAD-like he 99.0 3.5E-09 7.5E-14 113.6 14.3 73 247-321 8-84 (289)
170 KOG0921 Dosage compensation co 99.0 1.5E-09 3.2E-14 124.3 11.4 310 255-577 386-773 (1282)
171 COG0653 SecA Preprotein transl 98.9 1.8E-08 3.8E-13 118.1 17.1 318 247-579 78-546 (822)
172 PF07517 SecA_DEAD: SecA DEAD- 98.7 5.3E-07 1.2E-11 94.6 16.7 129 245-385 75-210 (266)
173 TIGR00596 rad1 DNA repair prot 98.6 7.4E-07 1.6E-11 106.9 16.1 70 345-414 4-73 (814)
174 KOG0383 Predicted helicase [Ge 98.4 8.7E-09 1.9E-13 119.2 -6.8 78 455-533 615-696 (696)
175 PRK15483 type III restriction- 98.2 1.4E-05 3E-10 96.3 15.2 74 520-593 501-583 (986)
176 KOG1133 Helicase of the DEAD s 98.2 0.00091 2E-08 76.5 28.2 122 471-605 630-797 (821)
177 PF13086 AAA_11: AAA domain; P 98.2 1.5E-05 3.2E-10 82.2 13.5 73 247-320 1-75 (236)
178 KOG0952 DNA/RNA helicase MER3/ 98.2 5.5E-07 1.2E-11 105.8 2.9 258 249-522 929-1207(1230)
179 PF12340 DUF3638: Protein of u 98.1 5.4E-05 1.2E-09 77.2 14.8 153 225-387 3-187 (229)
180 PF13604 AAA_30: AAA domain; P 98.1 1.7E-05 3.7E-10 80.3 10.2 123 247-412 1-130 (196)
181 KOG1802 RNA helicase nonsense 98.1 4.3E-05 9.2E-10 86.3 13.6 86 238-334 401-486 (935)
182 COG3587 Restriction endonuclea 98.0 0.00048 1E-08 80.4 21.4 74 519-592 482-567 (985)
183 TIGR00376 DNA helicase, putati 98.0 0.00068 1.5E-08 80.6 22.9 68 246-321 156-224 (637)
184 PF13872 AAA_34: P-loop contai 98.0 5E-05 1.1E-09 80.2 11.8 168 230-416 26-223 (303)
185 PF13307 Helicase_C_2: Helicas 97.8 2.3E-05 4.9E-10 77.3 5.7 78 470-549 9-92 (167)
186 PF02562 PhoH: PhoH-like prote 97.7 9.3E-05 2E-09 74.8 8.1 146 246-412 3-155 (205)
187 TIGR01447 recD exodeoxyribonuc 97.7 0.00031 6.7E-09 82.4 13.6 142 250-412 148-295 (586)
188 PF09848 DUF2075: Uncharacteri 97.7 0.00015 3.3E-09 80.3 10.0 107 265-399 4-117 (352)
189 PRK10875 recD exonuclease V su 97.7 0.00034 7.4E-09 82.3 13.0 143 248-412 153-301 (615)
190 KOG1803 DNA helicase [Replicat 97.6 0.00012 2.7E-09 82.5 8.0 65 247-319 185-250 (649)
191 KOG1132 Helicase of the DEAD s 97.6 0.00028 6.2E-09 82.6 10.3 137 247-386 21-261 (945)
192 PRK10536 hypothetical protein; 97.5 0.0016 3.4E-08 67.9 13.8 146 244-410 56-210 (262)
193 TIGR01448 recD_rel helicase, p 97.5 0.00088 1.9E-08 80.9 13.7 126 246-412 322-452 (720)
194 PF13871 Helicase_C_4: Helicas 97.3 0.00086 1.9E-08 70.7 9.0 82 511-592 52-144 (278)
195 KOG1805 DNA replication helica 97.3 0.0013 2.9E-08 77.8 10.6 138 229-386 655-810 (1100)
196 COG3421 Uncharacterized protei 97.1 0.00094 2E-08 75.2 7.0 142 267-416 2-168 (812)
197 TIGR02768 TraA_Ti Ti-type conj 97.1 0.0073 1.6E-07 73.3 15.0 124 246-412 351-476 (744)
198 PF13245 AAA_19: Part of AAA d 97.0 0.0019 4.1E-08 54.7 6.8 53 262-318 10-62 (76)
199 KOG0298 DEAD box-containing he 97.0 0.0017 3.8E-08 78.8 8.1 154 261-420 373-557 (1394)
200 PRK13889 conjugal transfer rel 97.0 0.0063 1.4E-07 75.1 12.9 124 246-412 345-470 (988)
201 PF13401 AAA_22: AAA domain; P 96.9 0.0029 6.3E-08 59.0 7.8 17 262-278 4-20 (131)
202 TIGR02760 TraI_TIGR conjugativ 96.9 0.083 1.8E-06 70.5 22.8 236 247-519 429-685 (1960)
203 PRK04296 thymidine kinase; Pro 96.8 0.0024 5.3E-08 64.3 6.6 108 264-412 4-114 (190)
204 PRK14974 cell division protein 96.8 0.012 2.6E-07 64.4 12.4 132 263-425 141-276 (336)
205 PRK08181 transposase; Validate 96.8 0.014 3E-07 61.9 12.6 111 257-416 101-212 (269)
206 smart00492 HELICc3 helicase su 96.7 0.0098 2.1E-07 56.8 9.3 67 483-549 4-79 (141)
207 KOG1131 RNA polymerase II tran 96.6 0.018 3.8E-07 64.2 12.0 79 471-549 531-623 (755)
208 TIGR01073 pcrA ATP-dependent D 96.6 0.075 1.6E-06 64.8 18.9 72 246-323 3-74 (726)
209 PF00580 UvrD-helicase: UvrD/R 96.6 0.0053 1.2E-07 66.3 8.0 123 248-382 1-125 (315)
210 PRK13826 Dtr system oriT relax 96.6 0.03 6.6E-07 69.6 15.0 137 232-412 367-505 (1102)
211 COG1875 NYN ribonuclease and A 96.5 0.018 3.9E-07 62.0 11.0 143 244-411 225-386 (436)
212 PRK06526 transposase; Provisio 96.5 0.01 2.2E-07 62.5 9.1 25 255-279 91-115 (254)
213 PF05970 PIF1: PIF1-like helic 96.5 0.0051 1.1E-07 68.5 6.9 60 247-314 1-66 (364)
214 PRK14722 flhF flagellar biosyn 96.5 0.014 2.9E-07 64.7 10.0 133 261-425 136-270 (374)
215 PRK12723 flagellar biosynthesi 96.4 0.035 7.5E-07 62.0 13.1 132 262-424 174-309 (388)
216 smart00491 HELICc2 helicase su 96.4 0.012 2.7E-07 56.2 8.3 67 483-549 4-80 (142)
217 PF14617 CMS1: U3-containing 9 96.4 0.0074 1.6E-07 62.9 6.9 86 296-382 124-211 (252)
218 cd00009 AAA The AAA+ (ATPases 96.4 0.038 8.1E-07 51.6 11.3 17 262-278 19-35 (151)
219 KOG0339 ATP-dependent RNA heli 96.2 0.38 8.3E-06 53.9 18.9 71 470-544 295-376 (731)
220 PF00448 SRP54: SRP54-type pro 96.1 0.037 8.1E-07 55.9 10.2 131 265-424 4-136 (196)
221 PRK06921 hypothetical protein; 96.0 0.071 1.5E-06 56.6 12.3 46 261-314 116-161 (266)
222 smart00382 AAA ATPases associa 96.0 0.014 3E-07 54.0 6.1 17 262-278 2-18 (148)
223 PRK05703 flhF flagellar biosyn 95.8 0.17 3.7E-06 57.4 15.1 129 262-424 221-354 (424)
224 PRK07952 DNA replication prote 95.8 0.11 2.3E-06 54.4 12.4 108 263-417 100-209 (244)
225 PRK11889 flhF flagellar biosyn 95.8 0.12 2.6E-06 57.3 13.1 129 263-425 242-375 (436)
226 PF03354 Terminase_1: Phage Te 95.8 0.02 4.4E-07 66.1 7.5 150 250-411 1-161 (477)
227 COG1419 FlhF Flagellar GTP-bin 95.8 0.14 3E-06 56.7 13.3 135 260-426 201-337 (407)
228 PHA02533 17 large terminase pr 95.7 0.049 1.1E-06 63.4 10.4 148 247-413 59-210 (534)
229 TIGR01075 uvrD DNA helicase II 95.6 0.046 1E-06 66.5 10.2 109 246-383 3-114 (715)
230 cd01120 RecA-like_NTPases RecA 95.6 0.11 2.3E-06 49.9 10.7 44 370-413 83-136 (165)
231 PRK11773 uvrD DNA-dependent he 95.5 0.045 9.8E-07 66.6 9.6 71 246-322 8-78 (721)
232 PRK05642 DNA replication initi 95.5 0.05 1.1E-06 56.7 8.3 45 371-415 96-141 (234)
233 PRK08116 hypothetical protein; 95.4 0.23 5E-06 52.8 13.4 109 263-418 115-226 (268)
234 PRK06893 DNA replication initi 95.4 0.038 8.2E-07 57.4 7.0 46 371-416 90-137 (229)
235 PRK08727 hypothetical protein; 95.4 0.058 1.3E-06 56.1 8.4 47 371-417 92-140 (233)
236 PRK11054 helD DNA helicase IV; 95.3 0.056 1.2E-06 64.9 8.9 74 244-323 193-266 (684)
237 COG2805 PilT Tfp pilus assembl 95.2 0.028 6.1E-07 59.2 5.2 54 218-290 99-152 (353)
238 TIGR01547 phage_term_2 phage t 95.1 0.089 1.9E-06 59.3 9.4 145 264-425 3-152 (396)
239 PRK08084 DNA replication initi 95.0 0.074 1.6E-06 55.4 8.1 43 373-415 98-142 (235)
240 PRK12377 putative replication 95.0 0.081 1.8E-06 55.5 8.1 45 262-315 101-145 (248)
241 PRK00149 dnaA chromosomal repl 94.9 0.13 2.9E-06 58.9 10.5 109 263-418 149-259 (450)
242 PRK14723 flhF flagellar biosyn 94.9 0.52 1.1E-05 56.7 15.4 131 262-425 185-318 (767)
243 PRK06731 flhF flagellar biosyn 94.9 0.41 8.9E-06 50.8 13.2 131 261-425 74-209 (270)
244 PRK14712 conjugal transfer nic 94.8 0.16 3.5E-06 65.5 11.5 65 246-314 834-900 (1623)
245 PRK13709 conjugal transfer nic 94.8 0.24 5.3E-06 64.7 13.1 127 246-412 966-1099(1747)
246 PRK14087 dnaA chromosomal repl 94.7 0.11 2.4E-06 59.5 9.1 110 263-417 142-253 (450)
247 PRK06835 DNA replication prote 94.7 0.23 4.9E-06 54.4 10.9 45 261-314 182-226 (329)
248 KOG0989 Replication factor C, 94.6 0.16 3.4E-06 53.9 8.9 46 367-413 124-169 (346)
249 PRK10919 ATP-dependent DNA hel 94.6 0.06 1.3E-06 64.9 6.8 71 247-323 2-72 (672)
250 PRK07764 DNA polymerase III su 94.6 0.11 2.5E-06 63.4 9.2 43 370-414 118-160 (824)
251 PRK12727 flagellar biosynthesi 94.6 1.3 2.7E-05 51.3 16.8 130 261-425 349-482 (559)
252 KOG1513 Nuclear helicase MOP-3 94.6 0.055 1.2E-06 63.0 5.9 82 513-594 850-942 (1300)
253 TIGR03420 DnaA_homol_Hda DnaA 94.5 0.2 4.3E-06 51.5 9.7 42 373-414 91-133 (226)
254 PRK10917 ATP-dependent DNA hel 94.4 0.12 2.5E-06 62.5 8.8 99 446-544 285-389 (681)
255 TIGR00064 ftsY signal recognit 94.4 0.47 1E-05 50.6 12.4 132 263-425 73-214 (272)
256 COG1484 DnaC DNA replication p 94.4 0.2 4.4E-06 52.8 9.5 52 258-318 101-152 (254)
257 TIGR00362 DnaA chromosomal rep 94.3 0.21 4.6E-06 56.4 10.1 47 372-418 199-247 (405)
258 PRK14086 dnaA chromosomal repl 94.3 0.21 4.6E-06 58.5 10.1 49 370-418 375-425 (617)
259 cd01124 KaiC KaiC is a circadi 94.2 0.16 3.4E-06 50.4 8.0 48 265-321 2-49 (187)
260 TIGR02785 addA_Gpos recombinat 94.2 0.18 3.8E-06 65.0 10.1 124 247-383 1-126 (1232)
261 COG1444 Predicted P-loop ATPas 94.2 0.28 6E-06 58.5 10.9 148 240-414 207-357 (758)
262 PHA02544 44 clamp loader, smal 94.2 0.37 8E-06 52.4 11.3 39 372-410 100-138 (316)
263 PF05621 TniB: Bacterial TniB 94.1 0.33 7.1E-06 51.9 10.1 54 263-321 62-119 (302)
264 PF05127 Helicase_RecD: Helica 94.1 0.021 4.6E-07 56.4 1.2 124 266-414 1-124 (177)
265 KOG0298 DEAD box-containing he 94.1 0.048 1E-06 66.8 4.3 107 462-572 1213-1319(1394)
266 PRK05580 primosome assembly pr 94.0 0.19 4.2E-06 60.6 9.3 95 451-546 170-266 (679)
267 PRK00771 signal recognition pa 93.8 0.66 1.4E-05 52.7 12.6 53 373-425 176-229 (437)
268 TIGR01074 rep ATP-dependent DN 93.8 0.13 2.7E-06 62.3 7.3 70 248-323 2-71 (664)
269 PRK09183 transposase/IS protei 93.8 0.41 8.9E-06 50.7 10.3 23 257-279 97-119 (259)
270 PRK12422 chromosomal replicati 93.7 0.35 7.6E-06 55.3 10.3 50 371-420 201-252 (445)
271 PRK00411 cdc6 cell division co 93.6 0.47 1E-05 53.3 11.2 24 263-287 56-79 (394)
272 PTZ00112 origin recognition co 93.6 0.71 1.5E-05 55.8 12.7 23 264-287 782-805 (1164)
273 PRK05707 DNA polymerase III su 93.6 0.35 7.5E-06 53.0 9.7 41 248-289 4-48 (328)
274 PRK14721 flhF flagellar biosyn 93.6 0.59 1.3E-05 52.8 11.6 133 261-425 190-324 (420)
275 PRK06995 flhF flagellar biosyn 93.5 0.42 9.1E-06 54.8 10.5 62 262-330 256-317 (484)
276 PRK12323 DNA polymerase III su 93.5 0.46 1E-05 56.0 10.8 41 370-411 122-162 (700)
277 TIGR00643 recG ATP-dependent D 93.5 0.17 3.6E-06 60.7 7.6 97 448-544 261-363 (630)
278 PTZ00293 thymidine kinase; Pro 93.4 0.37 7.9E-06 49.1 8.8 39 262-308 4-42 (211)
279 PF00308 Bac_DnaA: Bacterial d 93.4 0.21 4.6E-06 51.4 7.3 48 370-417 95-144 (219)
280 PRK08903 DnaA regulatory inact 93.4 0.32 7E-06 50.2 8.7 43 372-415 90-133 (227)
281 PRK12402 replication factor C 93.4 0.36 7.9E-06 52.8 9.6 39 371-410 124-162 (337)
282 cd00561 CobA_CobO_BtuR ATP:cor 93.3 0.79 1.7E-05 44.6 10.6 53 370-422 93-147 (159)
283 TIGR00595 priA primosomal prot 93.3 0.24 5.1E-06 57.6 8.2 93 453-546 7-101 (505)
284 PF05876 Terminase_GpA: Phage 93.3 0.16 3.4E-06 59.8 6.8 127 246-385 15-147 (557)
285 PRK11331 5-methylcytosine-spec 93.2 0.23 5.1E-06 56.0 7.7 32 248-279 180-211 (459)
286 PRK08939 primosomal protein Dn 93.1 0.74 1.6E-05 50.0 11.1 25 262-287 156-180 (306)
287 PRK08769 DNA polymerase III su 93.1 0.58 1.3E-05 51.0 10.3 142 245-412 2-152 (319)
288 PRK14949 DNA polymerase III su 93.0 0.41 9E-06 58.2 9.8 44 371-416 118-161 (944)
289 PRK07003 DNA polymerase III su 93.0 0.58 1.3E-05 56.0 10.8 52 502-561 242-295 (830)
290 PF13173 AAA_14: AAA domain 93.0 0.73 1.6E-05 42.9 9.7 38 372-412 61-98 (128)
291 PHA03333 putative ATPase subun 93.0 1.7 3.6E-05 51.4 14.2 144 247-413 169-332 (752)
292 TIGR01425 SRP54_euk signal rec 93.0 1.1 2.5E-05 50.5 12.7 132 264-425 102-236 (429)
293 PRK14088 dnaA chromosomal repl 92.9 0.79 1.7E-05 52.4 11.7 50 372-421 194-245 (440)
294 PF00004 AAA: ATPase family as 92.9 0.21 4.5E-06 46.2 5.8 14 265-278 1-14 (132)
295 TIGR02881 spore_V_K stage V sp 92.9 0.79 1.7E-05 48.5 10.9 17 263-279 43-59 (261)
296 COG2256 MGS1 ATPase related to 92.9 0.39 8.4E-06 52.8 8.4 37 372-413 104-140 (436)
297 PRK14964 DNA polymerase III su 92.9 0.72 1.6E-05 53.1 11.1 43 370-414 114-156 (491)
298 PRK12726 flagellar biosynthesi 92.8 1.8 4E-05 48.0 13.5 131 261-424 205-339 (407)
299 TIGR00580 mfd transcription-re 92.7 0.24 5.2E-06 61.4 7.5 99 446-544 475-579 (926)
300 TIGR02760 TraI_TIGR conjugativ 92.7 0.6 1.3E-05 62.6 11.6 65 246-314 1018-1084(1960)
301 PLN03025 replication factor C 92.6 1 2.2E-05 49.3 11.5 40 371-412 98-137 (319)
302 PRK04195 replication factor C 92.5 0.86 1.9E-05 52.8 11.4 17 262-278 39-55 (482)
303 TIGR03499 FlhF flagellar biosy 92.4 0.49 1.1E-05 50.7 8.6 18 262-279 194-211 (282)
304 PRK05986 cob(I)alamin adenolsy 92.3 0.46 1E-05 47.5 7.6 146 260-423 20-168 (191)
305 PRK13833 conjugal transfer pro 92.3 0.36 7.9E-06 52.6 7.4 65 239-311 122-187 (323)
306 PRK06645 DNA polymerase III su 92.3 0.61 1.3E-05 54.0 9.6 18 263-280 44-61 (507)
307 COG0470 HolB ATPase involved i 92.2 1.2 2.5E-05 48.5 11.4 40 370-410 107-146 (325)
308 COG1435 Tdk Thymidine kinase [ 92.2 0.94 2E-05 45.2 9.4 88 264-383 6-93 (201)
309 PRK13342 recombination factor 92.2 0.88 1.9E-05 51.6 10.7 16 263-278 37-52 (413)
310 TIGR00708 cobA cob(I)alamin ad 92.1 1.3 2.9E-05 43.6 10.3 53 370-422 95-149 (173)
311 cd03115 SRP The signal recogni 92.1 2.3 4.9E-05 41.7 12.3 55 371-425 81-136 (173)
312 COG3973 Superfamily I DNA and 92.0 1.2 2.5E-05 51.4 11.0 88 231-321 188-283 (747)
313 KOG0739 AAA+-type ATPase [Post 92.0 2.1 4.5E-05 45.4 12.0 125 256-431 155-296 (439)
314 cd01122 GP4d_helicase GP4d_hel 92.0 0.45 9.7E-06 50.5 7.6 117 260-387 28-155 (271)
315 COG2109 BtuR ATP:corrinoid ade 91.9 1 2.2E-05 44.6 9.2 54 371-424 121-176 (198)
316 PHA03368 DNA packaging termina 91.9 0.72 1.6E-05 54.2 9.5 136 260-415 252-392 (738)
317 PRK14960 DNA polymerase III su 91.9 0.46 1E-05 56.1 8.1 42 371-414 117-158 (702)
318 PRK07994 DNA polymerase III su 91.8 1.8 3.9E-05 51.6 12.9 41 371-413 118-158 (647)
319 TIGR03015 pepcterm_ATPase puta 91.7 2.1 4.6E-05 45.1 12.5 32 247-278 23-59 (269)
320 PRK09111 DNA polymerase III su 91.7 0.42 9.1E-06 56.6 7.6 40 370-410 130-169 (598)
321 PF02572 CobA_CobO_BtuR: ATP:c 91.6 3.2 6.9E-05 41.0 12.4 140 265-421 6-147 (172)
322 TIGR03689 pup_AAA proteasome A 91.6 1 2.2E-05 52.1 10.4 17 262-278 216-232 (512)
323 TIGR02928 orc1/cdc6 family rep 91.6 1.1 2.3E-05 49.9 10.4 24 263-287 41-64 (365)
324 PRK14961 DNA polymerase III su 91.6 1.8 3.9E-05 48.2 12.1 40 370-410 117-156 (363)
325 PRK14956 DNA polymerase III su 91.5 0.65 1.4E-05 53.1 8.6 16 265-280 43-58 (484)
326 PRK08533 flagellar accessory p 91.4 1.9 4E-05 44.8 11.3 52 261-321 23-74 (230)
327 COG4962 CpaF Flp pilus assembl 91.4 0.3 6.6E-06 52.8 5.4 60 244-312 154-214 (355)
328 COG4626 Phage terminase-like p 91.3 1.3 2.8E-05 50.9 10.6 148 246-412 60-224 (546)
329 PRK09112 DNA polymerase III su 91.3 1 2.3E-05 49.7 9.8 40 370-410 139-178 (351)
330 COG0593 DnaA ATPase involved i 91.2 0.86 1.9E-05 51.0 9.0 48 372-419 175-224 (408)
331 TIGR03877 thermo_KaiC_1 KaiC d 91.2 0.6 1.3E-05 48.6 7.5 51 262-321 21-71 (237)
332 PF13177 DNA_pol3_delta2: DNA 91.2 1.4 3E-05 43.1 9.5 42 371-413 101-142 (162)
333 PRK13894 conjugal transfer ATP 91.2 0.54 1.2E-05 51.3 7.3 67 237-311 124-191 (319)
334 PRK13341 recombination factor 91.1 1.3 2.8E-05 53.7 11.0 47 372-423 109-155 (725)
335 COG1474 CDC6 Cdc6-related prot 91.1 2.2 4.7E-05 47.5 12.0 24 263-287 43-66 (366)
336 PRK14873 primosome assembly pr 91.1 0.65 1.4E-05 55.7 8.3 92 454-546 171-265 (665)
337 KOG0741 AAA+-type ATPase [Post 90.9 2.1 4.5E-05 48.7 11.4 57 219-278 210-272 (744)
338 KOG2028 ATPase related to the 90.9 0.88 1.9E-05 49.3 8.2 52 370-426 220-271 (554)
339 cd00984 DnaB_C DnaB helicase C 90.9 0.74 1.6E-05 47.8 7.8 38 261-305 12-49 (242)
340 PRK10867 signal recognition pa 90.8 2.8 6E-05 47.7 12.7 17 264-280 102-118 (433)
341 PF06733 DEAD_2: DEAD_2; Inte 90.8 0.17 3.7E-06 50.0 2.8 45 342-386 113-159 (174)
342 PRK14965 DNA polymerase III su 90.8 1.6 3.4E-05 51.7 11.2 44 370-415 117-160 (576)
343 TIGR03881 KaiC_arch_4 KaiC dom 90.7 2.8 6E-05 43.2 11.8 52 261-321 19-70 (229)
344 PRK10689 transcription-repair 90.7 0.73 1.6E-05 58.6 8.8 99 446-544 624-728 (1147)
345 PRK12724 flagellar biosynthesi 90.7 3 6.5E-05 47.0 12.5 126 263-424 224-356 (432)
346 TIGR00959 ffh signal recogniti 90.7 2.5 5.4E-05 48.0 12.2 17 264-280 101-117 (428)
347 PRK08691 DNA polymerase III su 90.4 1.7 3.8E-05 51.7 10.9 40 370-410 117-156 (709)
348 PRK14958 DNA polymerase III su 90.4 0.59 1.3E-05 54.4 7.0 39 371-410 118-156 (509)
349 PRK14955 DNA polymerase III su 90.3 2.5 5.3E-05 47.8 11.9 18 264-281 40-57 (397)
350 PF06745 KaiC: KaiC; InterPro 90.3 0.64 1.4E-05 47.9 6.7 133 262-413 19-160 (226)
351 TIGR02525 plasmid_TraJ plasmid 90.2 0.74 1.6E-05 51.2 7.3 50 221-289 126-175 (372)
352 PHA00729 NTP-binding motif con 90.2 2.2 4.8E-05 43.9 10.2 74 350-423 60-138 (226)
353 COG3972 Superfamily I DNA and 90.2 1.2 2.6E-05 50.1 8.7 132 246-384 161-307 (660)
354 PRK14952 DNA polymerase III su 90.1 1.2 2.6E-05 52.5 9.4 44 370-415 116-159 (584)
355 TIGR02782 TrbB_P P-type conjug 90.1 1.1 2.5E-05 48.3 8.5 66 238-311 109-175 (299)
356 KOG0738 AAA+-type ATPase [Post 90.1 1.9 4E-05 47.4 9.8 16 263-278 246-261 (491)
357 PRK14959 DNA polymerase III su 89.9 1 2.2E-05 53.2 8.4 19 263-281 39-57 (624)
358 TIGR02524 dot_icm_DotB Dot/Icm 89.9 0.74 1.6E-05 51.0 7.0 49 221-288 111-159 (358)
359 PHA03372 DNA packaging termina 89.8 6.7 0.00014 45.8 14.5 128 262-413 202-337 (668)
360 PRK07471 DNA polymerase III su 89.7 1.6 3.4E-05 48.7 9.4 135 264-413 43-181 (365)
361 PRK14951 DNA polymerase III su 89.6 0.86 1.9E-05 54.0 7.6 45 370-416 122-166 (618)
362 PF03796 DnaB_C: DnaB-like hel 89.4 3.3 7.1E-05 43.7 11.3 115 263-387 20-145 (259)
363 PRK05563 DNA polymerase III su 89.4 1.9 4E-05 50.9 10.3 44 370-415 117-160 (559)
364 PF03969 AFG1_ATPase: AFG1-lik 89.2 7.1 0.00015 43.4 14.1 109 262-416 62-171 (362)
365 CHL00181 cbbX CbbX; Provisiona 89.1 2.6 5.6E-05 45.3 10.3 18 262-279 59-76 (287)
366 PRK11034 clpA ATP-dependent Cl 89.1 2.7 5.8E-05 51.3 11.5 44 374-417 280-327 (758)
367 PRK10416 signal recognition pa 89.1 6.2 0.00013 43.1 13.3 134 262-425 114-256 (318)
368 PRK13900 type IV secretion sys 89.1 1.1 2.3E-05 49.3 7.5 44 259-311 157-200 (332)
369 COG1200 RecG RecG-like helicas 89.0 0.88 1.9E-05 53.3 6.9 88 457-544 298-390 (677)
370 PRK07940 DNA polymerase III su 88.9 1.8 4E-05 48.6 9.3 45 370-416 115-159 (394)
371 PF05729 NACHT: NACHT domain 88.8 2.3 5E-05 40.7 9.0 38 375-412 84-129 (166)
372 PRK13851 type IV secretion sys 88.8 0.61 1.3E-05 51.4 5.3 45 258-311 158-202 (344)
373 PF05496 RuvB_N: Holliday junc 88.7 1.3 2.9E-05 45.4 7.3 15 264-278 52-66 (233)
374 PRK14957 DNA polymerase III su 88.7 5.5 0.00012 46.7 13.3 40 370-410 117-156 (546)
375 PRK14954 DNA polymerase III su 88.7 2.8 6.1E-05 49.9 11.0 40 370-410 125-164 (620)
376 KOG2543 Origin recognition com 88.6 6.3 0.00014 43.4 12.5 142 248-416 10-161 (438)
377 COG1198 PriA Primosomal protei 88.5 0.75 1.6E-05 55.2 6.2 92 452-544 226-319 (730)
378 PRK14950 DNA polymerase III su 88.5 3.8 8.3E-05 48.7 12.2 41 370-412 118-158 (585)
379 KOG0701 dsRNA-specific nucleas 88.4 0.36 7.8E-06 61.9 3.6 93 473-565 295-399 (1606)
380 PRK11823 DNA repair protein Ra 88.4 2.5 5.4E-05 48.4 10.1 57 256-321 69-130 (446)
381 PRK14962 DNA polymerase III su 88.3 3.7 8.1E-05 47.3 11.4 16 265-280 39-54 (472)
382 PRK00440 rfc replication facto 88.2 5.5 0.00012 43.1 12.4 38 372-410 102-139 (319)
383 PF03237 Terminase_6: Terminas 88.1 5.4 0.00012 43.7 12.5 144 266-428 1-154 (384)
384 COG0513 SrmB Superfamily II DN 88.1 1.5 3.2E-05 51.3 8.2 68 473-544 102-180 (513)
385 PHA00012 I assembly protein 88.0 6.8 0.00015 42.5 12.2 58 370-427 79-141 (361)
386 TIGR02639 ClpA ATP-dependent C 88.0 6.4 0.00014 48.2 13.9 16 263-278 204-219 (731)
387 COG2909 MalT ATP-dependent tra 88.0 1.7 3.6E-05 52.3 8.4 44 372-415 129-172 (894)
388 PRK14963 DNA polymerase III su 87.9 1.6 3.5E-05 50.7 8.3 22 265-287 39-60 (504)
389 TIGR02880 cbbX_cfxQ probable R 87.8 3 6.6E-05 44.7 9.8 18 262-279 58-75 (284)
390 COG1110 Reverse gyrase [DNA re 87.8 1 2.2E-05 54.9 6.5 62 469-530 124-191 (1187)
391 PRK06871 DNA polymerase III su 87.7 2.2 4.8E-05 46.6 8.7 41 370-411 105-145 (325)
392 PRK14969 DNA polymerase III su 87.7 4 8.7E-05 47.8 11.5 40 370-410 117-156 (527)
393 TIGR03600 phage_DnaB phage rep 87.6 4.2 9.2E-05 46.2 11.4 116 261-386 193-319 (421)
394 PRK04841 transcriptional regul 87.6 4.1 8.9E-05 51.0 12.4 44 371-414 120-163 (903)
395 KOG0991 Replication factor C, 87.5 2 4.4E-05 43.9 7.5 41 371-412 112-152 (333)
396 KOG0058 Peptide exporter, ABC 87.5 1.3 2.9E-05 52.2 7.1 143 260-411 492-660 (716)
397 TIGR03346 chaperone_ClpB ATP-d 87.3 6.2 0.00013 49.2 13.4 17 263-279 195-211 (852)
398 PRK06067 flagellar accessory p 87.3 11 0.00025 38.8 13.6 51 262-321 25-75 (234)
399 PRK07414 cob(I)yrinic acid a,c 87.3 9 0.0002 38.0 11.8 53 370-422 113-167 (178)
400 cd01121 Sms Sms (bacterial rad 87.2 2.2 4.9E-05 47.5 8.6 51 262-321 82-132 (372)
401 TIGR00614 recQ_fam ATP-depende 87.2 2.4 5.2E-05 49.0 9.2 95 447-544 30-133 (470)
402 KOG0742 AAA+-type ATPase [Post 87.1 1.2 2.7E-05 48.8 6.2 16 263-278 385-400 (630)
403 PRK05973 replicative DNA helic 87.1 2.1 4.5E-05 44.6 7.7 65 247-321 50-114 (237)
404 PRK08699 DNA polymerase III su 87.0 5.1 0.00011 43.9 11.1 39 249-288 3-46 (325)
405 COG0552 FtsY Signal recognitio 86.9 8.2 0.00018 41.9 12.1 129 265-424 142-280 (340)
406 KOG0733 Nuclear AAA ATPase (VC 86.8 1.9 4.1E-05 49.9 7.6 53 223-278 506-561 (802)
407 PF01443 Viral_helicase1: Vira 86.8 0.5 1.1E-05 48.7 3.1 14 265-278 1-14 (234)
408 cd01128 rho_factor Transcripti 86.8 1.5 3.2E-05 46.2 6.5 20 259-278 13-32 (249)
409 PRK06964 DNA polymerase III su 86.3 4.1 8.8E-05 44.9 9.9 40 249-289 3-47 (342)
410 KOG0745 Putative ATP-dependent 86.3 0.97 2.1E-05 50.1 4.9 27 261-289 225-251 (564)
411 PRK13764 ATPase; Provisional 86.3 1.5 3.2E-05 51.7 6.8 27 261-288 256-282 (602)
412 PRK14948 DNA polymerase III su 86.3 4.4 9.4E-05 48.4 10.8 24 263-287 39-62 (620)
413 cd03239 ABC_SMC_head The struc 86.3 0.8 1.7E-05 45.5 4.1 43 370-412 114-157 (178)
414 PRK05896 DNA polymerase III su 86.2 1.8 3.8E-05 51.0 7.3 18 263-280 39-56 (605)
415 PF01695 IstB_IS21: IstB-like 86.0 1.2 2.6E-05 44.3 5.1 50 256-314 41-90 (178)
416 PRK06904 replicative DNA helic 86.0 9.2 0.0002 44.2 13.0 115 262-386 221-348 (472)
417 PF02534 T4SS-DNA_transf: Type 85.6 0.85 1.8E-05 52.6 4.4 57 263-333 45-101 (469)
418 KOG0741 AAA+-type ATPase [Post 85.6 8.6 0.00019 44.0 11.8 137 230-416 494-652 (744)
419 cd01126 TraG_VirD4 The TraG/Tr 85.4 0.61 1.3E-05 52.3 3.0 55 264-332 1-55 (384)
420 KOG1832 HIV-1 Vpr-binding prot 85.2 0.53 1.2E-05 55.7 2.4 11 29-39 1393-1403(1516)
421 KOG3973 Uncharacterized conser 85.1 0.81 1.8E-05 48.6 3.4 26 618-643 429-454 (465)
422 PRK10865 protein disaggregatio 85.0 8.9 0.00019 47.7 13.1 16 263-278 200-215 (857)
423 PRK07993 DNA polymerase III su 85.0 3.6 7.9E-05 45.2 8.7 41 370-411 106-146 (334)
424 COG3267 ExeA Type II secretory 84.8 4.6 9.9E-05 42.1 8.7 22 259-280 47-69 (269)
425 COG5008 PilU Tfp pilus assembl 84.8 0.76 1.7E-05 47.8 3.1 44 223-286 106-150 (375)
426 PRK04328 hypothetical protein; 84.8 4.5 9.8E-05 42.5 9.1 51 262-321 23-73 (249)
427 PRK04537 ATP-dependent RNA hel 84.7 4.4 9.6E-05 48.0 9.9 72 297-378 256-331 (572)
428 TIGR00635 ruvB Holliday juncti 84.7 1.6 3.4E-05 47.2 5.7 16 263-278 31-46 (305)
429 KOG0740 AAA+-type ATPase [Post 84.7 3.5 7.7E-05 46.3 8.5 79 372-467 245-336 (428)
430 PTZ00454 26S protease regulato 84.5 3.3 7.1E-05 46.7 8.3 54 222-278 139-195 (398)
431 PRK06090 DNA polymerase III su 84.5 2.8 6E-05 45.7 7.5 42 370-412 106-147 (319)
432 cd00268 DEADc DEAD-box helicas 84.5 5.2 0.00011 40.1 9.1 71 470-544 69-149 (203)
433 TIGR03878 thermo_KaiC_2 KaiC d 84.3 5 0.00011 42.4 9.2 37 261-305 35-71 (259)
434 PRK11634 ATP-dependent RNA hel 84.2 2.7 5.8E-05 50.4 7.8 71 470-544 74-155 (629)
435 TIGR01243 CDC48 AAA family ATP 84.2 2.8 6.1E-05 51.3 8.2 22 263-286 488-509 (733)
436 CHL00095 clpC Clp protease ATP 84.1 5.8 0.00013 49.2 11.0 17 263-279 201-217 (821)
437 TIGR01420 pilT_fam pilus retra 84.1 2.8 6E-05 46.3 7.4 42 262-310 122-163 (343)
438 COG1485 Predicted ATPase [Gene 84.0 17 0.00038 39.7 13.0 116 255-417 53-175 (367)
439 PRK06620 hypothetical protein; 84.0 4.9 0.00011 41.2 8.7 105 301-416 17-126 (214)
440 PRK07133 DNA polymerase III su 83.8 1.9 4.1E-05 51.9 6.2 43 370-414 116-158 (725)
441 PRK07399 DNA polymerase III su 83.7 5.6 0.00012 43.4 9.4 56 353-411 106-161 (314)
442 COG2804 PulE Type II secretory 83.6 1.8 3.8E-05 49.3 5.6 40 249-289 243-284 (500)
443 cd01130 VirB11-like_ATPase Typ 83.5 2.8 6E-05 41.9 6.5 32 247-278 9-41 (186)
444 TIGR00678 holB DNA polymerase 83.4 6.3 0.00014 39.2 9.1 25 264-289 16-40 (188)
445 TIGR03345 VI_ClpV1 type VI sec 82.9 12 0.00026 46.5 13.0 16 263-278 209-224 (852)
446 TIGR00665 DnaB replicative DNA 82.8 9.6 0.00021 43.5 11.4 112 262-385 195-318 (434)
447 PRK08451 DNA polymerase III su 82.8 3.6 7.9E-05 48.0 7.9 40 370-410 115-154 (535)
448 TIGR00767 rho transcription te 82.8 2.1 4.5E-05 47.8 5.6 18 261-278 167-184 (415)
449 PRK08506 replicative DNA helic 82.7 8 0.00017 44.7 10.7 112 262-385 192-315 (472)
450 TIGR02858 spore_III_AA stage I 82.7 6.8 0.00015 41.7 9.4 16 263-278 112-127 (270)
451 PF01637 Arch_ATPase: Archaeal 82.7 1.4 2.9E-05 45.0 4.0 55 355-413 105-165 (234)
452 PRK13897 type IV secretion sys 82.6 1.3 2.8E-05 52.4 4.3 57 263-333 159-215 (606)
453 PRK05748 replicative DNA helic 82.6 6.6 0.00014 45.1 9.9 114 262-385 203-327 (448)
454 TIGR01243 CDC48 AAA family ATP 82.5 5.5 0.00012 48.8 9.8 18 261-278 211-228 (733)
455 TIGR01389 recQ ATP-dependent D 82.4 4.6 0.0001 48.1 8.9 79 447-528 32-111 (591)
456 COG1197 Mfd Transcription-repa 82.3 3.4 7.4E-05 51.5 7.7 92 453-544 625-722 (1139)
457 TIGR01241 FtsH_fam ATP-depende 82.1 7.6 0.00016 45.2 10.3 16 263-278 89-104 (495)
458 PRK10436 hypothetical protein; 81.9 2.1 4.6E-05 49.1 5.5 36 251-287 205-242 (462)
459 cd01129 PulE-GspE PulE/GspE Th 81.7 3.6 7.7E-05 43.7 6.8 37 250-287 66-104 (264)
460 PRK08006 replicative DNA helic 81.7 14 0.00031 42.6 12.2 114 262-385 224-349 (471)
461 PRK05636 replicative DNA helic 81.7 11 0.00024 43.9 11.3 109 263-385 266-388 (505)
462 TIGR03880 KaiC_arch_3 KaiC dom 81.7 8.7 0.00019 39.4 9.6 51 262-321 16-66 (224)
463 PRK06647 DNA polymerase III su 81.6 5.8 0.00013 46.8 9.1 42 370-413 117-158 (563)
464 COG0210 UvrD Superfamily I DNA 81.6 3 6.6E-05 50.3 7.0 71 247-323 2-72 (655)
465 PRK07413 hypothetical protein; 81.5 14 0.00031 41.1 11.5 54 370-423 123-178 (382)
466 PRK14701 reverse gyrase; Provi 81.5 3.6 7.8E-05 54.3 8.0 60 470-529 122-187 (1638)
467 TIGR03819 heli_sec_ATPase heli 81.4 3.2 7E-05 45.7 6.5 64 237-311 154-218 (340)
468 PRK08840 replicative DNA helic 81.4 15 0.00033 42.2 12.3 115 261-385 216-342 (464)
469 KOG0060 Long-chain acyl-CoA tr 81.0 1.5 3.2E-05 50.5 3.7 48 353-401 570-617 (659)
470 PRK11776 ATP-dependent RNA hel 80.9 4.4 9.5E-05 46.6 7.8 70 471-544 73-153 (460)
471 PRK08760 replicative DNA helic 80.9 10 0.00022 43.8 10.7 112 262-385 229-352 (476)
472 PF12846 AAA_10: AAA-like doma 80.9 4.4 9.5E-05 43.1 7.4 42 263-312 2-43 (304)
473 TIGR02237 recomb_radB DNA repa 80.8 8.4 0.00018 38.9 9.0 37 262-306 12-48 (209)
474 KOG0331 ATP-dependent RNA heli 80.7 6.2 0.00013 45.5 8.6 89 272-377 322-414 (519)
475 PRK09376 rho transcription ter 80.7 5.8 0.00012 44.3 8.1 26 261-287 168-193 (416)
476 COG1132 MdlB ABC-type multidru 80.5 2.9 6.2E-05 49.6 6.2 44 370-413 481-524 (567)
477 PRK06305 DNA polymerase III su 80.4 11 0.00024 43.3 10.6 37 371-408 120-156 (451)
478 TIGR00763 lon ATP-dependent pr 80.4 19 0.0004 44.5 13.3 17 262-278 347-363 (775)
479 PHA00350 putative assembly pro 80.3 12 0.00026 42.0 10.5 23 265-287 4-27 (399)
480 cd03221 ABCF_EF-3 ABCF_EF-3 E 80.3 9.2 0.0002 36.4 8.5 40 370-412 86-125 (144)
481 PRK07004 replicative DNA helic 80.2 10 0.00022 43.6 10.4 115 262-386 213-338 (460)
482 TIGR02012 tigrfam_recA protein 80.2 3.2 7E-05 45.2 5.9 42 262-311 55-96 (321)
483 PRK11192 ATP-dependent RNA hel 79.9 7.6 0.00016 44.3 9.2 70 298-377 245-318 (434)
484 PRK03992 proteasome-activating 79.5 6.8 0.00015 44.1 8.5 16 263-278 166-181 (389)
485 KOG0333 U5 snRNP-like RNA heli 79.5 7.4 0.00016 44.3 8.4 71 297-377 516-590 (673)
486 PRK10590 ATP-dependent RNA hel 79.4 8.7 0.00019 44.2 9.6 70 298-377 245-318 (456)
487 CHL00176 ftsH cell division pr 79.3 9.6 0.00021 45.7 10.0 16 263-278 217-232 (638)
488 COG0630 VirB11 Type IV secreto 79.2 4.3 9.3E-05 44.2 6.6 57 246-311 126-183 (312)
489 PF10593 Z1: Z1 domain; Inter 79.1 6.7 0.00014 41.0 7.6 102 494-605 110-216 (239)
490 KOG2004 Mitochondrial ATP-depe 78.9 14 0.0003 43.9 10.7 63 333-400 471-533 (906)
491 PTZ00110 helicase; Provisional 78.8 11 0.00024 44.5 10.2 72 297-378 376-451 (545)
492 TIGR00631 uvrb excinuclease AB 78.7 25 0.00053 42.4 13.3 116 296-421 440-561 (655)
493 PRK06321 replicative DNA helic 78.7 14 0.0003 42.7 10.8 112 263-386 227-350 (472)
494 cd01125 repA Hexameric Replica 78.5 18 0.00039 37.6 10.8 57 265-323 4-65 (239)
495 PRK07413 hypothetical protein; 78.5 8.1 0.00018 42.9 8.4 53 371-423 304-359 (382)
496 TIGR02538 type_IV_pilB type IV 78.3 3.1 6.7E-05 49.2 5.5 38 249-287 301-340 (564)
497 PRK09354 recA recombinase A; P 78.2 5.7 0.00012 43.7 7.1 43 262-312 60-102 (349)
498 PRK14971 DNA polymerase III su 78.2 18 0.00039 43.2 11.8 42 370-413 119-160 (614)
499 KOG1513 Nuclear helicase MOP-3 78.2 2 4.3E-05 50.8 3.7 154 246-413 263-454 (1300)
500 PF00437 T2SE: Type II/IV secr 78.0 1.7 3.7E-05 46.1 2.9 43 259-310 124-167 (270)
No 1
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-125 Score=998.81 Aligned_cols=698 Identities=60% Similarity=0.925 Sum_probs=628.5
Q ss_pred CCCccccccccccccccccchhcccCCcccccCCCCCCCCCCCCCCcccCcccc----cchhhhhcCCCCCCCCCccCCc
Q 003887 1 MTKRKFGFEGFNINRQTSYSFEQSQAPQRLYVPPSSRYSHDNYEDTDLDNIDYE----DNDAAKAANDTGNGAEKEEIDP 76 (789)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----ed~e~~~~~~~~~~~eede~d~ 76 (789)
|+.|+|||+||+.+|+.+|+|+++++|+++|+|++++.+ ++.++.+-..++++ |||.++..+......+.||+|+
T Consensus 1 l~~r~~g~~g~~rn~~ts~~~e~s~~~~~~y~~~s~yg~-~~~~~~~rk~i~ddey~eddd~p~~~s~~~a~~~~de~d~ 79 (731)
T KOG0339|consen 1 LSNRKFGMEGFGRNRQTSYSFERSQAPQRLYVPPSSYGG-DNSEDADRKNIDDDEYEEDDDIPEGGSAAAAGGEVDEIDP 79 (731)
T ss_pred CCccCCCCCCCCcCcccccchhhhcCccceecChhhcCC-CchhhhhhhcccccccccccccccccchhhccCCCCCCCC
Confidence 789999999999999999999999999999999988776 33333233333322 2333333334455677889999
Q ss_pred hhHHhhhhHHHhhcCCCCCCcccccccC------------CCCCCchhHHHHHhhhhcCchhhhhhhhcCCCChHHHHHH
Q 003887 77 LDAFMEGIHEEMRAAPPPKPKEKLERYK------------DDDEEDPMESFLMAKKDVGLTLAADALRAGYDSDEEVYAA 144 (789)
Q Consensus 77 ~d~~~~~l~~~~~~~~~~~~~~~~~~~~------------d~deed~~e~~~~~~~~~~~~~~~~~~~~g~~~~ee~~~~ 144 (789)
+|+||+.+++++.+.+++..+++.+..+ |.++++..|.+++++.+. ..+| .
T Consensus 80 ldafMA~~~d~~~sd~~~~e~kk~eRkn~dd~~p~~~vr~dI~~e~aae~~~kym~e~--------k~~~---------~ 142 (731)
T KOG0339|consen 80 LDAFMAKIEDQAQSDKKPLEQKKKERKNDDDDDPTATVRADIDEEDAAEALFKYMSEN--------KRAG---------A 142 (731)
T ss_pred cchhhhhhhhhhhccCCccchHHHhhhccCCCccchhhhcchhhHHhHHHHHHHhhhc--------ccch---------h
Confidence 9999999999998877655544433333 223344555555555331 1222 2
Q ss_pred HhhhccCCCCCCCCCChhhhhhhccCCCCCCCCCccccCccccccccCChhccCCCHHHHHHHHHHcCcccccCCCCCCC
Q 003887 145 AKAVDAGMLDYDSDDNPVVVEKKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPV 224 (789)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~f~k~fy~~~~~i~~~s~~~~~~~r~~~~i~v~~~~~P~pi 224 (789)
+++++....+||++++++...|+.++|+++++|+.|+|.||+++||.+|..|..|+..+...++..+++++.+..+|+|+
T Consensus 143 ~~e~~~~~leydsd~nPi~~~kr~idpl~~idhs~i~y~p~~kdfy~e~esI~gl~~~d~~~~r~~Lnlrv~g~s~~rpv 222 (731)
T KOG0339|consen 143 AKECDDMCLEYDSDGNPIAPDKRQIDPLPPIDHSEIDYEPFNKDFYEEHESIEGLTKMDVIDLRLTLNLRVSGSSPPRPV 222 (731)
T ss_pred hhhcccceeecCCCCCccCcccccCCCCCCcchhhccccccccccccChhhhhccccccchhhHhhhcceeccCCCCCCc
Confidence 34455677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEE
Q 003887 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (789)
Q Consensus 225 ~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl 304 (789)
++|++++|+..|+.++.+..|++|||+|++++|..++|+|+|.+|.||||||.+|++|++.|+++++.+...++|+.|||
T Consensus 223 tsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vil 302 (731)
T KOG0339|consen 223 TSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVIL 302 (731)
T ss_pred chhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchh
Q 003887 305 APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM 384 (789)
Q Consensus 305 ~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m 384 (789)
||||+||.||+.++++|++.++++++++|||.+.++|+..|+.++.||||||+||+++++.+.+++.+++|||||||++|
T Consensus 303 vPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrm 382 (731)
T KOG0339|consen 303 VPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRM 382 (731)
T ss_pred eccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHHHHhc
Q 003887 385 FDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKL 464 (789)
Q Consensus 385 ~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L 464 (789)
+++||+++++.|..++++++|+|+||||++..++.+++.+|.+|+.+..+.++..+.+|+|.+.++++...|+.||+..|
T Consensus 383 fdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L 462 (731)
T KOG0339|consen 383 FDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHL 462 (731)
T ss_pred hccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEE
Q 003887 465 PGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN 544 (789)
Q Consensus 465 ~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~ 544 (789)
.+....|++|||+..+..++.|+..|+..++.|..+||+|.|.+|.++|..|+.+...|||+||+++|||||+.+++|||
T Consensus 463 ~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvn 542 (731)
T KOG0339|consen 463 VEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVN 542 (731)
T ss_pred hhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHHHHHHcCCCccHHHHHHHHhcCcccccccccCCCCCC
Q 003887 545 FDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGRFRSKRDARKGGGKK 624 (789)
Q Consensus 545 ~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~L~~~~~~vp~~l~~~a~~~~~~~~~~~~r~~g~~~ 624 (789)
||+..+++.|+|||||+||+|. .|++|+|+++.|..++..|++.|+.++|.||.+|++||++..||+.+|.++++|+++
T Consensus 543 yD~ardIdththrigrtgRag~-kGvayTlvTeKDa~fAG~LVnnLe~agQnVP~~l~dlamk~s~fr~~r~~~g~gk~~ 621 (731)
T KOG0339|consen 543 YDFARDIDTHTHRIGRTGRAGE-KGVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDELMDLAMKSSWFRSSRFGRGGGKKG 621 (731)
T ss_pred ccccchhHHHHHHhhhcccccc-cceeeEEechhhHHHhhHHHHHHhhccccCChHHHHHHhhhhhhhhhhccCCCCCCC
Confidence 9999999999999999999995 599999999999999999999999999999999999999999999999887777654
Q ss_pred CCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCC-CCCchhhhhhhHHHHHHhhhcccccccCCCCCCCCCCCCCCcCCCC
Q 003887 625 GKGRGGAGRGVRGVDFGLGIGYTPESNNTSSQS-VPSRSAAVNSLKTGMMTQFRSNFVAASSNTPSEGFNNSASAYANKR 703 (789)
Q Consensus 625 g~g~gggg~g~rg~~~g~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (789)
. +||||.|+|+.+ |+|+|+.++++..++++ .|++|-..++|++||++||+++|||++.++++.. +++++|
T Consensus 622 ~--~~~gglgyr~~~-g~g~~~~g~~~~t~~~a~~ps~~gr~~~~r~af~~q~~~~f~a~t~sn~~~q------~~~~~~ 692 (731)
T KOG0339|consen 622 T--GGGGGLGYREKD-GLGIGFRGGSNRTPSSAASPSTSGRITAMRTAFQSQFKNSFVAATPSNPPNQ------AAPKKR 692 (731)
T ss_pred C--CCCCCcccccCC-CCCccccCCCCcCcccccCCCcchhHHHHHHHHHHHhhhheeccCCCCCccc------cccCCC
Confidence 4 334477888876 88888999888888764 5666667899999999999999999999876654 489999
Q ss_pred ccccccccCCccccCCCCccccccc
Q 003887 704 PALRGFVSGGSIGGDVNGTQTTGLT 728 (789)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (789)
|.+. +||+.|||++.++|..+..
T Consensus 693 p~~~--v~~~~~~~~~~~~q~~s~~ 715 (731)
T KOG0339|consen 693 PELG--VSGAPIGGPSARTQGQSAS 715 (731)
T ss_pred Cccc--eecCccCCcchhccccCCC
Confidence 9998 9999999999999877655
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.4e-80 Score=679.96 Aligned_cols=427 Identities=50% Similarity=0.816 Sum_probs=397.0
Q ss_pred cccCccccccccCChhccCCCHHHHHHHHHHcCcccccCC-CCCCCCCccc-----------------------------
Q 003887 180 IDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFD-VPRPVKTFED----------------------------- 229 (789)
Q Consensus 180 ~~~~~f~k~fy~~~~~i~~~s~~~~~~~r~~~~i~v~~~~-~P~pi~sf~~----------------------------- 229 (789)
..+.+|.+.||.+++....+...+....+.+..+.+++.. +|.|+.+|+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 95 (519)
T KOG0331|consen 16 LDLSPFDKNFYKEHPSVKKRGSAEVERKRKKNEITVKGGDSVPKPVKSFEESGFPAKVLEEIPKLSRSSGESDSSAAFQE 95 (519)
T ss_pred cccCcccccccccccccccccccccccccCcceeeccCCCCCCCCccchhcccCCccccccccccccccccCCcchhhhc
Confidence 4568899999999988888888888888888888888766 8887666554
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhc-CcccccCCCCEEEEEcCcH
Q 003887 230 CGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMD-QPELQKEEGPIGVICAPTR 308 (789)
Q Consensus 230 ~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~-~~~~~~~~gp~vLIl~PTr 308 (789)
++|++.+...++..||..|||||+++||.++.|+|++.+|.||||||++|++|++.|+.. ++...+.++|++|||+|||
T Consensus 96 ~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTR 175 (519)
T KOG0331|consen 96 LGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTR 175 (519)
T ss_pred ccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcH
Confidence 455666677788999999999999999999999999999999999999999999999998 6777888899999999999
Q ss_pred HHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCC
Q 003887 309 ELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG 388 (789)
Q Consensus 309 eLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~ 388 (789)
|||.|+..++.++.....++++|+|||.+...|...+.++++|+|+||++|+++++...++|+++.|+||||||+|++++
T Consensus 176 ELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmG 255 (519)
T KOG0331|consen 176 ELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMG 255 (519)
T ss_pred HHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhhc-CCCceEEEEeccCcHHHHHHHHHHhCCCeEEeecccc--CccccceEEEEecCCCcchHHHHHHhcC
Q 003887 389 FEPQIRSIVGQI-RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVG--MANEDITQVVHVIPSDAEKLPWLLEKLP 465 (789)
Q Consensus 389 f~~~i~~il~~~-~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~--~~~~~i~q~~~~~~~~~~k~~~L~~~L~ 465 (789)
|+++|+.|+..+ ++.+|+||+|||||..++.++..|+.+|+.+.++... .++.+|.|++..++ ...|...|..+|.
T Consensus 256 Fe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~-~~~K~~~l~~lL~ 334 (519)
T KOG0331|consen 256 FEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCD-ETAKLRKLGKLLE 334 (519)
T ss_pred cHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcC-HHHHHHHHHHHHH
Confidence 999999999999 7778999999999999999999999999999998664 67889999999887 6778888888777
Q ss_pred CCC--CCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEE
Q 003887 466 GMI--DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVV 543 (789)
Q Consensus 466 ~~~--~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI 543 (789)
... ..+++||||+++..|+.|+..|...++++..|||+.+|.+|+.+|+.|++|++.|||||++|+||||||+|++||
T Consensus 335 ~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVI 414 (519)
T KOG0331|consen 335 DISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVI 414 (519)
T ss_pred HHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEE
Confidence 664 566999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHHHHHHcCCCccHHHHHHHHhc
Q 003887 544 NFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMKD 608 (789)
Q Consensus 544 ~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~L~~~~~~vp~~l~~~a~~~ 608 (789)
|||+|.++++|+||+|||||+| +.|.+++|++..+...+..+++.|..++|.||+.|..++...
T Consensus 415 nydfP~~vEdYVHRiGRTGRa~-~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~~~~~~ 478 (519)
T KOG0331|consen 415 NYDFPNNVEDYVHRIGRTGRAG-KKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLEYARVS 478 (519)
T ss_pred eCCCCCCHHHHHhhcCccccCC-CCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHHHHhhc
Confidence 9999999999999999999999 689999999999999999999999999999999999987643
No 3
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-78 Score=627.32 Aligned_cols=439 Identities=42% Similarity=0.694 Sum_probs=405.5
Q ss_pred CCCCccccCccccccccCChhccCCCHHHHHHHHHHc-Ccccc------cCCCCCCCCCccc-CCCCHHHHHHHHHcCCC
Q 003887 175 LDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSL-AIRVS------GFDVPRPVKTFED-CGFSTQLMHAISKQGYE 246 (789)
Q Consensus 175 ~~~~~~~~~~f~k~fy~~~~~i~~~s~~~~~~~r~~~-~i~v~------~~~~P~pi~sf~~-~~l~~~l~~~l~~~g~~ 246 (789)
...+|...+|..|+||.++++.++|+..++.+++++. .|.+. ..++|+|+.+|++ +..-+.++++|++.||.
T Consensus 162 e~~kW~~lpPi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFq 241 (629)
T KOG0336|consen 162 EKFKWAKLPPIKKNFYKESNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQ 241 (629)
T ss_pred hhcccccCCchhhhhhhcCchhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCC
Confidence 3456778889999999999999999999999999876 55543 2468999999998 57889999999999999
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccc-ccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003887 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPEL-QKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (789)
Q Consensus 247 ~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~-~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~ 325 (789)
+|||||.|+||.+|+|.|++++|.||+|||++||+|-+.|+..++.. ....+|.+|+++|||+||.|+.-+++++.- .
T Consensus 242 KPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysy-n 320 (629)
T KOG0336|consen 242 KPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSY-N 320 (629)
T ss_pred CCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhh-c
Confidence 99999999999999999999999999999999999999999887643 345789999999999999999999988864 4
Q ss_pred CcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcCCCce
Q 003887 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405 (789)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q 405 (789)
+++.+|+|||.+..+|+..++.+.+|||+||++|.++...+.++|..+.||||||||+|++|+|+++|++|+-.++|++|
T Consensus 321 g~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRq 400 (629)
T KOG0336|consen 321 GLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQ 400 (629)
T ss_pred CcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCcHHHHHHHHHHhCCCeEEeeccccCc-cccceEEEEecCCCcchHHHHHHhcCCCCCCCcEEEEecccccHH
Q 003887 406 TLLFSATMPRKVEKLAREILSDPVRVTVGEVGMA-NEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVD 484 (789)
Q Consensus 406 ~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~-~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~ 484 (789)
++|.|||||..+..|+..|+.+|..+.++..... ...+.|.+ ++..+..|+..+..++....+..++||||..+..|+
T Consensus 401 tvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i-~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD 479 (629)
T KOG0336|consen 401 TVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNI-IVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMAD 479 (629)
T ss_pred eeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeE-EecccHHHHHHHHHHHHhcCCCceEEEEEechhhhh
Confidence 9999999999999999999999999999988754 56677777 777888899888888888888889999999999999
Q ss_pred HHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCC
Q 003887 485 EIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRA 564 (789)
Q Consensus 485 ~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~ 564 (789)
.|...|.-.|+.+..|||+..|.+|+.+++.|++|+++||||||+++||||+++++||+|||+|.+++.|+||+||+||+
T Consensus 480 ~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRa 559 (629)
T KOG0336|consen 480 HLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRA 559 (629)
T ss_pred hccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEEccccHHHHHHHHHHHHHcCCCccHHHHHHHHhcCccccccc
Q 003887 565 GDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGRFRSKRD 616 (789)
Q Consensus 565 G~~~G~~i~l~~~~d~~~~~~l~~~L~~~~~~vp~~l~~~a~~~~~~~~~~~ 616 (789)
| +.|++++|++.+|..++.+|+++|+.+.|.||.+|..+|.+......+|.
T Consensus 560 G-r~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL~~mAeryk~~q~kR~ 610 (629)
T KOG0336|consen 560 G-RTGTSISFLTRNDWSMAEELIQILERAEQEVPDELVRMAERYKLKQSKRD 610 (629)
T ss_pred C-CCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHhhhcccc
Confidence 9 78999999999999999999999999999999999999986544433333
No 4
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-77 Score=688.10 Aligned_cols=438 Identities=49% Similarity=0.803 Sum_probs=423.1
Q ss_pred cCCCCCCCCCccccCccccccccCChhccCCCHHHHHHHHHHcC-cccccCCCCCCCCCcccCCCCHHHHHHHHHcCCCC
Q 003887 169 IEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLA-IRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEK 247 (789)
Q Consensus 169 ~~~l~~~~~~~~~~~~f~k~fy~~~~~i~~~s~~~~~~~r~~~~-i~v~~~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ 247 (789)
...+..++|+.+.|+||+++||.+.++|..|+..++..++..+. |.+.+..+|+|+++|.++|+...++..+++.||.+
T Consensus 308 ~~~~~~~~~S~~~~epFRknfy~e~~di~~ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k 387 (997)
T KOG0334|consen 308 KKNLIQVDHSKISYEPFRKNFYIEVRDIKRMSAAEVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEK 387 (997)
T ss_pred ccceeecccccccchhhhhcccccchhHHHHHHHHHHHhhcCccceeeccCCCCcccchHhhCCchHHHHHHHHHhcCCC
Confidence 34677789999999999999999999999999999999999996 99999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCc
Q 003887 248 PTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGI 327 (789)
Q Consensus 248 ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i 327 (789)
|||||.+|||+|++|+|||++|.||||||++|+||++.|++.++.+....||.+|||+|||+||.||.+++++|++.+++
T Consensus 388 ~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~i 467 (997)
T KOG0334|consen 388 PTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGI 467 (997)
T ss_pred CcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhc---cccccceeEEEEcccchhccCCChHHHHHHHhhcCCCc
Q 003887 328 RVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK---ALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR 404 (789)
Q Consensus 328 ~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~---~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~ 404 (789)
+++++|||.....++.+++++++|+||||+++++++..+ ..+|.++.+||+||||+|++++|.++++.|+.++++++
T Consensus 468 r~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdr 547 (997)
T KOG0334|consen 468 RVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDR 547 (997)
T ss_pred eEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchhh
Confidence 999999999999999999999999999999999998653 45678888999999999999999999999999999999
Q ss_pred eEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHHHHhcCCCCCCCcEEEEecccccHH
Q 003887 405 QTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVD 484 (789)
Q Consensus 405 q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~ 484 (789)
|+++||||+|+.++.+++..+..|+.+.++.....+..+.|.+.++.....|+..|+++|......+++||||..+..|+
T Consensus 548 QtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d 627 (997)
T KOG0334|consen 548 QTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKAD 627 (997)
T ss_pred hhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHH
Confidence 99999999999999999999999999999999999999999999999889999999999999888999999999999999
Q ss_pred HHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCC
Q 003887 485 EIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRA 564 (789)
Q Consensus 485 ~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~ 564 (789)
.|...|.+.++.|..|||+.++.+|..+++.|+++.+.+||||++++||||++.+.+|||||+|....+|+||+|||||+
T Consensus 628 ~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgra 707 (997)
T KOG0334|consen 628 ALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRA 707 (997)
T ss_pred HHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEEccccHHHHHHHHHHHHHcCCCccHHHHHHHHh
Q 003887 565 GDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMK 607 (789)
Q Consensus 565 G~~~G~~i~l~~~~d~~~~~~l~~~L~~~~~~vp~~l~~~a~~ 607 (789)
| +.|.|++|+++.+..++.+|+++|+.+++.+|..|..+..+
T Consensus 708 g-rkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P~~l~~l~~~ 749 (997)
T KOG0334|consen 708 G-RKGAAVTFITPDQLKYAGDLCKALELSKQPVPKLLQALSER 749 (997)
T ss_pred C-ccceeEEEeChHHhhhHHHHHHHHHhccCCCchHHHHHHHH
Confidence 9 67999999999999999999999999999999988887753
No 5
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1e-76 Score=631.78 Aligned_cols=491 Identities=38% Similarity=0.618 Sum_probs=421.4
Q ss_pred ccCCCCCCchhHHHH-HhhhhcCchhhhhhhhcCCCChHHHHHHHhhhccCCCCCC--CCCChhhhhhhccCCCCCCCCC
Q 003887 102 RYKDDDEEDPMESFL-MAKKDVGLTLAADALRAGYDSDEEVYAAAKAVDAGMLDYD--SDDNPVVVEKKKIEPIPALDHS 178 (789)
Q Consensus 102 ~~~d~deed~~e~~~-~~~~~~~~~~~~~~~~~g~~~~ee~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~ 178 (789)
+.+++..+|-...+. -+.......+++++..+|.|..++..+.++.. ++.+.. +++.+...+.-...+.+. .
T Consensus 128 ~fdWda~edT~~d~~~l~~~~~~i~~fgrG~~ag~d~~~qkk~~s~~~--~~~e~r~t~~~ke~~~~~~qk~~k~~---~ 202 (673)
T KOG0333|consen 128 VFDWDASEDTSNDYNPLYSSRHDIQLFGRGFVAGIDVKEQKKEKSKYG--EMMEKRRTEDEKEQEEELLQKVCKKE---A 202 (673)
T ss_pred EEeecccccccccchhhhcCcccchhhccccccccchHHHHhhhhhhh--hHhhhhcchhhhhhHHHHHHHhhhhh---h
Confidence 456665554332221 12223445678999999999888876655522 222211 111111111100111111 1
Q ss_pred ccccCccccccccCChhccCCCHHHHHHHHHHcCcccccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH
Q 003887 179 LIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPI 258 (789)
Q Consensus 179 ~~~~~~f~k~fy~~~~~i~~~s~~~~~~~r~~~~i~v~~~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~ 258 (789)
...|+ ...|.+. .+..|++.+|..|+..++|.++|..+|.|+.+|++.+||..+++.|.+.||..|+|||.++||.
T Consensus 203 k~~~D---drhW~~k-~l~Em~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl 278 (673)
T KOG0333|consen 203 KSGWD---DRHWSEK-VLAEMTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPL 278 (673)
T ss_pred hcccc---ccchhhh-hHHhcCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccc
Confidence 11222 2334443 4788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccc----CCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEc
Q 003887 259 ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQK----EEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYG 334 (789)
Q Consensus 259 il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~----~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~g 334 (789)
+++.+|+|++|+||||||++|++|+|.+|...|++.. ..||.++||+|||+||+||.++..+|++.++++++.++|
T Consensus 279 ~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvig 358 (673)
T KOG0333|consen 279 GLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIG 358 (673)
T ss_pred hhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEec
Confidence 9999999999999999999999999999998885543 469999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcCC------------
Q 003887 335 GMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP------------ 402 (789)
Q Consensus 335 g~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~------------ 402 (789)
|.+..+|-..+..+|+|+|+||++|++.|.+.++.|..+.+||+||||+|.|++|++++..+|.+++.
T Consensus 359 g~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~ 438 (673)
T KOG0333|consen 359 GLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEG 438 (673)
T ss_pred ccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred -------------CceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHHHHhcCCCCC
Q 003887 403 -------------DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMID 469 (789)
Q Consensus 403 -------------~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~ 469 (789)
-+|++|||||+|+.++.|++.||.+|+.++++..+...+.+.|.+..+.. ..|+..|.++|... .
T Consensus 439 ~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~e-d~k~kkL~eil~~~-~ 516 (673)
T KOG0333|consen 439 EERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSE-DEKRKKLIEILESN-F 516 (673)
T ss_pred HHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecc-hHHHHHHHHHHHhC-C
Confidence 17999999999999999999999999999999999999999999999865 45699999999876 4
Q ss_pred CCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEcCCC
Q 003887 470 DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIAR 549 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~ 549 (789)
..++|||+|+++.|+.|++.|.+.|++|..|||+.+|++|+.+++.|++|...|||||++++||||||+|.+|||||++.
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmak 596 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAK 596 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhh
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHHHHH-HcCCCccHHHHHH
Q 003887 550 DMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLI-AAGQNVSMELMDL 604 (789)
Q Consensus 550 s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~L~-~~~~~vp~~l~~~ 604 (789)
++++|+||||||||+| +.|++++|+++.|...+.+|+..|. ......|++|...
T Consensus 597 sieDYtHRIGRTgRAG-k~GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~Ela~h 651 (673)
T KOG0333|consen 597 SIEDYTHRIGRTGRAG-KSGTAISFLTPADTAVFYDLKQALRESVKSHCPPELANH 651 (673)
T ss_pred hHHHHHHHhccccccc-cCceeEEEeccchhHHHHHHHHHHHHhhhccCChhhccC
Confidence 9999999999999999 7899999999999999999998887 5667788887654
No 6
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=5.9e-73 Score=654.68 Aligned_cols=438 Identities=47% Similarity=0.748 Sum_probs=406.9
Q ss_pred cCCCCCCCCCccccCccccccccCChhccCCCHHHHHHHHHHcCccc-ccCCCCCCCCCcccCCCCHHHHHHHHHcCCCC
Q 003887 169 IEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRV-SGFDVPRPVKTFEDCGFSTQLMHAISKQGYEK 247 (789)
Q Consensus 169 ~~~l~~~~~~~~~~~~f~k~fy~~~~~i~~~s~~~~~~~r~~~~i~v-~~~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ 247 (789)
.+.++.++|+...+.||.|+||.+++.+..++.+++..+++...+.+ .+..+|+|+.+|++++|++.+++.|.+.||.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~ 152 (545)
T PTZ00110 73 GKRLQPIDWKSINLVPFEKNFYKEHPEVSALSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFTE 152 (545)
T ss_pred ccccCCCCCccccccchhhhcccCChhhhcCCHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCC
Confidence 34677888888899999999999999999999999999999998886 68899999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCc
Q 003887 248 PTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGI 327 (789)
Q Consensus 248 ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i 327 (789)
|||+|.++||.+++|+|+|++++||||||++|++|++.+++.++......+|.+|||+|||+||.|+.+++++|....++
T Consensus 153 pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i 232 (545)
T PTZ00110 153 PTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKI 232 (545)
T ss_pred CCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCc
Confidence 99999999999999999999999999999999999999998876665667899999999999999999999999988889
Q ss_pred EEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEE
Q 003887 328 RVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTL 407 (789)
Q Consensus 328 ~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~l 407 (789)
++.+++||.....+...+..+++|||+||++|++++......|.++++|||||||+|++++|..++..|+..+++++|++
T Consensus 233 ~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l 312 (545)
T PTZ00110 233 RNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTL 312 (545)
T ss_pred cEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEE
Confidence 99999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred EEeccCcHHHHHHHHHHhC-CCeEEeecccc-CccccceEEEEecCCCcchHHHHHHhcCCCC-CCCcEEEEecccccHH
Q 003887 408 LFSATMPRKVEKLAREILS-DPVRVTVGEVG-MANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVD 484 (789)
Q Consensus 408 l~SATl~~~v~~l~~~~l~-~p~~i~i~~~~-~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~ 484 (789)
+||||+|..++.+++.++. +|+.+.++... .....+.+.+..+. ...|...|..+|.... ...++||||+++..|+
T Consensus 313 ~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~-~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~ 391 (545)
T PTZ00110 313 MWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVE-EHEKRGKLKMLLQRIMRDGDKILIFVETKKGAD 391 (545)
T ss_pred EEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEe-chhHHHHHHHHHHHhcccCCeEEEEecChHHHH
Confidence 9999999999999999986 58888776654 34466777776664 4567777777776654 5669999999999999
Q ss_pred HHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCC
Q 003887 485 EIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRA 564 (789)
Q Consensus 485 ~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~ 564 (789)
.|+..|...++.+..+||++++.+|..+++.|++|+++|||||++++|||||++|++|||||+|.++..|+||+||+||.
T Consensus 392 ~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~ 471 (545)
T PTZ00110 392 FLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRA 471 (545)
T ss_pred HHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEEccccHHHHHHHHHHHHHcCCCccHHHHHHHHhc
Q 003887 565 GDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMKD 608 (789)
Q Consensus 565 G~~~G~~i~l~~~~d~~~~~~l~~~L~~~~~~vp~~l~~~a~~~ 608 (789)
| +.|.|++|+++.+...+.+|++.|..++|.||++|.+++...
T Consensus 472 G-~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~~~~~ 514 (545)
T PTZ00110 472 G-AKGASYTFLTPDKYRLARDLVKVLREAKQPVPPELEKLSNER 514 (545)
T ss_pred C-CCceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHHHHHHh
Confidence 9 679999999999999999999999999999999999998754
No 7
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=7.5e-74 Score=588.85 Aligned_cols=425 Identities=43% Similarity=0.675 Sum_probs=400.9
Q ss_pred CccccCccccccccCChhccCCCHHHHHHHHHHcCcccccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHH
Q 003887 178 SLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALP 257 (789)
Q Consensus 178 ~~~~~~~f~k~fy~~~~~i~~~s~~~~~~~r~~~~i~v~~~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~ 257 (789)
.-+.|+.--+.-|.++-.+.+|++++.+..|+.+.|.+.|..+|+|+.+|.++.||..+++.|++.|+.+|||||.|.+|
T Consensus 123 kGi~Y~ePi~T~WkPP~hir~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlP 202 (610)
T KOG0341|consen 123 KGITYEEPIKTAWKPPRHIRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLP 202 (610)
T ss_pred CCCcccCcchhccCCcHHHHHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcc
Confidence 34677776777799998999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCc---ccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc------CcE
Q 003887 258 IILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQP---ELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH------GIR 328 (789)
Q Consensus 258 ~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~---~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~------~i~ 328 (789)
.+++|||+|.+|-||||||++|++|++...+.+. ++.+..||..|||||+|+||.|+++.+..++..+ .++
T Consensus 203 vvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lR 282 (610)
T KOG0341|consen 203 VVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELR 282 (610)
T ss_pred eEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhh
Confidence 9999999999999999999999999999888753 4556789999999999999999999999987654 378
Q ss_pred EEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEE
Q 003887 329 VSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLL 408 (789)
Q Consensus 329 v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll 408 (789)
+.+++||.+..+|...++.|.+|+|+||++|.+++.++..+|.-+.||++||||+|+++||+..++.|+..+..++|+++
T Consensus 283 s~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLL 362 (610)
T KOG0341|consen 283 SLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLL 362 (610)
T ss_pred hhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHHHHhcCCCCCCCcEEEEecccccHHHHHH
Q 003887 409 FSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIES 488 (789)
Q Consensus 409 ~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~ 488 (789)
||||+|..++.+++.-+..|+.+.++..+.+.-++.|.+.++.. ..|+..|++.|.+. ..++||||..+.+++.+.+
T Consensus 363 FSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkq-EaKiVylLeCLQKT--~PpVLIFaEkK~DVD~IhE 439 (610)
T KOG0341|consen 363 FSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQ-EAKIVYLLECLQKT--SPPVLIFAEKKADVDDIHE 439 (610)
T ss_pred eeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHh-hhhhhhHHHHhccC--CCceEEEeccccChHHHHH
Confidence 99999999999999999999999999999999999999888854 57889999999874 5689999999999999999
Q ss_pred HHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCC
Q 003887 489 QLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKD 568 (789)
Q Consensus 489 ~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~ 568 (789)
||--.|..++.|||+.+|++|..+++.|+.|+.+||||||+++.|||+|++.||||||+|..+++|+||||||||.| ++
T Consensus 440 YLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg-~~ 518 (610)
T KOG0341|consen 440 YLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSG-KT 518 (610)
T ss_pred HHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCC-Cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 78
Q ss_pred eEEEEEEccc-cHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 003887 569 GTAYTLVTQK-EARFAGELVNSLIAAGQNVSMELMDLAM 606 (789)
Q Consensus 569 G~~i~l~~~~-d~~~~~~l~~~L~~~~~~vp~~l~~~a~ 606 (789)
|.+.+|+.++ +...+.+|...|..++|.+|+-|..++.
T Consensus 519 GiATTfINK~~~esvLlDLK~LL~EakQ~vP~~L~~L~~ 557 (610)
T KOG0341|consen 519 GIATTFINKNQEESVLLDLKHLLQEAKQEVPPVLAELAG 557 (610)
T ss_pred ceeeeeecccchHHHHHHHHHHHHHhhccCCHHHHHhCC
Confidence 9999999986 5677889999999999999999998875
No 8
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.4e-68 Score=616.36 Aligned_cols=482 Identities=29% Similarity=0.503 Sum_probs=415.0
Q ss_pred CCCchhHHHHHhhhh--cCchhhhhhhhcCC----CChHHHHHH-HhhhccCCCCCCCCCChhhhhhhccCCCCCCCCCc
Q 003887 107 DEEDPMESFLMAKKD--VGLTLAADALRAGY----DSDEEVYAA-AKAVDAGMLDYDSDDNPVVVEKKKIEPIPALDHSL 179 (789)
Q Consensus 107 deed~~e~~~~~~~~--~~~~~~~~~~~~g~----~~~ee~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (789)
+++++.-++...+.| .+++.|.-|..||. ..|++++.. +++ ...... ...-..+++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~-~~~~~~~~~~~ 73 (518)
T PLN00206 9 HEDDVVKERSIEQREALPGEPKCVVCGRYGEYICDETDDDICSLECKQ--------------ALLRRV-AKSRVAVGAPK 73 (518)
T ss_pred ccchhhhhhhHHhcCCCCCCceEEEecCccceeccCCCCccccHHHHH--------------HHHHHH-hhccCCcCCCc
Confidence 344555556555555 66789999999994 233333221 111 111111 12233455555
Q ss_pred ccc-CccccccccCChhcc-CCCHHHHHHHHHHcCcccccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHH
Q 003887 180 IDY-EPFNKDFYQDSASIS-GMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALP 257 (789)
Q Consensus 180 ~~~-~~f~k~fy~~~~~i~-~~s~~~~~~~r~~~~i~v~~~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~ 257 (789)
.++ .+|+++||..++... .|+..++..+++.+.|.+.|..+|+|+.+|++++|++.+++.|.+.||..|||+|.++||
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip 153 (518)
T PLN00206 74 PKRLPATDECFYVRDPGSTSGLSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIP 153 (518)
T ss_pred hhhcCCcCCcCCccCcchhccCCHHHHHHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 554 778999999888765 499999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcc--cccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcC
Q 003887 258 IILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPE--LQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGG 335 (789)
Q Consensus 258 ~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~--~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg 335 (789)
.+++|+|+|++++||||||++|++|++.+++.... .....++++|||+|||+||.|+.+.++.+....++++.+++||
T Consensus 154 ~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG 233 (518)
T PLN00206 154 AALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGG 233 (518)
T ss_pred HHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECC
Confidence 99999999999999999999999999999875421 1223678999999999999999999999988888999999999
Q ss_pred CChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEeccCcH
Q 003887 336 MSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPR 415 (789)
Q Consensus 336 ~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~ 415 (789)
.....+...+..+++|||+||++|.+++.+..+.+.++.+|||||||+|++++|..++..++..++ .+|+++||||+++
T Consensus 234 ~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~ 312 (518)
T PLN00206 234 DAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSP 312 (518)
T ss_pred cchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCH
Confidence 999889888989999999999999999998888999999999999999999999999999998884 6899999999999
Q ss_pred HHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHHHHhcCCCC-CCCcEEEEecccccHHHHHHHHHH-c
Q 003887 416 KVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQ-K 493 (789)
Q Consensus 416 ~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~-~ 493 (789)
.++.++..++.++..+.++........+.+.+..+.. ..|...|.++|.... ...++||||+++..++.|+..|.. .
T Consensus 313 ~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~-~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~ 391 (518)
T PLN00206 313 EVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVET-KQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVT 391 (518)
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccc-hhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhcc
Confidence 9999999999999999888777667777787776643 456667777765432 235899999999999999999975 6
Q ss_pred CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEE
Q 003887 494 GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYT 573 (789)
Q Consensus 494 g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~ 573 (789)
++.+..+||++++.+|..+++.|++|+++|||||++++||||||+|++|||||+|.++.+|+||+||+||.| ..|.+++
T Consensus 392 g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g-~~G~ai~ 470 (518)
T PLN00206 392 GLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMG-EKGTAIV 470 (518)
T ss_pred CcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCC-CCeEEEE
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999 6799999
Q ss_pred EEccccHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 003887 574 LVTQKEARFAGELVNSLIAAGQNVSMELMDLAM 606 (789)
Q Consensus 574 l~~~~d~~~~~~l~~~L~~~~~~vp~~l~~~a~ 606 (789)
|++..+...+.++++.|..+++.+|++|+++..
T Consensus 471 f~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~~~ 503 (518)
T PLN00206 471 FVNEEDRNLFPELVALLKSSGAAIPRELANSRY 503 (518)
T ss_pred EEchhHHHHHHHHHHHHHHcCCCCCHHHHhChh
Confidence 999999999999999999999999999998653
No 9
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-68 Score=553.83 Aligned_cols=366 Identities=39% Similarity=0.642 Sum_probs=346.3
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEE
Q 003887 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (789)
Q Consensus 223 pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vL 302 (789)
...+|.++++.+.|+++++..++.+||+||+++||.++.|+|||+.|+||||||.+|+||++++++.++. .+++|
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~-----~~~~l 133 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK-----LFFAL 133 (476)
T ss_pred hhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC-----CceEE
Confidence 3578999999999999999999999999999999999999999999999999999999999999998753 48999
Q ss_pred EEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHh-hccccccceeEEEEccc
Q 003887 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLK-MKALTMSRVTYLVLDEA 381 (789)
Q Consensus 303 Il~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~-~~~~~l~~i~~lVlDEa 381 (789)
||+||||||.||.+.+..+....+++++++.||.....|...+.+.+|||||||++|++++. .+.+.+..++++|+|||
T Consensus 134 VLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEA 213 (476)
T KOG0330|consen 134 VLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEA 213 (476)
T ss_pred EecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchH
Confidence 99999999999999999999999999999999999999999999999999999999999998 57788999999999999
Q ss_pred chhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHHH
Q 003887 382 DRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLL 461 (789)
Q Consensus 382 h~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~ 461 (789)
|++++++|.+.+..|+..++..+|+++||||+|..+.+|.+..+.+|..+.+.......+.+.|.+..++. ..|...|+
T Consensus 214 DrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~-k~K~~yLV 292 (476)
T KOG0330|consen 214 DRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPG-KDKDTYLV 292 (476)
T ss_pred HhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccc-cccchhHH
Confidence 99999999999999999999999999999999999999999999999999999888889999999988864 56778888
Q ss_pred HhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccE
Q 003887 462 EKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKS 541 (789)
Q Consensus 462 ~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~ 541 (789)
.+|.+.. ...+||||++...++.++-.|+..|+.+..|||.|+|..|.-+++.|++|.+.||||||+++||||||.|++
T Consensus 293 ~ll~e~~-g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~ 371 (476)
T KOG0330|consen 293 YLLNELA-GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDV 371 (476)
T ss_pred HHHHhhc-CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceE
Confidence 8887653 479999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHHHHHHcCCC
Q 003887 542 VVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQN 596 (789)
Q Consensus 542 VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~L~~~~~~ 596 (789)
|||||.|.+..+|+||+||++|+| +.|.+++|++..|.+.+.+|...+......
T Consensus 372 VVNyDiP~~skDYIHRvGRtaRaG-rsG~~ItlVtqyDve~~qrIE~~~gkkl~~ 425 (476)
T KOG0330|consen 372 VVNYDIPTHSKDYIHRVGRTARAG-RSGKAITLVTQYDVELVQRIEHALGKKLPE 425 (476)
T ss_pred EEecCCCCcHHHHHHHcccccccC-CCcceEEEEehhhhHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999 789999999999999999988877666544
No 10
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-67 Score=568.63 Aligned_cols=393 Identities=44% Similarity=0.716 Sum_probs=368.5
Q ss_pred CcccccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCc
Q 003887 212 AIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQP 291 (789)
Q Consensus 212 ~i~v~~~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~ 291 (789)
.+.+.|.++|.++.+|.+..+...+..+++..+|..|||+|+.+||.+..|+++++||+||||||.+||+|++.++++..
T Consensus 61 ~v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~ 140 (482)
T KOG0335|consen 61 PVKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEG 140 (482)
T ss_pred eeeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcC
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred cccc-----CCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhc
Q 003887 292 ELQK-----EEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK 366 (789)
Q Consensus 292 ~~~~-----~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~ 366 (789)
.... ...|.+|||+|||+||.|++++++++.....++++.+|||.+...+...+..+|||+||||++|.++++.+
T Consensus 141 ~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g 220 (482)
T KOG0335|consen 141 PEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERG 220 (482)
T ss_pred cccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcc
Confidence 3221 12599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeEEEEcccchhcc-CCChHHHHHHHhhcCC----CceEEEEeccCcHHHHHHHHHHhCC-CeEEeeccccCcc
Q 003887 367 ALTMSRVTYLVLDEADRMFD-LGFEPQIRSIVGQIRP----DRQTLLFSATMPRKVEKLAREILSD-PVRVTVGEVGMAN 440 (789)
Q Consensus 367 ~~~l~~i~~lVlDEah~m~~-~~f~~~i~~il~~~~~----~~q~ll~SATl~~~v~~l~~~~l~~-p~~i~i~~~~~~~ 440 (789)
.+.|..+.||||||||+|+| ++|.++|+.|+..... .+|++|||||+|..++.++..++.+ .+.+.++..+...
T Consensus 221 ~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~ 300 (482)
T KOG0335|consen 221 KISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTS 300 (482)
T ss_pred eeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeecccc
Confidence 99999999999999999999 9999999999988754 7899999999999999999999987 8999999999999
Q ss_pred ccceEEEEecCCCcchHHHHHHhcCCCC---CCC-----cEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHH
Q 003887 441 EDITQVVHVIPSDAEKLPWLLEKLPGMI---DDG-----DVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEI 512 (789)
Q Consensus 441 ~~i~q~~~~~~~~~~k~~~L~~~L~~~~---~~~-----kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~ 512 (789)
.++.|.+.++. +..|...|+++|.... ..+ ++||||.+++.|+.|+.+|...++++..|||+.+|.+|.++
T Consensus 301 ~ni~q~i~~V~-~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~a 379 (482)
T KOG0335|consen 301 ENITQKILFVN-EMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQA 379 (482)
T ss_pred ccceeEeeeec-chhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHH
Confidence 99999999985 4567788888887544 234 79999999999999999999999999999999999999999
Q ss_pred HHHhhcCCccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHHHHHH
Q 003887 513 LQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIA 592 (789)
Q Consensus 513 l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~L~~ 592 (789)
++.|++|.+.|||||++++||||||+|+||||||+|.+..+|+||||||||.| ..|.++.|+...+...+..|++.|..
T Consensus 380 l~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~G-n~G~atsf~n~~~~~i~~~L~~~l~e 458 (482)
T KOG0335|consen 380 LNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVG-NGGRATSFFNEKNQNIAKALVEILTE 458 (482)
T ss_pred HHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCC-CCceeEEEeccccchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 68999999999999999999999999
Q ss_pred cCCCccHHHHHHHH
Q 003887 593 AGQNVSMELMDLAM 606 (789)
Q Consensus 593 ~~~~vp~~l~~~a~ 606 (789)
++|.||+||.+++.
T Consensus 459 a~q~vP~wl~~~~~ 472 (482)
T KOG0335|consen 459 ANQEVPQWLSELSR 472 (482)
T ss_pred hcccCcHHHHhhhh
Confidence 99999999998554
No 11
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.1e-67 Score=553.83 Aligned_cols=363 Identities=38% Similarity=0.579 Sum_probs=336.7
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEE
Q 003887 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (789)
Q Consensus 225 ~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl 304 (789)
.+|.+++|+..|++++...||..|||||.++||..+-|+|++.||.||||||.+|++|+|..++-.|.. ....+||||
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~--~~~TRVLVL 258 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK--VAATRVLVL 258 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc--CcceeEEEE
Confidence 579999999999999999999999999999999999999999999999999999999999999887643 335689999
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhh-ccccccceeEEEEcccch
Q 003887 305 APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM-KALTMSRVTYLVLDEADR 383 (789)
Q Consensus 305 ~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~-~~~~l~~i~~lVlDEah~ 383 (789)
||||+||.|++..+++++...++.+++++||.+...|-..|+..+||||+|||+|++++.+ ..++|.+|.+||+||||+
T Consensus 259 ~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADR 338 (691)
T KOG0338|consen 259 VPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADR 338 (691)
T ss_pred eccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHH
Confidence 9999999999999999999999999999999999999999999999999999999999976 467899999999999999
Q ss_pred hccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCC--CcchHHHHH
Q 003887 384 MFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPS--DAEKLPWLL 461 (789)
Q Consensus 384 m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~--~~~k~~~L~ 461 (789)
|++.+|..++..|+..++..+|+++||||+...+.+|+.--|..|+.+.+.........++|.|..+.. ...+-..|.
T Consensus 339 MLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~ 418 (691)
T KOG0338|consen 339 MLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLA 418 (691)
T ss_pred HHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHH
Confidence 999999999999999999999999999999999999999999999999999888888888888776642 233444455
Q ss_pred HhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccE
Q 003887 462 EKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKS 541 (789)
Q Consensus 462 ~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~ 541 (789)
.++... ...++|||+.++..|.++.-.|--.|+++.-|||.++|.+|.+.++.|++++++||||||+++|||||++|.+
T Consensus 419 ~l~~rt-f~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~t 497 (691)
T KOG0338|consen 419 SLITRT-FQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQT 497 (691)
T ss_pred HHHHHh-cccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeE
Confidence 555444 3579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHHHHH
Q 003887 542 VVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLI 591 (789)
Q Consensus 542 VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~L~ 591 (789)
||||++|.++..|+||+|||.|+| +.|.+++|+...|..+++.+++.-.
T Consensus 498 VINy~mP~t~e~Y~HRVGRTARAG-RaGrsVtlvgE~dRkllK~iik~~~ 546 (691)
T KOG0338|consen 498 VINYAMPKTIEHYLHRVGRTARAG-RAGRSVTLVGESDRKLLKEIIKSST 546 (691)
T ss_pred EEeccCchhHHHHHHHhhhhhhcc-cCcceEEEeccccHHHHHHHHhhhh
Confidence 999999999999999999999999 7899999999999999999988743
No 12
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-65 Score=584.56 Aligned_cols=364 Identities=48% Similarity=0.747 Sum_probs=338.0
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEE
Q 003887 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (789)
Q Consensus 225 ~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl 304 (789)
..|++++|++.++++|.+.||..|||||.++||.++.|+|++++|+||||||++|++|+|.++..... ....+ +|||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~--~~~~~-aLil 105 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVE--RKYVS-ALIL 105 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccc--cCCCc-eEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999764311 11122 9999
Q ss_pred cCcHHHHHHHHHHHHHHhhhc-CcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccch
Q 003887 305 APTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (789)
Q Consensus 305 ~PTreLa~Qi~~~~~k~~~~~-~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~ 383 (789)
+||||||.|+++++.+++... ++++++++||.+...+...+..++||||+||+||++++.+..+.+..+.++|+||||+
T Consensus 106 ~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADr 185 (513)
T COG0513 106 APTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADR 185 (513)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhh
Confidence 999999999999999999988 7999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccC--ccccceEEEEecCCCcchHHHHH
Q 003887 384 MFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGM--ANEDITQVVHVIPSDAEKLPWLL 461 (789)
Q Consensus 384 m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~--~~~~i~q~~~~~~~~~~k~~~L~ 461 (789)
|+++||.+.+..|+..++.++|+++||||+|..+..+++.++.+|..+.+..... ....|.|.+..+.....|+..|.
T Consensus 186 mLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~ 265 (513)
T COG0513 186 MLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLL 265 (513)
T ss_pred hhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888875444 78899999999976556888888
Q ss_pred HhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccE
Q 003887 462 EKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKS 541 (789)
Q Consensus 462 ~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~ 541 (789)
.++... ...++||||+++..++.|+..|...|+.+..|||+|+|.+|.++++.|++|.++||||||+++|||||++|++
T Consensus 266 ~ll~~~-~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~ 344 (513)
T COG0513 266 KLLKDE-DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSH 344 (513)
T ss_pred HHHhcC-CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccce
Confidence 888754 3347999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccc-cHHHHHHHHHHHHHc
Q 003887 542 VVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK-EARFAGELVNSLIAA 593 (789)
Q Consensus 542 VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~-d~~~~~~l~~~L~~~ 593 (789)
|||||+|.+++.|+||+|||||+| +.|.+++|+++. +...+..+.+.+...
T Consensus 345 VinyD~p~~~e~yvHRiGRTgRaG-~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 345 VINYDLPLDPEDYVHRIGRTGRAG-RKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred eEEccCCCCHHHheeccCccccCC-CCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999 789999999986 888888888887555
No 13
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.8e-62 Score=557.16 Aligned_cols=364 Identities=40% Similarity=0.656 Sum_probs=328.3
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccc-CCCCEEEEE
Q 003887 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQK-EEGPIGVIC 304 (789)
Q Consensus 226 sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~-~~gp~vLIl 304 (789)
+|++++|++.+++.|.+.||..|||+|.++||.+++++|+|+++|||+|||++|++|++..+........ ...+++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999865432211 234589999
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchh
Q 003887 305 APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM 384 (789)
Q Consensus 305 ~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m 384 (789)
+||++||.|+.+.++.+....++++..++||.+...+...+..+++|||+||++|++++....+.++++++|||||||+|
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l 161 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH
Confidence 99999999999999999988899999999999998888888889999999999999999888888999999999999999
Q ss_pred ccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHHHHhc
Q 003887 385 FDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKL 464 (789)
Q Consensus 385 ~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L 464 (789)
++++|...+..++..++..+|+++||||+++.+..++.+++.+|..+.+.........+.+.+..+.. ..+...|..++
T Consensus 162 l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~l~ 240 (456)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDK-KRKRELLSQMI 240 (456)
T ss_pred hccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCH-HHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888876666666677777766643 34444454444
Q ss_pred CCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEE
Q 003887 465 PGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN 544 (789)
Q Consensus 465 ~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~ 544 (789)
.. ....++||||+++..++.|++.|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||||+|++|||
T Consensus 241 ~~-~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~ 319 (456)
T PRK10590 241 GK-GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVN 319 (456)
T ss_pred Hc-CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEE
Confidence 33 23468999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHHHHHH
Q 003887 545 FDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIA 592 (789)
Q Consensus 545 ~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~L~~ 592 (789)
|++|.++.+|+||+||+||.| ..|.|++|++..|..++..+.+.|..
T Consensus 320 ~~~P~~~~~yvqR~GRaGR~g-~~G~ai~l~~~~d~~~~~~ie~~l~~ 366 (456)
T PRK10590 320 YELPNVPEDYVHRIGRTGRAA-ATGEALSLVCVDEHKLLRDIEKLLKK 366 (456)
T ss_pred eCCCCCHHHhhhhccccccCC-CCeeEEEEecHHHHHHHHHHHHHhcC
Confidence 999999999999999999999 67999999999999988888777643
No 14
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.3e-63 Score=491.22 Aligned_cols=376 Identities=33% Similarity=0.559 Sum_probs=352.8
Q ss_pred CCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCE
Q 003887 221 PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPI 300 (789)
Q Consensus 221 P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~ 300 (789)
-+++.+|++++|++.+++.+...||++|+.+|+.||+.|+.|+|+|.++..|+|||.+|.+.+|..+--. .....
T Consensus 23 ~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~-----~r~tQ 97 (400)
T KOG0328|consen 23 VKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS-----VRETQ 97 (400)
T ss_pred cccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc-----cceee
Confidence 3567899999999999999999999999999999999999999999999999999999988887765222 22356
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcc
Q 003887 301 GVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDE 380 (789)
Q Consensus 301 vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDE 380 (789)
+|||.||||||.|+.+.+..+....++.+..+.||.+..+.++.+..|.++|.+||+++++++++..+....+++|||||
T Consensus 98 ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDE 177 (400)
T KOG0328|consen 98 ALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDE 177 (400)
T ss_pred EEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHH
Q 003887 381 ADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWL 460 (789)
Q Consensus 381 ah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L 460 (789)
||.|++.+|..++..++..+++..|++++|||+|.++.+....|+.+|+.+.+...+...+.|.|.+..+..+..|+..|
T Consensus 178 aDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtL 257 (400)
T KOG0328|consen 178 ADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTL 257 (400)
T ss_pred HHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998777788887
Q ss_pred HHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCcc
Q 003887 461 LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIK 540 (789)
Q Consensus 461 ~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~ 540 (789)
..+... +.-.+.+||||++..++.|.+.|++..+.|..+||+|++.+|+.++.+|++|+.+|||+||+-+||+|+|.|+
T Consensus 258 cdLYd~-LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVs 336 (400)
T KOG0328|consen 258 CDLYDT-LTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVS 336 (400)
T ss_pred HHHhhh-hehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeE
Confidence 776543 3456899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHHHHHHcCCCccHHHHH
Q 003887 541 SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMD 603 (789)
Q Consensus 541 ~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~L~~~~~~vp~~l~~ 603 (789)
+|||||+|.+.+.|+|||||.||.| ++|+++-|+..+|.+.++++.+.+.-...++|..+.+
T Consensus 337 lviNYDLP~nre~YIHRIGRSGRFG-RkGvainFVk~~d~~~lrdieq~yst~i~emp~nvad 398 (400)
T KOG0328|consen 337 LVINYDLPNNRELYIHRIGRSGRFG-RKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNVAD 398 (400)
T ss_pred EEEecCCCccHHHHhhhhccccccC-CcceEEEEecHHHHHHHHHHHHHHhhhcccccchhhh
Confidence 9999999999999999999999999 6899999999999999999999999888888877654
No 15
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.8e-61 Score=555.55 Aligned_cols=365 Identities=37% Similarity=0.607 Sum_probs=327.8
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccc--cCCCCEEE
Q 003887 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQ--KEEGPIGV 302 (789)
Q Consensus 225 ~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~--~~~gp~vL 302 (789)
.+|++++|++.+++.|.+.||..|||+|.++||.++.|+|+|+++|||||||++|++|++.+++..+... ....+++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 4699999999999999999999999999999999999999999999999999999999999987654322 12368999
Q ss_pred EEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhc-cccccceeEEEEccc
Q 003887 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK-ALTMSRVTYLVLDEA 381 (789)
Q Consensus 303 Il~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~-~~~l~~i~~lVlDEa 381 (789)
||+||++||.|+++.+.+|....++++..++|+.....+...+..+++|||+||++|++++... .+.+..+++||||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 9999999999999999999998899999999999988888888888999999999999998764 467889999999999
Q ss_pred chhccCCChHHHHHHHhhcCC--CceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHH
Q 003887 382 DRMFDLGFEPQIRSIVGQIRP--DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPW 459 (789)
Q Consensus 382 h~m~~~~f~~~i~~il~~~~~--~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~ 459 (789)
|+|++++|...+..++..++. .+|+++||||++..+..++..++.+|..+.+.........+.+.+... ....|...
T Consensus 169 h~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~-~~~~k~~~ 247 (572)
T PRK04537 169 DRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFP-ADEEKQTL 247 (572)
T ss_pred HHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEec-CHHHHHHH
Confidence 999999999999999998876 789999999999999999999999998777655555555666666554 44567777
Q ss_pred HHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCc
Q 003887 460 LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSI 539 (789)
Q Consensus 460 L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v 539 (789)
|+.++... ...++||||+++..++.|++.|...++.+..|||+|++.+|..+++.|++|+++|||||+++++||||++|
T Consensus 248 L~~ll~~~-~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V 326 (572)
T PRK04537 248 LLGLLSRS-EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGV 326 (572)
T ss_pred HHHHHhcc-cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCC
Confidence 77777542 45689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHHHHHH
Q 003887 540 KSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIA 592 (789)
Q Consensus 540 ~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~L~~ 592 (789)
++|||||+|.++..|+||+||+||.| +.|.|++|+++.+...+.++.+.+..
T Consensus 327 ~~VInyd~P~s~~~yvqRiGRaGR~G-~~G~ai~~~~~~~~~~l~~i~~~~~~ 378 (572)
T PRK04537 327 KYVYNYDLPFDAEDYVHRIGRTARLG-EEGDAISFACERYAMSLPDIEAYIEQ 378 (572)
T ss_pred CEEEEcCCCCCHHHHhhhhcccccCC-CCceEEEEecHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999 68999999999888888888766543
No 16
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.1e-59 Score=532.03 Aligned_cols=366 Identities=37% Similarity=0.583 Sum_probs=330.1
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccc--cCCCCEEE
Q 003887 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQ--KEEGPIGV 302 (789)
Q Consensus 225 ~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~--~~~gp~vL 302 (789)
.+|++++|++.+++.|...||..|||+|.++||.+++|+|+|++||||||||++|++|++.+++..+... ...++++|
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~l 87 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRAL 87 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 6899999999999999999999999999999999999999999999999999999999999997654321 23468999
Q ss_pred EEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccc
Q 003887 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD 382 (789)
Q Consensus 303 Il~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah 382 (789)
||+||++||.|+++.+..++...++++..++||.....+...+..+++|||+||++|.+++....+.+.++.+|||||||
T Consensus 88 il~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad 167 (423)
T PRK04837 88 IMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 167 (423)
T ss_pred EECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHH
Confidence 99999999999999999999988999999999998888888888889999999999999998888899999999999999
Q ss_pred hhccCCChHHHHHHHhhcCC--CceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHH
Q 003887 383 RMFDLGFEPQIRSIVGQIRP--DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWL 460 (789)
Q Consensus 383 ~m~~~~f~~~i~~il~~~~~--~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L 460 (789)
+|++++|...+..++..++. .+++++||||++..+..++..++.+|..+.+.........+.+.+... ....|...|
T Consensus 168 ~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~-~~~~k~~~l 246 (423)
T PRK04837 168 RMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYP-SNEEKMRLL 246 (423)
T ss_pred HHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeC-CHHHHHHHH
Confidence 99999999999999998874 578899999999999999999999998888766655556666655544 445677777
Q ss_pred HHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCcc
Q 003887 461 LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIK 540 (789)
Q Consensus 461 ~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~ 540 (789)
..++... ...++||||+++..|+.++..|...++.+..+||+|++.+|..+++.|++|+++|||||++++||||||+|+
T Consensus 247 ~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~ 325 (423)
T PRK04837 247 QTLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVT 325 (423)
T ss_pred HHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccC
Confidence 7776543 356899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHHHHHHc
Q 003887 541 SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAA 593 (789)
Q Consensus 541 ~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~L~~~ 593 (789)
+|||||+|.++..|+||+||+||.| +.|.|++|+++.+...+..+.+.+...
T Consensus 326 ~VI~~d~P~s~~~yiqR~GR~gR~G-~~G~ai~~~~~~~~~~~~~i~~~~~~~ 377 (423)
T PRK04837 326 HVFNYDLPDDCEDYVHRIGRTGRAG-ASGHSISLACEEYALNLPAIETYIGHS 377 (423)
T ss_pred EEEEeCCCCchhheEeccccccCCC-CCeeEEEEeCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999 789999999999988888876666443
No 17
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=3.4e-60 Score=504.48 Aligned_cols=361 Identities=38% Similarity=0.557 Sum_probs=331.5
Q ss_pred CCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEE
Q 003887 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (789)
Q Consensus 224 i~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLI 303 (789)
...|++..|++..+++|+.+||..+|++|...|+.++.|+|+++.|.||+|||++|++|++.++++.+...+ ++-.+||
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r-~~~~vlI 159 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPR-NGTGVLI 159 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCC-CCeeEEE
Confidence 356778899999999999999999999999999999999999999999999999999999999988765443 6788999
Q ss_pred EcCcHHHHHHHHHHHHHHhhhc-CcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhcc-ccccceeEEEEccc
Q 003887 304 CAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKA-LTMSRVTYLVLDEA 381 (789)
Q Consensus 304 l~PTreLa~Qi~~~~~k~~~~~-~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~-~~l~~i~~lVlDEa 381 (789)
|||||+||.|++.+++++.... ++.+.+++||.......+++..+++|+|+|||||++++++.. +....++++|+|||
T Consensus 160 i~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEA 239 (543)
T KOG0342|consen 160 ICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEA 239 (543)
T ss_pred ecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecc
Confidence 9999999999999999999988 899999999999998888998999999999999999998754 34556689999999
Q ss_pred chhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCC-CeEEeecc--ccCccccceEEEEecCCCcchHH
Q 003887 382 DRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSD-PVRVTVGE--VGMANEDITQVVHVIPSDAEKLP 458 (789)
Q Consensus 382 h~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~-p~~i~i~~--~~~~~~~i~q~~~~~~~~~~k~~ 458 (789)
|+++++||...+..|+..++..+|+++||||.+..++++++-.+.. |..+.+.. ...+.+.+.|.+.+++.. .++.
T Consensus 240 DrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~-~~f~ 318 (543)
T KOG0342|consen 240 DRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSD-SRFS 318 (543)
T ss_pred hhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEecccc-chHH
Confidence 9999999999999999999999999999999999999999988775 77776544 345667888988888654 4588
Q ss_pred HHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCC
Q 003887 459 WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKS 538 (789)
Q Consensus 459 ~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~ 538 (789)
.|+.+|++.....++||||+|......++..|+...++|..|||.++|..|..+..+|++.+.-|||||||++||+|+|+
T Consensus 319 ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~ 398 (543)
T KOG0342|consen 319 LLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPD 398 (543)
T ss_pred HHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCC
Confidence 88999988777789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHH
Q 003887 539 IKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELV 587 (789)
Q Consensus 539 v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~ 587 (789)
|++||.||+|.++.+|+||+|||||.| +.|.++.|+.+.+..++..|.
T Consensus 399 V~~VvQ~~~P~d~~~YIHRvGRTaR~g-k~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 399 VDWVVQYDPPSDPEQYIHRVGRTAREG-KEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred ceEEEEeCCCCCHHHHHHHhccccccC-CCceEEEEeChhHHHHHHHHh
Confidence 999999999999999999999999998 889999999999999887775
No 18
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-60 Score=487.47 Aligned_cols=392 Identities=33% Similarity=0.500 Sum_probs=337.2
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEE
Q 003887 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (789)
Q Consensus 223 pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vL 302 (789)
....|..+||++++.+.|+..++.+|||+|..|||.|+.|+|||.+|.||||||++|.+|+|+.+.+.| .+-.+|
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP-----~giFal 79 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP-----YGIFAL 79 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC-----CcceEE
Confidence 356899999999999999999999999999999999999999999999999999999999999997764 588899
Q ss_pred EEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhc----cccccceeEEEE
Q 003887 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK----ALTMSRVTYLVL 378 (789)
Q Consensus 303 Il~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~----~~~l~~i~~lVl 378 (789)
|+.|||+||.|+.+.+..+.+..++++.+++||...-.+...|...+||||+||++|.+++... ...+.++.++|+
T Consensus 80 vlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVl 159 (442)
T KOG0340|consen 80 VLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVL 159 (442)
T ss_pred EecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999765 345889999999
Q ss_pred cccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCC--eEEeeccccCccccceEEEEecCCCcch
Q 003887 379 DEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDP--VRVTVGEVGMANEDITQVVHVIPSDAEK 456 (789)
Q Consensus 379 DEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p--~~i~i~~~~~~~~~i~q~~~~~~~~~~k 456 (789)
||||+|++..|...+..+...++..||+++||||+...+..+..--...+ ..+.........+.+.|.+..++ ...|
T Consensus 160 DEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~-~~vk 238 (442)
T KOG0340|consen 160 DEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVS-IDVK 238 (442)
T ss_pred cchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecc-hhhh
Confidence 99999999999999999999999999999999999888766544333332 22222223344555667776664 4568
Q ss_pred HHHHHHhcCCCCC--CCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccC
Q 003887 457 LPWLLEKLPGMID--DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGL 534 (789)
Q Consensus 457 ~~~L~~~L~~~~~--~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~Gl 534 (789)
..+|+..|..... .+.++||+++..+|+.|+..|+...+.+..+|+.|+|.+|..++.+|+++..+||||||+++|||
T Consensus 239 daYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGL 318 (442)
T KOG0340|consen 239 DAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGL 318 (442)
T ss_pred HHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCC
Confidence 8888888887655 66899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHHHHHHcCCC----------------cc
Q 003887 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQN----------------VS 598 (789)
Q Consensus 535 DI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~L~~~~~~----------------vp 598 (789)
|||.|.+|||||.|.+|.+|+||+||+.|+| +.|.+++|+++.|.+.+..+.+.+-..-.+ +.
T Consensus 319 DIP~V~LVvN~diPr~P~~yiHRvGRtARAG-R~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~~~~~~~~~~t~V~~a 397 (442)
T KOG0340|consen 319 DIPTVELVVNHDIPRDPKDYIHRVGRTARAG-RKGMAISIVTQRDVELLQAIEEEIGKKLTEYNKVQRTVELYVTQVTVA 397 (442)
T ss_pred CCCceeEEEecCCCCCHHHHHHhhcchhccc-CCcceEEEechhhHHHHHHHHHHHhcccccccccchhhheehhhHHHH
Confidence 9999999999999999999999999999999 689999999999998887776554322211 12
Q ss_pred HHHHHHHHhcCcccccccccCCC
Q 003887 599 MELMDLAMKDGRFRSKRDARKGG 621 (789)
Q Consensus 599 ~~l~~~a~~~~~~~~~~~~r~~g 621 (789)
.....+.+.+..|..+...|+..
T Consensus 398 krea~m~m~~~~F~er~q~R~~k 420 (442)
T KOG0340|consen 398 KREAEMKMDNNGFGERAQKRRKK 420 (442)
T ss_pred HHHHHHHhhhcchhHHHHHHHHH
Confidence 23344566677777665544433
No 19
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=6.1e-58 Score=523.25 Aligned_cols=358 Identities=40% Similarity=0.621 Sum_probs=326.4
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEE
Q 003887 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (789)
Q Consensus 225 ~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl 304 (789)
.+|++++|++.+++.|.+.||..|||+|.++||.+++++|+|++||||+|||++|++|++.++... ...+++|||
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~-----~~~~~~lil 78 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK-----RFRVQALVL 78 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc-----cCCceEEEE
Confidence 579999999999999999999999999999999999999999999999999999999999987432 235679999
Q ss_pred cCcHHHHHHHHHHHHHHhhhc-CcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccch
Q 003887 305 APTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (789)
Q Consensus 305 ~PTreLa~Qi~~~~~k~~~~~-~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~ 383 (789)
+||++||.|+.++++.++... ++++..++||.+...+...+..+++|+|+||++|.+++.+..+.+.++++|||||||+
T Consensus 79 ~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~ 158 (460)
T PRK11776 79 CPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADR 158 (460)
T ss_pred eCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHH
Confidence 999999999999999987654 7899999999999999999999999999999999999998888899999999999999
Q ss_pred hccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHHHHh
Q 003887 384 MFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463 (789)
Q Consensus 384 m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~ 463 (789)
|++++|...+..++..+++.+|+++||||+|+.+..++..++.+|..+.+.... ....+.+.+..+.. ..|...|..+
T Consensus 159 ~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~-~~k~~~l~~l 236 (460)
T PRK11776 159 MLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSP-DERLPALQRL 236 (460)
T ss_pred HhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCc-HHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988875543 34457777776654 3477777777
Q ss_pred cCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEE
Q 003887 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVV 543 (789)
Q Consensus 464 L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI 543 (789)
+... ...++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|.++|||||+++++|||||++++||
T Consensus 237 l~~~-~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI 315 (460)
T PRK11776 237 LLHH-QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVI 315 (460)
T ss_pred HHhc-CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEE
Confidence 7543 456899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHHHHH
Q 003887 544 NFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLI 591 (789)
Q Consensus 544 ~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~L~ 591 (789)
+||+|.++..|+||+||+||.| +.|.|++|+++.+...+..+.+.+.
T Consensus 316 ~~d~p~~~~~yiqR~GRtGR~g-~~G~ai~l~~~~e~~~~~~i~~~~~ 362 (460)
T PRK11776 316 NYELARDPEVHVHRIGRTGRAG-SKGLALSLVAPEEMQRANAIEDYLG 362 (460)
T ss_pred EecCCCCHhHhhhhcccccCCC-CcceEEEEEchhHHHHHHHHHHHhC
Confidence 9999999999999999999999 6799999999998887777766553
No 20
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=5.9e-58 Score=534.35 Aligned_cols=358 Identities=41% Similarity=0.656 Sum_probs=326.3
Q ss_pred CCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEE
Q 003887 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (789)
Q Consensus 224 i~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLI 303 (789)
..+|.+++|++.++++|.+.||.+|||+|.++||.++.++|+|++|+||+|||++|++|++..+... ...+++||
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~-----~~~~~~LI 79 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE-----LKAPQILV 79 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc-----cCCCeEEE
Confidence 3569999999999999999999999999999999999999999999999999999999999887432 24678999
Q ss_pred EcCcHHHHHHHHHHHHHHhhhc-CcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccc
Q 003887 304 CAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD 382 (789)
Q Consensus 304 l~PTreLa~Qi~~~~~k~~~~~-~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah 382 (789)
||||++||.|+++++.++.... ++.++.++||.....+...+..+++|||+||++|++++.+..+.++.+.+|||||||
T Consensus 80 L~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd 159 (629)
T PRK11634 80 LAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD 159 (629)
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHH
Confidence 9999999999999999998764 789999999999888888888899999999999999999888899999999999999
Q ss_pred hhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHHHH
Q 003887 383 RMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462 (789)
Q Consensus 383 ~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~ 462 (789)
+|++++|...+..++..++..+|+++||||+|..+..++..|+.+|..+.+.........+.+.+..+. ...|...|..
T Consensus 160 ~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~-~~~k~~~L~~ 238 (629)
T PRK11634 160 EMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVW-GMRKNEALVR 238 (629)
T ss_pred HHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEec-hhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999998888766666677777776664 3467777777
Q ss_pred hcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEE
Q 003887 463 KLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSV 542 (789)
Q Consensus 463 ~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~V 542 (789)
+|... ...++||||+++..++.|+..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++|
T Consensus 239 ~L~~~-~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~V 317 (629)
T PRK11634 239 FLEAE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLV 317 (629)
T ss_pred HHHhc-CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEE
Confidence 77543 34689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHHH
Q 003887 543 VNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNS 589 (789)
Q Consensus 543 I~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~ 589 (789)
||||+|.++..|+||+|||||.| +.|.|++|+.+.+..++..+.+.
T Consensus 318 I~~d~P~~~e~yvqRiGRtGRaG-r~G~ai~~v~~~e~~~l~~ie~~ 363 (629)
T PRK11634 318 VNYDIPMDSESYVHRIGRTGRAG-RAGRALLFVENRERRLLRNIERT 363 (629)
T ss_pred EEeCCCCCHHHHHHHhccccCCC-CcceEEEEechHHHHHHHHHHHH
Confidence 99999999999999999999999 68999999998877666665443
No 21
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.5e-58 Score=482.95 Aligned_cols=357 Identities=36% Similarity=0.548 Sum_probs=316.9
Q ss_pred CCcccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEE
Q 003887 225 KTFEDCG--FSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (789)
Q Consensus 225 ~sf~~~~--l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vL 302 (789)
..|+++. |++++++++...||...||+|..+||.++.++|+++.++||||||+||++|++..++++........-.+|
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 3566665 55999999999999999999999999999999999999999999999999999999765433222234689
Q ss_pred EEcCcHHHHHHHHHHHHHHhhh-cCcEEEEEEcCCChHHHHHHHhc-CCcEEEeCHHHHHHHHhhcccc--ccceeEEEE
Q 003887 303 ICAPTRELAHQIYLETKKFAKS-HGIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMKALT--MSRVTYLVL 378 (789)
Q Consensus 303 Il~PTreLa~Qi~~~~~k~~~~-~~i~v~~~~gg~~~~~~~~~l~~-~~dIiV~Tp~~L~~~l~~~~~~--l~~i~~lVl 378 (789)
||+||||||.||.+.+..|... .++++.+++||.+..+.+..+.. ++.|+|+|||+|.+++.+.... +..+++||+
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence 9999999999999999999876 68899999999998888877764 6889999999999999885444 459999999
Q ss_pred cccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccC--ccccceEEEEecCCCcch
Q 003887 379 DEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGM--ANEDITQVVHVIPSDAEK 456 (789)
Q Consensus 379 DEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~--~~~~i~q~~~~~~~~~~k 456 (789)
||||++++++|..++..|+..+|.+|+|=+||||....+.+|++..+.||+.+.+..... +...+...+..+ ....|
T Consensus 164 DEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~-~a~eK 242 (567)
T KOG0345|consen 164 DEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVC-EADEK 242 (567)
T ss_pred cchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEe-cHHHH
Confidence 999999999999999999999999999999999999999999999999999999987765 444455555555 56789
Q ss_pred HHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHc--CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccC
Q 003887 457 LPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGL 534 (789)
Q Consensus 457 ~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~--g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~Gl 534 (789)
...|+.+|... ...++|||.+|...++.....|... ...+..+||.|.+..|..++..|.+-.-.+|+|||+++|||
T Consensus 243 ~~~lv~~L~~~-~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGl 321 (567)
T KOG0345|consen 243 LSQLVHLLNNN-KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGL 321 (567)
T ss_pred HHHHHHHHhcc-ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccC
Confidence 99999999873 5679999999999999998888765 67899999999999999999999998888999999999999
Q ss_pred CCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHH
Q 003887 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAG 584 (789)
Q Consensus 535 DI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~ 584 (789)
|||+|++||+||+|.++..|+||+|||+|+| +.|.+++|+.+.+..+..
T Consensus 322 Dip~iD~VvQ~DpP~~~~~FvHR~GRTaR~g-r~G~Aivfl~p~E~aYve 370 (567)
T KOG0345|consen 322 DIPGIDLVVQFDPPKDPSSFVHRCGRTARAG-REGNAIVFLNPREEAYVE 370 (567)
T ss_pred CCCCceEEEecCCCCChhHHHhhcchhhhcc-CccceEEEecccHHHHHH
Confidence 9999999999999999999999999999999 689999999997665543
No 22
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=7.8e-57 Score=510.79 Aligned_cols=363 Identities=37% Similarity=0.607 Sum_probs=331.0
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEc
Q 003887 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305 (789)
Q Consensus 226 sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~ 305 (789)
+|++++|++.+++.|.+.||.+|+++|.++|+.++.++|+|+++|||+|||++|++|++.+++..+.. ....+++|||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~-~~~~~~~lil~ 80 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR-KSGPPRILILT 80 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc-CCCCceEEEEC
Confidence 69999999999999999999999999999999999999999999999999999999999999764321 23357899999
Q ss_pred CcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhc
Q 003887 306 PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (789)
Q Consensus 306 PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~ 385 (789)
||++||.|+++.+..++...++++..++||.....+...+..+++|||+||++|++++....+.+.++.+|||||||+|+
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l 160 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRML 160 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHh
Confidence 99999999999999999988999999999999888887788889999999999999999888889999999999999999
Q ss_pred cCCChHHHHHHHhhcCCCceEEEEeccCcH-HHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHHHHhc
Q 003887 386 DLGFEPQIRSIVGQIRPDRQTLLFSATMPR-KVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKL 464 (789)
Q Consensus 386 ~~~f~~~i~~il~~~~~~~q~ll~SATl~~-~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L 464 (789)
+++|...+..+...++..+|+++||||++. .+..++..++.+|..+.+.........+.+.+..+.....|...|..++
T Consensus 161 ~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~ 240 (434)
T PRK11192 161 DMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLL 240 (434)
T ss_pred CCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHH
Confidence 999999999999999989999999999985 5888899999999988877666666777787777766566777777777
Q ss_pred CCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEE
Q 003887 465 PGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN 544 (789)
Q Consensus 465 ~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~ 544 (789)
.. ....++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||||++++|||
T Consensus 241 ~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~ 319 (434)
T PRK11192 241 KQ-PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVIN 319 (434)
T ss_pred hc-CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEE
Confidence 54 24579999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHHHHH
Q 003887 545 FDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLI 591 (789)
Q Consensus 545 ~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~L~ 591 (789)
||+|.+...|+||+||+||.| ..|.+++|++..|...+..+.+.+.
T Consensus 320 ~d~p~s~~~yiqr~GR~gR~g-~~g~ai~l~~~~d~~~~~~i~~~~~ 365 (434)
T PRK11192 320 FDMPRSADTYLHRIGRTGRAG-RKGTAISLVEAHDHLLLGKIERYIE 365 (434)
T ss_pred ECCCCCHHHHhhcccccccCC-CCceEEEEecHHHHHHHHHHHHHHh
Confidence 999999999999999999999 6799999999999988888876664
No 23
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.7e-59 Score=470.63 Aligned_cols=366 Identities=30% Similarity=0.523 Sum_probs=339.3
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEE
Q 003887 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (789)
Q Consensus 225 ~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl 304 (789)
..|+++.|...|+-.+-..||.+|+|+|.++||.++.|+|++..|..|+|||.+|++|+|..+--. .+.-.++|+
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~-----~~~IQ~~il 159 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK-----KNVIQAIIL 159 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc-----ccceeEEEE
Confidence 569999999999999999999999999999999999999999999999999999999999987432 345568999
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchh
Q 003887 305 APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM 384 (789)
Q Consensus 305 ~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m 384 (789)
+|||+||.|+...++.+.+..++.+.+.+||.+..+.+-.+....+++|+||+++++++++....++.+.++|+||||.+
T Consensus 160 VPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKl 239 (459)
T KOG0326|consen 160 VPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKL 239 (459)
T ss_pred eecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhh
Confidence 99999999999999999999999999999999999988888899999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHHHHhc
Q 003887 385 FDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKL 464 (789)
Q Consensus 385 ~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L 464 (789)
++..|.+.+..++..+|+.+|++++|||+|-.+..++..++.+|..|..- ...+...++|.+.++. +..|...|-.++
T Consensus 240 Ls~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM-~eLtl~GvtQyYafV~-e~qKvhCLntLf 317 (459)
T KOG0326|consen 240 LSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLM-EELTLKGVTQYYAFVE-ERQKVHCLNTLF 317 (459)
T ss_pred hchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehh-hhhhhcchhhheeeec-hhhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999988764 3466778899888884 456776666655
Q ss_pred CCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEE
Q 003887 465 PGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN 544 (789)
Q Consensus 465 ~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~ 544 (789)
.++ .-.+.|||||+...++.|++.+.+.|+.|..+|..|-|++|.+++..|++|.++.|||||.+.||+||+.+++|||
T Consensus 318 skL-qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVIN 396 (459)
T KOG0326|consen 318 SKL-QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVIN 396 (459)
T ss_pred HHh-cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEe
Confidence 543 5578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHHHHHHcCCCccH
Q 003887 545 FDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSM 599 (789)
Q Consensus 545 ~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~L~~~~~~vp~ 599 (789)
||+|.+.+.|+|||||.||.| +.|.|+.|++.+|...+.++.+.|-....++|.
T Consensus 397 FDfpk~aEtYLHRIGRsGRFG-hlGlAInLityedrf~L~~IE~eLGtEI~pip~ 450 (459)
T KOG0326|consen 397 FDFPKNAETYLHRIGRSGRFG-HLGLAINLITYEDRFNLYRIEQELGTEIKPIPS 450 (459)
T ss_pred cCCCCCHHHHHHHccCCccCC-CcceEEEEEehhhhhhHHHHHHHhccccccCCC
Confidence 999999999999999999999 789999999999999999998888777777764
No 24
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-57 Score=484.39 Aligned_cols=375 Identities=33% Similarity=0.534 Sum_probs=331.3
Q ss_pred HHHHHHHHHHc-CcccccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHH
Q 003887 201 EQDVMEYKKSL-AIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAF 279 (789)
Q Consensus 201 ~~~~~~~r~~~-~i~v~~~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~ 279 (789)
++++.+++.++ .+. ...+..|++++|+...++.|+..+|..||.+|+++||..|+|+|+|..|.||||||++|
T Consensus 50 ee~i~~l~~ky~ei~------~~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAF 123 (758)
T KOG0343|consen 50 EEEIEELKQKYAEID------STTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAF 123 (758)
T ss_pred HHHHHHHHHHHHHhh------hhhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeee
Confidence 44555555554 222 23457799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHH
Q 003887 280 VLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL 359 (789)
Q Consensus 280 llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L 359 (789)
++|+|.+++.. ......|--+|||.|||+||.|+++.+.+..+.+++.+.+++||.........+ ...+|+|||||||
T Consensus 124 lvPvlE~L~r~-kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRL 201 (758)
T KOG0343|consen 124 LVPVLEALYRL-KWSPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGRL 201 (758)
T ss_pred hHHHHHHHHHc-CCCCCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechHHH
Confidence 99999998754 234467888999999999999999999999999999999999998865544443 4599999999999
Q ss_pred HHHHhh-ccccccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccc--
Q 003887 360 IDMLKM-KALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEV-- 436 (789)
Q Consensus 360 ~~~l~~-~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~-- 436 (789)
+.++.. -.++..++.+|||||||+|++|||..++..|+..+++.+|+++||||....+.+|++..+.+|..|.+...
T Consensus 202 LQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~ 281 (758)
T KOG0343|consen 202 LQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAV 281 (758)
T ss_pred HHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEecccc
Confidence 999865 45678899999999999999999999999999999999999999999999999999999999999888743
Q ss_pred cCccccceEEEEecCCCcchHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHc--CCceeeccCCCCHHHHHHHHH
Q 003887 437 GMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK--GFKAAALHGDKDQASRMEILQ 514 (789)
Q Consensus 437 ~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~--g~~v~~lhg~~~~~eR~~~l~ 514 (789)
...+..+.|.+.+++ -..|+..|...|...+ ..++|||+.+..++..++..+.+. |+++..|||.|+|..|..+..
T Consensus 282 ~atP~~L~Q~y~~v~-l~~Ki~~L~sFI~shl-k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~ 359 (758)
T KOG0343|consen 282 AATPSNLQQSYVIVP-LEDKIDMLWSFIKSHL-KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYK 359 (758)
T ss_pred ccChhhhhheEEEEe-hhhHHHHHHHHHHhcc-ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHH
Confidence 456677888888875 4679999999988653 458999999999999999999875 889999999999999999999
Q ss_pred HhhcCCccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEcccc-HHHHHHH
Q 003887 515 KFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE-ARFAGEL 586 (789)
Q Consensus 515 ~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d-~~~~~~l 586 (789)
.|...+..||+|||+++||||+|.|++||.||+|.++++|+||+||+.|.. ..|.+++++++.+ ..++..|
T Consensus 360 ~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~-~~G~sll~L~psEeE~~l~~L 431 (758)
T KOG0343|consen 360 KFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYK-ERGESLLMLTPSEEEAMLKKL 431 (758)
T ss_pred HHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhccc-CCCceEEEEcchhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998 6799999999988 4444333
No 25
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.6e-57 Score=480.92 Aligned_cols=363 Identities=36% Similarity=0.560 Sum_probs=312.7
Q ss_pred CCCcccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcC-cccccCCCCEE
Q 003887 224 VKTFEDCGFSTQLMHAISK-QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQ-PELQKEEGPIG 301 (789)
Q Consensus 224 i~sf~~~~l~~~l~~~l~~-~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~-~~~~~~~gp~v 301 (789)
-..|..+||++.+...|.. +++..||.+|.++||.+++|+|+++.++||||||++|++|++++|... +.+.+.+|+.+
T Consensus 135 s~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~A 214 (708)
T KOG0348|consen 135 SAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYA 214 (708)
T ss_pred cccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceE
Confidence 3569999999999999875 699999999999999999999999999999999999999999999875 45667789999
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhhc-CcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhh-ccccccceeEEEEc
Q 003887 302 VICAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM-KALTMSRVTYLVLD 379 (789)
Q Consensus 302 LIl~PTreLa~Qi~~~~~k~~~~~-~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~-~~~~l~~i~~lVlD 379 (789)
||||||||||.|+++.++++.+.+ .|-.+++.||..+......|+.|++|+|+|||||+++|++ ..+.++++.|||||
T Consensus 215 LVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlD 294 (708)
T KOG0348|consen 215 LVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLD 294 (708)
T ss_pred EEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEec
Confidence 999999999999999999998865 3555778899988888889999999999999999999987 46778999999999
Q ss_pred ccchhccCCChHHHHHHHhhcC-------------CCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccc----------
Q 003887 380 EADRMFDLGFEPQIRSIVGQIR-------------PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEV---------- 436 (789)
Q Consensus 380 Eah~m~~~~f~~~i~~il~~~~-------------~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~---------- 436 (789)
|||+|+++||+..|..|++.+. +.+|.+++|||+...+..|+..-+.+|+.|.....
T Consensus 295 EaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a 374 (708)
T KOG0348|consen 295 EADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKA 374 (708)
T ss_pred chhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhh
Confidence 9999999999999999988762 24789999999999999999999999988872111
Q ss_pred ---------------cCccccceEEEEecCCCcchHHHHHHhcCCC---CCCCcEEEEecccccHHHHHHHHHHc-----
Q 003887 437 ---------------GMANEDITQVVHVIPSDAEKLPWLLEKLPGM---IDDGDVLVFASKKTTVDEIESQLAQK----- 493 (789)
Q Consensus 437 ---------------~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~---~~~~kvLVF~~s~~~a~~l~~~L~~~----- 493 (789)
....+.+.|.+.+++.. -++..|..+|... ....++|||+.+.+.++.=+..|...
T Consensus 375 ~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpK-LRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~ 453 (708)
T KOG0348|consen 375 VQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPK-LRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHL 453 (708)
T ss_pred hhhcCCcccccccccccCcHHhhhceEecCCc-hhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhccc
Confidence 11234456677777543 3455555555432 23458999999999998887777642
Q ss_pred -----------------CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHH
Q 003887 494 -----------------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVH 556 (789)
Q Consensus 494 -----------------g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~Q 556 (789)
+.++..|||+|+|.+|..+++.|...+..||+|||+++||||+|.|.+||.||+|.++.+|+|
T Consensus 454 e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylH 533 (708)
T KOG0348|consen 454 EGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLH 533 (708)
T ss_pred ccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHH
Confidence 456899999999999999999999998899999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCCeEEEEEEccccHHHHHHHHH
Q 003887 557 RIGRTGRAGDKDGTAYTLVTQKEARFAGELVN 588 (789)
Q Consensus 557 riGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~ 588 (789)
|+|||.|+| ..|.++.|+.+.+.+++..|..
T Consensus 534 RvGRTARaG-~kG~alLfL~P~Eaey~~~l~~ 564 (708)
T KOG0348|consen 534 RVGRTARAG-EKGEALLFLLPSEAEYVNYLKK 564 (708)
T ss_pred Hhhhhhhcc-CCCceEEEecccHHHHHHHHHh
Confidence 999999999 6799999999999986655543
No 26
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-56 Score=469.08 Aligned_cols=367 Identities=33% Similarity=0.532 Sum_probs=329.3
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccc-ccCCCCEEEE
Q 003887 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPEL-QKEEGPIGVI 303 (789)
Q Consensus 225 ~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~-~~~~gp~vLI 303 (789)
.+|++++|+++|++++.+.||.+||-||..+||.++.|+|++..|.||||||++|++|+++.++..... ....+|.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 689999999999999999999999999999999999999999999999999999999999999976554 3456899999
Q ss_pred EcCcHHHHHHHHHHHHHHhhhc--CcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhcc-ccccceeEEEEcc
Q 003887 304 CAPTRELAHQIYLETKKFAKSH--GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKA-LTMSRVTYLVLDE 380 (789)
Q Consensus 304 l~PTreLa~Qi~~~~~k~~~~~--~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~-~~l~~i~~lVlDE 380 (789)
||||+|||+|++..+.++.... .++++-+....+.......|...++|||+||++|+.++..+. ..+..++++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 9999999999999999986643 477777777777776667788889999999999999998876 6788999999999
Q ss_pred cchhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHH
Q 003887 381 ADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWL 460 (789)
Q Consensus 381 ah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L 460 (789)
||.++..||+..+..+..++|+..|.++||||+..++..|-..+|.+|+.+...+....+.+-.+.+.+..++.+|+..+
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflll 258 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLL 258 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999888777666555444444444688999999
Q ss_pred HHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeeh------------
Q 003887 461 LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD------------ 528 (789)
Q Consensus 461 ~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~------------ 528 (789)
+.+|+-.+-.|++|||+|+...|.+|.-.|.+.|++.++|+|.|+...|..++++|+.|-++||||||
T Consensus 259 yallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~ 338 (569)
T KOG0346|consen 259 YALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEV 338 (569)
T ss_pred HHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccc
Confidence 88887766789999999999999999999999999999999999999999999999999999999999
Q ss_pred -----------------------hhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHH
Q 003887 529 -----------------------VAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGE 585 (789)
Q Consensus 529 -----------------------v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~ 585 (789)
-++||||+.+|.+|||||+|.++..|+||+|||+|.+ ++|.+++|+.+.+..-...
T Consensus 339 kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~-n~GtalSfv~P~e~~g~~~ 417 (569)
T KOG0346|consen 339 KGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGN-NKGTALSFVSPKEEFGKES 417 (569)
T ss_pred cccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCC-CCCceEEEecchHHhhhhH
Confidence 1358999999999999999999999999999999998 7899999999987765445
Q ss_pred HHHHHHH
Q 003887 586 LVNSLIA 592 (789)
Q Consensus 586 l~~~L~~ 592 (789)
|...+..
T Consensus 418 le~~~~d 424 (569)
T KOG0346|consen 418 LESILKD 424 (569)
T ss_pred HHHHHhh
Confidence 5444433
No 27
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=9.4e-55 Score=498.47 Aligned_cols=379 Identities=39% Similarity=0.589 Sum_probs=332.5
Q ss_pred CCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccc--cCCCC
Q 003887 222 RPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQ--KEEGP 299 (789)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~--~~~gp 299 (789)
.....|.+++|++.+++.|.+.||..|+++|.++|+.+++|+|+|++++||||||++|++|++..++..+... ....+
T Consensus 84 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~ 163 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEP 163 (475)
T ss_pred cCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 3456799999999999999999999999999999999999999999999999999999999999987654221 12258
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhc-CCcEEEeCHHHHHHHHhhccccccceeEEEE
Q 003887 300 IGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVL 378 (789)
Q Consensus 300 ~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVl 378 (789)
++|||+||++||.|+++.++.+....++++..++||.....+...+.. .++|||+||++|++++......+.++++|||
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lVi 243 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVL 243 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEe
Confidence 899999999999999999999998889999999999888777777654 5899999999999999888888999999999
Q ss_pred cccchhccCCChHHHHHHHhhcCC--CceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcch
Q 003887 379 DEADRMFDLGFEPQIRSIVGQIRP--DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEK 456 (789)
Q Consensus 379 DEah~m~~~~f~~~i~~il~~~~~--~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k 456 (789)
||||++++++|...+..++..++. .+|++++|||++..+..++..++.+|..+.+.........+.+.+..+. ...+
T Consensus 244 DEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~k 322 (475)
T PRK01297 244 DEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVA-GSDK 322 (475)
T ss_pred chHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEec-chhH
Confidence 999999999999999999988854 6799999999999999999999999988877666655666777666654 3456
Q ss_pred HHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCC
Q 003887 457 LPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDI 536 (789)
Q Consensus 457 ~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI 536 (789)
...|..++... ...++||||+++..++.++..|...++.+..+||++++.+|.++++.|++|+++|||||+++++||||
T Consensus 323 ~~~l~~ll~~~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi 401 (475)
T PRK01297 323 YKLLYNLVTQN-PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHI 401 (475)
T ss_pred HHHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcc
Confidence 66666666542 34689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHHHHHHcC-CCc-cHHHHH
Q 003887 537 KSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAG-QNV-SMELMD 603 (789)
Q Consensus 537 ~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~L~~~~-~~v-p~~l~~ 603 (789)
+++++||+|++|.++..|+||+||+||.| +.|.+++|++.+|..++..+.+.+.... ..+ |.+|+.
T Consensus 402 ~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g-~~g~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T PRK01297 402 DGISHVINFTLPEDPDDYVHRIGRTGRAG-ASGVSISFAGEDDAFQLPEIEELLGRKISCEMPPAELLK 469 (475)
T ss_pred cCCCEEEEeCCCCCHHHHHHhhCccCCCC-CCceEEEEecHHHHHHHHHHHHHhCCCCcccCCcHHHhh
Confidence 99999999999999999999999999999 6799999999999888888877775543 343 334443
No 28
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-56 Score=478.21 Aligned_cols=372 Identities=33% Similarity=0.515 Sum_probs=314.6
Q ss_pred CCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC-CCEEEEccCCChhhHHHHHHHHHHHhcCcccc----
Q 003887 220 VPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQ---- 294 (789)
Q Consensus 220 ~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~g-rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~---- 294 (789)
.+..+..|.+++||..++.+|..+||..||+||...||.++.| .|+|+.|+||||||+||-|||+..+.......
T Consensus 176 ~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~ 255 (731)
T KOG0347|consen 176 SKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELS 255 (731)
T ss_pred cccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhh
Confidence 3556788999999999999999999999999999999999999 79999999999999999999999655432211
Q ss_pred ----cCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccc--
Q 003887 295 ----KEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL-- 368 (789)
Q Consensus 295 ----~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~-- 368 (789)
+...|.+||++||||||.|+.+.+...+...++++..++||.....|.+-|...++|||||||||+.++.....
T Consensus 256 ~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l 335 (731)
T KOG0347|consen 256 NTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHL 335 (731)
T ss_pred hHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhh
Confidence 12245699999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred -cccceeEEEEcccchhccCCChHHHHHHHhhcC-----CCceEEEEeccCcH---------------------HHHHHH
Q 003887 369 -TMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR-----PDRQTLLFSATMPR---------------------KVEKLA 421 (789)
Q Consensus 369 -~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~-----~~~q~ll~SATl~~---------------------~v~~l~ 421 (789)
++..+.+|||||||||+..|+...+..|+..+. ..+|+++||||+.- .++.|+
T Consensus 336 ~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lm 415 (731)
T KOG0347|consen 336 GNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLM 415 (731)
T ss_pred hhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHH
Confidence 567789999999999999999999999888775 56899999999842 133333
Q ss_pred HH--HhCCCeEEeeccccCccccceEEEEecCCCcchHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceee
Q 003887 422 RE--ILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAA 499 (789)
Q Consensus 422 ~~--~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~ 499 (789)
.. +...|..|...........+......|+ ...|-..|+-+|-. ..|++|||||+...+.+|.-+|+..++....
T Consensus 416 k~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~-~~eKD~ylyYfl~r--yPGrTlVF~NsId~vKRLt~~L~~L~i~p~~ 492 (731)
T KOG0347|consen 416 KKIGFRGKPKIIDLTPQSATASTLTESLIECP-PLEKDLYLYYFLTR--YPGRTLVFCNSIDCVKRLTVLLNNLDIPPLP 492 (731)
T ss_pred HHhCccCCCeeEecCcchhHHHHHHHHhhcCC-ccccceeEEEEEee--cCCceEEEechHHHHHHHHHHHhhcCCCCch
Confidence 33 2345655555444433333333333332 23333333333332 5789999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEcccc
Q 003887 500 LHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE 579 (789)
Q Consensus 500 lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d 579 (789)
||..|.|.+|-..+++|++....||||||+++||||||+|.|||+|..|.+.+.|+||.|||.|++ ..|+.++|+.+.+
T Consensus 493 LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~-~~Gvsvml~~P~e 571 (731)
T KOG0347|consen 493 LHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARAN-SEGVSVMLCGPQE 571 (731)
T ss_pred hhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEeccccccccc-CCCeEEEEeChHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 6799999999999
Q ss_pred HHHHHHHHHHHHHcCC
Q 003887 580 ARFAGELVNSLIAAGQ 595 (789)
Q Consensus 580 ~~~~~~l~~~L~~~~~ 595 (789)
...+..|.+.|....+
T Consensus 572 ~~~~~KL~ktL~k~~d 587 (731)
T KOG0347|consen 572 VGPLKKLCKTLKKKED 587 (731)
T ss_pred hHHHHHHHHHHhhccC
Confidence 9999999999977654
No 29
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1e-53 Score=480.79 Aligned_cols=368 Identities=33% Similarity=0.544 Sum_probs=327.3
Q ss_pred CCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEE
Q 003887 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (789)
Q Consensus 224 i~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLI 303 (789)
+.+|.++++++.+.++|.+.||..|+|+|.++|+.+++++|+++++|||+|||++|++|++.++... ..++++||
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~-----~~~~~~li 101 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD-----LNACQALI 101 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC-----CCCceEEE
Confidence 5789999999999999999999999999999999999999999999999999999999999887432 24678999
Q ss_pred EcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccch
Q 003887 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (789)
Q Consensus 304 l~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~ 383 (789)
|+||++||.|+.+.+..++....+.+..++|+.....++..+..+++|+|+||++|.+++.+....+.++++|||||||+
T Consensus 102 l~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~ 181 (401)
T PTZ00424 102 LAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADE 181 (401)
T ss_pred ECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHH
Confidence 99999999999999999988778888889999888888888888899999999999999988888899999999999999
Q ss_pred hccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHHHHh
Q 003887 384 MFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463 (789)
Q Consensus 384 m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~ 463 (789)
+++++|...+..++..+++..|++++|||+|+.+..+...++.+|..+.+.........+.+.+..+.....+...+..+
T Consensus 182 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (401)
T PTZ00424 182 MLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDL 261 (401)
T ss_pred HHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988776555555566667666665444455555555
Q ss_pred cCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEE
Q 003887 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVV 543 (789)
Q Consensus 464 L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI 543 (789)
+.. ....++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||
T Consensus 262 ~~~-~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI 340 (401)
T PTZ00424 262 YET-LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVI 340 (401)
T ss_pred HHh-cCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEE
Confidence 543 2456899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHHHHHHcCCCcc
Q 003887 544 NFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVS 598 (789)
Q Consensus 544 ~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~L~~~~~~vp 598 (789)
+||+|.+...|+||+||+||.| +.|.|++|+++.+...+..+.+.+.......+
T Consensus 341 ~~~~p~s~~~y~qr~GRagR~g-~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~ 394 (401)
T PTZ00424 341 NYDLPASPENYIHRIGRSGRFG-RKGVAINFVTPDDIEQLKEIERHYNTQIEEMP 394 (401)
T ss_pred EECCCCCHHHEeecccccccCC-CCceEEEEEcHHHHHHHHHHHHHHCCcccccC
Confidence 9999999999999999999999 67999999999999888888776654444443
No 30
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-54 Score=470.24 Aligned_cols=402 Identities=33% Similarity=0.524 Sum_probs=359.3
Q ss_pred HHHHHHHcCcccccCCCCCCCCCccc----CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHH
Q 003887 204 VMEYKKSLAIRVSGFDVPRPVKTFED----CGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAF 279 (789)
Q Consensus 204 ~~~~r~~~~i~v~~~~~P~pi~sf~~----~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~ 279 (789)
....|+.+.+.+.|..+|+|+.+|.+ +.+...+++++...+|..|+|+|++|+|.++.+++++.|+|||+|||++|
T Consensus 111 ~~~~Rk~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf 190 (593)
T KOG0344|consen 111 LLGIRKSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAF 190 (593)
T ss_pred cccchhcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhh
Confidence 45577888999999999999999997 57899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHh--hhcCcEEEEEEcCCChHH-HHHHHhcCCcEEEeCH
Q 003887 280 VLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA--KSHGIRVSAVYGGMSKLD-QFKELKAGCEIVIATP 356 (789)
Q Consensus 280 llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~--~~~~i~v~~~~gg~~~~~-~~~~l~~~~dIiV~Tp 356 (789)
++|++.+|.....-....|-+++|+.|||+||.|++.++.++. ...++++..+........ ........++|+|.||
T Consensus 191 ~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP 270 (593)
T KOG0344|consen 191 NLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTP 270 (593)
T ss_pred hhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCH
Confidence 9999999976543222457889999999999999999999998 555555554443322211 1112223489999999
Q ss_pred HHHHHHHhhcc--ccccceeEEEEcccchhccC-CChHHHHHHHhhcC-CCceEEEEeccCcHHHHHHHHHHhCCCeEEe
Q 003887 357 GRLIDMLKMKA--LTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIR-PDRQTLLFSATMPRKVEKLAREILSDPVRVT 432 (789)
Q Consensus 357 ~~L~~~l~~~~--~~l~~i~~lVlDEah~m~~~-~f~~~i~~il~~~~-~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~ 432 (789)
-+|..++.... +.+..+.++|+||||++++. .|..|+..|+..+. ++..+-+||||++..+++++...+.++..+.
T Consensus 271 ~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vi 350 (593)
T KOG0344|consen 271 MRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVI 350 (593)
T ss_pred HHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEE
Confidence 99999998765 67899999999999999998 89999999988775 5667789999999999999999999999999
Q ss_pred eccccCccccceEEEEecCCCcchHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHH-HHcCCceeeccCCCCHHHHHH
Q 003887 433 VGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQL-AQKGFKAAALHGDKDQASRME 511 (789)
Q Consensus 433 i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L-~~~g~~v~~lhg~~~~~eR~~ 511 (789)
++..+.....|.|....+.+...|+..+.+++.... ..++|||+++++.|..|...| .-.++.+.+|||..++.+|++
T Consensus 351 vg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~-~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde 429 (593)
T KOG0344|consen 351 VGLRNSANETVDQELVFCGSEKGKLLALRQLVASGF-KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDE 429 (593)
T ss_pred EecchhHhhhhhhhheeeecchhHHHHHHHHHhccC-CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHH
Confidence 999999999999999999999999999999888653 459999999999999999999 677899999999999999999
Q ss_pred HHHHhhcCCccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHHHHH
Q 003887 512 ILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLI 591 (789)
Q Consensus 512 ~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~L~ 591 (789)
++++|+.|+++|||||++++||+|+.++++|||||+|.+...|+|||||+||+| +.|.||+|++..|...++-+.+.++
T Consensus 430 ~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag-~~g~Aitfytd~d~~~ir~iae~~~ 508 (593)
T KOG0344|consen 430 TMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAG-RSGKAITFYTDQDMPRIRSIAEVME 508 (593)
T ss_pred HHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCC-CCcceEEEeccccchhhhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 7899999999999999999999999
Q ss_pred HcCCCccHHHHHHHHh
Q 003887 592 AAGQNVSMELMDLAMK 607 (789)
Q Consensus 592 ~~~~~vp~~l~~~a~~ 607 (789)
..|..||.+++.+.+.
T Consensus 509 ~sG~evpe~~m~~~k~ 524 (593)
T KOG0344|consen 509 QSGCEVPEKIMGIKKL 524 (593)
T ss_pred HcCCcchHHHHhhhhh
Confidence 9999999999988763
No 31
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-52 Score=429.24 Aligned_cols=371 Identities=32% Similarity=0.486 Sum_probs=327.8
Q ss_pred CCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC--CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCC
Q 003887 222 RPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGP 299 (789)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~g--rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp 299 (789)
..+++|++++|+++|++.|..++|.+|+.||..++|.++.. +++|.++..|+|||.+|+|.||..+--. ..-|
T Consensus 87 yS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~-----~~~P 161 (477)
T KOG0332|consen 87 YSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD-----VVVP 161 (477)
T ss_pred cccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc-----ccCC
Confidence 45789999999999999999999999999999999999987 7999999999999999999999987322 2358
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhh-ccccccceeEEEE
Q 003887 300 IGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM-KALTMSRVTYLVL 378 (789)
Q Consensus 300 ~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~-~~~~l~~i~~lVl 378 (789)
.++.|+|||+||.|+.+.+.+..+..++++.+.+-+..... -. .-..+|+|+||+.+.+++.+ ..+.+..+.++|+
T Consensus 162 Q~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~r-G~--~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVl 238 (477)
T KOG0332|consen 162 QCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKR-GN--KLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVL 238 (477)
T ss_pred CceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCccccc-CC--cchhheeeCCCccHHHHHHHHHhhChhhceEEEe
Confidence 89999999999999999999998888888887776652110 00 01267999999999999987 7788999999999
Q ss_pred cccchhcc-CCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchH
Q 003887 379 DEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKL 457 (789)
Q Consensus 379 DEah~m~~-~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~ 457 (789)
||||.|++ .||.++-..|...++++.|+|+||||+...+..++..+..++..+.+.........|.|.+..|.....|+
T Consensus 239 DEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~ 318 (477)
T KOG0332|consen 239 DEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKY 318 (477)
T ss_pred cchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHH
Confidence 99999887 57999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCC
Q 003887 458 PWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIK 537 (789)
Q Consensus 458 ~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~ 537 (789)
..|.+ |.....-++.||||.++..+..|+..|...|+.|.+|||+|...+|..++++|+.|..+|||+|++++||+|++
T Consensus 319 ~~l~~-lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~ 397 (477)
T KOG0332|consen 319 QALVN-LYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVA 397 (477)
T ss_pred HHHHH-HHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccc
Confidence 99998 55566778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEcCCC------CHHHHHHHHhhcCCCCCCCeEEEEEEccc-cHHHHHHHHHHHHHcC-CCccHHHH
Q 003887 538 SIKSVVNFDIAR------DMDMHVHRIGRTGRAGDKDGTAYTLVTQK-EARFAGELVNSLIAAG-QNVSMELM 602 (789)
Q Consensus 538 ~v~~VI~~d~p~------s~~~y~QriGR~gR~G~~~G~~i~l~~~~-d~~~~~~l~~~L~~~~-~~vp~~l~ 602 (789)
.|++|||||+|. +++.|+|||||+||.| +.|.++.|+... ....+..|.+++...- ..+|..+.
T Consensus 398 qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFG-kkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~d~~ 469 (477)
T KOG0332|consen 398 QVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFG-KKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPDDLD 469 (477)
T ss_pred eEEEEEecCCccccCCCCCHHHHHHHhccccccc-ccceEEEeecccCcHHHHHHHHHHHhhcceecCCccHH
Confidence 999999999996 6899999999999999 789999998765 4566667766664333 33444333
No 32
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-52 Score=438.00 Aligned_cols=361 Identities=38% Similarity=0.599 Sum_probs=335.5
Q ss_pred CCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEE
Q 003887 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (789)
Q Consensus 224 i~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLI 303 (789)
-..|..+||+..++++|.+.||..|||||+..+|.+|.++|++..+.||||||.+|++||+.++.... ..|-++||
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s----~~g~Rali 95 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS----QTGLRALI 95 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc----ccccceee
Confidence 46799999999999999999999999999999999999999999999999999999999999986543 45788999
Q ss_pred EcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccch
Q 003887 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (789)
Q Consensus 304 l~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~ 383 (789)
+.|||+||.|..+.++.+....++++++++||....+|+..+..++|||++||+++..+.-.-.+.|+.+.|||+||||+
T Consensus 96 lsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadr 175 (529)
T KOG0337|consen 96 LSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADR 175 (529)
T ss_pred ccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhH
Confidence 99999999999999999999999999999999999999999999999999999999988766678899999999999999
Q ss_pred hccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHHHHh
Q 003887 384 MFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463 (789)
Q Consensus 384 m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~ 463 (789)
++.+||.+++..++..++..+|+++||||+|+.+..+++.-+.+|..+.+.-.....+.....+..+ ...+|...|+.+
T Consensus 176 lfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~-~~a~K~aaLl~i 254 (529)
T KOG0337|consen 176 LFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRV-RKAEKEAALLSI 254 (529)
T ss_pred HHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeee-ccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988655555556666666666 456789999999
Q ss_pred cCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEE
Q 003887 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVV 543 (789)
Q Consensus 464 L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI 543 (789)
+.....+.+++|||.++.+++.+...|...|+.+..++|.|++.-|...+..|..++..+||.|++++||+|||....||
T Consensus 255 l~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvi 334 (529)
T KOG0337|consen 255 LGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVI 334 (529)
T ss_pred HhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccc
Confidence 98887778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHHHH
Q 003887 544 NFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSL 590 (789)
Q Consensus 544 ~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~L 590 (789)
|||+|....-|+||+||+.|+| ..|++|.|+.+++..++-+|--.|
T Consensus 335 nyd~p~~~klFvhRVgr~arag-rtg~aYs~V~~~~~~yl~DL~lfl 380 (529)
T KOG0337|consen 335 NYDFPPDDKLFVHRVGRVARAG-RTGRAYSLVASTDDPYLLDLQLFL 380 (529)
T ss_pred cccCCCCCceEEEEecchhhcc-ccceEEEEEecccchhhhhhhhhc
Confidence 9999999999999999999999 689999999999988887775544
No 33
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.5e-52 Score=431.85 Aligned_cols=367 Identities=33% Similarity=0.547 Sum_probs=336.6
Q ss_pred CCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEE
Q 003887 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (789)
Q Consensus 224 i~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLI 303 (789)
+.+|++++|++.|++.|...||.+|+.||+.||..+..|+|+++.+++|+|||.+|+++++.++-- ...-..||+
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~-----~~ke~qali 99 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM-----SVKETQALI 99 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc-----chHHHHHHH
Confidence 458999999999999999999999999999999999999999999999999999999999998721 122455899
Q ss_pred EcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhc-CCcEEEeCHHHHHHHHhhccccccceeEEEEcccc
Q 003887 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD 382 (789)
Q Consensus 304 l~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah 382 (789)
++|||+||.|+.+....+....+.++..+.||.....+...+.. .++|+|+||+++.+++....+....++++|+||||
T Consensus 100 laPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaD 179 (397)
T KOG0327|consen 100 LAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEAD 179 (397)
T ss_pred hcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchH
Confidence 99999999999999999988889999999999988866555544 58999999999999999888888889999999999
Q ss_pred hhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHHHH
Q 003887 383 RMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462 (789)
Q Consensus 383 ~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~ 462 (789)
.|+..+|.++|..|+.+++++.|++++|||+|.++..+.+.|+.+|+.+.+.....+.+.+.|.+..+.... |+..|..
T Consensus 180 EmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~-k~~~l~d 258 (397)
T KOG0327|consen 180 EMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE-KLDTLCD 258 (397)
T ss_pred hhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc-cccHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998886554 8888888
Q ss_pred hcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEE
Q 003887 463 KLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSV 542 (789)
Q Consensus 463 ~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~V 542 (789)
+.. .-.+.+||||+++.++.|...|..+++.+..+||+|.+.+|..++..|+.|..+|||+|++++||+|+..+..|
T Consensus 259 l~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slv 335 (397)
T KOG0327|consen 259 LYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLV 335 (397)
T ss_pred HHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhccee
Confidence 776 45689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHHHHHHcCCCccHH
Q 003887 543 VNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSME 600 (789)
Q Consensus 543 I~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~L~~~~~~vp~~ 600 (789)
|||++|.+.++|+||+||+||.| ++|.++.+++..+...++++.+.+.-.-..+|..
T Consensus 336 inydlP~~~~~yihR~gr~gr~g-rkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~ 392 (397)
T KOG0327|consen 336 VNYDLPARKENYIHRIGRAGRFG-RKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSN 392 (397)
T ss_pred eeeccccchhhhhhhcccccccC-CCceeeeeehHhhHHHHHhHHHhcCCcceecccc
Confidence 99999999999999999999999 7899999999999999998887765444444443
No 34
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=2.1e-50 Score=437.77 Aligned_cols=356 Identities=31% Similarity=0.460 Sum_probs=322.2
Q ss_pred cCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccC
Q 003887 217 GFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKE 296 (789)
Q Consensus 217 ~~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~ 296 (789)
+.-.|.-...|+++-|...++..|++.+|..||++|..|||.++.+.|+|+++..|+|||++|.+.++..+.-. .
T Consensus 17 ~DV~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~-----~ 91 (980)
T KOG4284|consen 17 IDVQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR-----S 91 (980)
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc-----c
Confidence 34456677889999999999999999999999999999999999999999999999999999998888776332 4
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHHhhh-cCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeE
Q 003887 297 EGPIGVICAPTRELAHQIYLETKKFAKS-HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTY 375 (789)
Q Consensus 297 ~gp~vLIl~PTreLa~Qi~~~~~k~~~~-~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~ 375 (789)
..+.+|||+|||+||.||.+.+.+++.. .+++|.+++||.........++. ++|+|+|||||..+++...++.+.+.+
T Consensus 92 ~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~s~vrl 170 (980)
T KOG4284|consen 92 SHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNMSHVRL 170 (980)
T ss_pred CcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCCccceeE
Confidence 5688999999999999999999999874 48999999999988877766665 889999999999999999999999999
Q ss_pred EEEcccchhcc-CCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCc
Q 003887 376 LVLDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDA 454 (789)
Q Consensus 376 lVlDEah~m~~-~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~ 454 (789)
+||||||.+++ ..|..+|..|++.++..+|++.||||.|..+..++.+||.+|..+.........-.|.|.+..++...
T Consensus 171 fVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~n 250 (980)
T KOG4284|consen 171 FVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPN 250 (980)
T ss_pred EEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCc
Confidence 99999999998 56999999999999999999999999999999999999999999999888888888999988877643
Q ss_pred c-------hHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEee
Q 003887 455 E-------KLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT 527 (789)
Q Consensus 455 ~-------k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT 527 (789)
. |+..|-.++... +-.+.||||+....|+-++.+|...|+.|.+|.|.|+|.+|..+++.+++-.++|||+|
T Consensus 251 nsveemrlklq~L~~vf~~i-py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsT 329 (980)
T KOG4284|consen 251 NSVEEMRLKLQKLTHVFKSI-PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVST 329 (980)
T ss_pred chHHHHHHHHHHHHHHHhhC-chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEec
Confidence 2 444555555443 44589999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccH
Q 003887 528 DVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (789)
Q Consensus 528 ~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~ 580 (789)
|+.+||||-++|++|||.|+|.+.++|.|||||+||.| ..|.+++|++....
T Consensus 330 DLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG-~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 330 DLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFG-AHGAAVTLLEDERE 381 (980)
T ss_pred chhhccCCccccceEEecCCCcchHHHHHHhhhccccc-ccceeEEEeccchh
Confidence 99999999999999999999999999999999999999 56999999987654
No 35
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.6e-47 Score=455.10 Aligned_cols=344 Identities=19% Similarity=0.277 Sum_probs=273.5
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHH
Q 003887 231 GFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTREL 310 (789)
Q Consensus 231 ~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreL 310 (789)
.|++.+.+.|.+.||.+|+++|.++|+.+++|+|+|+++|||||||++|++|+|..++.. .++++|||+|||+|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~------~~~~aL~l~PtraL 93 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD------PRATALYLAPTKAL 93 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC------CCcEEEEEcChHHH
Confidence 488999999999999999999999999999999999999999999999999999998653 35789999999999
Q ss_pred HHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhc----cccccceeEEEEcccchhcc
Q 003887 311 AHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK----ALTMSRVTYLVLDEADRMFD 386 (789)
Q Consensus 311 a~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~----~~~l~~i~~lVlDEah~m~~ 386 (789)
|.|+.+.++++. ..++++..+.|+.+. .+...+..+++|||+||++|...+... ...++++++|||||||+|.+
T Consensus 94 a~q~~~~l~~l~-~~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g 171 (742)
T TIGR03817 94 AADQLRAVRELT-LRGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG 171 (742)
T ss_pred HHHHHHHHHHhc-cCCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC
Confidence 999999999987 347888777776654 455667778999999999997543221 12378899999999999976
Q ss_pred CCChHHHHHHHhhc-------CCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCC-------
Q 003887 387 LGFEPQIRSIVGQI-------RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPS------- 452 (789)
Q Consensus 387 ~~f~~~i~~il~~~-------~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~------- 452 (789)
. |...+..++..+ ..++|++++|||+++..+ ++..++..|..+.. ....... ..+...+.+.
T Consensus 172 ~-fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i~-~~~~~~~-~~~~~~~~p~~~~~~~~ 247 (742)
T TIGR03817 172 V-FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVAVT-EDGSPRG-ARTVALWEPPLTELTGE 247 (742)
T ss_pred c-cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEEEC-CCCCCcC-ceEEEEecCCccccccc
Confidence 4 776655554443 467899999999998754 67888888765432 2221111 1222211111
Q ss_pred ---------CcchHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHc--------CCceeeccCCCCHHHHHHHHHH
Q 003887 453 ---------DAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK--------GFKAAALHGDKDQASRMEILQK 515 (789)
Q Consensus 453 ---------~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~--------g~~v~~lhg~~~~~eR~~~l~~ 515 (789)
...+...|..++. ...++||||+++..++.++..|... +..+..+||++++.+|.++++.
T Consensus 248 ~~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~ 324 (742)
T TIGR03817 248 NGAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERA 324 (742)
T ss_pred cccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHH
Confidence 0123334444443 2569999999999999999998764 5688999999999999999999
Q ss_pred hhcCCccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEcc--ccHHHHHHHHHHH
Q 003887 516 FKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ--KEARFAGELVNSL 590 (789)
Q Consensus 516 F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~--~d~~~~~~l~~~L 590 (789)
|++|++++||||+++++||||+++++||||++|.++..|+||+||+||.| +.|.+++++.. .|..++..+.+.+
T Consensus 325 f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G-~~g~ai~v~~~~~~d~~~~~~~~~~~ 400 (742)
T TIGR03817 325 LRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRG-QGALVVLVARDDPLDTYLVHHPEALF 400 (742)
T ss_pred HHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCC-CCcEEEEEeCCChHHHHHHhCHHHHh
Confidence 99999999999999999999999999999999999999999999999999 67999988863 3444454444444
No 36
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7e-48 Score=409.65 Aligned_cols=353 Identities=30% Similarity=0.470 Sum_probs=286.3
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHHHHHHH---------cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEE
Q 003887 233 STQLMHAISKQGYEKPTSIQCQALPIIL---------SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (789)
Q Consensus 233 ~~~l~~~l~~~g~~~ptpiQ~~ai~~il---------~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLI 303 (789)
...+.+++.++++....|+|.+.+||++ ..+|+++.||||||||++|.||+++.+...+ -+.-++||
T Consensus 145 ea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~----v~~LRavV 220 (620)
T KOG0350|consen 145 EATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP----VKRLRAVV 220 (620)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCC----ccceEEEE
Confidence 3445677999999999999999999996 2589999999999999999999999886653 23467999
Q ss_pred EcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcC-----CcEEEeCHHHHHHHHh-hccccccceeEEE
Q 003887 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAG-----CEIVIATPGRLIDMLK-MKALTMSRVTYLV 377 (789)
Q Consensus 304 l~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~-----~dIiV~Tp~~L~~~l~-~~~~~l~~i~~lV 377 (789)
|+||++|+.|++..+.+++...++.|+.+.|..+.......|... .||+|+||+||++++. ...+.|.++.|+|
T Consensus 221 ivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLV 300 (620)
T KOG0350|consen 221 IVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLV 300 (620)
T ss_pred EeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEE
Confidence 999999999999999999999999999888888877776766542 4999999999999998 4678899999999
Q ss_pred EcccchhccCCChHHHHHHHhhcC----------------------------------CCceEEEEeccCcHHHHHHHHH
Q 003887 378 LDEADRMFDLGFEPQIRSIVGQIR----------------------------------PDRQTLLFSATMPRKVEKLARE 423 (789)
Q Consensus 378 lDEah~m~~~~f~~~i~~il~~~~----------------------------------~~~q~ll~SATl~~~v~~l~~~ 423 (789)
|||||||++..|...+-.++.++. +..+.+++|||+...-..+...
T Consensus 301 IDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l 380 (620)
T KOG0350|consen 301 IDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDL 380 (620)
T ss_pred echHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhh
Confidence 999999988655544333332221 2235788999987777777777
Q ss_pred HhCCCeEEeecc----ccCccccceEEEEecCCCcchHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHH----HcCC
Q 003887 424 ILSDPVRVTVGE----VGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLA----QKGF 495 (789)
Q Consensus 424 ~l~~p~~i~i~~----~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~----~~g~ 495 (789)
-+..|..+.+.. ....+..+.+....+ ....|...+..++... .-.++|+|+++...+.+++..|+ ...+
T Consensus 381 ~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~-~~~~kpl~~~~lI~~~-k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~ 458 (620)
T KOG0350|consen 381 TLHIPRLFHVSKPLIGRYSLPSSLSHRLVVT-EPKFKPLAVYALITSN-KLNRTLCFVNSVSSANRLAHVLKVEFCSDNF 458 (620)
T ss_pred hcCCCceEEeecccceeeecChhhhhceeec-ccccchHhHHHHHHHh-hcceEEEEecchHHHHHHHHHHHHHhccccc
Confidence 777785444431 222333333433333 3334555566666543 34699999999999999999987 2367
Q ss_pred ceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEE
Q 003887 496 KAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLV 575 (789)
Q Consensus 496 ~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~ 575 (789)
++..+.|.++...|...+++|+.|.++||||+|+++||+|+.+++.|||||+|.+...|+||+|||+|+| ..|.||+++
T Consensus 459 ~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAg-q~G~a~tll 537 (620)
T KOG0350|consen 459 KVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAG-QDGYAITLL 537 (620)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhccccccc-CCceEEEee
Confidence 7888999999999999999999999999999999999999999999999999999999999999999999 679999999
Q ss_pred ccccHHHHHHHHHHHHH
Q 003887 576 TQKEARFAGELVNSLIA 592 (789)
Q Consensus 576 ~~~d~~~~~~l~~~L~~ 592 (789)
...+.+.+.++++....
T Consensus 538 ~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 538 DKHEKRLFSKLLKKTNL 554 (620)
T ss_pred ccccchHHHHHHHHhcc
Confidence 99999888777766544
No 37
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=8.6e-46 Score=436.65 Aligned_cols=344 Identities=18% Similarity=0.277 Sum_probs=268.4
Q ss_pred Cccc--CCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEE
Q 003887 226 TFED--CGFSTQLMHAISK-QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (789)
Q Consensus 226 sf~~--~~l~~~l~~~l~~-~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vL 302 (789)
.|.. +.....+...+++ .||..++|+|.++|+.++.|+|+|+++|||+|||++|++|+|.. ++.+|
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-----------~GiTL 504 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-----------PGITL 504 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-----------CCcEE
Confidence 4554 4455566666554 59999999999999999999999999999999999999999853 35699
Q ss_pred EEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHh------cCCcEEEeCHHHHHH--HHhhc---ccccc
Q 003887 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK------AGCEIVIATPGRLID--MLKMK---ALTMS 371 (789)
Q Consensus 303 Il~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~------~~~dIiV~Tp~~L~~--~l~~~---~~~l~ 371 (789)
||+|+++|+.+++..+.. .++.+..+.++....++...+. ..++|||+||++|.. .+... .....
T Consensus 505 VISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~ 580 (1195)
T PLN03137 505 VISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRG 580 (1195)
T ss_pred EEeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcc
Confidence 999999999865555444 3899999999988766654433 358999999999862 22211 11234
Q ss_pred ceeEEEEcccchhccCC--ChHHHHHH--HhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEE
Q 003887 372 RVTYLVLDEADRMFDLG--FEPQIRSI--VGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVV 447 (789)
Q Consensus 372 ~i~~lVlDEah~m~~~~--f~~~i~~i--l~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~ 447 (789)
.+.+|||||||+|++|| |.+.+..+ +...-+..++++||||+++.+...+...+.....+.+. ......++. +
T Consensus 581 ~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr-~Sf~RpNL~--y 657 (1195)
T PLN03137 581 LLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFR-QSFNRPNLW--Y 657 (1195)
T ss_pred ccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEee-cccCccceE--E
Confidence 58999999999999998 66766653 44445678999999999998887666655432222111 112222332 2
Q ss_pred EecCCCcchHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEee
Q 003887 448 HVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT 527 (789)
Q Consensus 448 ~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT 527 (789)
.++.........+..++.........||||.++..|+.++..|...|+.+..+||+|++.+|..+++.|..|+++|||||
T Consensus 658 ~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVAT 737 (1195)
T PLN03137 658 SVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICAT 737 (1195)
T ss_pred EEeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEe
Confidence 33332222244566666544445688999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHH
Q 003887 528 DVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVN 588 (789)
Q Consensus 528 ~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~ 588 (789)
+++++|||+|+|++||||++|.+++.|+||+||+||.| ..+.|++|++..|...+..++.
T Consensus 738 dAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG-~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 738 VAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDG-QRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred chhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCC-CCceEEEEecHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999 6899999999888776666653
No 38
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.9e-45 Score=417.71 Aligned_cols=327 Identities=20% Similarity=0.317 Sum_probs=259.4
Q ss_pred HcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003887 242 KQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 242 ~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~ 321 (789)
..||..|+|+|.++|+.+++++|+++++|||+|||++|++|++.. ++.+|||+||++|+.|++..+..+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~-----------~~~~lVi~P~~~L~~dq~~~l~~~ 74 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS-----------DGITLVISPLISLMEDQVLQLKAS 74 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc-----------CCcEEEEecHHHHHHHHHHHHHHc
Confidence 358999999999999999999999999999999999999998752 346899999999999998888754
Q ss_pred hhhcCcEEEEEEcCCChHHHH---HHHhc-CCcEEEeCHHHHHHHH-hhccc-cccceeEEEEcccchhccCC--ChHHH
Q 003887 322 AKSHGIRVSAVYGGMSKLDQF---KELKA-GCEIVIATPGRLIDML-KMKAL-TMSRVTYLVLDEADRMFDLG--FEPQI 393 (789)
Q Consensus 322 ~~~~~i~v~~~~gg~~~~~~~---~~l~~-~~dIiV~Tp~~L~~~l-~~~~~-~l~~i~~lVlDEah~m~~~~--f~~~i 393 (789)
++.+..+.++....++. ..+.. ..+|+++||++|.... ....+ .+.++.+|||||||++.+|+ |.+.+
T Consensus 75 ----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~ 150 (470)
T TIGR00614 75 ----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDY 150 (470)
T ss_pred ----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHH
Confidence 78888887776655332 22333 4899999999975422 11122 56789999999999999987 55655
Q ss_pred HHH--HhhcCCCceEEEEeccCcHHHHHHHHHHhC--CCeEEeeccccCccccceEEEEecCCCcchHHHHHHhcCCCCC
Q 003887 394 RSI--VGQIRPDRQTLLFSATMPRKVEKLAREILS--DPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMID 469 (789)
Q Consensus 394 ~~i--l~~~~~~~q~ll~SATl~~~v~~l~~~~l~--~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~ 469 (789)
..+ +....++.++++||||+++.+...+...+. +|..+.. . ....++... ...........+...+.....
T Consensus 151 ~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~-s--~~r~nl~~~--v~~~~~~~~~~l~~~l~~~~~ 225 (470)
T TIGR00614 151 KALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCT-S--FDRPNLYYE--VRRKTPKILEDLLRFIRKEFK 225 (470)
T ss_pred HHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC-C--CCCCCcEEE--EEeCCccHHHHHHHHHHHhcC
Confidence 543 333346789999999999987766555543 4433322 1 122223222 222222345556666654334
Q ss_pred CCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEcCCC
Q 003887 470 DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIAR 549 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~ 549 (789)
...+||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++||+|++|.
T Consensus 226 ~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~ 305 (470)
T TIGR00614 226 GKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPK 305 (470)
T ss_pred CCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCC
Confidence 55679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHHH
Q 003887 550 DMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNS 589 (789)
Q Consensus 550 s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~ 589 (789)
++..|+||+||+||.| ..|.|++|+++.|...+..++..
T Consensus 306 s~~~y~Qr~GRaGR~G-~~~~~~~~~~~~d~~~~~~~~~~ 344 (470)
T TIGR00614 306 SMESYYQESGRAGRDG-LPSECHLFYAPADINRLRRLLME 344 (470)
T ss_pred CHHHHHhhhcCcCCCC-CCceEEEEechhHHHHHHHHHhc
Confidence 9999999999999999 68999999999998887777654
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=4.5e-43 Score=411.08 Aligned_cols=333 Identities=19% Similarity=0.344 Sum_probs=260.4
Q ss_pred CCHHHHHHHHH-cCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHH
Q 003887 232 FSTQLMHAISK-QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTREL 310 (789)
Q Consensus 232 l~~~l~~~l~~-~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreL 310 (789)
++....+.|++ .||..|+|+|.++|+.++.++|+++++|||+|||++|++|++.. ...+|||+|+++|
T Consensus 9 ~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-----------~g~tlVisPl~sL 77 (607)
T PRK11057 9 LESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-----------DGLTLVVSPLISL 77 (607)
T ss_pred chhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-----------CCCEEEEecHHHH
Confidence 33444455554 59999999999999999999999999999999999999999853 2458999999999
Q ss_pred HHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHH---HHhc-CCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhcc
Q 003887 311 AHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD 386 (789)
Q Consensus 311 a~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~---~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~ 386 (789)
+.|++..++.+ ++.+.++.++........ .+.. ..+|+++||++|........+...++++|||||||++.+
T Consensus 78 ~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~ 153 (607)
T PRK11057 78 MKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQ 153 (607)
T ss_pred HHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCcccccc
Confidence 99998888765 788888877776654432 2222 478999999998742222233455789999999999999
Q ss_pred CC--ChHHHHHH--HhhcCCCceEEEEeccCcHHHHHHHHHHh--CCCeEEeeccccCccccceEEEEecCCCcchHHHH
Q 003887 387 LG--FEPQIRSI--VGQIRPDRQTLLFSATMPRKVEKLAREIL--SDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWL 460 (789)
Q Consensus 387 ~~--f~~~i~~i--l~~~~~~~q~ll~SATl~~~v~~l~~~~l--~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L 460 (789)
|+ |.+.+..+ +....+..+++++|||+++.+...+...+ .+|... +... ...++.. ..+ ....+...+
T Consensus 154 ~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~-~~~~--~r~nl~~--~v~-~~~~~~~~l 227 (607)
T PRK11057 154 WGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSF--DRPNIRY--TLV-EKFKPLDQL 227 (607)
T ss_pred ccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEE-ECCC--CCCccee--eee-eccchHHHH
Confidence 87 55555433 22233678999999999988765444443 344322 2211 1222221 122 223345556
Q ss_pred HHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCcc
Q 003887 461 LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIK 540 (789)
Q Consensus 461 ~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~ 540 (789)
+..+... ...++||||+++..|+.++..|...++.+..+|++|++.+|..+++.|+.|+++|||||+++++|||+|+|+
T Consensus 228 ~~~l~~~-~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~ 306 (607)
T PRK11057 228 MRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVR 306 (607)
T ss_pred HHHHHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcC
Confidence 6655432 456899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHH
Q 003887 541 SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELV 587 (789)
Q Consensus 541 ~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~ 587 (789)
+||+||+|.+...|+||+||+||.| ..|.|++|+++.|...+..++
T Consensus 307 ~VI~~d~P~s~~~y~Qr~GRaGR~G-~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 307 FVVHFDIPRNIESYYQETGRAGRDG-LPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred EEEEeCCCCCHHHHHHHhhhccCCC-CCceEEEEeCHHHHHHHHHHH
Confidence 9999999999999999999999999 689999999999987766654
No 40
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=2.1e-42 Score=414.81 Aligned_cols=400 Identities=19% Similarity=0.257 Sum_probs=297.2
Q ss_pred ChhccCCCHHHHHHHHHHcCccccc--CCCC-----CCCCCcccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHHcC--
Q 003887 193 SASISGMSEQDVMEYKKSLAIRVSG--FDVP-----RPVKTFEDCGFSTQLMHAISK-QGYEKPTSIQCQALPIILSG-- 262 (789)
Q Consensus 193 ~~~i~~~s~~~~~~~r~~~~i~v~~--~~~P-----~pi~sf~~~~l~~~l~~~l~~-~g~~~ptpiQ~~ai~~il~g-- 262 (789)
.+.+.+|....|...|.+..-.+.. ..+- +....=..+..+..+.+.+.+ .+| +|||+|.++|+.++++
T Consensus 390 ~~~l~~lg~~~w~~~k~~~~~~~~~~a~~l~~l~a~r~~~~~~~~~~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~ 468 (926)
T TIGR00580 390 NPALDKLGGKSWEKTKAKVKKSVREIAAKLIELYAKRKAIKGHAFPPDLEWQQEFEDSFPF-EETPDQLKAIEEIKADME 468 (926)
T ss_pred CCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhc
Confidence 4567788888898877665222110 0000 000000012344556666655 478 5999999999999975
Q ss_pred ----CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCCh
Q 003887 263 ----RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSK 338 (789)
Q Consensus 263 ----rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~ 338 (789)
+|+|++++||+|||.+|++|++..+. .+++++||+||++||.|+++.+++++...++++..++|+.+.
T Consensus 469 ~~~~~d~Ll~adTGsGKT~val~a~l~al~--------~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~ 540 (926)
T TIGR00580 469 SPRPMDRLVCGDVGFGKTEVAMRAAFKAVL--------DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSA 540 (926)
T ss_pred ccCcCCEEEECCCCccHHHHHHHHHHHHHH--------hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccH
Confidence 79999999999999999999998873 357899999999999999999999988888999889887765
Q ss_pred HHH---HHHHhc-CCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEeccCc
Q 003887 339 LDQ---FKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (789)
Q Consensus 339 ~~~---~~~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~ 414 (789)
.++ ...+.. .++|||+||..| ...+.+.++++|||||+|+ |.......+..++...|+|+||||+.
T Consensus 541 ~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahr-----fgv~~~~~L~~~~~~~~vL~~SATpi 610 (926)
T TIGR00580 541 KEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQR-----FGVKQKEKLKELRTSVDVLTLSATPI 610 (926)
T ss_pred HHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeecccc-----cchhHHHHHHhcCCCCCEEEEecCCC
Confidence 433 344554 489999999433 3456788999999999999 44455667777888899999999987
Q ss_pred HHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcch-HHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHc
Q 003887 415 RKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEK-LPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK 493 (789)
Q Consensus 415 ~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k-~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~ 493 (789)
+....++...+.++..+..... ....+.+.+... .... ...+...+ ...++++|||++++.++.+++.|++.
T Consensus 611 prtl~~~l~g~~d~s~I~~~p~--~R~~V~t~v~~~--~~~~i~~~i~~el---~~g~qv~if~n~i~~~e~l~~~L~~~ 683 (926)
T TIGR00580 611 PRTLHMSMSGIRDLSIIATPPE--DRLPVRTFVMEY--DPELVREAIRREL---LRGGQVFYVHNRIESIEKLATQLREL 683 (926)
T ss_pred HHHHHHHHhcCCCcEEEecCCC--CccceEEEEEec--CHHHHHHHHHHHH---HcCCeEEEEECCcHHHHHHHHHHHHh
Confidence 7665555555556655544322 222344433322 1111 12222222 34679999999999999999999985
Q ss_pred --CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEcCCC-CHHHHHHHHhhcCCCCCCCeE
Q 003887 494 --GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIAR-DMDMHVHRIGRTGRAGDKDGT 570 (789)
Q Consensus 494 --g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~-s~~~y~QriGR~gR~G~~~G~ 570 (789)
++++..+||.|++.+|+.++..|++|+++|||||+++++|+|||++++||++++|. ....|.||+||+||.| +.|.
T Consensus 684 ~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g-~~g~ 762 (926)
T TIGR00580 684 VPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSK-KKAY 762 (926)
T ss_pred CCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCC-CCeE
Confidence 78999999999999999999999999999999999999999999999999999976 5778999999999998 7899
Q ss_pred EEEEEcccc--HHHHHHHHHHHHHcCC---CccHHHHHHHHhcCcccccccccCCCCCCCCCCCC
Q 003887 571 AYTLVTQKE--ARFAGELVNSLIAAGQ---NVSMELMDLAMKDGRFRSKRDARKGGGKKGKGRGG 630 (789)
Q Consensus 571 ~i~l~~~~d--~~~~~~l~~~L~~~~~---~vp~~l~~~a~~~~~~~~~~~~r~~g~~~g~g~gg 630 (789)
||+|+.+.+ .....+.++.|++... .+..++.|+.+ |+.|...|..+.|
T Consensus 763 aill~~~~~~l~~~~~~RL~~~~~~~~~g~gf~ia~~Dl~~-----------Rg~G~~lG~~QsG 816 (926)
T TIGR00580 763 AYLLYPHQKALTEDAQKRLEAIQEFSELGAGFKIALHDLEI-----------RGAGNLLGEEQSG 816 (926)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHhhcchhhHHHHHHHHHh-----------cCCcCCCCCcccC
Confidence 999987653 2455566666766554 78777778777 5566666655544
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.3e-42 Score=420.86 Aligned_cols=342 Identities=22% Similarity=0.295 Sum_probs=254.0
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccc-cCCCCEEEEEcCcHHH
Q 003887 232 FSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQ-KEEGPIGVICAPTREL 310 (789)
Q Consensus 232 l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~-~~~gp~vLIl~PTreL 310 (789)
|++.+.+.+.+ +|..|||+|.++|+.+++|+|+|++||||||||++|++|++.+++...... ...++++|||+||++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 56666666655 799999999999999999999999999999999999999999987543211 1346789999999999
Q ss_pred HHHHHHHHHH-------Hhh----hc-CcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccc--cccceeEE
Q 003887 311 AHQIYLETKK-------FAK----SH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL--TMSRVTYL 376 (789)
Q Consensus 311 a~Qi~~~~~k-------~~~----~~-~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~--~l~~i~~l 376 (789)
+.|+++.+.. ++. .. ++++.+.+|+.+...+...+...++|+||||++|..++....+ .+.++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999876553 221 12 6788999999888777777777899999999999888765432 47899999
Q ss_pred EEcccchhccCCChHHHHHHHhh----cCCCceEEEEeccCcHHHHHHHHHHhCC-----CeEEeeccccCccccceEEE
Q 003887 377 VLDEADRMFDLGFEPQIRSIVGQ----IRPDRQTLLFSATMPRKVEKLAREILSD-----PVRVTVGEVGMANEDITQVV 447 (789)
Q Consensus 377 VlDEah~m~~~~f~~~i~~il~~----~~~~~q~ll~SATl~~~v~~l~~~~l~~-----p~~i~i~~~~~~~~~i~q~~ 447 (789)
||||||.|.+..+...+..++.. ..+..|+|++|||+++ ...++.++... +..+.+-..... ..+...+
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~-~~~va~~L~~~~~~~~~r~~~iv~~~~~-k~~~i~v 254 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEP-LEEVAKFLVGYEDDGEPRDCEIVDARFV-KPFDIKV 254 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCC-HHHHHHHhcCccccCCCCceEEEccCCC-ccceEEE
Confidence 99999999987766655544433 3367899999999975 34555544331 111111111100 1111110
Q ss_pred E-ec-----CCCcchHHHHHHhcCCCC-CCCcEEEEecccccHHHHHHHHHHc------CCceeeccCCCCHHHHHHHHH
Q 003887 448 H-VI-----PSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQK------GFKAAALHGDKDQASRMEILQ 514 (789)
Q Consensus 448 ~-~~-----~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~------g~~v~~lhg~~~~~eR~~~l~ 514 (789)
. .. .........+...|.... ...++||||+++..|+.++..|... +..+..+||++++.+|..+++
T Consensus 255 ~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~ 334 (876)
T PRK13767 255 ISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEE 334 (876)
T ss_pred eccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHH
Confidence 0 00 011111222233332221 2468999999999999999999873 467999999999999999999
Q ss_pred HhhcCCccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEc
Q 003887 515 KFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVT 576 (789)
Q Consensus 515 ~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~ 576 (789)
.|++|.++|||||+++++||||+++++||+|+.|.++..|+||+||+||.+...+..+++..
T Consensus 335 ~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 335 KLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred HHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 99999999999999999999999999999999999999999999999997533333443333
No 42
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=7.9e-43 Score=418.77 Aligned_cols=338 Identities=23% Similarity=0.356 Sum_probs=265.2
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEE
Q 003887 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPI-ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (789)
Q Consensus 226 sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~-il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl 304 (789)
.|++++||+.+++.+.+.||.+|+|+|.++++. +++++|+|+++|||||||++|.+|++.++. .+.++|||
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~--------~~~kal~i 73 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA--------RGGKALYI 73 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh--------cCCcEEEE
Confidence 478899999999999999999999999999998 779999999999999999999999999984 25679999
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchh
Q 003887 305 APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM 384 (789)
Q Consensus 305 ~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m 384 (789)
+||++||.|+++.++++.. .++++..++|+...... ....++|+||||+++..++.+....+.++++|||||+|.|
T Consensus 74 ~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l 149 (737)
T PRK02362 74 VPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLI 149 (737)
T ss_pred eChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECcccc
Confidence 9999999999999998754 48899999998654432 2345899999999999998876667889999999999999
Q ss_pred ccCCChHHHHHHHhhc---CCCceEEEEeccCcHHHHHHHHHHhCC-------CeEEeeccc--cCccccceEEEEecCC
Q 003887 385 FDLGFEPQIRSIVGQI---RPDRQTLLFSATMPRKVEKLAREILSD-------PVRVTVGEV--GMANEDITQVVHVIPS 452 (789)
Q Consensus 385 ~~~~f~~~i~~il~~~---~~~~q~ll~SATl~~~v~~l~~~~l~~-------p~~i~i~~~--~~~~~~i~q~~~~~~~ 452 (789)
.+.++...+..++..+ .+..|+|++|||+++ ..+++.|+-.. |+.+..+.. ........+.......
T Consensus 150 ~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n-~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~ 228 (737)
T PRK02362 150 DSANRGPTLEVTLAKLRRLNPDLQVVALSATIGN-ADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPS 228 (737)
T ss_pred CCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCC-HHHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccCCCcc
Confidence 9988888888776655 477899999999985 35566655322 111111000 0000000000000011
Q ss_pred CcchHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHc------------------------------------CCc
Q 003887 453 DAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK------------------------------------GFK 496 (789)
Q Consensus 453 ~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~------------------------------------g~~ 496 (789)
.......+.+.+. ..+++||||+++..|+.++..|... ...
T Consensus 229 ~~~~~~~~~~~~~---~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~g 305 (737)
T PRK02362 229 KDDTLNLVLDTLE---EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKG 305 (737)
T ss_pred chHHHHHHHHHHH---cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhC
Confidence 1122233333332 4679999999999999998888643 135
Q ss_pred eeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEE----Ec-----CCCCHHHHHHHHhhcCCCCC-
Q 003887 497 AAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN----FD-----IARDMDMHVHRIGRTGRAGD- 566 (789)
Q Consensus 497 v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~----~d-----~p~s~~~y~QriGR~gR~G~- 566 (789)
++.+|++|++.+|..+++.|++|.++|||||+++++|+|+|.+++||+ || .|.+..+|+||+||+||.|.
T Consensus 306 va~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d 385 (737)
T PRK02362 306 AAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLD 385 (737)
T ss_pred EEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCC
Confidence 889999999999999999999999999999999999999999999997 77 58899999999999999993
Q ss_pred CCeEEEEEEcccc
Q 003887 567 KDGTAYTLVTQKE 579 (789)
Q Consensus 567 ~~G~~i~l~~~~d 579 (789)
..|.|++++...+
T Consensus 386 ~~G~~ii~~~~~~ 398 (737)
T PRK02362 386 PYGEAVLLAKSYD 398 (737)
T ss_pred CCceEEEEecCch
Confidence 3599998886643
No 43
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=8.4e-42 Score=417.72 Aligned_cols=402 Identities=18% Similarity=0.226 Sum_probs=298.8
Q ss_pred ChhccCCCHHHHHHHHHHcCccccc--CCCC-----CCCCCcccCCCCHHHH-HHHHHcCCCCCcHHHHHHHHHHHcC--
Q 003887 193 SASISGMSEQDVMEYKKSLAIRVSG--FDVP-----RPVKTFEDCGFSTQLM-HAISKQGYEKPTSIQCQALPIILSG-- 262 (789)
Q Consensus 193 ~~~i~~~s~~~~~~~r~~~~i~v~~--~~~P-----~pi~sf~~~~l~~~l~-~~l~~~g~~~ptpiQ~~ai~~il~g-- 262 (789)
.+.+.++....|...|++..-.+.. ..+- +....=..+..+..++ +.....+| .||++|.++|+.++.+
T Consensus 539 ~~~l~~lg~~~w~~~k~~~~~~~~~~a~~l~~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~ 617 (1147)
T PRK10689 539 NAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMC 617 (1147)
T ss_pred CCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhh
Confidence 4567888888999887655322210 0000 0000000112233444 44556677 7999999999999987
Q ss_pred ----CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCCh
Q 003887 263 ----RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSK 338 (789)
Q Consensus 263 ----rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~ 338 (789)
+|+|++++||+|||.+|+.+++..+ ..++++||||||++||.|+++.+++++...++++.+++++.+.
T Consensus 618 ~~~~~d~Ll~a~TGsGKT~val~aa~~~~--------~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~ 689 (1147)
T PRK10689 618 QPLAMDRLVCGDVGFGKTEVAMRAAFLAV--------ENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSA 689 (1147)
T ss_pred cCCCCCEEEEcCCCcCHHHHHHHHHHHHH--------HcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCH
Confidence 8999999999999999998887765 2467899999999999999999999877778898889888887
Q ss_pred HHHHHHH---h-cCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEeccCc
Q 003887 339 LDQFKEL---K-AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (789)
Q Consensus 339 ~~~~~~l---~-~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~ 414 (789)
.++...+ . ..++|||+||+.|. ..+.+.++++|||||+|++ ++ .....+..++.++|+++||||+.
T Consensus 690 ~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahrf---G~--~~~e~lk~l~~~~qvLl~SATpi 759 (1147)
T PRK10689 690 KEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHRF---GV--RHKERIKAMRADVDILTLTATPI 759 (1147)
T ss_pred HHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhhc---ch--hHHHHHHhcCCCCcEEEEcCCCC
Confidence 6665433 3 35899999996442 3456788999999999995 32 23455677788999999999988
Q ss_pred HHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHc-
Q 003887 415 RKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK- 493 (789)
Q Consensus 415 ~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~- 493 (789)
+....++...+.++..+...... ...+.+.+........+ ..+ +.++...++++|||+++..++.+++.|.+.
T Consensus 760 prtl~l~~~gl~d~~~I~~~p~~--r~~v~~~~~~~~~~~~k-~~i---l~el~r~gqv~vf~n~i~~ie~la~~L~~~~ 833 (1147)
T PRK10689 760 PRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDSLVVR-EAI---LREILRGGQVYYLYNDVENIQKAAERLAELV 833 (1147)
T ss_pred HHHHHHHHhhCCCcEEEecCCCC--CCCceEEEEecCcHHHH-HHH---HHHHhcCCeEEEEECCHHHHHHHHHHHHHhC
Confidence 88778888888888776543221 23344443332111112 222 222334679999999999999999999987
Q ss_pred -CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEcCC-CCHHHHHHHHhhcCCCCCCCeEE
Q 003887 494 -GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIA-RDMDMHVHRIGRTGRAGDKDGTA 571 (789)
Q Consensus 494 -g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p-~s~~~y~QriGR~gR~G~~~G~~ 571 (789)
++.+.++||+|++.+|.+++..|++|+++|||||+++++|||||++++||+.+.. .+...|+||+||+||.| +.|.|
T Consensus 834 p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g-~~g~a 912 (1147)
T PRK10689 834 PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSH-HQAYA 912 (1147)
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCC-CceEE
Confidence 7899999999999999999999999999999999999999999999999966553 35678999999999999 68999
Q ss_pred EEEEcccc--HHHHHHHHHHHHHcCC---CccHHHHHHHHhcCcccccccccCCCCCCCCCCCCC
Q 003887 572 YTLVTQKE--ARFAGELVNSLIAAGQ---NVSMELMDLAMKDGRFRSKRDARKGGGKKGKGRGGA 631 (789)
Q Consensus 572 i~l~~~~d--~~~~~~l~~~L~~~~~---~vp~~l~~~a~~~~~~~~~~~~r~~g~~~g~g~ggg 631 (789)
|+++.... ...+...++.+++... .+..++.|+.. |+.|...|..+.|.
T Consensus 913 ~ll~~~~~~~~~~~~~rl~~~~~~~~lg~gf~~a~~dl~~-----------rg~g~~~g~~q~g~ 966 (1147)
T PRK10689 913 WLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEI-----------RGAGELLGEEQSGQ 966 (1147)
T ss_pred EEEeCCCcccCHHHHHHHHHHHHhcCCcchHHHHHHHHHh-----------cCCccCCCCccCCC
Confidence 98875532 3445556666666655 88778888877 66777777666554
No 44
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1.6e-42 Score=404.40 Aligned_cols=315 Identities=21% Similarity=0.292 Sum_probs=249.8
Q ss_pred cCCCCCcHHHHHHHHHHHcCC-CEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEE-EcCcHHHHHHHHHHHHH
Q 003887 243 QGYEKPTSIQCQALPIILSGR-DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI-CAPTRELAHQIYLETKK 320 (789)
Q Consensus 243 ~g~~~ptpiQ~~ai~~il~gr-dvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLI-l~PTreLa~Qi~~~~~k 320 (789)
.||. |||||.++++.++.|+ ++++++|||||||.++.++++... . ....|+.|| ++|||+||.|+++.+.+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~-~-----~~~~~~rLv~~vPtReLa~Qi~~~~~~ 84 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVE-I-----GAKVPRRLVYVVNRRTVVDQVTEEAEK 84 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccc-c-----cccccceEEEeCchHHHHHHHHHHHHH
Confidence 4887 9999999999999998 577789999999997665554221 1 123455665 77999999999999999
Q ss_pred Hhhhc-----------------------CcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccc---------
Q 003887 321 FAKSH-----------------------GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL--------- 368 (789)
Q Consensus 321 ~~~~~-----------------------~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~--------- 368 (789)
+++.+ .+++.+++||.+...++..+..+++|||+|+ +++.+..+
T Consensus 85 ~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg~~~~ 160 (844)
T TIGR02621 85 IGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYGCGFK 160 (844)
T ss_pred HHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCccccccccccc
Confidence 98755 4889999999999999999999999999995 55555444
Q ss_pred -------cccceeEEEEcccchhccCCChHHHHHHHhhc--CCC---ceEEEEeccCcHHHHHHHHHHhCCCeEEeeccc
Q 003887 369 -------TMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI--RPD---RQTLLFSATMPRKVEKLAREILSDPVRVTVGEV 436 (789)
Q Consensus 369 -------~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~--~~~---~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~ 436 (789)
.|.++++||||||| ++++|...+..|+..+ ++. +|+++||||++..+..++..++.++..+.+...
T Consensus 161 ~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~ 238 (844)
T TIGR02621 161 SRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKK 238 (844)
T ss_pred cccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccc
Confidence 26889999999999 7899999999999975 332 699999999999888888888888876666544
Q ss_pred cCccccceEEEEecCCCcchHHHHHHhcCC--CCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHH----
Q 003887 437 GMANEDITQVVHVIPSDAEKLPWLLEKLPG--MIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRM---- 510 (789)
Q Consensus 437 ~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~--~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~---- 510 (789)
......+.+.+ .+ ....|...++..+.. ....+++|||||++..|+.|++.|...++ ..|||+|++.+|.
T Consensus 239 ~l~a~ki~q~v-~v-~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~ 314 (844)
T TIGR02621 239 RLAAKKIVKLV-PP-SDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVK 314 (844)
T ss_pred cccccceEEEE-ec-ChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHH
Confidence 44444555532 22 223344333333211 12356899999999999999999998876 8999999999999
Q ss_pred -HHHHHhhc----CC-------ccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEcc
Q 003887 511 -EILQKFKS----GV-------YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (789)
Q Consensus 511 -~~l~~F~~----G~-------~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~ 577 (789)
.+++.|++ |. ..|||||+++++||||+. ++||++..| .+.|+||+||+||.|.+.+.++++++.
T Consensus 315 ~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 315 KEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred HHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 88999987 44 689999999999999986 899988776 689999999999999544555666644
No 45
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=4.5e-42 Score=403.50 Aligned_cols=326 Identities=21% Similarity=0.365 Sum_probs=261.5
Q ss_pred HHHH-cCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHH
Q 003887 239 AISK-QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLE 317 (789)
Q Consensus 239 ~l~~-~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~ 317 (789)
.|++ .||..++|+|.++|+.++.|+|+++++|||+|||++|++|++.+ ...+|||+|+++|+.|++..
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~-----------~g~~lVisPl~sL~~dq~~~ 72 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL-----------KGLTVVISPLISLMKDQVDQ 72 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc-----------CCcEEEEcCCHHHHHHHHHH
Confidence 3443 69999999999999999999999999999999999999998743 23589999999999999888
Q ss_pred HHHHhhhcCcEEEEEEcCCChHHHHH---HHh-cCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCC--ChH
Q 003887 318 TKKFAKSHGIRVSAVYGGMSKLDQFK---ELK-AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG--FEP 391 (789)
Q Consensus 318 ~~k~~~~~~i~v~~~~gg~~~~~~~~---~l~-~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~--f~~ 391 (789)
++.+ ++.+..+.++....+... .+. ...+|+++||++|........+...++++|||||||++.+|+ |.+
T Consensus 73 l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp 148 (591)
T TIGR01389 73 LRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRP 148 (591)
T ss_pred HHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHH
Confidence 8775 788888888877654432 222 358999999999975443444556789999999999999987 666
Q ss_pred HHHHH---HhhcCCCceEEEEeccCcHHHHHHHHHHhC--CCeEEeeccccCccccceEEEEecCCCcchHHHHHHhcCC
Q 003887 392 QIRSI---VGQIRPDRQTLLFSATMPRKVEKLAREILS--DPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPG 466 (789)
Q Consensus 392 ~i~~i---l~~~~~~~q~ll~SATl~~~v~~l~~~~l~--~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~ 466 (789)
.+..+ ...+ +..+++++|||+++.+...+...+. ++..+ +. .....++.. ... ....+...+.+.+..
T Consensus 149 ~y~~l~~l~~~~-~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~-~~--~~~r~nl~~--~v~-~~~~~~~~l~~~l~~ 221 (591)
T TIGR01389 149 EYQRLGSLAERF-PQVPRIALTATADAETRQDIRELLRLADANEF-IT--SFDRPNLRF--SVV-KKNNKQKFLLDYLKK 221 (591)
T ss_pred HHHHHHHHHHhC-CCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeE-ec--CCCCCCcEE--EEE-eCCCHHHHHHHHHHh
Confidence 55544 3333 3455999999999888766666554 33222 11 112222222 222 234566677777765
Q ss_pred CCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEc
Q 003887 467 MIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFD 546 (789)
Q Consensus 467 ~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d 546 (789)
.. ..++||||+++..++.++..|...++.+..+||+|+..+|..+++.|.+|.++|||||+++++|||+|+|++||+|+
T Consensus 222 ~~-~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~ 300 (591)
T TIGR01389 222 HR-GQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYD 300 (591)
T ss_pred cC-CCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcC
Confidence 32 56899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHH
Q 003887 547 IARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVN 588 (789)
Q Consensus 547 ~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~ 588 (789)
+|.+++.|+|++||+||.| +.+.|++|+++.|...+..++.
T Consensus 301 ~p~s~~~y~Q~~GRaGR~G-~~~~~il~~~~~d~~~~~~~i~ 341 (591)
T TIGR01389 301 MPGNLESYYQEAGRAGRDG-LPAEAILLYSPADIALLKRRIE 341 (591)
T ss_pred CCCCHHHHhhhhccccCCC-CCceEEEecCHHHHHHHHHHHh
Confidence 9999999999999999999 7899999999988876665543
No 46
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=4.1e-42 Score=411.54 Aligned_cols=339 Identities=22% Similarity=0.307 Sum_probs=266.6
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEE
Q 003887 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPI-ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (789)
Q Consensus 226 sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~-il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl 304 (789)
+|+++++++.+.+.|++.||.+|+|+|.++++. +++++|+++++|||||||++|.+|++.+++.. +.++|||
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~-------~~~~l~l 74 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE-------GGKAVYL 74 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc-------CCeEEEE
Confidence 577889999999999999999999999999985 88999999999999999999999999987542 5689999
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchh
Q 003887 305 APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM 384 (789)
Q Consensus 305 ~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m 384 (789)
+|+++||.|+++.++++. ..++++..++|+...... +...++|+|+||+++..++......+.++++|||||+|.+
T Consensus 75 ~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l 150 (720)
T PRK00254 75 VPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLI 150 (720)
T ss_pred eChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCcc
Confidence 999999999999998874 468999999998765432 2346899999999999988876667899999999999999
Q ss_pred ccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCC-cch-----HH
Q 003887 385 FDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSD-AEK-----LP 458 (789)
Q Consensus 385 ~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~-~~k-----~~ 458 (789)
.+.++...+..++.++....|+|++|||+++ ...++.++..................+.+.+...... ..+ ..
T Consensus 151 ~~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~wl~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (720)
T PRK00254 151 GSYDRGATLEMILTHMLGRAQILGLSATVGN-AEELAEWLNAELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWES 229 (720)
T ss_pred CCccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHHHhCCccccCCCCCCcceeeEecCCeeeccCcchhcchHHHHH
Confidence 9999999999999999989999999999986 4667765543221111111110000011111111111 011 12
Q ss_pred HHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHc---------------------------------CCceeeccCCCC
Q 003887 459 WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK---------------------------------GFKAAALHGDKD 505 (789)
Q Consensus 459 ~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~---------------------------------g~~v~~lhg~~~ 505 (789)
.+.+.+. ..+++||||+++..|+.++..|... ...+..+|++|+
T Consensus 230 ~~~~~i~---~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~ 306 (720)
T PRK00254 230 LVYDAVK---KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLG 306 (720)
T ss_pred HHHHHHH---hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCC
Confidence 2233332 3569999999999998877666421 235899999999
Q ss_pred HHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEE-------EcCCC-CHHHHHHHHhhcCCCC-CCCeEEEEEEc
Q 003887 506 QASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN-------FDIAR-DMDMHVHRIGRTGRAG-DKDGTAYTLVT 576 (789)
Q Consensus 506 ~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~-------~d~p~-s~~~y~QriGR~gR~G-~~~G~~i~l~~ 576 (789)
+.+|..+++.|++|.++|||||+++++|+|+|.+++||. ++.|. ...+|+||+||+||.| ...|.+++++.
T Consensus 307 ~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~ 386 (720)
T PRK00254 307 RTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVAT 386 (720)
T ss_pred HHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEec
Confidence 999999999999999999999999999999999999994 45444 4679999999999987 45699999987
Q ss_pred ccc
Q 003887 577 QKE 579 (789)
Q Consensus 577 ~~d 579 (789)
..+
T Consensus 387 ~~~ 389 (720)
T PRK00254 387 TEE 389 (720)
T ss_pred Ccc
Confidence 655
No 47
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=3.4e-41 Score=399.32 Aligned_cols=347 Identities=22% Similarity=0.294 Sum_probs=265.7
Q ss_pred HHHHHHH-HHcCCCCCcHHHHHHHHHHHcC------CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcC
Q 003887 234 TQLMHAI-SKQGYEKPTSIQCQALPIILSG------RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP 306 (789)
Q Consensus 234 ~~l~~~l-~~~g~~~ptpiQ~~ai~~il~g------rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~P 306 (789)
..+.+.+ ...+| +||++|.++++.|+.+ .++|++++||||||++|++|++..+ ..+.++|||+|
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~--------~~g~q~lilaP 318 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAI--------EAGYQAALMAP 318 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHH--------HcCCeEEEEec
Confidence 3444444 44566 6999999999999877 4899999999999999999999887 24778999999
Q ss_pred cHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHH---HHHHHhcC-CcEEEeCHHHHHHHHhhccccccceeEEEEcccc
Q 003887 307 TRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD---QFKELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD 382 (789)
Q Consensus 307 TreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~---~~~~l~~~-~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah 382 (789)
|++||.|+++.+++++...++++.+++|+.+..+ ++..+..+ ++|||+||+.|.+ ...+.++++|||||+|
T Consensus 319 T~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~H 393 (681)
T PRK10917 319 TEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQH 393 (681)
T ss_pred cHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechh
Confidence 9999999999999999988999999999988543 44455554 9999999988754 3457889999999999
Q ss_pred hhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHHHH
Q 003887 383 RMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462 (789)
Q Consensus 383 ~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~ 462 (789)
++ ....+..+......+++|+||||+.+....+ .++.+.....+...+.....+.+.+... .+...+++
T Consensus 394 rf-----g~~qr~~l~~~~~~~~iL~~SATp~prtl~~--~~~g~~~~s~i~~~p~~r~~i~~~~~~~----~~~~~~~~ 462 (681)
T PRK10917 394 RF-----GVEQRLALREKGENPHVLVMTATPIPRTLAM--TAYGDLDVSVIDELPPGRKPITTVVIPD----SRRDEVYE 462 (681)
T ss_pred hh-----hHHHHHHHHhcCCCCCEEEEeCCCCHHHHHH--HHcCCCceEEEecCCCCCCCcEEEEeCc----ccHHHHHH
Confidence 94 3334444555555789999999986654333 3344433333333333334454443322 22233333
Q ss_pred hcCCC-CCCCcEEEEecccc--------cHHHHHHHHHHc--CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhh
Q 003887 463 KLPGM-IDDGDVLVFASKKT--------TVDEIESQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAA 531 (789)
Q Consensus 463 ~L~~~-~~~~kvLVF~~s~~--------~a~~l~~~L~~~--g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~ 531 (789)
.+... ....+++|||+..+ .+..+++.|... ++.+..+||+|++.+|..+++.|++|+++|||||++++
T Consensus 463 ~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie 542 (681)
T PRK10917 463 RIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIE 542 (681)
T ss_pred HHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECccee
Confidence 33322 24569999999654 345667777765 47899999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEEcCCCC-HHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 003887 532 RGLDIKSIKSVVNFDIARD-MDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAM 606 (789)
Q Consensus 532 ~GlDI~~v~~VI~~d~p~s-~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~L~~~~~~vp~~l~~~a~ 606 (789)
+|+|+|++++||++++|.. ...|.||+||+||.| +.|.|++++.........+.++.|+++.+.+.....|+..
T Consensus 543 ~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g-~~g~~ill~~~~~~~~~~~rl~~~~~~~dgf~iae~dl~~ 617 (681)
T PRK10917 543 VGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGA-AQSYCVLLYKDPLSETARERLKIMRETNDGFVIAEKDLEL 617 (681)
T ss_pred eCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCC-CceEEEEEECCCCChhHHHHHHHHHHhcchHHHHHHhHhh
Confidence 9999999999999999974 677788999999998 6799999996544445667778898888888777777776
No 48
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=6.6e-41 Score=394.42 Aligned_cols=360 Identities=19% Similarity=0.260 Sum_probs=267.6
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHcC------CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcH
Q 003887 235 QLMHAISKQGYEKPTSIQCQALPIILSG------RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTR 308 (789)
Q Consensus 235 ~l~~~l~~~g~~~ptpiQ~~ai~~il~g------rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTr 308 (789)
.+.+.+...+| +||++|.++|+.|+++ .+.|++++||||||++|++|++..+. .+.++|||+||+
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~--------~g~qvlilaPT~ 294 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE--------AGYQVALMAPTE 294 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH--------cCCcEEEECCHH
Confidence 34556677788 7999999999999876 36899999999999999999998873 367899999999
Q ss_pred HHHHHHHHHHHHHhhhcCcEEEEEEcCCChHH---HHHHHhc-CCcEEEeCHHHHHHHHhhccccccceeEEEEcccchh
Q 003887 309 ELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD---QFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM 384 (789)
Q Consensus 309 eLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~---~~~~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m 384 (789)
+||.|+++.+++++...++++.+++|+..... .+..+.. .++|||+||+.|.+ ...+.++++|||||+|++
T Consensus 295 ~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~f 369 (630)
T TIGR00643 295 ILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRF 369 (630)
T ss_pred HHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhc
Confidence 99999999999999888999999999987654 3444444 47999999988754 345788999999999984
Q ss_pred ccCCChHHHHHHHhhcC--CCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHHHH
Q 003887 385 FDLGFEPQIRSIVGQIR--PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462 (789)
Q Consensus 385 ~~~~f~~~i~~il~~~~--~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~ 462 (789)
.. .+...++.... ..+|+++||||+.+.... ...+.+.....+.........+...+... .....++.
T Consensus 370 g~----~qr~~l~~~~~~~~~~~~l~~SATp~prtl~--l~~~~~l~~~~i~~~p~~r~~i~~~~~~~----~~~~~~~~ 439 (630)
T TIGR00643 370 GV----EQRKKLREKGQGGFTPHVLVMSATPIPRTLA--LTVYGDLDTSIIDELPPGRKPITTVLIKH----DEKDIVYE 439 (630)
T ss_pred cH----HHHHHHHHhcccCCCCCEEEEeCCCCcHHHH--HHhcCCcceeeeccCCCCCCceEEEEeCc----chHHHHHH
Confidence 31 12222333222 267899999997654332 23333322222222222223344333221 12234444
Q ss_pred hcCCC-CCCCcEEEEecccc--------cHHHHHHHHHHc--CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhh
Q 003887 463 KLPGM-IDDGDVLVFASKKT--------TVDEIESQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAA 531 (789)
Q Consensus 463 ~L~~~-~~~~kvLVF~~s~~--------~a~~l~~~L~~~--g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~ 531 (789)
.+.+. ....+++|||+..+ .+..+++.|.+. ++.+..+||+|++.+|..+++.|++|+.+|||||++++
T Consensus 440 ~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie 519 (630)
T TIGR00643 440 FIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIE 519 (630)
T ss_pred HHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceee
Confidence 44332 24568999999864 455677777653 67899999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEEcCCC-CHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHHHHHHcCCCccHHHHHHHHhcCc
Q 003887 532 RGLDIKSIKSVVNFDIAR-DMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGR 610 (789)
Q Consensus 532 ~GlDI~~v~~VI~~d~p~-s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~L~~~~~~vp~~l~~~a~~~~~ 610 (789)
+|+|+|++++||+++.|. +...|.||+||+||.| +.|.|++++.........+.++.|....+.+.....|+..
T Consensus 520 ~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g-~~g~~il~~~~~~~~~~~~rl~~~~~~~dgf~iae~dl~~---- 594 (630)
T TIGR00643 520 VGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGD-HQSYCLLVYKNPKSESAKKRLRVMADTLDGFVIAEEDLEL---- 594 (630)
T ss_pred cCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCC-CCcEEEEEECCCCCHHHHHHHHHHHhhcccHHHHHHHHhc----
Confidence 999999999999999997 5777888999999998 6899999984444445556678888888888777777776
Q ss_pred ccccccccCCCCCCCCCCCC
Q 003887 611 FRSKRDARKGGGKKGKGRGG 630 (789)
Q Consensus 611 ~~~~~~~r~~g~~~g~g~gg 630 (789)
|+.|...|..+.|
T Consensus 595 -------Rg~g~~~g~~QsG 607 (630)
T TIGR00643 595 -------RGPGDLLGTKQSG 607 (630)
T ss_pred -------CCCcccCCCcccC
Confidence 4555555544443
No 49
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-43 Score=345.13 Aligned_cols=333 Identities=29% Similarity=0.502 Sum_probs=282.9
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEE
Q 003887 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (789)
Q Consensus 225 ~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl 304 (789)
+-|.++-|+++|+++|...||.+|+.+|.+|||...-|.|++++|..|.|||.+|++..|+.+--- .....+|++
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv-----~g~vsvlvm 116 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPV-----DGQVSVLVM 116 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCC-----CCeEEEEEE
Confidence 457788899999999999999999999999999999999999999999999999999998876221 123468999
Q ss_pred cCcHHHHHHHHHHHHHHhhhc-CcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccch
Q 003887 305 APTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (789)
Q Consensus 305 ~PTreLa~Qi~~~~~k~~~~~-~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~ 383 (789)
|.||+||.||.++..+|.+.. ++++.+++||.........+++.++|+|+||++++-+++++.++|.+++..||||||.
T Consensus 117 chtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdk 196 (387)
T KOG0329|consen 117 CHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDK 196 (387)
T ss_pred eccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHH
Confidence 999999999999999998754 6899999999998888788888899999999999999999999999999999999998
Q ss_pred hcc-CCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccc-cCccccceEEEEecCCCcchHHHHH
Q 003887 384 MFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEV-GMANEDITQVVHVIPSDAEKLPWLL 461 (789)
Q Consensus 384 m~~-~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~-~~~~~~i~q~~~~~~~~~~k~~~L~ 461 (789)
|+. .+....+..|+...+.+.|+++||||++++++..+++|+.+|..+.+... ......+.|.+..+. +..|...|.
T Consensus 197 mle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLk-e~eKNrkl~ 275 (387)
T KOG0329|consen 197 MLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLK-ENEKNRKLN 275 (387)
T ss_pred HHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhh-hhhhhhhhh
Confidence 875 35677888999999999999999999999999999999999998887654 345566667666653 455666666
Q ss_pred HhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccE
Q 003887 462 EKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKS 541 (789)
Q Consensus 462 ~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~ 541 (789)
++|..+ .-.+++||+.+... +. | ..+ ||||++.+||+||..++.
T Consensus 276 dLLd~L-eFNQVvIFvKsv~R------------------------------l~-f---~kr-~vat~lfgrgmdiervNi 319 (387)
T KOG0329|consen 276 DLLDVL-EFNQVVIFVKSVQR------------------------------LS-F---QKR-LVATDLFGRGMDIERVNI 319 (387)
T ss_pred hhhhhh-hhcceeEeeehhhh------------------------------hh-h---hhh-hHHhhhhccccCccccee
Confidence 666533 45799999988644 01 3 223 999999999999999999
Q ss_pred EEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccc-cHHHHHHHHHHHHHcCCCccHH
Q 003887 542 VVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK-EARFAGELVNSLIAAGQNVSME 600 (789)
Q Consensus 542 VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~-d~~~~~~l~~~L~~~~~~vp~~ 600 (789)
|||||+|.+.+.|+||++|+||.| .+|.+++|++.. |...+..+....+.....+|.+
T Consensus 320 ~~NYdmp~~~DtYlHrv~rAgrfG-tkglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 320 VFNYDMPEDSDTYLHRVARAGRFG-TKGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred eeccCCCCCchHHHHHhhhhhccc-cccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 999999999999999999999999 679999999864 6667777766666666666665
No 50
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=2.8e-40 Score=393.92 Aligned_cols=333 Identities=21% Similarity=0.306 Sum_probs=255.8
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEc
Q 003887 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305 (789)
Q Consensus 226 sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~ 305 (789)
.|++++|++.+++.+.+.+|. |+|+|.++++.+++++++++++|||||||+++.++++.++.. +.++|||+
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~--------~~k~v~i~ 72 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA--------GLKSIYIV 72 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh--------CCcEEEEe
Confidence 477889999999999999986 999999999999999999999999999999999999988743 45799999
Q ss_pred CcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhc
Q 003887 306 PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (789)
Q Consensus 306 PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~ 385 (789)
|+++||.|++++++++. ..++++...+|+...... ....++|+|+||+++..++.+....+.++++|||||||++.
T Consensus 73 P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~ 148 (674)
T PRK01172 73 PLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIG 148 (674)
T ss_pred chHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhcc
Confidence 99999999999999864 468888888887654332 23468999999999999888776678999999999999999
Q ss_pred cCCChHHHHHHHhh---cCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEE-----EecCCCcchH
Q 003887 386 DLGFEPQIRSIVGQ---IRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVV-----HVIPSDAEKL 457 (789)
Q Consensus 386 ~~~f~~~i~~il~~---~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~-----~~~~~~~~k~ 457 (789)
+.++...+..++.. ++++.|+|++|||+++ ..+++.|+-......... ...+...+ ..+.......
T Consensus 149 d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~wl~~~~~~~~~r-----~vpl~~~i~~~~~~~~~~~~~~~ 222 (674)
T PRK01172 149 DEDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQWLNASLIKSNFR-----PVPLKLGILYRKRLILDGYERSQ 222 (674)
T ss_pred CCCccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHHHhCCCccCCCCC-----CCCeEEEEEecCeeeeccccccc
Confidence 88888777776654 4578899999999975 466776653322111110 00111100 0111111011
Q ss_pred HHHHHhcCC-CCCCCcEEEEecccccHHHHHHHHHHc-------------------------CCceeeccCCCCHHHHHH
Q 003887 458 PWLLEKLPG-MIDDGDVLVFASKKTTVDEIESQLAQK-------------------------GFKAAALHGDKDQASRME 511 (789)
Q Consensus 458 ~~L~~~L~~-~~~~~kvLVF~~s~~~a~~l~~~L~~~-------------------------g~~v~~lhg~~~~~eR~~ 511 (789)
..+...+.+ ....+++||||+++..|+.++..|... ...+..+|++|++.+|..
T Consensus 223 ~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ 302 (674)
T PRK01172 223 VDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRF 302 (674)
T ss_pred ccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHH
Confidence 112222222 124679999999999999999988653 124788999999999999
Q ss_pred HHHHhhcCCccEEEeehhhhccCCCCCccEEEEEcC---------CCCHHHHHHHHhhcCCCC-CCCeEEEEEEccc
Q 003887 512 ILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDI---------ARDMDMHVHRIGRTGRAG-DKDGTAYTLVTQK 578 (789)
Q Consensus 512 ~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~---------p~s~~~y~QriGR~gR~G-~~~G~~i~l~~~~ 578 (789)
+++.|++|.++|||||+++++|+|+|+. .||+++. |.++.+|.||+||+||.| ...|.+++++...
T Consensus 303 ve~~f~~g~i~VLvaT~~la~Gvnipa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 303 IEEMFRNRYIKVIVATPTLAAGVNLPAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred HHHHHHcCCCeEEEecchhhccCCCcce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCc
Confidence 9999999999999999999999999985 5555443 457889999999999998 3457788776544
No 51
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=2.7e-38 Score=387.66 Aligned_cols=302 Identities=24% Similarity=0.315 Sum_probs=245.6
Q ss_pred HHHHc-CCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHH
Q 003887 239 AISKQ-GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLE 317 (789)
Q Consensus 239 ~l~~~-g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~ 317 (789)
.+++. |+ .||++|.+++|.++.|+|++++||||+|||+ |+++++.++.. .++++|||+|||+||.|+++.
T Consensus 72 ~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~-------~g~~alIL~PTreLa~Qi~~~ 142 (1176)
T PRK09401 72 FFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK-------KGKKSYIIFPTRLLVEQVVEK 142 (1176)
T ss_pred HHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeccHHHHHHHHHH
Confidence 34333 66 8999999999999999999999999999996 56666555422 378899999999999999999
Q ss_pred HHHHhhhcCcEEEEEEcCCC-----hHHHHHHHhc-CCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhcc-----
Q 003887 318 TKKFAKSHGIRVSAVYGGMS-----KLDQFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD----- 386 (789)
Q Consensus 318 ~~k~~~~~~i~v~~~~gg~~-----~~~~~~~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~----- 386 (789)
+++++...++.+..++|+.. ...+...+.. .++|+|+||++|.+.+. .+.+..+++|||||||+|++
T Consensus 143 l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~i 220 (1176)
T PRK09401 143 LEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNI 220 (1176)
T ss_pred HHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccch
Confidence 99999888888888877654 2233444554 58999999999999876 45566799999999999986
Q ss_pred ------CCCh-HHHHHHHhhcCC------------------------CceEEEEeccCcHH-HHHHHHHHhCCCeEEeec
Q 003887 387 ------LGFE-PQIRSIVGQIRP------------------------DRQTLLFSATMPRK-VEKLAREILSDPVRVTVG 434 (789)
Q Consensus 387 ------~~f~-~~i~~il~~~~~------------------------~~q~ll~SATl~~~-v~~l~~~~l~~p~~i~i~ 434 (789)
+||. ..+..++..++. .+|+++||||+++. +.. .++.++..+.++
T Consensus 221 d~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~ 297 (1176)
T PRK09401 221 DKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVG 297 (1176)
T ss_pred hhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEec
Confidence 6785 677777777654 68999999999864 332 334555566666
Q ss_pred cccCccccceEEEEecCCCcchHHHHHHhcCCCCCCCcEEEEeccccc---HHHHHHHHHHcCCceeeccCCCCHHHHHH
Q 003887 435 EVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTT---VDEIESQLAQKGFKAAALHGDKDQASRME 511 (789)
Q Consensus 435 ~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~---a~~l~~~L~~~g~~v~~lhg~~~~~eR~~ 511 (789)
.......+|.+.+..+. .+...|.+++... ..++||||+++.. ++.|+++|...|+++..+||+| .+
T Consensus 298 ~~~~~~rnI~~~yi~~~---~k~~~L~~ll~~l--~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~ 367 (1176)
T PRK09401 298 SPVFYLRNIVDSYIVDE---DSVEKLVELVKRL--GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ER 367 (1176)
T ss_pred CcccccCCceEEEEEcc---cHHHHHHHHHHhc--CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HH
Confidence 66666677888776554 5666777777654 3589999999888 9999999999999999999999 23
Q ss_pred HHHHhhcCCccEEEe----ehhhhccCCCCC-ccEEEEEcCCC------CHHHHHHHHhhcCCC
Q 003887 512 ILQKFKSGVYHVLIA----TDVAARGLDIKS-IKSVVNFDIAR------DMDMHVHRIGRTGRA 564 (789)
Q Consensus 512 ~l~~F~~G~~~VLVa----T~v~~~GlDI~~-v~~VI~~d~p~------s~~~y~QriGR~gR~ 564 (789)
.++.|++|+++|||| |++++||||||+ |++||||++|. ..+.|.||+||+...
T Consensus 368 ~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 368 KFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred HHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 469999999999999 699999999999 89999999998 678899999999754
No 52
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=8e-38 Score=363.27 Aligned_cols=341 Identities=23% Similarity=0.315 Sum_probs=273.0
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHH
Q 003887 231 GFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTREL 310 (789)
Q Consensus 231 ~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreL 310 (789)
-|++.+.+.++.. |..|||.|.+|||.+.+|+|+|++||||||||++++||++..+++........+-.+|+|.|.|+|
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKAL 85 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHH
Confidence 3788899999888 999999999999999999999999999999999999999999988743334457789999999999
Q ss_pred HHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhcc--ccccceeEEEEcccchhccCC
Q 003887 311 AHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKA--LTMSRVTYLVLDEADRMFDLG 388 (789)
Q Consensus 311 a~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~--~~l~~i~~lVlDEah~m~~~~ 388 (789)
...+...+..+....|+.+.+-+|.++..+..+.+++.+||+|+||+.|.-++.... -.|.++.+|||||+|.+.+..
T Consensus 86 n~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 86 NNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccc
Confidence 999999999999999999999999998888878888889999999999988886532 358899999999999998766
Q ss_pred ChHHHHHHHhhc---CCCceEEEEeccCcHHHHHHHHHHhCC--CeEEeeccccCccccceEEEEecC--CC----cchH
Q 003887 389 FEPQIRSIVGQI---RPDRQTLLFSATMPRKVEKLAREILSD--PVRVTVGEVGMANEDITQVVHVIP--SD----AEKL 457 (789)
Q Consensus 389 f~~~i~~il~~~---~~~~q~ll~SATl~~~v~~l~~~~l~~--p~~i~i~~~~~~~~~i~q~~~~~~--~~----~~k~ 457 (789)
.+.++..-+.++ .++.|.|++|||.. +...+++++... +..+... ......++.-..-... .. ....
T Consensus 166 RG~~Lsl~LeRL~~l~~~~qRIGLSATV~-~~~~varfL~g~~~~~~Iv~~-~~~k~~~i~v~~p~~~~~~~~~~~~~~~ 243 (814)
T COG1201 166 RGVQLALSLERLRELAGDFQRIGLSATVG-PPEEVAKFLVGFGDPCEIVDV-SAAKKLEIKVISPVEDLIYDEELWAALY 243 (814)
T ss_pred cchhhhhhHHHHHhhCcccEEEeehhccC-CHHHHHHHhcCCCCceEEEEc-ccCCcceEEEEecCCccccccchhHHHH
Confidence 665555433333 34899999999987 345667766655 3333221 1111112211111110 00 1123
Q ss_pred HHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcC-CceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCC
Q 003887 458 PWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKG-FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDI 536 (789)
Q Consensus 458 ~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g-~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI 536 (789)
..+.+++.+ ...+|||+||+..++.++..|++.+ ..+..+||+++..+|..+.+.|++|+.+++|||+.++-||||
T Consensus 244 ~~i~~~v~~---~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDi 320 (814)
T COG1201 244 ERIAELVKK---HRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDI 320 (814)
T ss_pred HHHHHHHhh---cCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhcccc
Confidence 333444433 3489999999999999999999987 899999999999999999999999999999999999999999
Q ss_pred CCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEcc
Q 003887 537 KSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (789)
Q Consensus 537 ~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~ 577 (789)
-+++.||+|..|.++...+||+||+|+.-......+.+...
T Consensus 321 G~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 321 GDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred CCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 99999999999999999999999999765344555555444
No 53
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=6.8e-38 Score=364.31 Aligned_cols=311 Identities=18% Similarity=0.218 Sum_probs=234.6
Q ss_pred HHHHHHHHHHHcCCCEEEEccCCChhhHH---------HHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHH
Q 003887 250 SIQCQALPIILSGRDIIGIAKTGSGKTAA---------FVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK 320 (789)
Q Consensus 250 piQ~~ai~~il~grdvl~~a~TGsGKTla---------~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k 320 (789)
.+|.++++.+++++++|++|+||||||.+ |++|.+..+.... .....+.++|++|||+||.|+...+.+
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~--~~~~~~~ilvt~PrreLa~qi~~~i~~ 244 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID--PNFIERPIVLSLPRVALVRLHSITLLK 244 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc--cccCCcEEEEECcHHHHHHHHHHHHHH
Confidence 68999999999999999999999999987 3344444432110 012356799999999999999999887
Q ss_pred Hhhh---cCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHH
Q 003887 321 FAKS---HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIV 397 (789)
Q Consensus 321 ~~~~---~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il 397 (789)
.... .++.+.+.+||... .+........+|+|+|++.. ...|.++++|||||||++...+ +.+..++
T Consensus 245 ~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~--DllL~ll 314 (675)
T PHA02653 245 SLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG--DIIIAVA 314 (675)
T ss_pred HhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch--hHHHHHH
Confidence 6543 35677888999873 22222334689999997521 1257889999999999987764 4555666
Q ss_pred hhcC-CCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCC---------CcchHHHHHHhcCCC
Q 003887 398 GQIR-PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPS---------DAEKLPWLLEKLPGM 467 (789)
Q Consensus 398 ~~~~-~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~---------~~~k~~~L~~~L~~~ 467 (789)
..+. ..+|+++||||++.++..+ ..++.+|..+.+.. .....+.+.+..... ...+ ..++..+...
T Consensus 315 k~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~g--rt~~pV~~~yi~~~~~~~~~~~y~~~~k-~~~l~~L~~~ 390 (675)
T PHA02653 315 RKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPG--GTLFPISEVYVKNKYNPKNKRAYIEEEK-KNIVTALKKY 390 (675)
T ss_pred HHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCC--CcCCCeEEEEeecCcccccchhhhHHHH-HHHHHHHHHh
Confidence 5443 3469999999999888776 57888888877642 233455555432211 0111 1223333221
Q ss_pred --CCCCcEEEEecccccHHHHHHHHHHc--CCceeeccCCCCHHHHHHHHHHh-hcCCccEEEeehhhhccCCCCCccEE
Q 003887 468 --IDDGDVLVFASKKTTVDEIESQLAQK--GFKAAALHGDKDQASRMEILQKF-KSGVYHVLIATDVAARGLDIKSIKSV 542 (789)
Q Consensus 468 --~~~~kvLVF~~s~~~a~~l~~~L~~~--g~~v~~lhg~~~~~eR~~~l~~F-~~G~~~VLVaT~v~~~GlDI~~v~~V 542 (789)
...+.+||||+++.+++.+++.|.+. ++.+..|||++++. +++++.| ++|+.+|||||++++|||||++|++|
T Consensus 391 ~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~V 468 (675)
T PHA02653 391 TPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHV 468 (675)
T ss_pred hcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEE
Confidence 13468999999999999999999887 79999999999985 5677787 78999999999999999999999999
Q ss_pred EEEc---CCC---------CHHHHHHHHhhcCCCCCCCeEEEEEEccccH
Q 003887 543 VNFD---IAR---------DMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (789)
Q Consensus 543 I~~d---~p~---------s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~ 580 (789)
|+++ .|. +...|+||+||+||.. +|.|+.|+++.+.
T Consensus 469 ID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~~--~G~c~rLyt~~~~ 516 (675)
T PHA02653 469 YDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRVS--PGTYVYFYDLDLL 516 (675)
T ss_pred EECCCccCCCcccCcccccCHHHHHHhccCcCCCC--CCeEEEEECHHHh
Confidence 9998 555 7889999999999994 7999999998774
No 54
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1.7e-37 Score=381.25 Aligned_cols=303 Identities=21% Similarity=0.280 Sum_probs=226.4
Q ss_pred EEccCCChhhHHHHHHHHHHHhcCccc-----ccCCCCEEEEEcCcHHHHHHHHHHHHHHhh------------hcCcEE
Q 003887 267 GIAKTGSGKTAAFVLPMIVHIMDQPEL-----QKEEGPIGVICAPTRELAHQIYLETKKFAK------------SHGIRV 329 (789)
Q Consensus 267 ~~a~TGsGKTla~llp~l~~l~~~~~~-----~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~------------~~~i~v 329 (789)
+++|||||||++|+||+|..++.++.. ....+.++|||+|+++|+.|+.+.++..+. ..++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999999865311 123468999999999999999998875321 246899
Q ss_pred EEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhc-cccccceeEEEEcccchhccCCChHH----HHHHHhhcCCCc
Q 003887 330 SAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK-ALTMSRVTYLVLDEADRMFDLGFEPQ----IRSIVGQIRPDR 404 (789)
Q Consensus 330 ~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~-~~~l~~i~~lVlDEah~m~~~~f~~~----i~~il~~~~~~~ 404 (789)
...+|+.+..++.+.+.+.++|||+||++|..++.++ ...|+++++|||||+|.|.+..+..+ +..+...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 9999999888877777778999999999999887654 34689999999999999987654444 444445556778
Q ss_pred eEEEEeccCcHHHHHHHHHHhCC-CeEEeeccccCccccceEEEEecCCCc-------------------chHHHH-HHh
Q 003887 405 QTLLFSATMPRKVEKLAREILSD-PVRVTVGEVGMANEDITQVVHVIPSDA-------------------EKLPWL-LEK 463 (789)
Q Consensus 405 q~ll~SATl~~~v~~l~~~~l~~-p~~i~i~~~~~~~~~i~q~~~~~~~~~-------------------~k~~~L-~~~ 463 (789)
|+|++|||+++ .+++++++... |+.+.. ........+. .+..+.... .....+ ..+
T Consensus 161 QrIgLSATI~n-~eevA~~L~g~~pv~Iv~-~~~~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVAAFLGGDRPVTVVN-PPAMRHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCC-HHHHHHHhcCCCCEEEEC-CCCCcccceE-EEEecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 99999999986 46677655443 554432 1111111222 111111100 000111 112
Q ss_pred cCCCCCCCcEEEEecccccHHHHHHHHHHcC---------------------------------CceeeccCCCCHHHHH
Q 003887 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKG---------------------------------FKAAALHGDKDQASRM 510 (789)
Q Consensus 464 L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g---------------------------------~~v~~lhg~~~~~eR~ 510 (789)
+.......++|||||++..|+.++..|++.. +.+..+||+|++.+|.
T Consensus 238 l~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 238 LDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 2222245789999999999999999997631 1256899999999999
Q ss_pred HHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEE
Q 003887 511 EILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAY 572 (789)
Q Consensus 511 ~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i 572 (789)
.+++.|++|++++||||+.+++||||+.+++||+|+.|.++.+|+||+||+||.....+.++
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gl 379 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGL 379 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEE
Confidence 99999999999999999999999999999999999999999999999999999742234444
No 55
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=4.1e-38 Score=328.62 Aligned_cols=278 Identities=34% Similarity=0.511 Sum_probs=230.1
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHHhhhc---CcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeE
Q 003887 299 PIGVICAPTRELAHQIYLETKKFAKSH---GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTY 375 (789)
Q Consensus 299 p~vLIl~PTreLa~Qi~~~~~k~~~~~---~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~ 375 (789)
|.+||+-|.|+|+.|.++.+++|-... .++..+++||.....|...+..+.+|||+||+||.+.+....+.|..+.+
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crF 366 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRF 366 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEE
Confidence 789999999999999999888775543 45777899999999999999999999999999999999999999999999
Q ss_pred EEEcccchhccCCChHHHHHHHhhcCC------CceEEEEeccCcH-HHHHHHHHHhCCCeEEeeccccCccccceEEEE
Q 003887 376 LVLDEADRMFDLGFEPQIRSIVGQIRP------DRQTLLFSATMPR-KVEKLAREILSDPVRVTVGEVGMANEDITQVVH 448 (789)
Q Consensus 376 lVlDEah~m~~~~f~~~i~~il~~~~~------~~q~ll~SATl~~-~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~ 448 (789)
+|+|||+.++..++.+.|..+...++. ..|.++.|||+.. ++..+...++.-|..+.........+.+.+.+.
T Consensus 367 lvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~ 446 (725)
T KOG0349|consen 367 LVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVK 446 (725)
T ss_pred EEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhcccee
Confidence 999999999999999999998888763 4689999999742 455667778888888877666555555544443
Q ss_pred ecCCC-cchHHHH----------------------------HHhcCCC--------CCCCcEEEEecccccHHHHHHHHH
Q 003887 449 VIPSD-AEKLPWL----------------------------LEKLPGM--------IDDGDVLVFASKKTTVDEIESQLA 491 (789)
Q Consensus 449 ~~~~~-~~k~~~L----------------------------~~~L~~~--------~~~~kvLVF~~s~~~a~~l~~~L~ 491 (789)
.+... ...+..| ..+|+.. ..-.+.||||.++.+|+.|..+|.
T Consensus 447 lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~ 526 (725)
T KOG0349|consen 447 LVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMN 526 (725)
T ss_pred ecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHH
Confidence 33211 1111111 1111110 012489999999999999999999
Q ss_pred HcC---CceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCC
Q 003887 492 QKG---FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKD 568 (789)
Q Consensus 492 ~~g---~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~ 568 (789)
+++ +.|+++||+..+.+|...++.|+.+.+++||||++++|||||.++-.|||.-+|..-..|+|||||+||+. +-
T Consensus 527 qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgrae-rm 605 (725)
T KOG0349|consen 527 QKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAE-RM 605 (725)
T ss_pred HcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhh-hc
Confidence 864 78999999999999999999999999999999999999999999999999999999999999999999997 67
Q ss_pred eEEEEEEcc
Q 003887 569 GTAYTLVTQ 577 (789)
Q Consensus 569 G~~i~l~~~ 577 (789)
|.+|.|+..
T Consensus 606 glaislvat 614 (725)
T KOG0349|consen 606 GLAISLVAT 614 (725)
T ss_pred ceeEEEeec
Confidence 999998754
No 56
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=6.6e-37 Score=382.46 Aligned_cols=328 Identities=21% Similarity=0.259 Sum_probs=252.8
Q ss_pred HHHHHHH-cCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHH
Q 003887 236 LMHAISK-QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI 314 (789)
Q Consensus 236 l~~~l~~-~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi 314 (789)
+.+.+++ .|| .||++|.++++.+++|+|++++||||+|||++++++++... ..++++|||+||++|+.|+
T Consensus 68 ~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~--------~~g~~aLVl~PTreLa~Qi 138 (1638)
T PRK14701 68 FEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA--------LKGKKCYIILPTTLLVKQT 138 (1638)
T ss_pred HHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH--------hcCCeEEEEECHHHHHHHH
Confidence 4455665 699 69999999999999999999999999999996666555442 2367899999999999999
Q ss_pred HHHHHHHhhhc--CcEEEEEEcCCChHHHH---HHHhcC-CcEEEeCHHHHHHHHhhccccccceeEEEEcccchhcc--
Q 003887 315 YLETKKFAKSH--GIRVSAVYGGMSKLDQF---KELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD-- 386 (789)
Q Consensus 315 ~~~~~k~~~~~--~i~v~~~~gg~~~~~~~---~~l~~~-~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~-- 386 (789)
++.++.++... ++++.+++|+.+..++. ..+..+ ++|||+||++|.+.+... ....+++|||||||+|++
T Consensus 139 ~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD~ml~~~ 216 (1638)
T PRK14701 139 VEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVDAFLKAS 216 (1638)
T ss_pred HHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECceeccccc
Confidence 99999998765 46778888998876653 345554 899999999998876532 226789999999999986
Q ss_pred ---------CCChHHHHH----HHh----------------------hcCCCce-EEEEeccCcHHHHHHHHHHhCCCeE
Q 003887 387 ---------LGFEPQIRS----IVG----------------------QIRPDRQ-TLLFSATMPRKVEKLAREILSDPVR 430 (789)
Q Consensus 387 ---------~~f~~~i~~----il~----------------------~~~~~~q-~ll~SATl~~~v~~l~~~~l~~p~~ 430 (789)
+||.+.+.. ++. .++..+| ++++|||+++.. ....++.++..
T Consensus 217 knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~--~~~~l~~~~l~ 294 (1638)
T PRK14701 217 KNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKG--DRVKLYRELLG 294 (1638)
T ss_pred cccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchh--HHHHHhhcCeE
Confidence 578877764 332 2344555 677999998631 12244567777
Q ss_pred EeeccccCccccceEEEEecCCCcchHHHHHHhcCCCCCCCcEEEEeccccc---HHHHHHHHHHcCCceeeccCCCCHH
Q 003887 431 VTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTT---VDEIESQLAQKGFKAAALHGDKDQA 507 (789)
Q Consensus 431 i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~---a~~l~~~L~~~g~~v~~lhg~~~~~ 507 (789)
+.++........+.+.+..... ..+ ..|+.++... ..++||||+++.. |+.|++.|...|+++..+||+
T Consensus 295 f~v~~~~~~lr~i~~~yi~~~~-~~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~---- 366 (1638)
T PRK14701 295 FEVGSGRSALRNIVDVYLNPEK-IIK-EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK---- 366 (1638)
T ss_pred EEecCCCCCCCCcEEEEEECCH-HHH-HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch----
Confidence 7777666666777777665532 223 4666776654 3589999999876 589999999999999999995
Q ss_pred HHHHHHHHhhcCCccEEEee----hhhhccCCCCC-ccEEEEEcCCC---CHHHHHHHH-------------hhcCCCCC
Q 003887 508 SRMEILQKFKSGVYHVLIAT----DVAARGLDIKS-IKSVVNFDIAR---DMDMHVHRI-------------GRTGRAGD 566 (789)
Q Consensus 508 eR~~~l~~F~~G~~~VLVaT----~v~~~GlDI~~-v~~VI~~d~p~---s~~~y~Qri-------------GR~gR~G~ 566 (789)
|..+++.|++|+++||||| ++++||||+|+ |++|||||+|. +++.|.|-. ||++|.|
T Consensus 367 -R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g- 444 (1638)
T PRK14701 367 -NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEG- 444 (1638)
T ss_pred -HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccC-
Confidence 8899999999999999999 58999999999 99999999999 887666654 9999998
Q ss_pred CCeEEEEEEccccHHHHHHH
Q 003887 567 KDGTAYTLVTQKEARFAGEL 586 (789)
Q Consensus 567 ~~G~~i~l~~~~d~~~~~~l 586 (789)
....++..+...+..+++.+
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~ 464 (1638)
T PRK14701 445 IPIEGVLDVFPEDVEFLRSI 464 (1638)
T ss_pred CcchhHHHhHHHHHHHHHHH
Confidence 45666644444444444433
No 57
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.2e-36 Score=361.87 Aligned_cols=305 Identities=21% Similarity=0.278 Sum_probs=236.6
Q ss_pred HHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHh-hhcCcEE
Q 003887 251 IQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA-KSHGIRV 329 (789)
Q Consensus 251 iQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~-~~~~i~v 329 (789)
+-.+.+..+.+++++|++|+||||||++|.++++.... .++++||+.|||++|.|+++.+.+.. ...+..|
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~--------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~V 77 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG--------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTV 77 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc--------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEE
Confidence 33456677778899999999999999999999988751 24579999999999999998875443 3345566
Q ss_pred EEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccc-hhccCCChHHH-HHHHhhcCCCceEE
Q 003887 330 SAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD-RMFDLGFEPQI-RSIVGQIRPDRQTL 407 (789)
Q Consensus 330 ~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah-~m~~~~f~~~i-~~il~~~~~~~q~l 407 (789)
.+.+.+... .....+|+|+|+++|++++.. ...|.++++|||||+| ++++.++.-.+ ..+...++++.|+|
T Consensus 78 Gy~vr~~~~------~s~~t~I~v~T~G~Llr~l~~-d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlI 150 (819)
T TIGR01970 78 GYRVRGENK------VSRRTRLEVVTEGILTRMIQD-DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKIL 150 (819)
T ss_pred EEEEccccc------cCCCCcEEEECCcHHHHHHhh-CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEE
Confidence 665554332 234578999999999998876 4579999999999999 68887765443 45566678899999
Q ss_pred EEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchH-----HHHHHhcCCCCCCCcEEEEeccccc
Q 003887 408 LFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKL-----PWLLEKLPGMIDDGDVLVFASKKTT 482 (789)
Q Consensus 408 l~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~-----~~L~~~L~~~~~~~kvLVF~~s~~~ 482 (789)
+||||++... +..|+.++..+.+... ...+.+.+..... ..++ ..+...+.. ..+.+||||+++.+
T Consensus 151 lmSATl~~~~---l~~~l~~~~vI~~~gr---~~pVe~~y~~~~~-~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~~e 221 (819)
T TIGR01970 151 AMSATLDGER---LSSLLPDAPVVESEGR---SFPVEIRYLPLRG-DQRLEDAVSRAVEHALAS--ETGSILVFLPGQAE 221 (819)
T ss_pred EEeCCCCHHH---HHHHcCCCcEEEecCc---ceeeeeEEeecch-hhhHHHHHHHHHHHHHHh--cCCcEEEEECCHHH
Confidence 9999998653 4567766555544322 2234554443322 2222 123333332 35799999999999
Q ss_pred HHHHHHHHHH---cCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEcCCCC---------
Q 003887 483 VDEIESQLAQ---KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARD--------- 550 (789)
Q Consensus 483 a~~l~~~L~~---~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s--------- 550 (789)
++.++..|.+ .++.+..|||+|++.+|..+++.|++|..+|||||+++++||||++|++||+++.+..
T Consensus 222 I~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~ 301 (819)
T TIGR01970 222 IRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGI 301 (819)
T ss_pred HHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCC
Confidence 9999999987 4789999999999999999999999999999999999999999999999999998752
Q ss_pred ---------HHHHHHHHhhcCCCCCCCeEEEEEEccccHH
Q 003887 551 ---------MDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581 (789)
Q Consensus 551 ---------~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~ 581 (789)
-..|+||.||+||.. +|.||.|+++.+..
T Consensus 302 ~~L~~~~iSkasa~QR~GRAGR~~--~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 302 TRLETVRISQASATQRAGRAGRLE--PGVCYRLWSEEQHQ 339 (819)
T ss_pred ceeeEEEECHHHHHhhhhhcCCCC--CCEEEEeCCHHHHH
Confidence 345899999999984 79999999986543
No 58
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.3e-36 Score=338.47 Aligned_cols=332 Identities=22% Similarity=0.385 Sum_probs=266.1
Q ss_pred HHHHH-cCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHH
Q 003887 238 HAISK-QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYL 316 (789)
Q Consensus 238 ~~l~~-~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~ 316 (789)
..|+. .||..++|-|.++|..+++++|+|+..|||.||+++|.+|++.. .| .+|||.|..+|+...++
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~----------~G-~TLVVSPLiSLM~DQV~ 75 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL----------EG-LTLVVSPLISLMKDQVD 75 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc----------CC-CEEEECchHHHHHHHHH
Confidence 33443 48999999999999999999999999999999999999999764 23 47999999999998888
Q ss_pred HHHHHhhhcCcEEEEEEcCCChHHHHH---HHhcC-CcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCC--Ch
Q 003887 317 ETKKFAKSHGIRVSAVYGGMSKLDQFK---ELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG--FE 390 (789)
Q Consensus 317 ~~~k~~~~~~i~v~~~~gg~~~~~~~~---~l~~~-~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~--f~ 390 (789)
.++.. |+.+.++.+..+..+... .+..+ .+|+.-+|++|..-.-...+.-..+.++||||||.+.+|| |.
T Consensus 76 ~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFR 151 (590)
T COG0514 76 QLEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFR 151 (590)
T ss_pred HHHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccC
Confidence 88776 889999888877655433 33333 7999999999965433333345578999999999999997 88
Q ss_pred HHHHHHH---hhcCCCceEEEEeccCcHHHHHHHHHHhCCCe-EEeeccccCccccceEEEEecCCCcchHHHHHHhcCC
Q 003887 391 PQIRSIV---GQIRPDRQTLLFSATMPRKVEKLAREILSDPV-RVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPG 466 (789)
Q Consensus 391 ~~i~~il---~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~-~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~ 466 (789)
+.+..+- ..++ +..++.+|||.++.+..-+...+..-. .+.+. ....++|.-.+........+..++.+.+.
T Consensus 152 P~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~--sfdRpNi~~~v~~~~~~~~q~~fi~~~~~- 227 (590)
T COG0514 152 PDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRG--SFDRPNLALKVVEKGEPSDQLAFLATVLP- 227 (590)
T ss_pred HhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEe--cCCCchhhhhhhhcccHHHHHHHHHhhcc-
Confidence 8877654 3343 788999999999988877766655322 22222 22333443333333233444444444222
Q ss_pred CCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEc
Q 003887 467 MIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFD 546 (789)
Q Consensus 467 ~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d 546 (789)
...+..||||.|+..++.++.+|...|+.+..+|++|+..+|+.+.+.|..++++|+|||.++++|||-|+|++|||||
T Consensus 228 -~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~ 306 (590)
T COG0514 228 -QLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYD 306 (590)
T ss_pred -ccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEec
Confidence 2355789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHHHH
Q 003887 547 IARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSL 590 (789)
Q Consensus 547 ~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~L 590 (789)
+|.+++.|.|-+||+||.| .+..|++|+.+.|..+...++...
T Consensus 307 lP~s~EsYyQE~GRAGRDG-~~a~aill~~~~D~~~~~~~i~~~ 349 (590)
T COG0514 307 LPGSIESYYQETGRAGRDG-LPAEAILLYSPEDIRWQRYLIEQS 349 (590)
T ss_pred CCCCHHHHHHHHhhccCCC-CcceEEEeeccccHHHHHHHHHhh
Confidence 9999999999999999999 789999999999998877766554
No 59
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.4e-36 Score=344.79 Aligned_cols=317 Identities=20% Similarity=0.248 Sum_probs=246.1
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003887 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~ 325 (789)
..|+|+|..+++.++.|+ |+.+.||+|||++|++|++.+++ .++.++||+||++||.|.++++.+++..+
T Consensus 102 ~~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al--------~G~~v~VvTptreLA~qdae~~~~l~~~l 171 (656)
T PRK12898 102 QRHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL--------AGLPVHVITVNDYLAERDAELMRPLYEAL 171 (656)
T ss_pred CCCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh--------cCCeEEEEcCcHHHHHHHHHHHHHHHhhc
Confidence 479999999999999998 99999999999999999998763 36789999999999999999999999999
Q ss_pred CcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHH-HHHHhhcc-------------------------ccccceeEEEEc
Q 003887 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMKA-------------------------LTMSRVTYLVLD 379 (789)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L-~~~l~~~~-------------------------~~l~~i~~lVlD 379 (789)
++++.+++|+.+. +.+.+..++||+|+|..-| .+.|..+. .....+.++|||
T Consensus 172 Glsv~~i~gg~~~--~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvD 249 (656)
T PRK12898 172 GLTVGCVVEDQSP--DERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVD 249 (656)
T ss_pred CCEEEEEeCCCCH--HHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEee
Confidence 9999999999764 3455567899999999888 44443221 123557899999
Q ss_pred ccchhc-c--------------C--------------------CCh---------------HHHHHHHhh----------
Q 003887 380 EADRMF-D--------------L--------------------GFE---------------PQIRSIVGQ---------- 399 (789)
Q Consensus 380 Eah~m~-~--------------~--------------------~f~---------------~~i~~il~~---------- 399 (789)
|+|.|+ | . +|. ..+..++..
T Consensus 250 EvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~ 329 (656)
T PRK12898 250 EADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVR 329 (656)
T ss_pred cccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchH
Confidence 999762 1 0 000 000000000
Q ss_pred --------c------CC-------------------------------------------------------------Cc
Q 003887 400 --------I------RP-------------------------------------------------------------DR 404 (789)
Q Consensus 400 --------~------~~-------------------------------------------------------------~~ 404 (789)
+ .. -.
T Consensus 330 ~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~ 409 (656)
T PRK12898 330 REELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYL 409 (656)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhH
Confidence 0 00 03
Q ss_pred eEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHHHHhcCCCC-CCCcEEEEecccccH
Q 003887 405 QTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTV 483 (789)
Q Consensus 405 q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a 483 (789)
++.+||||.+....++...|..+++.|...... .....+.+ ++.....|+..|...+.... ...++||||+++..+
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~--~r~~~~~~-v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~s 486 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS--QRRHLPDE-VFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAAS 486 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc--cceecCCE-EEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHH
Confidence 577899999888888888888887665543322 11122222 33345678888888886543 245899999999999
Q ss_pred HHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCC---Ccc-----EEEEEcCCCCHHHHH
Q 003887 484 DEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIK---SIK-----SVVNFDIARDMDMHV 555 (789)
Q Consensus 484 ~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~---~v~-----~VI~~d~p~s~~~y~ 555 (789)
+.++..|.+.++++..|||.+. +|+..+..|+.+...|||||++++||+||+ +|. +||+|++|.+...|+
T Consensus 487 e~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~ 564 (656)
T PRK12898 487 ERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDR 564 (656)
T ss_pred HHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHH
Confidence 9999999999999999999865 555556667666678999999999999999 676 999999999999999
Q ss_pred HHHhhcCCCCCCCeEEEEEEccccH
Q 003887 556 HRIGRTGRAGDKDGTAYTLVTQKEA 580 (789)
Q Consensus 556 QriGR~gR~G~~~G~~i~l~~~~d~ 580 (789)
||+|||||.| ++|.+++|++.+|.
T Consensus 565 hr~GRTGRqG-~~G~s~~~is~eD~ 588 (656)
T PRK12898 565 QLAGRCGRQG-DPGSYEAILSLEDD 588 (656)
T ss_pred HhcccccCCC-CCeEEEEEechhHH
Confidence 9999999999 68999999998774
No 60
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.1e-35 Score=319.87 Aligned_cols=324 Identities=25% Similarity=0.280 Sum_probs=242.2
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhh
Q 003887 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (789)
Q Consensus 245 ~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~ 324 (789)
..+++.||......++.+ |+|++.|||.|||+++++-+..++.+. .+ ++|+|+||+-|+.|.++.|.+++..
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~------~~-kvlfLAPTKPLV~Qh~~~~~~v~~i 84 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF------GG-KVLFLAPTKPLVLQHAEFCRKVTGI 84 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc------CC-eEEEecCCchHHHHHHHHHHHHhCC
Confidence 457899999998888776 999999999999999888888877543 23 7999999999999999999999876
Q ss_pred cCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcCCCc
Q 003887 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR 404 (789)
Q Consensus 325 ~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~ 404 (789)
..-.++.++|.....+. ..++....|+|+||+.+..-+..+.+++.++.+||||||||-...--...+.+.+-....++
T Consensus 85 p~~~i~~ltGev~p~~R-~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~ 163 (542)
T COG1111 85 PEDEIAALTGEVRPEER-EELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNP 163 (542)
T ss_pred ChhheeeecCCCChHHH-HHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCc
Confidence 55677788887766554 44555689999999999999999999999999999999998654322333444344445677
Q ss_pred eEEEEeccCcHHHHH---HHHHHhCCCeEEeec-----------------------------------------------
Q 003887 405 QTLLFSATMPRKVEK---LAREILSDPVRVTVG----------------------------------------------- 434 (789)
Q Consensus 405 q~ll~SATl~~~v~~---l~~~~l~~p~~i~i~----------------------------------------------- 434 (789)
.++++|||+-.+.+. ++..+.-..+.+...
T Consensus 164 ~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g 243 (542)
T COG1111 164 LILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELG 243 (542)
T ss_pred eEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 899999998433222 211111000000000
Q ss_pred ----cccC-------cc-------c-----------------------------cceE----------------------
Q 003887 435 ----EVGM-------AN-------E-----------------------------DITQ---------------------- 445 (789)
Q Consensus 435 ----~~~~-------~~-------~-----------------------------~i~q---------------------- 445 (789)
.... .. . .|..
T Consensus 244 ~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~ 323 (542)
T COG1111 244 VIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKS 323 (542)
T ss_pred ceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHH
Confidence 0000 00 0 0000
Q ss_pred ---------------EEEecCCCcchHHHHHHhcCCCC---CCCcEEEEecccccHHHHHHHHHHcCCcee-ecc-----
Q 003887 446 ---------------VVHVIPSDAEKLPWLLEKLPGMI---DDGDVLVFASKKTTVDEIESQLAQKGFKAA-ALH----- 501 (789)
Q Consensus 446 ---------------~~~~~~~~~~k~~~L~~~L~~~~---~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~-~lh----- 501 (789)
......-...|+..+.+++.+.+ .+.++|||++.+..++.|.++|.+.+..+. .+-
T Consensus 324 l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r 403 (542)
T COG1111 324 LLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASR 403 (542)
T ss_pred HhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeecccc
Confidence 00000012345555555554433 235899999999999999999999887764 332
Q ss_pred ---CCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccc
Q 003887 502 ---GDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK 578 (789)
Q Consensus 502 ---g~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~ 578 (789)
.+|+|.++.++++.|++|.++|||||+++++|||||.++.||+|++..|+..++||.|||||. +.|.+|+|++..
T Consensus 404 ~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~--r~Grv~vLvt~g 481 (542)
T COG1111 404 EGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK--RKGRVVVLVTEG 481 (542)
T ss_pred ccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC--CCCeEEEEEecC
Confidence 479999999999999999999999999999999999999999999999999999999999996 589999999988
Q ss_pred c
Q 003887 579 E 579 (789)
Q Consensus 579 d 579 (789)
.
T Consensus 482 t 482 (542)
T COG1111 482 T 482 (542)
T ss_pred c
Confidence 3
No 61
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=3.5e-36 Score=345.88 Aligned_cols=307 Identities=16% Similarity=0.161 Sum_probs=223.7
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhh
Q 003887 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (789)
Q Consensus 245 ~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~ 324 (789)
...|+++|.++++.++.++++++++|||+|||+++.+. ...++.. ...++||||||++|+.||.+.++++...
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l-~~~~~~~------~~~~vLilvpt~eL~~Q~~~~l~~~~~~ 184 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLL-SRYYLEN------YEGKVLIIVPTTSLVTQMIDDFVDYRLF 184 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHH-HHHHHhc------CCCeEEEEECcHHHHHHHHHHHHHhccc
Confidence 35899999999999999999999999999999975443 2222221 2347999999999999999999998754
Q ss_pred cCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcCCCc
Q 003887 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR 404 (789)
Q Consensus 325 ~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~ 404 (789)
....+..+++|.... .+.+|+|+||++|..... ..+.++++|||||||++... .+..++..+++.+
T Consensus 185 ~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~~~ 250 (501)
T PHA02558 185 PREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGK----SLTSIITKLDNCK 250 (501)
T ss_pred cccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccch----hHHHHHHhhhccc
Confidence 344555677775443 347999999999976442 24678999999999998753 4567777777778
Q ss_pred eEEEEeccCcHHHHHHH--HHHhCCCeEEeecccc-----C-ccccc--------------------eEEEEecCCCcch
Q 003887 405 QTLLFSATMPRKVEKLA--REILSDPVRVTVGEVG-----M-ANEDI--------------------TQVVHVIPSDAEK 456 (789)
Q Consensus 405 q~ll~SATl~~~v~~l~--~~~l~~p~~i~i~~~~-----~-~~~~i--------------------~q~~~~~~~~~~k 456 (789)
++++||||+........ ..+++ |+...+.... . ....+ .+.+..+.....+
T Consensus 251 ~~lGLTATp~~~~~~~~~~~~~fG-~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~R 329 (501)
T PHA02558 251 FKFGLTGSLRDGKANILQYVGLFG-DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKR 329 (501)
T ss_pred eEEEEeccCCCccccHHHHHHhhC-CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHH
Confidence 99999999975322111 11222 2221111000 0 00000 0000011112223
Q ss_pred HHHHHHhcCCCC-CCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEee-hhhhccC
Q 003887 457 LPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT-DVAARGL 534 (789)
Q Consensus 457 ~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT-~v~~~Gl 534 (789)
...+...+.... ...++||||.+.++++.|++.|...++++..+||++++.+|..+++.|++|...||||| +++++|+
T Consensus 330 n~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~ 409 (501)
T PHA02558 330 NKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGI 409 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecccc
Confidence 333333332222 34689999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred CCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEE
Q 003887 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYT 573 (789)
Q Consensus 535 DI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~ 573 (789)
|+|++++||++.++.+...|+||+||++|.+..+..|++
T Consensus 410 Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i 448 (501)
T PHA02558 410 SIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATV 448 (501)
T ss_pred ccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEE
Confidence 999999999999999999999999999999843344443
No 62
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=3.9e-36 Score=332.99 Aligned_cols=301 Identities=20% Similarity=0.222 Sum_probs=213.2
Q ss_pred CEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChH----
Q 003887 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKL---- 339 (789)
Q Consensus 264 dvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~---- 339 (789)
++++++|||||||++|++|++..+.. ..+.++||++|+++|+.|+++.+..++. ..+..+++.....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~------~~~~~ii~v~P~~~L~~q~~~~l~~~f~---~~~~~~~~~~~~~~~~~ 71 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS------QKADRVIIALPTRATINAMYRRAKELFG---SNLGLLHSSSSFKRIKE 71 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh------CCCCeEEEEeehHHHHHHHHHHHHHHhC---cccEEeeccHHHHHHhc
Confidence 58999999999999999999987643 2356799999999999999999998754 2344444433210
Q ss_pred -------HHH-HHH------hcCCcEEEeCHHHHHHHHhhcc----cccc--ceeEEEEcccchhccCCChHHHHHHHhh
Q 003887 340 -------DQF-KEL------KAGCEIVIATPGRLIDMLKMKA----LTMS--RVTYLVLDEADRMFDLGFEPQIRSIVGQ 399 (789)
Q Consensus 340 -------~~~-~~l------~~~~dIiV~Tp~~L~~~l~~~~----~~l~--~i~~lVlDEah~m~~~~f~~~i~~il~~ 399 (789)
... ... ....+|+|+||+.++..+.... ..+. ..++|||||||.+.++.+.. +..++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~ 150 (358)
T TIGR01587 72 MGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEV 150 (358)
T ss_pred cCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHH
Confidence 000 011 1136899999999988765411 1111 23789999999998865443 5555555
Q ss_pred cC-CCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEe-cCCCcchHHHHHHhcCCCCCCCcEEEEe
Q 003887 400 IR-PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHV-IPSDAEKLPWLLEKLPGMIDDGDVLVFA 477 (789)
Q Consensus 400 ~~-~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~-~~~~~~k~~~L~~~L~~~~~~~kvLVF~ 477 (789)
++ .+.|+++||||+|..+..++..+...+....+..... .....+.+.. ......+...+..++......+++||||
T Consensus 151 l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~ 229 (358)
T TIGR01587 151 LKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEE-RRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIV 229 (358)
T ss_pred HHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCccc-cccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEE
Confidence 54 5789999999999877777666544322111110000 0011122211 1122334445555544434567999999
Q ss_pred cccccHHHHHHHHHHcCC--ceeeccCCCCHHHHHHH----HHHhhcCCccEEEeehhhhccCCCCCccEEEEEcCCCCH
Q 003887 478 SKKTTVDEIESQLAQKGF--KAAALHGDKDQASRMEI----LQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDM 551 (789)
Q Consensus 478 ~s~~~a~~l~~~L~~~g~--~v~~lhg~~~~~eR~~~----l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~ 551 (789)
+++..|+.++..|++.+. .+..+||++++.+|.++ ++.|++|+.+|||||+++++|+||+ +++||++..| +
T Consensus 230 ~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~ 306 (358)
T TIGR01587 230 NTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--I 306 (358)
T ss_pred CCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--H
Confidence 999999999999988766 49999999999999764 8899999999999999999999995 8899998776 7
Q ss_pred HHHHHHHhhcCCCCCCCe---EEEEEEccc
Q 003887 552 DMHVHRIGRTGRAGDKDG---TAYTLVTQK 578 (789)
Q Consensus 552 ~~y~QriGR~gR~G~~~G---~~i~l~~~~ 578 (789)
..|+||+||+||.|.+.+ .+++|....
T Consensus 307 ~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 307 DSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred HHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 899999999999985444 667666543
No 63
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=2.3e-36 Score=360.23 Aligned_cols=303 Identities=21% Similarity=0.284 Sum_probs=234.3
Q ss_pred HHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH-hhhcCcEEE
Q 003887 252 QCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF-AKSHGIRVS 330 (789)
Q Consensus 252 Q~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~-~~~~~i~v~ 330 (789)
-.+.+..+.+++++|++|+||||||++|.++++.... ...++||++|||++|.|+++.+.+. ....+..+.
T Consensus 10 ~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~--------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VG 81 (812)
T PRK11664 10 LPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG--------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVG 81 (812)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC--------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEE
Confidence 3456677778899999999999999999998886531 1247999999999999999988644 334566777
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccch-hccCCCh-HHHHHHHhhcCCCceEEE
Q 003887 331 AVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR-MFDLGFE-PQIRSIVGQIRPDRQTLL 408 (789)
Q Consensus 331 ~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~-m~~~~f~-~~i~~il~~~~~~~q~ll 408 (789)
+.+++.... .....|+|+||++|++++.. ...|..+++|||||+|. +++.++. ..+..++..++++.|+|+
T Consensus 82 y~vr~~~~~------~~~t~I~v~T~G~Llr~l~~-d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlil 154 (812)
T PRK11664 82 YRMRAESKV------GPNTRLEVVTEGILTRMIQR-DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLI 154 (812)
T ss_pred EEecCcccc------CCCCcEEEEChhHHHHHHhh-CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEE
Confidence 777765432 12468999999999998875 45799999999999995 5665543 234456677788999999
Q ss_pred EeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHH-----HHHHhcCCCCCCCcEEEEecccccH
Q 003887 409 FSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLP-----WLLEKLPGMIDDGDVLVFASKKTTV 483 (789)
Q Consensus 409 ~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~-----~L~~~L~~~~~~~kvLVF~~s~~~a 483 (789)
||||++.. .+..|+.++..+.+... ...+.+.+..+.. ..++. .+...+.. ..+.+||||+++.++
T Consensus 155 mSATl~~~---~l~~~~~~~~~I~~~gr---~~pV~~~y~~~~~-~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~~ei 225 (812)
T PRK11664 155 MSATLDND---RLQQLLPDAPVIVSEGR---SFPVERRYQPLPA-HQRFDEAVARATAELLRQ--ESGSLLLFLPGVGEI 225 (812)
T ss_pred EecCCCHH---HHHHhcCCCCEEEecCc---cccceEEeccCch-hhhHHHHHHHHHHHHHHh--CCCCEEEEcCCHHHH
Confidence 99999865 23567766555544322 2235555544432 22322 23333332 358999999999999
Q ss_pred HHHHHHHHH---cCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEcCCCC----------
Q 003887 484 DEIESQLAQ---KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARD---------- 550 (789)
Q Consensus 484 ~~l~~~L~~---~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s---------- 550 (789)
+.+++.|.. .++.+..+||+|++.+|..++..|++|+.+|||||+++++||||++|++||+++.+..
T Consensus 226 ~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~ 305 (812)
T PRK11664 226 QRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLT 305 (812)
T ss_pred HHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcc
Confidence 999999987 5788999999999999999999999999999999999999999999999999776653
Q ss_pred --------HHHHHHHHhhcCCCCCCCeEEEEEEccccH
Q 003887 551 --------MDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (789)
Q Consensus 551 --------~~~y~QriGR~gR~G~~~G~~i~l~~~~d~ 580 (789)
-..|+||.||+||.+ +|.||.|+++.+.
T Consensus 306 ~L~~~~iSkasa~QR~GRaGR~~--~G~cyrL~t~~~~ 341 (812)
T PRK11664 306 RLVTQRISQASMTQRAGRAGRLE--PGICLHLYSKEQA 341 (812)
T ss_pred eeEEEeechhhhhhhccccCCCC--CcEEEEecCHHHH
Confidence 357999999999985 7999999987654
No 64
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=4.5e-35 Score=359.89 Aligned_cols=292 Identities=25% Similarity=0.322 Sum_probs=228.0
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHH
Q 003887 236 LMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIY 315 (789)
Q Consensus 236 l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~ 315 (789)
+.+.+.+.....|+++|..+++.++.|+|++++||||+|||+ |.+|++.++.. .++++|||+||++||.|++
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-------~g~~vLIL~PTreLa~Qi~ 138 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK-------KGKRCYIILPTTLLVIQVA 138 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeCHHHHHHHHH
Confidence 445555545558999999999999999999999999999997 67777666532 2688999999999999999
Q ss_pred HHHHHHhhhcCcEEE---EEEcCCChHHH---HHHHhc-CCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhcc--
Q 003887 316 LETKKFAKSHGIRVS---AVYGGMSKLDQ---FKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD-- 386 (789)
Q Consensus 316 ~~~~k~~~~~~i~v~---~~~gg~~~~~~---~~~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~-- 386 (789)
+.+++++...++.+. +++|+.+..++ +..+.. +++|||+||++|.+.+.. +.. .+++|||||||+|++
T Consensus 139 ~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~--l~~-~~~~iVvDEaD~~L~~~ 215 (1171)
T TIGR01054 139 EKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE--LGP-KFDFIFVDDVDALLKAS 215 (1171)
T ss_pred HHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH--hcC-CCCEEEEeChHhhhhcc
Confidence 999999987776543 46788776654 334444 499999999999987754 222 899999999999998
Q ss_pred ---------CCChHH-HHHHH----------------------hhcCCCce--EEEEecc-CcHHHHHHHHHHhCCCeEE
Q 003887 387 ---------LGFEPQ-IRSIV----------------------GQIRPDRQ--TLLFSAT-MPRKVEKLAREILSDPVRV 431 (789)
Q Consensus 387 ---------~~f~~~-i~~il----------------------~~~~~~~q--~ll~SAT-l~~~v~~l~~~~l~~p~~i 431 (789)
+||..+ +..++ ..++..+| +++|||| +|..+. ..++.++..+
T Consensus 216 k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~---~~l~r~ll~~ 292 (1171)
T TIGR01054 216 KNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKR---AKLFRELLGF 292 (1171)
T ss_pred ccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccH---HHHcccccce
Confidence 688764 44443 23444555 5678999 565543 2345566667
Q ss_pred eeccccCccccceEEEEecCCCcchHHHHHHhcCCCCCCCcEEEEeccc---ccHHHHHHHHHHcCCceeeccCCCCHHH
Q 003887 432 TVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKK---TTVDEIESQLAQKGFKAAALHGDKDQAS 508 (789)
Q Consensus 432 ~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~---~~a~~l~~~L~~~g~~v~~lhg~~~~~e 508 (789)
.++.......+|.+.+..... +...|.+++... ..++||||+++ +.|+.|+..|...|+++..+||++++
T Consensus 293 ~v~~~~~~~r~I~~~~~~~~~---~~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~-- 365 (1171)
T TIGR01054 293 EVGGGSDTLRNVVDVYVEDED---LKETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK-- 365 (1171)
T ss_pred EecCccccccceEEEEEeccc---HHHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH--
Confidence 776666666677777654422 244566666543 35899999999 99999999999999999999999973
Q ss_pred HHHHHHHhhcCCccEEEee----hhhhccCCCCC-ccEEEEEcCCCC
Q 003887 509 RMEILQKFKSGVYHVLIAT----DVAARGLDIKS-IKSVVNFDIARD 550 (789)
Q Consensus 509 R~~~l~~F~~G~~~VLVaT----~v~~~GlDI~~-v~~VI~~d~p~s 550 (789)
.+++.|++|+++||||| ++++||||||+ |++|||||+|..
T Consensus 366 --~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 366 --EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred --HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCE
Confidence 68999999999999994 99999999999 899999999973
No 65
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=1.1e-33 Score=316.78 Aligned_cols=360 Identities=24% Similarity=0.334 Sum_probs=291.8
Q ss_pred HHHHHH-HHHcCCCCCcHHHHHHHHHHHcC------CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcC
Q 003887 234 TQLMHA-ISKQGYEKPTSIQCQALPIILSG------RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP 306 (789)
Q Consensus 234 ~~l~~~-l~~~g~~~ptpiQ~~ai~~il~g------rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~P 306 (789)
..+++. +....| +||..|++++..|... .+-|+++..|||||++++++|+..+ ..|.++.+++|
T Consensus 249 ~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai--------~~G~Q~ALMAP 319 (677)
T COG1200 249 GELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAI--------EAGYQAALMAP 319 (677)
T ss_pred HHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHH--------HcCCeeEEecc
Confidence 344444 455566 7999999999999854 4679999999999999999999987 55788999999
Q ss_pred cHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHH---HHHHHhcC-CcEEEeCHHHHHHHHhhccccccceeEEEEcccc
Q 003887 307 TRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD---QFKELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD 382 (789)
Q Consensus 307 TreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~---~~~~l~~~-~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah 382 (789)
|.-||.|.++.+.+|+...+++|..++|...... ....+..| .+|||+|..-+.+ ...++++.++|+||-|
T Consensus 320 TEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd-----~V~F~~LgLVIiDEQH 394 (677)
T COG1200 320 TEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD-----KVEFHNLGLVIIDEQH 394 (677)
T ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhc-----ceeecceeEEEEeccc
Confidence 9999999999999999999999999999776543 34455566 9999999766654 5578899999999999
Q ss_pred hhccCCChHHHHHHHhhcCC-CceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHHH
Q 003887 383 RMFDLGFEPQIRSIVGQIRP-DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLL 461 (789)
Q Consensus 383 ~m~~~~f~~~i~~il~~~~~-~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~ 461 (789)
| |+...+..+..-.. .++.|+||||+-|. .|+-..+.+.....+.+.+....+|...+... .+...++
T Consensus 395 R-----FGV~QR~~L~~KG~~~Ph~LvMTATPIPR--TLAlt~fgDldvS~IdElP~GRkpI~T~~i~~----~~~~~v~ 463 (677)
T COG1200 395 R-----FGVHQRLALREKGEQNPHVLVMTATPIPR--TLALTAFGDLDVSIIDELPPGRKPITTVVIPH----ERRPEVY 463 (677)
T ss_pred c-----ccHHHHHHHHHhCCCCCcEEEEeCCCchH--HHHHHHhccccchhhccCCCCCCceEEEEecc----ccHHHHH
Confidence 9 88888888877766 68999999996443 36778888887777777777777887766554 3334444
Q ss_pred HhcCC-CCCCCcEEEEecccccH--------HHHHHHHHHc--CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhh
Q 003887 462 EKLPG-MIDDGDVLVFASKKTTV--------DEIESQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530 (789)
Q Consensus 462 ~~L~~-~~~~~kvLVF~~s~~~a--------~~l~~~L~~~--g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~ 530 (789)
+.+.+ ...+.++.|.|+-.++. ..+++.|+.. ++.+..+||.|+..++++++..|++|+++|||||.++
T Consensus 464 e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVI 543 (677)
T COG1200 464 ERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVI 543 (677)
T ss_pred HHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEE
Confidence 44333 22456899999987654 4556666643 5679999999999999999999999999999999999
Q ss_pred hccCCCCCccEEEEEcCCCCHHHHHHHH-hhcCCCCCCCeEEEEEEccccHHHHHHHHHHHHHcCCCccHHHHHHHHhcC
Q 003887 531 ARGLDIKSIKSVVNFDIARDMDMHVHRI-GRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMKDG 609 (789)
Q Consensus 531 ~~GlDI~~v~~VI~~d~p~s~~~y~Qri-GR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~L~~~~~~vp~~l~~~a~~~~ 609 (789)
+.|+|+|+++++|+++.-.--..-+|.+ ||+||.+ ....|+.++.+......++.++.|..+.+.+-..-.|+.+
T Consensus 544 EVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~-~qSyC~Ll~~~~~~~~a~~RL~im~~t~DGF~IAE~DLkl--- 619 (677)
T COG1200 544 EVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGD-LQSYCVLLYKPPLSEVAKQRLKIMRETTDGFVIAEEDLKL--- 619 (677)
T ss_pred EecccCCCCeEEEEechhhhhHHHHHHhccccCCCC-cceEEEEEeCCCCChhHHHHHHHHHhcCCcceehhhhHhc---
Confidence 9999999999999999888766666666 9999976 7899999999888788889999999999999988888877
Q ss_pred cccccccccCCCCCCCCCCCC
Q 003887 610 RFRSKRDARKGGGKKGKGRGG 630 (789)
Q Consensus 610 ~~~~~~~~r~~g~~~g~g~gg 630 (789)
|+.|...|..+.|
T Consensus 620 --------RGpGe~lG~rQSG 632 (677)
T COG1200 620 --------RGPGELLGTRQSG 632 (677)
T ss_pred --------cCCccccCCcccC
Confidence 5556665555544
No 66
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=3.8e-35 Score=316.47 Aligned_cols=338 Identities=20% Similarity=0.280 Sum_probs=276.2
Q ss_pred cccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEc
Q 003887 227 FEDCGFSTQLMHAISKQGYEKPTSIQCQALPI-ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305 (789)
Q Consensus 227 f~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~-il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~ 305 (789)
..++.+|+.+.+.|+..|++.++|+|.-++.. ++.|+|.+++.+|+||||++.-++-+..++.. +.+.|+|+
T Consensus 196 vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~-------g~KmlfLv 268 (830)
T COG1202 196 VDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG-------GKKMLFLV 268 (830)
T ss_pred ccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC-------CCeEEEEe
Confidence 45678999999999999999999999999987 77999999999999999999888888777553 67789999
Q ss_pred CcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHH----HHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEccc
Q 003887 306 PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF----KELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEA 381 (789)
Q Consensus 306 PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~----~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEa 381 (789)
|..+||+|-++.++.-...+++.+.+-+|-.-....- ......+||||+|++.+-.+++.. ..+.++..|||||+
T Consensus 269 PLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEi 347 (830)
T COG1202 269 PLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEI 347 (830)
T ss_pred hhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeee
Confidence 9999999999999988888899887777643222111 111235899999999998888776 67999999999999
Q ss_pred chhccCCChHHHHHHHh---hcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHH
Q 003887 382 DRMFDLGFEPQIRSIVG---QIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLP 458 (789)
Q Consensus 382 h~m~~~~f~~~i~~il~---~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~ 458 (789)
|.+-+....+.+..++. .+-+..|+|.+|||+-+. +++++.+--.++...- .+.++..++.++.....|+.
T Consensus 348 HtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~~-----RPVplErHlvf~~~e~eK~~ 421 (830)
T COG1202 348 HTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYDE-----RPVPLERHLVFARNESEKWD 421 (830)
T ss_pred eeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeecC-----CCCChhHeeeeecCchHHHH
Confidence 99888665555555544 445789999999998765 5678887666655433 33356666777777778887
Q ss_pred HHHHhcCC-------CCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhh
Q 003887 459 WLLEKLPG-------MIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAA 531 (789)
Q Consensus 459 ~L~~~L~~-------~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~ 531 (789)
.+..+.+. ....|++|||++++..|..|+.+|...|+++..+|++++..+|..+...|.++.+.++|+|-+++
T Consensus 422 ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~ 501 (830)
T COG1202 422 IIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALA 501 (830)
T ss_pred HHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhh
Confidence 76655432 22457999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccEEE----EEcCCCCHHHHHHHHhhcCCCC-CCCeEEEEEEccc
Q 003887 532 RGLDIKSIKSVV----NFDIARDMDMHVHRIGRTGRAG-DKDGTAYTLVTQK 578 (789)
Q Consensus 532 ~GlDI~~v~~VI----~~d~p~s~~~y~QriGR~gR~G-~~~G~~i~l~~~~ 578 (789)
.|+|+|.-.+|+ +-.-|-++.+|.|++||+||.+ +..|++|.++.+.
T Consensus 502 AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 502 AGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred cCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 999999744333 2334669999999999999999 5579999998763
No 67
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2.9e-34 Score=335.46 Aligned_cols=320 Identities=19% Similarity=0.257 Sum_probs=236.8
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhh
Q 003887 244 GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (789)
Q Consensus 244 g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~ 323 (789)
|. .|+++|..+++.+++|+ |+.+.||+|||++|++|++...+ .|+.|+||+||++||.|.++.+..+..
T Consensus 76 g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al--------~G~~v~VvTpt~~LA~qd~e~~~~l~~ 144 (790)
T PRK09200 76 GM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL--------EGKGVHLITVNDYLAKRDAEEMGQVYE 144 (790)
T ss_pred CC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH--------cCCCeEEEeCCHHHHHHHHHHHHHHHh
Confidence 44 79999999999888886 99999999999999999986654 367799999999999999999999999
Q ss_pred hcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHH-HHHHhhc------cccccceeEEEEcccchhcc-C--------
Q 003887 324 SHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMK------ALTMSRVTYLVLDEADRMFD-L-------- 387 (789)
Q Consensus 324 ~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L-~~~l~~~------~~~l~~i~~lVlDEah~m~~-~-------- 387 (789)
.+++++.+++|+.+...+.+. ..+++|+++||++| .+++... ...+..+.++||||||.|+- .
T Consensus 145 ~lGl~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliis 223 (790)
T PRK09200 145 FLGLTVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIIS 223 (790)
T ss_pred hcCCeEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeee
Confidence 999999999999884444333 35699999999999 5555432 23567899999999998731 0
Q ss_pred -------CChHHHHHHHhhcCCC---------------------------------------------------------
Q 003887 388 -------GFEPQIRSIVGQIRPD--------------------------------------------------------- 403 (789)
Q Consensus 388 -------~f~~~i~~il~~~~~~--------------------------------------------------------- 403 (789)
.+...+..+...+...
T Consensus 224 g~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~ 303 (790)
T PRK09200 224 GKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDV 303 (790)
T ss_pred CCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCC
Confidence 0111111122111110
Q ss_pred ------------------------------------------------------------ceEEEEeccCcHHHHHHHHH
Q 003887 404 ------------------------------------------------------------RQTLLFSATMPRKVEKLARE 423 (789)
Q Consensus 404 ------------------------------------------------------------~q~ll~SATl~~~v~~l~~~ 423 (789)
..+.+||.|....-.++ ..
T Consensus 304 dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~-~~ 382 (790)
T PRK09200 304 DYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEF-FE 382 (790)
T ss_pred cEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHH-HH
Confidence 12344444443222222 22
Q ss_pred HhCCCeEEeeccccCccccceEEEEecCCCcchHHHHHHhcCCC-CCCCcEEEEecccccHHHHHHHHHHcCCceeeccC
Q 003887 424 ILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGM-IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHG 502 (789)
Q Consensus 424 ~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~-~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg 502 (789)
.++-.+.......+....+... .++.....|...|+..+... ....++||||+++..++.|+..|.+.++++..|||
T Consensus 383 ~Y~l~v~~IPt~kp~~r~d~~~--~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~ 460 (790)
T PRK09200 383 VYNMEVVQIPTNRPIIRIDYPD--KVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNA 460 (790)
T ss_pred HhCCcEEECCCCCCcccccCCC--eEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecC
Confidence 2222222111111111111111 12224456888888877653 24569999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCccEEEeehhhhccCCC---CCcc-----EEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEE
Q 003887 503 DKDQASRMEILQKFKSGVYHVLIATDVAARGLDI---KSIK-----SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTL 574 (789)
Q Consensus 503 ~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI---~~v~-----~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l 574 (789)
.+.+.++..+...++.| .|||||++++||+|| ++|. +||+|++|.+...|+||+|||||.| ++|.+++|
T Consensus 461 ~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G-~~G~s~~~ 537 (790)
T PRK09200 461 KNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQG-DPGSSQFF 537 (790)
T ss_pred CccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCC-CCeeEEEE
Confidence 99998888888777766 799999999999999 6998 9999999999999999999999999 68999999
Q ss_pred EccccHH
Q 003887 575 VTQKEAR 581 (789)
Q Consensus 575 ~~~~d~~ 581 (789)
++.+|.-
T Consensus 538 is~eD~l 544 (790)
T PRK09200 538 ISLEDDL 544 (790)
T ss_pred EcchHHH
Confidence 9987653
No 68
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.1e-33 Score=343.13 Aligned_cols=324 Identities=25% Similarity=0.319 Sum_probs=244.2
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhh
Q 003887 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (789)
Q Consensus 245 ~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~ 324 (789)
..+|++||.+++..++.+ ++|+++|||+|||++++++++..+. ..+.++|||+||++|+.||.+.+++++..
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~-------~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 84 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH-------KKGGKVLILAPTKPLVEQHAEFFRKFLNI 84 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH-------hCCCeEEEEeCcHHHHHHHHHHHHHHhCC
Confidence 357899999999988887 9999999999999999988887762 23567999999999999999999998754
Q ss_pred cCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcCCCc
Q 003887 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR 404 (789)
Q Consensus 325 ~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~ 404 (789)
....+..++|+.+.. ....+..+++|+|+||+.|...+....+.+.++++|||||||++........+...+....+..
T Consensus 85 ~~~~v~~~~g~~~~~-~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~ 163 (773)
T PRK13766 85 PEEKIVVFTGEVSPE-KRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNP 163 (773)
T ss_pred CCceEEEEeCCCCHH-HHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCC
Confidence 445777788776654 3455666789999999999888877778889999999999999875544444444444445567
Q ss_pred eEEEEeccCcHH---HHHHHHHHhCCCeEEe--------------------e---------------------------c
Q 003887 405 QTLLFSATMPRK---VEKLAREILSDPVRVT--------------------V---------------------------G 434 (789)
Q Consensus 405 q~ll~SATl~~~---v~~l~~~~l~~p~~i~--------------------i---------------------------~ 434 (789)
++++||||+... +..++..+....+.+. + +
T Consensus 164 ~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~ 243 (773)
T PRK13766 164 LVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELG 243 (773)
T ss_pred EEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 899999997322 2222222111100000 0 0
Q ss_pred cccCcc------------ccceEE--------------------------------------------------------
Q 003887 435 EVGMAN------------EDITQV-------------------------------------------------------- 446 (789)
Q Consensus 435 ~~~~~~------------~~i~q~-------------------------------------------------------- 446 (789)
...... ..+.+.
T Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~ 323 (773)
T PRK13766 244 VIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKAS 323 (773)
T ss_pred CcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHH
Confidence 000000 000000
Q ss_pred ---------------EEecCCCcchHHHHHHhcCCC---CCCCcEEEEecccccHHHHHHHHHHcCCceeeccCC-----
Q 003887 447 ---------------VHVIPSDAEKLPWLLEKLPGM---IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGD----- 503 (789)
Q Consensus 447 ---------------~~~~~~~~~k~~~L~~~L~~~---~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----- 503 (789)
+..+.....|+..|.++|.+. ....++||||+++..|+.|.++|...++.+..+||.
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~ 403 (773)
T PRK13766 324 KRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDG 403 (773)
T ss_pred HHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccc
Confidence 000011234555565555443 245699999999999999999999999999999986
Q ss_pred ---CCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEcccc
Q 003887 504 ---KDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE 579 (789)
Q Consensus 504 ---~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d 579 (789)
|++.+|..++..|++|.++|||||+++++|+|+|.+++||+||+|+++..|+||+||+||.| .|.+|+|++...
T Consensus 404 ~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~--~~~v~~l~~~~t 480 (773)
T PRK13766 404 DKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE--EGRVVVLIAKGT 480 (773)
T ss_pred cCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC--CCEEEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999987 488999987653
No 69
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=2.5e-34 Score=338.73 Aligned_cols=335 Identities=24% Similarity=0.309 Sum_probs=258.2
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHH-HcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHH
Q 003887 231 GFSTQLMHAISKQGYEKPTSIQCQALPII-LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRE 309 (789)
Q Consensus 231 ~l~~~l~~~l~~~g~~~ptpiQ~~ai~~i-l~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTre 309 (789)
.+++.+.+.++..++..+.|.|+.++... +.++|+|+|+|||||||+++++.+++.+++. +.++|+|||+++
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-------~~k~vYivPlkA 87 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-------GGKVVYIVPLKA 87 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-------CCcEEEEeChHH
Confidence 36778888888888878888888877654 5669999999999999999999999998654 566999999999
Q ss_pred HHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCC
Q 003887 310 LAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGF 389 (789)
Q Consensus 310 La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f 389 (789)
||.|++++++ ....+|++|...+|+..... +...+++|||+||+++-.++++....+..+++|||||+|.+.+...
T Consensus 88 La~Ek~~~~~-~~~~~GirV~~~TgD~~~~~---~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~R 163 (766)
T COG1204 88 LAEEKYEEFS-RLEELGIRVGISTGDYDLDD---ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTR 163 (766)
T ss_pred HHHHHHHHhh-hHHhcCCEEEEecCCcccch---hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCccc
Confidence 9999999999 44557999999999887554 2234699999999999999988777888999999999999988766
Q ss_pred hHHHHHHHhhcC---CCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccc-cceEEEEecCCCc-----chHHHH
Q 003887 390 EPQIRSIVGQIR---PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANE-DITQVVHVIPSDA-----EKLPWL 460 (789)
Q Consensus 390 ~~~i~~il~~~~---~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~-~i~q~~~~~~~~~-----~k~~~L 460 (789)
.+.+..|+..++ ...|++.+|||+|+ ..+++.|+-.+++............ ...+.+....... .+...+
T Consensus 164 G~~lE~iv~r~~~~~~~~rivgLSATlpN-~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~ 242 (766)
T COG1204 164 GPVLESIVARMRRLNELIRIVGLSATLPN-AEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLA 242 (766)
T ss_pred CceehhHHHHHHhhCcceEEEEEeeecCC-HHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHH
Confidence 777777766654 34799999999985 5788888877766333322222222 2223333332111 111222
Q ss_pred HH-hcCCCCCCCcEEEEecccccHHHHHHHHHHc-------------------------------------CCceeeccC
Q 003887 461 LE-KLPGMIDDGDVLVFASKKTTVDEIESQLAQK-------------------------------------GFKAAALHG 502 (789)
Q Consensus 461 ~~-~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~-------------------------------------g~~v~~lhg 502 (789)
+. .+......+++||||+++..+...++.|... ...++.+|.
T Consensus 243 ~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhA 322 (766)
T COG1204 243 LELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHA 322 (766)
T ss_pred HHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCcccccc
Confidence 22 2223335679999999999999999888731 124788999
Q ss_pred CCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEE----EEc-----CCCCHHHHHHHHhhcCCCC-CCCeEEE
Q 003887 503 DKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVV----NFD-----IARDMDMHVHRIGRTGRAG-DKDGTAY 572 (789)
Q Consensus 503 ~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI----~~d-----~p~s~~~y~QriGR~gR~G-~~~G~~i 572 (789)
+++..+|..+.+.|+.|.++|||||..++.|+|+|.-++|| .|+ .+-++.+|+|++||+||.| ...|.++
T Consensus 323 GL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~ 402 (766)
T COG1204 323 GLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAI 402 (766)
T ss_pred CCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEE
Confidence 99999999999999999999999999999999999766555 466 4557899999999999999 4456777
Q ss_pred EEEcc
Q 003887 573 TLVTQ 577 (789)
Q Consensus 573 ~l~~~ 577 (789)
++.+.
T Consensus 403 i~~~~ 407 (766)
T COG1204 403 ILATS 407 (766)
T ss_pred EEecC
Confidence 77633
No 70
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=1.2e-33 Score=327.32 Aligned_cols=320 Identities=20% Similarity=0.194 Sum_probs=229.4
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003887 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (789)
Q Consensus 247 ~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~ 326 (789)
.++|+|.|++..+..++..|+.++||+|||++|++|++.+++. ++.++||+|+++||.|+.+++..++..++
T Consensus 68 glrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~--------g~~V~VVTpn~yLA~Rdae~m~~l~~~LG 139 (762)
T TIGR03714 68 GMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT--------GKGAMLVTTNDYLAKRDAEEMGPVYEWLG 139 (762)
T ss_pred CCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc--------CCceEEeCCCHHHHHHHHHHHHHHHhhcC
Confidence 3566666666666656668999999999999999998777643 45699999999999999999999999999
Q ss_pred cEEEEEEcCCC---hHHHHHHHhcCCcEEEeCHHHH-HHHHhh------ccccccceeEEEEcccchhccC-C-------
Q 003887 327 IRVSAVYGGMS---KLDQFKELKAGCEIVIATPGRL-IDMLKM------KALTMSRVTYLVLDEADRMFDL-G------- 388 (789)
Q Consensus 327 i~v~~~~gg~~---~~~~~~~l~~~~dIiV~Tp~~L-~~~l~~------~~~~l~~i~~lVlDEah~m~~~-~------- 388 (789)
+.+.+++++.. .....+....+++|+++||++| .+.+.. ....+..+.++||||||.|+-. .
T Consensus 140 Lsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliis 219 (762)
T TIGR03714 140 LTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVIS 219 (762)
T ss_pred CcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeee
Confidence 99988887632 2223334446799999999999 555532 2345778999999999988321 0
Q ss_pred --------ChHHHHHHHhhcCCC---------------------------------------------------------
Q 003887 389 --------FEPQIRSIVGQIRPD--------------------------------------------------------- 403 (789)
Q Consensus 389 --------f~~~i~~il~~~~~~--------------------------------------------------------- 403 (789)
+...+..+...+...
T Consensus 220 g~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~ 299 (762)
T TIGR03714 220 GAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNK 299 (762)
T ss_pred CCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCC
Confidence 011111122211110
Q ss_pred ------------------------------------------------------------ceEEEEeccCcHHHHHHHHH
Q 003887 404 ------------------------------------------------------------RQTLLFSATMPRKVEKLARE 423 (789)
Q Consensus 404 ------------------------------------------------------------~q~ll~SATl~~~v~~l~~~ 423 (789)
.++.+||.|......++. .
T Consensus 300 dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~-~ 378 (762)
T TIGR03714 300 DYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFI-E 378 (762)
T ss_pred ceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHH-H
Confidence 134444555433333332 2
Q ss_pred HhCCCeEEeeccccCccccceEEEEecCCCcchHHHHHHhcCCC-CCCCcEEEEecccccHHHHHHHHHHcCCceeeccC
Q 003887 424 ILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGM-IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHG 502 (789)
Q Consensus 424 ~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~-~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg 502 (789)
+++-.+.......+....+... .++.....|+..+++.+.+. ....++||||+++..++.++..|.+.++++..|||
T Consensus 379 iY~l~v~~IPt~kp~~r~d~~d--~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a 456 (762)
T TIGR03714 379 TYSLSVVKIPTNKPIIRIDYPD--KIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNA 456 (762)
T ss_pred HhCCCEEEcCCCCCeeeeeCCC--eEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecC
Confidence 2222222111111111111111 22234556888888877653 34569999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCC---------CccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEE
Q 003887 503 DKDQASRMEILQKFKSGVYHVLIATDVAARGLDIK---------SIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYT 573 (789)
Q Consensus 503 ~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~---------~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~ 573 (789)
.+.+.++..+...|+.| .|||||++++||+||+ ++.+|++|++|....+ +||+|||||.| ++|.+++
T Consensus 457 ~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG-~~G~s~~ 532 (762)
T TIGR03714 457 QNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQG-DPGSSQF 532 (762)
T ss_pred CChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCC-CceeEEE
Confidence 99999988887777776 6999999999999999 9999999999998877 99999999999 7899999
Q ss_pred EEccccHH
Q 003887 574 LVTQKEAR 581 (789)
Q Consensus 574 l~~~~d~~ 581 (789)
|++..|.-
T Consensus 533 ~is~eD~l 540 (762)
T TIGR03714 533 FVSLEDDL 540 (762)
T ss_pred EEccchhh
Confidence 99987653
No 71
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=2.5e-33 Score=322.60 Aligned_cols=318 Identities=20% Similarity=0.239 Sum_probs=235.7
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003887 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~ 325 (789)
..|+++|..+.+.+..|+ |+.++||+|||++|++|++...+. +..|+||+||++||.|.++++.++...+
T Consensus 55 ~~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~VvTpt~~LA~qdae~~~~l~~~L 124 (745)
T TIGR00963 55 MRPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAEWMGQVYRFL 124 (745)
T ss_pred CCccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh--------CCCEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 368899998888887776 999999999999999999644432 4459999999999999999999999999
Q ss_pred CcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHH-HHHHhhc------cccccceeEEEEcccchhcc-CC---------
Q 003887 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMK------ALTMSRVTYLVLDEADRMFD-LG--------- 388 (789)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L-~~~l~~~------~~~l~~i~~lVlDEah~m~~-~~--------- 388 (789)
++++.+++|+.+...+... ..++|+|+||++| .++++.+ ...+..+.++||||+|+|+- ..
T Consensus 125 GLsv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~ 202 (745)
T TIGR00963 125 GLSVGLILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGP 202 (745)
T ss_pred CCeEEEEeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCC
Confidence 9999999999886544333 3589999999999 8888765 34678899999999998742 00
Q ss_pred ------ChHHHHHHHhhcCC--------C---------------------------------------------------
Q 003887 389 ------FEPQIRSIVGQIRP--------D--------------------------------------------------- 403 (789)
Q Consensus 389 ------f~~~i~~il~~~~~--------~--------------------------------------------------- 403 (789)
.......+...+.. .
T Consensus 203 ~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dY 282 (745)
T TIGR00963 203 AEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDY 282 (745)
T ss_pred CCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcE
Confidence 00000111111100 0
Q ss_pred ----------------------------------------------------------ceEEEEeccCcHHHHHHHHHHh
Q 003887 404 ----------------------------------------------------------RQTLLFSATMPRKVEKLAREIL 425 (789)
Q Consensus 404 ----------------------------------------------------------~q~ll~SATl~~~v~~l~~~~l 425 (789)
..+.+||.|......++ ..++
T Consensus 283 iV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~-~~iY 361 (745)
T TIGR00963 283 IVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEF-EKIY 361 (745)
T ss_pred EEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHH-HHHh
Confidence 12334444443332222 2222
Q ss_pred CCCeEEeeccccCccccceEEEEecCCCcchHHHHHHhcCCCC-CCCcEEEEecccccHHHHHHHHHHcCCceeeccCCC
Q 003887 426 SDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDK 504 (789)
Q Consensus 426 ~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~ 504 (789)
+-++.+.....+....+. ...++.....|+..+++.+.+.. .+.++||||+++..++.|+..|.+.++++..||+.
T Consensus 362 ~l~vv~IPtnkp~~R~d~--~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~- 438 (745)
T TIGR00963 362 NLEVVVVPTNRPVIRKDL--SDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK- 438 (745)
T ss_pred CCCEEEeCCCCCeeeeeC--CCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC-
Confidence 222222111111111111 11223344567777777664432 45599999999999999999999999999999998
Q ss_pred CHHHHHHHHHHhhcCCccEEEeehhhhccCCCCC-------ccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEcc
Q 003887 505 DQASRMEILQKFKSGVYHVLIATDVAARGLDIKS-------IKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (789)
Q Consensus 505 ~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~-------v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~ 577 (789)
+.+|+..+..|+.+...|+|||++++||+||+. ..+||+++.|.+...|.|++||+||.| .+|.+.+|++.
T Consensus 439 -q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG-~~G~s~~~ls~ 516 (745)
T TIGR00963 439 -NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQG-DPGSSRFFLSL 516 (745)
T ss_pred -hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCC-CCcceEEEEec
Confidence 889999999999999999999999999999998 559999999999999999999999999 68999999998
Q ss_pred ccHH
Q 003887 578 KEAR 581 (789)
Q Consensus 578 ~d~~ 581 (789)
.|.-
T Consensus 517 eD~l 520 (745)
T TIGR00963 517 EDNL 520 (745)
T ss_pred cHHH
Confidence 8753
No 72
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=1.5e-32 Score=311.88 Aligned_cols=321 Identities=26% Similarity=0.285 Sum_probs=231.5
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003887 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~ 325 (789)
..++.||.+.+..+| ++|+|+++|||+|||.+++..|++|+-..+ ..++|+++||+-|+.|....+..++..
T Consensus 61 ~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p------~~KiVF~aP~~pLv~QQ~a~~~~~~~~- 132 (746)
T KOG0354|consen 61 LELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP------KGKVVFLAPTRPLVNQQIACFSIYLIP- 132 (746)
T ss_pred ccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC------cceEEEeeCCchHHHHHHHHHhhccCc-
Confidence 579999999999999 999999999999999999999999986554 367999999999999998777777653
Q ss_pred CcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhcccc-ccceeEEEEcccchhccCCChHHHH-HHHhhcCCC
Q 003887 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALT-MSRVTYLVLDEADRMFDLGFEPQIR-SIVGQIRPD 403 (789)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~-l~~i~~lVlDEah~m~~~~f~~~i~-~il~~~~~~ 403 (789)
..+....||.........+....+|+|+||+.|.+.|...... |+.+.+|||||||+-....-...|+ ..+..-...
T Consensus 133 -~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~ 211 (746)
T KOG0354|consen 133 -YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQG 211 (746)
T ss_pred -ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhcc
Confidence 5666677775444444567778999999999999988775443 6999999999999866544444444 555544444
Q ss_pred ceEEEEeccCcHHHHHHHHHHhCCCeEEeecccc----------------------------------------------
Q 003887 404 RQTLLFSATMPRKVEKLAREILSDPVRVTVGEVG---------------------------------------------- 437 (789)
Q Consensus 404 ~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~---------------------------------------------- 437 (789)
.|+|++|||+-...+.....+..-.+.+.+....
T Consensus 212 ~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l 291 (746)
T KOG0354|consen 212 NQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGL 291 (746)
T ss_pred ccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCc
Confidence 5999999999654433322111100000000000
Q ss_pred -------------------Cccccc--eEE--------------------EEec--------------------------
Q 003887 438 -------------------MANEDI--TQV--------------------VHVI-------------------------- 450 (789)
Q Consensus 438 -------------------~~~~~i--~q~--------------------~~~~-------------------------- 450 (789)
...... .+. +..+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~ 371 (746)
T KOG0354|consen 292 IEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEAR 371 (746)
T ss_pred cccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcch
Confidence 000000 000 0000
Q ss_pred -------------------CCCcchHHHHHHhcCCC---CCCCcEEEEecccccHHHHHHHHHH---cCCceeeccC---
Q 003887 451 -------------------PSDAEKLPWLLEKLPGM---IDDGDVLVFASKKTTVDEIESQLAQ---KGFKAAALHG--- 502 (789)
Q Consensus 451 -------------------~~~~~k~~~L~~~L~~~---~~~~kvLVF~~s~~~a~~l~~~L~~---~g~~v~~lhg--- 502 (789)
+....|+..|.+.|... ....++||||.++..|+.|..+|.. .+++...+-|
T Consensus 372 ~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~ 451 (746)
T KOG0354|consen 372 LIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGK 451 (746)
T ss_pred hhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccc
Confidence 00122333333333221 1234899999999999999999983 2333333333
Q ss_pred -----CCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEcc
Q 003887 503 -----DKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (789)
Q Consensus 503 -----~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~ 577 (789)
+|+|.++.++++.|++|.++|||||+++++||||+.|++||-||...|+...+||.|| ||+ +.|.|+.|++.
T Consensus 452 s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa--~ns~~vll~t~ 528 (746)
T KOG0354|consen 452 STQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA--RNSKCVLLTTG 528 (746)
T ss_pred cccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc--cCCeEEEEEcc
Confidence 8999999999999999999999999999999999999999999999999999999999 998 47999999884
Q ss_pred c
Q 003887 578 K 578 (789)
Q Consensus 578 ~ 578 (789)
.
T Consensus 529 ~ 529 (746)
T KOG0354|consen 529 S 529 (746)
T ss_pred h
Confidence 3
No 73
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=4.4e-32 Score=298.93 Aligned_cols=290 Identities=18% Similarity=0.191 Sum_probs=204.9
Q ss_pred HHHHHHHHHHcCCC--EEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc---
Q 003887 251 IQCQALPIILSGRD--IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH--- 325 (789)
Q Consensus 251 iQ~~ai~~il~grd--vl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~--- 325 (789)
+|.++++.+.++.+ +++++|||+|||.+|++|++.. ..++|+++|+++|+.|+++.+++++...
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~-----------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~ 69 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG-----------ENDTIALYPTNALIEDQTEAIKEFVDVFKPE 69 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-----------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCC
Confidence 59999999999875 7889999999999999998842 2347999999999999999999987532
Q ss_pred -CcEEEEEEcCCChHH-HH-----------------HH--HhcCCcEEEeCHHHHHHHHhhcc--------ccccceeEE
Q 003887 326 -GIRVSAVYGGMSKLD-QF-----------------KE--LKAGCEIVIATPGRLIDMLKMKA--------LTMSRVTYL 376 (789)
Q Consensus 326 -~i~v~~~~gg~~~~~-~~-----------------~~--l~~~~dIiV~Tp~~L~~~l~~~~--------~~l~~i~~l 376 (789)
++.+..+.|.....- .. +. ....++|+++||+.|..++.... ..+..+++|
T Consensus 70 ~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~i 149 (357)
T TIGR03158 70 RDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTV 149 (357)
T ss_pred CCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEE
Confidence 455655555422110 00 00 12358899999999987664311 125789999
Q ss_pred EEcccchhccCC-----ChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHH--hCCCeEEeecccc---------Cc-
Q 003887 377 VLDEADRMFDLG-----FEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREI--LSDPVRVTVGEVG---------MA- 439 (789)
Q Consensus 377 VlDEah~m~~~~-----f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~--l~~p~~i~i~~~~---------~~- 439 (789)
||||+|.+..+. +......++.......+++++|||+++.+...+... ++.+..+..+..- ..
T Consensus 150 V~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~ 229 (357)
T TIGR03158 150 IFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADN 229 (357)
T ss_pred EEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccc
Confidence 999999876433 122333444443445799999999999887777765 4555433333200 00
Q ss_pred --------cccceEEEEecCCCcchHHHH---HHhcCCC---CCCCcEEEEecccccHHHHHHHHHHcC--CceeeccCC
Q 003887 440 --------NEDITQVVHVIPSDAEKLPWL---LEKLPGM---IDDGDVLVFASKKTTVDEIESQLAQKG--FKAAALHGD 503 (789)
Q Consensus 440 --------~~~i~q~~~~~~~~~~k~~~L---~~~L~~~---~~~~kvLVF~~s~~~a~~l~~~L~~~g--~~v~~lhg~ 503 (789)
...+.+.+.. ....+..++ .+.+.+. ...+++||||+++..++.++..|++.+ +.+..+||.
T Consensus 230 ~~~~~~~~~~~i~~~~~~--~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~ 307 (357)
T TIGR03158 230 KTQSFRPVLPPVELELIP--APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGF 307 (357)
T ss_pred cccccceeccceEEEEEe--CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecC
Confidence 0133343333 222333333 2322211 245689999999999999999999864 578899999
Q ss_pred CCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcC
Q 003887 504 KDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTG 562 (789)
Q Consensus 504 ~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~g 562 (789)
+++.+|.++. +..|||||++++|||||+.+ +|| ++ |.+...|+||+||+|
T Consensus 308 ~~~~~R~~~~------~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 308 APKKDRERAM------QFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CCHHHHHHhc------cCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 9999987653 78999999999999999987 566 55 889999999999997
No 74
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=8.7e-32 Score=311.91 Aligned_cols=321 Identities=17% Similarity=0.206 Sum_probs=220.7
Q ss_pred CCCcHHHHHHHHHHHc-C--CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHh
Q 003887 246 EKPTSIQCQALPIILS-G--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~-g--rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~ 322 (789)
..|+|||.+++..++. + +..++++|||+|||++.+.. +..+ +..+|||||+.+|+.||.+++.+|+
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~a-a~~l----------~k~tLILvps~~Lv~QW~~ef~~~~ 322 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTA-ACTV----------KKSCLVLCTSAVSVEQWKQQFKMWS 322 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHH-HHHh----------CCCEEEEeCcHHHHHHHHHHHHHhc
Confidence 4799999999999873 3 47899999999999986544 3443 2348999999999999999999997
Q ss_pred hhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhh--------ccccccceeEEEEcccchhccCCChHHHH
Q 003887 323 KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM--------KALTMSRVTYLVLDEADRMFDLGFEPQIR 394 (789)
Q Consensus 323 ~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~--------~~~~l~~i~~lVlDEah~m~~~~f~~~i~ 394 (789)
......+..++|+.... ......|+|+|+..+.....+ ..+.-..|++||+||||++.. ....
T Consensus 323 ~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr 393 (732)
T TIGR00603 323 TIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMFR 393 (732)
T ss_pred CCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHHH
Confidence 54445566666653221 112378999999987543221 112234689999999999753 4455
Q ss_pred HHHhhcCCCceEEEEeccCcHHHH--HHHHHHhCCCeEEeeccccCc----cccceEEEEecC-----------------
Q 003887 395 SIVGQIRPDRQTLLFSATMPRKVE--KLAREILSDPVRVTVGEVGMA----NEDITQVVHVIP----------------- 451 (789)
Q Consensus 395 ~il~~~~~~~q~ll~SATl~~~v~--~l~~~~l~~p~~i~i~~~~~~----~~~i~q~~~~~~----------------- 451 (789)
.++..+. ....|++|||+.+.-. ..+..+++ |........... ...+....+.++
T Consensus 394 ~il~~l~-a~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k 471 (732)
T TIGR00603 394 RVLTIVQ-AHCKLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKR 471 (732)
T ss_pred HHHHhcC-cCcEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhh
Confidence 5666654 3457999999864321 11222222 332222110000 001111111111
Q ss_pred -----CCcchHHHHHHhcCCC-CCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcC-CccEE
Q 003887 452 -----SDAEKLPWLLEKLPGM-IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSG-VYHVL 524 (789)
Q Consensus 452 -----~~~~k~~~L~~~L~~~-~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G-~~~VL 524 (789)
....|+..+..++... ....++||||.....+..++..| .+..|||.+++.+|..+++.|+.| .+++|
T Consensus 472 ~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L-----~~~~I~G~ts~~ER~~il~~Fr~~~~i~vL 546 (732)
T TIGR00603 472 MLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL-----GKPFIYGPTSQQERMQILQNFQHNPKVNTI 546 (732)
T ss_pred hHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc-----CCceEECCCCHHHHHHHHHHHHhCCCccEE
Confidence 1223444433344322 14569999999999988888877 256799999999999999999875 88999
Q ss_pred EeehhhhccCCCCCccEEEEEcCC-CCHHHHHHHHhhcCCCCCCCeE-------EEEEEccc--cHHHHHHHHHHHHHcC
Q 003887 525 IATDVAARGLDIKSIKSVVNFDIA-RDMDMHVHRIGRTGRAGDKDGT-------AYTLVTQK--EARFAGELVNSLIAAG 594 (789)
Q Consensus 525 VaT~v~~~GlDI~~v~~VI~~d~p-~s~~~y~QriGR~gR~G~~~G~-------~i~l~~~~--d~~~~~~l~~~L~~~~ 594 (789)
|+|+++.+|||+|++++||+++.| .+...|+||+||++|.+ ..+. .|+|++.. +..+.....+.|...+
T Consensus 547 v~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~-~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~~qG 625 (732)
T TIGR00603 547 FLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAK-KGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLVDQG 625 (732)
T ss_pred EEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCC-CCCccccccceEEEEecCCchHHHHHHHHHHHHHHCC
Confidence 999999999999999999999988 49999999999999998 3333 48899886 4555666666665544
No 75
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.98 E-value=6.2e-31 Score=318.29 Aligned_cols=303 Identities=21% Similarity=0.306 Sum_probs=213.0
Q ss_pred HHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcC----cHHHHHHHHHHHHHHhhhcC
Q 003887 251 IQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP----TRELAHQIYLETKKFAKSHG 326 (789)
Q Consensus 251 iQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~P----TreLa~Qi~~~~~k~~~~~~ 326 (789)
+..+.+..+..++.+|++|+||||||++ +|.+...... .....+++..| +++||.|+.+++..-. +
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~g~-----g~~g~I~~TQPRRlAArsLA~RVA~El~~~l---G 147 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLELGR-----GVKGLIGHTQPRRLAARTVANRIAEELETEL---G 147 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHcCC-----CCCCceeeCCCcHHHHHHHHHHHHHHHhhhh---c
Confidence 3445566677777888999999999985 7855443221 11123444557 5677888777776422 2
Q ss_pred cEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccc-hhccCCChHH-HHHHHhhcCCCc
Q 003887 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD-RMFDLGFEPQ-IRSIVGQIRPDR 404 (789)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah-~m~~~~f~~~-i~~il~~~~~~~ 404 (789)
-.+.+-+.. ..+ ...+++|+|+||++|++.+.... .|..+++||||||| ++++.+|... +..++. .+++.
T Consensus 148 ~~VGY~vrf---~~~---~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~-~rpdl 219 (1294)
T PRK11131 148 GCVGYKVRF---NDQ---VSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFILGYLKELLP-RRPDL 219 (1294)
T ss_pred ceeceeecC---ccc---cCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchHHHHHHHhhh-cCCCc
Confidence 222221111 111 13468999999999999987654 49999999999999 6899988754 333333 24678
Q ss_pred eEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCC-----cchHHHHHHhcCC--CCCCCcEEEEe
Q 003887 405 QTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSD-----AEKLPWLLEKLPG--MIDDGDVLVFA 477 (789)
Q Consensus 405 q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~-----~~k~~~L~~~L~~--~~~~~kvLVF~ 477 (789)
|+|+||||++. +.+.+.|...|+ +.+... ...+.+.+..+... .+.+..++..+.. ....+.+||||
T Consensus 220 KvILmSATid~--e~fs~~F~~apv-I~V~Gr---~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFL 293 (1294)
T PRK11131 220 KVIITSATIDP--ERFSRHFNNAPI-IEVSGR---TYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFM 293 (1294)
T ss_pred eEEEeeCCCCH--HHHHHHcCCCCE-EEEcCc---cccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEc
Confidence 99999999974 456666655554 444322 22344544443221 1122333322211 12457899999
Q ss_pred cccccHHHHHHHHHHcCCc---eeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEc--------
Q 003887 478 SKKTTVDEIESQLAQKGFK---AAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFD-------- 546 (789)
Q Consensus 478 ~s~~~a~~l~~~L~~~g~~---v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d-------- 546 (789)
+++.+++.+++.|...++. +..|||++++.+|..+++. .|..+|||||+++++|||||+|++||+++
T Consensus 294 pg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd 371 (1294)
T PRK11131 294 SGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYS 371 (1294)
T ss_pred CCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccc
Confidence 9999999999999987764 6789999999999999886 57889999999999999999999999986
Q ss_pred -------CC---CCHHHHHHHHhhcCCCCCCCeEEEEEEccccHH
Q 003887 547 -------IA---RDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581 (789)
Q Consensus 547 -------~p---~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~ 581 (789)
+| -+...|.||+|||||.+ +|.||.|++..+..
T Consensus 372 ~~~~~~~Lp~~~iSkasa~QRaGRAGR~~--~G~c~rLyte~d~~ 414 (1294)
T PRK11131 372 YRTKVQRLPIEPISQASANQRKGRCGRVS--EGICIRLYSEDDFL 414 (1294)
T ss_pred cccCcccCCeeecCHhhHhhhccccCCCC--CcEEEEeCCHHHHH
Confidence 33 35589999999999995 79999999987643
No 76
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.98 E-value=1.5e-30 Score=311.27 Aligned_cols=319 Identities=20% Similarity=0.201 Sum_probs=209.1
Q ss_pred CCCcHHHHHHHHHHHcC--CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhh
Q 003887 246 EKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~g--rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~ 323 (789)
..|.|+|..++..++.. ..+|+++++|.|||+.+.+.+ ..++.. +...++|||||+ .|+.||..++.+++
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil-~~l~~~-----g~~~rvLIVvP~-sL~~QW~~El~~kF- 222 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMII-HQQLLT-----GRAERVLILVPE-TLQHQWLVEMLRRF- 222 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHH-HHHHHc-----CCCCcEEEEcCH-HHHHHHHHHHHHHh-
Confidence 46899999999887654 479999999999999875544 333322 223469999998 89999999997654
Q ss_pred hcCcEEEEEEcCCChHHHH--HHHhcCCcEEEeCHHHHHHHHh-hccccccceeEEEEcccchhccCC-ChHHHHHHHhh
Q 003887 324 SHGIRVSAVYGGMSKLDQF--KELKAGCEIVIATPGRLIDMLK-MKALTMSRVTYLVLDEADRMFDLG-FEPQIRSIVGQ 399 (789)
Q Consensus 324 ~~~i~v~~~~gg~~~~~~~--~~l~~~~dIiV~Tp~~L~~~l~-~~~~~l~~i~~lVlDEah~m~~~~-f~~~i~~il~~ 399 (789)
++...++.++....... .......+++|||++.|...-. ...+.-..|++|||||||++.... -.......+..
T Consensus 223 --~l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~ 300 (956)
T PRK04914 223 --NLRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQ 300 (956)
T ss_pred --CCCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHH
Confidence 45544443322110000 0111236899999988764211 122223478999999999986321 11111223332
Q ss_pred c-CCCceEEEEeccCcH-HHHHH-------------------------------HHHHhC-CC----------------e
Q 003887 400 I-RPDRQTLLFSATMPR-KVEKL-------------------------------AREILS-DP----------------V 429 (789)
Q Consensus 400 ~-~~~~q~ll~SATl~~-~v~~l-------------------------------~~~~l~-~p----------------~ 429 (789)
+ .....+|++|||+-. ..+++ +..++. ++ .
T Consensus 301 La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~ 380 (956)
T PRK04914 301 LAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQD 380 (956)
T ss_pred HhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccc
Confidence 2 234578999999831 11110 000000 00 0
Q ss_pred ---------------------------------EEeecccc----CccccceEEEEe-c---------------------
Q 003887 430 ---------------------------------RVTVGEVG----MANEDITQVVHV-I--------------------- 450 (789)
Q Consensus 430 ---------------------------------~i~i~~~~----~~~~~i~q~~~~-~--------------------- 450 (789)
.+.+.... .......+.+.. +
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~ 460 (956)
T PRK04914 381 IEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLY 460 (956)
T ss_pred hhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcC
Confidence 00000000 000000011000 0
Q ss_pred --------------CCCcchHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHH-HcCCceeeccCCCCHHHHHHHHHH
Q 003887 451 --------------PSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLA-QKGFKAAALHGDKDQASRMEILQK 515 (789)
Q Consensus 451 --------------~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~-~~g~~v~~lhg~~~~~eR~~~l~~ 515 (789)
.....|..+|.++|... ...++||||+++..++.|++.|. ..|+.+..+||+|++.+|.++++.
T Consensus 461 pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~-~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~ 539 (956)
T PRK04914 461 PEQIYQEFEDNATWWNFDPRVEWLIDFLKSH-RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAY 539 (956)
T ss_pred HHHHHHHHhhhhhccccCHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHH
Confidence 01124566777777654 35699999999999999999994 679999999999999999999999
Q ss_pred hhcC--CccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEc
Q 003887 516 FKSG--VYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVT 576 (789)
Q Consensus 516 F~~G--~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~ 576 (789)
|+++ .++|||||+++++|+|++.+++|||||+|||+..|+||+||++|.|++ +.+.+++.
T Consensus 540 F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~-~~V~i~~~ 601 (956)
T PRK04914 540 FADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQK-HDIQIHVP 601 (956)
T ss_pred HhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCC-ceEEEEEc
Confidence 9984 699999999999999999999999999999999999999999999954 55444443
No 77
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=2.6e-30 Score=295.71 Aligned_cols=333 Identities=22% Similarity=0.271 Sum_probs=249.7
Q ss_pred cCCCCCcHHHHHHHHHHHc-CCCEEEEccCCChhhHHHHHHHHHHHhcC--cccccCCCCEEEEEcCcHHHHHHHHHHHH
Q 003887 243 QGYEKPTSIQCQALPIILS-GRDIIGIAKTGSGKTAAFVLPMIVHIMDQ--PELQKEEGPIGVICAPTRELAHQIYLETK 319 (789)
Q Consensus 243 ~g~~~ptpiQ~~ai~~il~-grdvl~~a~TGsGKTla~llp~l~~l~~~--~~~~~~~gp~vLIl~PTreLa~Qi~~~~~ 319 (789)
.+|..+..+|..++|.++. ..|+|||||||+|||..|+|.+|+.+.++ .-....+.-++++|+|+++||..+++.+.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 3567889999999999985 57999999999999999999999988752 12223457789999999999999999999
Q ss_pred HHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhc---cccccceeEEEEcccchhccCCChHHHHHH
Q 003887 320 KFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK---ALTMSRVTYLVLDEADRMFDLGFEPQIRSI 396 (789)
Q Consensus 320 k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~---~~~l~~i~~lVlDEah~m~~~~f~~~i~~i 396 (789)
+-+...|+.|..++|....... + ...++|||+||+.+--.-++. ...++.+.+|||||+|.+-+. .++.++.|
T Consensus 186 kkl~~~gi~v~ELTGD~ql~~t--e-i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGpvlEti 261 (1230)
T KOG0952|consen 186 KKLAPLGISVRELTGDTQLTKT--E-IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGPVLETI 261 (1230)
T ss_pred hhcccccceEEEecCcchhhHH--H-HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCc-ccchHHHH
Confidence 8888889999999998765443 2 234999999999974332221 123567999999999976554 57777777
Q ss_pred Hhhc-------CCCceEEEEeccCcHHHHHHHHHHhCCCe-EEeeccccCccccceEEEEecCCCc----------chHH
Q 003887 397 VGQI-------RPDRQTLLFSATMPRKVEKLAREILSDPV-RVTVGEVGMANEDITQVVHVIPSDA----------EKLP 458 (789)
Q Consensus 397 l~~~-------~~~~q~ll~SATl~~~v~~l~~~~l~~p~-~i~i~~~~~~~~~i~q~~~~~~~~~----------~k~~ 458 (789)
+.+. ....++|++|||+|+ +++++.++-.+|. -+...........+.+.+.-+.... ....
T Consensus 262 VaRtlr~vessqs~IRivgLSATlPN-~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~ 340 (1230)
T KOG0952|consen 262 VARTLRLVESSQSMIRIVGLSATLPN-YEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYD 340 (1230)
T ss_pred HHHHHHHHHhhhhheEEEEeeccCCC-HHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHH
Confidence 6654 356789999999984 5788888766632 2222233344445566655444321 1122
Q ss_pred HHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHc-----------------------CCceeeccCCCCHHHHHHHHHH
Q 003887 459 WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK-----------------------GFKAAALHGDKDQASRMEILQK 515 (789)
Q Consensus 459 ~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~-----------------------g~~v~~lhg~~~~~eR~~~l~~ 515 (789)
.+.+.+. .+.++||||.++....+.++.|.+. ...+..+|.+|...+|..+...
T Consensus 341 kv~e~~~---~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~ 417 (1230)
T KOG0952|consen 341 KVVEFLQ---EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKE 417 (1230)
T ss_pred HHHHHHH---cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHH
Confidence 2333333 4669999999999999999888753 1347889999999999999999
Q ss_pred hhcCCccEEEeehhhhccCCCCCccEEE----EEcCCC------CHHHHHHHHhhcCCCC-CCCeEEEEEEccccHHHH
Q 003887 516 FKSGVYHVLIATDVAARGLDIKSIKSVV----NFDIAR------DMDMHVHRIGRTGRAG-DKDGTAYTLVTQKEARFA 583 (789)
Q Consensus 516 F~~G~~~VLVaT~v~~~GlDI~~v~~VI----~~d~p~------s~~~y~QriGR~gR~G-~~~G~~i~l~~~~d~~~~ 583 (789)
|..|.++||+||..+++|+|+|.-.++| .||.-. .+.+.+|.+||+||.. ...|.++++.+.+-...+
T Consensus 418 F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y 496 (1230)
T KOG0952|consen 418 FKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHY 496 (1230)
T ss_pred HhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHH
Confidence 9999999999999999999999755555 255443 5778899999999998 556888877766544433
No 78
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.97 E-value=8.8e-30 Score=304.31 Aligned_cols=334 Identities=23% Similarity=0.333 Sum_probs=254.7
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHH
Q 003887 233 STQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAH 312 (789)
Q Consensus 233 ~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~ 312 (789)
...+..++.+.|...|+++|.+|+..+.+|+|+|++.+||||||.+|++|++.+++..+. -++|+|-||++||+
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~------a~AL~lYPtnALa~ 129 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPS------ARALLLYPTNALAN 129 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcC------ccEEEEechhhhHh
Confidence 344577888889999999999999999999999999999999999999999999988753 26899999999999
Q ss_pred HHHHHHHHHhhhcC--cEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhcc----ccccceeEEEEcccchhcc
Q 003887 313 QIYLETKKFAKSHG--IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKA----LTMSRVTYLVLDEADRMFD 386 (789)
Q Consensus 313 Qi~~~~~k~~~~~~--i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~----~~l~~i~~lVlDEah~m~~ 386 (789)
...+.++++....+ +++..+.|.....+...-+...++||+++|.+|..++.+.. ..+.++++|||||+|.+-.
T Consensus 130 DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrG 209 (851)
T COG1205 130 DQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRG 209 (851)
T ss_pred hHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccc
Confidence 99999999998777 77777777766665545566789999999999988665432 3467799999999996532
Q ss_pred CCChHHHH----HHH---hhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecC-C------
Q 003887 387 LGFEPQIR----SIV---GQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIP-S------ 452 (789)
Q Consensus 387 ~~f~~~i~----~il---~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~-~------ 452 (789)
. |...+- .++ .......|+|..|||+.+. .+.+..+.+......+............. ..-+ .
T Consensus 210 v-~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~g~~~~~~~~~-~~~p~~~~~~~~ 286 (851)
T COG1205 210 V-QGSEVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVDEDGSPRGLRYFV-RREPPIRELAES 286 (851)
T ss_pred c-chhHHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeeccCCCCCCCceEEE-EeCCcchhhhhh
Confidence 2 333333 333 3334578999999998755 45677777766655443333332222222 2221 0
Q ss_pred -CcchHHHHHHhcCCCC-CCCcEEEEecccccHHHHH----HHHHHcC----CceeeccCCCCHHHHHHHHHHhhcCCcc
Q 003887 453 -DAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIE----SQLAQKG----FKAAALHGDKDQASRMEILQKFKSGVYH 522 (789)
Q Consensus 453 -~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~----~~L~~~g----~~v~~lhg~~~~~eR~~~l~~F~~G~~~ 522 (789)
...+...+..++.... .+-++|+|+.+...++.+. ..+...+ ..+..+++++...+|.++...|+.|+..
T Consensus 287 ~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~ 366 (851)
T COG1205 287 IRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELL 366 (851)
T ss_pred cccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCcc
Confidence 1122222222222222 3459999999999999987 4555555 6789999999999999999999999999
Q ss_pred EEEeehhhhccCCCCCccEEEEEcCCC-CHHHHHHHHhhcCCCCCCCeEEEEEEc
Q 003887 523 VLIATDVAARGLDIKSIKSVVNFDIAR-DMDMHVHRIGRTGRAGDKDGTAYTLVT 576 (789)
Q Consensus 523 VLVaT~v~~~GlDI~~v~~VI~~d~p~-s~~~y~QriGR~gR~G~~~G~~i~l~~ 576 (789)
++++|.+++-|+||-.+..||++..|. +...++||.||+||.+ +.+..+.+..
T Consensus 367 ~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~-~~~l~~~v~~ 420 (851)
T COG1205 367 GVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRG-QESLVLVVLR 420 (851)
T ss_pred EEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCC-CCceEEEEeC
Confidence 999999999999999999999999999 8999999999999998 4455554443
No 79
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.97 E-value=6.3e-30 Score=267.59 Aligned_cols=335 Identities=21% Similarity=0.309 Sum_probs=245.7
Q ss_pred HHHHHHHHc-CCCCC-cHHHHHHHHHHHcC-CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHH
Q 003887 235 QLMHAISKQ-GYEKP-TSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (789)
Q Consensus 235 ~l~~~l~~~-g~~~p-tpiQ~~ai~~il~g-rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa 311 (789)
.+.+.|++. |+.++ ++.|.+|+..+..+ +|+.+++|||+||+++|.||.|.+ +.+.||+.|..+|.
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----------~gITIV~SPLiALI 74 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----------GGITIVISPLIALI 74 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----------CCeEEEehHHHHHH
Confidence 345566654 55543 79999999998866 799999999999999999999986 34789999999999
Q ss_pred HHHHHHHHHHhhhcCcEEEEEEcCCChHHH---HHHH---hcCCcEEEeCHHHHHH-----HHhhccccccceeEEEEcc
Q 003887 312 HQIYLETKKFAKSHGIRVSAVYGGMSKLDQ---FKEL---KAGCEIVIATPGRLID-----MLKMKALTMSRVTYLVLDE 380 (789)
Q Consensus 312 ~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~---~~~l---~~~~dIiV~Tp~~L~~-----~l~~~~~~l~~i~~lVlDE 380 (789)
......+.++ .+++..+....+..+. +..| +....|+..||+.-.. +| +...+-.-+.|+||||
T Consensus 75 kDQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lL-n~L~~r~~L~Y~vVDE 149 (641)
T KOG0352|consen 75 KDQIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLL-NGLANRDVLRYIVVDE 149 (641)
T ss_pred HHHHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHH-HHHhhhceeeeEEech
Confidence 8887777776 5555555555444332 2223 2357899999987532 22 1222334578999999
Q ss_pred cchhccCC--ChHHHHHH--HhhcCCCceEEEEeccCcHHHHHHHHHH--hCCCeEEeeccccCccccceEEEEecCCCc
Q 003887 381 ADRMFDLG--FEPQIRSI--VGQIRPDRQTLLFSATMPRKVEKLAREI--LSDPVRVTVGEVGMANEDITQVVHVIPSDA 454 (789)
Q Consensus 381 ah~m~~~~--f~~~i~~i--l~~~~~~~q~ll~SATl~~~v~~l~~~~--l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~ 454 (789)
||.+..|| |.+.+..+ |...-++...+.+|||..+.+++-+-.- +.+|+.+.- .+.-..++..-+.+-..-.
T Consensus 150 AHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFk--TP~FR~NLFYD~~~K~~I~ 227 (641)
T KOG0352|consen 150 AHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFK--TPTFRDNLFYDNHMKSFIT 227 (641)
T ss_pred hhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhcc--CcchhhhhhHHHHHHHHhh
Confidence 99999997 66666543 3333457789999999999887755443 455654332 2211111111000000001
Q ss_pred chHHHHHHh----cCC--------CCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcc
Q 003887 455 EKLPWLLEK----LPG--------MIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYH 522 (789)
Q Consensus 455 ~k~~~L~~~----L~~--------~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~ 522 (789)
+-+..|.+. |.. ....|--||||.|++.|++++-.|...|++...+|.++...+|.++-+.|+++++.
T Consensus 228 D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~P 307 (641)
T KOG0352|consen 228 DCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIP 307 (641)
T ss_pred hHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCC
Confidence 111122111 210 00123579999999999999999999999999999999999999999999999999
Q ss_pred EEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHH
Q 003887 523 VLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVN 588 (789)
Q Consensus 523 VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~ 588 (789)
||+||...++|+|-|+|+.||++++|.|+.-|.|-.||+||.| ++..|-++++.+|...+.-|+.
T Consensus 308 vI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDG-k~SyCRLYYsR~D~~~i~FLi~ 372 (641)
T KOG0352|consen 308 VIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDG-KRSYCRLYYSRQDKNALNFLVS 372 (641)
T ss_pred EEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCC-CccceeeeecccchHHHHHHHh
Confidence 9999999999999999999999999999999999999999999 7899999999998877665543
No 80
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.97 E-value=1.4e-29 Score=300.25 Aligned_cols=328 Identities=20% Similarity=0.285 Sum_probs=261.5
Q ss_pred HHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHH
Q 003887 240 ISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETK 319 (789)
Q Consensus 240 l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~ 319 (789)
....|...++|-|.++|..++.|+|+++.+|||.||+++|.||++.. ++..|||.|...|++.....+.
T Consensus 257 ~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~-----------~gitvVISPL~SLm~DQv~~L~ 325 (941)
T KOG0351|consen 257 KEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL-----------GGVTVVISPLISLMQDQVTHLS 325 (941)
T ss_pred HHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc-----------CCceEEeccHHHHHHHHHHhhh
Confidence 34568899999999999999999999999999999999999998754 4578999999999976654443
Q ss_pred HHhhhcCcEEEEEEcCCChHHH---HHHHhcC---CcEEEeCHHHHHHHH--hhccccccc---eeEEEEcccchhccCC
Q 003887 320 KFAKSHGIRVSAVYGGMSKLDQ---FKELKAG---CEIVIATPGRLIDML--KMKALTMSR---VTYLVLDEADRMFDLG 388 (789)
Q Consensus 320 k~~~~~~i~v~~~~gg~~~~~~---~~~l~~~---~dIiV~Tp~~L~~~l--~~~~~~l~~---i~~lVlDEah~m~~~~ 388 (789)
+ .++....+.++....++ ++.+..+ ++|+..||+.+...- ......|.. +.++||||||....|+
T Consensus 326 ~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWg 401 (941)
T KOG0351|consen 326 K----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWG 401 (941)
T ss_pred h----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhc
Confidence 3 48999999998887644 3344444 899999999986432 222333444 8999999999999997
Q ss_pred --ChHHHHHHHhh--cCCCceEEEEeccCcHHHHHHHHHHhC--CCeEEeeccccCccccceEEEEecCCC-cchHHHHH
Q 003887 389 --FEPQIRSIVGQ--IRPDRQTLLFSATMPRKVEKLAREILS--DPVRVTVGEVGMANEDITQVVHVIPSD-AEKLPWLL 461 (789)
Q Consensus 389 --f~~~i~~il~~--~~~~~q~ll~SATl~~~v~~l~~~~l~--~p~~i~i~~~~~~~~~i~q~~~~~~~~-~~k~~~L~ 461 (789)
|.+.++.+... --+...+|.+|||.+..++.-+...++ +|..+. ......++...+ .... ......++
T Consensus 402 HdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~---~sfnR~NL~yeV--~~k~~~~~~~~~~ 476 (941)
T KOG0351|consen 402 HDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFK---SSFNRPNLKYEV--SPKTDKDALLDIL 476 (941)
T ss_pred ccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceec---ccCCCCCceEEE--EeccCccchHHHH
Confidence 77776654322 223478999999998888766665554 343221 122233333322 2222 34455566
Q ss_pred HhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccE
Q 003887 462 EKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKS 541 (789)
Q Consensus 462 ~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~ 541 (789)
..+.........||||.++.+|+.++..|...++.+..+|.+|+..+|..+...|..++++|+|||=++++|||.|+|+.
T Consensus 477 ~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ 556 (941)
T KOG0351|consen 477 EESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRF 556 (941)
T ss_pred HHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeE
Confidence 66777777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHH
Q 003887 542 VVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVN 588 (789)
Q Consensus 542 VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~ 588 (789)
||+|.+|.+.+.|.|-+||+||.| ....|++|+...|...+..++.
T Consensus 557 ViH~~lPks~E~YYQE~GRAGRDG-~~s~C~l~y~~~D~~~l~~ll~ 602 (941)
T KOG0351|consen 557 VIHYSLPKSFEGYYQEAGRAGRDG-LPSSCVLLYGYADISELRRLLT 602 (941)
T ss_pred EEECCCchhHHHHHHhccccCcCC-CcceeEEecchhHHHHHHHHHH
Confidence 999999999999999999999999 6899999999988776665554
No 81
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=1.4e-29 Score=307.85 Aligned_cols=304 Identities=20% Similarity=0.304 Sum_probs=215.2
Q ss_pred HHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEE
Q 003887 253 CQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAV 332 (789)
Q Consensus 253 ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~ 332 (789)
.+.+..+.+++.+|++|+||||||++ +|.+...... ....++++.-|.|..|..++..+.+.. +..+...
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~~-----~~~~~I~~tQPRRlAA~svA~RvA~el---g~~lG~~ 142 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELGR-----GSHGLIGHTQPRRLAARTVAQRIAEEL---GTPLGEK 142 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcCC-----CCCceEecCCccHHHHHHHHHHHHHHh---CCCcceE
Confidence 34566666778889999999999985 6765443221 112356677899888877765555443 4444444
Q ss_pred EcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccc-hhccCCChHH-HHHHHhhcCCCceEEEEe
Q 003887 333 YGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD-RMFDLGFEPQ-IRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 333 ~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah-~m~~~~f~~~-i~~il~~~~~~~q~ll~S 410 (789)
+|.....+. .......|+|+|+|+|+..+.... .|..+++||||||| ++++.+|.-. +..++. .+++.|+|+||
T Consensus 143 VGY~vR~~~--~~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~-~rpdLKlIlmS 218 (1283)
T TIGR01967 143 VGYKVRFHD--QVSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLP-RRPDLKIIITS 218 (1283)
T ss_pred EeeEEcCCc--ccCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHh-hCCCCeEEEEe
Confidence 443221111 112357899999999999886654 48999999999999 6999988765 444443 45789999999
Q ss_pred ccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCC-----cchHHHHHHhcCCC--CCCCcEEEEecccccH
Q 003887 411 ATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSD-----AEKLPWLLEKLPGM--IDDGDVLVFASKKTTV 483 (789)
Q Consensus 411 ATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~-----~~k~~~L~~~L~~~--~~~~kvLVF~~s~~~a 483 (789)
||+.. ..+.+.|...|+ +.+... ...+...+..+... ..+...+...+... ...+.+|||++++.++
T Consensus 219 ATld~--~~fa~~F~~apv-I~V~Gr---~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI 292 (1283)
T TIGR01967 219 ATIDP--ERFSRHFNNAPI-IEVSGR---TYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREI 292 (1283)
T ss_pred CCcCH--HHHHHHhcCCCE-EEECCC---cccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHH
Confidence 99964 456666655554 333221 22333333332211 12223333322211 1457999999999999
Q ss_pred HHHHHHHHHcC---CceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEcCC------------
Q 003887 484 DEIESQLAQKG---FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIA------------ 548 (789)
Q Consensus 484 ~~l~~~L~~~g---~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p------------ 548 (789)
+.+++.|...+ +.+..|||+|++.+|.+++..+ +..+|||||+++++|||||+|++||+++.+
T Consensus 293 ~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~ 370 (1283)
T TIGR01967 293 RDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQ 370 (1283)
T ss_pred HHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCcc
Confidence 99999998864 4588999999999999997654 346899999999999999999999998854
Q ss_pred ------CCHHHHHHHHhhcCCCCCCCeEEEEEEccccH
Q 003887 549 ------RDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (789)
Q Consensus 549 ------~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~ 580 (789)
-+...|.||.||+||.+ +|.||.|++..+.
T Consensus 371 ~L~~~~ISkasa~QRaGRAGR~~--~G~cyRLyte~~~ 406 (1283)
T TIGR01967 371 RLPIEPISQASANQRKGRCGRVA--PGICIRLYSEEDF 406 (1283)
T ss_pred ccCCccCCHHHHHHHhhhhCCCC--CceEEEecCHHHH
Confidence 35679999999999998 7999999997654
No 82
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.97 E-value=1.2e-29 Score=281.89 Aligned_cols=317 Identities=21% Similarity=0.352 Sum_probs=233.7
Q ss_pred CCCcHHHHHHHHHHH----cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003887 246 EKPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il----~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~ 321 (789)
-.+++||.+++.|+. +|-++|+..+||.|||++ .|.+|.++.... ...||. |||||...|. +|.+++++|
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~---~~~GPf-LVi~P~StL~-NW~~Ef~rf 239 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRK---GIPGPF-LVIAPKSTLD-NWMNEFKRF 239 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhc---CCCCCe-EEEeeHhhHH-HHHHHHHHh
Confidence 368999999999986 567899999999999998 566777775432 234776 8999998877 799999999
Q ss_pred hhhcCcEEEEEEcCCChHHHH-HHH--hcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHh
Q 003887 322 AKSHGIRVSAVYGGMSKLDQF-KEL--KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVG 398 (789)
Q Consensus 322 ~~~~~i~v~~~~gg~~~~~~~-~~l--~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~ 398 (789)
++ ++++++++|.......+ +.+ ....+|+|+|++..+.. +..+.--.|.||||||||||.+.. ..+..++.
T Consensus 240 ~P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~~--s~L~~~lr 313 (971)
T KOG0385|consen 240 TP--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNEK--SKLSKILR 313 (971)
T ss_pred CC--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcchh--hHHHHHHH
Confidence 98 78999999876443322 222 23589999999988764 333344478999999999998753 34456666
Q ss_pred hcCCCceEEEEecc-CcHHHHHH---------------------------------------------------------
Q 003887 399 QIRPDRQTLLFSAT-MPRKVEKL--------------------------------------------------------- 420 (789)
Q Consensus 399 ~~~~~~q~ll~SAT-l~~~v~~l--------------------------------------------------------- 420 (789)
.+....+ |++|.| +.+++.+|
T Consensus 314 ~f~~~nr-LLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sL 392 (971)
T KOG0385|consen 314 EFKTDNR-LLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSL 392 (971)
T ss_pred Hhcccce-eEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcC
Confidence 6654444 445555 44433333
Q ss_pred ------------------------------------------------HHHHhCCCeEEeeccccCccccceEEEEecCC
Q 003887 421 ------------------------------------------------AREILSDPVRVTVGEVGMANEDITQVVHVIPS 452 (789)
Q Consensus 421 ------------------------------------------------~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~ 452 (789)
++++|.+|..+.-...+ +..+.- ..+-.
T Consensus 393 ppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg---~pyttd-ehLv~ 468 (971)
T KOG0385|consen 393 PPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPG---PPYTTD-EHLVT 468 (971)
T ss_pred CCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCC---CCCCcc-hHHHh
Confidence 22223333332221110 000000 01112
Q ss_pred CcchHHHHHHhcCCCCCC-CcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcC---CccEEEeeh
Q 003887 453 DAEKLPWLLEKLPGMIDD-GDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSG---VYHVLIATD 528 (789)
Q Consensus 453 ~~~k~~~L~~~L~~~~~~-~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G---~~~VLVaT~ 528 (789)
...|+..|..+|..+... .+||||.+.....+.|.+++.-.+|.++.|.|.++.++|..+|+.|... ..-+|++|.
T Consensus 469 nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTR 548 (971)
T KOG0385|consen 469 NSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTR 548 (971)
T ss_pred cCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecc
Confidence 456766666666665544 4999999999999999999999999999999999999999999999764 456899999
Q ss_pred hhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCC-CeEEEEEEcccc
Q 003887 529 VAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDK-DGTAYTLVTQKE 579 (789)
Q Consensus 529 v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~-~G~~i~l~~~~d 579 (789)
+++.|||+..+++||.||..|||..-+|+..||+|+|++ +-.+|.|++.+-
T Consensus 549 AGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitent 600 (971)
T KOG0385|consen 549 AGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENT 600 (971)
T ss_pred ccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccch
Confidence 999999999999999999999999999999999999965 456777888763
No 83
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.97 E-value=2e-28 Score=289.57 Aligned_cols=314 Identities=19% Similarity=0.257 Sum_probs=219.1
Q ss_pred CCCcHHHHHHHHHHHcC---CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHh
Q 003887 246 EKPTSIQCQALPIILSG---RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~g---rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~ 322 (789)
..||++|.++++.++.+ +++++.++||||||.+|+.++...+. .+.++|||+||++|+.|+++.+++.+
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~--------~g~~vLvLvPt~~L~~Q~~~~l~~~f 214 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA--------QGKQALVLVPEIALTPQMLARFRARF 214 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH--------cCCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 36899999999999874 78999999999999999887766652 25679999999999999999988764
Q ss_pred hhcCcEEEEEEcCCChHHHHH---HHhc-CCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCC---hHHHH-
Q 003887 323 KSHGIRVSAVYGGMSKLDQFK---ELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGF---EPQIR- 394 (789)
Q Consensus 323 ~~~~i~v~~~~gg~~~~~~~~---~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f---~~~i~- 394 (789)
+..+..++|+.+..+... .+.. ..+|||+|+..+. ..+.++.+|||||+|...-+.. ....+
T Consensus 215 ---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~ 284 (679)
T PRK05580 215 ---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARD 284 (679)
T ss_pred ---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHH
Confidence 678899999987655433 3333 4799999998764 3578899999999997543221 11112
Q ss_pred -HHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeecccc--CccccceEEEEecC---C-C-cchHHHHHHhcCC
Q 003887 395 -SIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVG--MANEDITQVVHVIP---S-D-AEKLPWLLEKLPG 466 (789)
Q Consensus 395 -~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~--~~~~~i~q~~~~~~---~-~-~~k~~~L~~~L~~ 466 (789)
.++.....+.++|++|||++.+....+. -+....+...... .....+ ..+..-. . . ..-...|++.+.+
T Consensus 285 va~~ra~~~~~~~il~SATps~~s~~~~~--~g~~~~~~l~~r~~~~~~p~v-~~id~~~~~~~~~~~~ls~~l~~~i~~ 361 (679)
T PRK05580 285 LAVVRAKLENIPVVLGSATPSLESLANAQ--QGRYRLLRLTKRAGGARLPEV-EIIDMRELLRGENGSFLSPPLLEAIKQ 361 (679)
T ss_pred HHHHHhhccCCCEEEEcCCCCHHHHHHHh--ccceeEEEeccccccCCCCeE-EEEechhhhhhcccCCCCHHHHHHHHH
Confidence 2233345678999999998755443332 1222222222111 111111 1111100 0 0 0011334444544
Q ss_pred CCCC-CcEEEEecccc------------------------------------------------------------cHHH
Q 003887 467 MIDD-GDVLVFASKKT------------------------------------------------------------TVDE 485 (789)
Q Consensus 467 ~~~~-~kvLVF~~s~~------------------------------------------------------------~a~~ 485 (789)
.+.. .++|||+|++. .++.
T Consensus 362 ~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~ 441 (679)
T PRK05580 362 RLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTER 441 (679)
T ss_pred HHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHH
Confidence 4433 47888887521 3467
Q ss_pred HHHHHHHc--CCceeeccCCCCH--HHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEcCC--CC---------
Q 003887 486 IESQLAQK--GFKAAALHGDKDQ--ASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIA--RD--------- 550 (789)
Q Consensus 486 l~~~L~~~--g~~v~~lhg~~~~--~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p--~s--------- 550 (789)
+++.|.+. +.++..+|+++.+ .+++.+++.|++|+.+|||+|+++++|+|+|++++|+.+|.. .+
T Consensus 442 ~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er 521 (679)
T PRK05580 442 LEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASER 521 (679)
T ss_pred HHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHH
Confidence 78888775 7889999999974 678999999999999999999999999999999999766543 32
Q ss_pred -HHHHHHHHhhcCCCCCCCeEEEEEEccccHH
Q 003887 551 -MDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581 (789)
Q Consensus 551 -~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~ 581 (789)
...|+|++||+||.+ +.|.+++.....+..
T Consensus 522 ~~~~l~q~~GRagR~~-~~g~viiqT~~p~~~ 552 (679)
T PRK05580 522 TFQLLTQVAGRAGRAE-KPGEVLIQTYHPEHP 552 (679)
T ss_pred HHHHHHHHHhhccCCC-CCCEEEEEeCCCCCH
Confidence 367899999999987 679998766554443
No 84
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=3.2e-28 Score=286.65 Aligned_cols=403 Identities=20% Similarity=0.240 Sum_probs=293.4
Q ss_pred ChhccCCCHHHHHHHHHHcCccccc--CCC-----CCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHc----
Q 003887 193 SASISGMSEQDVMEYKKSLAIRVSG--FDV-----PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILS---- 261 (789)
Q Consensus 193 ~~~i~~~s~~~~~~~r~~~~i~v~~--~~~-----P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~---- 261 (789)
.+.+.+|....|...|.+..-.+.. ..+ -+....=-.+..+..+.+.+...---.-||-|..||..+..
T Consensus 533 ~p~L~kLG~~~W~k~K~K~~~~v~diA~eLi~lyA~R~~~~G~af~~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~ 612 (1139)
T COG1197 533 APKLHKLGGGAWKKAKAKARKKVRDIAAELIKLYAKRQAKKGFAFPPDTEWQEEFEASFPYEETPDQLKAIEEVKRDMES 612 (1139)
T ss_pred CccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhcc
Confidence 3457788888999888765322210 000 00011111234455666666654223579999999999874
Q ss_pred C--CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChH
Q 003887 262 G--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (789)
Q Consensus 262 g--rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~ 339 (789)
+ .|-|+|+..|-|||-+++-+++..+ .+|++|.|||||.-||+|+++.++..+..+.+++..+.--.+..
T Consensus 613 ~kpMDRLiCGDVGFGKTEVAmRAAFkAV--------~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~k 684 (1139)
T COG1197 613 GKPMDRLICGDVGFGKTEVAMRAAFKAV--------MDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAK 684 (1139)
T ss_pred CCcchheeecCcCCcHHHHHHHHHHHHh--------cCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHH
Confidence 3 5889999999999999999988887 44788999999999999999999999999999998887666655
Q ss_pred HHH---HHHhcC-CcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEeccCcH
Q 003887 340 DQF---KELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPR 415 (789)
Q Consensus 340 ~~~---~~l~~~-~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~ 415 (789)
++. +.++.| .||||+|+.-| .+.+.+.++.+|||||-|+ |+..-..-+..++.+..+|-||||+-|
T Consensus 685 E~~~il~~la~G~vDIvIGTHrLL-----~kdv~FkdLGLlIIDEEqR-----FGVk~KEkLK~Lr~~VDvLTLSATPIP 754 (1139)
T COG1197 685 EQKEILKGLAEGKVDIVIGTHRLL-----SKDVKFKDLGLLIIDEEQR-----FGVKHKEKLKELRANVDVLTLSATPIP 754 (1139)
T ss_pred HHHHHHHHHhcCCccEEEechHhh-----CCCcEEecCCeEEEechhh-----cCccHHHHHHHHhccCcEEEeeCCCCc
Confidence 543 344444 89999996443 4466788999999999999 777788888888999999999999655
Q ss_pred HHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHc--
Q 003887 416 KVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK-- 493 (789)
Q Consensus 416 ~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~-- 493 (789)
..-.++-.-+++...|. ..+.....|...+....... -.. .++++...+|++...+|.++..+.++..|++.
T Consensus 755 RTL~Msm~GiRdlSvI~--TPP~~R~pV~T~V~~~d~~~-ire---AI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVP 828 (1139)
T COG1197 755 RTLNMSLSGIRDLSVIA--TPPEDRLPVKTFVSEYDDLL-IRE---AILRELLRGGQVFYVHNRVESIEKKAERLRELVP 828 (1139)
T ss_pred chHHHHHhcchhhhhcc--CCCCCCcceEEEEecCChHH-HHH---HHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCC
Confidence 54445444444433332 22333344444433332111 112 23334446899999999999999999999886
Q ss_pred CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEcCCCC-HHHHHHHHhhcCCCCCCCeEEE
Q 003887 494 GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARD-MDMHVHRIGRTGRAGDKDGTAY 572 (789)
Q Consensus 494 g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s-~~~y~QriGR~gR~G~~~G~~i 572 (789)
..++++.||.|+..+-++++..|.+|+++|||||.+++.|||||+++++|+-+...- ..+..|.-||+||.. +.+.||
T Consensus 829 EarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~-~~AYAY 907 (1139)
T COG1197 829 EARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSN-KQAYAY 907 (1139)
T ss_pred ceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCcc-ceEEEE
Confidence 457999999999999999999999999999999999999999999999998887764 455566679999997 789999
Q ss_pred EEEcccc--HHHHHHHHHHH---HHcCCCccHHHHHHHHhcCcccccccccCCCCCCCCCCCCC
Q 003887 573 TLVTQKE--ARFAGELVNSL---IAAGQNVSMELMDLAMKDGRFRSKRDARKGGGKKGKGRGGA 631 (789)
Q Consensus 573 ~l~~~~d--~~~~~~l~~~L---~~~~~~vp~~l~~~a~~~~~~~~~~~~r~~g~~~g~g~ggg 631 (789)
.++.+.. .+.+.+.++.+ ..-|..+-.++.|+.. |+.|...|..+.|.
T Consensus 908 fl~p~~k~lT~~A~kRL~aI~~~~~LGaGf~lA~~DLeI-----------RGaGNlLG~eQSG~ 960 (1139)
T COG1197 908 FLYPPQKALTEDAEKRLEAIASFTELGAGFKLAMHDLEI-----------RGAGNLLGEEQSGH 960 (1139)
T ss_pred EeecCccccCHHHHHHHHHHHhhhhcCchHHHHhcchhc-----------cccccccCccccCc
Confidence 9988642 33444444444 4455666656666655 67778888777664
No 85
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=7.2e-29 Score=252.42 Aligned_cols=202 Identities=54% Similarity=0.880 Sum_probs=186.0
Q ss_pred cccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcC
Q 003887 227 FEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP 306 (789)
Q Consensus 227 f~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~P 306 (789)
|+++++++.+.+.+.+.++..|+++|.++++.++++++++++++||+|||++|++|++.++...+ ...++++||++|
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~---~~~~~~viii~p 77 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP---KKDGPQALILAP 77 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc---ccCCceEEEEcC
Confidence 67889999999999999999999999999999999999999999999999999999999987653 135789999999
Q ss_pred cHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhcc
Q 003887 307 TRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD 386 (789)
Q Consensus 307 TreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~ 386 (789)
|++|+.|+...++.+....++.+..++|+.........+..+++|+|+||+.|.+++.+....+..+++||+||||.+.+
T Consensus 78 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~ 157 (203)
T cd00268 78 TRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLD 157 (203)
T ss_pred CHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhc
Confidence 99999999999999988778999999999988777777766899999999999999988888889999999999999999
Q ss_pred CCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEE
Q 003887 387 LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRV 431 (789)
Q Consensus 387 ~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i 431 (789)
.++...+..++..++..+|++++|||+++.+..++..++.+|+.+
T Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 158 MGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred cChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 999999999999999999999999999999999999999998765
No 86
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.97 E-value=5.9e-29 Score=298.50 Aligned_cols=320 Identities=18% Similarity=0.273 Sum_probs=220.4
Q ss_pred CCCcHHHHHHHHHHH----cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003887 246 EKPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il----~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~ 321 (789)
.+++|||.+++.|++ ++.++|++.+||.|||++. +.++.++.... .....+|||||. .|..||.+++.+|
T Consensus 168 ~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQa-IalL~~L~~~~----~~~gp~LIVvP~-SlL~nW~~Ei~kw 241 (1033)
T PLN03142 168 GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQT-ISLLGYLHEYR----GITGPHMVVAPK-STLGNWMNEIRRF 241 (1033)
T ss_pred cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHH-HHHHHHHHHhc----CCCCCEEEEeCh-HHHHHHHHHHHHH
Confidence 378999999999986 5788999999999999984 45555554321 112336999997 6677999999999
Q ss_pred hhhcCcEEEEEEcCCChHHHHHH--H-hcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHh
Q 003887 322 AKSHGIRVSAVYGGMSKLDQFKE--L-KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVG 398 (789)
Q Consensus 322 ~~~~~i~v~~~~gg~~~~~~~~~--l-~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~ 398 (789)
+. .++++.++|.......... + ...++|||+|++.+.... ..+.-..|.+|||||||+|.+. ...+..++.
T Consensus 242 ~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~--~~L~k~~W~~VIvDEAHrIKN~--~Sklskalr 315 (1033)
T PLN03142 242 CP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEK--TALKRFSWRYIIIDEAHRIKNE--NSLLSKTMR 315 (1033)
T ss_pred CC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHH--HHhccCCCCEEEEcCccccCCH--HHHHHHHHH
Confidence 86 5677777775443322221 1 235899999999987643 2333346889999999998764 334555555
Q ss_pred hcCCCceEEEEeccC-cHHHHHHHHH---HhCC--------------------------------CeEEee--ccccCcc
Q 003887 399 QIRPDRQTLLFSATM-PRKVEKLARE---ILSD--------------------------------PVRVTV--GEVGMAN 440 (789)
Q Consensus 399 ~~~~~~q~ll~SATl-~~~v~~l~~~---~l~~--------------------------------p~~i~i--~~~~~~~ 440 (789)
.+.. ...+++|+|+ .+.+.++... +..+ |..+.. .......
T Consensus 316 ~L~a-~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~L 394 (1033)
T PLN03142 316 LFST-NYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGL 394 (1033)
T ss_pred Hhhc-CcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhC
Confidence 5553 3457889996 2333222110 0000 000000 0000000
Q ss_pred ccceEEEEec--------------------------------------------------------------CCCcchHH
Q 003887 441 EDITQVVHVI--------------------------------------------------------------PSDAEKLP 458 (789)
Q Consensus 441 ~~i~q~~~~~--------------------------------------------------------------~~~~~k~~ 458 (789)
+.....+..+ .....|+.
T Consensus 395 PpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~ 474 (1033)
T PLN03142 395 PPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMV 474 (1033)
T ss_pred CCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHH
Confidence 0000000000 01234555
Q ss_pred HHHHhcCCCC-CCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcC---CccEEEeehhhhccC
Q 003887 459 WLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSG---VYHVLIATDVAARGL 534 (789)
Q Consensus 459 ~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G---~~~VLVaT~v~~~Gl 534 (789)
.|..+|..+. .+.+||||++....++.|.++|...++.+..|||+++..+|..+++.|++. ...+||+|.+++.||
T Consensus 475 lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGI 554 (1033)
T PLN03142 475 LLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGI 554 (1033)
T ss_pred HHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCC
Confidence 5555554433 345999999999999999999999999999999999999999999999763 346799999999999
Q ss_pred CCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCe-EEEEEEccc
Q 003887 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDG-TAYTLVTQK 578 (789)
Q Consensus 535 DI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G-~~i~l~~~~ 578 (789)
|+..+++||+||++|||..+.|++||++|.|++.. .+|.|++..
T Consensus 555 NLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 555 NLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEY 599 (1033)
T ss_pred chhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCC
Confidence 99999999999999999999999999999996544 466777765
No 87
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.96 E-value=1.2e-27 Score=246.75 Aligned_cols=336 Identities=19% Similarity=0.315 Sum_probs=258.8
Q ss_pred cCCCCHHHHHHHHHc-CCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCc
Q 003887 229 DCGFSTQLMHAISKQ-GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (789)
Q Consensus 229 ~~~l~~~l~~~l~~~-g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PT 307 (789)
+++++.+..+.|+.. ...+++|.|..+|...+.+.+++++.|||.||+++|.+|+|.. ...+|||||.
T Consensus 75 ~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-----------dg~alvi~pl 143 (695)
T KOG0353|consen 75 DFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-----------DGFALVICPL 143 (695)
T ss_pred CCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc-----------CCceEeechh
Confidence 455666666666543 5678999999999999999999999999999999999999864 4568999999
Q ss_pred HHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHH---HHh---cCCcEEEeCHHHHHHH---Hhh--ccccccceeEE
Q 003887 308 RELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELK---AGCEIVIATPGRLIDM---LKM--KALTMSRVTYL 376 (789)
Q Consensus 308 reLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~---~l~---~~~dIiV~Tp~~L~~~---l~~--~~~~l~~i~~l 376 (789)
..|+....-.++.+ ++....+....++.+... .+. ....+|..||+.+..- +.+ +.+....+.+|
T Consensus 144 islmedqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~i 219 (695)
T KOG0353|consen 144 ISLMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLI 219 (695)
T ss_pred HHHHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEE
Confidence 99998777777766 677666665555443211 111 2367999999998532 221 34556788999
Q ss_pred EEcccchhccCC--ChHHHH--HHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCC
Q 003887 377 VLDEADRMFDLG--FEPQIR--SIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPS 452 (789)
Q Consensus 377 VlDEah~m~~~~--f~~~i~--~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~ 452 (789)
-|||+|....|| |.+.+. .++.+--+...+|.++||.++.+..-++.++.-...+.. ..+...+++...+..-+.
T Consensus 220 aidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf-~a~fnr~nl~yev~qkp~ 298 (695)
T KOG0353|consen 220 AIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTF-RAGFNRPNLKYEVRQKPG 298 (695)
T ss_pred eecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhhee-ecccCCCCceeEeeeCCC
Confidence 999999999997 555443 445555567889999999998887777776653222211 122333444444433333
Q ss_pred C-cchHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhh
Q 003887 453 D-AEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAA 531 (789)
Q Consensus 453 ~-~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~ 531 (789)
. .+-...+..++..-..+..-||||-++.+|+.++..|+.+|+....+|..|.+.+|.-+-+.|-.|++.|+|||-+.+
T Consensus 299 n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafg 378 (695)
T KOG0353|consen 299 NEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFG 378 (695)
T ss_pred ChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeec
Confidence 2 334455666666665666789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEEcCCCCHHHHHH-------------------------------------------HHhhcCCCCCCC
Q 003887 532 RGLDIKSIKSVVNFDIARDMDMHVH-------------------------------------------RIGRTGRAGDKD 568 (789)
Q Consensus 532 ~GlDI~~v~~VI~~d~p~s~~~y~Q-------------------------------------------riGR~gR~G~~~ 568 (789)
+|+|-|+|+.||+..+|.+++.|.| -.||+||.+ .+
T Consensus 379 mgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~-~~ 457 (695)
T KOG0353|consen 379 MGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDD-MK 457 (695)
T ss_pred ccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCC-Cc
Confidence 9999999999999999999999999 568999998 57
Q ss_pred eEEEEEEccccHH
Q 003887 569 GTAYTLVTQKEAR 581 (789)
Q Consensus 569 G~~i~l~~~~d~~ 581 (789)
..|+.++--.|.-
T Consensus 458 a~cilyy~~~dif 470 (695)
T KOG0353|consen 458 ADCILYYGFADIF 470 (695)
T ss_pred ccEEEEechHHHH
Confidence 8999887655543
No 88
>PRK09694 helicase Cas3; Provisional
Probab=99.96 E-value=8.5e-27 Score=277.65 Aligned_cols=312 Identities=18% Similarity=0.185 Sum_probs=203.7
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhh
Q 003887 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (789)
Q Consensus 245 ~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~ 324 (789)
...|+|+|..+........-+|+.||||+|||.++++++.. ++.. ....+++|.+||+++++|+++.+.+++..
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~-l~~~-----~~~~gi~~aLPT~Atan~m~~Rl~~~~~~ 357 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWR-LIDQ-----GLADSIIFALPTQATANAMLSRLEALASK 357 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHH-HHHh-----CCCCeEEEECcHHHHHHHHHHHHHHHHHH
Confidence 35899999988655445567899999999999997766543 3322 23467999999999999999999876553
Q ss_pred c--CcEEEEEEcCCChHHHH--------------------HHHhc-------CCcEEEeCHHHHHHHHhh-ccccccce-
Q 003887 325 H--GIRVSAVYGGMSKLDQF--------------------KELKA-------GCEIVIATPGRLIDMLKM-KALTMSRV- 373 (789)
Q Consensus 325 ~--~i~v~~~~gg~~~~~~~--------------------~~l~~-------~~dIiV~Tp~~L~~~l~~-~~~~l~~i- 373 (789)
. ...+.+++|........ ..+.. -.+|+|||...++..+.. +...+..+
T Consensus 358 ~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~ 437 (878)
T PRK09694 358 LFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFG 437 (878)
T ss_pred hcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHh
Confidence 2 34567777655321111 11111 179999999888754432 22222222
Q ss_pred ---eEEEEcccchhccCCChHHHHHHHhhc-CCCceEEEEeccCcHHHHHH-HHHHhCC-C--------eEEeecc----
Q 003887 374 ---TYLVLDEADRMFDLGFEPQIRSIVGQI-RPDRQTLLFSATMPRKVEKL-AREILSD-P--------VRVTVGE---- 435 (789)
Q Consensus 374 ---~~lVlDEah~m~~~~f~~~i~~il~~~-~~~~q~ll~SATl~~~v~~l-~~~~l~~-p--------~~i~i~~---- 435 (789)
++|||||+|.+-. -....+..++..+ .....+|+||||+|..+... ...|-.. + .......
T Consensus 438 La~svvIiDEVHAyD~-ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~ 516 (878)
T PRK09694 438 LGRSVLIVDEVHAYDA-YMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQ 516 (878)
T ss_pred hccCeEEEechhhCCH-HHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccce
Confidence 5899999997522 1223344444433 24567999999999887654 3333211 1 0000000
Q ss_pred -ccCccc----cceEEE--EecC-CCcchHHHHHHhcC-CCCCCCcEEEEecccccHHHHHHHHHHcC---CceeeccCC
Q 003887 436 -VGMANE----DITQVV--HVIP-SDAEKLPWLLEKLP-GMIDDGDVLVFASKKTTVDEIESQLAQKG---FKAAALHGD 503 (789)
Q Consensus 436 -~~~~~~----~i~q~~--~~~~-~~~~k~~~L~~~L~-~~~~~~kvLVF~~s~~~a~~l~~~L~~~g---~~v~~lhg~ 503 (789)
...... .....+ .... ........+++.+. .....+++|||||++..|..+++.|++.. ..+..+|+.
T Consensus 517 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsr 596 (878)
T PRK09694 517 RFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHAR 596 (878)
T ss_pred eeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCC
Confidence 000000 011111 1110 10011122333332 22345689999999999999999999765 679999999
Q ss_pred CCHHHH----HHHHHHh-hcCC---ccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCC
Q 003887 504 KDQASR----MEILQKF-KSGV---YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGD 566 (789)
Q Consensus 504 ~~~~eR----~~~l~~F-~~G~---~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~ 566 (789)
+.+.+| .++++.| ++|+ ..|||||+++++|||| ++++||....| ++.++||+||++|.+.
T Consensus 597 f~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 597 FTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 999999 4678888 6666 4799999999999999 58999998888 7899999999999984
No 89
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.96 E-value=7e-28 Score=272.13 Aligned_cols=294 Identities=21% Similarity=0.282 Sum_probs=203.2
Q ss_pred CCCcHHHHHHHHHHHc----CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003887 246 EKPTSIQCQALPIILS----GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~----grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~ 321 (789)
..|+++|.+++..+.. .+..++++|||+|||++++.. +..+ +..+||||||++|+.||.+.+.++
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~-~~~~----------~~~~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEA-IAEL----------KRSTLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHH-HHHh----------cCCEEEEECcHHHHHHHHHHHHHh
Confidence 4799999999999998 899999999999999875443 3433 223999999999999998777776
Q ss_pred hhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcC
Q 003887 322 AKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR 401 (789)
Q Consensus 322 ~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~ 401 (789)
.... .....+++...... . ..|+|+|++.+........+....+.+|||||||++....+ ..+...+.
T Consensus 104 ~~~~--~~~g~~~~~~~~~~-----~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~----~~~~~~~~ 171 (442)
T COG1061 104 LLLN--DEIGIYGGGEKELE-----P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSY----RRILELLS 171 (442)
T ss_pred cCCc--cccceecCceeccC-----C-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHH----HHHHHhhh
Confidence 5321 12333444332211 1 46999999998775211233344799999999999775433 33333333
Q ss_pred CCceEEEEeccCcHHHHHHH---HHHhCCCeEEeeccccCcc----ccceEEEEec--C---------------------
Q 003887 402 PDRQTLLFSATMPRKVEKLA---REILSDPVRVTVGEVGMAN----EDITQVVHVI--P--------------------- 451 (789)
Q Consensus 402 ~~~q~ll~SATl~~~v~~l~---~~~l~~p~~i~i~~~~~~~----~~i~q~~~~~--~--------------------- 451 (789)
....+|+||||+++.-.... ..+++ |....+....... .+.......+ .
T Consensus 172 ~~~~~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~ 250 (442)
T COG1061 172 AAYPRLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRAR 250 (442)
T ss_pred cccceeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhh
Confidence 22228999999874431111 11221 2222221111000 0000000000 0
Q ss_pred --------------CCcchHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhh
Q 003887 452 --------------SDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFK 517 (789)
Q Consensus 452 --------------~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~ 517 (789)
....+...+..++.......++||||..+.++..++..|...++ +..+.+..++.+|..+++.|+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr 329 (442)
T COG1061 251 GTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFR 329 (442)
T ss_pred hhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHH
Confidence 01112222333333222356999999999999999999998888 999999999999999999999
Q ss_pred cCCccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCC
Q 003887 518 SGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRA 564 (789)
Q Consensus 518 ~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~ 564 (789)
.|.+++||++.++.+|+|+|+++++|...+..+...|+||+||..|.
T Consensus 330 ~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 330 TGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred cCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 99999999999999999999999999999999999999999999993
No 90
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=3.6e-27 Score=275.19 Aligned_cols=317 Identities=20% Similarity=0.248 Sum_probs=224.6
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003887 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (789)
Q Consensus 247 ~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~ 326 (789)
.|.++|.-+--.+. +.-|+.++||+|||++|++|++..++. +..++||+||++||.|.++++..+...++
T Consensus 82 ~~ydvQliGg~~Lh--~G~Iaem~TGeGKTL~a~Lpa~~~al~--------G~~V~VvTpn~yLA~qd~e~m~~l~~~lG 151 (896)
T PRK13104 82 RHFDVQLIGGMVLH--EGNIAEMRTGEGKTLVATLPAYLNAIS--------GRGVHIVTVNDYLAKRDSQWMKPIYEFLG 151 (896)
T ss_pred CcchHHHhhhhhhc--cCccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEcCCHHHHHHHHHHHHHHhcccC
Confidence 45556655544444 446899999999999999999987643 34589999999999999999999999999
Q ss_pred cEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHH-HHHHhhc-cccc-----cceeEEEEcccchhcc-CC----------
Q 003887 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMK-ALTM-----SRVTYLVLDEADRMFD-LG---------- 388 (789)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L-~~~l~~~-~~~l-----~~i~~lVlDEah~m~~-~~---------- 388 (789)
+++.+++||.+...+...+ .+||+|+||++| .+++..+ .+.+ ..+.++||||||.|+- ..
T Consensus 152 Ltv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~ 229 (896)
T PRK13104 152 LTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAA 229 (896)
T ss_pred ceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCC
Confidence 9999999998877654433 589999999999 8888765 3334 5899999999998742 00
Q ss_pred -----ChHHHHHHHhhcCC--------------CceEEEEecc-------------------------------------
Q 003887 389 -----FEPQIRSIVGQIRP--------------DRQTLLFSAT------------------------------------- 412 (789)
Q Consensus 389 -----f~~~i~~il~~~~~--------------~~q~ll~SAT------------------------------------- 412 (789)
....+..++..+.. ..+.+.+|-.
T Consensus 230 ~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL 309 (896)
T PRK13104 230 EDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAAL 309 (896)
T ss_pred ccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHH
Confidence 11122222222211 1122222221
Q ss_pred -------------------------------------------------------------------------------C
Q 003887 413 -------------------------------------------------------------------------------M 413 (789)
Q Consensus 413 -------------------------------------------------------------------------------l 413 (789)
.
T Consensus 310 ~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa 389 (896)
T PRK13104 310 KAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTA 389 (896)
T ss_pred HHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCC
Confidence 1
Q ss_pred cHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHHHHhcCCCC-CCCcEEEEecccccHHHHHHHHHH
Q 003887 414 PRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQ 492 (789)
Q Consensus 414 ~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~ 492 (789)
.....++ ..+++-.+.......+....+. .-.++.....|+..+++.+.+.. .+.++||||++++.++.|+..|.+
T Consensus 390 ~te~~Ef-~~iY~l~Vv~IPtnkp~~R~d~--~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~ 466 (896)
T PRK13104 390 DTEAYEF-QQIYNLEVVVIPTNRSMIRKDE--ADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKK 466 (896)
T ss_pred hhHHHHH-HHHhCCCEEECCCCCCcceecC--CCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHH
Confidence 1111110 0111111111000000000000 11122234567777877775543 345999999999999999999999
Q ss_pred cCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCC----------------------------------
Q 003887 493 KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKS---------------------------------- 538 (789)
Q Consensus 493 ~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~---------------------------------- 538 (789)
.++++.+||+.+.+.++..+.+.|+.|. |+|||++++||+||.=
T Consensus 467 ~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 544 (896)
T PRK13104 467 ENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEV 544 (896)
T ss_pred cCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHH
Confidence 9999999999999999999999999994 9999999999999972
Q ss_pred ----ccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHH
Q 003887 539 ----IKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581 (789)
Q Consensus 539 ----v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~ 581 (789)
=-+||--..+.|..--.|-.||+||.| .+|.+..|++-+|.-
T Consensus 545 ~~~GGL~VIgTerhesrRID~QLrGRaGRQG-DPGss~f~lSleD~l 590 (896)
T PRK13104 545 IAAGGLRIIGSERHESRRIDNQLRGRAGRQG-DPGSSRFYLSLEDNL 590 (896)
T ss_pred HHcCCCEEEeeccCchHHHHHHhccccccCC-CCCceEEEEEcCcHH
Confidence 237888888888888899999999999 689999999887753
No 91
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.95 E-value=3.4e-28 Score=282.21 Aligned_cols=319 Identities=19% Similarity=0.320 Sum_probs=230.2
Q ss_pred CCCcHHHHHHHHHHH----cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003887 246 EKPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il----~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~ 321 (789)
..++.||.++++|++ .+.++|++.+||.|||++ .+.+|.++..... -.||. |||||...+. .|..++..|
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvq-ti~fl~~l~~~~~---~~gpf-lvvvplst~~-~W~~ef~~w 442 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQ-TITFLSYLFHSLQ---IHGPF-LVVVPLSTIT-AWEREFETW 442 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchH-HHHHHHHHHHhhh---ccCCe-EEEeehhhhH-HHHHHHHHH
Confidence 579999999999987 568999999999999998 5667777765432 34675 8889986665 699999999
Q ss_pred hhhcCcEEEEEEcCCChHHHHHHHh----c-----CCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHH
Q 003887 322 AKSHGIRVSAVYGGMSKLDQFKELK----A-----GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQ 392 (789)
Q Consensus 322 ~~~~~i~v~~~~gg~~~~~~~~~l~----~-----~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~ 392 (789)
+ .+++++++|.....+.++... . ..+++|+|++.++.- +..+.--.+.+++|||||++.+. ...
T Consensus 443 ~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkD--k~~L~~i~w~~~~vDeahrLkN~--~~~ 515 (1373)
T KOG0384|consen 443 T---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKD--KAELSKIPWRYLLVDEAHRLKND--ESK 515 (1373)
T ss_pred h---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhcc--HhhhccCCcceeeecHHhhcCch--HHH
Confidence 7 689999999887776665542 1 379999999988652 22333446789999999998764 334
Q ss_pred HHHHHhhcCCCceEEEEecc-CcHHHHHHHHH------------------------------------------------
Q 003887 393 IRSIVGQIRPDRQTLLFSAT-MPRKVEKLARE------------------------------------------------ 423 (789)
Q Consensus 393 i~~il~~~~~~~q~ll~SAT-l~~~v~~l~~~------------------------------------------------ 423 (789)
+...+..+....+ |++|.| +.+++.+|+..
T Consensus 516 l~~~l~~f~~~~r-llitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvek 594 (1373)
T KOG0384|consen 516 LYESLNQFKMNHR-LLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEK 594 (1373)
T ss_pred HHHHHHHhcccce-eeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhcc
Confidence 4555666654444 444555 55566555321
Q ss_pred -----------------------------------------------------HhCCCeEEeeccccCccccceE-----
Q 003887 424 -----------------------------------------------------ILSDPVRVTVGEVGMANEDITQ----- 445 (789)
Q Consensus 424 -----------------------------------------------------~l~~p~~i~i~~~~~~~~~i~q----- 445 (789)
+|++|..|......... .+..
T Consensus 595 slp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~-~~~~~~~d~ 673 (1373)
T KOG0384|consen 595 SLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILG-DFRDKMRDE 673 (1373)
T ss_pred CCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHH-hhhhcchHH
Confidence 11222211110000000 0000
Q ss_pred EEEecCCCcchHHHHHHhcCCCCCC-CcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhc---CCc
Q 003887 446 VVHVIPSDAEKLPWLLEKLPGMIDD-GDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKS---GVY 521 (789)
Q Consensus 446 ~~~~~~~~~~k~~~L~~~L~~~~~~-~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~---G~~ 521 (789)
.+..+-....|+..|-.+|.++... ++||||.+.+..++.|++||...+|++..|.|.+..+.|..+|++|.. ..+
T Consensus 674 ~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddF 753 (1373)
T KOG0384|consen 674 ALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDF 753 (1373)
T ss_pred HHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCce
Confidence 0000001223333344444444444 599999999999999999999999999999999999999999999976 467
Q ss_pred cEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCC-eEEEEEEcccc
Q 003887 522 HVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKD-GTAYTLVTQKE 579 (789)
Q Consensus 522 ~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~-G~~i~l~~~~d 579 (789)
.+|+||.+.+-|||+..+++||+||..|||..-+|+..||+|+|++. -.+|.||+.+-
T Consensus 754 vFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 754 VFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred EEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCc
Confidence 89999999999999999999999999999999999999999999664 45788888763
No 92
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=5.8e-27 Score=272.69 Aligned_cols=181 Identities=18% Similarity=0.280 Sum_probs=144.2
Q ss_pred ChhccCCCHHHHHHHHHHcCcccc-cCCCCCCCCCcccCCCCHHHHHHHH-----HcCCCCC---cHHHHHHHHHHHcCC
Q 003887 193 SASISGMSEQDVMEYKKSLAIRVS-GFDVPRPVKTFEDCGFSTQLMHAIS-----KQGYEKP---TSIQCQALPIILSGR 263 (789)
Q Consensus 193 ~~~i~~~s~~~~~~~r~~~~i~v~-~~~~P~pi~sf~~~~l~~~l~~~l~-----~~g~~~p---tpiQ~~ai~~il~gr 263 (789)
.+.+..|+.++.......+...+. +..+-.. --+.+.+...+...+. ..||..| +|+|.|+++.++.++
T Consensus 31 e~~~~~lsd~eL~~kt~~~k~~l~~~~~ld~~--l~eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~ 108 (970)
T PRK12899 31 DEKFSSLSDDELRNKTAELKQRYQDGESLDKL--LPEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHK 108 (970)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHcCCchHHH--HHHHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCC
Confidence 345777888776654444322221 2111111 1245678888877776 6789988 999999999999999
Q ss_pred CEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHH
Q 003887 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK 343 (789)
Q Consensus 264 dvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~ 343 (789)
++|+.++||+|||++|++|++..++.. ..++||+||++||.|+++.+..+...+++++.+++||.+...+..
T Consensus 109 gvIAeaqTGeGKTLAf~LP~l~~aL~g--------~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~ 180 (970)
T PRK12899 109 GFITEMQTGEGKTLTAVMPLYLNALTG--------KPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKE 180 (970)
T ss_pred CeEEEeCCCCChHHHHHHHHHHHHhhc--------CCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH
Confidence 999999999999999999999887542 238999999999999999999999999999999999999888765
Q ss_pred HHhcCCcEEEeCHHHH-HHHHhhcccccc-------ceeEEEEcccchhc
Q 003887 344 ELKAGCEIVIATPGRL-IDMLKMKALTMS-------RVTYLVLDEADRMF 385 (789)
Q Consensus 344 ~l~~~~dIiV~Tp~~L-~~~l~~~~~~l~-------~i~~lVlDEah~m~ 385 (789)
.+ ++||+|+||++| .++++.+.+.++ .+.++||||||.|+
T Consensus 181 ~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 181 IY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred Hc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhh
Confidence 54 599999999999 999987755555 45899999999885
No 93
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=6.4e-27 Score=261.85 Aligned_cols=325 Identities=21% Similarity=0.262 Sum_probs=229.2
Q ss_pred CCCcHHHHHHHHHHH----cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003887 246 EKPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il----~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~ 321 (789)
..+.|||+.++.|+. ++...|+..+||.|||++ ++.+|..|....... ..+|||||. .|+.||..++..|
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQ-iisFLaaL~~S~k~~----~paLIVCP~-Tii~qW~~E~~~w 277 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQ-IISFLAALHHSGKLT----KPALIVCPA-TIIHQWMKEFQTW 277 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchh-HHHHHHHHhhccccc----CceEEEccH-HHHHHHHHHHHHh
Confidence 467899999999987 457789999999999998 666777776553222 348999998 5667999999999
Q ss_pred hhhcCcEEEEEEcCCCh--------HHHHH-----HHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCC
Q 003887 322 AKSHGIRVSAVYGGMSK--------LDQFK-----ELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG 388 (789)
Q Consensus 322 ~~~~~i~v~~~~gg~~~--------~~~~~-----~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~ 388 (789)
.. .++|.++++.... ..... ....+.+|+|+|+..|.- ....+.-..|+|+|+||.|+|-+.+
T Consensus 278 ~p--~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~--~~d~l~~~~W~y~ILDEGH~IrNpn 353 (923)
T KOG0387|consen 278 WP--PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI--QGDDLLGILWDYVILDEGHRIRNPN 353 (923)
T ss_pred Cc--ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc--cCcccccccccEEEecCcccccCCc
Confidence 87 5788888876552 11111 112357899999987743 2233445578999999999998764
Q ss_pred ChHHHHHHHhhcCCCceEEEEecc-CcHHHHHHHHHH-------------------------------------------
Q 003887 389 FEPQIRSIVGQIRPDRQTLLFSAT-MPRKVEKLAREI------------------------------------------- 424 (789)
Q Consensus 389 f~~~i~~il~~~~~~~q~ll~SAT-l~~~v~~l~~~~------------------------------------------- 424 (789)
.++...+..++... .|++|.| +.+++.+|...|
T Consensus 354 --s~islackki~T~~-RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~ 430 (923)
T KOG0387|consen 354 --SKISLACKKIRTVH-RIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAV 430 (923)
T ss_pred --cHHHHHHHhccccc-eEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHH
Confidence 34555555555433 4455555 555555543211
Q ss_pred ------------------------------------------------------------------------hCCCeEEe
Q 003887 425 ------------------------------------------------------------------------LSDPVRVT 432 (789)
Q Consensus 425 ------------------------------------------------------------------------l~~p~~i~ 432 (789)
|++|..+.
T Consensus 431 ~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~ 510 (923)
T KOG0387|consen 431 ALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLD 510 (923)
T ss_pred HHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCccccc
Confidence 11111111
Q ss_pred eccc-cCccccceEEEEecCCCcchHHHHHHhcCCCCCC-CcEEEEecccccHHHHHHHHH-HcCCceeeccCCCCHHHH
Q 003887 433 VGEV-GMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDD-GDVLVFASKKTTVDEIESQLA-QKGFKAAALHGDKDQASR 509 (789)
Q Consensus 433 i~~~-~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~-~kvLVF~~s~~~a~~l~~~L~-~~g~~v~~lhg~~~~~eR 509 (789)
-... ....++.. -......|+..+..+|..+... .++|+|.+++.+.+.|...|. ..+|.++.+.|..+...|
T Consensus 511 ~~~~~~~~~~D~~----g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R 586 (923)
T KOG0387|consen 511 RRDEDEKQGPDYE----GDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALR 586 (923)
T ss_pred CcccccccCCCcC----CChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchh
Confidence 0000 00000000 0011345677777777665544 499999999999999999999 689999999999999999
Q ss_pred HHHHHHhhcCCc--cEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeE-EEEEEccc---cHHHH
Q 003887 510 MEILQKFKSGVY--HVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGT-AYTLVTQK---EARFA 583 (789)
Q Consensus 510 ~~~l~~F~~G~~--~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~-~i~l~~~~---d~~~~ 583 (789)
..+++.|+++.. -+|++|.+.+-|||+.+++.||+|||.|||..-.|+.-|+.|.|+++.+ +|.|++.. +.-+.
T Consensus 587 ~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~ 666 (923)
T KOG0387|consen 587 QKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYH 666 (923)
T ss_pred hHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHH
Confidence 999999998753 4688999999999999999999999999999999999999999977665 45667654 34444
Q ss_pred HHHH
Q 003887 584 GELV 587 (789)
Q Consensus 584 ~~l~ 587 (789)
+++.
T Consensus 667 rQI~ 670 (923)
T KOG0387|consen 667 RQIF 670 (923)
T ss_pred HHHH
Confidence 4443
No 94
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=2.1e-26 Score=263.29 Aligned_cols=292 Identities=18% Similarity=0.234 Sum_probs=196.0
Q ss_pred EEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHH---H
Q 003887 266 IGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ---F 342 (789)
Q Consensus 266 l~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~---~ 342 (789)
|+.++||||||.+|+..+...+ . .+.++|||+|+++|+.|+++.+++.+ +..+.+++++.+..+. +
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l-~-------~g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~ 69 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVL-A-------LGKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAW 69 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHH-H-------cCCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHH
Confidence 4789999999999876544433 2 25679999999999999999988764 5678888888776544 3
Q ss_pred HHHhc-CCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCC---ChHHHH--HHHhhcCCCceEEEEeccCcHH
Q 003887 343 KELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG---FEPQIR--SIVGQIRPDRQTLLFSATMPRK 416 (789)
Q Consensus 343 ~~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~---f~~~i~--~il~~~~~~~q~ll~SATl~~~ 416 (789)
..+.. .++|||+|+..|. ..+.++++|||||+|...-+. .....+ .++.....+.++|++|||+..+
T Consensus 70 ~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsle 142 (505)
T TIGR00595 70 RKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLE 142 (505)
T ss_pred HHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHH
Confidence 33333 4799999998763 357889999999999765322 111111 2223334578899999997644
Q ss_pred HHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCc---chHHHHHHhcCCCCC-CCcEEEEeccccc----------
Q 003887 417 VEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDA---EKLPWLLEKLPGMID-DGDVLVFASKKTT---------- 482 (789)
Q Consensus 417 v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~---~k~~~L~~~L~~~~~-~~kvLVF~~s~~~---------- 482 (789)
....+ .-+....+...............+.-+.... .-...|++.+.+.+. ++++|||+|++..
T Consensus 143 s~~~~--~~g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg 220 (505)
T TIGR00595 143 SYHNA--KQKAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCG 220 (505)
T ss_pred HHHHH--hcCCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCc
Confidence 33222 2222222222111111111111111111111 111334555544443 4589999887643
Q ss_pred --------------------------------------------------HHHHHHHHHHc--CCceeeccCCCCHHHH-
Q 003887 483 --------------------------------------------------VDEIESQLAQK--GFKAAALHGDKDQASR- 509 (789)
Q Consensus 483 --------------------------------------------------a~~l~~~L~~~--g~~v~~lhg~~~~~eR- 509 (789)
.+++++.|.+. +.++..+|+++++..+
T Consensus 221 ~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~ 300 (505)
T TIGR00595 221 YILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGA 300 (505)
T ss_pred CccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccH
Confidence 37788888876 6789999999987766
Q ss_pred -HHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEcCC--C----------CHHHHHHHHhhcCCCCCCCeEEEEEEc
Q 003887 510 -MEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIA--R----------DMDMHVHRIGRTGRAGDKDGTAYTLVT 576 (789)
Q Consensus 510 -~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p--~----------s~~~y~QriGR~gR~G~~~G~~i~l~~ 576 (789)
+.+++.|++|+.+|||+|+++++|+|+|+|++|+.+|.. . ....|+|++||+||.+ +.|.+++...
T Consensus 301 ~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~-~~g~viiqt~ 379 (505)
T TIGR00595 301 HEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAE-DPGQVIIQTY 379 (505)
T ss_pred HHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCC-CCCEEEEEeC
Confidence 899999999999999999999999999999998654433 2 2467899999999988 6788886553
Q ss_pred cc
Q 003887 577 QK 578 (789)
Q Consensus 577 ~~ 578 (789)
..
T Consensus 380 ~p 381 (505)
T TIGR00595 380 NP 381 (505)
T ss_pred CC
Confidence 33
No 95
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=7.9e-27 Score=269.83 Aligned_cols=345 Identities=20% Similarity=0.249 Sum_probs=250.0
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC-CCEEEEccCCChhhHHHHHHHHHHHhcCcccccC---CCCEEEEEcC
Q 003887 231 GFSTQLMHAISKQGYEKPTSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKE---EGPIGVICAP 306 (789)
Q Consensus 231 ~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~g-rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~---~gp~vLIl~P 306 (789)
.+|.+-..++. |+.++.++|....+..+.+ .++++|||||+|||..+++.+|+.+-.+...... ..-++++++|
T Consensus 295 elP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAP 372 (1674)
T KOG0951|consen 295 ELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAP 372 (1674)
T ss_pred CCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEee
Confidence 34444444443 5567999999999999877 6899999999999999999999988655332111 1347899999
Q ss_pred cHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhcc---ccccceeEEEEcccch
Q 003887 307 TRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKA---LTMSRVTYLVLDEADR 383 (789)
Q Consensus 307 TreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~---~~l~~i~~lVlDEah~ 383 (789)
..+|++.|...+.+....++++|.-.+|......+. ..+..||||||+..- .+.++. ...+-+.++|+||.|.
T Consensus 373 mKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~D-iITRk~gdraY~qlvrLlIIDEIHL 448 (1674)
T KOG0951|consen 373 MKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKWD-IITRKSGDRAYEQLVRLLIIDEIHL 448 (1674)
T ss_pred HHHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchhh-hhhcccCchhHHHHHHHHhhhhhhh
Confidence 999999999999999999999999999986644321 234889999999974 343332 2234578899999997
Q ss_pred hccCCChHHHHHHHhhcC-------CCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCc--
Q 003887 384 MFDLGFEPQIRSIVGQIR-------PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDA-- 454 (789)
Q Consensus 384 m~~~~f~~~i~~il~~~~-------~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~-- 454 (789)
+-+ ..++.+..|..+.. ...+++++|||+|+- ++++.-+..++.-+..........++.|.++-+....
T Consensus 449 LhD-dRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy-~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~ 526 (1674)
T KOG0951|consen 449 LHD-DRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNY-EDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPL 526 (1674)
T ss_pred ccc-ccchHHHHHHHHHHHHhhhcccCceeeeecccCCch-hhhHHHhccCcccccccCcccCcCCccceEeccccCCch
Confidence 544 35666766655442 367899999999964 5555555555533333344455556677666554321
Q ss_pred chHH----HHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHc-------------------------------------
Q 003887 455 EKLP----WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK------------------------------------- 493 (789)
Q Consensus 455 ~k~~----~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~------------------------------------- 493 (789)
.++. ..++.+-+....++||||+.++++.-+.++.++..
T Consensus 527 ~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLL 606 (1674)
T KOG0951|consen 527 KRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLL 606 (1674)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHh
Confidence 1211 23333434445689999999999887777766521
Q ss_pred CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEE----EEcC------CCCHHHHHHHHhhcCC
Q 003887 494 GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVV----NFDI------ARDMDMHVHRIGRTGR 563 (789)
Q Consensus 494 g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI----~~d~------p~s~~~y~QriGR~gR 563 (789)
.+.++.+|.+|+..+|..+.+.|+.|.++|||+|..+++|+|+|.-+++| .||+ +.++.+.+||+||+||
T Consensus 607 pygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragr 686 (1674)
T KOG0951|consen 607 PYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGR 686 (1674)
T ss_pred hccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCC
Confidence 45689999999999999999999999999999999999999999865555 3665 3479999999999999
Q ss_pred CC-CCCeEEEEEEccccHHHH
Q 003887 564 AG-DKDGTAYTLVTQKEARFA 583 (789)
Q Consensus 564 ~G-~~~G~~i~l~~~~d~~~~ 583 (789)
.+ ...|..++.....+..+.
T Consensus 687 p~~D~~gegiiit~~se~qyy 707 (1674)
T KOG0951|consen 687 PQYDTCGEGIIITDHSELQYY 707 (1674)
T ss_pred CccCcCCceeeccCchHhhhh
Confidence 98 334555555544444433
No 96
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=2.8e-26 Score=267.73 Aligned_cols=317 Identities=20% Similarity=0.213 Sum_probs=231.5
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003887 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (789)
Q Consensus 247 ~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~ 326 (789)
.|+++|.-+.-.+.+| -|+.+.||+|||+++.+|++...+. |..+-||+||..||.|.++++..+...++
T Consensus 81 ~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~IvTpn~yLA~rd~e~~~~l~~~LG 150 (830)
T PRK12904 81 RHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNALT--------GKGVHVVTVNDYLAKRDAEWMGPLYEFLG 150 (830)
T ss_pred CCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHHc--------CCCEEEEecCHHHHHHHHHHHHHHHhhcC
Confidence 5777887777666555 4899999999999999999644332 33477999999999999999999999999
Q ss_pred cEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHH-HHHHhhcc------ccccceeEEEEcccchhcc-C-----------
Q 003887 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMKA------LTMSRVTYLVLDEADRMFD-L----------- 387 (789)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L-~~~l~~~~------~~l~~i~~lVlDEah~m~~-~----------- 387 (789)
+++.+++|+.+..++...+ .++|+++||++| .++++... ..+..+.++||||||.|+- .
T Consensus 151 lsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~ 228 (830)
T PRK12904 151 LSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPA 228 (830)
T ss_pred CeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCC
Confidence 9999999998887665443 499999999999 88886543 3467899999999998731 0
Q ss_pred ----CChHHHHHHHhhcCCC------------------------------------------------------------
Q 003887 388 ----GFEPQIRSIVGQIRPD------------------------------------------------------------ 403 (789)
Q Consensus 388 ----~f~~~i~~il~~~~~~------------------------------------------------------------ 403 (789)
.+...+..+...+..+
T Consensus 229 ~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYi 308 (830)
T PRK12904 229 EDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYI 308 (830)
T ss_pred CcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEE
Confidence 0111122222222110
Q ss_pred ---------------------------------------------------------ceEEEEeccCcHHHHHHHHHHhC
Q 003887 404 ---------------------------------------------------------RQTLLFSATMPRKVEKLAREILS 426 (789)
Q Consensus 404 ---------------------------------------------------------~q~ll~SATl~~~v~~l~~~~l~ 426 (789)
.++.+||.|......++... ++
T Consensus 309 V~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~i-Y~ 387 (830)
T PRK12904 309 VKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREI-YN 387 (830)
T ss_pred EECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHH-hC
Confidence 12344455543332222222 22
Q ss_pred CCeEEeeccccCccccceEEEEecCCCcchHHHHHHhcCCCC-CCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCC
Q 003887 427 DPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKD 505 (789)
Q Consensus 427 ~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~ 505 (789)
-.+.......+....+.. ..+......|+..+.+.+.+.. ...++||||+++..++.|+..|.+.++++..||+.
T Consensus 388 l~vv~IPtnkp~~r~d~~--d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak-- 463 (830)
T PRK12904 388 LDVVVIPTNRPMIRIDHP--DLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK-- 463 (830)
T ss_pred CCEEEcCCCCCeeeeeCC--CeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--
Confidence 222211111111111111 1222345678888888876532 34599999999999999999999999999999995
Q ss_pred HHHHHHHHHHhhcCCccEEEeehhhhccCCCCCc--------------------------------------cEEEEEcC
Q 003887 506 QASRMEILQKFKSGVYHVLIATDVAARGLDIKSI--------------------------------------KSVVNFDI 547 (789)
Q Consensus 506 ~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v--------------------------------------~~VI~~d~ 547 (789)
+.+|+..+..|+.+...|+|||++++||+||+-- -|||--..
T Consensus 464 q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTer 543 (830)
T PRK12904 464 NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTER 543 (830)
T ss_pred hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEeccc
Confidence 8899999999999999999999999999998742 37888888
Q ss_pred CCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHH
Q 003887 548 ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581 (789)
Q Consensus 548 p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~ 581 (789)
+.|..--.|-.||+||.| .+|.+..|++-+|.-
T Consensus 544 hesrRid~QlrGRagRQG-dpGss~f~lSleD~l 576 (830)
T PRK12904 544 HESRRIDNQLRGRSGRQG-DPGSSRFYLSLEDDL 576 (830)
T ss_pred CchHHHHHHhhcccccCC-CCCceeEEEEcCcHH
Confidence 999999999999999999 689999999887753
No 97
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.95 E-value=9.8e-27 Score=247.25 Aligned_cols=359 Identities=19% Similarity=0.257 Sum_probs=243.4
Q ss_pred cCccccccccCChhccCCCHHHHHHHHHHcCcccccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHc
Q 003887 182 YEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILS 261 (789)
Q Consensus 182 ~~~f~k~fy~~~~~i~~~s~~~~~~~r~~~~i~v~~~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~ 261 (789)
|+.-.-..|..++++..+ |..+.+...+.+.....|..+. ..+.|+|.+.+.|+..
T Consensus 143 ~er~~~rl~eh~pE~~~v----~~dlde~~p~i~e~aeqP~dli--------------------i~LL~fQkE~l~Wl~~ 198 (791)
T KOG1002|consen 143 YERNTLRLYEHHPELRNV----FTDLDEANPVIAERAEQPDDLI--------------------IPLLPFQKEGLAWLTS 198 (791)
T ss_pred cchhhhhhhhcCchhhhh----hhhhhhcCchhhhcccCcccce--------------------ecchhhhHHHHHHHHH
Confidence 444444567778876655 7777777777777666676554 5678999999999986
Q ss_pred C-----CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCC
Q 003887 262 G-----RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGM 336 (789)
Q Consensus 262 g-----rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~ 336 (789)
. ...|+..+||.|||++.+..+|+.+ .+...|||||+.+|. ||.+++.++.. +-.-+++|.|.
T Consensus 199 QE~Ss~~GGiLADEMGMGKTIQtIaLllae~---------~ra~tLVvaP~VAlm-QW~nEI~~~T~--gslkv~~YhG~ 266 (791)
T KOG1002|consen 199 QEESSVAGGILADEMGMGKTIQTIALLLAEV---------DRAPTLVVAPTVALM-QWKNEIERHTS--GSLKVYIYHGA 266 (791)
T ss_pred hhhhhhccceehhhhccchHHHHHHHHHhcc---------ccCCeeEEccHHHHH-HHHHHHHHhcc--CceEEEEEecc
Confidence 5 4579999999999999776666533 233389999998887 89999999987 45556677777
Q ss_pred ChHHHHHHHhcCCcEEEeCHHHHHHHHhhcccc-------------ccc--eeEEEEcccchhccCCC------------
Q 003887 337 SKLDQFKELKAGCEIVIATPGRLIDMLKMKALT-------------MSR--VTYLVLDEADRMFDLGF------------ 389 (789)
Q Consensus 337 ~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~-------------l~~--i~~lVlDEah~m~~~~f------------ 389 (789)
.....++++. ++|+|++|+..+....++.... |++ +..|||||||.|.+...
T Consensus 267 ~R~~nikel~-~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt 345 (791)
T KOG1002|consen 267 KRDKNIKELM-NYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALETT 345 (791)
T ss_pred cccCCHHHhh-cCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccccccccHHHHHHhhHhh
Confidence 7777777775 4999999999998887663222 333 45699999998754210
Q ss_pred -------------hHHHHHHHhhcC--C-------------------------------CceEEEEeccCcHHHHHH---
Q 003887 390 -------------EPQIRSIVGQIR--P-------------------------------DRQTLLFSATMPRKVEKL--- 420 (789)
Q Consensus 390 -------------~~~i~~il~~~~--~-------------------------------~~q~ll~SATl~~~v~~l--- 420 (789)
...+..++..++ | ..++++|.+.++..++.+
T Consensus 346 ~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~e 425 (791)
T KOG1002|consen 346 YRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVE 425 (791)
T ss_pred hhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeecccccCCcccchhhhhhhhhcccccccchhhccc
Confidence 011122221111 0 023333433332211111
Q ss_pred --------------------------------------------------------------------------------
Q 003887 421 -------------------------------------------------------------------------------- 420 (789)
Q Consensus 421 -------------------------------------------------------------------------------- 420 (789)
T Consensus 426 GpGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF 505 (791)
T KOG1002|consen 426 GPGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIF 505 (791)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHH
Confidence
Q ss_pred -----HHHHhCCCeEEeecc-ccCccccceEEEEe-------------------------------------cC------
Q 003887 421 -----AREILSDPVRVTVGE-VGMANEDITQVVHV-------------------------------------IP------ 451 (789)
Q Consensus 421 -----~~~~l~~p~~i~i~~-~~~~~~~i~q~~~~-------------------------------------~~------ 451 (789)
++....+|..+.... ......+......- ++
T Consensus 506 ~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 506 TLITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred HHHHHHHHhccCcceeeehhhcCCCccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccc
Confidence 111112233332210 00000000000000 00
Q ss_pred -------------------------------CCcchHHHHHHhcCCCCCCC---cEEEEecccccHHHHHHHHHHcCCce
Q 003887 452 -------------------------------SDAEKLPWLLEKLPGMIDDG---DVLVFASKKTTVDEIESQLAQKGFKA 497 (789)
Q Consensus 452 -------------------------------~~~~k~~~L~~~L~~~~~~~---kvLVF~~s~~~a~~l~~~L~~~g~~v 497 (789)
....|+..|.+.|..+.... +.|||.+.....+.+...|.+.|+.|
T Consensus 586 siDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfsc 665 (791)
T KOG1002|consen 586 SIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSC 665 (791)
T ss_pred cccccchhhhhcchhhhhhHHHhhhcchhhhcchhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceE
Confidence 12356667777665444333 78999999999999999999999999
Q ss_pred eeccCCCCHHHHHHHHHHhhcC-Ccc-EEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEE
Q 003887 498 AALHGDKDQASRMEILQKFKSG-VYH-VLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLV 575 (789)
Q Consensus 498 ~~lhg~~~~~eR~~~l~~F~~G-~~~-VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~ 575 (789)
+.|.|+|++..|..+++.|++. .+. +||+-.+.+..||+..+.+|+++|++||+..-.|...|++|+|+...+-++-+
T Consensus 666 VkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf 745 (791)
T KOG1002|consen 666 VKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRF 745 (791)
T ss_pred EEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEe
Confidence 9999999999999999999986 444 56777999999999999999999999999999999999999997666554444
Q ss_pred cc
Q 003887 576 TQ 577 (789)
Q Consensus 576 ~~ 577 (789)
+-
T Consensus 746 ~i 747 (791)
T KOG1002|consen 746 CI 747 (791)
T ss_pred eh
Confidence 43
No 98
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=6.3e-26 Score=263.76 Aligned_cols=318 Identities=21% Similarity=0.283 Sum_probs=224.4
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003887 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~ 325 (789)
..|++.|.-+.-.+..|+ |....||+|||+++.+|++...+. |..|-|++||.-||.|-++.+..+...+
T Consensus 79 ~~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~--------G~~v~vvT~neyLA~Rd~e~~~~~~~~L 148 (796)
T PRK12906 79 LRPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT--------GKGVHVVTVNEYLSSRDATEMGELYRWL 148 (796)
T ss_pred CCCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc--------CCCeEEEeccHHHHHhhHHHHHHHHHhc
Confidence 368888888777666665 899999999999999998887743 5668999999999999999999999999
Q ss_pred CcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHH-HHHhh------ccccccceeEEEEcccchhc-cCC---------
Q 003887 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLI-DMLKM------KALTMSRVTYLVLDEADRMF-DLG--------- 388 (789)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~-~~l~~------~~~~l~~i~~lVlDEah~m~-~~~--------- 388 (789)
|++|.++.++.+..+.. .. -.|||+.+|..-|- +.|+. .......+.+.||||+|.|+ |..
T Consensus 149 Gl~vg~i~~~~~~~~r~-~~-y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~ 226 (796)
T PRK12906 149 GLTVGLNLNSMSPDEKR-AA-YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQ 226 (796)
T ss_pred CCeEEEeCCCCCHHHHH-HH-hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCC
Confidence 99999999876665432 22 35899999988773 33322 12234568899999999763 100
Q ss_pred ------ChHHHHHHHhhcCCC-----------------------------------------------------------
Q 003887 389 ------FEPQIRSIVGQIRPD----------------------------------------------------------- 403 (789)
Q Consensus 389 ------f~~~i~~il~~~~~~----------------------------------------------------------- 403 (789)
+...+..+...+...
T Consensus 227 ~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~ 306 (796)
T PRK12906 227 AEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALR 306 (796)
T ss_pred CCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHH
Confidence 111111222111110
Q ss_pred ---------------------------------------------------------------------ceEEEEeccCc
Q 003887 404 ---------------------------------------------------------------------RQTLLFSATMP 414 (789)
Q Consensus 404 ---------------------------------------------------------------------~q~ll~SATl~ 414 (789)
.++.+||.|..
T Consensus 307 A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~ 386 (796)
T PRK12906 307 ANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAK 386 (796)
T ss_pred HHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCH
Confidence 12223333332
Q ss_pred HHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHHHHhcCCC-CCCCcEEEEecccccHHHHHHHHHHc
Q 003887 415 RKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGM-IDDGDVLVFASKKTTVDEIESQLAQK 493 (789)
Q Consensus 415 ~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~-~~~~kvLVF~~s~~~a~~l~~~L~~~ 493 (789)
....++ ...++-++.......+....+. .-.++.....|+..+.+.+... ....++||||+++..++.|+..|.+.
T Consensus 387 ~e~~Ef-~~iY~l~vv~IPtnkp~~r~d~--~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~ 463 (796)
T PRK12906 387 TEEEEF-REIYNMEVITIPTNRPVIRKDS--PDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEA 463 (796)
T ss_pred HHHHHH-HHHhCCCEEEcCCCCCeeeeeC--CCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHC
Confidence 221111 1112211111111111101000 1112223456777887777543 24569999999999999999999999
Q ss_pred CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCC---Ccc-----EEEEEcCCCCHHHHHHHHhhcCCCC
Q 003887 494 GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIK---SIK-----SVVNFDIARDMDMHVHRIGRTGRAG 565 (789)
Q Consensus 494 g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~---~v~-----~VI~~d~p~s~~~y~QriGR~gR~G 565 (789)
++++.+||+.+.+.++..+...++.|. |+|||++++||+||+ +|. |||+++.|.+...|.|++||+||.|
T Consensus 464 gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG 541 (796)
T PRK12906 464 GIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQG 541 (796)
T ss_pred CCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCC
Confidence 999999999999888888888777776 999999999999995 899 9999999999999999999999999
Q ss_pred CCCeEEEEEEccccHH
Q 003887 566 DKDGTAYTLVTQKEAR 581 (789)
Q Consensus 566 ~~~G~~i~l~~~~d~~ 581 (789)
.+|.+.+|++.+|.-
T Consensus 542 -~~G~s~~~~sleD~l 556 (796)
T PRK12906 542 -DPGSSRFYLSLEDDL 556 (796)
T ss_pred -CCcceEEEEeccchH
Confidence 789999999988653
No 99
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=1.6e-25 Score=253.74 Aligned_cols=310 Identities=20% Similarity=0.201 Sum_probs=234.2
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003887 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (789)
Q Consensus 247 ~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~ 326 (789)
.|-++|++||-++..|..+++.|.|.+|||+++-.++...- .++.++++..|-++|.+|-++.++.-+...+
T Consensus 297 elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq--------~h~TR~iYTSPIKALSNQKfRDFk~tF~Dvg 368 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ--------KHMTRTIYTSPIKALSNQKFRDFKETFGDVG 368 (1248)
T ss_pred CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH--------hhccceEecchhhhhccchHHHHHHhccccc
Confidence 68899999999999999999999999999998766654332 3467799999999999999888887654322
Q ss_pred cEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcCCCceE
Q 003887 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 406 (789)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ 406 (789)
+++|...... .+.++|+|.+.|..++.++..-++++++||+||+|.+-|...+..+..++-.+|+..++
T Consensus 369 ----LlTGDvqinP-------eAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~ 437 (1248)
T KOG0947|consen 369 ----LLTGDVQINP-------EASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNF 437 (1248)
T ss_pred ----eeecceeeCC-------CcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccceE
Confidence 6777654433 47899999999999999988889999999999999999988888888999999999999
Q ss_pred EEEeccCcHHHHHHHHHHhCC-CeEEeeccccCccccceEEEEecC----------------------------------
Q 003887 407 LLFSATMPRKVEKLAREILSD-PVRVTVGEVGMANEDITQVVHVIP---------------------------------- 451 (789)
Q Consensus 407 ll~SATl~~~v~~l~~~~l~~-p~~i~i~~~~~~~~~i~q~~~~~~---------------------------------- 451 (789)
|++|||.|+.. +++.|+..- -..|.+........++++.+..-.
T Consensus 438 IlLSATVPN~~-EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~ 516 (1248)
T KOG0947|consen 438 ILLSATVPNTL-EFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVE 516 (1248)
T ss_pred EEEeccCCChH-HHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccc
Confidence 99999999774 567776532 111222111111111111110000
Q ss_pred ------------------------------CCcc---hHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHc-----
Q 003887 452 ------------------------------SDAE---KLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK----- 493 (789)
Q Consensus 452 ------------------------------~~~~---k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~----- 493 (789)
.... .+..|+..|.+. .--+++|||-++..|+..+++|...
T Consensus 517 ~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~-~lLP~VvFvFSkkrCde~a~~L~~~nL~~~ 595 (1248)
T KOG0947|consen 517 KSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKK-NLLPVVVFVFSKKRCDEYADYLTNLNLTDS 595 (1248)
T ss_pred cccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhc-ccCceEEEEEccccHHHHHHHHhccCcccc
Confidence 0001 122334444321 2238999999999999999998653
Q ss_pred ----------------------------------CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCc
Q 003887 494 ----------------------------------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSI 539 (789)
Q Consensus 494 ----------------------------------g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v 539 (789)
--.++++||++-+--++-+.-.|..|-++||+||..+++|+|.|.-
T Consensus 596 ~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPAR 675 (1248)
T KOG0947|consen 596 KEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPAR 675 (1248)
T ss_pred hhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCce
Confidence 1237899999999999999999999999999999999999999975
Q ss_pred cEEEEEcCC---------CCHHHHHHHHhhcCCCC-CCCeEEEEEEccc
Q 003887 540 KSVVNFDIA---------RDMDMHVHRIGRTGRAG-DKDGTAYTLVTQK 578 (789)
Q Consensus 540 ~~VI~~d~p---------~s~~~y~QriGR~gR~G-~~~G~~i~l~~~~ 578 (789)
.+|+ -.+- -.+-+|.|+.||+||.| ...|+++++....
T Consensus 676 tvVF-~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 676 TVVF-SSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred eEEe-eehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 4444 3322 26889999999999999 6678888776554
No 100
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.93 E-value=2.9e-25 Score=238.47 Aligned_cols=344 Identities=21% Similarity=0.287 Sum_probs=248.7
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEccC-CChh--hHHHHHHHHHHHhcCcccccC-----------------------C
Q 003887 244 GYEKPTSIQCQALPIILSGRDIIGIAKT-GSGK--TAAFVLPMIVHIMDQPELQKE-----------------------E 297 (789)
Q Consensus 244 g~~~ptpiQ~~ai~~il~grdvl~~a~T-GsGK--Tla~llp~l~~l~~~~~~~~~-----------------------~ 297 (789)
.-..+|+.|.+.+..+.+++|++..-.| +.|+ +-.|++++|+|+++.+.+..+ .
T Consensus 213 ~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 213 KSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred ccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 3457899999999999999999875332 3444 567999999999865432211 2
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCc---------EEEEEEcC--------CChHHHHHHHh--------------
Q 003887 298 GPIGVICAPTRELAHQIYLETKKFAKSHGI---------RVSAVYGG--------MSKLDQFKELK-------------- 346 (789)
Q Consensus 298 gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i---------~v~~~~gg--------~~~~~~~~~l~-------------- 346 (789)
.|+||||||+|+-|..+++.+..++...+- +...-|+| .++.+..+.+.
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 599999999999999999999988543211 11112222 11112222221
Q ss_pred -----------cCCcEEEeCHHHHHHHHhh------ccccccceeEEEEcccchhccCCChHHHHHHHhhc---CCC---
Q 003887 347 -----------AGCEIVIATPGRLIDMLKM------KALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI---RPD--- 403 (789)
Q Consensus 347 -----------~~~dIiV~Tp~~L~~~l~~------~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~---~~~--- 403 (789)
..+|||||+|-.|..++.. ....|++|.++|||.||.|+..+|+ .+..|+.++ |..
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwE-hl~~ifdHLn~~P~k~h~ 451 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWE-HLLHIFDHLNLQPSKQHD 451 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHH-HHHHHHHHhhcCcccccC
Confidence 2489999999999999963 2345899999999999988766554 445555444 321
Q ss_pred ------------------ceEEEEeccCcHHHHHHHHHHhCCCe-EEee------ccccCccccceEEEEecC------C
Q 003887 404 ------------------RQTLLFSATMPRKVEKLAREILSDPV-RVTV------GEVGMANEDITQVVHVIP------S 452 (789)
Q Consensus 404 ------------------~q~ll~SATl~~~v~~l~~~~l~~p~-~i~i------~~~~~~~~~i~q~~~~~~------~ 452 (789)
+|+|+||+...+.+..++..+|.+.. .+.. +........+.|.+..+. .
T Consensus 452 ~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~ 531 (698)
T KOG2340|consen 452 VDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIET 531 (698)
T ss_pred CChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccC
Confidence 69999999999999999999987632 1111 122222333444443322 2
Q ss_pred CcchHHHHHHhcC-CCCC--CCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehh
Q 003887 453 DAEKLPWLLEKLP-GMID--DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDV 529 (789)
Q Consensus 453 ~~~k~~~L~~~L~-~~~~--~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v 529 (789)
...++..++..+- ++.. ...+|||++++-+..+|.++|++..+.++.||.+.++..-.++.+.|-.|...||+.|..
T Consensus 532 ~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER 611 (698)
T KOG2340|consen 532 PDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTER 611 (698)
T ss_pred chHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehh
Confidence 3456666655442 3222 237899999999999999999999999999999999999999999999999999999999
Q ss_pred hh--ccCCCCCccEEEEEcCCCCHHHHHH---HHhhcCCCCC---CCeEEEEEEccccHHHHHHHHH
Q 003887 530 AA--RGLDIKSIKSVVNFDIARDMDMHVH---RIGRTGRAGD---KDGTAYTLVTQKEARFAGELVN 588 (789)
Q Consensus 530 ~~--~GlDI~~v~~VI~~d~p~s~~~y~Q---riGR~gR~G~---~~G~~i~l~~~~d~~~~~~l~~ 588 (789)
++ +..+|.+|+.||+|.+|.+|..|.- +++|+.-.|+ ..-.|.+|+++.|.--+..++-
T Consensus 612 ~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ivG 678 (698)
T KOG2340|consen 612 AHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIVG 678 (698)
T ss_pred hhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhhh
Confidence 88 8999999999999999999999954 4456544441 1257888999988877766653
No 101
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=9.5e-26 Score=249.97 Aligned_cols=310 Identities=21% Similarity=0.247 Sum_probs=235.8
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003887 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (789)
Q Consensus 247 ~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~ 326 (789)
.+-|+|.++|.++-++..+|+.|-|.+|||.++-.++...+ .+..+|++..|-++|.+|-++++..-++
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sL--------r~kQRVIYTSPIKALSNQKYREl~~EF~--- 197 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSL--------REKQRVIYTSPIKALSNQKYRELLEEFK--- 197 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHH--------HhcCeEEeeChhhhhcchhHHHHHHHhc---
Confidence 57899999999999999999999999999999888777666 3467899999999999999999887654
Q ss_pred cEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcCCCceE
Q 003887 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 406 (789)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ 406 (789)
.|.+.+|...... .+..+|+|.+.|..++.++.--+..+.+||+||+|.|-|...+..+..-+-.++++.+.
T Consensus 198 -DVGLMTGDVTInP-------~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~ 269 (1041)
T KOG0948|consen 198 -DVGLMTGDVTINP-------DASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRF 269 (1041)
T ss_pred -ccceeecceeeCC-------CCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceE
Confidence 3455666654433 37789999999999999888789999999999999999987776777777788999999
Q ss_pred EEEeccCcHHHHHHHHHHhC---CCeEEeeccccCccccceEEE---------EecCCC----cchHHHHHHhcCCCC--
Q 003887 407 LLFSATMPRKVEKLAREILS---DPVRVTVGEVGMANEDITQVV---------HVIPSD----AEKLPWLLEKLPGMI-- 468 (789)
Q Consensus 407 ll~SATl~~~v~~l~~~~l~---~p~~i~i~~~~~~~~~i~q~~---------~~~~~~----~~k~~~L~~~L~~~~-- 468 (789)
+++|||+|+. .+++.|++. .|..+.... ....++.+.+ .+++.. .+.+......|....
T Consensus 270 VFLSATiPNA-~qFAeWI~~ihkQPcHVVYTd--yRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~ 346 (1041)
T KOG0948|consen 270 VFLSATIPNA-RQFAEWICHIHKQPCHVVYTD--YRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGES 346 (1041)
T ss_pred EEEeccCCCH-HHHHHHHHHHhcCCceEEeec--CCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCC
Confidence 9999999976 567888764 455444322 1222222221 112110 111222222221110
Q ss_pred -----------------------------------CCCcEEEEecccccHHHHHHHHHHc--------------------
Q 003887 469 -----------------------------------DDGDVLVFASKKTTVDEIESQLAQK-------------------- 493 (789)
Q Consensus 469 -----------------------------------~~~kvLVF~~s~~~a~~l~~~L~~~-------------------- 493 (789)
.-.+||||+-++++|+.++-.+.+.
T Consensus 347 ~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~ 426 (1041)
T KOG0948|consen 347 DGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAID 426 (1041)
T ss_pred ccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHH
Confidence 1137999999999999998887653
Q ss_pred -------------------CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEE----EcC---
Q 003887 494 -------------------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN----FDI--- 547 (789)
Q Consensus 494 -------------------g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~----~d~--- 547 (789)
.-.++++|+++-+--++-+.-.|..|-+++|.||...+.|||.|.-++|+- ||-
T Consensus 427 ~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~f 506 (1041)
T KOG0948|consen 427 QLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKF 506 (1041)
T ss_pred hcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcce
Confidence 123788999999999999999999999999999999999999997544441 221
Q ss_pred -CCCHHHHHHHHhhcCCCC-CCCeEEEEEEccc
Q 003887 548 -ARDMDMHVHRIGRTGRAG-DKDGTAYTLVTQK 578 (789)
Q Consensus 548 -p~s~~~y~QriGR~gR~G-~~~G~~i~l~~~~ 578 (789)
+-+.-.|+|+.||+||.| ...|.||+++...
T Consensus 507 RwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 507 RWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred eeecccceEEecccccccCCCCCceEEEEecCc
Confidence 236678999999999999 5679999999764
No 102
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.93 E-value=3.2e-24 Score=262.61 Aligned_cols=303 Identities=17% Similarity=0.256 Sum_probs=198.4
Q ss_pred CCCcHHHHHHHHHHH----c-CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHH
Q 003887 246 EKPTSIQCQALPIIL----S-GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK 320 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il----~-grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k 320 (789)
..|+++|.+||..+. . .+.+|++++||+|||.++ +.++..+++. ...+++|||||+++|+.|+.+.++.
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~ta-i~li~~L~~~-----~~~~rVLfLvDR~~L~~Qa~~~F~~ 485 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTA-IALMYRLLKA-----KRFRRILFLVDRSALGEQAEDAFKD 485 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHH-HHHHHHHHhc-----CccCeEEEEecHHHHHHHHHHHHHh
Confidence 358999999998775 2 368999999999999874 4445555443 2346799999999999999999888
Q ss_pred HhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhc-----cccccceeEEEEcccchhcc---------
Q 003887 321 FAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK-----ALTMSRVTYLVLDEADRMFD--------- 386 (789)
Q Consensus 321 ~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~-----~~~l~~i~~lVlDEah~m~~--------- 386 (789)
+.......+..+++....... .......|+|||++.|...+... ...+..+++||+||||+...
T Consensus 486 ~~~~~~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~ 563 (1123)
T PRK11448 486 TKIEGDQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGE 563 (1123)
T ss_pred cccccccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccch
Confidence 732211111112221100111 11234789999999998765321 24567899999999998531
Q ss_pred C------CChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCe---------------------EEeec--ccc
Q 003887 387 L------GFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPV---------------------RVTVG--EVG 437 (789)
Q Consensus 387 ~------~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~---------------------~i~i~--~~~ 437 (789)
. .+...++.++.++ +...|+||||+...... +++.|+ .+... ..+
T Consensus 564 ~~~~~~~~~~~~yr~iL~yF--dA~~IGLTATP~r~t~~----~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~g 637 (1123)
T PRK11448 564 LQFRDQLDYVSKYRRVLDYF--DAVKIGLTATPALHTTE----IFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEG 637 (1123)
T ss_pred hccchhhhHHHHHHHHHhhc--CccEEEEecCCccchhH----HhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccc
Confidence 0 1235667777755 35679999998654322 222322 11110 000
Q ss_pred Ccccc---c---eE---EE--EecCCC-------cc-------hH----HHHHHhcCCCCCCCcEEEEecccccHHHHHH
Q 003887 438 MANED---I---TQ---VV--HVIPSD-------AE-------KL----PWLLEKLPGMIDDGDVLVFASKKTTVDEIES 488 (789)
Q Consensus 438 ~~~~~---i---~q---~~--~~~~~~-------~~-------k~----~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~ 488 (789)
..... + .. .+ ..++.. .. .. ..|.+.+... ..+++||||.++.+|+.+++
T Consensus 638 i~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~-~~~KtiIF~~s~~HA~~i~~ 716 (1123)
T PRK11448 638 IHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPT-GEGKTLIFAATDAHADMVVR 716 (1123)
T ss_pred ccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhcc-CCCcEEEEEcCHHHHHHHHH
Confidence 00000 0 00 00 000000 00 00 1122223222 24799999999999999999
Q ss_pred HHHHc------CC---ceeeccCCCCHHHHHHHHHHhhcCCc-cEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHH
Q 003887 489 QLAQK------GF---KAAALHGDKDQASRMEILQKFKSGVY-HVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRI 558 (789)
Q Consensus 489 ~L~~~------g~---~v~~lhg~~~~~eR~~~l~~F~~G~~-~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~Qri 558 (789)
.|.+. ++ .+..+||+++ ++..+++.|+++.. +|||+++++.+|+|+|.|.+||++.++.|...|+|++
T Consensus 717 ~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmI 794 (1123)
T PRK11448 717 LLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQML 794 (1123)
T ss_pred HHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHH
Confidence 88753 22 4567899886 46789999999887 5899999999999999999999999999999999999
Q ss_pred hhcCCCC
Q 003887 559 GRTGRAG 565 (789)
Q Consensus 559 GR~gR~G 565 (789)
||+.|.-
T Consensus 795 GRgtR~~ 801 (1123)
T PRK11448 795 GRATRLC 801 (1123)
T ss_pred hhhccCC
Confidence 9999975
No 103
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.93 E-value=1e-24 Score=249.55 Aligned_cols=344 Identities=21% Similarity=0.261 Sum_probs=249.1
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHH--HHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcH
Q 003887 231 GFSTQLMHAISKQGYEKPTSIQCQAL--PIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTR 308 (789)
Q Consensus 231 ~l~~~l~~~l~~~g~~~ptpiQ~~ai--~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTr 308 (789)
+++....-..+..|..++..||.+|+ +.++.++++|+.+||+.|||+++-+.|+..++.. +..++.++|..
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~-------rr~~llilp~v 279 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR-------RRNVLLILPYV 279 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH-------hhceeEeccee
Confidence 33333444556678999999999998 6688999999999999999999999999887654 34589999999
Q ss_pred HHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhh--ccccccceeEEEEcccchhcc
Q 003887 309 ELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM--KALTMSRVTYLVLDEADRMFD 386 (789)
Q Consensus 309 eLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~--~~~~l~~i~~lVlDEah~m~~ 386 (789)
..++.-...+..+....|+.+.+++|..+.... ...-+|.|||.++-..++.. ..-.+..+++|||||.|.+.+
T Consensus 280 siv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d 355 (1008)
T KOG0950|consen 280 SIVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGD 355 (1008)
T ss_pred ehhHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeec
Confidence 999988899999999999999998877665433 22378999999987776654 223467889999999999999
Q ss_pred CCChHHHHHHHhhc-----CCCceEEEEeccCcHHHHHHHHHHhCCCeEEe-eccccCcc-----ccceEE-----EEec
Q 003887 387 LGFEPQIRSIVGQI-----RPDRQTLLFSATMPRKVEKLAREILSDPVRVT-VGEVGMAN-----EDITQV-----VHVI 450 (789)
Q Consensus 387 ~~f~~~i~~il~~~-----~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~-i~~~~~~~-----~~i~q~-----~~~~ 450 (789)
.+....+..++..+ ....|+|+||||+|+. . ++..++..-+... ........ ..+.+. +..+
T Consensus 356 ~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~-~-lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~i 433 (1008)
T KOG0950|consen 356 KGRGAILELLLAKILYENLETSVQIIGMSATIPNN-S-LLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREI 433 (1008)
T ss_pred cccchHHHHHHHHHHHhccccceeEeeeecccCCh-H-HHHHHhhhhheecccCcccchhccCCCcccccchhhHHHHHh
Confidence 98888888777655 2346899999999864 2 3333333211111 00000000 000000 0000
Q ss_pred C-------CCcchHHHHHHhcCCCCCCC-cEEEEecccccHHHHHHHHHHc-----------------------------
Q 003887 451 P-------SDAEKLPWLLEKLPGMIDDG-DVLVFASKKTTVDEIESQLAQK----------------------------- 493 (789)
Q Consensus 451 ~-------~~~~k~~~L~~~L~~~~~~~-kvLVF~~s~~~a~~l~~~L~~~----------------------------- 493 (789)
. .+.+- ..++.+..+...++ ++||||+++..|+.++..+...
T Consensus 434 a~l~~~~~g~~dp-D~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ 512 (1008)
T KOG0950|consen 434 ANLYSSNLGDEDP-DHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGI 512 (1008)
T ss_pred hhhhhhhcccCCC-cceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcc
Confidence 0 00000 12233333333344 5999999999999888665431
Q ss_pred ---------CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEc----CCCCHHHHHHHHhh
Q 003887 494 ---------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFD----IARDMDMHVHRIGR 560 (789)
Q Consensus 494 ---------g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d----~p~s~~~y~QriGR 560 (789)
.+.++.+|.+++..+|+.+...|++|.+.||+||+.++.|+|+|..+++|-.- .......|.|++||
T Consensus 513 ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GR 592 (1008)
T KOG0950|consen 513 LDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGR 592 (1008)
T ss_pred cchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhh
Confidence 34588999999999999999999999999999999999999999877777432 23467899999999
Q ss_pred cCCCC-CCCeEEEEEEccccHHHHHHHHH
Q 003887 561 TGRAG-DKDGTAYTLVTQKEARFAGELVN 588 (789)
Q Consensus 561 ~gR~G-~~~G~~i~l~~~~d~~~~~~l~~ 588 (789)
|||+| ...|.+++++.+.+.+...+++.
T Consensus 593 AGR~gidT~GdsiLI~k~~e~~~~~~lv~ 621 (1008)
T KOG0950|consen 593 AGRTGIDTLGDSILIIKSSEKKRVRELVN 621 (1008)
T ss_pred hhhcccccCcceEEEeeccchhHHHHHHh
Confidence 99998 45699999999998876665543
No 104
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.92 E-value=4.1e-24 Score=247.31 Aligned_cols=325 Identities=21% Similarity=0.286 Sum_probs=221.3
Q ss_pred CCCcHHHHHHHHHHH---cC-CCEEEEccCCChhhHHHHHHHHHHHhcCc-ccccCCCCEEEEEcCcHHHHHHHHHHHHH
Q 003887 246 EKPTSIQCQALPIIL---SG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQP-ELQKEEGPIGVICAPTRELAHQIYLETKK 320 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il---~g-rdvl~~a~TGsGKTla~llp~l~~l~~~~-~~~~~~gp~vLIl~PTreLa~Qi~~~~~k 320 (789)
..++.||++++.|+. .+ -+.|+|..||.|||++.+--+....++++ ....-+..-.|||||. .|+-.|..++.+
T Consensus 974 a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~k 1052 (1549)
T KOG0392|consen 974 AKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKK 1052 (1549)
T ss_pred HHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHH
Confidence 357899999999974 33 48999999999999996544444444331 1111122237999997 799999999999
Q ss_pred HhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhc
Q 003887 321 FAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI 400 (789)
Q Consensus 321 ~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~ 400 (789)
|++. +++..+.|+.......+.-.+.++|||++|+.+..-+. .+.-..|.|+|+||-|-|.+. ...+.+.+..+
T Consensus 1053 f~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d--~l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL 1126 (1549)
T KOG0392|consen 1053 FFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVD--YLIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQL 1126 (1549)
T ss_pred hcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHH--HHHhcccceEEecCcceecch--HHHHHHHHHHH
Confidence 9985 77777777766666666666678999999988864332 223346889999999988764 44555666666
Q ss_pred CCCceEEEEecc-CcHHHHHHHHHH---hC--------------C-----------------------------------
Q 003887 401 RPDRQTLLFSAT-MPRKVEKLAREI---LS--------------D----------------------------------- 427 (789)
Q Consensus 401 ~~~~q~ll~SAT-l~~~v~~l~~~~---l~--------------~----------------------------------- 427 (789)
+...+ +++|.| +.+++.+|+.-| |. .
T Consensus 1127 ~a~hR-LILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LR 1205 (1549)
T KOG0392|consen 1127 RANHR-LILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLR 1205 (1549)
T ss_pred hhcce-EEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHH
Confidence 65544 556666 444444442111 00 0
Q ss_pred ----------CeEEe-----------------------------e--ccccCc--cccceEEE-----------EecC--
Q 003887 428 ----------PVRVT-----------------------------V--GEVGMA--NEDITQVV-----------HVIP-- 451 (789)
Q Consensus 428 ----------p~~i~-----------------------------i--~~~~~~--~~~i~q~~-----------~~~~-- 451 (789)
|..|. + +..... ...|.|.. .+..
T Consensus 1206 RlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~ 1285 (1549)
T KOG0392|consen 1206 RLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPV 1285 (1549)
T ss_pred HHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCC
Confidence 00000 0 000000 00000000 0000
Q ss_pred ---------------------CCcchHHHHHHhcCCCC---------------CCCcEEEEecccccHHHHHHHHHHcC-
Q 003887 452 ---------------------SDAEKLPWLLEKLPGMI---------------DDGDVLVFASKKTTVDEIESQLAQKG- 494 (789)
Q Consensus 452 ---------------------~~~~k~~~L~~~L~~~~---------------~~~kvLVF~~s~~~a~~l~~~L~~~g- 494 (789)
....|+..|-++|.... .++++||||+-+..++.+.+-|.+..
T Consensus 1286 hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~m 1365 (1549)
T KOG0392|consen 1286 HPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYM 1365 (1549)
T ss_pred cchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhc
Confidence 12345555555553321 23589999999999999999987653
Q ss_pred --CceeeccCCCCHHHHHHHHHHhhcC-CccEEE-eehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCe-
Q 003887 495 --FKAAALHGDKDQASRMEILQKFKSG-VYHVLI-ATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDG- 569 (789)
Q Consensus 495 --~~v~~lhg~~~~~eR~~~l~~F~~G-~~~VLV-aT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G- 569 (789)
+....|.|..++.+|.++.++|+++ .++||+ +|.+.+-|||+.++++||+++-.|||..-+|++.|++|.|+++-
T Consensus 1366 psVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvV 1445 (1549)
T KOG0392|consen 1366 PSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVV 1445 (1549)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceee
Confidence 3455899999999999999999998 677755 67999999999999999999999999999999999999997654
Q ss_pred EEEEEEccc
Q 003887 570 TAYTLVTQK 578 (789)
Q Consensus 570 ~~i~l~~~~ 578 (789)
.+|.|++..
T Consensus 1446 NVyRlItrG 1454 (1549)
T KOG0392|consen 1446 NVYRLITRG 1454 (1549)
T ss_pred eeeeehhcc
Confidence 467788775
No 105
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=3.2e-24 Score=249.75 Aligned_cols=316 Identities=17% Similarity=0.242 Sum_probs=222.0
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003887 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (789)
Q Consensus 247 ~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~ 326 (789)
.|+++|.-+--.+ .+.-|+.++||.|||+++++|++.+++. +..|.||+|++.||.|..+++..+...+|
T Consensus 82 ~~ydVQliGgl~L--~~G~IaEm~TGEGKTL~a~lp~~l~al~--------g~~VhIvT~ndyLA~RD~e~m~~l~~~lG 151 (908)
T PRK13107 82 RHFDVQLLGGMVL--DSNRIAEMRTGEGKTLTATLPAYLNALT--------GKGVHVITVNDYLARRDAENNRPLFEFLG 151 (908)
T ss_pred CcCchHHhcchHh--cCCccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEeCCHHHHHHHHHHHHHHHHhcC
Confidence 4566666554444 4456899999999999999999987753 44499999999999999999999999999
Q ss_pred cEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHH-HHHHhhc-ccc-----ccceeEEEEcccchhccCC-----------
Q 003887 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMK-ALT-----MSRVTYLVLDEADRMFDLG----------- 388 (789)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L-~~~l~~~-~~~-----l~~i~~lVlDEah~m~~~~----------- 388 (789)
++|.+++++.+.... .-.-.+||+++||+.| .++|+.+ .+. ...+.++||||||.|+-..
T Consensus 152 lsv~~i~~~~~~~~r--~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~ 229 (908)
T PRK13107 152 LTVGINVAGLGQQEK--KAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAA 229 (908)
T ss_pred CeEEEecCCCCHHHH--HhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCC
Confidence 999999998876432 2223699999999999 8888665 223 3678999999999875311
Q ss_pred -----ChHHHHHHHhhcC-------------------CCceEEEEe----------------------------------
Q 003887 389 -----FEPQIRSIVGQIR-------------------PDRQTLLFS---------------------------------- 410 (789)
Q Consensus 389 -----f~~~i~~il~~~~-------------------~~~q~ll~S---------------------------------- 410 (789)
+...+..++..+. ...+.+.+|
T Consensus 230 ~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~ 309 (908)
T PRK13107 230 EDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHH 309 (908)
T ss_pred ccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHH
Confidence 1111111111111 011122222
Q ss_pred --------------------------------------------------------------------------------
Q 003887 411 -------------------------------------------------------------------------------- 410 (789)
Q Consensus 411 -------------------------------------------------------------------------------- 410 (789)
T Consensus 310 i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~G 389 (908)
T PRK13107 310 VNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAG 389 (908)
T ss_pred HHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhc
Confidence
Q ss_pred --ccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHHHHhcCCCCC-CCcEEEEecccccHHHHH
Q 003887 411 --ATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMID-DGDVLVFASKKTTVDEIE 487 (789)
Q Consensus 411 --ATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~-~~kvLVF~~s~~~a~~l~ 487 (789)
.|......++.. +++-.+.......+....+... .++.....|+..+++.+..... +.+|||||+++..++.|+
T Consensus 390 MTGTa~te~~Ef~~-iY~l~Vv~IPTnkp~~R~d~~d--~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls 466 (908)
T PRK13107 390 MTGTADTEAFEFQH-IYGLDTVVVPTNRPMVRKDMAD--LVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLA 466 (908)
T ss_pred ccCCChHHHHHHHH-HhCCCEEECCCCCCccceeCCC--cEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHH
Confidence 111111111110 0111111100000000111111 1222345677777777665443 458999999999999999
Q ss_pred HHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCC------------------------------
Q 003887 488 SQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIK------------------------------ 537 (789)
Q Consensus 488 ~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~------------------------------ 537 (789)
..|...++++..||+.+.+.++..+.+.|+.|. |+|||++++||+||.
T Consensus 467 ~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (908)
T PRK13107 467 RLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIR 544 (908)
T ss_pred HHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhh
Confidence 999999999999999999999999999999998 999999999999997
Q ss_pred -------CccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccH
Q 003887 538 -------SIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (789)
Q Consensus 538 -------~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~ 580 (789)
+=-+||--..+.|..--.|-.||+||.| .+|.+..|++-+|.
T Consensus 545 ~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQG-DPGss~f~lSlED~ 593 (908)
T PRK13107 545 HDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQG-DAGSSRFYLSMEDS 593 (908)
T ss_pred HHHHHHcCCCEEEecccCchHHHHhhhhcccccCC-CCCceeEEEEeCcH
Confidence 2237888888999988999999999999 68999999998875
No 106
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.92 E-value=6.3e-24 Score=209.10 Aligned_cols=166 Identities=35% Similarity=0.576 Sum_probs=142.8
Q ss_pred cHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcE
Q 003887 249 TSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIR 328 (789)
Q Consensus 249 tpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~ 328 (789)
||+|.++++.+++++++++.+|||+|||++|+++++..+... ...++||++|+++|+.|+.+.+.+++...+++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~------~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 74 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG------KDARVLIIVPTRALAEQQFERLRKFFSNTNVR 74 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT------SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC------CCceEEEEeecccccccccccccccccccccc
Confidence 799999999999999999999999999999999999988653 13479999999999999999999998877889
Q ss_pred EEEEEcCCChH-HHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcC--CCce
Q 003887 329 VSAVYGGMSKL-DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR--PDRQ 405 (789)
Q Consensus 329 v~~~~gg~~~~-~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~--~~~q 405 (789)
+..++++.... .....+..+++|+|+||++|.+++......+.++++|||||+|.+..+.+...+..++..+. ...|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~ 154 (169)
T PF00270_consen 75 VVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQ 154 (169)
T ss_dssp EEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSE
T ss_pred cccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCc
Confidence 99999998865 34444555799999999999999987655777899999999999999888888888888773 3589
Q ss_pred EEEEeccCcHHHHHH
Q 003887 406 TLLFSATMPRKVEKL 420 (789)
Q Consensus 406 ~ll~SATl~~~v~~l 420 (789)
++++|||+++.++.+
T Consensus 155 ~i~~SAT~~~~~~~~ 169 (169)
T PF00270_consen 155 IILLSATLPSNVEKL 169 (169)
T ss_dssp EEEEESSSTHHHHHH
T ss_pred EEEEeeCCChhHhhC
Confidence 999999999776653
No 107
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.91 E-value=1.9e-22 Score=207.51 Aligned_cols=306 Identities=20% Similarity=0.255 Sum_probs=213.6
Q ss_pred CCCcHHHHHHHHHHH----cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003887 246 EKPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il----~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~ 321 (789)
-+++|.|..+-..++ +.+++|+.|-||+|||-. +.+.+..++++ |.++.|..|....|..++..++..
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~-------G~~vciASPRvDVclEl~~Rlk~a 167 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQ-------GGRVCIASPRVDVCLELYPRLKQA 167 (441)
T ss_pred cccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhc-------CCeEEEecCcccchHHHHHHHHHh
Confidence 378999998876655 568999999999999985 67777777655 778999999999999999888877
Q ss_pred hhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHH-HHHhhc
Q 003887 322 AKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIR-SIVGQI 400 (789)
Q Consensus 322 ~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~-~il~~~ 400 (789)
+. +..+.++||+....-. ..+||||...|+.+-+ .+++|||||+|..--.. ...+. .+-...
T Consensus 168 F~--~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP~~~-d~~L~~Av~~ar 230 (441)
T COG4098 168 FS--NCDIDLLYGDSDSYFR-------APLVVATTHQLLRFKQ-------AFDLLIIDEVDAFPFSD-DQSLQYAVKKAR 230 (441)
T ss_pred hc--cCCeeeEecCCchhcc-------ccEEEEehHHHHHHHh-------hccEEEEeccccccccC-CHHHHHHHHHhh
Confidence 64 5778889998765432 7899999988888653 56789999999753221 12223 333334
Q ss_pred CCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchH-----H-HHHHhcCCCC-CCCcE
Q 003887 401 RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKL-----P-WLLEKLPGMI-DDGDV 473 (789)
Q Consensus 401 ~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~-----~-~L~~~L~~~~-~~~kv 473 (789)
+...-+|.+|||+++.++.-+.. .+...+.+...-...+-+.-.+.++.....++ . .|...|.+.. .+.++
T Consensus 231 k~~g~~IylTATp~k~l~r~~~~--g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~ 308 (441)
T COG4098 231 KKEGATIYLTATPTKKLERKILK--GNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPV 308 (441)
T ss_pred cccCceEEEecCChHHHHHHhhh--CCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcE
Confidence 45667999999999776543332 12222333222222222333333443222222 1 3444444332 34589
Q ss_pred EEEecccccHHHHHHHHHHc-C-CceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEcCC--C
Q 003887 474 LVFASKKTTVDEIESQLAQK-G-FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIA--R 549 (789)
Q Consensus 474 LVF~~s~~~a~~l~~~L~~~-g-~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p--~ 549 (789)
|||+++....+.++..|++. . ..++.+|+.. ..|.+.++.|++|++.+||+|.+++||+.+|+|+++|.-.-- .
T Consensus 309 liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vf 386 (441)
T COG4098 309 LIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVF 386 (441)
T ss_pred EEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccc
Confidence 99999999999999999553 3 3456777643 368899999999999999999999999999999987754322 4
Q ss_pred CHHHHHHHHhhcCCCCCC-CeEEEEEEccccH
Q 003887 550 DMDMHVHRIGRTGRAGDK-DGTAYTLVTQKEA 580 (789)
Q Consensus 550 s~~~y~QriGR~gR~G~~-~G~~i~l~~~~d~ 580 (789)
+-...+|..||+||.-.+ .|.++.|-.-...
T Consensus 387 TesaLVQIaGRvGRs~~~PtGdv~FFH~G~sk 418 (441)
T COG4098 387 TESALVQIAGRVGRSLERPTGDVLFFHYGKSK 418 (441)
T ss_pred cHHHHHHHhhhccCCCcCCCCcEEEEeccchH
Confidence 677889999999998744 4555555443333
No 108
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.91 E-value=1.4e-23 Score=247.84 Aligned_cols=310 Identities=20% Similarity=0.242 Sum_probs=231.3
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003887 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (789)
Q Consensus 247 ~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~ 326 (789)
.|-++|++++.+|..+..+++||+||+|||++...++...+ .++.+++++.|.++|.+|.+.++........
T Consensus 119 ~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al--------~~~qrviYTsPIKALsNQKyrdl~~~fgdv~ 190 (1041)
T COG4581 119 ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALAL--------RDGQRVIYTSPIKALSNQKYRDLLAKFGDVA 190 (1041)
T ss_pred CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHH--------HcCCceEeccchhhhhhhHHHHHHHHhhhhh
Confidence 68899999999999999999999999999998777766555 3356699999999999999998887654221
Q ss_pred cEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcCCCceE
Q 003887 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 406 (789)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ 406 (789)
-.+.+++|..... .++.++|+|-+.|..++.++...+..+.+||+||+|.|.+...+..+..++-.++...|+
T Consensus 191 ~~vGL~TGDv~IN-------~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~~ 263 (1041)
T COG4581 191 DMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVRF 263 (1041)
T ss_pred hhccceecceeeC-------CCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCCCcE
Confidence 2345666665443 348899999999999999988889999999999999999998888888999999999999
Q ss_pred EEEeccCcHHHHHHHHHHhC---CCeEEeeccccCccccceEEEE-------ecCCCcc---------------------
Q 003887 407 LLFSATMPRKVEKLAREILS---DPVRVTVGEVGMANEDITQVVH-------VIPSDAE--------------------- 455 (789)
Q Consensus 407 ll~SATl~~~v~~l~~~~l~---~p~~i~i~~~~~~~~~i~q~~~-------~~~~~~~--------------------- 455 (789)
++||||+|+. +++..|+.. .|..+... .....+..+.+. .++....
T Consensus 264 v~LSATv~N~-~EF~~Wi~~~~~~~~~vv~t--~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~ 340 (1041)
T COG4581 264 VFLSATVPNA-EEFAEWIQRVHSQPIHVVST--EHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVR 340 (1041)
T ss_pred EEEeCCCCCH-HHHHHHHHhccCCCeEEEee--cCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhcc
Confidence 9999999976 566776652 23333221 111122222111 1111000
Q ss_pred -------------------------hHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHc-----------------
Q 003887 456 -------------------------KLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK----------------- 493 (789)
Q Consensus 456 -------------------------k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~----------------- 493 (789)
+...++..|.. ..--++|+||-++..|+.++..|...
T Consensus 341 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~-~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~ 419 (1041)
T COG4581 341 ETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDK-DNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIID 419 (1041)
T ss_pred ccCccccccccccccccCCcccccccchHHHhhhhh-hcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHH
Confidence 00011111111 01237999999999998888776521
Q ss_pred -----------CC-------------ceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEcC--
Q 003887 494 -----------GF-------------KAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDI-- 547 (789)
Q Consensus 494 -----------g~-------------~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~-- 547 (789)
++ .++++|++|=+..|..+...|..|-++||+||.+++.|+|.|.- +||++..
T Consensus 420 ~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPar-tvv~~~l~K 498 (1041)
T COG4581 420 HAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPAR-TVVFTSLSK 498 (1041)
T ss_pred HHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCccc-ceeeeeeEE
Confidence 11 25689999999999999999999999999999999999999964 4444332
Q ss_pred -------CCCHHHHHHHHhhcCCCC-CCCeEEEEEEc
Q 003887 548 -------ARDMDMHVHRIGRTGRAG-DKDGTAYTLVT 576 (789)
Q Consensus 548 -------p~s~~~y~QriGR~gR~G-~~~G~~i~l~~ 576 (789)
+-++..|.|+.||+||.| ...|.++++-.
T Consensus 499 ~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 499 FDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred ecCCceeecChhHHHHhhhhhccccccccceEEEecC
Confidence 347999999999999999 55688888743
No 109
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.91 E-value=4.1e-24 Score=239.17 Aligned_cols=322 Identities=20% Similarity=0.290 Sum_probs=228.6
Q ss_pred CCcHHHHHHHHHHH----cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHh
Q 003887 247 KPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (789)
Q Consensus 247 ~ptpiQ~~ai~~il----~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~ 322 (789)
++-+||.-++.|+. .+-+.|++.+||.|||++ ++++|.+|.... ..||+ |||||...|- .|.+++.+||
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g----~~gpH-LVVvPsSTle-NWlrEf~kwC 471 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIG----NPGPH-LVVVPSSTLE-NWLREFAKWC 471 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcC----CCCCc-EEEecchhHH-HHHHHHHHhC
Confidence 37799999999975 456789999999999998 677888876653 35776 8999997765 7999999999
Q ss_pred hhcCcEEEEEEcCCChHHHHHHHh----cCCcEEEeCHHHHHHHH-hhccccccceeEEEEcccchhccCCChHHHHHHH
Q 003887 323 KSHGIRVSAVYGGMSKLDQFKELK----AGCEIVIATPGRLIDML-KMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIV 397 (789)
Q Consensus 323 ~~~~i~v~~~~gg~~~~~~~~~l~----~~~dIiV~Tp~~L~~~l-~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il 397 (789)
+ .++|..+||.......++... .+++|+|+||.....-- .+..+.-.++.++|+||+|.+.++.-+ .+..+
T Consensus 472 P--sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~Se-Ry~~L- 547 (941)
T KOG0389|consen 472 P--SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSE-RYKHL- 547 (941)
T ss_pred C--ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchH-HHHHh-
Confidence 8 689999999887766666543 25899999997664211 112233457899999999998876522 22222
Q ss_pred hhcCCCceEEEEeccC-cHHHHHHHHHH---hCC-----------------------------------------CeEEe
Q 003887 398 GQIRPDRQTLLFSATM-PRKVEKLAREI---LSD-----------------------------------------PVRVT 432 (789)
Q Consensus 398 ~~~~~~~q~ll~SATl-~~~v~~l~~~~---l~~-----------------------------------------p~~i~ 432 (789)
-.++ ..+.|++|.|+ .+++.+|+..+ |.+ |....
T Consensus 548 M~I~-An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILR 626 (941)
T KOG0389|consen 548 MSIN-ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILR 626 (941)
T ss_pred cccc-ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHH
Confidence 2223 33446677774 33333331110 000 00000
Q ss_pred ec--cccCccccceEEEEecC-----------------------------------------------------------
Q 003887 433 VG--EVGMANEDITQVVHVIP----------------------------------------------------------- 451 (789)
Q Consensus 433 i~--~~~~~~~~i~q~~~~~~----------------------------------------------------------- 451 (789)
-. .+-...+.-.+++.+|.
T Consensus 627 R~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~ 706 (941)
T KOG0389|consen 627 RLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRK 706 (941)
T ss_pred HHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHH
Confidence 00 00000000000000000
Q ss_pred ---------------------------------------------------CCcchHHHHHHhcCCCCCC-CcEEEEecc
Q 003887 452 ---------------------------------------------------SDAEKLPWLLEKLPGMIDD-GDVLVFASK 479 (789)
Q Consensus 452 ---------------------------------------------------~~~~k~~~L~~~L~~~~~~-~kvLVF~~s 479 (789)
-...|+..|..+|.+.... .+||||.+.
T Consensus 707 mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQF 786 (941)
T KOG0389|consen 707 MAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQF 786 (941)
T ss_pred HHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHH
Confidence 0345666666666665544 599999999
Q ss_pred cccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCC--ccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHH
Q 003887 480 KTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGV--YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHR 557 (789)
Q Consensus 480 ~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~--~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~Qr 557 (789)
....+.|...|...++.+..|.|.+...+|+.++..|...+ .-+|++|.+.+-|||+..+++||+||...||-+-.|+
T Consensus 787 TqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QA 866 (941)
T KOG0389|consen 787 TQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQA 866 (941)
T ss_pred HHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchh
Confidence 99999999999999999999999999999999999998753 4579999999999999999999999999999999999
Q ss_pred HhhcCCCCC-CCeEEEEEEccccH
Q 003887 558 IGRTGRAGD-KDGTAYTLVTQKEA 580 (789)
Q Consensus 558 iGR~gR~G~-~~G~~i~l~~~~d~ 580 (789)
-.||+|.|+ ++-++|.||+..-.
T Consensus 867 EDRcHRvGQtkpVtV~rLItk~TI 890 (941)
T KOG0389|consen 867 EDRCHRVGQTKPVTVYRLITKSTI 890 (941)
T ss_pred HHHHHhhCCcceeEEEEEEecCcH
Confidence 999999995 45677888887643
No 110
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.91 E-value=7.9e-23 Score=233.96 Aligned_cols=125 Identities=22% Similarity=0.391 Sum_probs=106.0
Q ss_pred chHHHHHHhcCCCCC-CCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCC--ccEEEeehhhh
Q 003887 455 EKLPWLLEKLPGMID-DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGV--YHVLIATDVAA 531 (789)
Q Consensus 455 ~k~~~L~~~L~~~~~-~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~--~~VLVaT~v~~ 531 (789)
.|+..|.-+|.++.. +.++|||++...+.+.|..+|.-+|+..+.|.|....++|...+++|+... +++|++|...+
T Consensus 1260 GKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSgg 1339 (1958)
T KOG0391|consen 1260 GKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGG 1339 (1958)
T ss_pred chHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCc
Confidence 344444444443332 358999999999999999999999999999999999999999999998864 56789999999
Q ss_pred ccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCC-CeEEEEEEcccc
Q 003887 532 RGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDK-DGTAYTLVTQKE 579 (789)
Q Consensus 532 ~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~-~G~~i~l~~~~d 579 (789)
.|||+.++++||+||..||+..-.|.-.||+|+|+. .-+.|.||+..-
T Consensus 1340 vGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~T 1388 (1958)
T KOG0391|consen 1340 VGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERT 1388 (1958)
T ss_pred cccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccch
Confidence 999999999999999999999999999999999943 456677887653
No 111
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.90 E-value=1.3e-22 Score=238.39 Aligned_cols=309 Identities=19% Similarity=0.273 Sum_probs=213.8
Q ss_pred HHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhh-cCcE
Q 003887 250 SIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS-HGIR 328 (789)
Q Consensus 250 piQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~-~~i~ 328 (789)
....+.+..+.+..-+|++++||||||++ +|.+. +...- ..+..+.++-|.|.-|..+++.+...... .|-.
T Consensus 53 ~~~~~i~~ai~~~~vvii~getGsGKTTq--lP~~l--le~g~---~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~ 125 (845)
T COG1643 53 AVRDEILKAIEQNQVVIIVGETGSGKTTQ--LPQFL--LEEGL---GIAGKIGCTQPRRLAARSVAERVAEELGEKLGET 125 (845)
T ss_pred HHHHHHHHHHHhCCEEEEeCCCCCChHHH--HHHHH--Hhhhc---ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCce
Confidence 34455566677778899999999999987 44322 22111 23456788999998887776655544322 2323
Q ss_pred EEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccc-hhccCCChHHHH-HHHhhcCCCceE
Q 003887 329 VSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD-RMFDLGFEPQIR-SIVGQIRPDRQT 406 (789)
Q Consensus 329 v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah-~m~~~~f~~~i~-~il~~~~~~~q~ 406 (789)
|.+.+-..+. ......|-++|.|.|+..+..+.. |+.+++||||||| |-++.+|.-.+. .++...+++.++
T Consensus 126 VGY~iRfe~~------~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKi 198 (845)
T COG1643 126 VGYSIRFESK------VSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKL 198 (845)
T ss_pred eeEEEEeecc------CCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceE
Confidence 3333222211 122478999999999999976664 9999999999999 566655544433 446666778999
Q ss_pred EEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcc-hHHHHHHhcCC--CCCCCcEEEEecccccH
Q 003887 407 LLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAE-KLPWLLEKLPG--MIDDGDVLVFASKKTTV 483 (789)
Q Consensus 407 ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~-k~~~L~~~L~~--~~~~~kvLVF~~s~~~a 483 (789)
|+||||+..+ . +..++.+.-.+.+.. ....+...+........ -...+...+.. ....|.+|||.+...+.
T Consensus 199 IimSATld~~--r-fs~~f~~apvi~i~G---R~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI 272 (845)
T COG1643 199 IIMSATLDAE--R-FSAYFGNAPVIEIEG---RTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREI 272 (845)
T ss_pred EEEecccCHH--H-HHHHcCCCCEEEecC---CccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHH
Confidence 9999999643 3 445555433333321 22233333322222222 12222222211 12468999999999999
Q ss_pred HHHHHHHHH----cCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEE--------EcC----
Q 003887 484 DEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN--------FDI---- 547 (789)
Q Consensus 484 ~~l~~~L~~----~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~--------~d~---- 547 (789)
+.+++.|.. ..+.+..|||.++..++.++++--..|+.+|++||++++.+|.|++|++||. |++
T Consensus 273 ~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~ 352 (845)
T COG1643 273 ERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGL 352 (845)
T ss_pred HHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCc
Confidence 999999987 3578999999999999999988888887889999999999999999999996 332
Q ss_pred ------CCCHHHHHHHHhhcCCCCCCCeEEEEEEccccH
Q 003887 548 ------ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (789)
Q Consensus 548 ------p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~ 580 (789)
|-+-.+..||.||+||.+ +|+||.|++.++.
T Consensus 353 ~~L~~~~ISqAsA~QRaGRAGR~~--pGicyRLyse~~~ 389 (845)
T COG1643 353 TRLETEPISKASADQRAGRAGRTG--PGICYRLYSEEDF 389 (845)
T ss_pred eeeeEEEechhhhhhhccccccCC--CceEEEecCHHHH
Confidence 335667789999999997 7999999997544
No 112
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.89 E-value=8.5e-22 Score=216.65 Aligned_cols=292 Identities=17% Similarity=0.210 Sum_probs=222.4
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHHhhhc-------------Cc------EEEEEEcCCChHHHHHHHhc----------
Q 003887 297 EGPIGVICAPTRELAHQIYLETKKFAKSH-------------GI------RVSAVYGGMSKLDQFKELKA---------- 347 (789)
Q Consensus 297 ~gp~vLIl~PTreLa~Qi~~~~~k~~~~~-------------~i------~v~~~~gg~~~~~~~~~l~~---------- 347 (789)
..|+||||||+|..|.+|++.+.+++... ++ ....-.....+...+..+..
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 46999999999999999999998887541 10 00000001122333444433
Q ss_pred ---------------CCcEEEeCHHHHHHHHhh------ccccccceeEEEEcccchh--ccCCChHHHHHHHhhcCCC-
Q 003887 348 ---------------GCEIVIATPGRLIDMLKM------KALTMSRVTYLVLDEADRM--FDLGFEPQIRSIVGQIRPD- 403 (789)
Q Consensus 348 ---------------~~dIiV~Tp~~L~~~l~~------~~~~l~~i~~lVlDEah~m--~~~~f~~~i~~il~~~~~~- 403 (789)
.+|||||+|-.|...+.. ....|++|+++|||.||.| .+|.+...+...++..|.+
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~ 195 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKS 195 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCC
Confidence 289999999999998874 3456999999999999954 5566666666666666532
Q ss_pred --------------------ceEEEEeccCcHHHHHHHHHHhCCCe---EEee-----ccccCccccceEEEEecCCC--
Q 003887 404 --------------------RQTLLFSATMPRKVEKLAREILSDPV---RVTV-----GEVGMANEDITQVVHVIPSD-- 453 (789)
Q Consensus 404 --------------------~q~ll~SATl~~~v~~l~~~~l~~p~---~i~i-----~~~~~~~~~i~q~~~~~~~~-- 453 (789)
||+|++|+...+++..+.+..|.|.. .+.. +........+.|.+..++..
T Consensus 196 ~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~ 275 (442)
T PF06862_consen 196 HDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSP 275 (442)
T ss_pred CCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCc
Confidence 79999999999999999999887632 2211 22234556778888776532
Q ss_pred ----cchHHHHHH-hcCCC---CCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEE
Q 003887 454 ----AEKLPWLLE-KLPGM---IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLI 525 (789)
Q Consensus 454 ----~~k~~~L~~-~L~~~---~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLV 525 (789)
..++..+.. +|..+ ...+++|||++++-+..+|.++|++..+.++.||.+.++.+..++...|..|+.+|||
T Consensus 276 ~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL 355 (442)
T PF06862_consen 276 ADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILL 355 (442)
T ss_pred chhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEE
Confidence 334444443 22222 2456999999999999999999999999999999999999999999999999999999
Q ss_pred eehhhh--ccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCC-----CCCeEEEEEEccccHHHHHHHHH
Q 003887 526 ATDVAA--RGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG-----DKDGTAYTLVTQKEARFAGELVN 588 (789)
Q Consensus 526 aT~v~~--~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G-----~~~G~~i~l~~~~d~~~~~~l~~ 588 (789)
.|..++ +.+.|.++++||+|.+|.++..|...+.-..... .....|.+|++.-|.-.++.|+-
T Consensus 356 ~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVG 425 (442)
T PF06862_consen 356 YTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVG 425 (442)
T ss_pred EEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhC
Confidence 999988 8999999999999999999999988886554433 12579999999999988887763
No 113
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=2.2e-22 Score=224.60 Aligned_cols=306 Identities=21% Similarity=0.287 Sum_probs=200.5
Q ss_pred HHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEE
Q 003887 252 QCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSA 331 (789)
Q Consensus 252 Q~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~ 331 (789)
.++++..|..+--+|+|++||||||.+ +|-+.+-.........++..+=|.-|.|..|.-+++....-+..++-.|.+
T Consensus 261 Eq~IMEaIn~n~vvIIcGeTGsGKTTQ--vPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsY 338 (1172)
T KOG0926|consen 261 EQRIMEAINENPVVIICGETGSGKTTQ--VPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSY 338 (1172)
T ss_pred HHHHHHHhhcCCeEEEecCCCCCcccc--chHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeE
Confidence 345677777777899999999999987 665544333222222334467788999999887765554433333434433
Q ss_pred E--EcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccch-hccCCChHHHHHHHhhc-------C
Q 003887 332 V--YGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR-MFDLGFEPQIRSIVGQI-------R 401 (789)
Q Consensus 332 ~--~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~-m~~~~f~~~i~~il~~~-------~ 401 (789)
. +.|.- .....|.++|.|.|+.-+... +.|..++.|||||||. -++ .+.+..+|.++ .
T Consensus 339 qIRfd~ti--------~e~T~IkFMTDGVLLrEi~~D-flL~kYSvIIlDEAHERSvn---TDILiGmLSRiV~LR~k~~ 406 (1172)
T KOG0926|consen 339 QIRFDGTI--------GEDTSIKFMTDGVLLREIEND-FLLTKYSVIILDEAHERSVN---TDILIGMLSRIVPLRQKYY 406 (1172)
T ss_pred EEEecccc--------CCCceeEEecchHHHHHHHHh-HhhhhceeEEechhhhccch---HHHHHHHHHHHHHHHHHHh
Confidence 3 22221 224789999999999988654 4589999999999994 222 12222222222 1
Q ss_pred ------CCceEEEEeccCcHHHHHHH--HHHhCC-CeEEeeccccCccccceEEEEecCCCcchHHHH--HHhcCCCCCC
Q 003887 402 ------PDRQTLLFSATMPRKVEKLA--REILSD-PVRVTVGEVGMANEDITQVVHVIPSDAEKLPWL--LEKLPGMIDD 470 (789)
Q Consensus 402 ------~~~q~ll~SATl~~~v~~l~--~~~l~~-p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L--~~~L~~~~~~ 470 (789)
....+|+||||+. +.++. +.++.. |-.+.+ ....-.+.-+|..-.....-...+ .-.|++.++.
T Consensus 407 ke~~~~kpLKLIIMSATLR--VsDFtenk~LFpi~pPlikV---dARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~ 481 (1172)
T KOG0926|consen 407 KEQCQIKPLKLIIMSATLR--VSDFTENKRLFPIPPPLIKV---DARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPP 481 (1172)
T ss_pred hhhcccCceeEEEEeeeEE--ecccccCceecCCCCceeee---ecccCceEEEeccCCCchHHHHHHHHHHHHhhcCCC
Confidence 2457999999984 22222 122221 222222 122222333332221111111111 1234556678
Q ss_pred CcEEEEecccccHHHHHHHHHHc---------------------------------------------------------
Q 003887 471 GDVLVFASKKTTVDEIESQLAQK--------------------------------------------------------- 493 (789)
Q Consensus 471 ~kvLVF~~s~~~a~~l~~~L~~~--------------------------------------------------------- 493 (789)
|.||||+..+.+++.|+..|++.
T Consensus 482 G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~ 561 (1172)
T KOG0926|consen 482 GGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGF 561 (1172)
T ss_pred CcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccc
Confidence 99999999999999999988763
Q ss_pred ------------------------------------------CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhh
Q 003887 494 ------------------------------------------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAA 531 (789)
Q Consensus 494 ------------------------------------------g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~ 531 (789)
.+-|..|++-++...+.+++..-..|..-++|||++++
T Consensus 562 ~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAE 641 (1172)
T KOG0926|consen 562 ASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAE 641 (1172)
T ss_pred hhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchh
Confidence 11277888888999999999988899999999999999
Q ss_pred ccCCCCCccEEEE--------EcCCCCHHHH----------HHHHhhcCCCCCCCeEEEEEEccc
Q 003887 532 RGLDIKSIKSVVN--------FDIARDMDMH----------VHRIGRTGRAGDKDGTAYTLVTQK 578 (789)
Q Consensus 532 ~GlDI~~v~~VI~--------~d~p~s~~~y----------~QriGR~gR~G~~~G~~i~l~~~~ 578 (789)
..|.||+|++||. ||--..+..| -||.||+||.| .|+||.|++..
T Consensus 642 TSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg--pGHcYRLYSSA 704 (1172)
T KOG0926|consen 642 TSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG--PGHCYRLYSSA 704 (1172)
T ss_pred cccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC--CCceeehhhhH
Confidence 9999999999996 5554444444 49999999998 79999999763
No 114
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.88 E-value=1.8e-21 Score=216.84 Aligned_cols=306 Identities=20% Similarity=0.256 Sum_probs=208.6
Q ss_pred HHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHh-hhcCcE
Q 003887 250 SIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA-KSHGIR 328 (789)
Q Consensus 250 piQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~-~~~~i~ 328 (789)
.+-.+.+..+..++-+|++++||||||++ +| +++++..-. ...++.+.-|.|..|..++.....-. ...|-.
T Consensus 54 ~~r~~il~~ve~nqvlIviGeTGsGKSTQ--ip--QyL~eaG~~---~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~ 126 (674)
T KOG0922|consen 54 KYRDQILYAVEDNQVLIVIGETGSGKSTQ--IP--QYLAEAGFA---SSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEE 126 (674)
T ss_pred HHHHHHHHHHHHCCEEEEEcCCCCCcccc--Hh--HHHHhcccc---cCCcEEeecCchHHHHHHHHHHHHHhCCCcCce
Confidence 34456677777888999999999999987 44 333332211 12237889999999887765544332 223333
Q ss_pred EEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccch-hccCCChHHHHHHHhh---cCCCc
Q 003887 329 VSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR-MFDLGFEPQIRSIVGQ---IRPDR 404 (789)
Q Consensus 329 v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~-m~~~~f~~~i~~il~~---~~~~~ 404 (789)
|.+.+--.+.. .....|.+.|.|.|++.+..+. .|+.+++|||||||. -+. .+.+..++.. -+++.
T Consensus 127 VGY~IRFed~t------s~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl~---TDiLlGlLKki~~~R~~L 196 (674)
T KOG0922|consen 127 VGYTIRFEDST------SKDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSLH---TDILLGLLKKILKKRPDL 196 (674)
T ss_pred eeeEEEecccC------CCceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhhH---HHHHHHHHHHHHhcCCCc
Confidence 33322211111 1136799999999999876555 489999999999994 332 2233333333 35678
Q ss_pred eEEEEeccCcHHHHHHHHHHhCC-CeEEeeccccCccccceEEEEecCCCcchHHHH--HHhcCCCCCCCcEEEEecccc
Q 003887 405 QTLLFSATMPRKVEKLAREILSD-PVRVTVGEVGMANEDITQVVHVIPSDAEKLPWL--LEKLPGMIDDGDVLVFASKKT 481 (789)
Q Consensus 405 q~ll~SATl~~~v~~l~~~~l~~-p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L--~~~L~~~~~~~kvLVF~~s~~ 481 (789)
++|++|||+.-+ .+..|+.+ |+....+ ...++...+..-+....-...+ +-.|....+.|.+|||.+.++
T Consensus 197 klIimSATlda~---kfS~yF~~a~i~~i~G----R~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqe 269 (674)
T KOG0922|consen 197 KLIIMSATLDAE---KFSEYFNNAPILTIPG----RTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQE 269 (674)
T ss_pred eEEEEeeeecHH---HHHHHhcCCceEeecC----CCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHH
Confidence 999999999633 45566665 4443332 2223444333322211111111 122333356789999999999
Q ss_pred cHHHHHHHHHHc----C----CceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEE--------E
Q 003887 482 TVDEIESQLAQK----G----FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN--------F 545 (789)
Q Consensus 482 ~a~~l~~~L~~~----g----~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~--------~ 545 (789)
+.+.+++.|.+. . .-+..+||.++.+++.+++..-..|..+|+|+|++++..|.|+++..||. |
T Consensus 270 EIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y 349 (674)
T KOG0922|consen 270 EIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKY 349 (674)
T ss_pred HHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEee
Confidence 999999999764 1 13578999999999999999888999999999999999999999999996 4
Q ss_pred cC----------CCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHH
Q 003887 546 DI----------ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581 (789)
Q Consensus 546 d~----------p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~ 581 (789)
++ |-|-..-.||.||+||.| +|.||.|++.++..
T Consensus 350 ~p~~g~~~L~v~~ISkasA~QRaGRAGRt~--pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 350 NPRTGLDSLIVVPISKASANQRAGRAGRTG--PGKCYRLYTESAYD 393 (674)
T ss_pred ccccCccceeEEechHHHHhhhcccCCCCC--CceEEEeeeHHHHh
Confidence 43 346677789999999998 79999999987653
No 115
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.88 E-value=4.7e-21 Score=220.89 Aligned_cols=325 Identities=18% Similarity=0.227 Sum_probs=212.0
Q ss_pred CCCcHHHHHHHHHHHc---C-------CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHH
Q 003887 246 EKPTSIQCQALPIILS---G-------RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIY 315 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~---g-------rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~ 315 (789)
..++|+|.+++..+.. | ..+|++..+|+|||++ .+++|..++++.+.....-.++|||||. .|+..|+
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq-~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWk 314 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQ-CISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWK 314 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHH-HHHHHHHHHHhCcCccccccccEEEccH-HHHHHHH
Confidence 3578999999988752 2 2478899999999998 5666777776644322233568999997 7889999
Q ss_pred HHHHHHhhhcCcEEEEEEcCCCh-HHH---HHHH---hcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCC
Q 003887 316 LETKKFAKSHGIRVSAVYGGMSK-LDQ---FKEL---KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG 388 (789)
Q Consensus 316 ~~~~k~~~~~~i~v~~~~gg~~~-~~~---~~~l---~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~ 388 (789)
+++.+|.....+....+++.... +.. +..+ .-..-|++.+++.+.+.+. .+.+..+++||+||.|++-+.
T Consensus 315 kEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~--~il~~~~glLVcDEGHrlkN~- 391 (776)
T KOG0390|consen 315 KEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR--KILLIRPGLLVCDEGHRLKNS- 391 (776)
T ss_pred HHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--HHhcCCCCeEEECCCCCccch-
Confidence 99999987667788888887664 111 1111 1125788999999876553 455778999999999998765
Q ss_pred ChHHHHHHHhhcCCCceEEEEeccC-cHHHHHHHHHHh-CC----------------CeEE-------------------
Q 003887 389 FEPQIRSIVGQIRPDRQTLLFSATM-PRKVEKLAREIL-SD----------------PVRV------------------- 431 (789)
Q Consensus 389 f~~~i~~il~~~~~~~q~ll~SATl-~~~v~~l~~~~l-~~----------------p~~i------------------- 431 (789)
...+...|..+...++ |++|.|+ .+++.++..-+. .+ |+.-
T Consensus 392 -~s~~~kaL~~l~t~rR-VLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~e 469 (776)
T KOG0390|consen 392 -DSLTLKALSSLKTPRR-VLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQE 469 (776)
T ss_pred -hhHHHHHHHhcCCCce-EEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHH
Confidence 4466677777765554 5567774 444333322110 00 0000
Q ss_pred -----------eeccc-cCccccceEEEEecC------------------------------------------------
Q 003887 432 -----------TVGEV-GMANEDITQVVHVIP------------------------------------------------ 451 (789)
Q Consensus 432 -----------~i~~~-~~~~~~i~q~~~~~~------------------------------------------------ 451 (789)
..+.. ....+.....+.++.
T Consensus 470 L~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~ 549 (776)
T KOG0390|consen 470 LRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKT 549 (776)
T ss_pred HHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccccc
Confidence 00000 000000000000000
Q ss_pred -------------------------CCcchHHHHHHhcCCCCC--CCcEEEEecccccHHHHHHHHHHcCCceeeccCCC
Q 003887 452 -------------------------SDAEKLPWLLEKLPGMID--DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDK 504 (789)
Q Consensus 452 -------------------------~~~~k~~~L~~~L~~~~~--~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~ 504 (789)
....|+..|..++..... ..++.+..|-+...+.+...++-.|+.+..|||.|
T Consensus 550 ~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~ 629 (776)
T KOG0390|consen 550 EKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKT 629 (776)
T ss_pred cccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCC
Confidence 011222223333211100 11334444555556666666677799999999999
Q ss_pred CHHHHHHHHHHhhcCC---ccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeE-EEEEEcc
Q 003887 505 DQASRMEILQKFKSGV---YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGT-AYTLVTQ 577 (789)
Q Consensus 505 ~~~eR~~~l~~F~~G~---~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~-~i~l~~~ 577 (789)
+..+|+.+++.|++.. .-+|++|.+.+.||++-+++.||+||++|||..-.|++.|+.|.|+++.+ +|.|++.
T Consensus 630 ~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlat 706 (776)
T KOG0390|consen 630 SIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLAT 706 (776)
T ss_pred chHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecC
Confidence 9999999999998743 34677889999999999999999999999999999999999999976544 4556654
No 116
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.87 E-value=3.5e-21 Score=230.08 Aligned_cols=323 Identities=19% Similarity=0.238 Sum_probs=213.1
Q ss_pred CcHHHHHHHHHHHcC---C-CEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhh
Q 003887 248 PTSIQCQALPIILSG---R-DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (789)
Q Consensus 248 ptpiQ~~ai~~il~g---r-dvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~ 323 (789)
+++.|..++..+++. . .+++.||||.|||.+.+++++..+... ....++++++.|++.++.++++.++++..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~----~~~~~r~i~vlP~~t~ie~~~~r~~~~~~ 271 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK----IKLKSRVIYVLPFRTIIEDMYRRAKEIFG 271 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc----ccccceEEEEccHHHHHHHHHHHHHhhhc
Confidence 489999999998854 4 688999999999999998887776442 12578899999999999999999998876
Q ss_pred hcCcEEEEEEcCCChHHHHHH-----H---------hcCCcEEEeCHHHHHHHHhh-cccc---ccceeEEEEcccchhc
Q 003887 324 SHGIRVSAVYGGMSKLDQFKE-----L---------KAGCEIVIATPGRLIDMLKM-KALT---MSRVTYLVLDEADRMF 385 (789)
Q Consensus 324 ~~~i~v~~~~gg~~~~~~~~~-----l---------~~~~dIiV~Tp~~L~~~l~~-~~~~---l~~i~~lVlDEah~m~ 385 (789)
...+.....++.....-.... . ..-..++++||-.+...... .... +-..+++||||+|.+.
T Consensus 272 ~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~ 351 (733)
T COG1203 272 LFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYA 351 (733)
T ss_pred ccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhc
Confidence 443333222332221111000 0 01145566666555442211 1111 1234789999999887
Q ss_pred cCCChHHHHHHHhhc-CCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccC---ccccceEEEEecCCCcchHHHHH
Q 003887 386 DLGFEPQIRSIVGQI-RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGM---ANEDITQVVHVIPSDAEKLPWLL 461 (789)
Q Consensus 386 ~~~f~~~i~~il~~~-~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~---~~~~i~q~~~~~~~~~~k~~~L~ 461 (789)
+......+..++..+ ..+..+|++|||+|+...+.+...+.....+....... ....+.+. ............+.
T Consensus 352 ~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~~~ 430 (733)
T COG1203 352 DETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRK-ERVDVEDGPQEELI 430 (733)
T ss_pred ccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccc-cchhhhhhhhHhhh
Confidence 764333333433333 34678999999999999988888877654444321100 00011111 00000000001122
Q ss_pred Hhc-CCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhh----cCCccEEEeehhhhccCCC
Q 003887 462 EKL-PGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFK----SGVYHVLIATDVAARGLDI 536 (789)
Q Consensus 462 ~~L-~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~----~G~~~VLVaT~v~~~GlDI 536 (789)
..+ .......+++|.|||+..|..++..|+..+..+.+||+.+...+|.+.++.++ .+...|+|||++++.||||
T Consensus 431 ~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi 510 (733)
T COG1203 431 ELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI 510 (733)
T ss_pred hcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc
Confidence 222 22334569999999999999999999998888999999999999998888654 4678899999999999999
Q ss_pred CCccEEEEEcCCCCHHHHHHHHhhcCCCCCC-CeEEEEEEccc
Q 003887 537 KSIKSVVNFDIARDMDMHVHRIGRTGRAGDK-DGTAYTLVTQK 578 (789)
Q Consensus 537 ~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~-~G~~i~l~~~~ 578 (789)
. .+.+| --+..++..+||+||++|.|.+ .|.++.+....
T Consensus 511 d-fd~mI--Te~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 511 D-FDVLI--TELAPIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred c-cCeee--ecCCCHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 5 45444 3355688999999999999933 56666665443
No 117
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=7.5e-21 Score=209.16 Aligned_cols=310 Identities=20% Similarity=0.291 Sum_probs=214.8
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003887 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~ 325 (789)
....++-.+.+.++..++-+||.++||||||.+ +|-..+ ...- . ..+.++-+..|.|..|..++..+.+- .
T Consensus 264 LPVy~ykdell~av~e~QVLiI~GeTGSGKTTQ--iPQyL~--EaGy-t-k~gk~IgcTQPRRVAAmSVAaRVA~E---M 334 (902)
T KOG0923|consen 264 LPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQ--IPQYLY--EAGY-T-KGGKKIGCTQPRRVAAMSVAARVAEE---M 334 (902)
T ss_pred CCchhhHHHHHHHHHhCcEEEEEcCCCCCcccc--ccHHHH--hccc-c-cCCceEeecCcchHHHHHHHHHHHHH---h
Confidence 344677788888888999999999999999987 564433 2211 1 23455778899999998886554433 2
Q ss_pred CcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccc-hhccCCChHHHHHHHhhcCCCc
Q 003887 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD-RMFDLGFEPQIRSIVGQIRPDR 404 (789)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah-~m~~~~f~~~i~~il~~~~~~~ 404 (789)
+++...-+|-.-..+.+. ....-|-++|.|+|+.-+... ..|.++++||||||| |-+..+..-.+-+-+..++++.
T Consensus 335 gvkLG~eVGYsIRFEdcT--SekTvlKYMTDGmLlREfL~e-pdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdL 411 (902)
T KOG0923|consen 335 GVKLGHEVGYSIRFEDCT--SEKTVLKYMTDGMLLREFLSE-PDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDL 411 (902)
T ss_pred CcccccccceEEEecccc--CcceeeeeecchhHHHHHhcc-ccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcc
Confidence 443332233222222211 123568899999999877544 468999999999999 4444443334445556778999
Q ss_pred eEEEEeccCcHHHHHHHHHHhCC-CeEEeeccccCccccceEEEEecCCCcchHHHHHHhcC---CCCCCCcEEEEeccc
Q 003887 405 QTLLFSATMPRKVEKLAREILSD-PVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLP---GMIDDGDVLVFASKK 480 (789)
Q Consensus 405 q~ll~SATl~~~v~~l~~~~l~~-p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~---~~~~~~kvLVF~~s~ 480 (789)
.+|+.|||+... . +..|+.+ |++...+. ...+...+...+. .+-+...+..+. ...+.|.||||...+
T Consensus 412 KllIsSAT~DAe--k-FS~fFDdapIF~iPGR----RyPVdi~Yt~~PE-AdYldAai~tVlqIH~tqp~GDILVFltGQ 483 (902)
T KOG0923|consen 412 KLLISSATMDAE--K-FSAFFDDAPIFRIPGR----RYPVDIFYTKAPE-ADYLDAAIVTVLQIHLTQPLGDILVFLTGQ 483 (902)
T ss_pred eEEeeccccCHH--H-HHHhccCCcEEeccCc----ccceeeecccCCc-hhHHHHHHhhheeeEeccCCccEEEEeccH
Confidence 999999999633 3 4555555 44443332 2233333333332 223333222222 223457899999999
Q ss_pred ccHHHHHHHHHHc---------CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEE-------
Q 003887 481 TTVDEIESQLAQK---------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN------- 544 (789)
Q Consensus 481 ~~a~~l~~~L~~~---------g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~------- 544 (789)
+..+.....|.+. .+-++.||..++...+..+++--..|..+|++||++++..|.|++|..||.
T Consensus 484 eEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~n 563 (902)
T KOG0923|consen 484 EEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQN 563 (902)
T ss_pred HHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCcccccc
Confidence 9988887777653 356889999999999999999889999999999999999999999999996
Q ss_pred -EcC----------CCCHHHHHHHHhhcCCCCCCCeEEEEEEcc
Q 003887 545 -FDI----------ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (789)
Q Consensus 545 -~d~----------p~s~~~y~QriGR~gR~G~~~G~~i~l~~~ 577 (789)
|++ |-+-..-.||.||+||.| +|.||.|++.
T Consensus 564 synprtGmesL~v~piSKAsA~QRaGRAGRtg--PGKCfRLYt~ 605 (902)
T KOG0923|consen 564 SYNPRTGMESLLVTPISKASANQRAGRAGRTG--PGKCFRLYTA 605 (902)
T ss_pred CcCCCcCceeEEEeeechhhhhhhccccCCCC--CCceEEeech
Confidence 332 334556689999999998 7999999984
No 118
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=9.8e-21 Score=208.35 Aligned_cols=312 Identities=20% Similarity=0.266 Sum_probs=207.2
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhh
Q 003887 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (789)
Q Consensus 245 ~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~ 324 (789)
|......+.+.+..|..++-+|++++||||||.+ +| ++|+.... .+...+-+..|.|..|..++..+..-.
T Consensus 354 ~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQ--l~--QyL~edGY---~~~GmIGcTQPRRvAAiSVAkrVa~EM-- 424 (1042)
T KOG0924|consen 354 YLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQ--LA--QYLYEDGY---ADNGMIGCTQPRRVAAISVAKRVAEEM-- 424 (1042)
T ss_pred hcchHHHHHHHHHHHhhCcEEEEEecCCCCchhh--hH--HHHHhccc---ccCCeeeecCchHHHHHHHHHHHHHHh--
Confidence 3444567777777787888899999999999988 33 34433221 123456678899999988865555433
Q ss_pred cCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccc-hhccCCChHHHHHHHhhcCCC
Q 003887 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD-RMFDLGFEPQIRSIVGQIRPD 403 (789)
Q Consensus 325 ~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah-~m~~~~f~~~i~~il~~~~~~ 403 (789)
+.....-+|..-..+... ....-|-++|.+.|+....... .|.++++||+|||| +-++.+..-.+.+.+-.-+.+
T Consensus 425 -~~~lG~~VGYsIRFEdvT--~~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERslNtDilfGllk~~larRrd 500 (1042)
T KOG0924|consen 425 -GVTLGDTVGYSIRFEDVT--SEDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRD 500 (1042)
T ss_pred -CCccccccceEEEeeecC--CCceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhcccchHHHHHHHHHHHHhhcc
Confidence 333333333222221111 1236789999999987654433 58899999999999 445544333333333334568
Q ss_pred ceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHHHH-hc--CCCCCCCcEEEEeccc
Q 003887 404 RQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE-KL--PGMIDDGDVLVFASKK 480 (789)
Q Consensus 404 ~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~-~L--~~~~~~~kvLVF~~s~ 480 (789)
.++|++|||+. .+.+...|.+-|.....+.. ..+...+...+.. +-..+.+. .+ ......|.+|||.+.+
T Consensus 501 lKliVtSATm~--a~kf~nfFgn~p~f~IpGRT----yPV~~~~~k~p~e-DYVeaavkq~v~Ihl~~~~GdilIfmtGq 573 (1042)
T KOG0924|consen 501 LKLIVTSATMD--AQKFSNFFGNCPQFTIPGRT----YPVEIMYTKTPVE-DYVEAAVKQAVQIHLSGPPGDILIFMTGQ 573 (1042)
T ss_pred ceEEEeecccc--HHHHHHHhCCCceeeecCCc----cceEEEeccCchH-HHHHHHHhhheEeeccCCCCCEEEecCCC
Confidence 89999999994 45555555445554433322 2233332222211 12222221 11 2222457899999998
Q ss_pred ccHHHHHHHHHHc----------CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEcC---
Q 003887 481 TTVDEIESQLAQK----------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDI--- 547 (789)
Q Consensus 481 ~~a~~l~~~L~~~----------g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~--- 547 (789)
+..+..+..+... ++.+..|++.|++.-+.++++.-..|..+++|||++++..|.|+++.+||..+.
T Consensus 574 ediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~ 653 (1042)
T KOG0924|consen 574 EDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKL 653 (1042)
T ss_pred cchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceee
Confidence 8876665555432 678999999999999999999888999999999999999999999999996332
Q ss_pred ---------------CCCHHHHHHHHhhcCCCCCCCeEEEEEEccc
Q 003887 548 ---------------ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK 578 (789)
Q Consensus 548 ---------------p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~ 578 (789)
|-+-..-.||.||+||.| +|+||.+++..
T Consensus 654 kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~--pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 654 KVYNPRIGMDALQIVPISQANADQRAGRAGRTG--PGTCYRLYTED 697 (1042)
T ss_pred eecccccccceeEEEechhccchhhccccCCCC--Ccceeeehhhh
Confidence 345556679999999998 79999999873
No 119
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.85 E-value=6.7e-20 Score=214.71 Aligned_cols=133 Identities=22% Similarity=0.382 Sum_probs=117.7
Q ss_pred cchHHHHHHhcCCCCC-CCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhc
Q 003887 454 AEKLPWLLEKLPGMID-DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAAR 532 (789)
Q Consensus 454 ~~k~~~L~~~L~~~~~-~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~ 532 (789)
..++..|++.|..... +.++||||+++..++.|+++|...++.+..+|+++++.+|..++..|+.|.+.|||||+++++
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~r 504 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLRE 504 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcC
Confidence 4566677777765443 458999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccEEEEEc-----CCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHH
Q 003887 533 GLDIKSIKSVVNFD-----IARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVN 588 (789)
Q Consensus 533 GlDI~~v~~VI~~d-----~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~ 588 (789)
|+|+|++++||++| .|.+...|+||+||+||.. .|.|++|++..+..+...+.+
T Consensus 505 GfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~--~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 505 GLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV--NGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred CeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC--CCEEEEEEcCCCHHHHHHHHH
Confidence 99999999999998 7999999999999999974 699999999877655554443
No 120
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.85 E-value=5.6e-20 Score=215.37 Aligned_cols=314 Identities=21% Similarity=0.271 Sum_probs=228.6
Q ss_pred CcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHh-hhcC
Q 003887 248 PTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA-KSHG 326 (789)
Q Consensus 248 ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~-~~~~ 326 (789)
-+..+.+.+..+.+.+-+++.++||+|||++----+|.+..... ....+++.-|.|--|.-+++.+.+-- ...+
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-----~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g 248 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG-----AACNIICTQPRRISAISVAERVAKERGESLG 248 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC-----CCCeEEecCCchHHHHHHHHHHHHHhccccC
Confidence 45778888999999999999999999999985444555544332 34558888999988888877766432 2334
Q ss_pred cEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccc-hhccCCChHHHHHHHhhcCCCce
Q 003887 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD-RMFDLGFEPQIRSIVGQIRPDRQ 405 (789)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah-~m~~~~f~~~i~~il~~~~~~~q 405 (789)
-.|.+-....+.. .....+++||.|.|++.+.. ...+..+++||+||+| |=.+.+|.-.+.+.+-..+++.+
T Consensus 249 ~~VGYqvrl~~~~------s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~Lk 321 (924)
T KOG0920|consen 249 EEVGYQVRLESKR------SRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLK 321 (924)
T ss_pred CeeeEEEeeeccc------CCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCce
Confidence 3444433332221 12377999999999999977 4568899999999999 55667787777777777789999
Q ss_pred EEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcc-----ccc-----------eEE------------EEe--cCCCcc
Q 003887 406 TLLFSATMPRKVEKLAREILSDPVRVTVGEVGMAN-----EDI-----------TQV------------VHV--IPSDAE 455 (789)
Q Consensus 406 ~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~-----~~i-----------~q~------------~~~--~~~~~~ 455 (789)
+|+||||+. .++...|++....+.+....... ++| .+. ... ...+..
T Consensus 322 vILMSAT~d---ae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~ 398 (924)
T KOG0920|consen 322 VILMSATLD---AELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYD 398 (924)
T ss_pred EEEeeeecc---hHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHH
Confidence 999999996 33566666655444443221110 000 000 000 001122
Q ss_pred hHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHc-------CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeeh
Q 003887 456 KLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK-------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD 528 (789)
Q Consensus 456 k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~-------g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~ 528 (789)
-+..|+..+......|.+|||.+...++..+.+.|... .+-+..+|+.|+..++..+....-.|..+|+++|.
T Consensus 399 Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTN 478 (924)
T KOG0920|consen 399 LIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATN 478 (924)
T ss_pred HHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhh
Confidence 23445566666656789999999999999999999642 36788999999999999999999999999999999
Q ss_pred hhhccCCCCCccEEEE--------EcCCCCH----------HHHHHHHhhcCCCCCCCeEEEEEEccc
Q 003887 529 VAARGLDIKSIKSVVN--------FDIARDM----------DMHVHRIGRTGRAGDKDGTAYTLVTQK 578 (789)
Q Consensus 529 v~~~GlDI~~v~~VI~--------~d~p~s~----------~~y~QriGR~gR~G~~~G~~i~l~~~~ 578 (789)
+++..|.|++|-+||. ||+-.+. ..-.||.||+||. ..|.||.+++..
T Consensus 479 IAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv--~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 479 IAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV--RPGICYHLYTRS 544 (924)
T ss_pred hHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc--cCCeeEEeechh
Confidence 9999999999999996 6654433 3446999999998 489999999874
No 121
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.85 E-value=4.6e-19 Score=216.10 Aligned_cols=345 Identities=19% Similarity=0.232 Sum_probs=213.8
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHH----HHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCc
Q 003887 232 FSTQLMHAISKQGYEKPTSIQCQALP----IILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (789)
Q Consensus 232 l~~~l~~~l~~~g~~~ptpiQ~~ai~----~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PT 307 (789)
+++.+...+...||. ++|.|.+.+. .+..++++++.|+||+|||++|++|++.++. .+.++||.+||
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~--------~~~~vvi~t~t 301 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI--------TEKPVVISTNT 301 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc--------CCCeEEEEeCc
Confidence 344566777777886 8999998776 4557899999999999999999999988764 24469999999
Q ss_pred HHHHHHHHH-HHHHHhhhcC--cEEEEEEcCCChH-----H----------H----------------------------
Q 003887 308 RELAHQIYL-ETKKFAKSHG--IRVSAVYGGMSKL-----D----------Q---------------------------- 341 (789)
Q Consensus 308 reLa~Qi~~-~~~k~~~~~~--i~v~~~~gg~~~~-----~----------~---------------------------- 341 (789)
++|..|+.. ++..+.+.++ ++++++.|+...- . .
T Consensus 302 ~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~ 381 (850)
T TIGR01407 302 KVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGG 381 (850)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCc
Confidence 999999965 5666655444 7777777655310 0 0
Q ss_pred ----HHH------------------------HhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccC------
Q 003887 342 ----FKE------------------------LKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL------ 387 (789)
Q Consensus 342 ----~~~------------------------l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~------ 387 (789)
+.. ....++||||.+.-|+..+......+....+|||||||++.+.
T Consensus 382 ~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~ 461 (850)
T TIGR01407 382 NKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQ 461 (850)
T ss_pred chhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhc
Confidence 000 0123899999999888776444333566789999999987430
Q ss_pred -CC-----hH----------------------------------------------------------------HHHHHH
Q 003887 388 -GF-----EP----------------------------------------------------------------QIRSIV 397 (789)
Q Consensus 388 -~f-----~~----------------------------------------------------------------~i~~il 397 (789)
.+ .. .+...+
T Consensus 462 ~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~ 541 (850)
T TIGR01407 462 EELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFD 541 (850)
T ss_pred ceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 00 00 000000
Q ss_pred hh---------------------c---------------------------CCCceEEEEeccCcHH-HHHHHHHHhCCC
Q 003887 398 GQ---------------------I---------------------------RPDRQTLLFSATMPRK-VEKLAREILSDP 428 (789)
Q Consensus 398 ~~---------------------~---------------------------~~~~q~ll~SATl~~~-v~~l~~~~l~~p 428 (789)
.. . +....+|++|||+... -.......++-+
T Consensus 542 ~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~ 621 (850)
T TIGR01407 542 LALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLT 621 (850)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCC
Confidence 00 0 0114678999998631 122333333322
Q ss_pred --eEEeeccccCccccceEEEEecCCC---------cchHHHHHHhcCCC--CCCCcEEEEecccccHHHHHHHHHH---
Q 003887 429 --VRVTVGEVGMANEDITQVVHVIPSD---------AEKLPWLLEKLPGM--IDDGDVLVFASKKTTVDEIESQLAQ--- 492 (789)
Q Consensus 429 --~~i~i~~~~~~~~~i~q~~~~~~~~---------~~k~~~L~~~L~~~--~~~~kvLVF~~s~~~a~~l~~~L~~--- 492 (789)
....+. +..-.-..+...+++.+ ..-...+...|.+. ...+++|||++++..++.++..|..
T Consensus 622 ~~~~~~~~--~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~ 699 (850)
T TIGR01407 622 DVHFNTIE--PTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPE 699 (850)
T ss_pred ccccceec--CCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhcc
Confidence 111111 11111011222222111 11112233333221 1357999999999999999999975
Q ss_pred -cCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCcc--EEEEEcCCCC-------------------
Q 003887 493 -KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIK--SVVNFDIARD------------------- 550 (789)
Q Consensus 493 -~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~--~VI~~d~p~s------------------- 550 (789)
.++.+ +..+.. ..|..+++.|++++..||++|+.+.+|+|+++.. .||+..+|..
T Consensus 700 ~~~~~~--l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~ 776 (850)
T TIGR01407 700 FEGYEV--LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGK 776 (850)
T ss_pred ccCceE--EecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcC
Confidence 23333 333333 4789999999999999999999999999999855 5677665531
Q ss_pred -----------HHHHHHHHhhcCCCCCCCeEEEEEEccc--cHHHHHHHHHHHH
Q 003887 551 -----------MDMHVHRIGRTGRAGDKDGTAYTLVTQK--EARFAGELVNSLI 591 (789)
Q Consensus 551 -----------~~~y~QriGR~gR~G~~~G~~i~l~~~~--d~~~~~~l~~~L~ 591 (789)
...+.|.+||.-|..+..|.++ ++... ...+-+.+++.|.
T Consensus 777 ~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~-ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 777 NPFYDYVLPMAIIRLRQALGRLIRRENDRGSIV-ILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred CchHHhhHHHHHHHHHHhhccccccCCceEEEE-EEccccccchHHHHHHHhCC
Confidence 1223599999999885556544 44433 3445566666663
No 122
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.84 E-value=4.8e-20 Score=203.26 Aligned_cols=147 Identities=24% Similarity=0.402 Sum_probs=120.1
Q ss_pred CcchHHHHHHhcCCCCCC-CcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCC-ccEEEeehhh
Q 003887 453 DAEKLPWLLEKLPGMIDD-GDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGV-YHVLIATDVA 530 (789)
Q Consensus 453 ~~~k~~~L~~~L~~~~~~-~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~-~~VLVaT~v~ 530 (789)
+..|+..|.++|.++... .++|+|.+...+.+.+.++|...++....|.|.....+|..++.+|+... +-+|++|.+.
T Consensus 1026 dSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAG 1105 (1185)
T KOG0388|consen 1026 DSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAG 1105 (1185)
T ss_pred cccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccC
Confidence 456777777777665544 49999999999999999999999999999999999999999999998854 4568899999
Q ss_pred hccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCC-CeEEEEEEccccHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 003887 531 ARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDK-DGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAM 606 (789)
Q Consensus 531 ~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~-~G~~i~l~~~~d~~~~~~l~~~L~~~~~~vp~~l~~~a~ 606 (789)
+-|||+..+++||+||..|||..-.|.+.|++|.|+. .-++|.|++..-.+ .+.|..++|. .++..+.+
T Consensus 1106 GLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvE-----Ek~l~rA~qK--~~vQq~Vm 1175 (1185)
T KOG0388|consen 1106 GLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVE-----EKVLERANQK--DEVQQMVM 1175 (1185)
T ss_pred cccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHH-----HHHHHHhhhH--HHHHHHHH
Confidence 9999999999999999999999999999999999943 45778888765433 2344455543 33445555
No 123
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=7.4e-20 Score=214.17 Aligned_cols=140 Identities=21% Similarity=0.265 Sum_probs=118.2
Q ss_pred CCcchHHHHHHhcCCCC-CCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhh
Q 003887 452 SDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530 (789)
Q Consensus 452 ~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~ 530 (789)
....|+..|++.+.... ...++||||+++..++.|+..|...++++.+||+ .+.+|+..+..|+.+...|+|||+++
T Consensus 579 t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMA 656 (1025)
T PRK12900 579 TRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMA 656 (1025)
T ss_pred CHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCc
Confidence 34567888888775432 3569999999999999999999999999999996 68899999999999999999999999
Q ss_pred hccCCCC---Ccc-----EEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHH----HHHHHHHHHcC
Q 003887 531 ARGLDIK---SIK-----SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFA----GELVNSLIAAG 594 (789)
Q Consensus 531 ~~GlDI~---~v~-----~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~----~~l~~~L~~~~ 594 (789)
+||+||+ +|. +||+++.|.+...|.|++||+||.| .+|.+++|++.+|.-+- ..+...+...+
T Consensus 657 GRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqG-dpGsS~ffvSleD~Lmr~f~~~~i~~~~~~~~ 731 (1025)
T PRK12900 657 GRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQG-DPGESVFYVSLEDELMRLFGSDRVISVMDRLG 731 (1025)
T ss_pred CCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCC-CCcceEEEechhHHHHHhhCcHHHHHHHHHcC
Confidence 9999999 554 4589999999999999999999999 68999999998875431 13555555544
No 124
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.83 E-value=1.4e-20 Score=215.71 Aligned_cols=315 Identities=20% Similarity=0.297 Sum_probs=213.7
Q ss_pred CCCcHHHHHHHHHHHc----CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003887 246 EKPTSIQCQALPIILS----GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~----grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~ 321 (789)
-++.+||..++.|+.+ .-+.|++.+||.|||++ .+.++.+++.... ..||+ |||||+..|. .|..++.+|
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K~---~~GP~-LvivPlstL~-NW~~Ef~kW 466 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHKQ---MQGPF-LIIVPLSTLV-NWSSEFPKW 466 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHcc---cCCCe-EEeccccccC-Cchhhcccc
Confidence 3688999999999863 35789999999999998 6777888887643 45776 8899999998 599999999
Q ss_pred hhhcCcEEEEEEcCCChHHHHH--HHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhh
Q 003887 322 AKSHGIRVSAVYGGMSKLDQFK--ELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQ 399 (789)
Q Consensus 322 ~~~~~i~v~~~~gg~~~~~~~~--~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~ 399 (789)
++ .+..+.+.|.......+. .....++|+++|++.++. .+..+.-.+|.|+||||.|+|.+. ...+...+..
T Consensus 467 aP--Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa--~~KLt~~L~t 540 (1157)
T KOG0386|consen 467 AP--SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNA--ICKLTDTLNT 540 (1157)
T ss_pred cc--ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccch--hhHHHHHhhc
Confidence 86 455555555332221111 112458999999988876 333444557889999999998653 2222222221
Q ss_pred cCCCceEEEEeccC-cHHHHHH----------------------------------------------------------
Q 003887 400 IRPDRQTLLFSATM-PRKVEKL---------------------------------------------------------- 420 (789)
Q Consensus 400 ~~~~~q~ll~SATl-~~~v~~l---------------------------------------------------------- 420 (789)
.-.....+++|.|+ .+.+.+|
T Consensus 541 ~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRR 620 (1157)
T KOG0386|consen 541 HYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRR 620 (1157)
T ss_pred cccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHh
Confidence 11111223333332 1111100
Q ss_pred ----------------------------------------------------------HHHHhCCCeEEeeccccCcccc
Q 003887 421 ----------------------------------------------------------AREILSDPVRVTVGEVGMANED 442 (789)
Q Consensus 421 ----------------------------------------------------------~~~~l~~p~~i~i~~~~~~~~~ 442 (789)
++++|.+|..+.-- ...
T Consensus 621 lKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~v-----e~~ 695 (1157)
T KOG0386|consen 621 LKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANV-----ENS 695 (1157)
T ss_pred hhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhh-----ccc
Confidence 12222222211000 000
Q ss_pred ceEEEEe--cCCCcchHHHHHHhcCCCCC-CCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcC
Q 003887 443 ITQVVHV--IPSDAEKLPWLLEKLPGMID-DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSG 519 (789)
Q Consensus 443 i~q~~~~--~~~~~~k~~~L~~~L~~~~~-~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G 519 (789)
+...+.. +-....|+..|..+|.++.. +++||.||......+.+..+|.-.++....+.|.....+|...+..|..-
T Consensus 696 ~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~P 775 (1157)
T KOG0386|consen 696 YTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAP 775 (1157)
T ss_pred cccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCC
Confidence 0000000 00124566666666655443 56999999999999999999999999999999999999999999999875
Q ss_pred C---ccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCC-eEEEEEEcc
Q 003887 520 V---YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKD-GTAYTLVTQ 577 (789)
Q Consensus 520 ~---~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~-G~~i~l~~~ 577 (789)
. +.+|++|.+.+.|||+..+++||+||..|++..+.|+..|++|+|++. ..++.+++.
T Consensus 776 ds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv 837 (1157)
T KOG0386|consen 776 DSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITV 837 (1157)
T ss_pred CCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehh
Confidence 4 457899999999999999999999999999999999999999999543 444555543
No 125
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.83 E-value=1.9e-18 Score=199.26 Aligned_cols=288 Identities=26% Similarity=0.380 Sum_probs=202.2
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHH
Q 003887 237 MHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYL 316 (789)
Q Consensus 237 ~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~ 316 (789)
.+.+++.-...|+..|+--..-++.|+..-++||||.|||.- .+.+-.++. ..|.+++||+||+.|+.|+++
T Consensus 72 ~~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTf-g~~~sl~~a-------~kgkr~yii~PT~~Lv~Q~~~ 143 (1187)
T COG1110 72 EEFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTF-GLLMSLYLA-------KKGKRVYIIVPTTTLVRQVYE 143 (1187)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHH-HHHHHHHHH-------hcCCeEEEEecCHHHHHHHHH
Confidence 344555433489999999999999999999999999999974 444333332 236789999999999999999
Q ss_pred HHHHHhhhcC-cEEEEEEcCC-ChH---HHHHHHhc-CCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccC---
Q 003887 317 ETKKFAKSHG-IRVSAVYGGM-SKL---DQFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL--- 387 (789)
Q Consensus 317 ~~~k~~~~~~-i~v~~~~gg~-~~~---~~~~~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~--- 387 (789)
.+.+++...+ ..+.++|++. +.. +....+.+ +.||+|+|..-|..-+.. +.--++++|++|.+|.++..
T Consensus 144 kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~LkaskN 221 (1187)
T COG1110 144 RLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILKASKN 221 (1187)
T ss_pred HHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHhcccc
Confidence 9999987655 5555545554 332 23344444 599999998776654431 11136899999999977542
Q ss_pred --------CChHH-------HHHHHhhc------------------------CCCceEEEEeccCcHH--HHHHHHHHhC
Q 003887 388 --------GFEPQ-------IRSIVGQI------------------------RPDRQTLLFSATMPRK--VEKLAREILS 426 (789)
Q Consensus 388 --------~f~~~-------i~~il~~~------------------------~~~~q~ll~SATl~~~--v~~l~~~~l~ 426 (789)
||... +..+...+ .+..++++.|||..+. -..+.+.+++
T Consensus 222 vDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg 301 (1187)
T COG1110 222 VDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG 301 (1187)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC
Confidence 33321 11111111 1335899999996443 2345666655
Q ss_pred CCeEEeeccccCccccceEEEEecCCCcchHHHHHHhcCCCCCCCcEEEEecc---cccHHHHHHHHHHcCCceeeccCC
Q 003887 427 DPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASK---KTTVDEIESQLAQKGFKAAALHGD 503 (789)
Q Consensus 427 ~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s---~~~a~~l~~~L~~~g~~v~~lhg~ 503 (789)
+.++.......+|...+... .-...++++++++ +...|||++. ++.++.|+++|+.+|+++..+|..
T Consensus 302 ----FevG~~~~~LRNIvD~y~~~----~~~e~~~elvk~l--G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~ 371 (1187)
T COG1110 302 ----FEVGSGGEGLRNIVDIYVES----ESLEKVVELVKKL--GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE 371 (1187)
T ss_pred ----CccCccchhhhheeeeeccC----ccHHHHHHHHHHh--CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc
Confidence 33444444445555544433 3344445555543 2378999999 999999999999999999999973
Q ss_pred CCHHHHHHHHHHhhcCCccEEEee----hhhhccCCCCC-ccEEEEEcCCC
Q 003887 504 KDQASRMEILQKFKSGVYHVLIAT----DVAARGLDIKS-IKSVVNFDIAR 549 (789)
Q Consensus 504 ~~~~eR~~~l~~F~~G~~~VLVaT----~v~~~GlDI~~-v~~VI~~d~p~ 549 (789)
..+.++.|..|+++|||.. .++-||||+|. ++.+|+|+.|.
T Consensus 372 -----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 372 -----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred -----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 3678999999999999976 56779999997 88999999994
No 126
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.82 E-value=7.6e-19 Score=175.94 Aligned_cols=187 Identities=41% Similarity=0.627 Sum_probs=157.3
Q ss_pred cCCCCCcHHHHHHHHHHHcC-CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003887 243 QGYEKPTSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 243 ~g~~~ptpiQ~~ai~~il~g-rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~ 321 (789)
.++..|+++|.+++..++.. +.++++++||+|||.+++.+++.++.... ..++||++|++.++.||...+..+
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~------~~~~l~~~p~~~~~~~~~~~~~~~ 77 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK------GKRVLVLVPTRELAEQWAEELKKL 77 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC------CCcEEEEeCCHHHHHHHHHHHHHH
Confidence 45678999999999999998 99999999999999998888888775432 356999999999999999999988
Q ss_pred hhhcCcEEEEEEcCCChHHHHHHHhcCC-cEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhc
Q 003887 322 AKSHGIRVSAVYGGMSKLDQFKELKAGC-EIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI 400 (789)
Q Consensus 322 ~~~~~i~v~~~~gg~~~~~~~~~l~~~~-dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~ 400 (789)
+..........+++......+..+..+. +|+++|++.|.+.+.........+.+|||||||.+....+...+..++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~ 157 (201)
T smart00487 78 GPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL 157 (201)
T ss_pred hccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC
Confidence 7654445566666666566666666666 999999999999998766677889999999999998767888888888888
Q ss_pred CCCceEEEEeccCcHHHHHHHHHHhCCCeEEeecc
Q 003887 401 RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGE 435 (789)
Q Consensus 401 ~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~ 435 (789)
++..+++++|||+++.....+..++.+.+.+....
T Consensus 158 ~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 158 PKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred CccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 88899999999999999999999888777666543
No 127
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.82 E-value=1.4e-18 Score=186.02 Aligned_cols=316 Identities=16% Similarity=0.199 Sum_probs=215.8
Q ss_pred CCCCcHHHHHHHHHHH-cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhh
Q 003887 245 YEKPTSIQCQALPIIL-SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (789)
Q Consensus 245 ~~~ptpiQ~~ai~~il-~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~ 323 (789)
+..+.|+|.+++...+ .|-.+|+..+||.|||++++..+-.+..+ .| .|||||. .|-..|.+++.+|++
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraE--------wp-lliVcPA-svrftWa~al~r~lp 265 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAE--------WP-LLIVCPA-SVRFTWAKALNRFLP 265 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhc--------Cc-EEEEecH-HHhHHHHHHHHHhcc
Confidence 3457799999998766 56789999999999999976555444433 33 5899998 566689999999987
Q ss_pred hcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcCCC
Q 003887 324 SHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD 403 (789)
Q Consensus 324 ~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~ 403 (789)
.... +.++.++...... +.....|.|.+++.|..+-. .+.-..+.+||+||+|.+.+.. ...+..++..+..-
T Consensus 266 s~~p-i~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~a 338 (689)
T KOG1000|consen 266 SIHP-IFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVA 338 (689)
T ss_pred cccc-eEEEecccCCccc---cccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhccc-hhhhhhhhhHHHHh
Confidence 5433 5555555443321 22336799999998876432 3334458999999999887643 23345555555556
Q ss_pred ceEEEEeccCc----H---------------HHHHHHHHHhCC-CeEEeecccc--------------------------
Q 003887 404 RQTLLFSATMP----R---------------KVEKLAREILSD-PVRVTVGEVG-------------------------- 437 (789)
Q Consensus 404 ~q~ll~SATl~----~---------------~v~~l~~~~l~~-p~~i~i~~~~-------------------------- 437 (789)
.++|++|.|+. - +.-+++..||.- .+.+.....+
T Consensus 339 khvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~ 418 (689)
T KOG1000|consen 339 KHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLK 418 (689)
T ss_pred hheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68899999962 1 222334444432 1111110000
Q ss_pred CccccceEEEEecCC-------------------------------------CcchHHHHHHhcCC-----CCCCCcEEE
Q 003887 438 MANEDITQVVHVIPS-------------------------------------DAEKLPWLLEKLPG-----MIDDGDVLV 475 (789)
Q Consensus 438 ~~~~~i~q~~~~~~~-------------------------------------~~~k~~~L~~~L~~-----~~~~~kvLV 475 (789)
...+. .+.+.++.. ...|...+.+.|.. .....+.||
T Consensus 419 qLPpK-rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflV 497 (689)
T KOG1000|consen 419 QLPPK-RREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLV 497 (689)
T ss_pred hCCcc-ceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEE
Confidence 01111 222222211 01122222232222 112348999
Q ss_pred EecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcC-CccE-EEeehhhhccCCCCCccEEEEEcCCCCHHH
Q 003887 476 FASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSG-VYHV-LIATDVAARGLDIKSIKSVVNFDIARDMDM 553 (789)
Q Consensus 476 F~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G-~~~V-LVaT~v~~~GlDI~~v~~VI~~d~p~s~~~ 553 (789)
||.-....+.|...+.++++....|.|..+..+|....+.|+.. ++.| +++-.+++.||++...+.||+..++|||..
T Consensus 498 FaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgv 577 (689)
T KOG1000|consen 498 FAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGV 577 (689)
T ss_pred EehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCce
Confidence 99999999999999999999999999999999999999999864 4554 556688899999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCeEEEEEEccc
Q 003887 554 HVHRIGRTGRAGDKDGTAYTLVTQK 578 (789)
Q Consensus 554 y~QriGR~gR~G~~~G~~i~l~~~~ 578 (789)
.+|.-.|++|.|++..+.+.++..+
T Consensus 578 LlQAEDRaHRiGQkssV~v~ylvAK 602 (689)
T KOG1000|consen 578 LLQAEDRAHRIGQKSSVFVQYLVAK 602 (689)
T ss_pred EEechhhhhhccccceeeEEEEEec
Confidence 9999999999998877666555443
No 128
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.82 E-value=4.6e-18 Score=197.66 Aligned_cols=318 Identities=21% Similarity=0.307 Sum_probs=215.3
Q ss_pred CCCcHHHHHHHHHHHcC----CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003887 246 EKPTSIQCQALPIILSG----RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~g----rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~ 321 (789)
..+++-|..++..|... ...++.+-||||||-+|+=.+- ..+. .|..+|||+|-..|..|+.+.++..
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~-~~L~-------~GkqvLvLVPEI~Ltpq~~~rf~~r 268 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIA-KVLA-------QGKQVLVLVPEIALTPQLLARFKAR 268 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHH-HHHH-------cCCEEEEEeccccchHHHHHHHHHH
Confidence 46789999999999765 6789999999999999765554 4443 3778999999999999998888877
Q ss_pred hhhcCcEEEEEEcCCChHHHHHHH---h-cCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchh--ccC-C--ChHH
Q 003887 322 AKSHGIRVSAVYGGMSKLDQFKEL---K-AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM--FDL-G--FEPQ 392 (789)
Q Consensus 322 ~~~~~i~v~~~~gg~~~~~~~~~l---~-~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m--~~~-~--f~~~ 392 (789)
+ +.++.+++++.+..+....+ . ....|||+|-..| ...+.++.+|||||=|.- ... + +...
T Consensus 269 F---g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhAR 338 (730)
T COG1198 269 F---GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHAR 338 (730)
T ss_pred h---CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCCCcCHH
Confidence 5 68889999998877655444 3 3489999995443 236889999999999942 221 1 2222
Q ss_pred HHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccC-ccccceEEEEecCCCcch----HHHHHHhcCCC
Q 003887 393 IRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGM-ANEDITQVVHVIPSDAEK----LPWLLEKLPGM 467 (789)
Q Consensus 393 i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~-~~~~i~q~~~~~~~~~~k----~~~L~~~L~~~ 467 (789)
-..++..-..++++|+-|||+. ++.+.+..-+....+....... +...-.+.+..-...... ...|++.+.+.
T Consensus 339 dvA~~Ra~~~~~pvvLgSATPS--LES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~ 416 (730)
T COG1198 339 DVAVLRAKKENAPVVLGSATPS--LESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKT 416 (730)
T ss_pred HHHHHHHHHhCCCEEEecCCCC--HHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHH
Confidence 2233444445788999999975 4444444323223333222211 111111122111111111 14556665544
Q ss_pred CC-CCcEEEEecccccH------------------------------------------------------------HHH
Q 003887 468 ID-DGDVLVFASKKTTV------------------------------------------------------------DEI 486 (789)
Q Consensus 468 ~~-~~kvLVF~~s~~~a------------------------------------------------------------~~l 486 (789)
+. +.++|||+|++-.+ +++
T Consensus 417 l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gteri 496 (730)
T COG1198 417 LERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERI 496 (730)
T ss_pred HhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHH
Confidence 43 45888888876543 555
Q ss_pred HHHHHHc--CCceeeccCCCCHHH--HHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEcCCC------------C
Q 003887 487 ESQLAQK--GFKAAALHGDKDQAS--RMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIAR------------D 550 (789)
Q Consensus 487 ~~~L~~~--g~~v~~lhg~~~~~e--R~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~------------s 550 (789)
++.|.+. +.++..+.++.+... -+..+..|.+|+.+|||.|.+++.|+|+|+++.|...|... .
T Consensus 497 eeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~ 576 (730)
T COG1198 497 EEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERT 576 (730)
T ss_pred HHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHH
Confidence 5555553 567888888877543 56789999999999999999999999999999988766543 2
Q ss_pred HHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHH
Q 003887 551 MDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAG 584 (789)
Q Consensus 551 ~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~ 584 (789)
..-+.|-.||+||.+ ++|.+++-....+...+.
T Consensus 577 fqll~QvaGRAgR~~-~~G~VvIQT~~P~hp~i~ 609 (730)
T COG1198 577 FQLLMQVAGRAGRAG-KPGEVVIQTYNPDHPAIQ 609 (730)
T ss_pred HHHHHHHHhhhccCC-CCCeEEEEeCCCCcHHHH
Confidence 455678899999997 678887766555544333
No 129
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.82 E-value=9.3e-19 Score=206.58 Aligned_cols=148 Identities=22% Similarity=0.336 Sum_probs=127.6
Q ss_pred cchHHHHHHhcCCCCC-CCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhc
Q 003887 454 AEKLPWLLEKLPGMID-DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAAR 532 (789)
Q Consensus 454 ~~k~~~L~~~L~~~~~-~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~ 532 (789)
..++..|++.|..... +.++||||+++..++.|+..|...++.+..+||++++.+|..++..|+.|.+.|||||+++++
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~r 508 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLRE 508 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhC
Confidence 3456677777765443 458999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccEEEEEcC-----CCCHHHHHHHHhhcCCCCCCCeEEEEEEcc---------ccHHHHHHHHHHHHHcCCCcc
Q 003887 533 GLDIKSIKSVVNFDI-----ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ---------KEARFAGELVNSLIAAGQNVS 598 (789)
Q Consensus 533 GlDI~~v~~VI~~d~-----p~s~~~y~QriGR~gR~G~~~G~~i~l~~~---------~d~~~~~~l~~~L~~~~~~vp 598 (789)
|+|+|++++||++|. |.+...|+||+||+||. ..|.|++|++. .+....+++...+......+|
T Consensus 509 Gfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~--~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 586 (652)
T PRK05298 509 GLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN--VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITP 586 (652)
T ss_pred CccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC--CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCC
Confidence 999999999999885 78999999999999995 47999999984 455566666667777777777
Q ss_pred HHHHH
Q 003887 599 MELMD 603 (789)
Q Consensus 599 ~~l~~ 603 (789)
.....
T Consensus 587 ~~~~~ 591 (652)
T PRK05298 587 KTIKK 591 (652)
T ss_pred hhHHH
Confidence 76644
No 130
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.81 E-value=3.4e-18 Score=202.57 Aligned_cols=299 Identities=17% Similarity=0.165 Sum_probs=180.8
Q ss_pred CcHHHHHHHHHHH----c------CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHH
Q 003887 248 PTSIQCQALPIIL----S------GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLE 317 (789)
Q Consensus 248 ptpiQ~~ai~~il----~------grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~ 317 (789)
++++|..|+..++ . .+..|++.+||||||++.+..+ ..++.. ...+++|||||+.+|..||.+.
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la-~~l~~~-----~~~~~vl~lvdR~~L~~Q~~~~ 312 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAA-RKALEL-----LKNPKVFFVVDRRELDYQLMKE 312 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHH-HHHHhh-----cCCCeEEEEECcHHHHHHHHHH
Confidence 7899999998764 2 2579999999999998755444 333321 3468899999999999999999
Q ss_pred HHHHhhhcCcEEEEEEcCCChHHHHHHHhc-CCcEEEeCHHHHHHHHhhc--cccccc-eeEEEEcccchhccCCChHHH
Q 003887 318 TKKFAKSHGIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMK--ALTMSR-VTYLVLDEADRMFDLGFEPQI 393 (789)
Q Consensus 318 ~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~-~~dIiV~Tp~~L~~~l~~~--~~~l~~-i~~lVlDEah~m~~~~f~~~i 393 (789)
+..+... . ...-.+.......+.. ...|+|+|.+.|...+... .....+ --+||+||||+.... .+
T Consensus 313 f~~~~~~----~--~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~----~~ 382 (667)
T TIGR00348 313 FQSLQKD----C--AERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG----EL 382 (667)
T ss_pred HHhhCCC----C--CcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch----HH
Confidence 9988531 1 1111122222223332 3689999999998644321 111111 128999999985532 23
Q ss_pred HHHHhhcCCCceEEEEeccCcHHHHHHHHHHh----CCCeEEeeccccCccccceEEE--E------ecC----------
Q 003887 394 RSIVGQIRPDRQTLLFSATMPRKVEKLAREIL----SDPVRVTVGEVGMANEDITQVV--H------VIP---------- 451 (789)
Q Consensus 394 ~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l----~~p~~i~i~~~~~~~~~i~q~~--~------~~~---------- 451 (789)
...+...-++...++||||+-..........+ ++++....- ...........+ . .+.
T Consensus 383 ~~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~-~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~ 461 (667)
T TIGR00348 383 AKNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFI-TDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDE 461 (667)
T ss_pred HHHHHhhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeH-HHHhhcCCeeeEEEEecchhhccChHHHHHHHHH
Confidence 33343333467899999998532111111111 122111100 000000000000 0 000
Q ss_pred ------C----------------------CcchHHH----HHHhcCCCC--CCCcEEEEecccccHHHHHHHHHHc----
Q 003887 452 ------S----------------------DAEKLPW----LLEKLPGMI--DDGDVLVFASKKTTVDEIESQLAQK---- 493 (789)
Q Consensus 452 ------~----------------------~~~k~~~----L~~~L~~~~--~~~kvLVF~~s~~~a~~l~~~L~~~---- 493 (789)
. ....... +++...... ..++.+|||.++..|..+.+.|.+.
T Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~ 541 (667)
T TIGR00348 462 IFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEK 541 (667)
T ss_pred HHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccc
Confidence 0 0000011 111111111 1379999999999999999988664
Q ss_pred -CCceeeccCCCCHH---------------------HHHHHHHHhhc-CCccEEEeehhhhccCCCCCccEEEEEcCCCC
Q 003887 494 -GFKAAALHGDKDQA---------------------SRMEILQKFKS-GVYHVLIATDVAARGLDIKSIKSVVNFDIARD 550 (789)
Q Consensus 494 -g~~v~~lhg~~~~~---------------------eR~~~l~~F~~-G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s 550 (789)
+...+++++..... ....++++|++ +..+|||+++++..|+|.|.+++++..-+-.+
T Consensus 542 ~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~ 621 (667)
T TIGR00348 542 FEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY 621 (667)
T ss_pred cCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccccc
Confidence 24456666654332 22478889976 68899999999999999999999998877665
Q ss_pred HHHHHHHHhhcCCC
Q 003887 551 MDMHVHRIGRTGRA 564 (789)
Q Consensus 551 ~~~y~QriGR~gR~ 564 (789)
. .++|++||+.|.
T Consensus 622 h-~LlQai~R~nR~ 634 (667)
T TIGR00348 622 H-GLLQAIARTNRI 634 (667)
T ss_pred c-HHHHHHHHhccc
Confidence 4 589999999994
No 131
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=5.9e-18 Score=193.45 Aligned_cols=316 Identities=21% Similarity=0.237 Sum_probs=215.3
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003887 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~ 325 (789)
..|++.|.-+.-.+++| -|+...||.|||+++.+|++...+. |..|.||+|+.-||.|-++++..+...+
T Consensus 77 ~r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL~--------G~~VhvvT~NdyLA~RDae~m~~ly~~L 146 (764)
T PRK12326 77 LRPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYALQ--------GRRVHVITVNDYLARRDAEWMGPLYEAL 146 (764)
T ss_pred CCcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHHc--------CCCeEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 36888999888888877 4779999999999999998877643 5668999999999999999999999999
Q ss_pred CcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHH-HHHhh------ccccccceeEEEEcccchhcc-C----------
Q 003887 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLI-DMLKM------KALTMSRVTYLVLDEADRMFD-L---------- 387 (789)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~-~~l~~------~~~~l~~i~~lVlDEah~m~~-~---------- 387 (789)
|++|.++.++.+..+. +... .|||+.+|..-|- +.|+. .......+.++||||+|.|+- .
T Consensus 147 GLsvg~i~~~~~~~er-r~aY-~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~ 224 (764)
T PRK12326 147 GLTVGWITEESTPEER-RAAY-ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGS 224 (764)
T ss_pred CCEEEEECCCCCHHHH-HHHH-cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCC
Confidence 9999999888765533 3333 4999999987652 22221 222345688999999997631 0
Q ss_pred ----CChHHHHHHHhhcCCC------------------------------------------------------------
Q 003887 388 ----GFEPQIRSIVGQIRPD------------------------------------------------------------ 403 (789)
Q Consensus 388 ----~f~~~i~~il~~~~~~------------------------------------------------------------ 403 (789)
.....+..+...+...
T Consensus 225 ~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dY 304 (764)
T PRK12326 225 TPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHY 304 (764)
T ss_pred CcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcE
Confidence 0111122222222110
Q ss_pred ----------------------------------------------------------ceEEEEeccCcHHHHHHHHHHh
Q 003887 404 ----------------------------------------------------------RQTLLFSATMPRKVEKLAREIL 425 (789)
Q Consensus 404 ----------------------------------------------------------~q~ll~SATl~~~v~~l~~~~l 425 (789)
..+.+||.|.....+++. .++
T Consensus 305 iV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~-~iY 383 (764)
T PRK12326 305 IVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLR-QFY 383 (764)
T ss_pred EEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHH-HHh
Confidence 123344444433322222 222
Q ss_pred CCCeEEeeccccCccccceEEEEecCCCcchHHHHHHhcCCCC-CCCcEEEEecccccHHHHHHHHHHcCCceeeccCCC
Q 003887 426 SDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDK 504 (789)
Q Consensus 426 ~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~ 504 (789)
+-++.+.....+....+.. -.+......|+..+++.+.+.. .+.+|||.|.+.+..+.|+..|.+.+++..+|+..-
T Consensus 384 ~l~Vv~IPtnkp~~R~d~~--d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~ 461 (764)
T PRK12326 384 DLGVSVIPPNKPNIREDEA--DRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKN 461 (764)
T ss_pred CCcEEECCCCCCceeecCC--CceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCc
Confidence 2222111111111111111 1222234567777877776543 455999999999999999999999999999999864
Q ss_pred CHHHHHHHHHHhhcC-CccEEEeehhhhccCCCC---------------CccEEEEEcCCCCHHHHHHHHhhcCCCCCCC
Q 003887 505 DQASRMEILQKFKSG-VYHVLIATDVAARGLDIK---------------SIKSVVNFDIARDMDMHVHRIGRTGRAGDKD 568 (789)
Q Consensus 505 ~~~eR~~~l~~F~~G-~~~VLVaT~v~~~GlDI~---------------~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~ 568 (789)
...+ ..++. ..| .-.|.|||++++||.||. +=-|||-...+.|...-.|-.||+||.| .+
T Consensus 462 ~~~E-A~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQG-Dp 537 (764)
T PRK12326 462 DAEE-ARIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQG-DP 537 (764)
T ss_pred hHhH-HHHHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCC-CC
Confidence 4333 22222 234 346999999999999997 2348999999999999999999999999 68
Q ss_pred eEEEEEEccccH
Q 003887 569 GTAYTLVTQKEA 580 (789)
Q Consensus 569 G~~i~l~~~~d~ 580 (789)
|.+..|++-+|.
T Consensus 538 Gss~f~lSleDd 549 (764)
T PRK12326 538 GSSVFFVSLEDD 549 (764)
T ss_pred CceeEEEEcchh
Confidence 999999887664
No 132
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.80 E-value=1.4e-18 Score=197.97 Aligned_cols=297 Identities=20% Similarity=0.249 Sum_probs=193.1
Q ss_pred CCCcHHHHHHHHHHH----cC-CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHH
Q 003887 246 EKPTSIQCQALPIIL----SG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK 320 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il----~g-rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k 320 (789)
..|+.+|..||..+. .| +.+|+++.||+|||.. .+.++..|++. ..-.++|+|+-++.|+.|.+..+..
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrT-Aiaii~rL~r~-----~~~KRVLFLaDR~~Lv~QA~~af~~ 237 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRT-AIAIIDRLIKS-----GWVKRVLFLADRNALVDQAYGAFED 237 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCccee-HHHHHHHHHhc-----chhheeeEEechHHHHHHHHHHHHH
Confidence 358999999997765 34 4589999999999987 45566666554 3456799999999999999999998
Q ss_pred HhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhc-----cccccceeEEEEcccchhccCCChHHHHH
Q 003887 321 FAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK-----ALTMSRVTYLVLDEADRMFDLGFEPQIRS 395 (789)
Q Consensus 321 ~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~-----~~~l~~i~~lVlDEah~m~~~~f~~~i~~ 395 (789)
+.+.. -.+..+.+-... ..++|.|+|+..+...+... .+....+++||||||||-. ......
T Consensus 238 ~~P~~-~~~n~i~~~~~~--------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----~~~~~~ 304 (875)
T COG4096 238 FLPFG-TKMNKIEDKKGD--------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----YSEWSS 304 (875)
T ss_pred hCCCc-cceeeeecccCC--------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----HhhhHH
Confidence 87642 222222221111 14899999999999888654 2334558999999999833 333445
Q ss_pred HHhhcCCCceEEEEeccCcHHHHHHHHHHh-CCCeEEe------------------ec----cccCcccc----------
Q 003887 396 IVGQIRPDRQTLLFSATMPRKVEKLAREIL-SDPVRVT------------------VG----EVGMANED---------- 442 (789)
Q Consensus 396 il~~~~~~~q~ll~SATl~~~v~~l~~~~l-~~p~~i~------------------i~----~~~~~~~~---------- 442 (789)
|+.++..-+ +++|||+...+..---.|+ +.|+..+ +. ..+.....
T Consensus 305 I~dYFdA~~--~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~ 382 (875)
T COG4096 305 ILDYFDAAT--QGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGE 382 (875)
T ss_pred HHHHHHHHH--HhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhcc
Confidence 665554333 3449998654332222233 3332211 10 00000000
Q ss_pred -c---eEEEEec--------CCCcch-HHHHHHhcCCC--C-CCCcEEEEecccccHHHHHHHHHHc-----CCceeecc
Q 003887 443 -I---TQVVHVI--------PSDAEK-LPWLLEKLPGM--I-DDGDVLVFASKKTTVDEIESQLAQK-----GFKAAALH 501 (789)
Q Consensus 443 -i---~q~~~~~--------~~~~~k-~~~L~~~L~~~--~-~~~kvLVF~~s~~~a~~l~~~L~~~-----g~~v~~lh 501 (789)
+ .+.+... +..... ...|.+.+... . .-+|+||||.+..+|+.+...|... +--+..|.
T Consensus 383 ~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT 462 (875)
T COG4096 383 AIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKIT 462 (875)
T ss_pred ccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEe
Confidence 0 0000000 000001 12233444431 1 1359999999999999999999764 34477788
Q ss_pred CCCCHHHHHHHHHHhhc--CCccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCC
Q 003887 502 GDKDQASRMEILQKFKS--GVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG 565 (789)
Q Consensus 502 g~~~~~eR~~~l~~F~~--G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G 565 (789)
|+..+.++ .+..|.. .-.+|.|+.+++..|+|+|.|..+|++-.-.|..-|.|++||.-|.-
T Consensus 463 ~d~~~~q~--~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~ 526 (875)
T COG4096 463 GDAEQAQA--LIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLC 526 (875)
T ss_pred ccchhhHH--HHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccC
Confidence 87766543 3666654 34567778899999999999999999999999999999999999974
No 133
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.77 E-value=6.7e-17 Score=175.41 Aligned_cols=165 Identities=23% Similarity=0.332 Sum_probs=127.6
Q ss_pred CceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHHHHhcCCC-CCCCcEEEEecccc
Q 003887 403 DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGM-IDDGDVLVFASKKT 481 (789)
Q Consensus 403 ~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~-~~~~kvLVF~~s~~ 481 (789)
..|+|++|||+.+.-.+.. -++-+.-.+...+...+.|.. .........|+..+... ..+.++||-+=|++
T Consensus 386 ~~q~i~VSATPg~~E~e~s---~~~vveQiIRPTGLlDP~iev-----Rp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKk 457 (663)
T COG0556 386 IPQTIYVSATPGDYELEQS---GGNVVEQIIRPTGLLDPEIEV-----RPTKGQVDDLLSEIRKRVAKNERVLVTTLTKK 457 (663)
T ss_pred cCCEEEEECCCChHHHHhc---cCceeEEeecCCCCCCCceee-----ecCCCcHHHHHHHHHHHHhcCCeEEEEeehHH
Confidence 3699999999865421111 112233334344443333322 12344566666666553 34569999999999
Q ss_pred cHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEcCC-----CCHHHHHH
Q 003887 482 TVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIA-----RDMDMHVH 556 (789)
Q Consensus 482 ~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p-----~s~~~y~Q 556 (789)
.++.|.++|.+.|+++..+|++...-+|.+++..++.|.++|||.-+.+-+|||+|.|.+|.++|.. .+-...+|
T Consensus 458 mAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQ 537 (663)
T COG0556 458 MAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQ 537 (663)
T ss_pred HHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999864 57889999
Q ss_pred HHhhcCCCCCCCeEEEEEEcc
Q 003887 557 RIGRTGRAGDKDGTAYTLVTQ 577 (789)
Q Consensus 557 riGR~gR~G~~~G~~i~l~~~ 577 (789)
-|||+.|.- .|.++++...
T Consensus 538 tIGRAARN~--~GkvIlYAD~ 556 (663)
T COG0556 538 TIGRAARNV--NGKVILYADK 556 (663)
T ss_pred HHHHHhhcc--CCeEEEEchh
Confidence 999999975 6888877654
No 134
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=1.8e-17 Score=193.82 Aligned_cols=316 Identities=18% Similarity=0.207 Sum_probs=209.1
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003887 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (789)
Q Consensus 247 ~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~ 326 (789)
.|+++|.-+--.+ .+.-|....||.|||+++.+|++...+ .|..|-||+||.-||.|-++++..+...+|
T Consensus 82 ~~ydVQliGg~~L--h~G~iaEM~TGEGKTLvA~l~a~l~al--------~G~~VhvvT~ndyLA~RD~e~m~~l~~~lG 151 (913)
T PRK13103 82 RHFDVQLIGGMTL--HEGKIAEMRTGEGKTLVGTLAVYLNAL--------SGKGVHVVTVNDYLARRDANWMRPLYEFLG 151 (913)
T ss_pred CcchhHHHhhhHh--ccCccccccCCCCChHHHHHHHHHHHH--------cCCCEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 4566666554444 455788999999999999999987663 366689999999999999999999999999
Q ss_pred cEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHH-HHHHhhc------cccccceeEEEEcccchhcc-CC----------
Q 003887 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMK------ALTMSRVTYLVLDEADRMFD-LG---------- 388 (789)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L-~~~l~~~------~~~l~~i~~lVlDEah~m~~-~~---------- 388 (789)
++|.++.++.+..+.. ... .++|+++|..-| .+.|... ......+.++||||+|.|+- ..
T Consensus 152 l~v~~i~~~~~~~err-~~Y-~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~~ 229 (913)
T PRK13103 152 LSVGIVTPFQPPEEKR-AAY-AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQA 229 (913)
T ss_pred CEEEEECCCCCHHHHH-HHh-cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecCCC
Confidence 9999998877655433 222 399999999886 2333221 12347789999999998741 00
Q ss_pred -----ChHHHHHHHhhcCC-------------------C-----------------------------------------
Q 003887 389 -----FEPQIRSIVGQIRP-------------------D----------------------------------------- 403 (789)
Q Consensus 389 -----f~~~i~~il~~~~~-------------------~----------------------------------------- 403 (789)
....+..++..+.. .
T Consensus 230 ~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~ 309 (913)
T PRK13103 230 EDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTH 309 (913)
T ss_pred ccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHHH
Confidence 11111122221100 0
Q ss_pred ---------------------------------------------------------------------------ceEEE
Q 003887 404 ---------------------------------------------------------------------------RQTLL 408 (789)
Q Consensus 404 ---------------------------------------------------------------------------~q~ll 408 (789)
.++.+
T Consensus 310 i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsG 389 (913)
T PRK13103 310 VYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSG 389 (913)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhcc
Confidence 01222
Q ss_pred EeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHHHHhcCCCCC-CCcEEEEecccccHHHHH
Q 003887 409 FSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMID-DGDVLVFASKKTTVDEIE 487 (789)
Q Consensus 409 ~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~-~~kvLVF~~s~~~a~~l~ 487 (789)
||.|......+ +..+++-++.+.....+....+... .++.....|+..+++.+..... +.+|||-+.+.+..+.|+
T Consensus 390 MTGTa~te~~E-f~~iY~l~Vv~IPTnkP~~R~D~~d--~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls 466 (913)
T PRK13103 390 MTGTADTEAFE-FRQIYGLDVVVIPPNKPLARKDFND--LVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMS 466 (913)
T ss_pred CCCCCHHHHHH-HHHHhCCCEEECCCCCCcccccCCC--eEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHH
Confidence 22222211111 1111111111111111111111111 1223456788888777765544 459999999999999999
Q ss_pred HHHHHcCCceeeccCCCCHHHHHHHHHHhhcC-CccEEEeehhhhccCCCC-----------------------------
Q 003887 488 SQLAQKGFKAAALHGDKDQASRMEILQKFKSG-VYHVLIATDVAARGLDIK----------------------------- 537 (789)
Q Consensus 488 ~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G-~~~VLVaT~v~~~GlDI~----------------------------- 537 (789)
..|.+.+++..+|+......+-+ ++. ..| .-.|.|||++|+||.||.
T Consensus 467 ~~L~~~gi~h~VLNAk~~~~EA~-IIa--~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (913)
T PRK13103 467 NLLKKEGIEHKVLNAKYHEKEAE-IIA--QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQK 543 (913)
T ss_pred HHHHHcCCcHHHhccccchhHHH-HHH--cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHh
Confidence 99999999998888764433322 222 345 456999999999999995
Q ss_pred --------CccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHH
Q 003887 538 --------SIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581 (789)
Q Consensus 538 --------~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~ 581 (789)
+=-|||--..+.|..--.|-.||+||.| .+|.+..|++-+|.-
T Consensus 544 ~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQG-DPGsS~f~lSlED~L 594 (913)
T PRK13103 544 RHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQG-DPGSSRFYLSLEDSL 594 (913)
T ss_pred HHHHHHHcCCCEEEeeccCchHHHHHHhccccccCC-CCCceEEEEEcCcHH
Confidence 2337888889999999999999999999 689999999887653
No 135
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.75 E-value=2.8e-16 Score=189.46 Aligned_cols=327 Identities=19% Similarity=0.240 Sum_probs=204.3
Q ss_pred CCCCCcHHHHHHHHHHH----cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHH-HHHH
Q 003887 244 GYEKPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI-YLET 318 (789)
Q Consensus 244 g~~~ptpiQ~~ai~~il----~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi-~~~~ 318 (789)
+| .+++-|.+.+..+. .+..+++.|+||+|||++|++|++.+. .+.++||++||++|+.|+ .+.+
T Consensus 243 ~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~---------~~~~vvI~t~T~~Lq~Ql~~~~i 312 (820)
T PRK07246 243 GL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS---------DQRQIIVSVPTKILQDQIMAEEV 312 (820)
T ss_pred CC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc---------CCCcEEEEeCcHHHHHHHHHHHH
Confidence 44 58999999665544 567899999999999999999988763 246799999999999999 4778
Q ss_pred HHHhhhcCcEEEEEEcCCChH-----HH------------------------------------------HHHH------
Q 003887 319 KKFAKSHGIRVSAVYGGMSKL-----DQ------------------------------------------FKEL------ 345 (789)
Q Consensus 319 ~k~~~~~~i~v~~~~gg~~~~-----~~------------------------------------------~~~l------ 345 (789)
..+.+..++++.++.|+...- .+ +..+
T Consensus 313 ~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~ 392 (820)
T PRK07246 313 KAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNL 392 (820)
T ss_pred HHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCC
Confidence 877777788888777765311 00 0000
Q ss_pred ------------------hcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCC-----C-------hHH---
Q 003887 346 ------------------KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG-----F-------EPQ--- 392 (789)
Q Consensus 346 ------------------~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~-----f-------~~~--- 392 (789)
...+||||+.+..|...+.... .+..+++|||||||++.+.. . ...
T Consensus 393 ~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~ 471 (820)
T PRK07246 393 SQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQK 471 (820)
T ss_pred CCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHH
Confidence 1128999999998887664433 36789999999999874310 0 000
Q ss_pred -----------------------------------------------H-----------HHHHhh------c--------
Q 003887 393 -----------------------------------------------I-----------RSIVGQ------I-------- 400 (789)
Q Consensus 393 -----------------------------------------------i-----------~~il~~------~-------- 400 (789)
+ ..++.. +
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~ 551 (820)
T PRK07246 472 ALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEK 551 (820)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCc
Confidence 0 000000 0
Q ss_pred -------------------CCCceEEEEeccCc--HHHHHHHHHHhCCC--eEEeeccccCccccceEEEEec----CCC
Q 003887 401 -------------------RPDRQTLLFSATMP--RKVEKLAREILSDP--VRVTVGEVGMANEDITQVVHVI----PSD 453 (789)
Q Consensus 401 -------------------~~~~q~ll~SATl~--~~v~~l~~~~l~~p--~~i~i~~~~~~~~~i~q~~~~~----~~~ 453 (789)
+....+|++|||++ +.. .+ ...++-. ....+ .... . .+...++ +..
T Consensus 552 ~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f-~~-~~~lGl~~~~~~~~---~~~~-~-~~~~~~i~~~~p~~ 624 (820)
T PRK07246 552 RVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRV-SL-ADLLGFEEYLFHKI---EKDK-K-QDQLVVVDQDMPLV 624 (820)
T ss_pred ceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCC-cH-HHHcCCCccceecC---CCCh-H-HccEEEeCCCCCCC
Confidence 00135788888875 222 23 2223311 11111 1111 1 1222222 111
Q ss_pred -----cchHHHHHHhcCCC-CCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEee
Q 003887 454 -----AEKLPWLLEKLPGM-IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT 527 (789)
Q Consensus 454 -----~~k~~~L~~~L~~~-~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT 527 (789)
..-...+.+.|... ...|++||++++++.++.++..|....+.+ ...|... .+..++++|+++...||++|
T Consensus 625 ~~~~~~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~ 701 (820)
T PRK07246 625 TETSDEVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGL 701 (820)
T ss_pred CCCChHHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEec
Confidence 11112333332211 246899999999999999999997665555 5555322 25668999999888999999
Q ss_pred hhhhccCCCCC--ccEEEEEcCCC----C--------------------------HHHHHHHHhhcCCCCCCCeEEEEEE
Q 003887 528 DVAARGLDIKS--IKSVVNFDIAR----D--------------------------MDMHVHRIGRTGRAGDKDGTAYTLV 575 (789)
Q Consensus 528 ~v~~~GlDI~~--v~~VI~~d~p~----s--------------------------~~~y~QriGR~gR~G~~~G~~i~l~ 575 (789)
..+.+|+|+|+ ...||+..+|. + ...+.|.+||.-|.-...|.++++-
T Consensus 702 ~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD 781 (820)
T PRK07246 702 GSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILD 781 (820)
T ss_pred chhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEEC
Confidence 99999999974 56667666552 2 2223599999999875567655443
Q ss_pred ccc-cHHHHHHHHHHHH
Q 003887 576 TQK-EARFAGELVNSLI 591 (789)
Q Consensus 576 ~~~-d~~~~~~l~~~L~ 591 (789)
..- ...+-+.+++.|-
T Consensus 782 ~R~~~k~Yg~~~l~sLP 798 (820)
T PRK07246 782 RRILTKSYGKQILASLA 798 (820)
T ss_pred CcccccHHHHHHHHhCC
Confidence 332 3455566666664
No 136
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.74 E-value=2.9e-17 Score=175.64 Aligned_cols=328 Identities=19% Similarity=0.262 Sum_probs=209.6
Q ss_pred CCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEE
Q 003887 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (789)
Q Consensus 224 i~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLI 303 (789)
++.|....++++..+.|++..-...+.++.+.+..+.+++-++++++||||||.+ +|-+..-...+. ...+..
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQ--iPq~~~~~~~~~-----~~~v~C 96 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQ--IPQFVLEYELSH-----LTGVAC 96 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCcccc--CcHHHHHHHHhh-----ccceee
Confidence 6778888899999998887755555666777778888889999999999999987 443322211111 133667
Q ss_pred EcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccch
Q 003887 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (789)
Q Consensus 304 l~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~ 383 (789)
..|.|..|.+++.. .+...++....-+|..-..+.+.. ...-+-.||.+.|+....... .+.++++||+||||.
T Consensus 97 TQprrvaamsva~R---VadEMDv~lG~EVGysIrfEdC~~--~~T~Lky~tDgmLlrEams~p-~l~~y~viiLDeahE 170 (699)
T KOG0925|consen 97 TQPRRVAAMSVAQR---VADEMDVTLGEEVGYSIRFEDCTS--PNTLLKYCTDGMLLREAMSDP-LLGRYGVIILDEAHE 170 (699)
T ss_pred cCchHHHHHHHHHH---HHHHhccccchhccccccccccCC--hhHHHHHhcchHHHHHHhhCc-ccccccEEEechhhh
Confidence 78999999887544 444445555444443333222100 001133577777776654444 488999999999994
Q ss_pred -hccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHHHH
Q 003887 384 -MFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462 (789)
Q Consensus 384 -m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~ 462 (789)
-+..+..-.+.+-+..-+++.++|+||||+-.. -++.|+.++-.+.+.. ...++. ++.-....+.+...+.
T Consensus 171 RtlATDiLmGllk~v~~~rpdLk~vvmSatl~a~---Kfq~yf~n~Pll~vpg----~~PvEi-~Yt~e~erDylEaair 242 (699)
T KOG0925|consen 171 RTLATDILMGLLKEVVRNRPDLKLVVMSATLDAE---KFQRYFGNAPLLAVPG----THPVEI-FYTPEPERDYLEAAIR 242 (699)
T ss_pred hhHHHHHHHHHHHHHHhhCCCceEEEeecccchH---HHHHHhCCCCeeecCC----CCceEE-EecCCCChhHHHHHHH
Confidence 222211111222222335799999999998532 3566677665555532 122222 2222222233332222
Q ss_pred h---cCCCCCCCcEEEEecccccHHHHHHHHHHc---------CCceeeccCCCCHHHHHHHHHHhhc---C--CccEEE
Q 003887 463 K---LPGMIDDGDVLVFASKKTTVDEIESQLAQK---------GFKAAALHGDKDQASRMEILQKFKS---G--VYHVLI 525 (789)
Q Consensus 463 ~---L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~---------g~~v~~lhg~~~~~eR~~~l~~F~~---G--~~~VLV 525 (789)
. |......|.+|||....++.+..++.+... .+.|..|| +.+...+++-... | ..+|+|
T Consensus 243 tV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVv 318 (699)
T KOG0925|consen 243 TVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVV 318 (699)
T ss_pred HHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEE
Confidence 2 222335789999999999999888888743 35688888 4444444443321 2 357999
Q ss_pred eehhhhccCCCCCccEEEEEcC------------------CCCHHHHHHHHhhcCCCCCCCeEEEEEEccc
Q 003887 526 ATDVAARGLDIKSIKSVVNFDI------------------ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK 578 (789)
Q Consensus 526 aT~v~~~GlDI~~v~~VI~~d~------------------p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~ 578 (789)
+|.+++..+.|++|.+||.-++ |-+-..-.||.||+||. ++|.|+.|++++
T Consensus 319 stniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt--~pGkcfrLYte~ 387 (699)
T KOG0925|consen 319 STNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT--RPGKCFRLYTEE 387 (699)
T ss_pred EecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC--CCCceEEeecHH
Confidence 9999999999999999996332 44566667999999987 589999999874
No 137
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.74 E-value=2.2e-18 Score=184.43 Aligned_cols=310 Identities=18% Similarity=0.235 Sum_probs=204.5
Q ss_pred CCCcHHHHHHHHHHHc-C--CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHh
Q 003887 246 EKPTSIQCQALPIILS-G--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~-g--rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~ 322 (789)
..++|||..++..++- | |..||+.|+|+|||++-+.++ ..+ ...+||||.+-.-+.||...++.|+
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa-~ti----------kK~clvLcts~VSVeQWkqQfk~ws 369 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAA-CTI----------KKSCLVLCTSAVSVEQWKQQFKQWS 369 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeee-eee----------cccEEEEecCccCHHHHHHHHHhhc
Confidence 5789999999999883 3 689999999999998754433 333 3459999999999999999999998
Q ss_pred hhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhh--------ccccccceeEEEEcccchhccCCChHHHH
Q 003887 323 KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM--------KALTMSRVTYLVLDEADRMFDLGFEPQIR 394 (789)
Q Consensus 323 ~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~--------~~~~l~~i~~lVlDEah~m~~~~f~~~i~ 394 (789)
...+-.++.++...... ...++.|+|+|+.++..--++ ..+.-..|.++|+||+|.+...-|...+.
T Consensus 370 ti~d~~i~rFTsd~Ke~-----~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVls 444 (776)
T KOG1123|consen 370 TIQDDQICRFTSDAKER-----FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLS 444 (776)
T ss_pred ccCccceEEeecccccc-----CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHH
Confidence 76666677776654332 245799999999877432211 12234569999999999876655665555
Q ss_pred HHHhhcCCCceEEEEeccCcHHHHHHHH-HHhCCCeEEeeccccCc----cccceEEEEecC------------------
Q 003887 395 SIVGQIRPDRQTLLFSATMPRKVEKLAR-EILSDPVRVTVGEVGMA----NEDITQVVHVIP------------------ 451 (789)
Q Consensus 395 ~il~~~~~~~q~ll~SATl~~~v~~l~~-~~l~~p~~i~i~~~~~~----~~~i~q~~~~~~------------------ 451 (789)
-+-.++. |++|||+-++-..+.. .|+..|......-.... ...+...-.+|+
T Consensus 445 iv~aHcK-----LGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~ 519 (776)
T KOG1123|consen 445 IVQAHCK-----LGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRM 519 (776)
T ss_pred HHHHHhh-----ccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhh
Confidence 5545443 8999998654222211 12222211111100000 001111111111
Q ss_pred ----CCcchHH---HHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcC-CccE
Q 003887 452 ----SDAEKLP---WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSG-VYHV 523 (789)
Q Consensus 452 ----~~~~k~~---~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G-~~~V 523 (789)
-...|+. .|+..-.+ .+.++|||....-....++-.|.+ -.|+|..+|.+|.++++.|+-+ .++.
T Consensus 520 lLyvMNP~KFraCqfLI~~HE~--RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNT 592 (776)
T KOG1123|consen 520 LLYVMNPNKFRACQFLIKFHER--RGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNT 592 (776)
T ss_pred eeeecCcchhHHHHHHHHHHHh--cCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccce
Confidence 0123333 23322222 456999999876655555544432 3689999999999999999864 6788
Q ss_pred EEeehhhhccCCCCCccEEEEEcCC-CCHHHHHHHHhhcCCCCC-----CCeEEEEEEccccHHHH
Q 003887 524 LIATDVAARGLDIKSIKSVVNFDIA-RDMDMHVHRIGRTGRAGD-----KDGTAYTLVTQKEARFA 583 (789)
Q Consensus 524 LVaT~v~~~GlDI~~v~~VI~~d~p-~s~~~y~QriGR~gR~G~-----~~G~~i~l~~~~d~~~~ 583 (789)
+.-..++...+|+|.++++|....- .+-..-.||+||..|+-. -....|+|++.+-.++.
T Consensus 593 IFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~ 658 (776)
T KOG1123|consen 593 IFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMY 658 (776)
T ss_pred EEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHH
Confidence 8889999999999999999987654 366777999999999851 12456778887654443
No 138
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.74 E-value=6.7e-17 Score=184.61 Aligned_cols=159 Identities=19% Similarity=0.240 Sum_probs=114.8
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhh-c
Q 003887 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS-H 325 (789)
Q Consensus 247 ~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~-~ 325 (789)
.|-.||.+.+..+-.+...+|+|||-+|||.+.-. ++..+++. .+...+|+++||.+|+.|+...+...... +
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY-~iEKVLRe-----sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFY-AIEKVLRE-----SDSDVVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHH-HHHHHHhh-----cCCCEEEEecchHHHhhhhhHHHHHhhccCc
Confidence 47899999999999999999999999999986433 34444443 34667899999999999998777765421 2
Q ss_pred CcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhh---ccccccceeEEEEcccchhccCCChHHHHHHHhhcCC
Q 003887 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM---KALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP 402 (789)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~---~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~ 402 (789)
-.+.+.+.|.....-++. .-.|.|+|+-|+.|..++.. ...+..++.+||+||+|.+.+..-.-.+..++..+
T Consensus 585 ~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li-- 660 (1330)
T KOG0949|consen 585 FLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI-- 660 (1330)
T ss_pred cccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--
Confidence 223333333322222211 11499999999999998876 44567899999999999988765444555555554
Q ss_pred CceEEEEeccCcH
Q 003887 403 DRQTLLFSATMPR 415 (789)
Q Consensus 403 ~~q~ll~SATl~~ 415 (789)
.+.+|++|||+-+
T Consensus 661 ~CP~L~LSATigN 673 (1330)
T KOG0949|consen 661 PCPFLVLSATIGN 673 (1330)
T ss_pred CCCeeEEecccCC
Confidence 3668999999743
No 139
>COG4889 Predicted helicase [General function prediction only]
Probab=99.73 E-value=2.3e-17 Score=185.79 Aligned_cols=359 Identities=19% Similarity=0.206 Sum_probs=214.4
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC----CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCE
Q 003887 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG----RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPI 300 (789)
Q Consensus 225 ~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~g----rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~ 300 (789)
..|+.+.. .++..+|.-..-.+|+|+|++|+...+.| ...=+++.+|+|||...| -+...+. ..+
T Consensus 140 IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsL-kisEala---------~~~ 208 (1518)
T COG4889 140 IDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSL-KISEALA---------AAR 208 (1518)
T ss_pred CChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHH-HHHHHHh---------hhh
Confidence 34554433 45556666666679999999999999866 234456678999998743 3444442 256
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHH--------------------HHHHH-----hcCCcEEEeC
Q 003887 301 GVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD--------------------QFKEL-----KAGCEIVIAT 355 (789)
Q Consensus 301 vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~--------------------~~~~l-----~~~~dIiV~T 355 (789)
+|+|||+..|..|..+++..-. ...++...++....... ....+ ..+--||++|
T Consensus 209 iL~LvPSIsLLsQTlrew~~~~-~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsT 287 (1518)
T COG4889 209 ILFLVPSISLLSQTLREWTAQK-ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFST 287 (1518)
T ss_pred eEeecchHHHHHHHHHHHhhcc-CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEc
Confidence 9999999999999866655432 23566666665432111 11111 2356799999
Q ss_pred HHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcC-----CCceEEEEeccCcH---HH----------
Q 003887 356 PGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR-----PDRQTLLFSATMPR---KV---------- 417 (789)
Q Consensus 356 p~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~-----~~~q~ll~SATl~~---~v---------- 417 (789)
++.|..+-+.....+..+++||+|||||-........-...+.++. +..+.+.|+||+.- .+
T Consensus 288 YQSl~~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~ 367 (1518)
T COG4889 288 YQSLPRIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAE 367 (1518)
T ss_pred ccchHHHHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccce
Confidence 9999998888888899999999999998543211110011111111 12345778888621 11
Q ss_pred --------------------HHHHHHHhCCCeEEeeccccCccccceEEEEecCC------CcchHHHHHHhcC-CC---
Q 003887 418 --------------------EKLAREILSDPVRVTVGEVGMANEDITQVVHVIPS------DAEKLPWLLEKLP-GM--- 467 (789)
Q Consensus 418 --------------------~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~------~~~k~~~L~~~L~-~~--- 467 (789)
+.+.+.++.+...+...-.........|....-+. ...|+.-...-|. +.
T Consensus 368 l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~ 447 (1518)
T COG4889 368 LSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGED 447 (1518)
T ss_pred eeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhcccc
Confidence 11122333333222211111111111111111001 0111111111111 00
Q ss_pred ------CC----CCcEEEEecccccHHHHHHHHHHc---------------CCceeeccCCCCHHHHHHHHH---HhhcC
Q 003887 468 ------ID----DGDVLVFASKKTTVDEIESQLAQK---------------GFKAAALHGDKDQASRMEILQ---KFKSG 519 (789)
Q Consensus 468 ------~~----~~kvLVF~~s~~~a~~l~~~L~~~---------------g~~v~~lhg~~~~~eR~~~l~---~F~~G 519 (789)
.. -.+.|-||.+.++...+++.+.+. .+.+..+.|.|...+|...+. .|...
T Consensus 448 n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~n 527 (1518)
T COG4889 448 NDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPN 527 (1518)
T ss_pred ccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcc
Confidence 01 125788999888877777665431 345666779999998855444 34557
Q ss_pred CccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCC--CCCeEEEEEE-------------ccccHHHHH
Q 003887 520 VYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG--DKDGTAYTLV-------------TQKEARFAG 584 (789)
Q Consensus 520 ~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G--~~~G~~i~l~-------------~~~d~~~~~ 584 (789)
.++||--...+++|+|+|.++.||+|++-.+..+.+|.+||+.|-. .+.|..|.=+ ...+.+.+.
T Consensus 528 eckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIalpegi~p~~~l~~n~nFk~VW 607 (1518)
T COG4889 528 ECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIALPEGIKPLDELVNNTNFKNVW 607 (1518)
T ss_pred hheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEeccCCCCCchHHHhcCccHHHHH
Confidence 8899988899999999999999999999999999999999999975 2234333321 223455677
Q ss_pred HHHHHHHHcCC
Q 003887 585 ELVNSLIAAGQ 595 (789)
Q Consensus 585 ~l~~~L~~~~~ 595 (789)
++++.|.....
T Consensus 608 qVlnALRShD~ 618 (1518)
T COG4889 608 QVLKALRSHDE 618 (1518)
T ss_pred HHHHHHHhcCH
Confidence 78888876655
No 140
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.72 E-value=6e-17 Score=179.90 Aligned_cols=121 Identities=17% Similarity=0.281 Sum_probs=97.8
Q ss_pred CCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhc--CCcc-EEEeehhhhccCCCCCccEEEEE
Q 003887 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKS--GVYH-VLIATDVAARGLDIKSIKSVVNF 545 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~--G~~~-VLVaT~v~~~GlDI~~v~~VI~~ 545 (789)
...+++|..+=......++..|.+.|+.+..+||.....+|..+++.|.. |..+ .||+-.+.+.|||+.+.+|+|.+
T Consensus 745 skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilv 824 (901)
T KOG4439|consen 745 SKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILV 824 (901)
T ss_pred ccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEE
Confidence 34577777777777888999999999999999999999999999999964 4344 46667888999999999999999
Q ss_pred cCCCCHHHHHHHHhhcCCCCCCCeEE-EEEEccccHHHHHHHHHHHHH
Q 003887 546 DIARDMDMHVHRIGRTGRAGDKDGTA-YTLVTQKEARFAGELVNSLIA 592 (789)
Q Consensus 546 d~p~s~~~y~QriGR~gR~G~~~G~~-i~l~~~~d~~~~~~l~~~L~~ 592 (789)
|+-||+.--.|++.|+.|.|+++-+. +.|++..-. ++.+..|+.
T Consensus 825 DlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTv---EqrV~~LQd 869 (901)
T KOG4439|consen 825 DLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTV---EQRVKSLQD 869 (901)
T ss_pred ecccCHHHHHHHHHHHHHhcccCceEEEEEEecCcH---HHHHHHHHH
Confidence 99999999999999999999766554 456665433 233444443
No 141
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=2.1e-15 Score=174.87 Aligned_cols=316 Identities=19% Similarity=0.254 Sum_probs=209.7
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003887 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (789)
Q Consensus 247 ~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~ 326 (789)
.|+++|.-+.-.+..| -|....||-|||+++.+|+....+. |..|-||+..--||.-=.+++..+...+|
T Consensus 78 r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~--------GkgVhVVTvNdYLA~RDae~mg~vy~fLG 147 (925)
T PRK12903 78 RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALT--------GKGVIVSTVNEYLAERDAEEMGKVFNFLG 147 (925)
T ss_pred CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhc--------CCceEEEecchhhhhhhHHHHHHHHHHhC
Confidence 5777887777666555 5789999999999999998655433 45577888889999988889999999999
Q ss_pred cEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHH-HHHhhc------cccccceeEEEEcccchhc-cCC----------
Q 003887 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLI-DMLKMK------ALTMSRVTYLVLDEADRMF-DLG---------- 388 (789)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~-~~l~~~------~~~l~~i~~lVlDEah~m~-~~~---------- 388 (789)
+.|.++..+........ .-.|||+.+|..-|- +.|+.. ......+.|.||||+|.|+ |..
T Consensus 148 LsvG~i~~~~~~~~rr~--aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~~ 225 (925)
T PRK12903 148 LSVGINKANMDPNLKRE--AYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQ 225 (925)
T ss_pred CceeeeCCCCChHHHHH--hccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCCC
Confidence 99999988766554322 234999999988763 333321 2235668899999999763 100
Q ss_pred -----ChHHHHHHHhhcCC-------C-----------------------------------------------------
Q 003887 389 -----FEPQIRSIVGQIRP-------D----------------------------------------------------- 403 (789)
Q Consensus 389 -----f~~~i~~il~~~~~-------~----------------------------------------------------- 403 (789)
+...+..++..+.. .
T Consensus 226 ~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV 305 (925)
T PRK12903 226 SNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIV 305 (925)
T ss_pred ccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceEE
Confidence 11112222222211 0
Q ss_pred --------------------------------------------------------ceEEEEeccCcHHHHHHHHHHhCC
Q 003887 404 --------------------------------------------------------RQTLLFSATMPRKVEKLAREILSD 427 (789)
Q Consensus 404 --------------------------------------------------------~q~ll~SATl~~~v~~l~~~~l~~ 427 (789)
.++.+||.|......++.. +++-
T Consensus 306 ~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~-iY~l 384 (925)
T PRK12903 306 RDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFID-IYNM 384 (925)
T ss_pred ECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHH-HhCC
Confidence 1222333333222222221 1111
Q ss_pred CeEEeeccccCccccceEEEEecCCCcchHHHHHHhcCCCC-CCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCH
Q 003887 428 PVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQ 506 (789)
Q Consensus 428 p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~ 506 (789)
.+.......+....+... .++.....|+..+++.+.... .+.+|||.|.+.+..+.|+..|.+.|++..+|+....
T Consensus 385 ~Vv~IPTnkP~~R~D~~d--~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~- 461 (925)
T PRK12903 385 RVNVVPTNKPVIRKDEPD--SIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN- 461 (925)
T ss_pred CEEECCCCCCeeeeeCCC--cEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch-
Confidence 111111111111111111 122234577888877776543 4559999999999999999999999999999998633
Q ss_pred HHHHHHHHHhhcC-CccEEEeehhhhccCCCCCcc--------EEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEcc
Q 003887 507 ASRMEILQKFKSG-VYHVLIATDVAARGLDIKSIK--------SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (789)
Q Consensus 507 ~eR~~~l~~F~~G-~~~VLVaT~v~~~GlDI~~v~--------~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~ 577 (789)
+++..+-. ..| .-.|.|||++|+||.||.--. |||....+.|..--.|..||+||.| .+|.+.+|++-
T Consensus 462 -e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQG-DpGss~f~lSL 538 (925)
T PRK12903 462 -AREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQG-DVGESRFFISL 538 (925)
T ss_pred -hhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCC-CCCcceEEEec
Confidence 44433332 455 456999999999999997432 8999999999988999999999999 68999999887
Q ss_pred ccHH
Q 003887 578 KEAR 581 (789)
Q Consensus 578 ~d~~ 581 (789)
.|.-
T Consensus 539 eD~L 542 (925)
T PRK12903 539 DDQL 542 (925)
T ss_pred chHH
Confidence 7643
No 142
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.71 E-value=2.9e-16 Score=178.08 Aligned_cols=122 Identities=25% Similarity=0.334 Sum_probs=98.7
Q ss_pred hHHHHHHhcCCCCC-CCcEEEEecccccHHHHHHHHHHc----------------------CCceeeccCCCCHHHHHHH
Q 003887 456 KLPWLLEKLPGMID-DGDVLVFASKKTTVDEIESQLAQK----------------------GFKAAALHGDKDQASRMEI 512 (789)
Q Consensus 456 k~~~L~~~L~~~~~-~~kvLVF~~s~~~a~~l~~~L~~~----------------------g~~v~~lhg~~~~~eR~~~ 512 (789)
|+..|+++|..... +.++|||.++...++.|..+|... |.....|.|.....+|...
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 33344555543322 348999999999999999999752 4568889999999999999
Q ss_pred HHHhhcC----CccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeE-EEEEEcc
Q 003887 513 LQKFKSG----VYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGT-AYTLVTQ 577 (789)
Q Consensus 513 l~~F~~G----~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~-~i~l~~~ 577 (789)
...|++- ..-+||+|.+.+-|+|+-.++.||+||..|||..-+|.|=|+.|.|+.+.+ +|.|+..
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAq 1276 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQ 1276 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhc
Confidence 9999873 234799999999999999999999999999999999999999999965444 4555543
No 143
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.68 E-value=2.4e-16 Score=147.82 Aligned_cols=119 Identities=45% Similarity=0.718 Sum_probs=109.4
Q ss_pred chHHHHHHhcCCCC-CCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhcc
Q 003887 455 EKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARG 533 (789)
Q Consensus 455 ~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~G 533 (789)
.|...+...+.... ..+++||||++...++.++..|...+..+..+||.++..+|..++..|+++...|||+|.++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 67777777777654 46799999999999999999999989999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEE
Q 003887 534 LDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTL 574 (789)
Q Consensus 534 lDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l 574 (789)
+|+|.+++||++++|++...|+|++||++|.|+ .|.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~-~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQ-KGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCC-CceEEeC
Confidence 999999999999999999999999999999994 6777653
No 144
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.68 E-value=3e-14 Score=164.95 Aligned_cols=116 Identities=19% Similarity=0.211 Sum_probs=83.7
Q ss_pred CCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhc----CCccEEEeehhhhccCCC--------
Q 003887 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKS----GVYHVLIATDVAARGLDI-------- 536 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~----G~~~VLVaT~v~~~GlDI-------- 536 (789)
..|++||.+.++..+..++..|...--..+.+.|+.+ .+...+++|+. |...||++|+.+-+|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 4679999999999999999999764323455666553 35667888887 478999999999999999
Q ss_pred CC--ccEEEEEcCCCC-------------------------HHHHHHHHhhcCCCCCC--CeEEEEEEccccHHHHHHH
Q 003887 537 KS--IKSVVNFDIARD-------------------------MDMHVHRIGRTGRAGDK--DGTAYTLVTQKEARFAGEL 586 (789)
Q Consensus 537 ~~--v~~VI~~d~p~s-------------------------~~~y~QriGR~gR~G~~--~G~~i~l~~~~d~~~~~~l 586 (789)
|+ +++||+..+|.. ...+.|-+||.-|.-.. .|+.+++-..-...+-..+
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R~~~~yg~~~ 625 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGRIHWPYMESW 625 (636)
T ss_pred CCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCCCCchhHHHH
Confidence 33 899999777731 12235888999998755 5766655554333443333
No 145
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.67 E-value=6.4e-15 Score=180.72 Aligned_cols=123 Identities=18% Similarity=0.229 Sum_probs=87.7
Q ss_pred CCCcEEEEecccccHHHHHHHHHHcCC--ceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCC--ccEEEE
Q 003887 469 DDGDVLVFASKKTTVDEIESQLAQKGF--KAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKS--IKSVVN 544 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~--~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~--v~~VI~ 544 (789)
..+++|||++++...+.++..|..... ...++.-+++...|..+++.|+.+.-.||++|..+.+|+|+|+ +++||+
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 357999999999999999999976422 1222222343345788999999988899999999999999998 588888
Q ss_pred EcCCC----C--------------------------HHHHHHHHhhcCCCCCCCeEEEEEEcc-ccHHHHHHHHHHHH
Q 003887 545 FDIAR----D--------------------------MDMHVHRIGRTGRAGDKDGTAYTLVTQ-KEARFAGELVNSLI 591 (789)
Q Consensus 545 ~d~p~----s--------------------------~~~y~QriGR~gR~G~~~G~~i~l~~~-~d~~~~~~l~~~L~ 591 (789)
..+|. + ...+.|.+||.-|..+..|.++++-.. ....+-+.+++.|-
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~sLP 908 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLESLP 908 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHhCC
Confidence 77654 1 122259999999998555654444333 24556666666663
No 146
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.66 E-value=1.6e-15 Score=165.15 Aligned_cols=277 Identities=22% Similarity=0.304 Sum_probs=183.5
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHH
Q 003887 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (789)
Q Consensus 263 rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~ 342 (789)
+-++-++||.||||.- +|+++.. ....++.-|.|-||.++++.+... ++.|.+++|.......-
T Consensus 192 kIi~H~GPTNSGKTy~----ALqrl~~--------aksGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~~ 255 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYR----ALQRLKS--------AKSGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVLD 255 (700)
T ss_pred eEEEEeCCCCCchhHH----HHHHHhh--------hccceecchHHHHHHHHHHHhhhc----CCCccccccceeeecCC
Confidence 3466789999999965 5666532 344799999999999999888877 88888888865443221
Q ss_pred HHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHH-HHHhhcCCCceEEEEeccCcHHHHHHH
Q 003887 343 KELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIR-SIVGQIRPDRQTLLFSATMPRKVEKLA 421 (789)
Q Consensus 343 ~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~-~il~~~~~~~q~ll~SATl~~~v~~l~ 421 (789)
. ...+..+-||.++.. .-..+++.||||++.|.+...+..+. .++.......++.+ -+.+..+.
T Consensus 256 ~--~~~a~hvScTVEM~s--------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG-----epsvldlV 320 (700)
T KOG0953|consen 256 N--GNPAQHVSCTVEMVS--------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG-----EPSVLDLV 320 (700)
T ss_pred C--CCcccceEEEEEEee--------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC-----CchHHHHH
Confidence 1 112567777754331 13468999999999998866554444 34443333333332 23455566
Q ss_pred HHHhCCCeEEeeccccCccccceE-EEEecCCCcchHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCc-eee
Q 003887 422 REILSDPVRVTVGEVGMANEDITQ-VVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFK-AAA 499 (789)
Q Consensus 422 ~~~l~~p~~i~i~~~~~~~~~i~q-~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~-v~~ 499 (789)
+.++... .+.++. .+..+ ..-.-...++..|... ..|.+|| |-++...-.+...+.+.+.. +++
T Consensus 321 ~~i~k~T-----------Gd~vev~~YeRl-~pL~v~~~~~~sl~nl-k~GDCvV-~FSkk~I~~~k~kIE~~g~~k~aV 386 (700)
T KOG0953|consen 321 RKILKMT-----------GDDVEVREYERL-SPLVVEETALGSLSNL-KPGDCVV-AFSKKDIFTVKKKIEKAGNHKCAV 386 (700)
T ss_pred HHHHhhc-----------CCeeEEEeeccc-CcceehhhhhhhhccC-CCCCeEE-EeehhhHHHHHHHHHHhcCcceEE
Confidence 6665421 011111 11111 1111112344444444 3344543 55677888888889888766 999
Q ss_pred ccCCCCHHHHHHHHHHhhc--CCccEEEeehhhhccCCCCCccEEEEEcCC---------CCHHHHHHHHhhcCCCCCC-
Q 003887 500 LHGDKDQASRMEILQKFKS--GVYHVLIATDVAARGLDIKSIKSVVNFDIA---------RDMDMHVHRIGRTGRAGDK- 567 (789)
Q Consensus 500 lhg~~~~~eR~~~l~~F~~--G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p---------~s~~~y~QriGR~gR~G~~- 567 (789)
|+|++++..|..--..|++ +.++||||||++++|||+ +++.||+|++- -......|..||+||.|.+
T Consensus 387 IYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~ 465 (700)
T KOG0953|consen 387 IYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKY 465 (700)
T ss_pred EecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCC
Confidence 9999999999999999987 899999999999999999 79999998864 3567778999999999832
Q ss_pred -CeEEEEEEccccHHHHHHH
Q 003887 568 -DGTAYTLVTQKEARFAGEL 586 (789)
Q Consensus 568 -~G~~i~l~~~~d~~~~~~l 586 (789)
.|.+.+|.. +|...+.++
T Consensus 466 ~~G~vTtl~~-eDL~~L~~~ 484 (700)
T KOG0953|consen 466 PQGEVTTLHS-EDLKLLKRI 484 (700)
T ss_pred cCceEEEeeH-hhHHHHHHH
Confidence 455555543 444444433
No 147
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.65 E-value=3.5e-16 Score=133.69 Aligned_cols=78 Identities=44% Similarity=0.695 Sum_probs=75.7
Q ss_pred HHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCC
Q 003887 488 SQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG 565 (789)
Q Consensus 488 ~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G 565 (789)
++|+..++.+..+||++++.+|..+++.|+++...|||||+++++|+|+|.+++||+|++|+++..|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 468889999999999999999999999999999999999999999999999999999999999999999999999986
No 148
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.65 E-value=6e-15 Score=172.18 Aligned_cols=274 Identities=19% Similarity=0.191 Sum_probs=174.1
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003887 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (789)
Q Consensus 247 ~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~ 326 (789)
.|++.|.-+. +.-.+..|+.+.||.|||+++.+|+....+ .|..|-||+++..||.+-++++..+...+|
T Consensus 76 r~ydvQlig~--l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL--------~G~~VhVvT~NdyLA~RD~e~m~pvy~~LG 145 (870)
T CHL00122 76 RHFDVQLIGG--LVLNDGKIAEMKTGEGKTLVATLPAYLNAL--------TGKGVHIVTVNDYLAKRDQEWMGQIYRFLG 145 (870)
T ss_pred CCCchHhhhh--HhhcCCccccccCCCCchHHHHHHHHHHHh--------cCCceEEEeCCHHHHHHHHHHHHHHHHHcC
Confidence 3666666554 444566899999999999999999865443 255689999999999999999999999999
Q ss_pred cEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHH-HHHhh------ccccccceeEEEEcccchhc-cCC----------
Q 003887 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLI-DMLKM------KALTMSRVTYLVLDEADRMF-DLG---------- 388 (789)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~-~~l~~------~~~~l~~i~~lVlDEah~m~-~~~---------- 388 (789)
+.|.++.++.+..+... .-.|||+.+|..-|- +.|+. .......+.++||||+|.|+ |..
T Consensus 146 Lsvg~i~~~~~~~err~--aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiISg~~ 223 (870)
T CHL00122 146 LTVGLIQEGMSSEERKK--NYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQS 223 (870)
T ss_pred CceeeeCCCCChHHHHH--hcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceeccCCC
Confidence 99999988777654322 234899999987552 22322 12235668999999999763 100
Q ss_pred -----ChHHHHHHHhhcCCC------------------------------------------------------------
Q 003887 389 -----FEPQIRSIVGQIRPD------------------------------------------------------------ 403 (789)
Q Consensus 389 -----f~~~i~~il~~~~~~------------------------------------------------------------ 403 (789)
....+..+...+..+
T Consensus 224 ~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dYiV 303 (870)
T CHL00122 224 KTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYIV 303 (870)
T ss_pred ccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 000111111111100
Q ss_pred --------------------------------------------------------ceEEEEeccCcHHHHHHHHHHhCC
Q 003887 404 --------------------------------------------------------RQTLLFSATMPRKVEKLAREILSD 427 (789)
Q Consensus 404 --------------------------------------------------------~q~ll~SATl~~~v~~l~~~~l~~ 427 (789)
..+.+||.|......++ ..+++-
T Consensus 304 ~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef-~~iY~l 382 (870)
T CHL00122 304 RNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEF-EKIYNL 382 (870)
T ss_pred ECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHH-HHHhCC
Confidence 13444555543322222 222232
Q ss_pred CeEEeeccccCccccceEEEEecCCCcchHHHHHHhcCCCC-CCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCH
Q 003887 428 PVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQ 506 (789)
Q Consensus 428 p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~ 506 (789)
.+.+.....+....+.. ..++.....|+..+++.+.... .+.+|||-|.+.+..+.|+..|.+.+++..+|+..-.+
T Consensus 383 ~vv~IPtnkp~~R~d~~--d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~ 460 (870)
T CHL00122 383 EVVCIPTHRPMLRKDLP--DLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPEN 460 (870)
T ss_pred CEEECCCCCCccceeCC--CeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCcc
Confidence 22222111111111111 1223345567777777665443 34599999999999999999999999999999986433
Q ss_pred HHHH-HHHHHhhcC-CccEEEeehhhhccCCCC
Q 003887 507 ASRM-EILQKFKSG-VYHVLIATDVAARGLDIK 537 (789)
Q Consensus 507 ~eR~-~~l~~F~~G-~~~VLVaT~v~~~GlDI~ 537 (789)
.+++ .++.. .| .-.|.|||++|+||.||.
T Consensus 461 ~~~EA~IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 461 VRRESEIVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred chhHHHHHHh--cCCCCcEEEeccccCCCcCee
Confidence 2333 33332 44 356999999999999975
No 149
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.65 E-value=4.7e-15 Score=139.63 Aligned_cols=144 Identities=40% Similarity=0.548 Sum_probs=112.9
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHH
Q 003887 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (789)
Q Consensus 263 rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~ 342 (789)
+++++.++||+|||.+++..+...... ...+++||++|++.|+.|+.+.+..+... .+.+..+.+........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS------LKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQE 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHH
Confidence 468999999999999977777665533 23567999999999999999999988765 67788888877666665
Q ss_pred HHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEeccC
Q 003887 343 KELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (789)
Q Consensus 343 ~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl 413 (789)
.......+|+|+|++.+...+.........+++|||||+|.+....+...............+++++|||+
T Consensus 74 ~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 74 KLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 55567899999999999888766555566789999999999887655544333344446678899999996
No 150
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.64 E-value=7.8e-15 Score=181.27 Aligned_cols=325 Identities=22% Similarity=0.267 Sum_probs=209.1
Q ss_pred CCCcHHHHHHHHHHH-----cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHH
Q 003887 246 EKPTSIQCQALPIIL-----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK 320 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il-----~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k 320 (789)
..++++|.+++.|+. .+.+.+++.+||.|||++.+.. +.+++.... ...+.+||+||+ +++.+|.+++.+
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~-l~~~~~~~~---~~~~~~liv~p~-s~~~nw~~e~~k 411 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIAL-LLSLLESIK---VYLGPALIVVPA-SLLSNWKREFEK 411 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHH-HHhhhhccc---CCCCCeEEEecH-HHHHHHHHHHhh
Confidence 568899999999966 2578899999999999985444 444333221 113568999998 666789999999
Q ss_pred HhhhcCcEEEEEEcCCCh----HHHHHHHhcC-----CcEEEeCHHHHHHHH-hhccccccceeEEEEcccchhccCCCh
Q 003887 321 FAKSHGIRVSAVYGGMSK----LDQFKELKAG-----CEIVIATPGRLIDML-KMKALTMSRVTYLVLDEADRMFDLGFE 390 (789)
Q Consensus 321 ~~~~~~i~v~~~~gg~~~----~~~~~~l~~~-----~dIiV~Tp~~L~~~l-~~~~~~l~~i~~lVlDEah~m~~~~f~ 390 (789)
|+..... +...+|.... ......+... .+|+++|++.|.... ....+.-..+.++|+||||++.+..-.
T Consensus 412 ~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~s~ 490 (866)
T COG0553 412 FAPDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQSS 490 (866)
T ss_pred hCccccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhhhH
Confidence 9874433 5666665541 4444444432 799999999998742 122344557899999999997543211
Q ss_pred HHHHHHHhhcCCCceEEEEeccC-cHHHHHHHH-----------------------------------------------
Q 003887 391 PQIRSIVGQIRPDRQTLLFSATM-PRKVEKLAR----------------------------------------------- 422 (789)
Q Consensus 391 ~~i~~il~~~~~~~q~ll~SATl-~~~v~~l~~----------------------------------------------- 422 (789)
....+..++...+ +++|.|+ .+.+.++..
T Consensus 491 --~~~~l~~~~~~~~-~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 567 (866)
T COG0553 491 --EGKALQFLKALNR-LDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRK 567 (866)
T ss_pred --HHHHHHHHhhcce-eeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHH
Confidence 0000111111111 2222222 111111000
Q ss_pred --------------------------------------------------------------------------------
Q 003887 423 -------------------------------------------------------------------------------- 422 (789)
Q Consensus 423 -------------------------------------------------------------------------------- 422 (789)
T Consensus 568 ~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 647 (866)
T COG0553 568 LLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTR 647 (866)
T ss_pred HHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHH
Confidence
Q ss_pred --HHhCCCeEEeec-cccCccc--------cceEEEEecCCCc-chHHHHHHhc-CCCCCCC---cEEEEecccccHHHH
Q 003887 423 --EILSDPVRVTVG-EVGMANE--------DITQVVHVIPSDA-EKLPWLLEKL-PGMIDDG---DVLVFASKKTTVDEI 486 (789)
Q Consensus 423 --~~l~~p~~i~i~-~~~~~~~--------~i~q~~~~~~~~~-~k~~~L~~~L-~~~~~~~---kvLVF~~s~~~a~~l 486 (789)
.+|.+|..+... ....... ............. .|...+.++| ......+ ++|||++.....+.+
T Consensus 648 lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il 727 (866)
T COG0553 648 LRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLL 727 (866)
T ss_pred HHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHH
Confidence 000001000000 0000000 0000000000011 5666776777 4444443 899999999999999
Q ss_pred HHHHHHcCCceeeccCCCCHHHHHHHHHHhhcC--CccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCC
Q 003887 487 ESQLAQKGFKAAALHGDKDQASRMEILQKFKSG--VYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRA 564 (789)
Q Consensus 487 ~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G--~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~ 564 (789)
..+|...++.+..++|.++...|...++.|.++ ...+|++|.+++.|+|+..+++||+||++||+....|++.|++|.
T Consensus 728 ~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~Ri 807 (866)
T COG0553 728 EDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRI 807 (866)
T ss_pred HHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHh
Confidence 999999999999999999999999999999986 556777889999999999999999999999999999999999999
Q ss_pred CCCCe-EEEEEEcccc
Q 003887 565 GDKDG-TAYTLVTQKE 579 (789)
Q Consensus 565 G~~~G-~~i~l~~~~d 579 (789)
|++.. .+|.|++...
T Consensus 808 gQ~~~v~v~r~i~~~t 823 (866)
T COG0553 808 GQKRPVKVYRLITRGT 823 (866)
T ss_pred cCcceeEEEEeecCCc
Confidence 96544 4556666553
No 151
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.59 E-value=1.6e-13 Score=160.12 Aligned_cols=127 Identities=22% Similarity=0.262 Sum_probs=96.8
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003887 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (789)
Q Consensus 247 ~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~ 326 (789)
.|+++|.-+- +.-.+.-|..+.||-|||+++.+|++...+. |..|-||+++.-||..-++++..+...+|
T Consensus 85 r~ydVQliGg--l~Lh~G~IAEM~TGEGKTL~atlpaylnAL~--------GkgVhVVTvNdYLA~RDae~m~~vy~~LG 154 (939)
T PRK12902 85 RHFDVQLIGG--MVLHEGQIAEMKTGEGKTLVATLPSYLNALT--------GKGVHVVTVNDYLARRDAEWMGQVHRFLG 154 (939)
T ss_pred CcchhHHHhh--hhhcCCceeeecCCCChhHHHHHHHHHHhhc--------CCCeEEEeCCHHHHHhHHHHHHHHHHHhC
Confidence 4555555544 4445567899999999999999998876543 55689999999999999999999999999
Q ss_pred cEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHH-----HHHHhh--ccccccceeEEEEcccchhc
Q 003887 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-----IDMLKM--KALTMSRVTYLVLDEADRMF 385 (789)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L-----~~~l~~--~~~~l~~i~~lVlDEah~m~ 385 (789)
+.|.++.++....+. ...-.|||+++|...| .+.+.. .......+.++||||+|.|+
T Consensus 155 Ltvg~i~~~~~~~er--r~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 155 LSVGLIQQDMSPEER--KKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred CeEEEECCCCChHHH--HHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 999999887655433 2334699999999887 343322 22345678999999999763
No 152
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.57 E-value=4e-14 Score=153.73 Aligned_cols=348 Identities=13% Similarity=0.080 Sum_probs=229.9
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHH
Q 003887 238 HAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLE 317 (789)
Q Consensus 238 ~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~ 317 (789)
..+.++.-.....+|.++|..+-+|+++++.-.|-+||.++|.+..+..++..+ ....+++.|+.++++.-.+.
T Consensus 277 ~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~------~s~~~~~~~~~~~~~~~~~~ 350 (1034)
T KOG4150|consen 277 SLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCH------ATNSLLPSEMVEHLRNGSKG 350 (1034)
T ss_pred HHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCc------ccceecchhHHHHhhccCCc
Confidence 344455556678999999999999999999999999999999988887766543 23368889999998653322
Q ss_pred HHHHh---hhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhcccc----ccceeEEEEcccchhccCC--
Q 003887 318 TKKFA---KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALT----MSRVTYLVLDEADRMFDLG-- 388 (789)
Q Consensus 318 ~~k~~---~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~----l~~i~~lVlDEah~m~~~~-- 388 (789)
+.-.. +...--++-.+.+.+......-.+.+..++++.|......+..+... +-...++++||+|.++-..
T Consensus 351 ~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 430 (1034)
T KOG4150|consen 351 QVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKA 430 (1034)
T ss_pred eEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhh
Confidence 11111 01122344556666666666666778999999999888766444332 2334678999999655321
Q ss_pred -ChHHHHHHHhhc-----CCCceEEEEeccCcHHHHHHHHHHhC-CC-eEEeeccccCccccceEEEEecCC-----C--
Q 003887 389 -FEPQIRSIVGQI-----RPDRQTLLFSATMPRKVEKLAREILS-DP-VRVTVGEVGMANEDITQVVHVIPS-----D-- 453 (789)
Q Consensus 389 -f~~~i~~il~~~-----~~~~q~ll~SATl~~~v~~l~~~~l~-~p-~~i~i~~~~~~~~~i~q~~~~~~~-----~-- 453 (789)
...+++.++..+ ....|++-.+||+...++- ...+.+ +- ..+.+.. ....-...+.+-+. .
T Consensus 431 ~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~-~~~~~~~~E~~Li~~DG---SPs~~K~~V~WNP~~~P~~~~~ 506 (1034)
T KOG4150|consen 431 LAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRL-RSELANLSELELVTIDG---SPSSEKLFVLWNPSAPPTSKSE 506 (1034)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHH-HHHhcCCcceEEEEecC---CCCccceEEEeCCCCCCcchhh
Confidence 123344444333 2467889999998766543 333333 22 2222211 11122233333221 1
Q ss_pred -cchHHHHHHhcCCCCC-CCcEEEEecccccHHHHHHHHHH----cCC----ceeeccCCCCHHHHHHHHHHhhcCCccE
Q 003887 454 -AEKLPWLLEKLPGMID-DGDVLVFASKKTTVDEIESQLAQ----KGF----KAAALHGDKDQASRMEILQKFKSGVYHV 523 (789)
Q Consensus 454 -~~k~~~L~~~L~~~~~-~~kvLVF~~s~~~a~~l~~~L~~----~g~----~v~~lhg~~~~~eR~~~l~~F~~G~~~V 523 (789)
..+......++.++.. +-++|-||+.+..|+.+....++ .+. .+..+.|+....+|.++....-.|+..-
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~g 586 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCG 586 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeE
Confidence 1222222223333222 34899999999999877654433 221 3566789999999999999999999999
Q ss_pred EEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEE--ccccHHHHHHHHHHHHHcCCC
Q 003887 524 LIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLV--TQKEARFAGELVNSLIAAGQN 596 (789)
Q Consensus 524 LVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~--~~~d~~~~~~l~~~L~~~~~~ 596 (789)
+|+|++++-|+||-+++.|++.++|.++..+.|..||+||.. +...++++. .+-|.-++..-...+...+.+
T Consensus 587 iIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRN-k~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~E 660 (1034)
T KOG4150|consen 587 IIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRN-KPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEE 660 (1034)
T ss_pred EEecchhhhccccccceeEEEccCchhHHHHHHHhccccccC-CCceEEEEEeccchhhHhhcCcHHHhCCCcce
Confidence 999999999999999999999999999999999999999997 666655544 344555554444444444433
No 153
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.56 E-value=1.9e-14 Score=143.15 Aligned_cols=153 Identities=23% Similarity=0.183 Sum_probs=101.9
Q ss_pred CCcHHHHHHHHHHHc-------CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHH
Q 003887 247 KPTSIQCQALPIILS-------GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETK 319 (789)
Q Consensus 247 ~ptpiQ~~ai~~il~-------grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~ 319 (789)
+|+++|.+++..+.. .+.+++.++||+|||.+++..+.... . ++||+||+..|+.|+.+.+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~-~----------~~l~~~p~~~l~~Q~~~~~~ 71 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA-R----------KVLIVAPNISLLEQWYDEFD 71 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-C----------EEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-c----------ceeEecCHHHHHHHHHHHHH
Confidence 589999999999884 58999999999999998665444443 2 69999999999999999997
Q ss_pred HHhhhcCcEEEE-----------EEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhc-----------cccccceeEEE
Q 003887 320 KFAKSHGIRVSA-----------VYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK-----------ALTMSRVTYLV 377 (789)
Q Consensus 320 k~~~~~~i~v~~-----------~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~-----------~~~l~~i~~lV 377 (789)
.+.......... ..................+|+++|...|....... ......+.+||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI 151 (184)
T PF04851_consen 72 DFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVI 151 (184)
T ss_dssp HHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEE
T ss_pred HhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEE
Confidence 765421111100 00111111122222346899999999998876531 12345688999
Q ss_pred EcccchhccCCChHHHHHHHhhcCCCceEEEEeccCcH
Q 003887 378 LDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPR 415 (789)
Q Consensus 378 lDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~ 415 (789)
+||||++.... ....++. .+...+|+||||+++
T Consensus 152 ~DEaH~~~~~~---~~~~i~~--~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 152 IDEAHHYPSDS---SYREIIE--FKAAFILGLTATPFR 184 (184)
T ss_dssp EETGGCTHHHH---HHHHHHH--SSCCEEEEEESS-S-
T ss_pred EehhhhcCCHH---HHHHHHc--CCCCeEEEEEeCccC
Confidence 99999865432 1344444 557779999999864
No 154
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.53 E-value=9.7e-13 Score=157.45 Aligned_cols=118 Identities=22% Similarity=0.325 Sum_probs=84.6
Q ss_pred CCcEEEEecccccHHHHHHHHHHcCCc-eeeccCCCCHHHHHHHHHHhhcCCc-cEEEeehhhhccCCCCC--ccEEEEE
Q 003887 470 DGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKDQASRMEILQKFKSGVY-HVLIATDVAARGLDIKS--IKSVVNF 545 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~g~~-v~~lhg~~~~~eR~~~l~~F~~G~~-~VLVaT~v~~~GlDI~~--v~~VI~~ 545 (789)
.+++|||++++..+..+.+.|...... ....+|..+ +...++.|+.+.- -+||+|..+.+|+|+++ ++.||+.
T Consensus 479 ~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~ 555 (654)
T COG1199 479 PGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIV 555 (654)
T ss_pred CCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEE
Confidence 559999999999999999999876552 344555444 4578888887654 89999999999999998 5788887
Q ss_pred cCCCC------------------------------HHHHHHHHhhcCCCCCCCeEEEEEEccccHH-HHHHHHHHH
Q 003887 546 DIARD------------------------------MDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR-FAGELVNSL 590 (789)
Q Consensus 546 d~p~s------------------------------~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~-~~~~l~~~L 590 (789)
..|.- .....|.+||+-|.-+..|.++++-..-... +-..+.+.|
T Consensus 556 ~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~~~~~y~~~l~~~l 631 (654)
T COG1199 556 GLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRYATKRYGKLLLDSL 631 (654)
T ss_pred ecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccchhhhHHHHHHHhC
Confidence 77641 2334699999999764456666554433332 333444444
No 155
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.49 E-value=1e-13 Score=118.67 Aligned_cols=81 Identities=46% Similarity=0.724 Sum_probs=77.6
Q ss_pred HHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCC
Q 003887 485 EIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRA 564 (789)
Q Consensus 485 ~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~ 564 (789)
.++..|...++.+..+||.++..+|..++..|+++...|||+|+++++|+|++.+++||++++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 003887 565 G 565 (789)
Q Consensus 565 G 565 (789)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 156
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.48 E-value=1.6e-11 Score=146.53 Aligned_cols=118 Identities=22% Similarity=0.316 Sum_probs=81.9
Q ss_pred CCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhc----CCccEEEeehhhhccCCCCC--ccEEE
Q 003887 470 DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKS----GVYHVLIATDVAARGLDIKS--IKSVV 543 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~----G~~~VLVaT~v~~~GlDI~~--v~~VI 543 (789)
.+++|||++++..++.++..|....-....++|.. .|..+++.|++ +...||++|..+.+|||+|+ +++||
T Consensus 534 ~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vI 610 (697)
T PRK11747 534 HKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVI 610 (697)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEEE
Confidence 45799999999999999999975322234456643 46778877764 67789999999999999997 78999
Q ss_pred EEcCCC----CH--------------------------HHHHHHHhhcCCCCCCCeEEEEEEccc-cHHHHHHHHHHH
Q 003887 544 NFDIAR----DM--------------------------DMHVHRIGRTGRAGDKDGTAYTLVTQK-EARFAGELVNSL 590 (789)
Q Consensus 544 ~~d~p~----s~--------------------------~~y~QriGR~gR~G~~~G~~i~l~~~~-d~~~~~~l~~~L 590 (789)
+..+|. ++ ..+.|.+||.-|.....|.++++-..- ...+-+.+++.|
T Consensus 611 I~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R~~~~~Yg~~~l~sL 688 (697)
T PRK11747 611 ITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRRLLTKRYGKRLLDAL 688 (697)
T ss_pred EEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcccccchhHHHHHHHhC
Confidence 877663 22 112488999999874456544433332 344555555554
No 157
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.47 E-value=6.6e-13 Score=155.69 Aligned_cols=313 Identities=18% Similarity=0.217 Sum_probs=207.3
Q ss_pred CCcHHHHHHHHHHHcC-CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHH-HHhhh
Q 003887 247 KPTSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETK-KFAKS 324 (789)
Q Consensus 247 ~ptpiQ~~ai~~il~g-rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~-k~~~~ 324 (789)
...|+|.+.++.+.+. +++++++|+|||||+++-++++. .....++++++|..+.+...+..+. +|...
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~---------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~ 1213 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR---------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL 1213 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC---------CccceEEEEecchHHHHHHHHHHHHHhhccc
Confidence 3479999999998755 67899999999999998777665 1345679999999999987776665 45555
Q ss_pred cCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCC------ChHHHHHHHh
Q 003887 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG------FEPQIRSIVG 398 (789)
Q Consensus 325 ~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~------f~~~i~~il~ 398 (789)
.|..++.+.|..+... .+....+|+|+||+++-.+ . ..+.+++.|+||+|.+.... ... ++.|-.
T Consensus 1214 ~G~~~~~l~ge~s~~l---kl~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~ 1284 (1674)
T KOG0951|consen 1214 LGLRIVKLTGETSLDL---KLLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIAS 1284 (1674)
T ss_pred cCceEEecCCccccch---HHhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHH
Confidence 6888888877665543 2344589999999998655 2 67789999999999887321 112 566666
Q ss_pred hcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCc---chHHH---HHHhcC-CCCCCC
Q 003887 399 QIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDA---EKLPW---LLEKLP-GMIDDG 471 (789)
Q Consensus 399 ~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~---~k~~~---L~~~L~-~~~~~~ 471 (789)
.+-+..+++.+|..+.+. .+++ .+ .+..+..........+....+..+.... .-+.+ .+..+. ......
T Consensus 1285 q~~k~ir~v~ls~~lana-~d~i--g~-s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k 1360 (1674)
T KOG0951|consen 1285 QLEKKIRVVALSSSLANA-RDLI--GA-SSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRK 1360 (1674)
T ss_pred HHHhheeEEEeehhhccc-hhhc--cc-cccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCC
Confidence 667778899999887643 3331 11 1111111112222222232333332211 11111 111121 122456
Q ss_pred cEEEEecccccHHHHHHHHHHc----------------------CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehh
Q 003887 472 DVLVFASKKTTVDEIESQLAQK----------------------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDV 529 (789)
Q Consensus 472 kvLVF~~s~~~a~~l~~~L~~~----------------------g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v 529 (789)
+.+||++++++|..++..|-.. ..+..+=|.+++..+...+-..|..|.+.|+|...-
T Consensus 1361 ~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~ 1440 (1674)
T KOG0951|consen 1361 PAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD 1440 (1674)
T ss_pred CeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc
Confidence 8999999999997776554321 233334489999999999999999999999998866
Q ss_pred hhccCCCCCccEEEE----EcC------CCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHH
Q 003887 530 AARGLDIKSIKSVVN----FDI------ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGEL 586 (789)
Q Consensus 530 ~~~GlDI~~v~~VI~----~d~------p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l 586 (789)
..|+-...--+||. ||- +-.+...+|++|++.|+ |.|+++....++.++++.
T Consensus 1441 -~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~----~k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1441 -CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGA----GKCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred -cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcCC----ccEEEEecCchHHHHHHh
Confidence 77777754333332 442 34578889999999985 578888877777766644
No 158
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.45 E-value=2.3e-11 Score=146.22 Aligned_cols=74 Identities=22% Similarity=0.201 Sum_probs=62.0
Q ss_pred CCCCCcHHHHHHHHHHH----cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHH
Q 003887 244 GYEKPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETK 319 (789)
Q Consensus 244 g~~~ptpiQ~~ai~~il----~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~ 319 (789)
.|..++|.|.+.+..+. .+.++|+.+|||+|||++.|.|+|.++...+ ..+++++++.|..-..|+.++++
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~-----~~~kIiy~sRThsQl~q~i~Elk 81 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP-----EVRKIIYASRTHSQLEQATEELR 81 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc-----ccccEEEEcccchHHHHHHHHHH
Confidence 36667999999887765 6789999999999999999999999875432 24679999999999999999999
Q ss_pred HHh
Q 003887 320 KFA 322 (789)
Q Consensus 320 k~~ 322 (789)
+..
T Consensus 82 ~~~ 84 (705)
T TIGR00604 82 KLM 84 (705)
T ss_pred hhh
Confidence 853
No 159
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.44 E-value=7.5e-12 Score=148.27 Aligned_cols=309 Identities=18% Similarity=0.171 Sum_probs=179.1
Q ss_pred CCcHHHHHHHHHHHcC--------CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHH
Q 003887 247 KPTSIQCQALPIILSG--------RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLET 318 (789)
Q Consensus 247 ~ptpiQ~~ai~~il~g--------rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~ 318 (789)
.-..+|-.|+..+..- -=+|-.|.||+|||++ -.=++..+... ..|.+..|..-.|.|..|.-.++
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~a-NARImyaLsd~-----~~g~RfsiALGLRTLTLQTGda~ 481 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLA-NARAMYALRDD-----KQGARFAIALGLRSLTLQTGHAL 481 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHH-HHHHHHHhCCC-----CCCceEEEEccccceeccchHHH
Confidence 3457999999887742 1255679999999986 33344444221 34667788888888888888888
Q ss_pred HHHhhhcCcEEEEEEcCCChHHHHH-------------------------------------------HHh--------c
Q 003887 319 KKFAKSHGIRVSAVYGGMSKLDQFK-------------------------------------------ELK--------A 347 (789)
Q Consensus 319 ~k~~~~~~i~v~~~~gg~~~~~~~~-------------------------------------------~l~--------~ 347 (789)
++-+...+-...+++|+....+... .+. -
T Consensus 482 r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll 561 (1110)
T TIGR02562 482 KTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLL 561 (1110)
T ss_pred HHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhh
Confidence 8766544445555666543222110 000 0
Q ss_pred CCcEEEeCHHHHHHHHhh---cccccc----ceeEEEEcccchhccCCChHHHHHHHhhc-CCCceEEEEeccCcHHHHH
Q 003887 348 GCEIVIATPGRLIDMLKM---KALTMS----RVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPDRQTLLFSATMPRKVEK 419 (789)
Q Consensus 348 ~~dIiV~Tp~~L~~~l~~---~~~~l~----~i~~lVlDEah~m~~~~f~~~i~~il~~~-~~~~q~ll~SATl~~~v~~ 419 (789)
...|+|||+..++..... ....+. .-+.|||||+|.+-...+ ..+..++.-+ .....+++||||+|+.+..
T Consensus 562 ~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~-~~L~rlL~w~~~lG~~VlLmSATLP~~l~~ 640 (1110)
T TIGR02562 562 AAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDL-PALLRLVQLAGLLGSRVLLSSATLPPALVK 640 (1110)
T ss_pred cCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHH-HHHHHHHHHHHHcCCCEEEEeCCCCHHHHH
Confidence 178999999999887632 111111 135799999997322111 1222222211 2357799999999987654
Q ss_pred H-HHHH----------hCC---CeEEeeccc---cCc--------------------------cccceEE--EEecCCCc
Q 003887 420 L-AREI----------LSD---PVRVTVGEV---GMA--------------------------NEDITQV--VHVIPSDA 454 (789)
Q Consensus 420 l-~~~~----------l~~---p~~i~i~~~---~~~--------------------------~~~i~q~--~~~~~~~~ 454 (789)
. ...| .+. +..|...-. ... ...+... +..++...
T Consensus 641 ~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~ 720 (1110)
T TIGR02562 641 TLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLP 720 (1110)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCcc
Confidence 3 3333 121 222211110 000 0001111 11111111
Q ss_pred ----chHHHHHHhcCC-----------CCC-CC-c---EEEEecccccHHHHHHHHHHc------CCceeeccCCCCHHH
Q 003887 455 ----EKLPWLLEKLPG-----------MID-DG-D---VLVFASKKTTVDEIESQLAQK------GFKAAALHGDKDQAS 508 (789)
Q Consensus 455 ----~k~~~L~~~L~~-----------~~~-~~-k---vLVF~~s~~~a~~l~~~L~~~------g~~v~~lhg~~~~~e 508 (789)
.....+.+.+.+ ... .+ + -||-++++..+..++..|... .+.+.++|+......
T Consensus 721 ~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~ 800 (1110)
T TIGR02562 721 RENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLL 800 (1110)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHH
Confidence 111122222110 001 12 2 277788888888888888654 345888999998777
Q ss_pred HHHHHHHh----------------------hc----CCccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcC
Q 003887 509 RMEILQKF----------------------KS----GVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTG 562 (789)
Q Consensus 509 R~~~l~~F----------------------~~----G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~g 562 (789)
|..+.+.. .+ +...|+|+|.+++.|+|+. .+.+| --|.++...+|+.||+.
T Consensus 801 Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~d-fd~~~--~~~~~~~sliQ~aGR~~ 877 (1110)
T TIGR02562 801 RSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHD-YDWAI--ADPSSMRSIIQLAGRVN 877 (1110)
T ss_pred HHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEeccc-CCeee--eccCcHHHHHHHhhccc
Confidence 77655443 12 4667999999999999993 34443 44677999999999999
Q ss_pred CCC
Q 003887 563 RAG 565 (789)
Q Consensus 563 R~G 565 (789)
|.+
T Consensus 878 R~~ 880 (1110)
T TIGR02562 878 RHR 880 (1110)
T ss_pred ccc
Confidence 988
No 160
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.43 E-value=9.8e-12 Score=145.96 Aligned_cols=273 Identities=10% Similarity=0.124 Sum_probs=162.2
Q ss_pred CCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHH---HHHhc
Q 003887 271 TGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF---KELKA 347 (789)
Q Consensus 271 TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~---~~l~~ 347 (789)
+|||||.+|+-.+-..+ . .|..+|||+|...|+.|+.+.++..+. +..+..++++.+..+.. ..+..
T Consensus 169 ~GSGKTevyl~~i~~~l-~-------~Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~~ 238 (665)
T PRK14873 169 PGEDWARRLAAAAAATL-R-------AGRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAVLR 238 (665)
T ss_pred CCCcHHHHHHHHHHHHH-H-------cCCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHHhC
Confidence 59999999876655444 2 367799999999999999999887753 25688888888766544 34444
Q ss_pred C-CcEEEeCHHHHHHHHhhccccccceeEEEEcccchh--ccC-CChHHHH--HHHhhcCCCceEEEEeccCcHHHHHHH
Q 003887 348 G-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM--FDL-GFEPQIR--SIVGQIRPDRQTLLFSATMPRKVEKLA 421 (789)
Q Consensus 348 ~-~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m--~~~-~f~~~i~--~il~~~~~~~q~ll~SATl~~~v~~l~ 421 (789)
| ..|||+|-..+ ...+.++.+|||||-|.- .+. ......+ .++.....+..+|+.|||+.-+....+
T Consensus 239 G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~ 311 (665)
T PRK14873 239 GQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALV 311 (665)
T ss_pred CCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 5 78999995333 346889999999999932 221 1111222 222333457789999999875543332
Q ss_pred HHHhCCCeEEeecc--ccCccccceEEEEecC-----CCc----chHHHHHHhcCCCCCCCcEEEEecccccH-------
Q 003887 422 REILSDPVRVTVGE--VGMANEDITQVVHVIP-----SDA----EKLPWLLEKLPGMIDDGDVLVFASKKTTV------- 483 (789)
Q Consensus 422 ~~~l~~p~~i~i~~--~~~~~~~i~q~~~~~~-----~~~----~k~~~L~~~L~~~~~~~kvLVF~~s~~~a------- 483 (789)
.. +....+.... .....+.+ +.+..-. ... .-...+++.+.+.+..+++|||+|.+-.+
T Consensus 312 ~~--g~~~~~~~~~~~~~~~~P~v-~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~gqvll~lnRrGyap~l~C~~ 388 (665)
T PRK14873 312 ES--GWAHDLVAPRPVVRARAPRV-RALGDSGLALERDPAARAARLPSLAFRAARDALEHGPVLVQVPRRGYVPSLACAR 388 (665)
T ss_pred hc--CcceeeccccccccCCCCeE-EEEeCchhhhccccccccCccCHHHHHHHHHHHhcCcEEEEecCCCCCCeeEhhh
Confidence 21 1111111100 00111111 1111000 000 01134556666555566999999976554
Q ss_pred ----------------------------------------------------HHHHHHHHHc--CCceeeccCCCCHHHH
Q 003887 484 ----------------------------------------------------DEIESQLAQK--GFKAAALHGDKDQASR 509 (789)
Q Consensus 484 ----------------------------------------------------~~l~~~L~~~--g~~v~~lhg~~~~~eR 509 (789)
+++++.|.+. +.++..+. +
T Consensus 389 Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~d-------~ 461 (665)
T PRK14873 389 CRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTSG-------G 461 (665)
T ss_pred CcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEEC-------h
Confidence 2333333322 12233222 2
Q ss_pred HHHHHHhhcCCccEEEeeh----hhhccCCCCCccEEEEEcCCC------------CHHHHHHHHhhcCCCCCCCeEEEE
Q 003887 510 MEILQKFKSGVYHVLIATD----VAARGLDIKSIKSVVNFDIAR------------DMDMHVHRIGRTGRAGDKDGTAYT 573 (789)
Q Consensus 510 ~~~l~~F~~G~~~VLVaT~----v~~~GlDI~~v~~VI~~d~p~------------s~~~y~QriGR~gR~G~~~G~~i~ 573 (789)
+.+++.|. ++.+|||+|. +++ .+++.|+..|... ....+.|..||+||.. +.|.+++
T Consensus 462 d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~-~~G~V~i 534 (665)
T PRK14873 462 DQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRA-DGGQVVV 534 (665)
T ss_pred HHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCC-CCCEEEE
Confidence 35788886 5899999998 555 3667777766432 2344478889999976 6788887
Q ss_pred EEcc
Q 003887 574 LVTQ 577 (789)
Q Consensus 574 l~~~ 577 (789)
...+
T Consensus 535 q~~p 538 (665)
T PRK14873 535 VAES 538 (665)
T ss_pred EeCC
Confidence 6533
No 161
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.40 E-value=6.3e-12 Score=148.22 Aligned_cols=126 Identities=21% Similarity=0.260 Sum_probs=100.7
Q ss_pred CCcchHHHHHHhcCCCCC-CCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhh
Q 003887 452 SDAEKLPWLLEKLPGMID-DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530 (789)
Q Consensus 452 ~~~~k~~~L~~~L~~~~~-~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~ 530 (789)
....|+..+++.+..... +.+|||-+.+.+..+.|+..|...+++..+|+......+-+.+-+.=+ .-.|-|||++|
T Consensus 609 t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~--~GaVTIATNMA 686 (1112)
T PRK12901 609 TKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQ--PGTVTIATNMA 686 (1112)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCC--CCcEEEeccCc
Confidence 345677777777765543 459999999999999999999999999999987655444332222222 34699999999
Q ss_pred hccCCCC--------CccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccH
Q 003887 531 ARGLDIK--------SIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (789)
Q Consensus 531 ~~GlDI~--------~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~ 580 (789)
+||.||. +=-+||--..+.|.....|-.||+||.| .+|.+..|++-+|.
T Consensus 687 GRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQG-DPGsS~f~lSLEDd 743 (1112)
T PRK12901 687 GRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQG-DPGSSQFYVSLEDN 743 (1112)
T ss_pred CCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCC-CCCcceEEEEcccH
Confidence 9999998 4458998999999999999999999999 68999999987764
No 162
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.32 E-value=6.6e-12 Score=135.22 Aligned_cols=156 Identities=21% Similarity=0.222 Sum_probs=95.9
Q ss_pred HHHHHHHHHH-------------cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHH
Q 003887 251 IQCQALPIIL-------------SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLE 317 (789)
Q Consensus 251 iQ~~ai~~il-------------~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~ 317 (789)
+|.+++.+++ ..+.+|++.++|+|||++.+. ++.++....... ....+|||||. .+..||..+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~-~~~~l~~~~~~~--~~~~~LIv~P~-~l~~~W~~E 76 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIA-LISYLKNEFPQR--GEKKTLIVVPS-SLLSQWKEE 76 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHH-HHHHHHHCCTTS--S-S-EEEEE-T-TTHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhh-hhhhhhhccccc--cccceeEeecc-chhhhhhhh
Confidence 6889998874 236799999999999998544 444444332110 11248999999 777899999
Q ss_pred HHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHH---hhccccccceeEEEEcccchhccCCChHHHH
Q 003887 318 TKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDML---KMKALTMSRVTYLVLDEADRMFDLGFEPQIR 394 (789)
Q Consensus 318 ~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l---~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~ 394 (789)
+.+++....+++..+.+...............+|+|+|++.+.... ....+.-..+++|||||+|.+.+. .....
T Consensus 77 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~--~s~~~ 154 (299)
T PF00176_consen 77 IEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNK--DSKRY 154 (299)
T ss_dssp HHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTT--TSHHH
T ss_pred hccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccccc--ccccc
Confidence 9999865566766666654122222223345899999999998111 011122245999999999998543 33444
Q ss_pred HHHhhcCCCceEEEEeccC
Q 003887 395 SIVGQIRPDRQTLLFSATM 413 (789)
Q Consensus 395 ~il~~~~~~~q~ll~SATl 413 (789)
..+..+. ....+++|||+
T Consensus 155 ~~l~~l~-~~~~~lLSgTP 172 (299)
T PF00176_consen 155 KALRKLR-ARYRWLLSGTP 172 (299)
T ss_dssp HHHHCCC-ECEEEEE-SS-
T ss_pred ccccccc-cceEEeecccc
Confidence 5555565 56678899995
No 163
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.28 E-value=1.2e-10 Score=135.07 Aligned_cols=286 Identities=16% Similarity=0.213 Sum_probs=177.2
Q ss_pred EEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHH
Q 003887 265 IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE 344 (789)
Q Consensus 265 vl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~ 344 (789)
.++-+|+|+|||.+ ++..|...++. ...++|+|...+.|+.++...++.. ++.-...|........ .
T Consensus 52 ~vVRSpMGTGKTta-Li~wLk~~l~~------~~~~VLvVShRrSL~~sL~~rf~~~----~l~gFv~Y~d~~~~~i-~- 118 (824)
T PF02399_consen 52 LVVRSPMGTGKTTA-LIRWLKDALKN------PDKSVLVVSHRRSLTKSLAERFKKA----GLSGFVNYLDSDDYII-D- 118 (824)
T ss_pred EEEECCCCCCcHHH-HHHHHHHhccC------CCCeEEEEEhHHHHHHHHHHHHhhc----CCCcceeeeccccccc-c-
Confidence 56789999999987 34444444332 2566999999999999998777755 2211112222211100 0
Q ss_pred HhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHH------H-HHhhcCCCceEEEEeccCcHHH
Q 003887 345 LKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIR------S-IVGQIRPDRQTLLFSATMPRKV 417 (789)
Q Consensus 345 l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~------~-il~~~~~~~q~ll~SATl~~~v 417 (789)
....+-+++..+.|..+. ...+.++++|||||+-.++..-|.+.++ . +...++....+|++-|++....
T Consensus 119 -~~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~t 194 (824)
T PF02399_consen 119 -GRPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQT 194 (824)
T ss_pred -ccccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHH
Confidence 012567777877776653 2346779999999999766543322222 2 3344566788999999999998
Q ss_pred HHHHHHHhCC-CeEEeeccccCccccceEEEEecC-----------------------------------CCcchHHHHH
Q 003887 418 EKLAREILSD-PVRVTVGEVGMANEDITQVVHVIP-----------------------------------SDAEKLPWLL 461 (789)
Q Consensus 418 ~~l~~~~l~~-p~~i~i~~~~~~~~~i~q~~~~~~-----------------------------------~~~~k~~~L~ 461 (789)
-+++..+..+ ++.+.+.......-.-.+-+ .+. ........+-
T Consensus 195 vdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~-~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~ 273 (824)
T PF02399_consen 195 VDFLASCRPDENIHVIVNTYASPGFSNRRCT-FLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFS 273 (824)
T ss_pred HHHHHHhCCCCcEEEEEeeeecCCcccceEE-EecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHH
Confidence 8888887654 34443332111100000000 000 0011122233
Q ss_pred HhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCcc-
Q 003887 462 EKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIK- 540 (789)
Q Consensus 462 ~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~- 540 (789)
.++..+..+.+|-||+.+...++.+++........+..+++..+..+. +. =++++|+|+|.++..|+++...+
T Consensus 274 ~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~--W~~~~VviYT~~itvG~Sf~~~HF 347 (824)
T PF02399_consen 274 ELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ES--WKKYDVVIYTPVITVGLSFEEKHF 347 (824)
T ss_pred HHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----cc--ccceeEEEEeceEEEEeccchhhc
Confidence 333333356688899999999999999999999999999887766532 21 35689999999999999997643
Q ss_pred -EEEEEcCC----CCHHHHHHHHhhcCCCCCCCeEEEEEEc
Q 003887 541 -SVVNFDIA----RDMDMHVHRIGRTGRAGDKDGTAYTLVT 576 (789)
Q Consensus 541 -~VI~~d~p----~s~~~y~QriGR~gR~G~~~G~~i~l~~ 576 (789)
-|+-|=-| .+..+..|++||+-... ....++.+.
T Consensus 348 ~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~--~~ei~v~~d 386 (824)
T PF02399_consen 348 DSMFAYVKPMSYGPDMVSVYQMLGRVRSLL--DNEIYVYID 386 (824)
T ss_pred eEEEEEecCCCCCCcHHHHHHHHHHHHhhc--cCeEEEEEe
Confidence 34444223 23556799999996665 344454443
No 164
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.18 E-value=2.1e-10 Score=128.82 Aligned_cols=107 Identities=23% Similarity=0.391 Sum_probs=90.5
Q ss_pred CcEEEEecccccHHHHHHHHHHc------------------CCceeeccCCCCHHHHHHHHHHhhcC--C-ccEEEeehh
Q 003887 471 GDVLVFASKKTTVDEIESQLAQK------------------GFKAAALHGDKDQASRMEILQKFKSG--V-YHVLIATDV 529 (789)
Q Consensus 471 ~kvLVF~~s~~~a~~l~~~L~~~------------------g~~v~~lhg~~~~~eR~~~l~~F~~G--~-~~VLVaT~v 529 (789)
.++|||.+....++.|...|.+. ......+.|..+..+|++.|++|.+- - .-+|++|..
T Consensus 720 ~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstra 799 (1387)
T KOG1016|consen 720 EKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRA 799 (1387)
T ss_pred ceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcc
Confidence 37999999999999999999865 23456789999999999999999873 2 358899999
Q ss_pred hhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCC-CeEEEEEEcc
Q 003887 530 AARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDK-DGTAYTLVTQ 577 (789)
Q Consensus 530 ~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~-~G~~i~l~~~ 577 (789)
..-|+|+-..+.+|+||.-|++.--.|.+-|+.|.|++ +..+|.|+..
T Consensus 800 g~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD 848 (1387)
T KOG1016|consen 800 GSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMD 848 (1387)
T ss_pred ccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhh
Confidence 99999999999999999999999999999999999954 4455556543
No 165
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.10 E-value=2.8e-10 Score=133.04 Aligned_cols=106 Identities=16% Similarity=0.199 Sum_probs=93.9
Q ss_pred CcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCC-ccE-EEeehhhhccCCCCCccEEEEEcCC
Q 003887 471 GDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGV-YHV-LIATDVAARGLDIKSIKSVVNFDIA 548 (789)
Q Consensus 471 ~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~-~~V-LVaT~v~~~GlDI~~v~~VI~~d~p 548 (789)
.++|||++....+..+...|...++....+.|.|+...|.+.+..|..+. ..| |++..+...|||+..+.+|+..|++
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 48999999999999999999999999999999999999999999998643 334 5677888999999999999999999
Q ss_pred CCHHHHHHHHhhcCCCCCCCeEEEEEEc
Q 003887 549 RDMDMHVHRIGRTGRAGDKDGTAYTLVT 576 (789)
Q Consensus 549 ~s~~~y~QriGR~gR~G~~~G~~i~l~~ 576 (789)
||+...-|.|-|++|.|+.+.+-++.+.
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~v~r~~ 647 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVKVSRFI 647 (674)
T ss_pred cChHHHHHHHHHHHHhcccceeeeeeeh
Confidence 9999999999999999976666554443
No 166
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.04 E-value=1.8e-08 Score=123.77 Aligned_cols=314 Identities=16% Similarity=0.171 Sum_probs=170.8
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHH
Q 003887 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (789)
Q Consensus 263 rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~ 342 (789)
+..+|.--+|||||+..+. +...++.. ...|.++||+-++.|-.|+.+++..+........ ...+..+..
T Consensus 274 ~~G~IWHtqGSGKTlTm~~-~A~~l~~~-----~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk 343 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFK-LARLLLEL-----PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELK 343 (962)
T ss_pred CceEEEeecCCchHHHHHH-HHHHHHhc-----cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHH
Confidence 4689999999999987443 33344443 4578999999999999999999999976432211 223333333
Q ss_pred HHHhcC-CcEEEeCHHHHHHHHhhcc--ccccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHH
Q 003887 343 KELKAG-CEIVIATPGRLIDMLKMKA--LTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEK 419 (789)
Q Consensus 343 ~~l~~~-~dIiV~Tp~~L~~~l~~~~--~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~ 419 (789)
..+..+ ..|||||.+.|-..+.... ..-.+-=+||+|||||-.. +.....+...+ +....++||.|+--.-..
T Consensus 344 ~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~---G~~~~~~~~~~-~~a~~~gFTGTPi~~~d~ 419 (962)
T COG0610 344 ELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQY---GELAKLLKKAL-KKAIFIGFTGTPIFKEDK 419 (962)
T ss_pred HHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccc---cHHHHHHHHHh-ccceEEEeeCCccccccc
Confidence 344434 4899999999988876541 1122234689999999442 22222222233 347899999996322111
Q ss_pred H-HHHHhCCCeEEeeccccCccc---cceEEEE-ecCC---C------------------------------------cc
Q 003887 420 L-AREILSDPVRVTVGEVGMANE---DITQVVH-VIPS---D------------------------------------AE 455 (789)
Q Consensus 420 l-~~~~l~~p~~i~i~~~~~~~~---~i~q~~~-~~~~---~------------------------------------~~ 455 (789)
. ....+++++..+.-.....-. ++..... .+.. . ..
T Consensus 420 ~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 499 (962)
T COG0610 420 DTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAV 499 (962)
T ss_pred cchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchH
Confidence 1 122333322222111000000 0000000 0000 0 00
Q ss_pred h----HHHHHHhcCC-CCCCCcEEEEecccccHHHHHHHHHHc-----------C--------C----ceeeccCCCCHH
Q 003887 456 K----LPWLLEKLPG-MIDDGDVLVFASKKTTVDEIESQLAQK-----------G--------F----KAAALHGDKDQA 507 (789)
Q Consensus 456 k----~~~L~~~L~~-~~~~~kvLVF~~s~~~a~~l~~~L~~~-----------g--------~----~v~~lhg~~~~~ 507 (789)
+ ...++..... .....++++.|.++..+..+.+.+... + + .....|.. ...
T Consensus 500 r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~ 578 (962)
T COG0610 500 RLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAK-LKD 578 (962)
T ss_pred HHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHH-HHH
Confidence 0 0011122222 223457777777777454444443221 0 0 00000111 222
Q ss_pred HHHHHHHHh--hcCCccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCC---CCeEEEEEEccccHHH
Q 003887 508 SRMEILQKF--KSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGD---KDGTAYTLVTQKEARF 582 (789)
Q Consensus 508 eR~~~l~~F--~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~---~~G~~i~l~~~~d~~~ 582 (789)
.+.....+| .....+|||.++++-.|.|.|.++++. +|-|.-....+|++.||.|.-. ..|..+.|+. -...
T Consensus 579 ~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g--l~e~ 655 (962)
T COG0610 579 EKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG--LKEA 655 (962)
T ss_pred HHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcc--hHHH
Confidence 333444443 456789999999999999999877665 5667777788999999999862 2355555544 3333
Q ss_pred HHHHHHHHHHcC
Q 003887 583 AGELVNSLIAAG 594 (789)
Q Consensus 583 ~~~l~~~L~~~~ 594 (789)
+.+.++.+...+
T Consensus 656 l~~Al~~Y~~~~ 667 (962)
T COG0610 656 LKKALKLYSNEG 667 (962)
T ss_pred HHHHHHHhhccc
Confidence 333344443333
No 167
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.02 E-value=4.7e-10 Score=104.95 Aligned_cols=134 Identities=16% Similarity=0.171 Sum_probs=79.4
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHH
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~ 341 (789)
|+-.++-..+|+|||.-.+.-++...+. .+.++|||.|||.++..+.+.++.. .+++....-+ .
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~-------~~~rvLvL~PTRvva~em~~aL~~~----~~~~~t~~~~---~-- 67 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK-------RRLRVLVLAPTRVVAEEMYEALKGL----PVRFHTNARM---R-- 67 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH-------TT--EEEEESSHHHHHHHHHHTTTS----SEEEESTTSS------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH-------ccCeEEEecccHHHHHHHHHHHhcC----CcccCceeee---c--
Confidence 3445778899999998755545554433 3677999999999999887776543 3333211111 0
Q ss_pred HHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhc--CCCceEEEEeccCcHH
Q 003887 342 FKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI--RPDRQTLLFSATMPRK 416 (789)
Q Consensus 342 ~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~--~~~~q~ll~SATl~~~ 416 (789)
....+.-|-|+|+..+...+.+ ...+.++++||+||||-+--. .-..+..+..+ .....+|++|||+|-.
T Consensus 68 --~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~--sIA~rg~l~~~~~~g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 68 --THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPT--SIAARGYLRELAESGEAKVIFMTATPPGS 139 (148)
T ss_dssp -----SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHH--HHHHHHHHHHHHHTTS-EEEEEESS-TT-
T ss_pred --cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHH--HHhhheeHHHhhhccCeeEEEEeCCCCCC
Confidence 2234577899999999888766 555789999999999963211 11112222222 1345799999999854
No 168
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.02 E-value=3.5e-09 Score=113.58 Aligned_cols=73 Identities=21% Similarity=0.195 Sum_probs=58.2
Q ss_pred CCcHHHHHHHH----HHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003887 247 KPTSIQCQALP----IILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 247 ~ptpiQ~~ai~----~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~ 321 (789)
.|+|.|.+.+. .+..+.++|+.+|||+|||++|++|++.++....... .+.+++|+++|..+..|...+++++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~--~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI--QKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc--cccceeEEeccHHHHHHHHHHHHhc
Confidence 36999999554 4557899999999999999999999998876542210 2347899999999999988888765
No 169
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.02 E-value=3.5e-09 Score=113.58 Aligned_cols=73 Identities=21% Similarity=0.195 Sum_probs=58.2
Q ss_pred CCcHHHHHHHH----HHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003887 247 KPTSIQCQALP----IILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 247 ~ptpiQ~~ai~----~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~ 321 (789)
.|+|.|.+.+. .+..+.++|+.+|||+|||++|++|++.++....... .+.+++|+++|..+..|...+++++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~--~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI--QKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc--cccceeEEeccHHHHHHHHHHHHhc
Confidence 36999999554 4557899999999999999999999998876542210 2347899999999999988888765
No 170
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.00 E-value=1.5e-09 Score=124.33 Aligned_cols=310 Identities=18% Similarity=0.255 Sum_probs=183.8
Q ss_pred HHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH-hhhcCcEEEEEE
Q 003887 255 ALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF-AKSHGIRVSAVY 333 (789)
Q Consensus 255 ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~-~~~~~i~v~~~~ 333 (789)
.+..+...+-+++-++||+|||.++.--+|..++...... -..+.+.-|+|..+.-+.+.+..- +...+-. +
T Consensus 386 i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~---~~na~v~qprrisaisiaerva~er~e~~g~t----v 458 (1282)
T KOG0921|consen 386 ILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGA---SFNAVVSQPRRISAISLAERVANERGEEVGET----C 458 (1282)
T ss_pred HHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccc---cccceeccccccchHHHHHHHHHhhHHhhccc----c
Confidence 3444445566788899999999998888888877653222 233778889998887776554332 2222211 1
Q ss_pred cCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchh-ccCCChHHHHHHHhhcCCCceEEEEecc
Q 003887 334 GGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM-FDLGFEPQIRSIVGQIRPDRQTLLFSAT 412 (789)
Q Consensus 334 gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m-~~~~f~~~i~~il~~~~~~~q~ll~SAT 412 (789)
|-........ -..---|..||-+.|++++... +..+.++|+||.|.. .+..|...+..-+..+-++.+.++||||
T Consensus 459 gy~vRf~Sa~-prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsat 534 (1282)
T KOG0921|consen 459 GYNVRFDSAT-PRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSAT 534 (1282)
T ss_pred cccccccccc-cccccceeeeccchhhhhhhhc---ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhcc
Confidence 2111111100 0112468999999999988644 557788999999953 3333443333333333345555666666
Q ss_pred CcHH--------------------HHHHHHHHhCCCeEEeeccccCc-cccce-----------EEEEecC---------
Q 003887 413 MPRK--------------------VEKLAREILSDPVRVTVGEVGMA-NEDIT-----------QVVHVIP--------- 451 (789)
Q Consensus 413 l~~~--------------------v~~l~~~~l~~p~~i~i~~~~~~-~~~i~-----------q~~~~~~--------- 451 (789)
+..+ ++.++...+..+........... ..... .....+.
T Consensus 535 IdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~ 614 (1282)
T KOG0921|consen 535 IDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTR 614 (1282)
T ss_pred cchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhh
Confidence 5322 11222222211111111000000 00000 0000000
Q ss_pred ------CCcch----HHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHc-------CCceeeccCCCCHHHHHHHHH
Q 003887 452 ------SDAEK----LPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK-------GFKAAALHGDKDQASRMEILQ 514 (789)
Q Consensus 452 ------~~~~k----~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~-------g~~v~~lhg~~~~~eR~~~l~ 514 (789)
+.... .+.++..+....-.+-||||.+--.....|..+|... .+.+..+|..+...+..++.+
T Consensus 615 ~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~ 694 (1282)
T KOG0921|consen 615 TAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFE 694 (1282)
T ss_pred hhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccC
Confidence 00011 1122222222222457999999999988888888654 467899999999888889999
Q ss_pred HhhcCCccEEEeehhhhccCCCCCccEEEEEcC------------------CCCHHHHHHHHhhcCCCCCCCeEEEEEEc
Q 003887 515 KFKSGVYHVLIATDVAARGLDIKSIKSVVNFDI------------------ARDMDMHVHRIGRTGRAGDKDGTAYTLVT 576 (789)
Q Consensus 515 ~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~------------------p~s~~~y~QriGR~gR~G~~~G~~i~l~~ 576 (789)
....|..+++++|.++..-+.|.++..||+.+. +.+....+||-||+||. ++|.|+.+.+
T Consensus 695 ~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv--R~G~~f~lcs 772 (1282)
T KOG0921|consen 695 PVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV--RPGFCFHLCS 772 (1282)
T ss_pred cccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee--cccccccccH
Confidence 999999999999999999999988887775332 23455668999999997 5799998875
Q ss_pred c
Q 003887 577 Q 577 (789)
Q Consensus 577 ~ 577 (789)
.
T Consensus 773 ~ 773 (1282)
T KOG0921|consen 773 R 773 (1282)
T ss_pred H
Confidence 4
No 171
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.94 E-value=1.8e-08 Score=118.13 Aligned_cols=318 Identities=20% Similarity=0.229 Sum_probs=192.2
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003887 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (789)
Q Consensus 247 ~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~ 326 (789)
-.+|+-.|.+-.+.....-|.-..||-|||+++.+|+.-..+. |..+.||...--||.--.+++.++...++
T Consensus 78 g~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~--------gkgVhvVTvNdYLA~RDae~m~~l~~~LG 149 (822)
T COG0653 78 GMRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA--------GKGVHVVTVNDYLARRDAEWMGPLYEFLG 149 (822)
T ss_pred CCChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC--------CCCcEEeeehHHhhhhCHHHHHHHHHHcC
Confidence 3455556666667777778999999999999999998655433 45578888889999988899999999999
Q ss_pred cEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHH-HHH------hhccccccceeEEEEcccchhcc----------C--
Q 003887 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLI-DML------KMKALTMSRVTYLVLDEADRMFD----------L-- 387 (789)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~-~~l------~~~~~~l~~i~~lVlDEah~m~~----------~-- 387 (789)
+.+.+...+.+..++.... .|||..+|-..|= +.+ ...........+.|+||+|-|+- +
T Consensus 150 lsvG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~ 227 (822)
T COG0653 150 LSVGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPA 227 (822)
T ss_pred CceeeccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeeccc
Confidence 9999999998766554433 4999999976651 111 11223345688999999997631 1
Q ss_pred -C---ChHHHHHHHhhcCCC--------ceEEEEeccCcHHHHH---------------------H--HHHH-hCC----
Q 003887 388 -G---FEPQIRSIVGQIRPD--------RQTLLFSATMPRKVEK---------------------L--AREI-LSD---- 427 (789)
Q Consensus 388 -~---f~~~i~~il~~~~~~--------~q~ll~SATl~~~v~~---------------------l--~~~~-l~~---- 427 (789)
+ ....+..++..+... .+.|.++-.=-..++. . +..+ ..+
T Consensus 228 ~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYI 307 (822)
T COG0653 228 EDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYI 307 (822)
T ss_pred ccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeE
Confidence 0 122222222222111 1111111110000000 0 0000 000
Q ss_pred --------------------------------------------------------------------------------
Q 003887 428 -------------------------------------------------------------------------------- 427 (789)
Q Consensus 428 -------------------------------------------------------------------------------- 427 (789)
T Consensus 308 Vrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l 387 (822)
T COG0653 308 VRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGL 387 (822)
T ss_pred EecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCC
Confidence
Q ss_pred CeEEeeccccCccccceEEEEecCCCcchHHHHHHhcCCCC-CCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCH
Q 003887 428 PVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQ 506 (789)
Q Consensus 428 p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~ 506 (789)
-+.+.....+... +-..-.+......|+..++..+.... .+.+|||-..+.+..+.+.+.|.+.+++..+|...-..
T Consensus 388 ~vv~iPTnrp~~R--~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~ 465 (822)
T COG0653 388 DVVVIPTNRPIIR--LDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHA 465 (822)
T ss_pred ceeeccCCCcccC--CCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHH
Confidence 0000000000000 00111111234567777777666543 45699999999999999999999999998888776553
Q ss_pred HHHHHHHHHhhcCCccEEEeehhhhccCCCCCcc-----------EEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEE
Q 003887 507 ASRMEILQKFKSGVYHVLIATDVAARGLDIKSIK-----------SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLV 575 (789)
Q Consensus 507 ~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~-----------~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~ 575 (789)
++.-+-.+.--.--|-|||.+|+||-||.--. +||--.--.+-.--.|--||+||.| .+|....|+
T Consensus 466 --~EA~Iia~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQG-DpG~S~F~l 542 (822)
T COG0653 466 --REAEIIAQAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQG-DPGSSRFYL 542 (822)
T ss_pred --HHHHHHhhcCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCC-Ccchhhhhh
Confidence 33333333322335889999999999987433 2343333333333347889999999 678887777
Q ss_pred cccc
Q 003887 576 TQKE 579 (789)
Q Consensus 576 ~~~d 579 (789)
+-.|
T Consensus 543 SleD 546 (822)
T COG0653 543 SLED 546 (822)
T ss_pred hhHH
Confidence 6554
No 172
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.69 E-value=5.3e-07 Score=94.56 Aligned_cols=129 Identities=22% Similarity=0.290 Sum_probs=95.6
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhh
Q 003887 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (789)
Q Consensus 245 ~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~ 324 (789)
-..|++.|.-++-.+..|+ |+...||-|||++..+|+..+.+. |..|=||+.+.-||..=++++..+...
T Consensus 75 g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~--------G~~V~vvT~NdyLA~RD~~~~~~~y~~ 144 (266)
T PF07517_consen 75 GLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ--------GKGVHVVTSNDYLAKRDAEEMRPFYEF 144 (266)
T ss_dssp S----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT--------SS-EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh--------cCCcEEEeccHHHhhccHHHHHHHHHH
Confidence 3468888988887776665 999999999999988888777643 556889999999999999999999999
Q ss_pred cCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHH-HHhhc------cccccceeEEEEcccchhc
Q 003887 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLID-MLKMK------ALTMSRVTYLVLDEADRMF 385 (789)
Q Consensus 325 ~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~-~l~~~------~~~l~~i~~lVlDEah~m~ 385 (789)
+|+.+.+++.+.+.... ++.. .++|+.+|...|.- .|+.. ......+.++||||+|.|+
T Consensus 145 LGlsv~~~~~~~~~~~r-~~~Y-~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 145 LGLSVGIITSDMSSEER-REAY-AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp TT--EEEEETTTEHHHH-HHHH-HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred hhhccccCccccCHHHH-HHHH-hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 99999999998875432 2222 37899999998864 34321 1124678999999999765
No 173
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.59 E-value=7.4e-07 Score=106.89 Aligned_cols=70 Identities=19% Similarity=0.078 Sum_probs=57.7
Q ss_pred HhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEeccCc
Q 003887 345 LKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (789)
Q Consensus 345 l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~ 414 (789)
+.....|+++||..|..-+..+.+.+..|..|||||||++....-+..|-.++..-.+..-+.+|||.+.
T Consensus 4 ly~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 4 VYLEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred HhhcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 4455789999999998888888899999999999999999876666666677766666777888988863
No 174
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.39 E-value=8.7e-09 Score=119.19 Aligned_cols=78 Identities=24% Similarity=0.400 Sum_probs=64.9
Q ss_pred chHHHHHHhcCCCCCC-CcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhc---CCccEEEeehhh
Q 003887 455 EKLPWLLEKLPGMIDD-GDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKS---GVYHVLIATDVA 530 (789)
Q Consensus 455 ~k~~~L~~~L~~~~~~-~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~---G~~~VLVaT~v~ 530 (789)
.|+..|...++++... .+||||.+.....+.|..++...+ ....+.|..+..+|+.++..|+. ....+|++|.+.
T Consensus 615 ~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~ 693 (696)
T KOG0383|consen 615 GKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAG 693 (696)
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccc
Confidence 4555566666655444 499999999999999999999988 89999999999999999999984 467799999887
Q ss_pred hcc
Q 003887 531 ARG 533 (789)
Q Consensus 531 ~~G 533 (789)
+.|
T Consensus 694 g~g 696 (696)
T KOG0383|consen 694 GLG 696 (696)
T ss_pred cCC
Confidence 654
No 175
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.24 E-value=1.4e-05 Score=96.28 Aligned_cols=74 Identities=19% Similarity=0.277 Sum_probs=58.4
Q ss_pred CccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCC-CCCe-------EEE-EEEccccHHHHHHHHHHH
Q 003887 520 VYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG-DKDG-------TAY-TLVTQKEARFAGELVNSL 590 (789)
Q Consensus 520 ~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G-~~~G-------~~i-~l~~~~d~~~~~~l~~~L 590 (789)
.+++|++-.++.+|-|.|+|-.++-+....+...-.|-+||..|.- +..| ... ++++.....++..|..-+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 5789999999999999999999999998889999999999999964 1112 122 344556788888888877
Q ss_pred HHc
Q 003887 591 IAA 593 (789)
Q Consensus 591 ~~~ 593 (789)
...
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 554
No 176
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.22 E-value=0.00091 Score=76.51 Aligned_cols=122 Identities=20% Similarity=0.307 Sum_probs=79.4
Q ss_pred CcEEEEecccccHHHHHHHHHHcCCc------eeeccCCCCHHHHHHHHHHhh----cCCccEEEee--hhhhccCCCCC
Q 003887 471 GDVLVFASKKTTVDEIESQLAQKGFK------AAALHGDKDQASRMEILQKFK----SGVYHVLIAT--DVAARGLDIKS 538 (789)
Q Consensus 471 ~kvLVF~~s~~~a~~l~~~L~~~g~~------v~~lhg~~~~~eR~~~l~~F~----~G~~~VLVaT--~v~~~GlDI~~ 538 (789)
+.|++|+++++....+.+.+.+.|+- =.++...... -+.+++.|. .|.-.||+|. .-+++|||+.+
T Consensus 630 gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~--~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D 707 (821)
T KOG1133|consen 630 GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT--VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFSD 707 (821)
T ss_pred CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc--HHHHHHHHHHHhhcCCCeEEEEEecccccccccccc
Confidence 78999999999999999998876531 1112222222 345666664 3565688776 67889999987
Q ss_pred --ccEEEEEcCCCC------------------------HHHH--------HHHHhhcCCCCCCCeEEEEEEccccHHHHH
Q 003887 539 --IKSVVNFDIARD------------------------MDMH--------VHRIGRTGRAGDKDGTAYTLVTQKEARFAG 584 (789)
Q Consensus 539 --v~~VI~~d~p~s------------------------~~~y--------~QriGR~gR~G~~~G~~i~l~~~~d~~~~~ 584 (789)
++.||..++|-. -+.| -|.|||+-|.- +.--+++|+.. +++.
T Consensus 708 ~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~-~DYA~i~LlD~---RY~~ 783 (821)
T KOG1133|consen 708 DLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHR-KDYASIYLLDK---RYAR 783 (821)
T ss_pred ccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhh-ccceeEEEehh---hhcC
Confidence 788888887741 1112 49999999976 55666666643 3332
Q ss_pred HHHHHHHHcCCCccHHHHHHH
Q 003887 585 ELVNSLIAAGQNVSMELMDLA 605 (789)
Q Consensus 585 ~l~~~L~~~~~~vp~~l~~~a 605 (789)
...+ .+|.|+.+..
T Consensus 784 p~~R-------KLp~WI~~~v 797 (821)
T KOG1133|consen 784 PLSR-------KLPKWIRKRV 797 (821)
T ss_pred chhh-------hccHHHHhHh
Confidence 2222 5677775443
No 177
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.22 E-value=1.5e-05 Score=82.18 Aligned_cols=73 Identities=21% Similarity=0.295 Sum_probs=51.6
Q ss_pred CCcHHHHHHHHHHHcCCC-EEEEccCCChhhHHHHHHHHHHHhcCc-ccccCCCCEEEEEcCcHHHHHHHHHHHHH
Q 003887 247 KPTSIQCQALPIILSGRD-IIGIAKTGSGKTAAFVLPMIVHIMDQP-ELQKEEGPIGVICAPTRELAHQIYLETKK 320 (789)
Q Consensus 247 ~ptpiQ~~ai~~il~grd-vl~~a~TGsGKTla~llp~l~~l~~~~-~~~~~~gp~vLIl~PTreLa~Qi~~~~~k 320 (789)
++.+.|.+|+..+++... .++.||+|+|||.+ +..++..++... ......+.++||++|+...+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~-l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTT-LASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHH-HHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHH-HHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 467899999999999998 99999999999964 445555552110 11124467899999999999999888887
No 178
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.22 E-value=5.5e-07 Score=105.84 Aligned_cols=258 Identities=20% Similarity=0.179 Sum_probs=155.5
Q ss_pred cHHHHHHHHHHHc-CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCc
Q 003887 249 TSIQCQALPIILS-GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGI 327 (789)
Q Consensus 249 tpiQ~~ai~~il~-grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i 327 (789)
.|+|.+.+..+.. ..++++.+|||+|||++|.++++..+...+ +.++++++|-..|+..-.+.+.+.....|+
T Consensus 929 n~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p------~~kvvyIap~kalvker~~Dw~~r~~~~g~ 1002 (1230)
T KOG0952|consen 929 NPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYP------GSKVVYIAPDKALVKERSDDWSKRDELPGI 1002 (1230)
T ss_pred CCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCC------CccEEEEcCCchhhcccccchhhhcccCCc
Confidence 3455555544432 257889999999999999998887765543 567999999999998888777776655588
Q ss_pred EEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHh--hccccccceeEEEEcccchhccCCChHHHHHHH-------h
Q 003887 328 RVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLK--MKALTMSRVTYLVLDEADRMFDLGFEPQIRSIV-------G 398 (789)
Q Consensus 328 ~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~--~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il-------~ 398 (789)
+++-+.|..... ... ...++|+|+||++...+.+ .....+.+++.+|+||.|.+.+. ..+.+..+. .
T Consensus 1003 k~ie~tgd~~pd--~~~-v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~-rgPVle~ivsr~n~~s~ 1078 (1230)
T KOG0952|consen 1003 KVIELTGDVTPD--VKA-VREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED-RGPVLEVIVSRMNYISS 1078 (1230)
T ss_pred eeEeccCccCCC--hhh-eecCceEEcccccccCccccccchhhhccccceeecccccccCC-CcceEEEEeeccccCcc
Confidence 898888876654 122 2348999999999988876 34556889999999999976543 233222221 1
Q ss_pred hcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCc-cccceEEE------EecCCCcchHHHHHHhcCCCCCCC
Q 003887 399 QIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMA-NEDITQVV------HVIPSDAEKLPWLLEKLPGMIDDG 471 (789)
Q Consensus 399 ~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~-~~~i~q~~------~~~~~~~~k~~~L~~~L~~~~~~~ 471 (789)
...+..+.+.+|.-+ .+..+++.|+-..+. .+..... .......+ +.++....+...-...++...+..
T Consensus 1079 ~t~~~vr~~glsta~-~na~dla~wl~~~~~---~nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~~ 1154 (1230)
T KOG0952|consen 1079 QTEEPVRYLGLSTAL-ANANDLADWLNIKDM---YNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPIK 1154 (1230)
T ss_pred ccCcchhhhhHhhhh-hccHHHHHHhCCCCc---CCCCcccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCCC
Confidence 223345555554333 344566666644433 1111111 11111111 122222233344455666666777
Q ss_pred cEEEEecccccHHH----HHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcc
Q 003887 472 DVLVFASKKTTVDE----IESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYH 522 (789)
Q Consensus 472 kvLVF~~s~~~a~~----l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~ 522 (789)
++|||+.+...... +...+....-+...++- +..+-+.++...+....+
T Consensus 1155 p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~--de~e~e~~~~~~~d~~Lk 1207 (1230)
T KOG0952|consen 1155 PVLIFVSSRRQTRLTALDLIASCATEDNPKQFLNM--DELELEIIMSKVRDTNLK 1207 (1230)
T ss_pred ceEEEeecccccccchHhHHhhccCCCCchhccCC--CHHHHHHHHHHhcccchh
Confidence 99999998765433 33333333333344443 355666666666554433
No 179
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.13 E-value=5.4e-05 Score=77.18 Aligned_cols=153 Identities=16% Similarity=0.251 Sum_probs=101.2
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHc---CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEE
Q 003887 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILS---GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIG 301 (789)
Q Consensus 225 ~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~---grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~v 301 (789)
.+|.....|..|+=.+... ..+++.|.+....+.+ +.+.+.+.-||.|||.+ ++|++..++... ...+
T Consensus 3 ~~w~p~~~P~wLl~E~e~~--iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg------~~Lv 73 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIESN--ILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADG------SRLV 73 (229)
T ss_pred CCCCchhChHHHHHHHHcC--ceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCC------CcEE
Confidence 3566666677776665533 4689999999999885 57999999999999997 899999887642 3456
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhh-cCcEEEEEEc--CCChH----HHHH----HHhcCCcEEEeCHHHHHHHHhhc----
Q 003887 302 VICAPTRELAHQIYLETKKFAKS-HGIRVSAVYG--GMSKL----DQFK----ELKAGCEIVIATPGRLIDMLKMK---- 366 (789)
Q Consensus 302 LIl~PTreLa~Qi~~~~~k~~~~-~~i~v~~~~g--g~~~~----~~~~----~l~~~~dIiV~Tp~~L~~~l~~~---- 366 (789)
.++||. .|..|..+.+...+.. .+-++..+-- ..... ..+. +......|+++||+.++.+.-..
T Consensus 74 rviVpk-~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l 152 (229)
T PF12340_consen 74 RVIVPK-ALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERL 152 (229)
T ss_pred EEEcCH-HHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHH
Confidence 778885 7999998888865543 2333322221 11111 1122 23345679999999987654221
Q ss_pred ---c-----------ccccceeEEEEcccchhccC
Q 003887 367 ---A-----------LTMSRVTYLVLDEADRMFDL 387 (789)
Q Consensus 367 ---~-----------~~l~~i~~lVlDEah~m~~~ 387 (789)
. ..+.....-|+||+|.++..
T Consensus 153 ~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~~ 187 (229)
T PF12340_consen 153 QDGKPEEARELLKIQKWLDEHSRDILDESDEILSV 187 (229)
T ss_pred HhcCHHHHHHHHHHHHHHHhcCCeEeECchhccCc
Confidence 0 01334555799999987653
No 180
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.09 E-value=1.7e-05 Score=80.26 Aligned_cols=123 Identities=19% Similarity=0.205 Sum_probs=72.5
Q ss_pred CCcHHHHHHHHHHHcCC--CEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhh
Q 003887 247 KPTSIQCQALPIILSGR--DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (789)
Q Consensus 247 ~ptpiQ~~ai~~il~gr--dvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~ 324 (789)
+|++-|.+++..++... -+++.++.|+|||.+ +..+...+.. .+.++++++||...+..+.+.+
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~-------~g~~v~~~apT~~Aa~~L~~~~------ 66 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA-------AGKRVIGLAPTNKAAKELREKT------ 66 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH-------TT--EEEEESSHHHHHHHHHHH------
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh-------CCCeEEEECCcHHHHHHHHHhh------
Confidence 37889999999997553 366789999999974 3334444322 3577999999998887654441
Q ss_pred cCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccc----cccceeEEEEcccchhccCCChHHHHHHHhhc
Q 003887 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL----TMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI 400 (789)
Q Consensus 325 ~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~----~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~ 400 (789)
++.+ .|-..++........ .+...++||||||-.+. ...+..++..+
T Consensus 67 -~~~a------------------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~ 117 (196)
T PF13604_consen 67 -GIEA------------------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLA 117 (196)
T ss_dssp -TS-E------------------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS
T ss_pred -Ccch------------------------hhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHH
Confidence 2222 232222221111111 15566799999999754 34666777776
Q ss_pred CC-CceEEEEecc
Q 003887 401 RP-DRQTLLFSAT 412 (789)
Q Consensus 401 ~~-~~q~ll~SAT 412 (789)
+. ..++|++.-+
T Consensus 118 ~~~~~klilvGD~ 130 (196)
T PF13604_consen 118 KKSGAKLILVGDP 130 (196)
T ss_dssp -T-T-EEEEEE-T
T ss_pred HhcCCEEEEECCc
Confidence 65 6677777665
No 181
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.07 E-value=4.3e-05 Score=86.33 Aligned_cols=86 Identities=21% Similarity=0.286 Sum_probs=70.1
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHH
Q 003887 238 HAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLE 317 (789)
Q Consensus 238 ~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~ 317 (789)
..+...++.++..-|..|+..+|+..-.||++|+|+|||.+ ...++.|+.++ ....+||++|+...+.|+++.
T Consensus 401 ~~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvt-sa~IVyhl~~~------~~~~VLvcApSNiAVDqLaeK 473 (935)
T KOG1802|consen 401 RRFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVT-SATIVYHLARQ------HAGPVLVCAPSNIAVDQLAEK 473 (935)
T ss_pred hhhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceeh-hHHHHHHHHHh------cCCceEEEcccchhHHHHHHH
Confidence 35666788899999999999999999999999999999987 45566676554 244589999999999999888
Q ss_pred HHHHhhhcCcEEEEEEc
Q 003887 318 TKKFAKSHGIRVSAVYG 334 (789)
Q Consensus 318 ~~k~~~~~~i~v~~~~g 334 (789)
+.+. +++|+-+..
T Consensus 474 Ih~t----gLKVvRl~a 486 (935)
T KOG1802|consen 474 IHKT----GLKVVRLCA 486 (935)
T ss_pred HHhc----CceEeeeeh
Confidence 8776 677766554
No 182
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.03 E-value=0.00048 Score=80.41 Aligned_cols=74 Identities=15% Similarity=0.234 Sum_probs=58.8
Q ss_pred CCccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCC-CCCeEE-----------EEEEccccHHHHHHH
Q 003887 519 GVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG-DKDGTA-----------YTLVTQKEARFAGEL 586 (789)
Q Consensus 519 G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G-~~~G~~-----------i~l~~~~d~~~~~~l 586 (789)
...++|.+-.++-+|-|-|+|=+++-+....|...=+|.+||..|.- +..|.- .+|+...+..++..|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 34789999999999999999999999999999999999999999975 223332 235666778888877
Q ss_pred HHHHHH
Q 003887 587 VNSLIA 592 (789)
Q Consensus 587 ~~~L~~ 592 (789)
++-+..
T Consensus 562 qkEI~~ 567 (985)
T COG3587 562 QKEIND 567 (985)
T ss_pred HHHHHH
Confidence 765543
No 183
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.00 E-value=0.00068 Score=80.60 Aligned_cols=68 Identities=18% Similarity=0.230 Sum_probs=54.2
Q ss_pred CCCcHHHHHHHHHHHcC-CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003887 246 EKPTSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~g-rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~ 321 (789)
..+.+.|..|+..++.. ..+++.+|+|+|||.+ +..++.++... ++++|+++||...+.++.+.+...
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t-~~~ii~~~~~~-------g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRT-LVELIRQLVKR-------GLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHH-HHHHHHHHHHc-------CCCEEEEcCcHHHHHHHHHHHHhC
Confidence 46799999999999877 5678999999999976 44555555432 557999999999999988877653
No 184
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.00 E-value=5e-05 Score=80.18 Aligned_cols=168 Identities=12% Similarity=0.099 Sum_probs=105.0
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHc----------CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCC
Q 003887 230 CGFSTQLMHAISKQGYEKPTSIQCQALPIILS----------GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGP 299 (789)
Q Consensus 230 ~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~----------grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp 299 (789)
+.||+.++.. ..++..|.+++-.+.+ ....++-..||.||--+..-.++.+++.. ..
T Consensus 26 ~~lp~~~~~~------g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G-------r~ 92 (303)
T PF13872_consen 26 LHLPEEVIDS------GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG-------RK 92 (303)
T ss_pred cCCCHHHHhc------ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC-------CC
Confidence 3566655442 3578889998866542 34678889999999877555555555432 34
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhc---cccc------
Q 003887 300 IGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK---ALTM------ 370 (789)
Q Consensus 300 ~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~---~~~l------ 370 (789)
++|+|..+-.|.....+.++.+... .+.+..+.. .... ....-...||++||..|....... ...|
T Consensus 93 r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~-~~~~---~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W 167 (303)
T PF13872_consen 93 RAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNK-FKYG---DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDW 167 (303)
T ss_pred ceEEEECChhhhhHHHHHHHHhCCC-cccceechh-hccC---cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHH
Confidence 5899999999999888888876432 233322211 0000 001123569999999998775321 1111
Q ss_pred ---cceeEEEEcccchhccCCCh--------HHHHHHHhhcCCCceEEEEeccCcHH
Q 003887 371 ---SRVTYLVLDEADRMFDLGFE--------PQIRSIVGQIRPDRQTLLFSATMPRK 416 (789)
Q Consensus 371 ---~~i~~lVlDEah~m~~~~f~--------~~i~~il~~~~~~~q~ll~SATl~~~ 416 (789)
..=.+|||||||++.+..-. ..+..+.+.++ +.+++.+|||-..+
T Consensus 168 ~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP-~ARvvY~SATgase 223 (303)
T PF13872_consen 168 CGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLP-NARVVYASATGASE 223 (303)
T ss_pred HhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCC-CCcEEEecccccCC
Confidence 11258999999998876431 23444555564 55699999997544
No 185
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.84 E-value=2.3e-05 Score=77.26 Aligned_cols=78 Identities=23% Similarity=0.373 Sum_probs=58.3
Q ss_pred CCcEEEEecccccHHHHHHHHHHcCC--ceeeccCCCCHHHHHHHHHHhhcCCccEEEeeh--hhhccCCCCC--ccEEE
Q 003887 470 DGDVLVFASKKTTVDEIESQLAQKGF--KAAALHGDKDQASRMEILQKFKSGVYHVLIATD--VAARGLDIKS--IKSVV 543 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~g~--~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~--v~~~GlDI~~--v~~VI 543 (789)
++++|||++++..++.+.+.+..... .+.++.. ...++..+++.|+.+...||+++. .+.+|+|+++ ++.||
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vi 86 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVI 86 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheee
Confidence 48999999999999999999976531 1222332 345788999999999999999998 8899999997 88899
Q ss_pred EEcCCC
Q 003887 544 NFDIAR 549 (789)
Q Consensus 544 ~~d~p~ 549 (789)
...+|.
T Consensus 87 i~glPf 92 (167)
T PF13307_consen 87 IVGLPF 92 (167)
T ss_dssp EES---
T ss_pred ecCCCC
Confidence 988774
No 186
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.73 E-value=9.3e-05 Score=74.78 Aligned_cols=146 Identities=16% Similarity=0.221 Sum_probs=74.2
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHH-------HHHH
Q 003887 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI-------YLET 318 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi-------~~~~ 318 (789)
...++.|..++..++...-+++.++.|+|||+.++..++..+... .-.+++|+-|+.+....+ .+.+
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g------~~~kiii~Rp~v~~~~~lGflpG~~~eK~ 76 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG------EYDKIIITRPPVEAGEDLGFLPGDLEEKM 76 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT------S-SEEEEEE-S--TT----SS--------
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC------CCcEEEEEecCCCCccccccCCCCHHHHH
Confidence 456789999999999888899999999999999888888877552 234577887776532111 1111
Q ss_pred HHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHh
Q 003887 319 KKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVG 398 (789)
Q Consensus 319 ~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~ 398 (789)
.-|+...--....+.+ ......+.....|-+..+.-+. + ..+. -.+||||||+.+. ..++..++.
T Consensus 77 ~p~~~p~~d~l~~~~~----~~~~~~~~~~~~Ie~~~~~~iR-----G-rt~~-~~~iIvDEaQN~t----~~~~k~ilT 141 (205)
T PF02562_consen 77 EPYLRPIYDALEELFG----KEKLEELIQNGKIEIEPLAFIR-----G-RTFD-NAFIIVDEAQNLT----PEELKMILT 141 (205)
T ss_dssp -TTTHHHHHHHTTTS-----TTCHHHHHHTTSEEEEEGGGGT-----T---B--SEEEEE-SGGG------HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhC----hHhHHHHhhcCeEEEEehhhhc-----C-cccc-ceEEEEecccCCC----HHHHHHHHc
Confidence 1111000000000001 1122223333455555532221 1 1122 3789999999854 568889999
Q ss_pred hcCCCceEEEEecc
Q 003887 399 QIRPDRQTLLFSAT 412 (789)
Q Consensus 399 ~~~~~~q~ll~SAT 412 (789)
++..+.+++++.-.
T Consensus 142 R~g~~skii~~GD~ 155 (205)
T PF02562_consen 142 RIGEGSKIIITGDP 155 (205)
T ss_dssp TB-TT-EEEEEE--
T ss_pred ccCCCcEEEEecCc
Confidence 99888888877654
No 187
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.72 E-value=0.00031 Score=82.44 Aligned_cols=142 Identities=20% Similarity=0.214 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEE
Q 003887 250 SIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRV 329 (789)
Q Consensus 250 piQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v 329 (789)
++|+.|+..++..+-+++.++.|+|||.+ +..++..+...... ...+++++++||--.|..+.+.+..........
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~-v~~ll~~l~~~~~~--~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~- 223 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTT-VARLLLALVKQSPK--QGKLRIALAAPTGKAAARLAESLRKAVKNLAAA- 223 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHH-HHHHHHHHHHhccc--cCCCcEEEECCcHHHHHHHHHHHHhhhcccccc-
Confidence 79999999999999999999999999975 44444444332110 113579999999998888777666543221110
Q ss_pred EEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhh------ccccccceeEEEEcccchhccCCChHHHHHHHhhcCCC
Q 003887 330 SAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM------KALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD 403 (789)
Q Consensus 330 ~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~------~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~ 403 (789)
. .+.....+-..|..+|+..... ...+.-.+++||||||-++- ...+..++..+++.
T Consensus 224 --------~-----~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~~ 286 (586)
T TIGR01447 224 --------E-----ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPPN 286 (586)
T ss_pred --------h-----hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCCC
Confidence 0 0011112224455555433211 11123357999999998643 34667788888889
Q ss_pred ceEEEEecc
Q 003887 404 RQTLLFSAT 412 (789)
Q Consensus 404 ~q~ll~SAT 412 (789)
.++|++.=.
T Consensus 287 ~rlIlvGD~ 295 (586)
T TIGR01447 287 TKLILLGDK 295 (586)
T ss_pred CEEEEECCh
Confidence 998888766
No 188
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.69 E-value=0.00015 Score=80.35 Aligned_cols=107 Identities=19% Similarity=0.220 Sum_probs=67.2
Q ss_pred EEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHH
Q 003887 265 IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE 344 (789)
Q Consensus 265 vl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~ 344 (789)
+||.+..|||||++ ++.++..+.. ...+..++++++...|...+.+.+..... .
T Consensus 4 ~~I~G~aGTGKTvl-a~~l~~~l~~-----~~~~~~~~~l~~n~~l~~~l~~~l~~~~~----------~---------- 57 (352)
T PF09848_consen 4 ILITGGAGTGKTVL-ALNLAKELQN-----SEEGKKVLYLCGNHPLRNKLREQLAKKYN----------P---------- 57 (352)
T ss_pred EEEEecCCcCHHHH-HHHHHHHhhc-----cccCCceEEEEecchHHHHHHHHHhhhcc----------c----------
Confidence 67889999999987 3444444411 13466789999999999877777665430 0
Q ss_pred HhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCC-------ChHHHHHHHhh
Q 003887 345 LKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG-------FEPQIRSIVGQ 399 (789)
Q Consensus 345 l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~-------f~~~i~~il~~ 399 (789)
......+..+..++..+.........+++|||||||+|.... ...++..++..
T Consensus 58 --~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 --KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred --chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 001223344444444333223456788999999999998731 24566666665
No 189
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.67 E-value=0.00034 Score=82.26 Aligned_cols=143 Identities=20% Similarity=0.206 Sum_probs=90.8
Q ss_pred CcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCc
Q 003887 248 PTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGI 327 (789)
Q Consensus 248 ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i 327 (789)
..++|+.|+-..+..+-+++.+++|+|||.+ +..++..+.... ......+++++||...|..+.+.+.......++
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~-v~~ll~~l~~~~---~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTT-VAKLLAALIQLA---DGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHH-HHHHHHHHHHhc---CCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 3589999999999999999999999999976 444444443321 112356889999999998888777654432221
Q ss_pred EEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHh------hccccccceeEEEEcccchhccCCChHHHHHHHhhcC
Q 003887 328 RVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLK------MKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR 401 (789)
Q Consensus 328 ~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~------~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~ 401 (789)
. .. +......-..|-.+|+.... ....+.-.+++||||||-++- ...+..++..++
T Consensus 229 ~-----------~~---~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~al~ 290 (615)
T PRK10875 229 T-----------DE---QKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDALP 290 (615)
T ss_pred c-----------hh---hhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHhcc
Confidence 0 00 00001112334444433211 111123356899999999642 456677888899
Q ss_pred CCceEEEEecc
Q 003887 402 PDRQTLLFSAT 412 (789)
Q Consensus 402 ~~~q~ll~SAT 412 (789)
+..++|++.-.
T Consensus 291 ~~~rlIlvGD~ 301 (615)
T PRK10875 291 PHARVIFLGDR 301 (615)
T ss_pred cCCEEEEecch
Confidence 99999988766
No 190
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.63 E-value=0.00012 Score=82.54 Aligned_cols=65 Identities=23% Similarity=0.368 Sum_probs=51.7
Q ss_pred CCcHHHHHHHHHHHcCCC-EEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHH
Q 003887 247 KPTSIQCQALPIILSGRD-IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETK 319 (789)
Q Consensus 247 ~ptpiQ~~ai~~il~grd-vl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~ 319 (789)
.+.+-|.+|+...++.++ .++.+|+|+|||.. +.-++..++.+ +.++||++||.+.+..+.+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~T-lvEiI~qlvk~-------~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRT-LVEIISQLVKQ-------KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceee-HHHHHHHHHHc-------CCeEEEEcCchHHHHHHHHHhc
Confidence 467899999999998866 56789999999987 44455555544 5779999999999999988543
No 191
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.58 E-value=0.00028 Score=82.61 Aligned_cols=137 Identities=17% Similarity=0.225 Sum_probs=87.4
Q ss_pred CCcHHHHHHHHHHH----cCCCEEEEccCCChhhHHHHHHHHHHHhcCcc--------ccc-------------------
Q 003887 247 KPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPE--------LQK------------------- 295 (789)
Q Consensus 247 ~ptpiQ~~ai~~il----~grdvl~~a~TGsGKTla~llp~l~~l~~~~~--------~~~------------------- 295 (789)
+|+|.|...+..++ ...++++..|||+|||++.|-..|.+...+.. ..+
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 67899988877665 45789999999999999866555555432210 000
Q ss_pred -------CCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCC--------------C-hHH-------------
Q 003887 296 -------EEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGM--------------S-KLD------------- 340 (789)
Q Consensus 296 -------~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~--------------~-~~~------------- 340 (789)
-..|++.+-.-|..-..|+.+++++..-. ++.+++-.-. . ...
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~--vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~~C~f 178 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR--VKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSRSCHF 178 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCCC--CceEEeecchhhccCHHHhhhhcchhhhhHHHhhcccccccc
Confidence 01477778777887788999999887543 1111111000 0 000
Q ss_pred ------------------HH------------------HHHhcCCcEEEeCHHHHHHHHhhcc--ccccceeEEEEcccc
Q 003887 341 ------------------QF------------------KELKAGCEIVIATPGRLIDMLKMKA--LTMSRVTYLVLDEAD 382 (789)
Q Consensus 341 ------------------~~------------------~~l~~~~dIiV~Tp~~L~~~l~~~~--~~l~~i~~lVlDEah 382 (789)
.+ +.+...+|||+|-|..|++-..+.. ++|. =.+|||||||
T Consensus 179 ~~~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~Lk-nsIVIfDEAH 257 (945)
T KOG1132|consen 179 YKIVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLK-NSIVIFDEAH 257 (945)
T ss_pred cccccccccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhcccccccc-ccEEEEeccc
Confidence 01 1223458999999999998776654 4443 3789999999
Q ss_pred hhcc
Q 003887 383 RMFD 386 (789)
Q Consensus 383 ~m~~ 386 (789)
.|.+
T Consensus 258 NiEd 261 (945)
T KOG1132|consen 258 NIED 261 (945)
T ss_pred cHHH
Confidence 8844
No 192
>PRK10536 hypothetical protein; Provisional
Probab=97.52 E-value=0.0016 Score=67.89 Aligned_cols=146 Identities=14% Similarity=0.118 Sum_probs=81.7
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHH-------HHHH
Q 003887 244 GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAH-------QIYL 316 (789)
Q Consensus 244 g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~-------Qi~~ 316 (789)
++...+..|...+.++.+...+++.+++|+|||+..+..++..++.. .-.+++|.=|+.+... .+.+
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~------~~~kIiI~RP~v~~ge~LGfLPG~~~e 129 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK------DVDRIIVTRPVLQADEDLGFLPGDIAE 129 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC------CeeEEEEeCCCCCchhhhCcCCCCHHH
Confidence 44567889999999999988888999999999988766666555442 1234566666643221 1112
Q ss_pred HHHHHhhhcCcEEEEEEcCCChHHHHHHHh--cCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHH
Q 003887 317 ETKKFAKSHGIRVSAVYGGMSKLDQFKELK--AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIR 394 (789)
Q Consensus 317 ~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~--~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~ 394 (789)
.+..|....--....+.+. ..+..+. ....|-|+...- ++-. .| .-.+||||||+.+- ..++.
T Consensus 130 K~~p~~~pi~D~L~~~~~~----~~~~~~~~~~~~~Iei~~l~y----mRGr--tl-~~~~vIvDEaqn~~----~~~~k 194 (262)
T PRK10536 130 KFAPYFRPVYDVLVRRLGA----SFMQYCLRPEIGKVEIAPFAY----MRGR--TF-ENAVVILDEAQNVT----AAQMK 194 (262)
T ss_pred HHHHHHHHHHHHHHHHhCh----HHHHHHHHhccCcEEEecHHH----hcCC--cc-cCCEEEEechhcCC----HHHHH
Confidence 2222211100000000111 1222221 123344544322 2211 22 33789999999854 36788
Q ss_pred HHHhhcCCCceEEEEe
Q 003887 395 SIVGQIRPDRQTLLFS 410 (789)
Q Consensus 395 ~il~~~~~~~q~ll~S 410 (789)
.++.++..+.++|+..
T Consensus 195 ~~ltR~g~~sk~v~~G 210 (262)
T PRK10536 195 MFLTRLGENVTVIVNG 210 (262)
T ss_pred HHHhhcCCCCEEEEeC
Confidence 8888888777777654
No 193
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.51 E-value=0.00088 Score=80.85 Aligned_cols=126 Identities=21% Similarity=0.148 Sum_probs=80.1
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003887 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~ 325 (789)
..+++-|.+|+..+...+-+++.+..|+|||.+ +-.++..+... .....+++++||-..|..+.+..
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~-l~~i~~~~~~~-----~~~~~v~l~ApTg~AA~~L~e~~------- 388 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTI-TRAIIELAEEL-----GGLLPVGLAAPTGRAAKRLGEVT------- 388 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHH-HHHHHHHHHHc-----CCCceEEEEeCchHHHHHHHHhc-------
Confidence 479999999999999989999999999999975 33333333221 01145888999988886543321
Q ss_pred CcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHh-----hccccccceeEEEEcccchhccCCChHHHHHHHhhc
Q 003887 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLK-----MKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI 400 (789)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~-----~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~ 400 (789)
+... .|..+|+.... .........++||||||+++- ...+..++..+
T Consensus 389 g~~a------------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd----~~~~~~Ll~~~ 440 (720)
T TIGR01448 389 GLTA------------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMD----TWLALSLLAAL 440 (720)
T ss_pred CCcc------------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccCC----HHHHHHHHHhC
Confidence 2111 11111111100 000112357899999999754 34556777788
Q ss_pred CCCceEEEEecc
Q 003887 401 RPDRQTLLFSAT 412 (789)
Q Consensus 401 ~~~~q~ll~SAT 412 (789)
+...++|++.-+
T Consensus 441 ~~~~rlilvGD~ 452 (720)
T TIGR01448 441 PDHARLLLVGDT 452 (720)
T ss_pred CCCCEEEEECcc
Confidence 888888887766
No 194
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.31 E-value=0.00086 Score=70.66 Aligned_cols=82 Identities=22% Similarity=0.419 Sum_probs=65.1
Q ss_pred HHHHHhhcCCccEEEeehhhhccCCCCC--------ccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccc---c
Q 003887 511 EILQKFKSGVYHVLIATDVAARGLDIKS--------IKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK---E 579 (789)
Q Consensus 511 ~~l~~F~~G~~~VLVaT~v~~~GlDI~~--------v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~---d 579 (789)
...+.|++|+..|+|.+++++.|+.+.. -++-|.+.+||+.+..+|.+||++|.|+...-.|.++..+ +
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 4577999999999999999999998764 3456678999999999999999999997666666655443 5
Q ss_pred HHHHHHHHHHHHH
Q 003887 580 ARFAGELVNSLIA 592 (789)
Q Consensus 580 ~~~~~~l~~~L~~ 592 (789)
.+++..+.+.|..
T Consensus 132 ~Rfas~va~rL~s 144 (278)
T PF13871_consen 132 RRFASTVARRLES 144 (278)
T ss_pred HHHHHHHHHHHhh
Confidence 6666666666644
No 195
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.26 E-value=0.0013 Score=77.83 Aligned_cols=138 Identities=20% Similarity=0.221 Sum_probs=86.8
Q ss_pred cCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCC-EEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCc
Q 003887 229 DCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRD-IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (789)
Q Consensus 229 ~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grd-vl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PT 307 (789)
...+.+.+...+ +..+..-|++|+-.++..+| .||.+=+|+|||.. +..++.-++. .|.+||+.+=|
T Consensus 655 ~~~~~p~~~~~~----~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTt-I~~LIkiL~~-------~gkkVLLtsyT 722 (1100)
T KOG1805|consen 655 SKVLIPKIKKII----LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTT-ISLLIKILVA-------LGKKVLLTSYT 722 (1100)
T ss_pred ccccCchhhHHH----HhhcCHHHHHHHHHHHhccchheeecCCCCCchhh-HHHHHHHHHH-------cCCeEEEEehh
Confidence 344555554432 35688899999999888776 56779999999976 2233333322 36779999999
Q ss_pred HHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHH-----------------HHHhcCCcEEEeCHHHHHHHHhhccccc
Q 003887 308 RELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF-----------------KELKAGCEIVIATPGRLIDMLKMKALTM 370 (789)
Q Consensus 308 reLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~-----------------~~l~~~~dIiV~Tp~~L~~~l~~~~~~l 370 (789)
...+..+.-.++.+ ++...-+-.+....+++ ........||.||--.+.+.+ +..
T Consensus 723 hsAVDNILiKL~~~----~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl----f~~ 794 (1100)
T KOG1805|consen 723 HSAVDNILIKLKGF----GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL----FVN 794 (1100)
T ss_pred hHHHHHHHHHHhcc----CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh----hhc
Confidence 88887774444443 33332222222222222 233445788888865554433 345
Q ss_pred cceeEEEEcccchhcc
Q 003887 371 SRVTYLVLDEADRMFD 386 (789)
Q Consensus 371 ~~i~~lVlDEah~m~~ 386 (789)
..++|+|||||-.|..
T Consensus 795 R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 795 RQFDYCIIDEASQILL 810 (1100)
T ss_pred cccCEEEEcccccccc
Confidence 6799999999998754
No 196
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.11 E-value=0.00094 Score=75.17 Aligned_cols=142 Identities=18% Similarity=0.191 Sum_probs=72.0
Q ss_pred EEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHH-HhhhcCcEEEEEEcCCCh----HHH
Q 003887 267 GIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK-FAKSHGIRVSAVYGGMSK----LDQ 341 (789)
Q Consensus 267 ~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k-~~~~~~i~v~~~~gg~~~----~~~ 341 (789)
..+.||||||++... ++.+++.+. -...|+.|..-........-+.. ....+-+.-.+.+++... -..
T Consensus 2 f~matgsgkt~~ma~-lil~~y~kg------yr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~ 74 (812)
T COG3421 2 FEMATGSGKTLVMAG-LILECYKKG------YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNN 74 (812)
T ss_pred cccccCCChhhHHHH-HHHHHHHhc------hhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecc
Confidence 457899999998544 444444432 22356666655554433222111 100000111111121111 011
Q ss_pred HHHHhcCCcEEEeCHHHHHHHHhhcc---c---cccceeE-EEEcccchhccC-------------CChHHHHHHHhhcC
Q 003887 342 FKELKAGCEIVIATPGRLIDMLKMKA---L---TMSRVTY-LVLDEADRMFDL-------------GFEPQIRSIVGQIR 401 (789)
Q Consensus 342 ~~~l~~~~dIiV~Tp~~L~~~l~~~~---~---~l~~i~~-lVlDEah~m~~~-------------~f~~~i~~il~~~~ 401 (789)
+.+...+..|+++|.+.|...+.+.. + .|.+..+ .+-||||++-.. .|...+...++. .
T Consensus 75 fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~-n 153 (812)
T COG3421 75 FSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQ-N 153 (812)
T ss_pred cCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhc-C
Confidence 11233458899999999987775422 2 2344443 466999997421 233333333332 3
Q ss_pred CCceEEEEeccCcHH
Q 003887 402 PDRQTLLFSATMPRK 416 (789)
Q Consensus 402 ~~~q~ll~SATl~~~ 416 (789)
++.-++.+|||.|.+
T Consensus 154 kd~~~lef~at~~k~ 168 (812)
T COG3421 154 KDNLLLEFSATIPKE 168 (812)
T ss_pred CCceeehhhhcCCcc
Confidence 456678899999843
No 197
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.08 E-value=0.0073 Score=73.29 Aligned_cols=124 Identities=18% Similarity=0.166 Sum_probs=76.5
Q ss_pred CCCcHHHHHHHHHHHcC-CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhh
Q 003887 246 EKPTSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~g-rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~ 324 (789)
..+++-|.+|+..++.+ +-+++.++.|+|||.. +-.+..++.. .+..+++++||--.|..+.+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl--l~~i~~~~~~------~g~~V~~~ApTg~Aa~~L~~~------- 415 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM--LKAAREAWEA------AGYRVIGAALSGKAAEGLQAE------- 415 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH--HHHHHHHHHh------CCCeEEEEeCcHHHHHHHHhc-------
Confidence 45899999999999875 5678899999999964 3334443332 367799999997766554321
Q ss_pred cCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhc-CCC
Q 003887 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPD 403 (789)
Q Consensus 325 ~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~-~~~ 403 (789)
.++... |-.+|+..+......+...++||||||-++-. ..+..++... ...
T Consensus 416 ~g~~a~------------------------Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~----~~~~~Ll~~~~~~~ 467 (744)
T TIGR02768 416 SGIESR------------------------TLASLEYAWANGRDLLSDKDVLVIDEAGMVGS----RQMARVLKEAEEAG 467 (744)
T ss_pred cCCcee------------------------eHHHHHhhhccCcccCCCCcEEEEECcccCCH----HHHHHHHHHHHhcC
Confidence 122211 22222111122233456789999999997543 2344455432 356
Q ss_pred ceEEEEecc
Q 003887 404 RQTLLFSAT 412 (789)
Q Consensus 404 ~q~ll~SAT 412 (789)
.++|++.=+
T Consensus 468 ~kliLVGD~ 476 (744)
T TIGR02768 468 AKVVLVGDP 476 (744)
T ss_pred CEEEEECCh
Confidence 677777644
No 198
>PF13245 AAA_19: Part of AAA domain
Probab=97.05 E-value=0.0019 Score=54.69 Aligned_cols=53 Identities=21% Similarity=0.298 Sum_probs=37.1
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHH
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLET 318 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~ 318 (789)
..-+++.++.|+|||.. ++.++.+++... ...+..+||++||+..+.++.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~-~~~~i~~l~~~~---~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTT-LAARIAELLAAR---ADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHHHHh---cCCCCeEEEECCCHHHHHHHHHHH
Confidence 33455699999999976 444555554211 011567999999999999887777
No 199
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.97 E-value=0.0017 Score=78.77 Aligned_cols=154 Identities=19% Similarity=0.172 Sum_probs=92.0
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCcc-----c-----ccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEE
Q 003887 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPE-----L-----QKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVS 330 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla~llp~l~~l~~~~~-----~-----~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~ 330 (789)
.|++++++..+|+|||..-+...+.+.-+... + ........|||||. .+..||.+++.+.+... +++.
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~ 450 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVL 450 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEE
Confidence 34678999999999998865554444211000 0 00113457999998 66779999999998753 5665
Q ss_pred EEEcCCChH-HHHHHHhcCCcEEEeCHHHHHHHHhhc--------------ccc----cc--ceeEEEEcccchhccCCC
Q 003887 331 AVYGGMSKL-DQFKELKAGCEIVIATPGRLIDMLKMK--------------ALT----MS--RVTYLVLDEADRMFDLGF 389 (789)
Q Consensus 331 ~~~gg~~~~-~~~~~l~~~~dIiV~Tp~~L~~~l~~~--------------~~~----l~--~i~~lVlDEah~m~~~~f 389 (789)
.+.|=.... .+-.++ ..+||||+||..|..-+... +.. |- .|=.|+||||+.+-. -
T Consensus 451 ~Y~Girk~~~~~~~el-~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--s 527 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSPFEL-LQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--S 527 (1394)
T ss_pred EEechhhhcccCchhh-hccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--h
Confidence 555422111 111222 34999999999997666332 111 11 123489999997654 2
Q ss_pred hHHHHHHHhhcCCCceEEEEeccCcHHHHHH
Q 003887 390 EPQIRSIVGQIRPDRQTLLFSATMPRKVEKL 420 (789)
Q Consensus 390 ~~~i~~il~~~~~~~q~ll~SATl~~~v~~l 420 (789)
......++..++ ....-.+|.|+-..+..+
T Consensus 528 sS~~a~M~~rL~-~in~W~VTGTPiq~Iddl 557 (1394)
T KOG0298|consen 528 SSAAAEMVRRLH-AINRWCVTGTPIQKIDDL 557 (1394)
T ss_pred HHHHHHHHHHhh-hhceeeecCCchhhhhhh
Confidence 344445554443 344567899965545444
No 200
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.96 E-value=0.0063 Score=75.08 Aligned_cols=124 Identities=19% Similarity=0.139 Sum_probs=77.9
Q ss_pred CCCcHHHHHHHHHHHcCCC-EEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhh
Q 003887 246 EKPTSIQCQALPIILSGRD-IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~grd-vl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~ 324 (789)
..+++-|.+++..++.+++ +++.+..|+|||.+ +-. +..++. ..+..+++++||--.|..+.+ .
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~-~~~~~e------~~G~~V~~~ApTGkAA~~L~e-------~ 409 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGV-AREAWE------AAGYEVRGAALSGIAAENLEG-------G 409 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHH-HHHHHH------HcCCeEEEecCcHHHHHHHhh-------c
Confidence 3699999999999998765 67899999999975 333 333332 236779999999776654321 1
Q ss_pred cCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhc-CCC
Q 003887 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPD 403 (789)
Q Consensus 325 ~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~-~~~ 403 (789)
.++.. .|..+|+.-.......+...++||||||-++-. .++..++... +..
T Consensus 410 tGi~a------------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~----~~m~~LL~~a~~~g 461 (988)
T PRK13889 410 SGIAS------------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGT----RQLERVLSHAADAG 461 (988)
T ss_pred cCcch------------------------hhHHHHHhhhcccccccccCcEEEEECcccCCH----HHHHHHHHhhhhCC
Confidence 12211 122222211122233466778999999996543 3455555543 456
Q ss_pred ceEEEEecc
Q 003887 404 RQTLLFSAT 412 (789)
Q Consensus 404 ~q~ll~SAT 412 (789)
.++|++.=+
T Consensus 462 arvVLVGD~ 470 (988)
T PRK13889 462 AKVVLVGDP 470 (988)
T ss_pred CEEEEECCH
Confidence 778887666
No 201
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.93 E-value=0.0029 Score=59.01 Aligned_cols=17 Identities=35% Similarity=0.393 Sum_probs=12.0
Q ss_pred CCCEEEEccCCChhhHH
Q 003887 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvl~~a~TGsGKTla 278 (789)
++.+++.|++|+|||.+
T Consensus 4 ~~~~~i~G~~G~GKT~~ 20 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTL 20 (131)
T ss_dssp ---EEEEE-TTSSHHHH
T ss_pred CcccEEEcCCCCCHHHH
Confidence 45688999999999986
No 202
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.85 E-value=0.083 Score=70.46 Aligned_cols=236 Identities=15% Similarity=0.194 Sum_probs=127.7
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhh
Q 003887 247 KPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (789)
Q Consensus 247 ~ptpiQ~~ai~~il~g--rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~ 324 (789)
.+++-|.+++..++.. +-+++.+..|+|||.+ +-.+..++. ..|..+++++||-.-+..+.+.+...+.
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~--l~~l~~~~~------~~G~~V~~lAPTgrAA~~L~e~~g~~A~- 499 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI--AQLLLHLAS------EQGYEIQIITAGSLSAQELRQKIPRLAS- 499 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH--HHHHHHHHH------hcCCeEEEEeCCHHHHHHHHHHhcchhh-
Confidence 5889999999998876 4578899999999965 334444433 2367799999998877766544322110
Q ss_pred cCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhc-CCC
Q 003887 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPD 403 (789)
Q Consensus 325 ~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~-~~~ 403 (789)
.....+..+.. .....|...|+ .....+...++||||||-++- ...+..++... +..
T Consensus 500 ------------Ti~~~l~~l~~--~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~~g 557 (1960)
T TIGR02760 500 ------------TFITWVKNLFN--DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQHN 557 (1960)
T ss_pred ------------hHHHHHHhhcc--cccchhHHHhh----cccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhhcC
Confidence 00111111111 11122333333 223345678899999999654 34566677655 467
Q ss_pred ceEEEEecc--CcH----HHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHHHHhcCCCC-CCCcEEEE
Q 003887 404 RQTLLFSAT--MPR----KVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVF 476 (789)
Q Consensus 404 ~q~ll~SAT--l~~----~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF 476 (789)
.++|++.-+ ++. .+..++... ....+...........+ . .....+..+...+.+.+..+. ....++|+
T Consensus 558 arvVlvGD~~QL~sV~aG~~f~~L~~~--gv~t~~l~~i~rq~~~v--~-i~~~~~~~r~~~ia~~y~~L~~~r~~tliv 632 (1960)
T TIGR02760 558 SKLILLNDSAQRQGMSAGSAIDLLKEG--GVTTYAWVDTKQQKASV--E-ISEAVDKLRVDYIASAWLDLTPDRQNSQVL 632 (1960)
T ss_pred CEEEEEcChhhcCccccchHHHHHHHC--CCcEEEeecccccCcce--e-eeccCchHHHHHHHHHHHhcccccCceEEE
Confidence 889988776 322 222222221 11111111111111111 1 111223344445555444433 33368999
Q ss_pred ecccccHHHHHHHHHH----cC------Cceeecc-CCCCHHHHHHHHHHhhcC
Q 003887 477 ASKKTTVDEIESQLAQ----KG------FKAAALH-GDKDQASRMEILQKFKSG 519 (789)
Q Consensus 477 ~~s~~~a~~l~~~L~~----~g------~~v~~lh-g~~~~~eR~~~l~~F~~G 519 (789)
..+..+...|...++. .| +.+..|. -.++..++... ..|+.|
T Consensus 633 ~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~G 685 (1960)
T TIGR02760 633 ATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQG 685 (1960)
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCC
Confidence 9998887777666543 22 2233332 35677777643 555554
No 203
>PRK04296 thymidine kinase; Provisional
Probab=96.82 E-value=0.0024 Score=64.26 Aligned_cols=108 Identities=12% Similarity=0.170 Sum_probs=58.3
Q ss_pred CEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCc---HHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHH
Q 003887 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT---RELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (789)
Q Consensus 264 dvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PT---reLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~ 340 (789)
=.++.+++|+|||...+ -++..+.. .+.+++|+-|. +....+ ++...++....
T Consensus 4 i~litG~~GsGKTT~~l-~~~~~~~~-------~g~~v~i~k~~~d~~~~~~~-------i~~~lg~~~~~--------- 59 (190)
T PRK04296 4 LEFIYGAMNSGKSTELL-QRAYNYEE-------RGMKVLVFKPAIDDRYGEGK-------VVSRIGLSREA--------- 59 (190)
T ss_pred EEEEECCCCCHHHHHHH-HHHHHHHH-------cCCeEEEEeccccccccCCc-------EecCCCCcccc---------
Confidence 46789999999998643 33333322 35668888663 222111 11111211110
Q ss_pred HHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEecc
Q 003887 341 QFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT 412 (789)
Q Consensus 341 ~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT 412 (789)
+.+..+..++..+.. .-..+++|||||+|.+- ..++..++..+.+.-..+++++-
T Consensus 60 ----------~~~~~~~~~~~~~~~---~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 60 ----------IPVSSDTDIFELIEE---EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred ----------eEeCChHHHHHHHHh---hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEec
Confidence 123444555555443 23467899999998632 34466677665544445555544
No 204
>PRK14974 cell division protein FtsY; Provisional
Probab=96.81 E-value=0.012 Score=64.40 Aligned_cols=132 Identities=22% Similarity=0.278 Sum_probs=74.9
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcC-c--HHHHHHHHHHHHHHhhhcCcEEEEEEcCCChH
Q 003887 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP-T--RELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (789)
Q Consensus 263 rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~P-T--reLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~ 339 (789)
.-+++++++|+|||.+ +..+.+.+.. .+.+++++.. | .....|+ +.++...++.+.....+....
T Consensus 141 ~vi~~~G~~GvGKTTt--iakLA~~l~~------~g~~V~li~~Dt~R~~a~eqL----~~~a~~lgv~v~~~~~g~dp~ 208 (336)
T PRK14974 141 VVIVFVGVNGTGKTTT--IAKLAYYLKK------NGFSVVIAAGDTFRAGAIEQL----EEHAERLGVKVIKHKYGADPA 208 (336)
T ss_pred eEEEEEcCCCCCHHHH--HHHHHHHHHH------cCCeEEEecCCcCcHHHHHHH----HHHHHHcCCceecccCCCCHH
Confidence 3477899999999986 2233333322 2344555543 2 2334454 334444465544322221111
Q ss_pred HHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhc-cCCChHHHHHHHhhcCCCceEEEEeccCcHHHH
Q 003887 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF-DLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVE 418 (789)
Q Consensus 340 ~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~-~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~ 418 (789)
.. +.+.+... ....+++|+||.+.++. +......+..+...+.++..+++++||...+..
T Consensus 209 ~v-----------------~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~ 269 (336)
T PRK14974 209 AV-----------------AYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAV 269 (336)
T ss_pred HH-----------------HHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHH
Confidence 10 11222111 12356799999999875 334556677777777888889999999877766
Q ss_pred HHHHHHh
Q 003887 419 KLAREIL 425 (789)
Q Consensus 419 ~l~~~~l 425 (789)
..++.|.
T Consensus 270 ~~a~~f~ 276 (336)
T PRK14974 270 EQAREFN 276 (336)
T ss_pred HHHHHHH
Confidence 6666664
No 205
>PRK08181 transposase; Validated
Probab=96.81 E-value=0.014 Score=61.92 Aligned_cols=111 Identities=12% Similarity=0.187 Sum_probs=60.5
Q ss_pred HHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCC
Q 003887 257 PIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGM 336 (789)
Q Consensus 257 ~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~ 336 (789)
.++-.++++++++++|+|||... ..+..+++.. +..+++ ++..+|+.++..... .
T Consensus 101 ~~~~~~~nlll~Gp~GtGKTHLa-~Aia~~a~~~-------g~~v~f-~~~~~L~~~l~~a~~------~---------- 155 (269)
T PRK08181 101 SWLAKGANLLLFGPPGGGKSHLA-AAIGLALIEN-------GWRVLF-TRTTDLVQKLQVARR------E---------- 155 (269)
T ss_pred HHHhcCceEEEEecCCCcHHHHH-HHHHHHHHHc-------CCceee-eeHHHHHHHHHHHHh------C----------
Confidence 35667889999999999999642 2333333332 334444 455566655432100 0
Q ss_pred ChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCC-hHHHHHHHhhcCCCceEEEEeccCcH
Q 003887 337 SKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGF-EPQIRSIVGQIRPDRQTLLFSATMPR 415 (789)
Q Consensus 337 ~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f-~~~i~~il~~~~~~~q~ll~SATl~~ 415 (789)
.+...++. .+.++++|||||.+.+....+ ...+..+++.......+|+.|-..+.
T Consensus 156 -----------------~~~~~~l~-------~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~ 211 (269)
T PRK08181 156 -----------------LQLESAIA-------KLDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFG 211 (269)
T ss_pred -----------------CcHHHHHH-------HHhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHH
Confidence 01111222 234678999999997643322 23455666654334455555555444
Q ss_pred H
Q 003887 416 K 416 (789)
Q Consensus 416 ~ 416 (789)
.
T Consensus 212 ~ 212 (269)
T PRK08181 212 E 212 (269)
T ss_pred H
Confidence 3
No 206
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.68 E-value=0.0098 Score=56.78 Aligned_cols=67 Identities=16% Similarity=0.283 Sum_probs=46.9
Q ss_pred HHHHHHHHHHcCC------ceeeccCCCCHHHHHHHHHHhhcCC-ccEEEeehhhhccCCCCC--ccEEEEEcCCC
Q 003887 483 VDEIESQLAQKGF------KAAALHGDKDQASRMEILQKFKSGV-YHVLIATDVAARGLDIKS--IKSVVNFDIAR 549 (789)
Q Consensus 483 a~~l~~~L~~~g~------~v~~lhg~~~~~eR~~~l~~F~~G~-~~VLVaT~v~~~GlDI~~--v~~VI~~d~p~ 549 (789)
.+.+...+...+. ...++....+..+...+++.|+... ..||++|..+.+|+|+++ ++.||...+|.
T Consensus 4 m~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 4 MESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred HHHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 3445555555433 2334444566667788999998754 379999988999999998 67888877663
No 207
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.64 E-value=0.018 Score=64.19 Aligned_cols=79 Identities=16% Similarity=0.221 Sum_probs=49.7
Q ss_pred CcEEEEecccccHHHHHHHHHHcCCc------eeeccCCCCHHHHHHHHHHhh----cCCccEEEee--hhhhccCCCCC
Q 003887 471 GDVLVFASKKTTVDEIESQLAQKGFK------AAALHGDKDQASRMEILQKFK----SGVYHVLIAT--DVAARGLDIKS 538 (789)
Q Consensus 471 ~kvLVF~~s~~~a~~l~~~L~~~g~~------v~~lhg~~~~~eR~~~l~~F~----~G~~~VLVaT--~v~~~GlDI~~ 538 (789)
+.+++|.++.-..+.+.......|+- -.++-+.-+..+-.-++...+ +|+--||++. .-.++|+|+.+
T Consensus 531 dG~v~ff~sylYmesiv~~w~~~gil~ei~k~KL~fIetpD~~ETs~al~ny~~aC~~gRGavl~sVargkVsEgidF~h 610 (755)
T KOG1131|consen 531 DGIVCFFPSYLYMESIVSRWYEQGILDEIMKYKLLFIETPDFRETSLALANYRYACDNGRGAVLLSVARGKVSEGIDFDH 610 (755)
T ss_pred CceEEEEehHHHHHHHHHHHHHHhHHHHHhhCceEEEeCCchhhhHHHHHHHHHHhcCCCCceEEEEecCccccCccccc
Confidence 46788888887777776665554431 122333344444455555553 4666666655 55678999987
Q ss_pred cc--EEEEEcCCC
Q 003887 539 IK--SVVNFDIAR 549 (789)
Q Consensus 539 v~--~VI~~d~p~ 549 (789)
-. .||++..|.
T Consensus 611 hyGR~ViM~gIP~ 623 (755)
T KOG1131|consen 611 HYGREVIMEGIPY 623 (755)
T ss_pred ccCceEEEEeccc
Confidence 55 899999886
No 208
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.63 E-value=0.075 Score=64.83 Aligned_cols=72 Identities=18% Similarity=0.168 Sum_probs=54.1
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhh
Q 003887 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~ 323 (789)
..|+|-|.+++.. ....++|.|..|||||.+ ++.-+.+++..... ...++|+|+-|+..|..+.+.+.+++.
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~-l~~ria~Li~~~~i---~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRV-LTHRIAHLIAEKNV---APWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHH-HHHHHHHHHHcCCC---CHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 4588999999865 346799999999999987 55555666543211 123589999999999999888887754
No 209
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.61 E-value=0.0053 Score=66.29 Aligned_cols=123 Identities=15% Similarity=0.067 Sum_probs=75.1
Q ss_pred CcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCc
Q 003887 248 PTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGI 327 (789)
Q Consensus 248 ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i 327 (789)
+++-|.+++.+ ....++|.|..|||||.+.+. -+.+++.... .....+|+|++|+..|..+.+.+...+.....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~-ri~~ll~~~~---~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~ 74 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLE-RIAYLLYEGG---VPPERILVLTFTNAAAQEMRERIRELLEEEQQ 74 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHH-HHHHHHHTSS---STGGGEEEEESSHHHHHHHHHHHHHHHHHCCH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHH-HHHHhhcccc---CChHHheecccCHHHHHHHHHHHHHhcCcccc
Confidence 57889999988 567899999999999997444 3444444322 12345999999999999999999987654321
Q ss_pred EEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhcccccc--ceeEEEEcccc
Q 003887 328 RVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMS--RVTYLVLDEAD 382 (789)
Q Consensus 328 ~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~--~i~~lVlDEah 382 (789)
.. ............-..+.|+|...+...+-+...... .-.+-|+|+..
T Consensus 75 ~~------~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 75 ES------SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp CC------TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cc------cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 10 000011122223467889998888664433222211 22456777776
No 210
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.58 E-value=0.03 Score=69.64 Aligned_cols=137 Identities=18% Similarity=0.119 Sum_probs=83.0
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHHc-CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHH
Q 003887 232 FSTQLMHAISKQGYEKPTSIQCQALPIILS-GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTREL 310 (789)
Q Consensus 232 l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~-grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreL 310 (789)
+++..+......+ ..+++-|.+++..+.. .+-+++.+..|+|||.+ +-++. .++. ..|..++.++||---
T Consensus 367 v~~~~l~a~~~~~-~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~-~~~e------~~G~~V~g~ApTgkA 437 (1102)
T PRK13826 367 VREAVLAATFARH-ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAR-EAWE------AAGYRVVGGALAGKA 437 (1102)
T ss_pred CCHHHHHHHHhcC-CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHH-HHHH------HcCCeEEEEcCcHHH
Confidence 3444444433332 4699999999998865 45578899999999975 33333 3332 236778999999777
Q ss_pred HHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCCh
Q 003887 311 AHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFE 390 (789)
Q Consensus 311 a~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~ 390 (789)
|..+.+ . .++... |..+|+.........+..-++||||||-++- .
T Consensus 438 A~~L~e----~---~Gi~a~------------------------TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~----~ 482 (1102)
T PRK13826 438 AEGLEK----E---AGIQSR------------------------TLSSWELRWNQGRDQLDNKTVFVLDEAGMVA----S 482 (1102)
T ss_pred HHHHHH----h---hCCCee------------------------eHHHHHhhhccCccCCCCCcEEEEECcccCC----H
Confidence 654422 1 233322 2122211111122346667899999999653 3
Q ss_pred HHHHHHHhhcC-CCceEEEEecc
Q 003887 391 PQIRSIVGQIR-PDRQTLLFSAT 412 (789)
Q Consensus 391 ~~i~~il~~~~-~~~q~ll~SAT 412 (789)
.++..++..+. ...++|++.=+
T Consensus 483 ~~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 483 RQMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHHHHHHhcCCEEEEECCH
Confidence 45556666654 56778887666
No 211
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.54 E-value=0.018 Score=61.99 Aligned_cols=143 Identities=15% Similarity=0.228 Sum_probs=85.6
Q ss_pred CCCCCcHHHHHHHHHHHcCC--CEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHH-------
Q 003887 244 GYEKPTSIQCQALPIILSGR--DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI------- 314 (789)
Q Consensus 244 g~~~ptpiQ~~ai~~il~gr--dvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi------- 314 (789)
|+......|.-|+..++.-. =|.+.++.|+|||+.++.+.|...+.++.. .++||.=|+..+-..|
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y-----~KiiVtRp~vpvG~dIGfLPG~e 299 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRY-----RKIIVTRPTVPVGEDIGFLPGTE 299 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhh-----ceEEEecCCcCcccccCcCCCch
Confidence 56666678888888888653 467789999999999999999988876433 3467766765544322
Q ss_pred HHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccc----------eeEEEEcccchh
Q 003887 315 YLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSR----------VTYLVLDEADRM 384 (789)
Q Consensus 315 ~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~----------i~~lVlDEah~m 384 (789)
.+.+.-|+.. ..+....+.. .-=|+.+.|..++.+..+.+.. =.|||||||+.+
T Consensus 300 EeKm~PWmq~-------------i~DnLE~L~~---~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNL 363 (436)
T COG1875 300 EEKMGPWMQA-------------IFDNLEVLFS---PNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNL 363 (436)
T ss_pred hhhccchHHH-------------HHhHHHHHhc---ccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhcc
Confidence 0111111110 0111111211 1112244444444443332211 257999999985
Q ss_pred ccCCChHHHHHHHhhcCCCceEEEEec
Q 003887 385 FDLGFEPQIRSIVGQIRPDRQTLLFSA 411 (789)
Q Consensus 385 ~~~~f~~~i~~il~~~~~~~q~ll~SA 411 (789)
- ..++..|+.++.+..+++++.-
T Consensus 364 T----pheikTiltR~G~GsKIVl~gd 386 (436)
T COG1875 364 T----PHELKTILTRAGEGSKIVLTGD 386 (436)
T ss_pred C----HHHHHHHHHhccCCCEEEEcCC
Confidence 4 4578899999988888877643
No 212
>PRK06526 transposase; Provisional
Probab=96.52 E-value=0.01 Score=62.52 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=20.5
Q ss_pred HHHHHHcCCCEEEEccCCChhhHHH
Q 003887 255 ALPIILSGRDIIGIAKTGSGKTAAF 279 (789)
Q Consensus 255 ai~~il~grdvl~~a~TGsGKTla~ 279 (789)
...++..++++++++|+|+|||...
T Consensus 91 ~~~fi~~~~nlll~Gp~GtGKThLa 115 (254)
T PRK06526 91 TLDFVTGKENVVFLGPPGTGKTHLA 115 (254)
T ss_pred cCchhhcCceEEEEeCCCCchHHHH
Confidence 3456667889999999999999763
No 213
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.49 E-value=0.0051 Score=68.48 Aligned_cols=60 Identities=22% Similarity=0.320 Sum_probs=45.3
Q ss_pred CCcHHHHHHHHHH------HcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHH
Q 003887 247 KPTSIQCQALPII------LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI 314 (789)
Q Consensus 247 ~ptpiQ~~ai~~i------l~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi 314 (789)
+|++-|+.++..+ ..+..+++.++-|+|||. ++-.+.+.+.. .+..+++++||-..|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~--l~~~i~~~~~~------~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSF--LIKAIIDYLRS------RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhH--HHHHHHHHhcc------ccceEEEecchHHHHHhc
Confidence 3677899998888 577889999999999995 45455444332 356799999998777655
No 214
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.47 E-value=0.014 Score=64.67 Aligned_cols=133 Identities=20% Similarity=0.157 Sum_probs=66.8
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHH
Q 003887 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~ 340 (789)
.+..+++++|||+|||+.....+...+... ...++.++. +...-.--.+.++.|+...++.+..+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~------G~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~~~~------- 201 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRF------GASKVALLT-TDSYRIGGHEQLRIFGKILGVPVHAVK------- 201 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc------CCCeEEEEe-cccccccHHHHHHHHHHHcCCceEecC-------
Confidence 467889999999999986433322222221 112333332 222211123456666665565543332
Q ss_pred HHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCC-ChHHHHHHHhhcCCCceEEEEeccCcHH-HH
Q 003887 341 QFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG-FEPQIRSIVGQIRPDRQTLLFSATMPRK-VE 418 (789)
Q Consensus 341 ~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~-f~~~i~~il~~~~~~~q~ll~SATl~~~-v~ 418 (789)
++..+...+. .+.+.++|+||.+=+..... ...++..+.....+...+++++||.... +.
T Consensus 202 --------------~~~~l~~~l~----~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ 263 (374)
T PRK14722 202 --------------DGGDLQLALA----ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLN 263 (374)
T ss_pred --------------CcccHHHHHH----HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHH
Confidence 2222322222 24566889999997542211 1222222222223345578899997544 44
Q ss_pred HHHHHHh
Q 003887 419 KLAREIL 425 (789)
Q Consensus 419 ~l~~~~l 425 (789)
+.+..|.
T Consensus 264 evi~~f~ 270 (374)
T PRK14722 264 EVVQAYR 270 (374)
T ss_pred HHHHHHH
Confidence 5555554
No 215
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.44 E-value=0.035 Score=61.96 Aligned_cols=132 Identities=17% Similarity=0.170 Sum_probs=71.8
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCc-HHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHH
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT-RELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PT-reLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~ 340 (789)
.+.++++++||+|||.+..-.+ .++.... .......+||-+-| |.-+.. .++.++...++.+.+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA-~~~~~~~--~~~g~~V~lit~Dt~R~aa~e---QL~~~a~~lgvpv~~~-------- 239 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLA-AIYGINS--DDKSLNIKIITIDNYRIGAKK---QIQTYGDIMGIPVKAI-------- 239 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHH-HHHHhhh--ccCCCeEEEEeccCccHHHHH---HHHHHhhcCCcceEee--------
Confidence 3568899999999998743222 2221110 00123334554544 333332 2666665555544222
Q ss_pred HHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCC-ChHHHHHHHhhcCCC-ceEEEEeccCc-HHH
Q 003887 341 QFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG-FEPQIRSIVGQIRPD-RQTLLFSATMP-RKV 417 (789)
Q Consensus 341 ~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~-f~~~i~~il~~~~~~-~q~ll~SATl~-~~v 417 (789)
-++..+...+. .+..+++||||++.++.... ....+..++..+.++ ..++.+|||.. ..+
T Consensus 240 -------------~~~~~l~~~L~----~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~ 302 (388)
T PRK12723 240 -------------ESFKDLKEEIT----QSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDV 302 (388)
T ss_pred -------------CcHHHHHHHHH----HhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHH
Confidence 23444444443 24578999999999865311 123445555555443 46788999975 445
Q ss_pred HHHHHHH
Q 003887 418 EKLAREI 424 (789)
Q Consensus 418 ~~l~~~~ 424 (789)
.+.+..|
T Consensus 303 ~~~~~~~ 309 (388)
T PRK12723 303 KEIFHQF 309 (388)
T ss_pred HHHHHHh
Confidence 5555555
No 216
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.44 E-value=0.012 Score=56.18 Aligned_cols=67 Identities=18% Similarity=0.348 Sum_probs=44.6
Q ss_pred HHHHHHHHHHcCC---ceeeccCCCCHHHHHHHHHHhhcCCc---cEEEeehh--hhccCCCCC--ccEEEEEcCCC
Q 003887 483 VDEIESQLAQKGF---KAAALHGDKDQASRMEILQKFKSGVY---HVLIATDV--AARGLDIKS--IKSVVNFDIAR 549 (789)
Q Consensus 483 a~~l~~~L~~~g~---~v~~lhg~~~~~eR~~~l~~F~~G~~---~VLVaT~v--~~~GlDI~~--v~~VI~~d~p~ 549 (789)
.+.+.+.+.+.+. ...++.......+...+++.|++... .||+++.- +.+|+|+++ ++.||...+|.
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 4556666655433 12233333333455788889987543 69998876 899999998 67899888773
No 217
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.39 E-value=0.0074 Score=62.92 Aligned_cols=86 Identities=24% Similarity=0.373 Sum_probs=66.3
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcC-CChHHHHHHHhc-CCcEEEeCHHHHHHHHhhccccccce
Q 003887 296 EEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGG-MSKLDQFKELKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (789)
Q Consensus 296 ~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg-~~~~~~~~~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i 373 (789)
...|.+|||+..-.=|..+.+.++.|.. .+..|+-++.- ....+++..+.. .++|.||||+||..+++.+.+.+..+
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 4579999999987777778777777731 12344434433 255677777764 68999999999999999999999999
Q ss_pred eEEEEcccc
Q 003887 374 TYLVLDEAD 382 (789)
Q Consensus 374 ~~lVlDEah 382 (789)
.+||||--|
T Consensus 203 ~~ivlD~s~ 211 (252)
T PF14617_consen 203 KRIVLDWSY 211 (252)
T ss_pred eEEEEcCCc
Confidence 999999876
No 218
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.37 E-value=0.038 Score=51.65 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=15.1
Q ss_pred CCCEEEEccCCChhhHH
Q 003887 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvl~~a~TGsGKTla 278 (789)
++.+++.+++|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 67899999999999964
No 219
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.19 E-value=0.38 Score=53.87 Aligned_cols=71 Identities=14% Similarity=0.305 Sum_probs=54.0
Q ss_pred CCcE-EEEecccccHHHHHHHHHH----cCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeeh--hhh----ccCCCCC
Q 003887 470 DGDV-LVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD--VAA----RGLDIKS 538 (789)
Q Consensus 470 ~~kv-LVF~~s~~~a~~l~~~L~~----~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~--v~~----~GlDI~~ 538 (789)
++++ ||.|++++.|..+....++ .++.++++||+.+..++...++ . ..-|+|||. ++. .++|+..
T Consensus 295 ~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk---~-g~EivVaTPgRlid~VkmKatn~~r 370 (731)
T KOG0339|consen 295 EGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK---E-GAEIVVATPGRLIDMVKMKATNLSR 370 (731)
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh---c-CCeEEEechHHHHHHHHhhccccee
Confidence 4565 6778999988887666554 4889999999999888776665 3 367999994 222 6899999
Q ss_pred ccEEEE
Q 003887 539 IKSVVN 544 (789)
Q Consensus 539 v~~VI~ 544 (789)
++++|+
T Consensus 371 vS~LV~ 376 (731)
T KOG0339|consen 371 VSYLVL 376 (731)
T ss_pred eeEEEE
Confidence 998875
No 220
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.11 E-value=0.037 Score=55.93 Aligned_cols=131 Identities=20% Similarity=0.232 Sum_probs=71.9
Q ss_pred EEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCc-HHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHH
Q 003887 265 IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT-RELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK 343 (789)
Q Consensus 265 vl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PT-reLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~ 343 (789)
+++++|||+|||... .-+..++..+ ....+||.+-| |.=| .++++.++...++.+....-.......
T Consensus 4 i~lvGptGvGKTTt~-aKLAa~~~~~------~~~v~lis~D~~R~ga---~eQL~~~a~~l~vp~~~~~~~~~~~~~-- 71 (196)
T PF00448_consen 4 IALVGPTGVGKTTTI-AKLAARLKLK------GKKVALISADTYRIGA---VEQLKTYAEILGVPFYVARTESDPAEI-- 71 (196)
T ss_dssp EEEEESTTSSHHHHH-HHHHHHHHHT------T--EEEEEESTSSTHH---HHHHHHHHHHHTEEEEESSTTSCHHHH--
T ss_pred EEEECCCCCchHhHH-HHHHHHHhhc------cccceeecCCCCCccH---HHHHHHHHHHhccccchhhcchhhHHH--
Confidence 678999999999873 3333333221 23334554443 3333 345777777667766543322211111
Q ss_pred HHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhcc-CCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHH
Q 003887 344 ELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAR 422 (789)
Q Consensus 344 ~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~-~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~ 422 (789)
+...++. ....++++|+||=+-+... ......+..++..+.+..-++.++||........+.
T Consensus 72 ---------------~~~~l~~--~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~ 134 (196)
T PF00448_consen 72 ---------------AREALEK--FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQAL 134 (196)
T ss_dssp ---------------HHHHHHH--HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHH
T ss_pred ---------------HHHHHHH--HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHH
Confidence 1122221 1234577899999875432 223456667777777778889999998765544444
Q ss_pred HH
Q 003887 423 EI 424 (789)
Q Consensus 423 ~~ 424 (789)
.+
T Consensus 135 ~~ 136 (196)
T PF00448_consen 135 AF 136 (196)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 221
>PRK06921 hypothetical protein; Provisional
Probab=96.02 E-value=0.071 Score=56.62 Aligned_cols=46 Identities=22% Similarity=0.227 Sum_probs=27.7
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHH
Q 003887 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI 314 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi 314 (789)
.+..+++.+++|+|||.. +.++...+... .+..++++ +..+|..++
T Consensus 116 ~~~~l~l~G~~G~GKThL-a~aia~~l~~~------~g~~v~y~-~~~~l~~~l 161 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHL-LTAAANELMRK------KGVPVLYF-PFVEGFGDL 161 (266)
T ss_pred CCCeEEEECCCCCcHHHH-HHHHHHHHhhh------cCceEEEE-EHHHHHHHH
Confidence 357799999999999964 33444444332 13445554 444555443
No 222
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.99 E-value=0.014 Score=54.03 Aligned_cols=17 Identities=41% Similarity=0.589 Sum_probs=14.9
Q ss_pred CCCEEEEccCCChhhHH
Q 003887 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvl~~a~TGsGKTla 278 (789)
+..+++.+++|+|||..
T Consensus 2 ~~~~~l~G~~G~GKTtl 18 (148)
T smart00382 2 GEVILIVGPPGSGKTTL 18 (148)
T ss_pred CCEEEEECCCCCcHHHH
Confidence 46789999999999975
No 223
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.85 E-value=0.17 Score=57.38 Aligned_cols=129 Identities=21% Similarity=0.267 Sum_probs=67.4
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHh-cCcccccCCCCEEEEEcCc-HHHHHHHHHHHHHHhhhcCcEEEEEEcCCChH
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIM-DQPELQKEEGPIGVICAPT-RELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~-~~~~~~~~~gp~vLIl~PT-reLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~ 339 (789)
++.+++++|||+|||...... ..++. .. .....+||-+-+ |.-+ .+.++.|+...++.+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kL-A~~~~~~~-----~g~~V~li~~D~~r~~a---~eqL~~~a~~~~vp~~~-------- 283 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKL-AARYALLY-----GKKKVALITLDTYRIGA---VEQLKTYAKIMGIPVEV-------- 283 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHH-HHHHHHhc-----CCCeEEEEECCccHHHH---HHHHHHHHHHhCCceEc--------
Confidence 567889999999999863322 22221 11 112233444433 3222 23455555444443322
Q ss_pred HHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhcc-CCChHHHHHHHh-hcCCCceEEEEeccCcH-H
Q 003887 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD-LGFEPQIRSIVG-QIRPDRQTLLFSATMPR-K 416 (789)
Q Consensus 340 ~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~-~~f~~~i~~il~-~~~~~~q~ll~SATl~~-~ 416 (789)
+.++..|...+. .+..+++||||-+-+... ......+..++. ...+....++++||... .
T Consensus 284 -------------~~~~~~l~~~l~----~~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~ 346 (424)
T PRK05703 284 -------------VYDPKELAKALE----QLRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYED 346 (424)
T ss_pred -------------cCCHHhHHHHHH----HhCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHH
Confidence 234444444443 234679999999865321 112234445555 22344567889998764 4
Q ss_pred HHHHHHHH
Q 003887 417 VEKLAREI 424 (789)
Q Consensus 417 v~~l~~~~ 424 (789)
+..++..|
T Consensus 347 l~~~~~~f 354 (424)
T PRK05703 347 LKDIYKHF 354 (424)
T ss_pred HHHHHHHh
Confidence 55555555
No 224
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.83 E-value=0.11 Score=54.44 Aligned_cols=108 Identities=19% Similarity=0.252 Sum_probs=58.3
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHH
Q 003887 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (789)
Q Consensus 263 rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~ 342 (789)
..+++.+++|+|||.. +..+..++... +..++++ +..+|...+...+. . ..
T Consensus 100 ~~~~l~G~~GtGKThL-a~aia~~l~~~-------g~~v~~i-t~~~l~~~l~~~~~---~----------~~------- 150 (244)
T PRK07952 100 ASFIFSGKPGTGKNHL-AAAICNELLLR-------GKSVLII-TVADIMSAMKDTFS---N----------SE------- 150 (244)
T ss_pred ceEEEECCCCCCHHHH-HHHHHHHHHhc-------CCeEEEE-EHHHHHHHHHHHHh---h----------cc-------
Confidence 4689999999999975 34455555432 4445554 44444433222110 0 00
Q ss_pred HHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHH-HHHHHhh-cCCCceEEEEeccCcHHH
Q 003887 343 KELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQ-IRSIVGQ-IRPDRQTLLFSATMPRKV 417 (789)
Q Consensus 343 ~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~-i~~il~~-~~~~~q~ll~SATl~~~v 417 (789)
.+...++.. +..+++|||||++......|... +..|+.. +.....+++.|---+..+
T Consensus 151 -----------~~~~~~l~~-------l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l 209 (244)
T PRK07952 151 -----------TSEEQLLND-------LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEM 209 (244)
T ss_pred -----------ccHHHHHHH-------hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHH
Confidence 122222222 45788999999997665445443 3345543 233456666665544443
No 225
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.83 E-value=0.12 Score=57.27 Aligned_cols=129 Identities=21% Similarity=0.314 Sum_probs=69.5
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEE-EEEcC-cH-HHHHHHHHHHHHHhhhcCcEEEEEEcCCChH
Q 003887 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIG-VICAP-TR-ELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (789)
Q Consensus 263 rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~v-LIl~P-Tr-eLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~ 339 (789)
+.++++++||+|||...... ...+.. .+.++ +|-+- .| ..+.| ++.++...++.+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKL-A~~L~~-------~GkkVglI~aDt~RiaAvEQ----Lk~yae~lgipv~--------- 300 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKM-AWQFHG-------KKKTVGFITTDHSRIGTVQQ----LQDYVKTIGFEVI--------- 300 (436)
T ss_pred cEEEEECCCCCcHHHHHHHH-HHHHHH-------cCCcEEEEecCCcchHHHHH----HHHHhhhcCCcEE---------
Confidence 56789999999999863332 223322 23334 44442 33 23333 3344433333322
Q ss_pred HHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccC-CChHHHHHHHhhcCCCceEEEEeccCc-HHH
Q 003887 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMP-RKV 417 (789)
Q Consensus 340 ~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~-~f~~~i~~il~~~~~~~q~ll~SATl~-~~v 417 (789)
++.+|..|.+.+..-. ...++++|+||-+=+.... .....+..++....+..-++.+|||.. +.+
T Consensus 301 ------------v~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~ 367 (436)
T PRK11889 301 ------------AVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDM 367 (436)
T ss_pred ------------ecCCHHHHHHHHHHHH-hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHH
Confidence 2335666665553211 1125788999998764422 123334455555556656777998754 566
Q ss_pred HHHHHHHh
Q 003887 418 EKLAREIL 425 (789)
Q Consensus 418 ~~l~~~~l 425 (789)
...+..|-
T Consensus 368 ~~i~~~F~ 375 (436)
T PRK11889 368 IEIITNFK 375 (436)
T ss_pred HHHHHHhc
Confidence 66676664
No 226
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.78 E-value=0.02 Score=66.13 Aligned_cols=150 Identities=19% Similarity=0.183 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHc-----C----CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHH
Q 003887 250 SIQCQALPIILS-----G----RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK 320 (789)
Q Consensus 250 piQ~~ai~~il~-----g----rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k 320 (789)
|+|+-.+-.++- + +.+++.-+=+-|||......++.+++-. ...++.+++++++++-|..+++.+..
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~----g~~~~~i~~~A~~~~QA~~~f~~~~~ 76 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD----GEPGAEIYCAANTRDQAKIVFDEAKK 76 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC----CccCceEEEEeCCHHHHHHHHHHHHH
Confidence 678887777762 2 3578888999999986555555555433 23467899999999999999999999
Q ss_pred HhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhh--ccccccceeEEEEcccchhccCCChHHHHHHHh
Q 003887 321 FAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM--KALTMSRVTYLVLDEADRMFDLGFEPQIRSIVG 398 (789)
Q Consensus 321 ~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~--~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~ 398 (789)
+........... . ...... ....|.....+.++..+.. ....=.+.+++|+||+|.+.+......+..-..
T Consensus 77 ~i~~~~~l~~~~-~-----~~~~~~-~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~ 149 (477)
T PF03354_consen 77 MIEASPELRKRK-K-----PKIIKS-NKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMG 149 (477)
T ss_pred HHHhChhhccch-h-----hhhhhh-hceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhc
Confidence 876422111000 0 000000 0122222222222222211 112223578999999998766433444444444
Q ss_pred hcCCCceEEEEec
Q 003887 399 QIRPDRQTLLFSA 411 (789)
Q Consensus 399 ~~~~~~q~ll~SA 411 (789)
. +++.+++++|.
T Consensus 150 ~-r~~pl~~~IST 161 (477)
T PF03354_consen 150 A-RPNPLIIIIST 161 (477)
T ss_pred c-CCCceEEEEeC
Confidence 3 45666666543
No 227
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.78 E-value=0.14 Score=56.69 Aligned_cols=135 Identities=19% Similarity=0.292 Sum_probs=77.7
Q ss_pred HcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChH
Q 003887 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (789)
Q Consensus 260 l~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~ 339 (789)
.+++-+++++|||.|||+.. +=|++.+. ........+||.+-|--... +++++.++..+++.+.+++
T Consensus 201 ~~~~vi~LVGPTGVGKTTTl--AKLAar~~---~~~~~~kVaiITtDtYRIGA--~EQLk~Ya~im~vp~~vv~------ 267 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTL--AKLAARYV---MLKKKKKVAIITTDTYRIGA--VEQLKTYADIMGVPLEVVY------ 267 (407)
T ss_pred ccCcEEEEECCCCCcHHHHH--HHHHHHHH---hhccCcceEEEEeccchhhH--HHHHHHHHHHhCCceEEec------
Confidence 34788999999999999872 22332222 11233455677666644432 4567777777777665443
Q ss_pred HHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhc-cCCChHHHHHHHhhcCCCceEEEEeccCcH-HH
Q 003887 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF-DLGFEPQIRSIVGQIRPDRQTLLFSATMPR-KV 417 (789)
Q Consensus 340 ~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~-~~~f~~~i~~il~~~~~~~q~ll~SATl~~-~v 417 (789)
+|.-|...+. .+.++++|.||=+=+-. |.-...++..++....+.--.|.+|||... .+
T Consensus 268 ---------------~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dl 328 (407)
T COG1419 268 ---------------SPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDL 328 (407)
T ss_pred ---------------CHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHH
Confidence 4444444432 35566777777766421 111234455555555455567889999653 45
Q ss_pred HHHHHHHhC
Q 003887 418 EKLAREILS 426 (789)
Q Consensus 418 ~~l~~~~l~ 426 (789)
.+....|-.
T Consensus 329 kei~~~f~~ 337 (407)
T COG1419 329 KEIIKQFSL 337 (407)
T ss_pred HHHHHHhcc
Confidence 555555543
No 228
>PHA02533 17 large terminase protein; Provisional
Probab=95.74 E-value=0.049 Score=63.44 Aligned_cols=148 Identities=16% Similarity=0.070 Sum_probs=85.9
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003887 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (789)
Q Consensus 247 ~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~ 326 (789)
.|.|+|...+..+..++-.++..+=..|||.+..+.++...+.. .+..+++++|++.-|..+.+.++.......
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~------~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P 132 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN------KDKNVGILAHKASMAAEVLDRTKQAIELLP 132 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC------CCCEEEEEeCCHHHHHHHHHHHHHHHHhCH
Confidence 58899999998876666667777778899987665555544432 255899999999999999888886654321
Q ss_pred --cEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcCC--
Q 003887 327 --IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP-- 402 (789)
Q Consensus 327 --i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~-- 402 (789)
++...... ......+.+|+.|.+.|-. .....=..+.++||||+|.+.+ +...+..+...+..
T Consensus 133 ~l~~~~i~~~----~~~~I~l~NGS~I~~lss~-------~~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg~ 199 (534)
T PHA02533 133 DFLQPGIVEW----NKGSIELENGSKIGAYASS-------PDAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSGR 199 (534)
T ss_pred HHhhcceeec----CccEEEeCCCCEEEEEeCC-------CCccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcCC
Confidence 11100000 0011122455666554421 1111122467899999997644 22333333333332
Q ss_pred CceEEEEeccC
Q 003887 403 DRQTLLFSATM 413 (789)
Q Consensus 403 ~~q~ll~SATl 413 (789)
..+++++|++.
T Consensus 200 ~~r~iiiSTp~ 210 (534)
T PHA02533 200 SSKIIITSTPN 210 (534)
T ss_pred CceEEEEECCC
Confidence 23455666553
No 229
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.64 E-value=0.046 Score=66.49 Aligned_cols=109 Identities=17% Similarity=0.153 Sum_probs=72.7
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003887 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~ 325 (789)
..|+|-|.+++.. ....++|.|..|||||.+ ++.-+.+++..... ....+|+|+.|+..|..+.+.+.++....
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~-L~~Ria~Li~~~~v---~p~~IL~lTFTnkAA~em~~Rl~~~~~~~ 76 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRV-LTHRIAWLLSVENA---SPHSIMAVTFTNKAAAEMRHRIGALLGTS 76 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHcCCC---CHHHeEeeeccHHHHHHHHHHHHHHhccc
Confidence 4589999999864 345899999999999987 55566676653211 23458999999999999998888875310
Q ss_pred CcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhcc---ccccceeEEEEcccch
Q 003887 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKA---LTMSRVTYLVLDEADR 383 (789)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~---~~l~~i~~lVlDEah~ 383 (789)
...+.|+|...|-..+-+.. ..+. -.+-|+|+.+.
T Consensus 77 ----------------------~~~~~i~TfHs~~~~iLr~~~~~~g~~-~~f~i~d~~d~ 114 (715)
T TIGR01075 77 ----------------------ARGMWIGTFHGLAHRLLRAHHLDAGLP-QDFQILDSDDQ 114 (715)
T ss_pred ----------------------ccCcEEEcHHHHHHHHHHHHHHHhCCC-CCCeecCHHHH
Confidence 02467888777754332221 1111 13457787764
No 230
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.59 E-value=0.11 Score=49.94 Aligned_cols=44 Identities=18% Similarity=0.336 Sum_probs=25.5
Q ss_pred ccceeEEEEcccchhccCCC----------hHHHHHHHhhcCCCceEEEEeccC
Q 003887 370 MSRVTYLVLDEADRMFDLGF----------EPQIRSIVGQIRPDRQTLLFSATM 413 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~f----------~~~i~~il~~~~~~~q~ll~SATl 413 (789)
.....+|||||++.+..... ...+..++..++....+++++...
T Consensus 83 ~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~ 136 (165)
T cd01120 83 RGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQV 136 (165)
T ss_pred CCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEec
Confidence 35678999999998754321 234445555554434444444443
No 231
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.55 E-value=0.045 Score=66.61 Aligned_cols=71 Identities=17% Similarity=0.150 Sum_probs=54.4
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHh
Q 003887 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~ 322 (789)
..|+|-|.+++... ...+++.|..|||||.+ ++.-+.+++..... ....+|+|+-|+..|..+.+.+.++.
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~v-l~~Ria~Li~~~~v---~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRV-LVHRIAWLMQVENA---SPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHH-HHHHHHHHHHcCCC---ChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 45899999998643 45899999999999987 55556666643211 23458999999999999998888875
No 232
>PRK05642 DNA replication initiation factor; Validated
Probab=95.45 E-value=0.05 Score=56.67 Aligned_cols=45 Identities=18% Similarity=0.334 Sum_probs=29.5
Q ss_pred cceeEEEEcccchhccC-CChHHHHHHHhhcCCCceEEEEeccCcH
Q 003887 371 SRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMPR 415 (789)
Q Consensus 371 ~~i~~lVlDEah~m~~~-~f~~~i~~il~~~~~~~q~ll~SATl~~ 415 (789)
..+++||||++|.+... .+...+..+++.+......++++++.++
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 35678999999977533 3455677788776654445666666543
No 233
>PRK08116 hypothetical protein; Validated
Probab=95.43 E-value=0.23 Score=52.79 Aligned_cols=109 Identities=15% Similarity=0.208 Sum_probs=57.6
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHH
Q 003887 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (789)
Q Consensus 263 rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~ 342 (789)
..+++.+++|+|||.. +.++.++++.+ +..++ .++..+|...+...+... ..
T Consensus 115 ~gl~l~G~~GtGKThL-a~aia~~l~~~-------~~~v~-~~~~~~ll~~i~~~~~~~---------------~~---- 166 (268)
T PRK08116 115 VGLLLWGSVGTGKTYL-AACIANELIEK-------GVPVI-FVNFPQLLNRIKSTYKSS---------------GK---- 166 (268)
T ss_pred ceEEEECCCCCCHHHH-HHHHHHHHHHc-------CCeEE-EEEHHHHHHHHHHHHhcc---------------cc----
Confidence 3499999999999975 34455565442 23344 445556655443222110 00
Q ss_pred HHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccch--hccCCChHHHHHHHhhc-CCCceEEEEeccCcHHHH
Q 003887 343 KELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR--MFDLGFEPQIRSIVGQI-RPDRQTLLFSATMPRKVE 418 (789)
Q Consensus 343 ~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~--m~~~~f~~~i~~il~~~-~~~~q~ll~SATl~~~v~ 418 (789)
.+...++. .+..+++||||+++. ..+|. ...+..|++.. .....+|+.|-..|..+.
T Consensus 167 -----------~~~~~~~~-------~l~~~dlLviDDlg~e~~t~~~-~~~l~~iin~r~~~~~~~IiTsN~~~~eL~ 226 (268)
T PRK08116 167 -----------EDENEIIR-------SLVNADLLILDDLGAERDTEWA-REKVYNIIDSRYRKGLPTIVTTNLSLEELK 226 (268)
T ss_pred -----------ccHHHHHH-------HhcCCCEEEEecccCCCCCHHH-HHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 01111222 234678899999964 33332 33455555543 344566666666555543
No 234
>PRK06893 DNA replication initiation factor; Validated
Probab=95.37 E-value=0.038 Score=57.38 Aligned_cols=46 Identities=20% Similarity=0.312 Sum_probs=30.4
Q ss_pred cceeEEEEcccchhcc-CCChHHHHHHHhhcCC-CceEEEEeccCcHH
Q 003887 371 SRVTYLVLDEADRMFD-LGFEPQIRSIVGQIRP-DRQTLLFSATMPRK 416 (789)
Q Consensus 371 ~~i~~lVlDEah~m~~-~~f~~~i~~il~~~~~-~~q~ll~SATl~~~ 416 (789)
.++++|||||+|.+.. ..+...+..+++.+.. ..+++++|++.++.
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 4678999999998753 2344456666666654 34566788876543
No 235
>PRK08727 hypothetical protein; Validated
Probab=95.36 E-value=0.058 Score=56.14 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=26.5
Q ss_pred cceeEEEEcccchhccCC-ChHHHHHHHhhcCC-CceEEEEeccCcHHH
Q 003887 371 SRVTYLVLDEADRMFDLG-FEPQIRSIVGQIRP-DRQTLLFSATMPRKV 417 (789)
Q Consensus 371 ~~i~~lVlDEah~m~~~~-f~~~i~~il~~~~~-~~q~ll~SATl~~~v 417 (789)
.++++|||||+|.+.... ....+..+++.+.. ..++|+.|...|...
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 455789999999876433 23344555555433 334444444445443
No 236
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.25 E-value=0.056 Score=64.92 Aligned_cols=74 Identities=15% Similarity=0.137 Sum_probs=54.8
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhh
Q 003887 244 GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (789)
Q Consensus 244 g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~ 323 (789)
.-..+++-|++++-. ...++++.|..|||||.+ ++.-+.+++.... .....+|+|+.|+..|..+.+.+.....
T Consensus 193 e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~v-l~~r~ayLl~~~~---~~~~~IL~ltft~~AA~em~eRL~~~lg 266 (684)
T PRK11054 193 ESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSV-LVARAGWLLARGQ---AQPEQILLLAFGRQAAEEMDERIRERLG 266 (684)
T ss_pred cCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHH-HHHHHHHHHHhCC---CCHHHeEEEeccHHHHHHHHHHHHHhcC
Confidence 335789999999853 345789999999999987 5555556654321 1234699999999999999888877654
No 237
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.17 E-value=0.028 Score=59.15 Aligned_cols=54 Identities=24% Similarity=0.301 Sum_probs=41.2
Q ss_pred CCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcC
Q 003887 218 FDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQ 290 (789)
Q Consensus 218 ~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~ 290 (789)
..+|..+.+|+++++|+.+.+.+... .-=+|+.+|||||||.. +.+|+.++.++
T Consensus 99 R~Ip~~i~~~e~LglP~i~~~~~~~~------------------~GLILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 99 RLIPSKIPTLEELGLPPIVRELAESP------------------RGLILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred eccCccCCCHHHcCCCHHHHHHHhCC------------------CceEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 35789999999999999877733211 01267889999999986 88889998665
No 238
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.07 E-value=0.089 Score=59.32 Aligned_cols=145 Identities=12% Similarity=0.230 Sum_probs=84.3
Q ss_pred CEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHH-HHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHH
Q 003887 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRE-LAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (789)
Q Consensus 264 dvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTre-La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~ 342 (789)
-.++.+..|||||.+..+-++..++.. ..+.++||+-|+.. |...+...++.....+++....-....+. .+
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~-----~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i 75 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN-----KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EI 75 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc-----CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EE
Confidence 467889999999999888888887664 13466899999887 66777777877766655532221111100 00
Q ss_pred HHHhc-CCcEEEeCH-HHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcCC--CceEEEEeccCcHHHH
Q 003887 343 KELKA-GCEIVIATP-GRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP--DRQTLLFSATMPRKVE 418 (789)
Q Consensus 343 ~~l~~-~~dIiV~Tp-~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~--~~q~ll~SATl~~~v~ 418 (789)
.+.. +..|++..- ..... ......+.++.+|||..+.. ..+..++..++. ....+++|.+++....
T Consensus 76 -~~~~~g~~i~f~g~~d~~~~-----ik~~~~~~~~~idEa~~~~~----~~~~~l~~rlr~~~~~~~i~~t~NP~~~~~ 145 (396)
T TIGR01547 76 -KILNTGKKFIFKGLNDKPNK-----LKSGAGIAIIWFEEASQLTF----EDIKELIPRLRETGGKKFIIFSSNPESPLH 145 (396)
T ss_pred -EecCCCeEEEeecccCChhH-----hhCcceeeeehhhhhhhcCH----HHHHHHHHHhhccCCccEEEEEcCcCCCcc
Confidence 1112 445665443 11111 11233478999999998743 244444444542 2224788888764333
Q ss_pred HHHHHHh
Q 003887 419 KLAREIL 425 (789)
Q Consensus 419 ~l~~~~l 425 (789)
-+...|.
T Consensus 146 w~~~~f~ 152 (396)
T TIGR01547 146 WVKKRFI 152 (396)
T ss_pred HHHHHHH
Confidence 3334443
No 239
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.05 E-value=0.074 Score=55.41 Aligned_cols=43 Identities=19% Similarity=0.284 Sum_probs=25.7
Q ss_pred eeEEEEcccchhccC-CChHHHHHHHhhcCC-CceEEEEeccCcH
Q 003887 373 VTYLVLDEADRMFDL-GFEPQIRSIVGQIRP-DRQTLLFSATMPR 415 (789)
Q Consensus 373 i~~lVlDEah~m~~~-~f~~~i~~il~~~~~-~~q~ll~SATl~~ 415 (789)
+++|||||+|.+... .+...+..+++.+.. ....+++|++.|+
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 468999999987532 345556666666543 2223445555443
No 240
>PRK12377 putative replication protein; Provisional
Probab=94.99 E-value=0.081 Score=55.48 Aligned_cols=45 Identities=13% Similarity=0.219 Sum_probs=27.9
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHH
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIY 315 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~ 315 (789)
...+++.+++|+|||.. +.++.+++... +..+ ++++..+|..++.
T Consensus 101 ~~~l~l~G~~GtGKThL-a~AIa~~l~~~-------g~~v-~~i~~~~l~~~l~ 145 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHL-AAAIGNRLLAK-------GRSV-IVVTVPDVMSRLH 145 (248)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHHHc-------CCCe-EEEEHHHHHHHHH
Confidence 35799999999999964 34444554332 3334 4445566766553
No 241
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.92 E-value=0.13 Score=58.95 Aligned_cols=109 Identities=13% Similarity=0.175 Sum_probs=57.0
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHH
Q 003887 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (789)
Q Consensus 263 rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~ 342 (789)
..+++.|++|+|||.. +-++.+++... ..+..++++ +...+..++...++.-
T Consensus 149 ~~l~l~G~~G~GKThL-~~ai~~~~~~~-----~~~~~v~yi-~~~~~~~~~~~~~~~~--------------------- 200 (450)
T PRK00149 149 NPLFIYGGVGLGKTHL-LHAIGNYILEK-----NPNAKVVYV-TSEKFTNDFVNALRNN--------------------- 200 (450)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHHh-----CCCCeEEEE-EHHHHHHHHHHHHHcC---------------------
Confidence 4589999999999975 33444444332 113445555 5555655443333210
Q ss_pred HHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCC-ChHHHHHHHhhcC-CCceEEEEeccCcHHHH
Q 003887 343 KELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG-FEPQIRSIVGQIR-PDRQTLLFSATMPRKVE 418 (789)
Q Consensus 343 ~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~-f~~~i~~il~~~~-~~~q~ll~SATl~~~v~ 418 (789)
+...+.. .+..+++|||||+|.+.... ....+..+++.+. ...++++.|...|..+.
T Consensus 201 ------------~~~~~~~-------~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~ 259 (450)
T PRK00149 201 ------------TMEEFKE-------KYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELP 259 (450)
T ss_pred ------------cHHHHHH-------HHhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH
Confidence 0111222 12357789999999875432 2234445554443 34555554444454443
No 242
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.90 E-value=0.52 Score=56.75 Aligned_cols=131 Identities=15% Similarity=0.189 Sum_probs=65.7
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEE-EEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHH
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIG-VICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~v-LIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~ 340 (789)
++-++++++||+|||++....+..+.... .+.++ ||-+-|--.+ ..+.++.++...++.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~------G~kkV~lit~Dt~Rig--A~eQL~~~a~~~gvpv~---------- 246 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVARE------GADQLALLTTDSFRIG--ALEQLRIYGRILGVPVH---------- 246 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHc------CCCeEEEecCcccchH--HHHHHHHHHHhCCCCcc----------
Confidence 34577899999999986433222221111 11233 4333332211 13345555554454332
Q ss_pred HHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccC-CChHHHHHHHhhcCCCceEEEEeccCc-HHHH
Q 003887 341 QFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMP-RKVE 418 (789)
Q Consensus 341 ~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~-~f~~~i~~il~~~~~~~q~ll~SATl~-~~v~ 418 (789)
++.+|..+.+.+. .+..+++|+||=+=+.... .....+..+.....+...+++++||.. ..+.
T Consensus 247 -----------~~~~~~~l~~al~----~~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~ 311 (767)
T PRK14723 247 -----------AVKDAADLRFALA----ALGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLN 311 (767)
T ss_pred -----------ccCCHHHHHHHHH----HhcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHH
Confidence 2235555555543 2345577888877754321 122233333334445566778888864 3344
Q ss_pred HHHHHHh
Q 003887 419 KLAREIL 425 (789)
Q Consensus 419 ~l~~~~l 425 (789)
+++..|-
T Consensus 312 ~i~~~f~ 318 (767)
T PRK14723 312 EVVHAYR 318 (767)
T ss_pred HHHHHHh
Confidence 5555553
No 243
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.89 E-value=0.41 Score=50.84 Aligned_cols=131 Identities=21% Similarity=0.291 Sum_probs=71.7
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEE-EEEcCcH--HHHHHHHHHHHHHhhhcCcEEEEEEcCCC
Q 003887 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIG-VICAPTR--ELAHQIYLETKKFAKSHGIRVSAVYGGMS 337 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~v-LIl~PTr--eLa~Qi~~~~~k~~~~~~i~v~~~~gg~~ 337 (789)
.+..+++++++|+|||..+.+.+. .+.. .+..+ +|-+.+. ..+.||. .++...++.+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~-~l~~-------~~~~v~~i~~D~~ri~~~~ql~----~~~~~~~~~~~~------ 135 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAW-QFHG-------KKKTVGFITTDHSRIGTVQQLQ----DYVKTIGFEVIA------ 135 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHH-HHHH-------cCCeEEEEecCCCCHHHHHHHH----HHhhhcCceEEe------
Confidence 446788999999999986443332 2211 13333 4444332 3444544 333322333321
Q ss_pred hHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhcc-CCChHHHHHHHhhcCCCceEEEEeccC-cH
Q 003887 338 KLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATM-PR 415 (789)
Q Consensus 338 ~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~-~~f~~~i~~il~~~~~~~q~ll~SATl-~~ 415 (789)
..++..|...+..- .....+++||||-+=++.. ......+..++....++.-++.+|||. ..
T Consensus 136 ---------------~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~ 199 (270)
T PRK06731 136 ---------------VRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK 199 (270)
T ss_pred ---------------cCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH
Confidence 12444454444311 1224678999999976532 122334445555556666677899986 45
Q ss_pred HHHHHHHHHh
Q 003887 416 KVEKLAREIL 425 (789)
Q Consensus 416 ~v~~l~~~~l 425 (789)
.+...++.|-
T Consensus 200 d~~~~~~~f~ 209 (270)
T PRK06731 200 DMIEIITNFK 209 (270)
T ss_pred HHHHHHHHhC
Confidence 7777777764
No 244
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.81 E-value=0.16 Score=65.49 Aligned_cols=65 Identities=29% Similarity=0.250 Sum_probs=45.8
Q ss_pred CCCcHHHHHHHHHHHcC--CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHH
Q 003887 246 EKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI 314 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~g--rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi 314 (789)
..+++-|.+|+..++.. +-+++.+..|+|||.+ +-.++..+.. +....+..++.++||-..+..+
T Consensus 834 ~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~-l~~i~~~~~~---l~e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQ-FRAVMSAVNM---LPESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred cccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHH-HHHHHHHHHH---HhhccCceEEEEechHHHHHHH
Confidence 36899999999999965 6688999999999975 2222222211 1112456788899998777655
No 245
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.76 E-value=0.24 Score=64.68 Aligned_cols=127 Identities=20% Similarity=0.163 Sum_probs=76.0
Q ss_pred CCCcHHHHHHHHHHHcC--CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhh
Q 003887 246 EKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~g--rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~ 323 (789)
..+++.|.+|+..++.. +-+++.+..|+|||.. +-.++..+... ....+..++.++||--.|..+.+
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l---~~~~~~~V~glAPTgrAAk~L~e------- 1034 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTL---PESERPRVVGLGPTHRAVGEMRS------- 1034 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHh---hcccCceEEEECCcHHHHHHHHh-------
Confidence 46899999999999975 5678899999999975 33333333111 11235678889999877765431
Q ss_pred hcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHH----hhccccccceeEEEEcccchhccCCChHHHHHHHhh
Q 003887 324 SHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDML----KMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQ 399 (789)
Q Consensus 324 ~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l----~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~ 399 (789)
.++... |..+|+... ..........++||||||=++-. ..+..++..
T Consensus 1035 -~Gi~A~------------------------TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaSMv~~----~~m~~Ll~~ 1085 (1747)
T PRK13709 1035 -AGVDAQ------------------------TLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGN----TDMARAYAL 1085 (1747)
T ss_pred -cCcchh------------------------hHHHHhcccccccccccCCCCCCcEEEEEccccccH----HHHHHHHHh
Confidence 133211 222222110 01111223458999999987543 345555555
Q ss_pred cCC-CceEEEEecc
Q 003887 400 IRP-DRQTLLFSAT 412 (789)
Q Consensus 400 ~~~-~~q~ll~SAT 412 (789)
+.. ..++|++.=+
T Consensus 1086 ~~~~garvVLVGD~ 1099 (1747)
T PRK13709 1086 IAAGGGRAVSSGDT 1099 (1747)
T ss_pred hhcCCCEEEEecch
Confidence 553 5777877666
No 246
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.73 E-value=0.11 Score=59.46 Aligned_cols=110 Identities=14% Similarity=0.086 Sum_probs=58.9
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHH
Q 003887 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (789)
Q Consensus 263 rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~ 342 (789)
..+++.|++|+|||.. +-++.+.+... ..+.+++++ +..++...+...+....
T Consensus 142 npl~i~G~~G~GKTHL-l~Ai~~~l~~~-----~~~~~v~yv-~~~~f~~~~~~~l~~~~-------------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHL-LKAAKNYIESN-----FSDLKVSYM-SGDEFARKAVDILQKTH-------------------- 194 (450)
T ss_pred CceEEECCCCCcHHHH-HHHHHHHHHHh-----CCCCeEEEE-EHHHHHHHHHHHHHHhh--------------------
Confidence 4588999999999954 23333433321 123445554 44566666554443210
Q ss_pred HHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccC-CChHHHHHHHhhcCC-CceEEEEeccCcHHH
Q 003887 343 KELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRP-DRQTLLFSATMPRKV 417 (789)
Q Consensus 343 ~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~-~f~~~i~~il~~~~~-~~q~ll~SATl~~~v 417 (789)
+.+..+.. .+.++++|||||+|.+... .....+..+++.+.. ..|+|+.|-..|..+
T Consensus 195 --------------~~~~~~~~----~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 195 --------------KEIEQFKN----EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred --------------hHHHHHHH----HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 01111111 2346789999999987532 233455666665543 345555555455443
No 247
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.69 E-value=0.23 Score=54.42 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=28.5
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHH
Q 003887 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI 314 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi 314 (789)
.+.++++.|+||+|||.. +.++...++.. +..|++ ++..+|..++
T Consensus 182 ~~~~Lll~G~~GtGKThL-a~aIa~~l~~~-------g~~V~y-~t~~~l~~~l 226 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFL-SNCIAKELLDR-------GKSVIY-RTADELIEIL 226 (329)
T ss_pred cCCcEEEECCCCCcHHHH-HHHHHHHHHHC-------CCeEEE-EEHHHHHHHH
Confidence 457899999999999964 33444444432 444544 4556666544
No 248
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.61 E-value=0.16 Score=53.86 Aligned_cols=46 Identities=15% Similarity=0.282 Sum_probs=33.4
Q ss_pred cccccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEeccC
Q 003887 367 ALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (789)
Q Consensus 367 ~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl 413 (789)
......+++|||||||.|.... ...+++.+........+++.+..+
T Consensus 124 ~~~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 124 GYPCPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCCCCcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCCh
Confidence 3456678999999999987543 335666777766677788887774
No 249
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=94.61 E-value=0.06 Score=64.87 Aligned_cols=71 Identities=18% Similarity=0.116 Sum_probs=53.7
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhh
Q 003887 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (789)
Q Consensus 247 ~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~ 323 (789)
.+++-|.+++.. ....+++.|..|||||.+ ++.-+.+++.+.. -...++|+|+.|+..|..+.+.+.+++.
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~v-L~~Ria~Li~~~~---v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRV-ITNKIAHLIRGCG---YQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHhcC---CCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 478999999865 346789999999999987 5555666664311 1223589999999999999998887654
No 250
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.59 E-value=0.11 Score=63.37 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=28.1
Q ss_pred ccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEeccCc
Q 003887 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~ 414 (789)
..+++++||||+|+|-... .+.+.++|...+....+|+.+ |-+
T Consensus 118 ~~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t-t~~ 160 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT-TEP 160 (824)
T ss_pred cCCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe-CCh
Confidence 3578999999999987543 335566666655555555544 533
No 251
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.57 E-value=1.3 Score=51.26 Aligned_cols=130 Identities=17% Similarity=0.226 Sum_probs=62.7
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEE-EEEcC-cHHHHHHHHHHHHHHhhhcCcEEEEEEcCCCh
Q 003887 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIG-VICAP-TRELAHQIYLETKKFAKSHGIRVSAVYGGMSK 338 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~v-LIl~P-TreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~ 338 (789)
.++.+++++++|+|||......+. .+... ..+.++ ||-+- .|..+. +.++.+....++.+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa-~la~~-----~~gkkVaLIdtDtyRigA~---EQLk~ya~iLgv~v~~------- 412 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ-RFAAQ-----HAPRDVALVTTDTQRVGGR---EQLHSYGRQLGIAVHE------- 412 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH-HHHHh-----cCCCceEEEecccccccHH---HHHHHhhcccCceeEe-------
Confidence 456788899999999976332222 22111 112223 33333 343332 2233443323332221
Q ss_pred HHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccC-CChHHHHHHHhhcCCCceEEEEeccCc-HH
Q 003887 339 LDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMP-RK 416 (789)
Q Consensus 339 ~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~-~f~~~i~~il~~~~~~~q~ll~SATl~-~~ 416 (789)
+.++..|...+. .+.++++||||.+=++... ....++..+. .......+|+++++.. ..
T Consensus 413 --------------a~d~~~L~~aL~----~l~~~DLVLIDTaG~s~~D~~l~eeL~~L~-aa~~~a~lLVLpAtss~~D 473 (559)
T PRK12727 413 --------------ADSAESLLDLLE----RLRDYKLVLIDTAGMGQRDRALAAQLNWLR-AARQVTSLLVLPANAHFSD 473 (559)
T ss_pred --------------cCcHHHHHHHHH----HhccCCEEEecCCCcchhhHHHHHHHHHHH-HhhcCCcEEEEECCCChhH
Confidence 123334444443 2346789999999764221 1111222222 2233456778888864 35
Q ss_pred HHHHHHHHh
Q 003887 417 VEKLAREIL 425 (789)
Q Consensus 417 v~~l~~~~l 425 (789)
+..+++.|.
T Consensus 474 l~eii~~f~ 482 (559)
T PRK12727 474 LDEVVRRFA 482 (559)
T ss_pred HHHHHHHHH
Confidence 555555553
No 252
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=94.57 E-value=0.055 Score=63.05 Aligned_cols=82 Identities=27% Similarity=0.475 Sum_probs=65.0
Q ss_pred HHHhhcCCccEEEeehhhhccCCCCCccEEEE--------EcCCCCHHHHHHHHhhcCCCCCCCeEEEEEE-cc--ccHH
Q 003887 513 LQKFKSGVYHVLIATDVAARGLDIKSIKSVVN--------FDIARDMDMHVHRIGRTGRAGDKDGTAYTLV-TQ--KEAR 581 (789)
Q Consensus 513 l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~--------~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~-~~--~d~~ 581 (789)
-++|+.|+..|-|-..+++-||.+..-+.|+| +.+||+.+.-+|..|||+|..+-.+--|+|+ +. .+.+
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErR 929 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERR 929 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchH
Confidence 46899999999999999999999987666654 7899999999999999999985555445544 33 4777
Q ss_pred HHHHHHHHHHHcC
Q 003887 582 FAGELVNSLIAAG 594 (789)
Q Consensus 582 ~~~~l~~~L~~~~ 594 (789)
++.-+.+.|+..+
T Consensus 930 FAS~VAKRLESLG 942 (1300)
T KOG1513|consen 930 FASIVAKRLESLG 942 (1300)
T ss_pred HHHHHHHHHHhhc
Confidence 8777777776544
No 253
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.53 E-value=0.2 Score=51.50 Aligned_cols=42 Identities=12% Similarity=0.286 Sum_probs=24.6
Q ss_pred eeEEEEcccchhccC-CChHHHHHHHhhcCCCceEEEEeccCc
Q 003887 373 VTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMP 414 (789)
Q Consensus 373 i~~lVlDEah~m~~~-~f~~~i~~il~~~~~~~q~ll~SATl~ 414 (789)
..+|||||+|.+... .+...+..++..+......+++|++.+
T Consensus 91 ~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~ 133 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAA 133 (226)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 468999999987543 224456666655433223455666543
No 254
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=94.45 E-value=0.12 Score=62.54 Aligned_cols=99 Identities=18% Similarity=0.212 Sum_probs=74.9
Q ss_pred EEEecCCCcchHHHH-HHhcCCCCCCCcEEEEecccccHHHHHHHHHH----cCCceeeccCCCCHHHHHHHHHHhhcCC
Q 003887 446 VVHVIPSDAEKLPWL-LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGV 520 (789)
Q Consensus 446 ~~~~~~~~~~k~~~L-~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~----~g~~v~~lhg~~~~~eR~~~l~~F~~G~ 520 (789)
.+...+....|.... +..+.....+.++||.+++..-|...++.|.+ .++.+..+||+++..+|..++..+.+|.
T Consensus 285 ~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~ 364 (681)
T PRK10917 285 RLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGE 364 (681)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCC
Confidence 344445566665432 23333223455899999999988877777654 4789999999999999999999999999
Q ss_pred ccEEEeehh-hhccCCCCCccEEEE
Q 003887 521 YHVLIATDV-AARGLDIKSIKSVVN 544 (789)
Q Consensus 521 ~~VLVaT~v-~~~GlDI~~v~~VI~ 544 (789)
..|+|+|.. +...+.+.++.+||.
T Consensus 365 ~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 365 ADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred CCEEEchHHHhcccchhcccceEEE
Confidence 999999964 455678888888885
No 255
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.44 E-value=0.47 Score=50.59 Aligned_cols=132 Identities=20% Similarity=0.302 Sum_probs=66.7
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEc-C-cHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHH
Q 003887 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA-P-TRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (789)
Q Consensus 263 rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~-P-TreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~ 340 (789)
+-+++++++|+|||....-.+ .++.. .+.+++++. - .|.-+. +.++.|+...++.+.....+..
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA-~~l~~-------~g~~V~li~~D~~r~~a~---~ql~~~~~~~~i~~~~~~~~~d--- 138 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLA-NKLKK-------QGKSVLLAAGDTFRAAAI---EQLEEWAKRLGVDVIKQKEGAD--- 138 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHH-HHHHh-------cCCEEEEEeCCCCCHHHH---HHHHHHHHhCCeEEEeCCCCCC---
Confidence 457788999999998643332 22221 244555543 3 344332 3455555555544332221111
Q ss_pred HHHHHhcCCcEEEeCHHH-HHHHHhhccccccceeEEEEcccchhcc-CCChHHHHHHHhhcC------CCceEEEEecc
Q 003887 341 QFKELKAGCEIVIATPGR-LIDMLKMKALTMSRVTYLVLDEADRMFD-LGFEPQIRSIVGQIR------PDRQTLLFSAT 412 (789)
Q Consensus 341 ~~~~l~~~~dIiV~Tp~~-L~~~l~~~~~~l~~i~~lVlDEah~m~~-~~f~~~i~~il~~~~------~~~q~ll~SAT 412 (789)
|.. +.+.+.. .....+++||||=+-++.. ......+..+...+. ++--++.++|+
T Consensus 139 ---------------p~~~~~~~l~~--~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~ 201 (272)
T TIGR00064 139 ---------------PAAVAFDAIQK--AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT 201 (272)
T ss_pred ---------------HHHHHHHHHHH--HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECC
Confidence 111 1111111 1124567888888776432 112234445544444 56678888998
Q ss_pred CcHHHHHHHHHHh
Q 003887 413 MPRKVEKLAREIL 425 (789)
Q Consensus 413 l~~~v~~l~~~~l 425 (789)
...+....+..|.
T Consensus 202 ~~~~~~~~~~~f~ 214 (272)
T TIGR00064 202 TGQNALEQAKVFN 214 (272)
T ss_pred CCHHHHHHHHHHH
Confidence 7665545555554
No 256
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.40 E-value=0.2 Score=52.79 Aligned_cols=52 Identities=15% Similarity=0.287 Sum_probs=34.5
Q ss_pred HHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHH
Q 003887 258 IILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLET 318 (789)
Q Consensus 258 ~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~ 318 (789)
++.++.++++.+++|+|||.. +.++.+.+++ .|.. ++++++.+|+.++...+
T Consensus 101 ~~~~~~nl~l~G~~G~GKThL-a~Ai~~~l~~-------~g~s-v~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 101 FFERGENLVLLGPPGVGKTHL-AIAIGNELLK-------AGIS-VLFITAPDLLSKLKAAF 152 (254)
T ss_pred HhccCCcEEEECCCCCcHHHH-HHHHHHHHHH-------cCCe-EEEEEHHHHHHHHHHHH
Confidence 344778999999999999975 3344444432 1444 45567888887765443
No 257
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.31 E-value=0.21 Score=56.44 Aligned_cols=47 Identities=15% Similarity=0.248 Sum_probs=26.0
Q ss_pred ceeEEEEcccchhccCC-ChHHHHHHHhhc-CCCceEEEEeccCcHHHH
Q 003887 372 RVTYLVLDEADRMFDLG-FEPQIRSIVGQI-RPDRQTLLFSATMPRKVE 418 (789)
Q Consensus 372 ~i~~lVlDEah~m~~~~-f~~~i~~il~~~-~~~~q~ll~SATl~~~v~ 418 (789)
.+++|||||+|.+.... ....+..++..+ ....++|+.|...|..+.
T Consensus 199 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~ 247 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELP 247 (405)
T ss_pred hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHh
Confidence 46789999999876432 123344555444 234555554444444443
No 258
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.29 E-value=0.21 Score=58.51 Aligned_cols=49 Identities=14% Similarity=0.241 Sum_probs=31.1
Q ss_pred ccceeEEEEcccchhccCC-ChHHHHHHHhhcCC-CceEEEEeccCcHHHH
Q 003887 370 MSRVTYLVLDEADRMFDLG-FEPQIRSIVGQIRP-DRQTLLFSATMPRKVE 418 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~-f~~~i~~il~~~~~-~~q~ll~SATl~~~v~ 418 (789)
+.++++||||++|.+.... ....+..+++.+.. ..++|+.|-..|..+.
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV 425 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhh
Confidence 3457899999999876533 23455666666544 4667765555555543
No 259
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.24 E-value=0.16 Score=50.45 Aligned_cols=48 Identities=15% Similarity=0.226 Sum_probs=30.7
Q ss_pred EEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003887 265 IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 265 vl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~ 321 (789)
+++.+++|+|||+..+ -++...++ .+..++++.. .+...++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~-~~~~~~~~-------~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFAL-QFLYAGLA-------RGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHH-HHHHHHHH-------CCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 6889999999998533 33333322 2556777754 45666776666555
No 260
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=94.20 E-value=0.18 Score=65.01 Aligned_cols=124 Identities=19% Similarity=0.128 Sum_probs=78.6
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003887 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (789)
Q Consensus 247 ~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~ 326 (789)
+.|+-|.++|. ..++++++.|..|||||.+.+--++..+... ..-..+|+|+=|+..|..+.+.+.+.....-
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-----~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~ 73 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG-----VDIDRLLVVTFTNAAAREMKERIEEALQKAL 73 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC-----CCHhhEEEEeccHHHHHHHHHHHHHHHHHHH
Confidence 36889999997 4688999999999999998655565555432 1123489999999999998888887654211
Q ss_pred cEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccc--eeEEEEcccch
Q 003887 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSR--VTYLVLDEADR 383 (789)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~--i~~lVlDEah~ 383 (789)
.- ........+.+..-...-|+|...+...+-+.....-. -.+=|+||...
T Consensus 74 -~~-----~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 74 -QQ-----EPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred -hc-----CchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 00 00011111122222456789988886555443332222 25567888874
No 261
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.20 E-value=0.28 Score=58.54 Aligned_cols=148 Identities=18% Similarity=0.246 Sum_probs=89.9
Q ss_pred HHHcCCCCCcHHHHHHHHHHHcCC--CEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHH
Q 003887 240 ISKQGYEKPTSIQCQALPIILSGR--DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLE 317 (789)
Q Consensus 240 l~~~g~~~ptpiQ~~ai~~il~gr--dvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~ 317 (789)
+.....+.+..-|.+.+..++..+ -+++.|.=|-|||.+.-+.+. .+.... ..-.++|.+|+.+-++.+.+.
T Consensus 207 l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~-~~~~~~-----~~~~iiVTAP~~~nv~~Lf~f 280 (758)
T COG1444 207 LYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALA-AAARLA-----GSVRIIVTAPTPANVQTLFEF 280 (758)
T ss_pred HhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHH-HHHHhc-----CCceEEEeCCCHHHHHHHHHH
Confidence 444444666666666777777654 577889999999988665552 222211 034689999999999888888
Q ss_pred HHHHhhhcCcEEEEEEcCCChHHHHHHHh-cCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHH
Q 003887 318 TKKFAKSHGIRVSAVYGGMSKLDQFKELK-AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSI 396 (789)
Q Consensus 318 ~~k~~~~~~i~v~~~~gg~~~~~~~~~l~-~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~i 396 (789)
+.+-+...|++-.+....... +.... ....|=+-+|.... . ..++||||||=.|- .+.+..+
T Consensus 281 a~~~l~~lg~~~~v~~d~~g~---~~~~~~~~~~i~y~~P~~a~---------~-~~DllvVDEAAaIp----lplL~~l 343 (758)
T COG1444 281 AGKGLEFLGYKRKVAPDALGE---IREVSGDGFRIEYVPPDDAQ---------E-EADLLVVDEAAAIP----LPLLHKL 343 (758)
T ss_pred HHHhHHHhCCccccccccccc---eeeecCCceeEEeeCcchhc---------c-cCCEEEEehhhcCC----hHHHHHH
Confidence 887776666543222211100 00000 11224444443321 1 16789999998653 5666777
Q ss_pred HhhcCCCceEEEEeccCc
Q 003887 397 VGQIRPDRQTLLFSATMP 414 (789)
Q Consensus 397 l~~~~~~~q~ll~SATl~ 414 (789)
+... +.++||.|+.
T Consensus 344 ~~~~----~rv~~sTTIh 357 (758)
T COG1444 344 LRRF----PRVLFSTTIH 357 (758)
T ss_pred Hhhc----CceEEEeeec
Confidence 6654 3689999984
No 262
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.17 E-value=0.37 Score=52.43 Aligned_cols=39 Identities=15% Similarity=0.201 Sum_probs=25.4
Q ss_pred ceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEe
Q 003887 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 372 ~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~S 410 (789)
..++|||||+|.+........+..++...+...++|+.+
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 457899999998733223445666666666666665544
No 263
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.07 E-value=0.33 Score=51.90 Aligned_cols=54 Identities=17% Similarity=0.206 Sum_probs=33.7
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCcccc----cCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003887 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQ----KEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 263 rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~----~~~gp~vLIl~PTreLa~Qi~~~~~k~ 321 (789)
.+++++++|+.|||.+ +.++....+.. ...-|.++|-+|...-..-.+..+-..
T Consensus 62 p~lLivG~snnGKT~I-----i~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~ 119 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI-----IERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEA 119 (302)
T ss_pred CceEEecCCCCcHHHH-----HHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHH
Confidence 5899999999999974 34443321111 122377788888766665555554443
No 264
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=94.06 E-value=0.021 Score=56.39 Aligned_cols=124 Identities=20% Similarity=0.248 Sum_probs=53.3
Q ss_pred EEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHH
Q 003887 266 IGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL 345 (789)
Q Consensus 266 l~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l 345 (789)
++.|+-|-|||.+.-+.+ ..+.. .....++|.+|+.+-++.+.+.+.+-+...+++...... ........
T Consensus 1 VltA~RGRGKSa~lGl~~-a~l~~------~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~---~~~~~~~~ 70 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAA-AALIQ------KGKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKR---IGQIIKLR 70 (177)
T ss_dssp -EEE-TTSSHHHHHHHCC-CCSSS-----------EEEE-SS--S-HHHHHCC---------------------------
T ss_pred CccCCCCCCHHHHHHHHH-HHHHH------hcCceEEEecCCHHHHHHHHHHHHhhccccccccccccc---cccccccc
Confidence 578999999998633322 22222 122569999999998888777766655544443300000 00000011
Q ss_pred hcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEeccCc
Q 003887 346 KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (789)
Q Consensus 346 ~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~ 414 (789)
..+..|-+..|..+...- ...++||||||=.+- .+.+..++...+ .++||.|+.
T Consensus 71 ~~~~~i~f~~Pd~l~~~~-------~~~DlliVDEAAaIp----~p~L~~ll~~~~----~vv~stTi~ 124 (177)
T PF05127_consen 71 FNKQRIEFVAPDELLAEK-------PQADLLIVDEAAAIP----LPLLKQLLRRFP----RVVFSTTIH 124 (177)
T ss_dssp --CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCCSS----EEEEEEEBS
T ss_pred cccceEEEECCHHHHhCc-------CCCCEEEEechhcCC----HHHHHHHHhhCC----EEEEEeecc
Confidence 124667777776654321 235789999998753 455666654433 577888863
No 265
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=94.05 E-value=0.048 Score=66.84 Aligned_cols=107 Identities=19% Similarity=0.163 Sum_probs=82.4
Q ss_pred HhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccE
Q 003887 462 EKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKS 541 (789)
Q Consensus 462 ~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~ 541 (789)
..++......++|||+.-....+.+...+...++....--+.- +-...+..|++ --.+||-+...+-|+|+-++.|
T Consensus 1213 l~iK~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t~---d~~dc~~~fk~-I~clll~~~~~~~GLNL~eA~H 1288 (1394)
T KOG0298|consen 1213 LYIKFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGETE---DFDDCIICFKS-IDCLLLFVSKGSKGLNLIEATH 1288 (1394)
T ss_pred HHHhccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccCCc---chhhhhhhccc-ceEEEEEeccCcccccHHhhhh
Confidence 3344333456999999999988988888887776655544432 34556777776 3345677888999999999999
Q ss_pred EEEEcCCCCHHHHHHHHhhcCCCCCCCeEEE
Q 003887 542 VVNFDIARDMDMHVHRIGRTGRAGDKDGTAY 572 (789)
Q Consensus 542 VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i 572 (789)
|+..++-.|+..-.|.+||++|.|++..+.+
T Consensus 1289 vfl~ePiLN~~~E~QAigRvhRiGQ~~pT~V 1319 (1394)
T KOG0298|consen 1289 VFLVEPILNPGDEAQAIGRVHRIGQKRPTFV 1319 (1394)
T ss_pred hheeccccCchHHHhhhhhhhhcccccchhh
Confidence 9999999999999999999999996655443
No 266
>PRK05580 primosome assembly protein PriA; Validated
Probab=93.99 E-value=0.19 Score=60.58 Aligned_cols=95 Identities=18% Similarity=0.263 Sum_probs=72.9
Q ss_pred CCCcchHHHHHHhcCCCC-CCCcEEEEecccccHHHHHHHHHHc-CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeeh
Q 003887 451 PSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQK-GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD 528 (789)
Q Consensus 451 ~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~-g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~ 528 (789)
+....|....+..+.... .+.++||.++++..+..+.+.|++. +..+..+||+++..+|.........|..+|+|+|.
T Consensus 170 ~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTr 249 (679)
T PRK05580 170 VTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGAR 249 (679)
T ss_pred CCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEecc
Confidence 344556555444433322 3458999999999999999999764 78899999999999999999999999999999996
Q ss_pred hhhccCCCCCccEEEEEc
Q 003887 529 VAARGLDIKSIKSVVNFD 546 (789)
Q Consensus 529 v~~~GlDI~~v~~VI~~d 546 (789)
.+. =+.+.++.+||.-+
T Consensus 250 sal-~~p~~~l~liVvDE 266 (679)
T PRK05580 250 SAL-FLPFKNLGLIIVDE 266 (679)
T ss_pred HHh-cccccCCCEEEEEC
Confidence 433 25677888887644
No 267
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.81 E-value=0.66 Score=52.72 Aligned_cols=53 Identities=19% Similarity=0.328 Sum_probs=34.3
Q ss_pred eeEEEEcccchhcc-CCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHh
Q 003887 373 VTYLVLDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREIL 425 (789)
Q Consensus 373 i~~lVlDEah~m~~-~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l 425 (789)
.++||||.+-++.. ......+..+...+.++.-++.++|+...+....++.|.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F~ 229 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFH 229 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHHH
Confidence 37899999965321 122334556666666777788889988766555565543
No 268
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=93.77 E-value=0.13 Score=62.26 Aligned_cols=70 Identities=17% Similarity=0.082 Sum_probs=53.0
Q ss_pred CcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhh
Q 003887 248 PTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (789)
Q Consensus 248 ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~ 323 (789)
++|-|.+++.. ...++++.|..|||||.+ ++.-+.+++.... .....+|+|+.|+..|.++.+.+.+.+.
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~-L~~ri~~ll~~~~---~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRV-ITNKIAYLIQNCG---YKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHhcC---CCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 68889998864 356899999999999987 5555566654311 1234589999999999999998887654
No 269
>PRK09183 transposase/IS protein; Provisional
Probab=93.77 E-value=0.41 Score=50.65 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=19.0
Q ss_pred HHHHcCCCEEEEccCCChhhHHH
Q 003887 257 PIILSGRDIIGIAKTGSGKTAAF 279 (789)
Q Consensus 257 ~~il~grdvl~~a~TGsGKTla~ 279 (789)
.++..+.++++.+|+|+|||...
T Consensus 97 ~~i~~~~~v~l~Gp~GtGKThLa 119 (259)
T PRK09183 97 SFIERNENIVLLGPSGVGKTHLA 119 (259)
T ss_pred CchhcCCeEEEEeCCCCCHHHHH
Confidence 34667899999999999999653
No 270
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=93.69 E-value=0.35 Score=55.27 Aligned_cols=50 Identities=10% Similarity=0.250 Sum_probs=30.6
Q ss_pred cceeEEEEcccchhccCC-ChHHHHHHHhhcC-CCceEEEEeccCcHHHHHH
Q 003887 371 SRVTYLVLDEADRMFDLG-FEPQIRSIVGQIR-PDRQTLLFSATMPRKVEKL 420 (789)
Q Consensus 371 ~~i~~lVlDEah~m~~~~-f~~~i~~il~~~~-~~~q~ll~SATl~~~v~~l 420 (789)
.++++|||||+|.+.... ....+..+++.+. ...|+|+.|.+.|..+..+
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l 252 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAM 252 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhh
Confidence 467899999999876533 2344555555442 3456666655566665444
No 271
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.62 E-value=0.47 Score=53.29 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=18.1
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHH
Q 003887 263 RDIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 263 rdvl~~a~TGsGKTla~llp~l~~l 287 (789)
.++++.|++|+|||.+ +-.++..+
T Consensus 56 ~~~lI~G~~GtGKT~l-~~~v~~~l 79 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT-VKKVFEEL 79 (394)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHH
Confidence 5799999999999986 44444444
No 272
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=93.62 E-value=0.71 Score=55.84 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=16.6
Q ss_pred CE-EEEccCCChhhHHHHHHHHHHH
Q 003887 264 DI-IGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 264 dv-l~~a~TGsGKTla~llp~l~~l 287 (789)
++ +|.|+||+|||++ +..++..+
T Consensus 782 nvLYIyG~PGTGKTAT-VK~VLrEL 805 (1164)
T PTZ00112 782 QILYISGMPGTGKTAT-VYSVIQLL 805 (1164)
T ss_pred ceEEEECCCCCCHHHH-HHHHHHHH
Confidence 44 5899999999987 44445544
No 273
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=93.62 E-value=0.35 Score=53.02 Aligned_cols=41 Identities=12% Similarity=0.012 Sum_probs=29.6
Q ss_pred CcHHHHHHHHHHHcC----CCEEEEccCCChhhHHHHHHHHHHHhc
Q 003887 248 PTSIQCQALPIILSG----RDIIGIAKTGSGKTAAFVLPMIVHIMD 289 (789)
Q Consensus 248 ptpiQ~~ai~~il~g----rdvl~~a~TGsGKTla~llp~l~~l~~ 289 (789)
+.|||...+..++.. +-.|+.+|.|.|||..+ ..+...++.
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A-~~~A~~llC 48 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALA-ERLAAALLC 48 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHH-HHHHHHHcC
Confidence 468899999887754 24789999999999753 344455543
No 274
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.59 E-value=0.59 Score=52.76 Aligned_cols=133 Identities=15% Similarity=0.155 Sum_probs=67.0
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHH
Q 003887 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~ 340 (789)
.++-+.++++||+|||......+-.+++.. ......+|.+.+.-.+ ..+.+..++...++.+..+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~-----~~~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~~v~------- 255 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRH-----GADKVALLTTDSYRIG--GHEQLRIYGKLLGVSVRSIK------- 255 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc-----CCCeEEEEecCCcchh--HHHHHHHHHHHcCCceecCC-------
Confidence 455688999999999986332222222221 1123356666663333 23445566655565543322
Q ss_pred HHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhcc-CCChHHHHHHHhhcCCCceEEEEeccCc-HHHH
Q 003887 341 QFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMP-RKVE 418 (789)
Q Consensus 341 ~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~-~~f~~~i~~il~~~~~~~q~ll~SATl~-~~v~ 418 (789)
++..+...+. .+...++++||.+=+... .....++..+.....+...+|+++||.. ..+.
T Consensus 256 --------------~~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~ 317 (420)
T PRK14721 256 --------------DIADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLD 317 (420)
T ss_pred --------------CHHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHH
Confidence 2222222221 245667788888633211 0112223333222234456788999964 4455
Q ss_pred HHHHHHh
Q 003887 419 KLAREIL 425 (789)
Q Consensus 419 ~l~~~~l 425 (789)
+.+..|-
T Consensus 318 ~~~~~f~ 324 (420)
T PRK14721 318 EVISAYQ 324 (420)
T ss_pred HHHHHhc
Confidence 5565553
No 275
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.55 E-value=0.42 Score=54.80 Aligned_cols=62 Identities=16% Similarity=0.207 Sum_probs=31.6
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEE
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVS 330 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~ 330 (789)
++-++++++||+|||++....+-.+.... +....+||-+-+--+. ..+.++.|+...++.+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~-----G~~kV~LI~~Dt~Rig--A~EQLr~~AeilGVpv~ 317 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRH-----GASKVALLTTDSYRIG--GHEQLRIYGKILGVPVH 317 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhc-----CCCeEEEEeCCccchh--HHHHHHHHHHHhCCCee
Confidence 45578899999999987333222221121 1112334444442222 23456666665565443
No 276
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.50 E-value=0.46 Score=55.97 Aligned_cols=41 Identities=12% Similarity=0.206 Sum_probs=26.1
Q ss_pred ccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEec
Q 003887 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSA 411 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SA 411 (789)
..+++++||||+|+|....+ +.+.+.++.-+....+|+.|.
T Consensus 122 ~gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred cCCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEEeC
Confidence 35688999999999865433 344555555455555555543
No 277
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=93.48 E-value=0.17 Score=60.70 Aligned_cols=97 Identities=20% Similarity=0.237 Sum_probs=73.4
Q ss_pred EecCCCcchHHH-HHHhcCCCCCCCcEEEEecccccHHHHHHHHHH----cCCceeeccCCCCHHHHHHHHHHhhcCCcc
Q 003887 448 HVIPSDAEKLPW-LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYH 522 (789)
Q Consensus 448 ~~~~~~~~k~~~-L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~----~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~ 522 (789)
...+....|... ++..+.......+++|.+|+..-|..+++.+.+ .++.+..+||+++..+|..++....+|...
T Consensus 261 l~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~ 340 (630)
T TIGR00643 261 LQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIH 340 (630)
T ss_pred EECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCC
Confidence 334455556543 233333333456899999999998888777664 378999999999999999999999999999
Q ss_pred EEEeehh-hhccCCCCCccEEEE
Q 003887 523 VLIATDV-AARGLDIKSIKSVVN 544 (789)
Q Consensus 523 VLVaT~v-~~~GlDI~~v~~VI~ 544 (789)
|+|+|.. +...+.+.++.+||.
T Consensus 341 IiVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 341 LVVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred EEEecHHHHhccccccccceEEE
Confidence 9999954 456678888888874
No 278
>PTZ00293 thymidine kinase; Provisional
Probab=93.45 E-value=0.37 Score=49.07 Aligned_cols=39 Identities=18% Similarity=0.059 Sum_probs=25.0
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcH
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTR 308 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTr 308 (789)
|+=.++.+||+||||...+-.+-++. ..+.+++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~--------~ag~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFT--------YSEKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHH--------HcCCceEEEEecc
Confidence 44467899999999976333332232 2255688888853
No 279
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.43 E-value=0.21 Score=51.39 Aligned_cols=48 Identities=13% Similarity=0.268 Sum_probs=31.1
Q ss_pred ccceeEEEEcccchhccCC-ChHHHHHHHhhcC-CCceEEEEeccCcHHH
Q 003887 370 MSRVTYLVLDEADRMFDLG-FEPQIRSIVGQIR-PDRQTLLFSATMPRKV 417 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~-f~~~i~~il~~~~-~~~q~ll~SATl~~~v 417 (789)
+..+++||||.+|.+.... +...+..+++.+. ...++|+.|...|..+
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 4467899999999876532 3445566666653 4567777776766553
No 280
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=93.39 E-value=0.32 Score=50.17 Aligned_cols=43 Identities=16% Similarity=0.311 Sum_probs=26.1
Q ss_pred ceeEEEEcccchhccCCChHHHHHHHhhcCCCce-EEEEeccCcH
Q 003887 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ-TLLFSATMPR 415 (789)
Q Consensus 372 ~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q-~ll~SATl~~ 415 (789)
..++|||||+|.+-.. -...+..++..+..... +++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 4568999999986432 23345555555443333 5777777544
No 281
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.38 E-value=0.36 Score=52.82 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=24.3
Q ss_pred cceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEe
Q 003887 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 371 ~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~S 410 (789)
....+|||||+|.+... ....+..++...+...++|+.+
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEe
Confidence 45678999999987532 2334556666555555555443
No 282
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=93.34 E-value=0.79 Score=44.62 Aligned_cols=53 Identities=15% Similarity=0.282 Sum_probs=39.9
Q ss_pred ccceeEEEEcccchhccCCC--hHHHHHHHhhcCCCceEEEEeccCcHHHHHHHH
Q 003887 370 MSRVTYLVLDEADRMFDLGF--EPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAR 422 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~f--~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~ 422 (789)
...+++|||||+-..+..++ ...+..++...+....+|+.+-.+|+.+.+++.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 45789999999998877775 356777777766666777777778888766553
No 283
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.29 E-value=0.24 Score=57.63 Aligned_cols=93 Identities=19% Similarity=0.278 Sum_probs=71.6
Q ss_pred CcchHHHHHHhcCCCC-CCCcEEEEecccccHHHHHHHHHHc-CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhh
Q 003887 453 DAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQK-GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530 (789)
Q Consensus 453 ~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~-g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~ 530 (789)
...|....+..+.... .+.++||.+++..-+..+++.|++. +..+..+|++++..+|.++.....+|..+|+|+|..+
T Consensus 7 GsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsa 86 (505)
T TIGR00595 7 GSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSA 86 (505)
T ss_pred CCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHH
Confidence 4556555544443333 3458999999999999999999764 6789999999999999999999999999999999654
Q ss_pred hccCCCCCccEEEEEc
Q 003887 531 ARGLDIKSIKSVVNFD 546 (789)
Q Consensus 531 ~~GlDI~~v~~VI~~d 546 (789)
-- +.+.++.+||.-+
T Consensus 87 lf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 87 LF-LPFKNLGLIIVDE 101 (505)
T ss_pred Hc-CcccCCCEEEEEC
Confidence 32 4577788887533
No 284
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=93.28 E-value=0.16 Score=59.75 Aligned_cols=127 Identities=18% Similarity=0.173 Sum_probs=72.5
Q ss_pred CCCcHHHHHHHHHHHcC--CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHH-HHHHHHh
Q 003887 246 EKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIY-LETKKFA 322 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~g--rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~-~~~~k~~ 322 (789)
...+|||.+.+..+-.. +.++++.++-+|||.+ ++.++.+.+.+. .+ .+|++.||.++|..+. ..+..+.
T Consensus 15 ~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~-~~n~~g~~i~~~-----P~-~~l~v~Pt~~~a~~~~~~rl~Pmi 87 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPSVREVVVMKSAQVGKTEL-LLNWIGYSIDQD-----PG-PMLYVQPTDDAAKDFSKERLDPMI 87 (557)
T ss_pred CCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHH-HHhhceEEEEeC-----CC-CEEEEEEcHHHHHHHHHHHHHHHH
Confidence 46789999999888754 6789999999999995 444444443331 22 3799999999999886 3444444
Q ss_pred hhcCcEEEEEEc---CCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhc
Q 003887 323 KSHGIRVSAVYG---GMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (789)
Q Consensus 323 ~~~~i~v~~~~g---g~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~ 385 (789)
.....--..+.. .........+...+..|.++.-.. -..+.-..+.+|++||+|.+.
T Consensus 88 ~~sp~l~~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~S------~~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 88 RASPVLRRKLSPSKSRDSGNTILYKRFPGGFLYLVGANS------PSNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred HhCHHHHHHhCchhhcccCCchhheecCCCEEEEEeCCC------CcccccCCcCEEEEechhhcc
Confidence 322110011111 000011111112244454443111 012223457899999999974
No 285
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=93.23 E-value=0.23 Score=56.04 Aligned_cols=32 Identities=25% Similarity=0.234 Sum_probs=25.7
Q ss_pred CcHHHHHHHHHHHcCCCEEEEccCCChhhHHH
Q 003887 248 PTSIQCQALPIILSGRDIIGIAKTGSGKTAAF 279 (789)
Q Consensus 248 ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~ 279 (789)
+-......+..+..++++|+.+++|+|||..+
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 44555666777888999999999999999653
No 286
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.11 E-value=0.74 Score=49.96 Aligned_cols=25 Identities=12% Similarity=0.167 Sum_probs=17.9
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHH
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l 287 (789)
++.+++.|++|+|||.. +.++.+.+
T Consensus 156 ~~gl~L~G~~G~GKThL-a~Aia~~l 180 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYL-LAAIANEL 180 (306)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHH
Confidence 46799999999999964 33334444
No 287
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=93.10 E-value=0.58 Score=50.96 Aligned_cols=142 Identities=18% Similarity=0.198 Sum_probs=71.7
Q ss_pred CCCCcHHHHHHHHHHH----cCC---CEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHH
Q 003887 245 YEKPTSIQCQALPIIL----SGR---DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLE 317 (789)
Q Consensus 245 ~~~ptpiQ~~ai~~il----~gr---dvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~ 317 (789)
+..+.|+|..++..+. +++ -+|+.++.|.||+.. ...+...++..... ... .|+.
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~l-A~~lA~~LlC~~~~---~~~----~c~~---------- 63 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAV-ALALAEHVLASGPD---PAA----AQRT---------- 63 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHH-HHHHHHHHhCCCCC---CCC----cchH----------
Confidence 3567889999887766 333 488999999999975 44455555543210 000 1221
Q ss_pred HHHHhhh--cCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHH
Q 003887 318 TKKFAKS--HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRS 395 (789)
Q Consensus 318 ~~k~~~~--~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~ 395 (789)
++.+... -++.++......... .....|.|-..-.+...+.... .....+++|||+||.|... -.+.+.+
T Consensus 64 c~~~~~g~HPD~~~i~~~p~~~~~------k~~~~I~idqIR~l~~~~~~~p-~~g~~kV~iI~~ae~m~~~-AaNaLLK 135 (319)
T PRK08769 64 RQLIAAGTHPDLQLVSFIPNRTGD------KLRTEIVIEQVREISQKLALTP-QYGIAQVVIVDPADAINRA-ACNALLK 135 (319)
T ss_pred HHHHhcCCCCCEEEEecCCCcccc------cccccccHHHHHHHHHHHhhCc-ccCCcEEEEeccHhhhCHH-HHHHHHH
Confidence 1122211 123322101100000 0001233222222333332222 2346799999999998543 2455666
Q ss_pred HHhhcCCCceEEEEecc
Q 003887 396 IVGQIRPDRQTLLFSAT 412 (789)
Q Consensus 396 il~~~~~~~q~ll~SAT 412 (789)
+++.-++...+|++|.-
T Consensus 136 tLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 136 TLEEPSPGRYLWLISAQ 152 (319)
T ss_pred HhhCCCCCCeEEEEECC
Confidence 77775666666666654
No 288
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.04 E-value=0.41 Score=58.22 Aligned_cols=44 Identities=18% Similarity=0.180 Sum_probs=26.0
Q ss_pred cceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHH
Q 003887 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRK 416 (789)
Q Consensus 371 ~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~ 416 (789)
.+++++||||||+|.... ...+.+++...+....+|+. .|-+..
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFILa-TTe~~k 161 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLLA-TTDPQK 161 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEEE-CCCchh
Confidence 468899999999975332 23445555554444544443 444333
No 289
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.04 E-value=0.58 Score=55.98 Aligned_cols=52 Identities=25% Similarity=0.401 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHhhcCCccEEE--eehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhc
Q 003887 502 GDKDQASRMEILQKFKSGVYHVLI--ATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRT 561 (789)
Q Consensus 502 g~~~~~eR~~~l~~F~~G~~~VLV--aT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~ 561 (789)
|..+...-..+++.+.+++..-++ ...+..+|+|+.. +...+..++|++-..
T Consensus 242 G~~d~~~i~~ll~aL~~~d~~~~l~~~~~l~~~g~~~~~--------~l~dLl~~l~~~~~~ 295 (830)
T PRK07003 242 GALDQTYMVRLLDALAAGDGPEILAVADEMALRSLSFST--------ALQDLASLLHRIAWA 295 (830)
T ss_pred CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHH--------HHHHHHHHHHHHHHH
Confidence 667777777778877777765433 3466667877632 123455566665443
No 290
>PF13173 AAA_14: AAA domain
Probab=93.02 E-value=0.73 Score=42.92 Aligned_cols=38 Identities=21% Similarity=0.427 Sum_probs=26.0
Q ss_pred ceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEecc
Q 003887 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT 412 (789)
Q Consensus 372 ~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT 412 (789)
.-.+|||||+|++-+ |...+..+.... ++.++++.+..
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEccc
Confidence 456899999999864 566777776654 45566655444
No 291
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=92.97 E-value=1.7 Score=51.41 Aligned_cols=144 Identities=11% Similarity=0.111 Sum_probs=81.1
Q ss_pred CCcHHHHHHHHHH---HcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhh
Q 003887 247 KPTSIQCQALPII---LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (789)
Q Consensus 247 ~ptpiQ~~ai~~i---l~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~ 323 (789)
.|.|.-.+-|..+ +..+-.++.+|=|.|||.+..+. +.++... .+.+++|.+|...-+.++.+.+++++.
T Consensus 169 ~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~-l~~La~f------~Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 169 APSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAII-LAAMISF------LEIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred CCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHH-HHHHHHh------cCCeEEEECCChhhHHHHHHHHHHHHH
Confidence 3444444444444 35567888999999999874433 3344321 256799999999999999999888876
Q ss_pred hcCc--------EEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHH------HHH--hhccccccceeEEEEcccchhccC
Q 003887 324 SHGI--------RVSAVYGGMSKLDQFKELKAGCEIVIATPGRLI------DML--KMKALTMSRVTYLVLDEADRMFDL 387 (789)
Q Consensus 324 ~~~i--------~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~------~~l--~~~~~~l~~i~~lVlDEah~m~~~ 387 (789)
..+. ++..+.|+. -.|.+..|.... .+. ..+...-..+++||||||.-+-.
T Consensus 242 ~lg~~~~fp~~~~iv~vkgg~------------E~I~f~~p~gak~G~sti~F~Ars~~s~RG~~~DLLIVDEAAfI~~- 308 (752)
T PHA03333 242 AYQHKPWFPEEFKIVTLKGTD------------ENLEYISDPAAKEGKTTAHFLASSPNAARGQNPDLVIVDEAAFVNP- 308 (752)
T ss_pred HhccccccCCCceEEEeeCCe------------eEEEEecCcccccCcceeEEecccCCCcCCCCCCEEEEECcccCCH-
Confidence 4321 112222221 112222221111 000 01112223568999999998765
Q ss_pred CChHHHHHHHhhcC-CCceEEEEeccC
Q 003887 388 GFEPQIRSIVGQIR-PDRQTLLFSATM 413 (789)
Q Consensus 388 ~f~~~i~~il~~~~-~~~q~ll~SATl 413 (789)
+.+..++-.+. ....++++|.+.
T Consensus 309 ---~~l~aIlP~l~~~~~k~IiISS~~ 332 (752)
T PHA03333 309 ---GALLSVLPLMAVKGTKQIHISSPV 332 (752)
T ss_pred ---HHHHHHHHHHccCCCceEEEeCCC
Confidence 34444444333 355667777775
No 292
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=92.97 E-value=1.1 Score=50.53 Aligned_cols=132 Identities=16% Similarity=0.198 Sum_probs=67.2
Q ss_pred CEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEE-c-CcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHH
Q 003887 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC-A-PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (789)
Q Consensus 264 dvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl-~-PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~ 341 (789)
-+++++++|+|||+...- |.+.+.. .+.+++++ + |.|.-|.++ ++.++...++.+...+.+......
T Consensus 102 vi~lvG~~GvGKTTtaaK--LA~~l~~------~G~kV~lV~~D~~R~aA~eQ---Lk~~a~~~~vp~~~~~~~~dp~~i 170 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTK--LAYYYQR------KGFKPCLVCADTFRAGAFDQ---LKQNATKARIPFYGSYTESDPVKI 170 (429)
T ss_pred EEEEECCCCCCHHHHHHH--HHHHHHH------CCCCEEEEcCcccchhHHHH---HHHHhhccCCeEEeecCCCCHHHH
Confidence 467899999999976332 2222221 13344444 3 235444433 445555445555443333221111
Q ss_pred HHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccC-CChHHHHHHHhhcCCCceEEEEeccCcHHHHHH
Q 003887 342 FKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKL 420 (789)
Q Consensus 342 ~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~-~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l 420 (789)
.. +.+.. ..-..+++||||=+-++... .....+..+...+.++.-++.++|+........
T Consensus 171 ~~-----------------~~l~~--~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~ 231 (429)
T TIGR01425 171 AS-----------------EGVEK--FKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ 231 (429)
T ss_pred HH-----------------HHHHH--HHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH
Confidence 00 01110 00134667777777653321 123344455555566777888888877666666
Q ss_pred HHHHh
Q 003887 421 AREIL 425 (789)
Q Consensus 421 ~~~~l 425 (789)
+..|.
T Consensus 232 a~~F~ 236 (429)
T TIGR01425 232 AKAFK 236 (429)
T ss_pred HHHHH
Confidence 66663
No 293
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=92.95 E-value=0.79 Score=52.41 Aligned_cols=50 Identities=14% Similarity=0.359 Sum_probs=28.9
Q ss_pred ceeEEEEcccchhccCC-ChHHHHHHHhhcC-CCceEEEEeccCcHHHHHHH
Q 003887 372 RVTYLVLDEADRMFDLG-FEPQIRSIVGQIR-PDRQTLLFSATMPRKVEKLA 421 (789)
Q Consensus 372 ~i~~lVlDEah~m~~~~-f~~~i~~il~~~~-~~~q~ll~SATl~~~v~~l~ 421 (789)
.+++|||||+|.+.+.. ....+..+++.+. ...++|+.|...|..+..+.
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~ 245 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQ 245 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHH
Confidence 46789999999876532 2234445554443 34455555545555554443
No 294
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=92.91 E-value=0.21 Score=46.23 Aligned_cols=14 Identities=36% Similarity=0.477 Sum_probs=12.4
Q ss_pred EEEEccCCChhhHH
Q 003887 265 IIGIAKTGSGKTAA 278 (789)
Q Consensus 265 vl~~a~TGsGKTla 278 (789)
+|+.+|.|+|||..
T Consensus 1 ill~G~~G~GKT~l 14 (132)
T PF00004_consen 1 ILLHGPPGTGKTTL 14 (132)
T ss_dssp EEEESSTTSSHHHH
T ss_pred CEEECcCCCCeeHH
Confidence 68999999999974
No 295
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=92.90 E-value=0.79 Score=48.48 Aligned_cols=17 Identities=29% Similarity=0.346 Sum_probs=14.7
Q ss_pred CCEEEEccCCChhhHHH
Q 003887 263 RDIIGIAKTGSGKTAAF 279 (789)
Q Consensus 263 rdvl~~a~TGsGKTla~ 279 (789)
.++++.+|+|+|||..+
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 47899999999999753
No 296
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=92.87 E-value=0.39 Score=52.80 Aligned_cols=37 Identities=30% Similarity=0.416 Sum_probs=22.7
Q ss_pred ceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEeccC
Q 003887 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (789)
Q Consensus 372 ~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl 413 (789)
+=.+|+|||+||+-. .+...++-++ .+..++++.||-
T Consensus 104 r~tiLflDEIHRfnK----~QQD~lLp~v-E~G~iilIGATT 140 (436)
T COG2256 104 RRTILFLDEIHRFNK----AQQDALLPHV-ENGTIILIGATT 140 (436)
T ss_pred CceEEEEehhhhcCh----hhhhhhhhhh-cCCeEEEEeccC
Confidence 345799999999432 2333344444 355677888884
No 297
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.86 E-value=0.72 Score=53.13 Aligned_cols=43 Identities=16% Similarity=0.267 Sum_probs=25.8
Q ss_pred ccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEeccCc
Q 003887 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~ 414 (789)
..+++++||||+|.|....+ +.+.+.+...++...+|+ .+|-+
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~fIl-atte~ 156 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKFIL-ATTEV 156 (491)
T ss_pred cCCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEEEE-EeCCh
Confidence 45789999999998765333 244455555444444444 44533
No 298
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.77 E-value=1.8 Score=47.98 Aligned_cols=131 Identities=22% Similarity=0.316 Sum_probs=62.1
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCc-HHH-HHHHHHHHHHHhhhcCcEEEEEEcCCCh
Q 003887 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT-REL-AHQIYLETKKFAKSHGIRVSAVYGGMSK 338 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PT-reL-a~Qi~~~~~k~~~~~~i~v~~~~gg~~~ 338 (789)
.++-+++++|+|+|||....-.+ .++..+ ....++|-+-+ |.- +.| ++.++...++.+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA-~~l~~~------g~~V~lItaDtyR~gAveQ----Lk~yae~lgvpv~-------- 265 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLG-WQLLKQ------NRTVGFITTDTFRSGAVEQ----FQGYADKLDVELI-------- 265 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH-HHHHHc------CCeEEEEeCCccCccHHHH----HHHHhhcCCCCEE--------
Confidence 35667899999999998633332 223222 12233444433 321 234 3444443344322
Q ss_pred HHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccC-CChHHHHHHHhhcCCCceEEEEeccCc-HH
Q 003887 339 LDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMP-RK 416 (789)
Q Consensus 339 ~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~-~f~~~i~~il~~~~~~~q~ll~SATl~-~~ 416 (789)
++.+|..|...+..-. ....+++|+||=+=+.... .....+..++..+.++.-++.+||+.. ..
T Consensus 266 -------------~~~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d 331 (407)
T PRK12726 266 -------------VATSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSAD 331 (407)
T ss_pred -------------ecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHHH
Confidence 1234444544432111 1234677888877653311 122333444444444444566777643 34
Q ss_pred HHHHHHHH
Q 003887 417 VEKLAREI 424 (789)
Q Consensus 417 v~~l~~~~ 424 (789)
+...+..|
T Consensus 332 ~~~i~~~f 339 (407)
T PRK12726 332 VMTILPKL 339 (407)
T ss_pred HHHHHHhc
Confidence 44444443
No 299
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=92.71 E-value=0.24 Score=61.44 Aligned_cols=99 Identities=14% Similarity=0.184 Sum_probs=75.4
Q ss_pred EEEecCCCcchHHHHH-HhcCCCCCCCcEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCC
Q 003887 446 VVHVIPSDAEKLPWLL-EKLPGMIDDGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGV 520 (789)
Q Consensus 446 ~~~~~~~~~~k~~~L~-~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~ 520 (789)
.+...+....|....+ ..+.......+++|.+||..-|...++.|++. ++.+..++|..+..++..+++.+++|.
T Consensus 475 ~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~ 554 (926)
T TIGR00580 475 RLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGK 554 (926)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCC
Confidence 3445555666654332 22322234568999999999999988877653 577889999999999999999999999
Q ss_pred ccEEEeeh-hhhccCCCCCccEEEE
Q 003887 521 YHVLIATD-VAARGLDIKSIKSVVN 544 (789)
Q Consensus 521 ~~VLVaT~-v~~~GlDI~~v~~VI~ 544 (789)
++|+|+|. .+...+.+.++.+||.
T Consensus 555 ~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 555 IDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred ceEEEchHHHhhCCCCcccCCEEEe
Confidence 99999996 4456788888888885
No 300
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=92.69 E-value=0.6 Score=62.57 Aligned_cols=65 Identities=26% Similarity=0.226 Sum_probs=44.4
Q ss_pred CCCcHHHHHHHHHHHcC--CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHH
Q 003887 246 EKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI 314 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~g--rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi 314 (789)
..+++.|.+|+..++.+ +-+++.+..|+|||.. +..++..+... ....+..++.++||-.-+.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~-l~~~~~~i~~~---~~~~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTM-LESRYKPVLQA---FESEQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHh-HHHHHHHHHHH---HHhcCCeEEEEeChHHHHHHH
Confidence 46899999999999876 4567789999999975 31111211110 012366788899998777654
No 301
>PLN03025 replication factor C subunit; Provisional
Probab=92.61 E-value=1 Score=49.26 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=23.9
Q ss_pred cceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEecc
Q 003887 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT 412 (789)
Q Consensus 371 ~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT 412 (789)
....+|||||+|.|.... ...+..++...+....+++ +++
T Consensus 98 ~~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~il-~~n 137 (319)
T PLN03025 98 GRHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFAL-ACN 137 (319)
T ss_pred CCeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEEE-EeC
Confidence 357899999999976432 3344555555444444444 444
No 302
>PRK04195 replication factor C large subunit; Provisional
Probab=92.51 E-value=0.86 Score=52.81 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=14.9
Q ss_pred CCCEEEEccCCChhhHH
Q 003887 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvl~~a~TGsGKTla 278 (789)
.+.+|+.||+|+|||..
T Consensus 39 ~~~lLL~GppG~GKTtl 55 (482)
T PRK04195 39 KKALLLYGPPGVGKTSL 55 (482)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46799999999999975
No 303
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=92.43 E-value=0.49 Score=50.73 Aligned_cols=18 Identities=39% Similarity=0.521 Sum_probs=14.8
Q ss_pred CCCEEEEccCCChhhHHH
Q 003887 262 GRDIIGIAKTGSGKTAAF 279 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~ 279 (789)
++.++++++||+|||...
T Consensus 194 ~~vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTL 211 (282)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456788999999999863
No 304
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=92.33 E-value=0.46 Score=47.54 Aligned_cols=146 Identities=15% Similarity=0.094 Sum_probs=76.5
Q ss_pred HcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCCh-
Q 003887 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSK- 338 (789)
Q Consensus 260 l~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~- 338 (789)
+....+++...+|.|||.+++--++..+ ..|.+|+|+-=.+--. -.-+...+....++.... .|...
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~--------g~G~~V~ivQFlKg~~--~~GE~~~l~~l~~v~~~~--~g~~~~ 87 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAV--------GHGKKVGVVQFIKGAW--STGERNLLEFGGGVEFHV--MGTGFT 87 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHH--------HCCCeEEEEEEecCCC--ccCHHHHHhcCCCcEEEE--CCCCCc
Confidence 3456888999999999998777766665 3466677763222110 011112221111233222 22211
Q ss_pred HHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCCh--HHHHHHHhhcCCCceEEEEeccCcHH
Q 003887 339 LDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFE--PQIRSIVGQIRPDRQTLLFSATMPRK 416 (789)
Q Consensus 339 ~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~--~~i~~il~~~~~~~q~ll~SATl~~~ 416 (789)
+.. ...+.-+......+.... ..+.-..+++|||||+-..++.++. ..+..++...++...+|+..-.+|+.
T Consensus 88 ~~~-----~~~~e~~~~~~~~~~~a~-~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~ 161 (191)
T PRK05986 88 WET-----QDRERDIAAAREGWEEAK-RMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRE 161 (191)
T ss_pred ccC-----CCcHHHHHHHHHHHHHHH-HHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHH
Confidence 000 000000001111122211 1222357899999999998888864 45667777656566666666668887
Q ss_pred HHHHHHH
Q 003887 417 VEKLARE 423 (789)
Q Consensus 417 v~~l~~~ 423 (789)
+.+++..
T Consensus 162 Lie~ADl 168 (191)
T PRK05986 162 LIEAADL 168 (191)
T ss_pred HHHhCch
Confidence 7666543
No 305
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=92.30 E-value=0.36 Score=52.57 Aligned_cols=65 Identities=25% Similarity=0.206 Sum_probs=42.6
Q ss_pred HHHHcCCCCCcHHHHHHHHHHH-cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHH
Q 003887 239 AISKQGYEKPTSIQCQALPIIL-SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (789)
Q Consensus 239 ~l~~~g~~~ptpiQ~~ai~~il-~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa 311 (789)
.+.+.|. +++.|.+.|..+. .+.++|++++||||||.. +-.++..+...+ ..-+++++=.+.||.
T Consensus 122 ~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~-----~~~rivtiEd~~El~ 187 (323)
T PRK13833 122 DYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASA-----PEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCC-----CCceEEEecCCcccc
Confidence 3444443 5677877776655 557899999999999974 555566554322 123567777777764
No 306
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=92.28 E-value=0.61 Score=54.03 Aligned_cols=18 Identities=22% Similarity=0.182 Sum_probs=15.0
Q ss_pred CCEEEEccCCChhhHHHH
Q 003887 263 RDIIGIAKTGSGKTAAFV 280 (789)
Q Consensus 263 rdvl~~a~TGsGKTla~l 280 (789)
+.+|+++|.|+|||.++.
T Consensus 44 ~a~Lf~Gp~G~GKTT~Ar 61 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSAR 61 (507)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 368999999999998643
No 307
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=92.18 E-value=1.2 Score=48.46 Aligned_cols=40 Identities=13% Similarity=0.221 Sum_probs=24.5
Q ss_pred ccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEe
Q 003887 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~S 410 (789)
...+.+|||||||.|... -...+.+.+..-+....+++.+
T Consensus 107 ~~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 107 EGGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred CCCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEc
Confidence 367899999999987652 2334445555444444444444
No 308
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=92.17 E-value=0.94 Score=45.20 Aligned_cols=88 Identities=19% Similarity=0.135 Sum_probs=52.8
Q ss_pred CEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHH
Q 003887 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK 343 (789)
Q Consensus 264 dvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~ 343 (789)
=.++++||.||||...+--+-++. ..+.+++|..|-..-- ++...+.-.-|...
T Consensus 6 l~~i~gpM~SGKT~eLl~r~~~~~--------~~g~~v~vfkp~iD~R-------------~~~~~V~Sr~G~~~----- 59 (201)
T COG1435 6 LEFIYGPMFSGKTEELLRRARRYK--------EAGMKVLVFKPAIDTR-------------YGVGKVSSRIGLSS----- 59 (201)
T ss_pred EEEEEccCcCcchHHHHHHHHHHH--------HcCCeEEEEecccccc-------------cccceeeeccCCcc-----
Confidence 357899999999986332222221 2366788888853211 12333333333332
Q ss_pred HHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccch
Q 003887 344 ELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (789)
Q Consensus 344 ~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~ 383 (789)
..++|-.+..+.+.+......+ .++.|.||||+-
T Consensus 60 -----~A~~i~~~~~i~~~i~~~~~~~-~~~~v~IDEaQF 93 (201)
T COG1435 60 -----EAVVIPSDTDIFDEIAALHEKP-PVDCVLIDEAQF 93 (201)
T ss_pred -----cceecCChHHHHHHHHhcccCC-CcCEEEEehhHh
Confidence 3466777777777776543322 288999999996
No 309
>PRK13342 recombination factor protein RarA; Reviewed
Probab=92.16 E-value=0.88 Score=51.64 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=14.1
Q ss_pred CCEEEEccCCChhhHH
Q 003887 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvl~~a~TGsGKTla 278 (789)
..+|+.+|+|+|||..
T Consensus 37 ~~ilL~GppGtGKTtL 52 (413)
T PRK13342 37 SSMILWGPPGTGKTTL 52 (413)
T ss_pred ceEEEECCCCCCHHHH
Confidence 3789999999999975
No 310
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=92.06 E-value=1.3 Score=43.63 Aligned_cols=53 Identities=13% Similarity=0.270 Sum_probs=39.6
Q ss_pred ccceeEEEEcccchhccCCCh--HHHHHHHhhcCCCceEEEEeccCcHHHHHHHH
Q 003887 370 MSRVTYLVLDEADRMFDLGFE--PQIRSIVGQIRPDRQTLLFSATMPRKVEKLAR 422 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~f~--~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~ 422 (789)
-..+++|||||+-..++.++. ..+..++...++...+|+..-.+|+.+.+++.
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 357899999999988887754 45667777766666777777778887766654
No 311
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=92.05 E-value=2.3 Score=41.73 Aligned_cols=55 Identities=18% Similarity=0.312 Sum_probs=31.2
Q ss_pred cceeEEEEcccchhc-cCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHh
Q 003887 371 SRVTYLVLDEADRMF-DLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREIL 425 (789)
Q Consensus 371 ~~i~~lVlDEah~m~-~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l 425 (789)
...++||+|....+. +......+..+.....++.-++.+.+.........+..+.
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~~ 136 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAFN 136 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHH
Confidence 356788899988643 2122333444444444566677777776555555555543
No 312
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=92.00 E-value=1.2 Score=51.44 Aligned_cols=88 Identities=19% Similarity=0.206 Sum_probs=55.2
Q ss_pred CCCHH-HHHHHHHcCCCCCc----HHHHHHHHHHHcC--CCEEEEccCCChhhHHHHHHHHHHHh-cCcccccCCCCEEE
Q 003887 231 GFSTQ-LMHAISKQGYEKPT----SIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIM-DQPELQKEEGPIGV 302 (789)
Q Consensus 231 ~l~~~-l~~~l~~~g~~~pt----piQ~~ai~~il~g--rdvl~~a~TGsGKTla~llp~l~~l~-~~~~~~~~~gp~vL 302 (789)
++.+. |+.+|.++--.+++ .||.+==.+|..- +-+++++..|||||.+++ +=+++++ ..+... ..+| +|
T Consensus 188 ~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiAL-HRvAyLlY~~R~~l-~~k~-vl 264 (747)
T COG3973 188 GGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIAL-HRVAYLLYGYRGPL-QAKP-VL 264 (747)
T ss_pred chHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHH-HHHHHHHhcccccc-ccCc-eE
Confidence 44444 55677766555554 4566555555543 457889999999999854 4444444 332221 1233 89
Q ss_pred EEcCcHHHHHHHHHHHHHH
Q 003887 303 ICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 303 Il~PTreLa~Qi~~~~~k~ 321 (789)
|+.|.+.++.-+.+.+=.+
T Consensus 265 vl~PN~vFleYis~VLPeL 283 (747)
T COG3973 265 VLGPNRVFLEYISRVLPEL 283 (747)
T ss_pred EEcCcHHHHHHHHHhchhh
Confidence 9999999988766655555
No 313
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.99 E-value=2.1 Score=45.37 Aligned_cols=125 Identities=18% Similarity=0.372 Sum_probs=74.2
Q ss_pred HHHHHcCC-----CEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEE
Q 003887 256 LPIILSGR-----DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVS 330 (789)
Q Consensus 256 i~~il~gr-----dvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~ 330 (789)
+|.++.|+ .+|+.+|+|+||+ ||.-++..-.. -..+-+-+..|+..|.-+-.++.+.
T Consensus 155 FPqlFtGkR~PwrgiLLyGPPGTGKS--YLAKAVATEAn----------STFFSvSSSDLvSKWmGESEkLVkn------ 216 (439)
T KOG0739|consen 155 FPQLFTGKRKPWRGILLYGPPGTGKS--YLAKAVATEAN----------STFFSVSSSDLVSKWMGESEKLVKN------ 216 (439)
T ss_pred chhhhcCCCCcceeEEEeCCCCCcHH--HHHHHHHhhcC----------CceEEeehHHHHHHHhccHHHHHHH------
Confidence 56677774 5899999999999 55555554211 3577788889998887666666431
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCC---hHHHHHH----HhhcC--
Q 003887 331 AVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGF---EPQIRSI----VGQIR-- 401 (789)
Q Consensus 331 ~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f---~~~i~~i----l~~~~-- 401 (789)
|..+.+. +.-++|.|||+|.|....- ....+.| +-+++
T Consensus 217 ----------------------------LFemARe-----~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGV 263 (439)
T KOG0739|consen 217 ----------------------------LFEMARE-----NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGV 263 (439)
T ss_pred ----------------------------HHHHHHh-----cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhcc
Confidence 1222221 2346799999997754321 1222222 22222
Q ss_pred --CCceEEEEecc-CcHHHHHHHHHHhCCCeEE
Q 003887 402 --PDRQTLLFSAT-MPRKVEKLAREILSDPVRV 431 (789)
Q Consensus 402 --~~~q~ll~SAT-l~~~v~~l~~~~l~~p~~i 431 (789)
.+--+|++.|| +|=.+...++.-+...+.|
T Consensus 264 G~d~~gvLVLgATNiPw~LDsAIRRRFekRIYI 296 (439)
T KOG0739|consen 264 GNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYI 296 (439)
T ss_pred ccCCCceEEEecCCCchhHHHHHHHHhhcceec
Confidence 34568899999 4444444555555444433
No 314
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=91.97 E-value=0.45 Score=50.52 Aligned_cols=117 Identities=17% Similarity=0.167 Sum_probs=55.9
Q ss_pred HcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEc-CCCh
Q 003887 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYG-GMSK 338 (789)
Q Consensus 260 l~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~g-g~~~ 338 (789)
..|.-+++.|++|+|||.. ++-++.++..+ .+..++++.- -+-..++...+..... ++.+..... ....
T Consensus 28 ~~g~~~~i~g~~G~GKT~l-~~~~~~~~~~~------~g~~vl~iS~-E~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~ 97 (271)
T cd01122 28 RKGELIILTAGTGVGKTTF-LREYALDLITQ------HGVRVGTISL-EEPVVRTARRLLGQYA--GKRLHLPDTVFIYT 97 (271)
T ss_pred cCCcEEEEEcCCCCCHHHH-HHHHHHHHHHh------cCceEEEEEc-ccCHHHHHHHHHHHHh--CCCcccCCcccccc
Confidence 4567789999999999975 33333333221 2455777643 2233444444433322 222111000 0011
Q ss_pred HHHH----HHHhcCCcEEE-e-----CHHHHHHHHhhccccccceeEEEEcccchhccC
Q 003887 339 LDQF----KELKAGCEIVI-A-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL 387 (789)
Q Consensus 339 ~~~~----~~l~~~~dIiV-~-----Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~ 387 (789)
...+ ..+.....+++ - |...+...+..-. .-..+++||||..+.+...
T Consensus 98 ~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~-~~~~~~~vvID~l~~l~~~ 155 (271)
T cd01122 98 LEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMA-VSHGIQHIIIDNLSIMVSD 155 (271)
T ss_pred HHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHH-hcCCceEEEECCHHHHhcc
Confidence 1111 22221122222 1 4555555554222 1236889999999987643
No 315
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=91.95 E-value=1 Score=44.63 Aligned_cols=54 Identities=13% Similarity=0.282 Sum_probs=39.5
Q ss_pred cceeEEEEcccchhccCCCh--HHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHH
Q 003887 371 SRVTYLVLDEADRMFDLGFE--PQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREI 424 (789)
Q Consensus 371 ~~i~~lVlDEah~m~~~~f~--~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~ 424 (789)
..+++|||||.-..+..++. ..+..++..-|....+|+..-..|+.+.+++...
T Consensus 121 ~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADlV 176 (198)
T COG2109 121 GKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADLV 176 (198)
T ss_pred CCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHH
Confidence 36899999999988887755 4566777766666666666656888887776643
No 316
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=91.91 E-value=0.72 Score=54.16 Aligned_cols=136 Identities=19% Similarity=0.227 Sum_probs=81.9
Q ss_pred HcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc--CcEEEEEEcCCC
Q 003887 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH--GIRVSAVYGGMS 337 (789)
Q Consensus 260 l~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~--~i~v~~~~gg~~ 337 (789)
+..+-.++..|=-.|||.. +.+++..++.. -.+-++++++|.+..+..+++++..++... .-.+..+.| ..
T Consensus 252 fkqk~tVflVPRR~GKTwi-vv~iI~~ll~s-----~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~ 324 (738)
T PHA03368 252 FRQRATVFLVPRRHGKTWF-LVPLIALALAT-----FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ET 324 (738)
T ss_pred hhccceEEEecccCCchhh-HHHHHHHHHHh-----CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cE
Confidence 3456678888888999985 44666655432 236779999999999999999999876532 111222222 11
Q ss_pred hHHHHHHHhcC--CcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhc-CCCceEEEEeccCc
Q 003887 338 KLDQFKELKAG--CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPDRQTLLFSATMP 414 (789)
Q Consensus 338 ~~~~~~~l~~~--~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~-~~~~q~ll~SATl~ 414 (789)
. ...+..+ .-|.++|- -..+...-..+++||||||+-+.+. .+..++-.+ ..+.++|++|.|-.
T Consensus 325 I---~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~----al~~ilp~l~~~n~k~I~ISS~Ns 391 (738)
T PHA03368 325 I---SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPD----AVQTIMGFLNQTNCKIIFVSSTNT 391 (738)
T ss_pred E---EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHH----HHHHHHHHHhccCccEEEEecCCC
Confidence 1 0111222 24555531 0112223346899999999987653 333333222 23789999998854
Q ss_pred H
Q 003887 415 R 415 (789)
Q Consensus 415 ~ 415 (789)
.
T Consensus 392 ~ 392 (738)
T PHA03368 392 G 392 (738)
T ss_pred C
Confidence 3
No 317
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.91 E-value=0.46 Score=56.07 Aligned_cols=42 Identities=14% Similarity=0.166 Sum_probs=25.7
Q ss_pred cceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEeccCc
Q 003887 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (789)
Q Consensus 371 ~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~ 414 (789)
.+++++||||+|+|.... ...+.+++...+....+|+ .+|-+
T Consensus 117 gk~KV~IIDEVh~LS~~A-~NALLKtLEEPP~~v~FIL-aTtd~ 158 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS-FNALLKTLEEPPEHVKFLF-ATTDP 158 (702)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhcCCCCcEEEE-EECCh
Confidence 467899999999875443 2345556665544444444 44533
No 318
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=91.82 E-value=1.8 Score=51.56 Aligned_cols=41 Identities=17% Similarity=0.211 Sum_probs=24.3
Q ss_pred cceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEeccC
Q 003887 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (789)
Q Consensus 371 ~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl 413 (789)
.+++++||||+|+|....+ +.+.+++..-+....+|+ ..|-
T Consensus 118 g~~KV~IIDEah~Ls~~a~-NALLKtLEEPp~~v~FIL-~Tt~ 158 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSF-NALLKTLEEPPEHVKFLL-ATTD 158 (647)
T ss_pred CCCEEEEEechHhCCHHHH-HHHHHHHHcCCCCeEEEE-ecCC
Confidence 4688999999998765432 344445555444444444 3443
No 319
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=91.74 E-value=2.1 Score=45.10 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=22.0
Q ss_pred CCcHHHHHHHHHHH----cCC-CEEEEccCCChhhHH
Q 003887 247 KPTSIQCQALPIIL----SGR-DIIGIAKTGSGKTAA 278 (789)
Q Consensus 247 ~ptpiQ~~ai~~il----~gr-dvl~~a~TGsGKTla 278 (789)
-+++.+.+++..+. .+. .+++.|++|+|||..
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl 59 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTL 59 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 35556666665543 223 578899999999975
No 320
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=91.70 E-value=0.42 Score=56.55 Aligned_cols=40 Identities=10% Similarity=0.154 Sum_probs=25.9
Q ss_pred ccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEe
Q 003887 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~S 410 (789)
+...++|||||+|.|.... .+.+.+.+...++...+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 4678999999999976432 234455555555555555544
No 321
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=91.64 E-value=3.2 Score=40.97 Aligned_cols=140 Identities=16% Similarity=0.147 Sum_probs=63.6
Q ss_pred EEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHH
Q 003887 265 IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE 344 (789)
Q Consensus 265 vl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~ 344 (789)
+.+.--.|-|||.+++=-++..+ ..+-+|+|+-=.+-- --.-++..+....++.+.. .+.........
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~--------G~G~rV~ivQFlKg~--~~~GE~~~l~~l~~~~~~~--~g~~f~~~~~~ 73 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAA--------GHGMRVLIVQFLKGG--RYSGELKALKKLPNVEIER--FGKGFVWRMNE 73 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHH--------CTT--EEEEESS--S--S--HHHHHHGGGT--EEEE----TT----GGG
T ss_pred EEEEeCCCCCchHHHHHHHHHHH--------hCCCEEEEEEEecCC--CCcCHHHHHHhCCeEEEEE--cCCcccccCCC
Confidence 34455678899999887777766 567788887443330 0112222222211233322 12111000000
Q ss_pred HhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCCh--HHHHHHHhhcCCCceEEEEeccCcHHHHHHH
Q 003887 345 LKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFE--PQIRSIVGQIRPDRQTLLFSATMPRKVEKLA 421 (789)
Q Consensus 345 l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~--~~i~~il~~~~~~~q~ll~SATl~~~v~~l~ 421 (789)
-. .+ .......+... +..+.-..+++|||||+-..++.++. ..+..++...+....+|+..-.+|+.+.+.+
T Consensus 74 ~~--~~--~~~~~~~~~~a-~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~A 147 (172)
T PF02572_consen 74 EE--ED--RAAAREGLEEA-KEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAA 147 (172)
T ss_dssp HH--HH--HHHHHHHHHHH-HHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-
T ss_pred cH--HH--HHHHHHHHHHH-HHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhC
Confidence 00 00 00011111211 12233457999999999988888865 4566777766666777777677887776655
No 322
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=91.64 E-value=1 Score=52.14 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=15.0
Q ss_pred CCCEEEEccCCChhhHH
Q 003887 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvl~~a~TGsGKTla 278 (789)
.+.+|+.+|+|+|||+.
T Consensus 216 p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CcceEEECCCCCcHHHH
Confidence 36799999999999975
No 323
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=91.61 E-value=1.1 Score=49.86 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=18.3
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHH
Q 003887 263 RDIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 263 rdvl~~a~TGsGKTla~llp~l~~l 287 (789)
.++++.|++|+|||.+ +-.++.++
T Consensus 41 ~~i~I~G~~GtGKT~l-~~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAV-TKYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHH
Confidence 5799999999999975 44445554
No 324
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.55 E-value=1.8 Score=48.18 Aligned_cols=40 Identities=15% Similarity=0.207 Sum_probs=23.3
Q ss_pred ccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEe
Q 003887 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~S 410 (789)
.....++||||+|.|....+. .+.+.+...+....+|+.+
T Consensus 117 ~~~~kviIIDEa~~l~~~a~n-aLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 117 KSRFKVYLIDEVHMLSRHSFN-ALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred cCCceEEEEEChhhcCHHHHH-HHHHHHhcCCCCeEEEEEc
Confidence 346789999999997643222 3444444444444444443
No 325
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.51 E-value=0.65 Score=53.06 Aligned_cols=16 Identities=31% Similarity=0.256 Sum_probs=13.9
Q ss_pred EEEEccCCChhhHHHH
Q 003887 265 IIGIAKTGSGKTAAFV 280 (789)
Q Consensus 265 vl~~a~TGsGKTla~l 280 (789)
+|++||.|+|||.++.
T Consensus 43 ~Lf~GP~GtGKTTlAr 58 (484)
T PRK14956 43 YIFFGPRGVGKTTIAR 58 (484)
T ss_pred EEEECCCCCCHHHHHH
Confidence 6999999999998643
No 326
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=91.40 E-value=1.9 Score=44.81 Aligned_cols=52 Identities=10% Similarity=0.081 Sum_probs=31.6
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003887 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~ 321 (789)
.+.-+++.+++|+|||+.. +-++..+++ .+.++++++. .+-..++.+.+..+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~-~~~~~~~~~-------~g~~~~yi~~-e~~~~~~~~~~~~~ 74 (230)
T PRK08533 23 AGSLILIEGDESTGKSILS-QRLAYGFLQ-------NGYSVSYVST-QLTTTEFIKQMMSL 74 (230)
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHHHHHh-------CCCcEEEEeC-CCCHHHHHHHHHHh
Confidence 4567899999999999753 333444432 2455777774 33444555555443
No 327
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=91.36 E-value=0.3 Score=52.75 Aligned_cols=60 Identities=22% Similarity=0.151 Sum_probs=43.0
Q ss_pred CCCCCcHHHHHHHHHHHcCC-CEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHH
Q 003887 244 GYEKPTSIQCQALPIILSGR-DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAH 312 (789)
Q Consensus 244 g~~~ptpiQ~~ai~~il~gr-dvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~ 312 (789)
.|...++-|...+-.+...+ ++|+++.||||||+. +-+++.++ ...-++|.+=-|.||-.
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-LNal~~~i--------~~~eRvItiEDtaELql 214 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-LNALSGFI--------DSDERVITIEDTAELQL 214 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-HHHHHhcC--------CCcccEEEEeehhhhcc
Confidence 46788899999998888776 999999999999974 22222222 11226788878877753
No 328
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=91.30 E-value=1.3 Score=50.88 Aligned_cols=148 Identities=13% Similarity=0.115 Sum_probs=84.5
Q ss_pred CCCcHHHHHHHHHHHc------C----CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHH
Q 003887 246 EKPTSIQCQALPIILS------G----RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIY 315 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~------g----rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~ 315 (789)
..+.|+|.-++-.|+- + +-.+|..+-+-|||......++..++-. ...+....|++|+.+-+.+..
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~----~~~~~~~~i~A~s~~qa~~~F 135 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLN----WRSGAGIYILAPSVEQAANSF 135 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhh----hhcCCcEEEEeccHHHHHHhh
Confidence 3567999999988882 1 3467888888899965442233222221 145677999999999999999
Q ss_pred HHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHH---HHHhh--ccccccceeEEEEcccchhccCCCh
Q 003887 316 LETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLI---DMLKM--KALTMSRVTYLVLDEADRMFDLGFE 390 (789)
Q Consensus 316 ~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~---~~l~~--~~~~l~~i~~lVlDEah~m~~~~f~ 390 (789)
..++..+.... +... ......+.+..+..... ..+.. +...-.+..+.||||.|...+..
T Consensus 136 ~~ar~mv~~~~--------~l~~-----~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~-- 200 (546)
T COG4626 136 NPARDMVKRDD--------DLRD-----LCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE-- 200 (546)
T ss_pred HHHHHHHHhCc--------chhh-----hhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--
Confidence 88887765332 0000 00001112222222221 11111 12233457889999999865542
Q ss_pred HHHHHHHhhc--CCCceEEEEecc
Q 003887 391 PQIRSIVGQI--RPDRQTLLFSAT 412 (789)
Q Consensus 391 ~~i~~il~~~--~~~~q~ll~SAT 412 (789)
..+..+..-+ +++.+++..|..
T Consensus 201 ~~~~~~~~g~~ar~~~l~~~ITT~ 224 (546)
T COG4626 201 DMYSEAKGGLGARPEGLVVYITTS 224 (546)
T ss_pred HHHHHHHhhhccCcCceEEEEecC
Confidence 3444444433 456677776653
No 329
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=91.28 E-value=1 Score=49.75 Aligned_cols=40 Identities=18% Similarity=0.138 Sum_probs=25.9
Q ss_pred ccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEe
Q 003887 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~S 410 (789)
...+.+|||||||.|-... .+.+.+++...+....+|++|
T Consensus 139 ~g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILIS 178 (351)
T ss_pred cCCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 3567899999999975432 344666666644455555554
No 330
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=91.24 E-value=0.86 Score=50.95 Aligned_cols=48 Identities=13% Similarity=0.232 Sum_probs=34.8
Q ss_pred ceeEEEEcccchhccC-CChHHHHHHHhhcCCC-ceEEEEeccCcHHHHH
Q 003887 372 RVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPD-RQTLLFSATMPRKVEK 419 (789)
Q Consensus 372 ~i~~lVlDEah~m~~~-~f~~~i~~il~~~~~~-~q~ll~SATl~~~v~~ 419 (789)
++++|+||.++.+... .....+..+++.+... .|+|+.|..+|..+..
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~ 224 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNG 224 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhcc
Confidence 7789999999987665 3556667777777644 4777777778776653
No 331
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=91.23 E-value=0.6 Score=48.65 Aligned_cols=51 Identities=18% Similarity=0.169 Sum_probs=33.8
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~ 321 (789)
|.-+++.+++|+|||+..+--+...+ . .+-.+|++. +.+-..|+.+.+..+
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~-~-------~ge~~lyvs-~ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGL-Q-------MGEPGIYVA-LEEHPVQVRRNMAQF 71 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH-H-------cCCcEEEEE-eeCCHHHHHHHHHHh
Confidence 46789999999999986443333333 2 245577776 456666777766655
No 332
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=91.19 E-value=1.4 Score=43.06 Aligned_cols=42 Identities=12% Similarity=0.245 Sum_probs=28.2
Q ss_pred cceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEeccC
Q 003887 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (789)
Q Consensus 371 ~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl 413 (789)
..++++|||+||.|-.. -...+.+.++.-+....++++|..+
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECCh
Confidence 56899999999987643 2456667777766666666666543
No 333
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=91.17 E-value=0.54 Score=51.26 Aligned_cols=67 Identities=28% Similarity=0.289 Sum_probs=43.5
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHH-HcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHH
Q 003887 237 MHAISKQGYEKPTSIQCQALPII-LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (789)
Q Consensus 237 ~~~l~~~g~~~ptpiQ~~ai~~i-l~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa 311 (789)
++.|.+.|+ +++.|.+.+..+ ..+++++++++||||||.. +-.++..+...+ ...++++|-.+.||.
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~~-----~~~rivtIEd~~El~ 191 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQD-----PTERVFIIEDTGEIQ 191 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhcC-----CCceEEEEcCCCccc
Confidence 344445554 557777777654 4668999999999999964 555555543221 234577777777763
No 334
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=91.14 E-value=1.3 Score=53.69 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=27.1
Q ss_pred ceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHH
Q 003887 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLARE 423 (789)
Q Consensus 372 ~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~ 423 (789)
...+|||||+|++.. .+...++..+. ..+++++++|-++....+...
T Consensus 109 ~~~IL~IDEIh~Ln~----~qQdaLL~~lE-~g~IiLI~aTTenp~~~l~~a 155 (725)
T PRK13341 109 KRTILFIDEVHRFNK----AQQDALLPWVE-NGTITLIGATTENPYFEVNKA 155 (725)
T ss_pred CceEEEEeChhhCCH----HHHHHHHHHhc-CceEEEEEecCCChHhhhhhH
Confidence 456899999998542 22233333332 456778888755443333333
No 335
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=91.09 E-value=2.2 Score=47.54 Aligned_cols=24 Identities=38% Similarity=0.466 Sum_probs=17.5
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHH
Q 003887 263 RDIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 263 rdvl~~a~TGsGKTla~llp~l~~l 287 (789)
.++++.++||+|||++ +--++..+
T Consensus 43 ~n~~iyG~~GTGKT~~-~~~v~~~l 66 (366)
T COG1474 43 SNIIIYGPTGTGKTAT-VKFVMEEL 66 (366)
T ss_pred ccEEEECCCCCCHhHH-HHHHHHHH
Confidence 4799999999999986 33334444
No 336
>PRK14873 primosome assembly protein PriA; Provisional
Probab=91.06 E-value=0.65 Score=55.66 Aligned_cols=92 Identities=20% Similarity=0.201 Sum_probs=74.8
Q ss_pred cchHHHHHHhcCCCCC-CCcEEEEecccccHHHHHHHHHHc-C-CceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhh
Q 003887 454 AEKLPWLLEKLPGMID-DGDVLVFASKKTTVDEIESQLAQK-G-FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530 (789)
Q Consensus 454 ~~k~~~L~~~L~~~~~-~~kvLVF~~s~~~a~~l~~~L~~~-g-~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~ 530 (789)
..|...++.++...+. +.++||.++....+..+...|+.. + ..++.+|++++..+|.+......+|+.+|+|.|..+
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 4677777777766554 448999999999999999999865 3 579999999999999999999999999999999654
Q ss_pred hccCCCCCccEEEEEc
Q 003887 531 ARGLDIKSIKSVVNFD 546 (789)
Q Consensus 531 ~~GlDI~~v~~VI~~d 546 (789)
. =+-++++..||..+
T Consensus 251 v-FaP~~~LgLIIvdE 265 (665)
T PRK14873 251 V-FAPVEDLGLVAIWD 265 (665)
T ss_pred E-EeccCCCCEEEEEc
Confidence 3 24566777777644
No 337
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.90 E-value=2.1 Score=48.70 Aligned_cols=57 Identities=19% Similarity=0.278 Sum_probs=33.1
Q ss_pred CCCCCCCCcccCC---CCHHHHHHHHHcC---CCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHH
Q 003887 219 DVPRPVKTFEDCG---FSTQLMHAISKQG---YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 219 ~~P~pi~sf~~~~---l~~~l~~~l~~~g---~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla 278 (789)
.+-.|--.|+++| |+.+.-+.+++.- .-.|--+-+-.++ .-+.+|+.+|+|+|||+.
T Consensus 210 ~ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~---HVKGiLLyGPPGTGKTLi 272 (744)
T KOG0741|consen 210 SIINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIK---HVKGILLYGPPGTGKTLI 272 (744)
T ss_pred cccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCcc---ceeeEEEECCCCCChhHH
Confidence 3445667788874 6666655554431 1112222222221 236799999999999985
No 338
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=90.90 E-value=0.88 Score=49.28 Aligned_cols=52 Identities=23% Similarity=0.220 Sum_probs=27.7
Q ss_pred ccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhC
Q 003887 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILS 426 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~ 426 (789)
..+-.+|.|||+||+ ......++--+-.+--++++.||--+.-..+...++.
T Consensus 220 ~krkTilFiDEiHRF-----NksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlS 271 (554)
T KOG2028|consen 220 TKRKTILFIDEIHRF-----NKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLS 271 (554)
T ss_pred hcceeEEEeHHhhhh-----hhhhhhcccceeccCceEEEecccCCCccchhHHHHh
Confidence 345578999999993 3333332222222345677788854433334444433
No 339
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=90.86 E-value=0.74 Score=47.84 Aligned_cols=38 Identities=29% Similarity=0.321 Sum_probs=24.8
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEc
Q 003887 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~ 305 (789)
.|.-++++|++|+|||.. ++-++.++..+ .+..++++.
T Consensus 12 ~G~l~lI~G~~G~GKT~~-~~~~~~~~~~~------~g~~vly~s 49 (242)
T cd00984 12 PGDLIIIAARPSMGKTAF-ALNIAENIAKK------QGKPVLFFS 49 (242)
T ss_pred CCeEEEEEeCCCCCHHHH-HHHHHHHHHHh------CCCceEEEe
Confidence 455688999999999975 44444444332 145577776
No 340
>PRK10867 signal recognition particle protein; Provisional
Probab=90.82 E-value=2.8 Score=47.69 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=13.9
Q ss_pred CEEEEccCCChhhHHHH
Q 003887 264 DIIGIAKTGSGKTAAFV 280 (789)
Q Consensus 264 dvl~~a~TGsGKTla~l 280 (789)
-+++++++|+|||+...
T Consensus 102 vI~~vG~~GsGKTTtaa 118 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAG 118 (433)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 46789999999998643
No 341
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=90.79 E-value=0.17 Score=49.99 Aligned_cols=45 Identities=29% Similarity=0.317 Sum_probs=31.0
Q ss_pred HHHHhcCCcEEEeCHHHHHHHHhhcccc--ccceeEEEEcccchhcc
Q 003887 342 FKELKAGCEIVIATPGRLIDMLKMKALT--MSRVTYLVLDEADRMFD 386 (789)
Q Consensus 342 ~~~l~~~~dIiV~Tp~~L~~~l~~~~~~--l~~i~~lVlDEah~m~~ 386 (789)
.+.....++|||+++..|++-.....+. ...-.+|||||||.|.+
T Consensus 113 ~r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 113 ARELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HHHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 3445566999999999988765443332 23457899999998765
No 342
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.76 E-value=1.6 Score=51.73 Aligned_cols=44 Identities=18% Similarity=0.273 Sum_probs=26.2
Q ss_pred ccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEeccCcH
Q 003887 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPR 415 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~ 415 (789)
..+++++||||+|+|.... .+.+.+++...++...+| |.+|-+.
T Consensus 117 ~~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fI-l~t~~~~ 160 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFI-FATTEPH 160 (576)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEE-EEeCChh
Confidence 4578999999999876432 234555555544444444 4445433
No 343
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=90.71 E-value=2.8 Score=43.23 Aligned_cols=52 Identities=17% Similarity=0.201 Sum_probs=29.5
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003887 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~ 321 (789)
.|..+++.+++|+|||...+. ++.+.+.. +..++++.- .+.+.++.+.+..+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~-~~~~~~~~-------g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLH-FAYKGLRD-------GDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHHHHH-HHHHHHhc-------CCeEEEEEc-cCCHHHHHHHHHHh
Confidence 356789999999999975333 33333221 344666653 33444554444433
No 344
>PRK10689 transcription-repair coupling factor; Provisional
Probab=90.70 E-value=0.73 Score=58.61 Aligned_cols=99 Identities=11% Similarity=0.123 Sum_probs=73.1
Q ss_pred EEEecCCCcchHHHHHHh-cCCCCCCCcEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCC
Q 003887 446 VVHVIPSDAEKLPWLLEK-LPGMIDDGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGV 520 (789)
Q Consensus 446 ~~~~~~~~~~k~~~L~~~-L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~ 520 (789)
.+...+....|....+.. +.......++||.||++.-|..++..|.+. ++.+..++|..+..++..++..+++|.
T Consensus 624 ~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~ 703 (1147)
T PRK10689 624 RLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGK 703 (1147)
T ss_pred EEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCC
Confidence 344455566676432211 111223568999999999999988888653 467888999999999999999999999
Q ss_pred ccEEEeeh-hhhccCCCCCccEEEE
Q 003887 521 YHVLIATD-VAARGLDIKSIKSVVN 544 (789)
Q Consensus 521 ~~VLVaT~-v~~~GlDI~~v~~VI~ 544 (789)
++|||+|. .+...+.+.++.+||.
T Consensus 704 ~dIVVgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 704 IDILIGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred CCEEEECHHHHhCCCCHhhCCEEEE
Confidence 99999995 4555677778888774
No 345
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.69 E-value=3 Score=46.99 Aligned_cols=126 Identities=17% Similarity=0.190 Sum_probs=63.2
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEE-EEEcCc-HHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHH
Q 003887 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIG-VICAPT-RELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (789)
Q Consensus 263 rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~v-LIl~PT-reLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~ 340 (789)
.-+++++++|+|||.+..-.+...... .+.++ |+-+-+ |..+. ..++.++...++.+...
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~-------~G~~V~Lit~Dt~R~aA~---eQLk~yAe~lgvp~~~~-------- 285 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLH-------MGKSVSLYTTDNYRIAAI---EQLKRYADTMGMPFYPV-------- 285 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHh-------cCCeEEEecccchhhhHH---HHHHHHHHhcCCCeeeh--------
Confidence 347789999999998744333222222 13333 443333 33332 24555555444432110
Q ss_pred HHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhc-cCCChHHHHHHHhhcC---CCceEEEEeccCcH-
Q 003887 341 QFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF-DLGFEPQIRSIVGQIR---PDRQTLLFSATMPR- 415 (789)
Q Consensus 341 ~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~-~~~f~~~i~~il~~~~---~~~q~ll~SATl~~- 415 (789)
..+..+...+. -..+++||||=+-++. +..-...+..++..+. +...++.++||...
T Consensus 286 -------------~~~~~l~~~l~-----~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~ 347 (432)
T PRK12724 286 -------------KDIKKFKETLA-----RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH 347 (432)
T ss_pred -------------HHHHHHHHHHH-----hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH
Confidence 01222333332 2457889999766542 1112233344444332 23457888999866
Q ss_pred HHHHHHHHH
Q 003887 416 KVEKLAREI 424 (789)
Q Consensus 416 ~v~~l~~~~ 424 (789)
.+...+..|
T Consensus 348 ~~~~~~~~f 356 (432)
T PRK12724 348 HTLTVLKAY 356 (432)
T ss_pred HHHHHHHHh
Confidence 555555555
No 346
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=90.68 E-value=2.5 Score=48.01 Aligned_cols=17 Identities=35% Similarity=0.395 Sum_probs=14.0
Q ss_pred CEEEEccCCChhhHHHH
Q 003887 264 DIIGIAKTGSGKTAAFV 280 (789)
Q Consensus 264 dvl~~a~TGsGKTla~l 280 (789)
-+++++++|+|||....
T Consensus 101 vi~~vG~~GsGKTTtaa 117 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCG 117 (428)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 47789999999998643
No 347
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=90.39 E-value=1.7 Score=51.74 Aligned_cols=40 Identities=8% Similarity=0.081 Sum_probs=24.8
Q ss_pred ccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEe
Q 003887 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~S 410 (789)
+.++++|||||+|+|.... ...+.+++...+....+|+.+
T Consensus 117 ~gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 4567899999999865422 234555555545555555544
No 348
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.38 E-value=0.59 Score=54.37 Aligned_cols=39 Identities=13% Similarity=0.205 Sum_probs=25.8
Q ss_pred cceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEe
Q 003887 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 371 ~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~S 410 (789)
.+++++||||+|+|....+ ..+.+.+...++...+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4678999999998765433 34555666655555555544
No 349
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.35 E-value=2.5 Score=47.75 Aligned_cols=18 Identities=33% Similarity=0.242 Sum_probs=14.8
Q ss_pred CEEEEccCCChhhHHHHH
Q 003887 264 DIIGIAKTGSGKTAAFVL 281 (789)
Q Consensus 264 dvl~~a~TGsGKTla~ll 281 (789)
.+|+++|.|+|||.++.+
T Consensus 40 a~lf~Gp~G~GKtt~A~~ 57 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARV 57 (397)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 488999999999987443
No 350
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=90.32 E-value=0.64 Score=47.89 Aligned_cols=133 Identities=13% Similarity=0.144 Sum_probs=64.7
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc-----CcEEEEEEcCC
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH-----GIRVSAVYGGM 336 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~-----~i~v~~~~gg~ 336 (789)
|.-+++.+++|+|||+..+--+.+.+.. .+-.+++++- .+-..++.+.++.+.-.. .-....+....
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~-------~ge~vlyvs~-ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~ 90 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKN-------FGEKVLYVSF-EEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFP 90 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHH-------HT--EEEEES-SS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSG
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhh-------cCCcEEEEEe-cCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccc
Confidence 4678999999999998644334444422 0344777663 445566666666552100 00111111110
Q ss_pred ChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCC----ChHHHHHHHhhcCCCceEEEEecc
Q 003887 337 SKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG----FEPQIRSIVGQIRPDRQTLLFSAT 412 (789)
Q Consensus 337 ~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~----f~~~i~~il~~~~~~~q~ll~SAT 412 (789)
..... . -..+..+...+...... ...++||||-...+.... +...+..++..++....++++++.
T Consensus 91 ~~~~~--------~--~~~~~~l~~~i~~~i~~-~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~~ 159 (226)
T PF06745_consen 91 ERIGW--------S--PNDLEELLSKIREAIEE-LKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTSE 159 (226)
T ss_dssp GGST---------T--SCCHHHHHHHHHHHHHH-HTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred ccccc--------c--ccCHHHHHHHHHHHHHh-cCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEEc
Confidence 00000 0 12334444444322111 133789999999873222 233455556666555566667666
Q ss_pred C
Q 003887 413 M 413 (789)
Q Consensus 413 l 413 (789)
.
T Consensus 160 ~ 160 (226)
T PF06745_consen 160 M 160 (226)
T ss_dssp E
T ss_pred c
Confidence 3
No 351
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=90.18 E-value=0.74 Score=51.21 Aligned_cols=50 Identities=18% Similarity=0.296 Sum_probs=33.5
Q ss_pred CCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhc
Q 003887 221 PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMD 289 (789)
Q Consensus 221 P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~ 289 (789)
|..+.++.++++++.+++.+. .....++++++||||||.. +..++.++..
T Consensus 126 ~~~~~~l~~lgl~~~~~~~l~------------------~~~GlilI~G~TGSGKTT~-l~al~~~i~~ 175 (372)
T TIGR02525 126 PSDIPDLKQMGIEPDLFNSLL------------------PAAGLGLICGETGSGKSTL-AASIYQHCGE 175 (372)
T ss_pred CCcCCCHHHcCCCHHHHHHHH------------------hcCCEEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 333446778888876544332 1234688999999999985 5667777654
No 352
>PHA00729 NTP-binding motif containing protein
Probab=90.17 E-value=2.2 Score=43.91 Aligned_cols=74 Identities=14% Similarity=0.199 Sum_probs=38.7
Q ss_pred cEEEeCHHHHHHHHhhccccccceeEEEEcccchhcc-CCCh----HHHHHHHhhcCCCceEEEEeccCcHHHHHHHHH
Q 003887 350 EIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD-LGFE----PQIRSIVGQIRPDRQTLLFSATMPRKVEKLARE 423 (789)
Q Consensus 350 dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~-~~f~----~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~ 423 (789)
..++.+...|...+........++++||||++=.-+. ..|. .....+...++...+++.+...-+..+...++.
T Consensus 60 ~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 60 NSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred cEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 4555555556555543222234567899999431111 0011 122234444455566777777766666666555
No 353
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=90.16 E-value=1.2 Score=50.06 Aligned_cols=132 Identities=17% Similarity=0.102 Sum_probs=73.5
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003887 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~ 325 (789)
..+-..|..+.-..-.|.- .+.+=.|||||.. |+.-+.++... ...-+++|.+-|+.|+.++...+.+|+-..
T Consensus 161 anfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~-La~Kaa~lh~k-----nPd~~I~~Tfftk~L~s~~r~lv~~F~f~~ 233 (660)
T COG3972 161 ANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTEL-LAHKAAELHSK-----NPDSRIAFTFFTKILASTMRTLVPEFFFMR 233 (660)
T ss_pred hcccchhheeeeecCCchh-hhhcccCCCchhH-HHHHHHHHhcC-----CCCceEEEEeehHHHHHHHHHHHHHHHHHH
Confidence 3344556666544444444 5567789999986 33334444332 234568999999999999999998887432
Q ss_pred --------CcEEEEEEcCCChHHH---HHHHhcCCcEEEeCHH----HHHHHHhhccccccceeEEEEcccchh
Q 003887 326 --------GIRVSAVYGGMSKLDQ---FKELKAGCEIVIATPG----RLIDMLKMKALTMSRVTYLVLDEADRM 384 (789)
Q Consensus 326 --------~i~v~~~~gg~~~~~~---~~~l~~~~dIiV~Tp~----~L~~~l~~~~~~l~~i~~lVlDEah~m 384 (789)
.+.++.-.||.+.... .+....-..+-++--+ .+-.-+.....+..-+++|.|||++-.
T Consensus 234 ~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~~~~~~~yD~ilIDE~QDF 307 (660)
T COG3972 234 VEKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIADINNKKAYDYILIDESQDF 307 (660)
T ss_pred hhcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHhhhccccccEEEecccccC
Confidence 2334444556554322 2222111222222111 111111122234667899999999963
No 354
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.09 E-value=1.2 Score=52.49 Aligned_cols=44 Identities=25% Similarity=0.323 Sum_probs=26.9
Q ss_pred ccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEeccCcH
Q 003887 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPR 415 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~ 415 (789)
....+++||||+|+|....+ +.+.+.+...+....+|+.+ |-+.
T Consensus 116 ~~~~KVvIIDEah~Lt~~A~-NALLK~LEEpp~~~~fIL~t-te~~ 159 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAGF-NALLKIVEEPPEHLIFIFAT-TEPE 159 (584)
T ss_pred cCCceEEEEECCCcCCHHHH-HHHHHHHhcCCCCeEEEEEe-CChH
Confidence 35788999999999865432 34455555544444444444 5443
No 355
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=90.07 E-value=1.1 Score=48.33 Aligned_cols=66 Identities=29% Similarity=0.326 Sum_probs=41.0
Q ss_pred HHHHHcCCCCCcHHHHHHHHHH-HcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHH
Q 003887 238 HAISKQGYEKPTSIQCQALPII-LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (789)
Q Consensus 238 ~~l~~~g~~~ptpiQ~~ai~~i-l~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa 311 (789)
+.|.+.|. +++-|.+.|..+ ..+++++++++||||||.. +-.++..+...+ ..-+++++=.+.||.
T Consensus 109 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~~-----~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 109 DDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKND-----PTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhccC-----CCceEEEECCchhhc
Confidence 33444443 445555555544 4567999999999999974 455555543221 134577888887774
No 356
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.07 E-value=1.9 Score=47.38 Aligned_cols=16 Identities=25% Similarity=0.549 Sum_probs=14.6
Q ss_pred CCEEEEccCCChhhHH
Q 003887 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvl~~a~TGsGKTla 278 (789)
+.+|+.+|+|+|||+.
T Consensus 246 kgvLm~GPPGTGKTlL 261 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLL 261 (491)
T ss_pred ceeeeeCCCCCcHHHH
Confidence 6899999999999974
No 357
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.90 E-value=1 Score=53.22 Aligned_cols=19 Identities=21% Similarity=0.186 Sum_probs=15.2
Q ss_pred CCEEEEccCCChhhHHHHH
Q 003887 263 RDIIGIAKTGSGKTAAFVL 281 (789)
Q Consensus 263 rdvl~~a~TGsGKTla~ll 281 (789)
..+|+.++.|+|||.++.+
T Consensus 39 ha~Lf~GPpG~GKTtiAri 57 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARI 57 (624)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3578899999999987443
No 358
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=89.88 E-value=0.74 Score=51.04 Aligned_cols=49 Identities=18% Similarity=0.293 Sum_probs=31.7
Q ss_pred CCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHh
Q 003887 221 PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (789)
Q Consensus 221 P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~ 288 (789)
|..+.+++++++++.+.+.+. ..+.-+++++|||||||.. +-.++.++.
T Consensus 111 ~~~~~~l~~l~~~~~~~~~~~------------------~~~glilI~GpTGSGKTTt-L~aLl~~i~ 159 (358)
T TIGR02524 111 PAEPPKLSKLDLPAAIIDAIA------------------PQEGIVFITGATGSGKSTL-LAAIIRELA 159 (358)
T ss_pred CCCCCCHHHcCCCHHHHHHHh------------------ccCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 444566777777654433221 1445789999999999985 455556554
No 359
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=89.79 E-value=6.7 Score=45.84 Aligned_cols=128 Identities=16% Similarity=0.203 Sum_probs=79.0
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhh-cCcE-EEEEEcCCChH
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS-HGIR-VSAVYGGMSKL 339 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~-~~i~-v~~~~gg~~~~ 339 (789)
.+-.+..-|=--|||. |+.|++..++.. -.+-++.+++.-+..++-+.+++..-+.. ++-+ ++..-
T Consensus 202 QkaTVFLVPRRHGKTW-f~VpiIsllL~s-----~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k------ 269 (668)
T PHA03372 202 QKATVFLVPRRHGKTW-FIIPIISFLLKN-----IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENK------ 269 (668)
T ss_pred ccceEEEecccCCcee-hHHHHHHHHHHh-----hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeec------
Confidence 4566778899999998 689999888763 34677999999998888777766543321 1111 11111
Q ss_pred HHHHHHhcCCcEEEeCHHHH-----HHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhc-CCCceEEEEeccC
Q 003887 340 DQFKELKAGCEIVIATPGRL-----IDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPDRQTLLFSATM 413 (789)
Q Consensus 340 ~~~~~l~~~~dIiV~Tp~~L-----~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~-~~~~q~ll~SATl 413 (789)
+-.|.+.-|+.= ......+...-..+.+|+|||||-+. ...+..|+..+ ..++++|+.|.|-
T Consensus 270 --------~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q~~~KiIfISS~N 337 (668)
T PHA03372 270 --------DNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQNTTKIIFISSTN 337 (668)
T ss_pred --------CcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC----HHHHHHhhhhhcccCceEEEEeCCC
Confidence 112333322211 11122233445578999999999644 23455566555 3578889999884
No 360
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=89.69 E-value=1.6 Score=48.68 Aligned_cols=135 Identities=16% Similarity=0.168 Sum_probs=63.2
Q ss_pred CEEEEccCCChhhHHHHHHHHHHHhcCcccccC---CCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEE-cCCChH
Q 003887 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKE---EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVY-GGMSKL 339 (789)
Q Consensus 264 dvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~---~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~-gg~~~~ 339 (789)
-.|+.+|.|+||+.. ...+...++........ ..+..+-+|+.-..|.++ .... .-++..+.-. .+...
T Consensus 43 A~Lf~Gp~G~GK~~l-A~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i----~~~~-HPDl~~i~~~~~~~~~- 115 (365)
T PRK07471 43 AWLIGGPQGIGKATL-AYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRI----AAGA-HGGLLTLERSWNEKGK- 115 (365)
T ss_pred eEEEECCCCCCHHHH-HHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHH----HccC-CCCeEEEecccccccc-
Confidence 488999999999986 44555666544311100 012334445543333322 1111 1133322110 01000
Q ss_pred HHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEeccC
Q 003887 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (789)
Q Consensus 340 ~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl 413 (789)
.....|.|-..-.+...+... .......+|||||+|+|-.. -.+.+.+.+...+....+|++|...
T Consensus 116 ------~~~~~I~VdqiR~l~~~~~~~-~~~~~~kVviIDead~m~~~-aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 116 ------RLRTVITVDEVRELISFFGLT-AAEGGWRVVIVDTADEMNAN-AANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred ------cccccccHHHHHHHHHHhCcC-cccCCCEEEEEechHhcCHH-HHHHHHHHHhcCCCCeEEEEEECCc
Confidence 001234333333333333222 12356789999999987432 2344555666544455555555443
No 361
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.59 E-value=0.86 Score=54.00 Aligned_cols=45 Identities=18% Similarity=0.287 Sum_probs=26.0
Q ss_pred ccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHH
Q 003887 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRK 416 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~ 416 (789)
..+++++||||+|+|....|. .+.+.+...+....+|+ .+|-+..
T Consensus 122 ~g~~KV~IIDEvh~Ls~~a~N-aLLKtLEEPP~~~~fIL-~Ttd~~k 166 (618)
T PRK14951 122 QGRFKVFMIDEVHMLTNTAFN-AMLKTLEEPPEYLKFVL-ATTDPQK 166 (618)
T ss_pred cCCceEEEEEChhhCCHHHHH-HHHHhcccCCCCeEEEE-EECCchh
Confidence 356899999999997654432 34444444344444444 4454433
No 362
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=89.43 E-value=3.3 Score=43.66 Aligned_cols=115 Identities=14% Similarity=0.110 Sum_probs=57.7
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHH
Q 003887 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (789)
Q Consensus 263 rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~ 342 (789)
.=+++.|.+|.|||.. ++-+..++... .+..++++..= .-..++...+-... .++....+..+.-....+
T Consensus 20 ~L~vi~a~pg~GKT~~-~l~ia~~~a~~------~~~~vly~SlE-m~~~~l~~R~la~~--s~v~~~~i~~g~l~~~e~ 89 (259)
T PF03796_consen 20 ELTVIAARPGVGKTAF-ALQIALNAALN------GGYPVLYFSLE-MSEEELAARLLARL--SGVPYNKIRSGDLSDEEF 89 (259)
T ss_dssp -EEEEEESTTSSHHHH-HHHHHHHHHHT------TSSEEEEEESS-S-HHHHHHHHHHHH--HTSTHHHHHCCGCHHHHH
T ss_pred cEEEEEecccCCchHH-HHHHHHHHHHh------cCCeEEEEcCC-CCHHHHHHHHHHHh--hcchhhhhhccccCHHHH
Confidence 3477889999999985 55555554332 13557777652 11222222222211 122221122232222222
Q ss_pred HHHh------cCCcEEE-e----CHHHHHHHHhhccccccceeEEEEcccchhccC
Q 003887 343 KELK------AGCEIVI-A----TPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL 387 (789)
Q Consensus 343 ~~l~------~~~dIiV-~----Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~ 387 (789)
..+. ....++| . |+..|...+..-......+.+||||=.|.|...
T Consensus 90 ~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~ 145 (259)
T PF03796_consen 90 ERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSE 145 (259)
T ss_dssp HHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTS
T ss_pred HHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCC
Confidence 2221 1233443 3 455566555443333378899999999988763
No 363
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=89.43 E-value=1.9 Score=50.93 Aligned_cols=44 Identities=11% Similarity=0.237 Sum_probs=24.5
Q ss_pred ccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEeccCcH
Q 003887 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPR 415 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~ 415 (789)
...+.++||||+|+|....+. .+.+.+...+... ++++.+|-+.
T Consensus 117 ~~~~kViIIDE~~~Lt~~a~n-aLLKtLEepp~~~-ifIlatt~~~ 160 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGAFN-ALLKTLEEPPAHV-IFILATTEPH 160 (559)
T ss_pred cCCeEEEEEECcccCCHHHHH-HHHHHhcCCCCCe-EEEEEeCChh
Confidence 457889999999987543222 3334444433333 3444445443
No 364
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=89.22 E-value=7.1 Score=43.40 Aligned_cols=109 Identities=15% Similarity=0.174 Sum_probs=59.3
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHH
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~ 341 (789)
.+.+.+.++.|.|||. ++-++...+.. ..+.+ ++..+.+.+++..+.++. ++...-..
T Consensus 62 ~~GlYl~G~vG~GKT~--Lmd~f~~~lp~-----~~k~R----~HFh~Fm~~vh~~l~~~~-----------~~~~~l~~ 119 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTM--LMDLFYDSLPI-----KRKRR----VHFHEFMLDVHSRLHQLR-----------GQDDPLPQ 119 (362)
T ss_pred CceEEEECCCCCchhH--HHHHHHHhCCc-----ccccc----ccccHHHHHHHHHHHHHh-----------CCCccHHH
Confidence 3678899999999996 34444333221 01111 355678888888877774 11111111
Q ss_pred HHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhc-CCCceEEEEeccCcHH
Q 003887 342 FKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPDRQTLLFSATMPRK 416 (789)
Q Consensus 342 ~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~-~~~~q~ll~SATl~~~ 416 (789)
+.+.+ .....+|+|||.|- -|.+-.-.+..++..+ ....-+|+.|-+.|.+
T Consensus 120 -----------------va~~l------~~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~ 171 (362)
T PF03969_consen 120 -----------------VADEL------AKESRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPED 171 (362)
T ss_pred -----------------HHHHH------HhcCCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHH
Confidence 11111 23456899999994 1222122333444443 3455667777777755
No 365
>CHL00181 cbbX CbbX; Provisional
Probab=89.13 E-value=2.6 Score=45.31 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=15.2
Q ss_pred CCCEEEEccCCChhhHHH
Q 003887 262 GRDIIGIAKTGSGKTAAF 279 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~ 279 (789)
+.++++.+++|+|||..+
T Consensus 59 ~~~ill~G~pGtGKT~lA 76 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVA 76 (287)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456899999999999763
No 366
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=89.12 E-value=2.7 Score=51.29 Aligned_cols=44 Identities=11% Similarity=0.245 Sum_probs=25.6
Q ss_pred eEEEEcccchhccCCC----hHHHHHHHhhcCCCceEEEEeccCcHHH
Q 003887 374 TYLVLDEADRMFDLGF----EPQIRSIVGQIRPDRQTLLFSATMPRKV 417 (789)
Q Consensus 374 ~~lVlDEah~m~~~~f----~~~i~~il~~~~~~~q~ll~SATl~~~v 417 (789)
.+|+|||+|.+...+- ...+..++..+-...++.++.||-+++.
T Consensus 280 ~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~ 327 (758)
T PRK11034 280 SILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF 327 (758)
T ss_pred CEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHH
Confidence 4899999999875442 1223333433333445666677765554
No 367
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=89.10 E-value=6.2 Score=43.06 Aligned_cols=134 Identities=19% Similarity=0.281 Sum_probs=64.6
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEE-cCc-HHHHHHHHHHHHHHhhhcCcEEEEEEcCCChH
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC-APT-RELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl-~PT-reLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~ 339 (789)
+.-+++++++|+|||+.. ..|...+.. .+.+++++ +.+ |..+.+ .+..++...++.+.....+....
T Consensus 114 ~~vi~lvGpnGsGKTTt~--~kLA~~l~~------~g~~V~Li~~D~~r~~a~e---ql~~~a~~~~i~~~~~~~~~dpa 182 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTI--GKLAHKYKA------QGKKVLLAAGDTFRAAAIE---QLQVWGERVGVPVIAQKEGADPA 182 (318)
T ss_pred CeEEEEECCCCCcHHHHH--HHHHHHHHh------cCCeEEEEecCccchhhHH---HHHHHHHHcCceEEEeCCCCCHH
Confidence 345778999999999763 333333321 23445544 444 333321 23334443355443332221110
Q ss_pred HHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccC-CChHHHHHHHhhc------CCCceEEEEecc
Q 003887 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQI------RPDRQTLLFSAT 412 (789)
Q Consensus 340 ~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~-~f~~~i~~il~~~------~~~~q~ll~SAT 412 (789)
....+.+.. .....+++||||=+-++... .....+..+...+ .+..-++.++||
T Consensus 183 -----------------~~v~~~l~~--~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~ 243 (318)
T PRK10416 183 -----------------SVAFDAIQA--AKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDAT 243 (318)
T ss_pred -----------------HHHHHHHHH--HHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECC
Confidence 001111111 11356788999988875422 1223344443322 244457888999
Q ss_pred CcHHHHHHHHHHh
Q 003887 413 MPRKVEKLAREIL 425 (789)
Q Consensus 413 l~~~v~~l~~~~l 425 (789)
...+....+..+.
T Consensus 244 ~g~~~~~~a~~f~ 256 (318)
T PRK10416 244 TGQNALSQAKAFH 256 (318)
T ss_pred CChHHHHHHHHHH
Confidence 7654444455554
No 368
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=89.07 E-value=1.1 Score=49.26 Aligned_cols=44 Identities=23% Similarity=0.223 Sum_probs=29.8
Q ss_pred HHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHH
Q 003887 259 ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (789)
Q Consensus 259 il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa 311 (789)
+..+++++++++||||||.. +-.++.++- ..-+++++=-+.||.
T Consensus 157 v~~~~nili~G~tgSGKTTl-l~aL~~~ip--------~~~ri~tiEd~~El~ 200 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTF-TNAALREIP--------AIERLITVEDAREIV 200 (332)
T ss_pred HHcCCcEEEECCCCCCHHHH-HHHHHhhCC--------CCCeEEEecCCCccc
Confidence 44678999999999999974 555555541 234566665566654
No 369
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=89.00 E-value=0.88 Score=53.34 Aligned_cols=88 Identities=19% Similarity=0.306 Sum_probs=72.1
Q ss_pred HHHHHHhcCCCCCCCcEEEEeccc----ccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhh-h
Q 003887 457 LPWLLEKLPGMIDDGDVLVFASKK----TTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA-A 531 (789)
Q Consensus 457 ~~~L~~~L~~~~~~~kvLVF~~s~----~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~-~ 531 (789)
...++..+.....+.++.+-+||- .++..+.++|...++.+..+.|.+....|..++....+|.++|+|.|-++ .
T Consensus 298 vVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ 377 (677)
T COG1200 298 VVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ 377 (677)
T ss_pred HHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh
Confidence 344555555444566899999994 55667777777789999999999999999999999999999999999665 6
Q ss_pred ccCCCCCccEEEE
Q 003887 532 RGLDIKSIKSVVN 544 (789)
Q Consensus 532 ~GlDI~~v~~VI~ 544 (789)
..+++.++-.||.
T Consensus 378 d~V~F~~LgLVIi 390 (677)
T COG1200 378 DKVEFHNLGLVII 390 (677)
T ss_pred cceeecceeEEEE
Confidence 7899998888885
No 370
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=88.91 E-value=1.8 Score=48.59 Aligned_cols=45 Identities=22% Similarity=0.368 Sum_probs=26.8
Q ss_pred ccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHH
Q 003887 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRK 416 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~ 416 (789)
....+++||||+|+|.... .+.+.+.+..-++.. ++++.+|-+..
T Consensus 115 ~~~~kViiIDead~m~~~a-anaLLk~LEep~~~~-~fIL~a~~~~~ 159 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERA-ANALLKAVEEPPPRT-VWLLCAPSPED 159 (394)
T ss_pred cCCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCC-eEEEEECChHH
Confidence 3567899999999985432 244555555544444 44455554433
No 371
>PF05729 NACHT: NACHT domain
Probab=88.80 E-value=2.3 Score=40.71 Aligned_cols=38 Identities=18% Similarity=0.329 Sum_probs=23.3
Q ss_pred EEEEcccchhccCC-------ChHHHHHHHhh-cCCCceEEEEecc
Q 003887 375 YLVLDEADRMFDLG-------FEPQIRSIVGQ-IRPDRQTLLFSAT 412 (789)
Q Consensus 375 ~lVlDEah~m~~~~-------f~~~i~~il~~-~~~~~q~ll~SAT 412 (789)
+||||-+|.+.... +...+..++.. +.+..++++.|.+
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~ 129 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRP 129 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcC
Confidence 49999999877632 22344455554 4556666666654
No 372
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=88.78 E-value=0.61 Score=51.36 Aligned_cols=45 Identities=24% Similarity=0.221 Sum_probs=30.7
Q ss_pred HHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHH
Q 003887 258 IILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (789)
Q Consensus 258 ~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa 311 (789)
++..+++++++++||||||.. +-.++.++ ....+++.+-.+.||.
T Consensus 158 ~v~~~~nilI~G~tGSGKTTl-l~aLl~~i--------~~~~rivtiEd~~El~ 202 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTM-SKTLISAI--------PPQERLITIEDTLELV 202 (344)
T ss_pred HHHcCCeEEEECCCCccHHHH-HHHHHccc--------CCCCCEEEECCCcccc
Confidence 345678999999999999974 44444443 1133467777887764
No 373
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=88.74 E-value=1.3 Score=45.38 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=13.6
Q ss_pred CEEEEccCCChhhHH
Q 003887 264 DIIGIAKTGSGKTAA 278 (789)
Q Consensus 264 dvl~~a~TGsGKTla 278 (789)
++|+.+|+|+|||..
T Consensus 52 h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTL 66 (233)
T ss_dssp EEEEESSTTSSHHHH
T ss_pred eEEEECCCccchhHH
Confidence 689999999999974
No 374
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.74 E-value=5.5 Score=46.68 Aligned_cols=40 Identities=10% Similarity=0.063 Sum_probs=25.1
Q ss_pred ccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEe
Q 003887 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~S 410 (789)
.....++||||||+|-... ...+.+.+...+....+|+.+
T Consensus 117 ~g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 3567899999999976532 234555555544455555544
No 375
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.68 E-value=2.8 Score=49.87 Aligned_cols=40 Identities=10% Similarity=0.114 Sum_probs=23.3
Q ss_pred ccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEe
Q 003887 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~S 410 (789)
+....+|||||+|.|.... ...+.+.+...+...-+|+.+
T Consensus 125 ~~~~KVvIIdEad~Lt~~a-~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAA-FNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred cCCCEEEEEeChhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 5678899999999976432 223444444444343344433
No 376
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=88.59 E-value=6.3 Score=43.38 Aligned_cols=142 Identities=17% Similarity=0.127 Sum_probs=73.4
Q ss_pred CcHHHHHHHHHHHcCCCE------EEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003887 248 PTSIQCQALPIILSGRDI------IGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 248 ptpiQ~~ai~~il~grdv------l~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~ 321 (789)
-+..|...+..++...++ ++.|.+|+|||.. +..++.+. +-+ .+++.+- =|.-+.-.+.++
T Consensus 10 ~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~-~r~~l~~~---------n~~-~vw~n~~--ecft~~~lle~I 76 (438)
T KOG2543|consen 10 CRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYL-VRQLLRKL---------NLE-NVWLNCV--ECFTYAILLEKI 76 (438)
T ss_pred chHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHH-HHHHHhhc---------CCc-ceeeehH--HhccHHHHHHHH
Confidence 467888999888876553 8899999999965 33333332 111 3555542 122233333333
Q ss_pred hhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhh--ccccccceeEEEEcccchhccCCC--hHHHHHHH
Q 003887 322 AKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM--KALTMSRVTYLVLDEADRMFDLGF--EPQIRSIV 397 (789)
Q Consensus 322 ~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~--~~~~l~~i~~lVlDEah~m~~~~f--~~~i~~il 397 (789)
+...+ .+-..|........ +...++..+.+ ........-+||+|-||.+.|++- .+.+..+-
T Consensus 77 L~~~~---~~d~dg~~~~~~~e-----------n~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~ 142 (438)
T KOG2543|consen 77 LNKSQ---LADKDGDKVEGDAE-----------NFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLY 142 (438)
T ss_pred HHHhc---cCCCchhhhhhHHH-----------HHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHH
Confidence 32211 00000100000000 11112222222 112224567899999999998762 23444444
Q ss_pred hhcCCCceEEEEeccCcHH
Q 003887 398 GQIRPDRQTLLFSATMPRK 416 (789)
Q Consensus 398 ~~~~~~~q~ll~SATl~~~ 416 (789)
..++.+.-.|++|+++++.
T Consensus 143 el~~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 143 ELLNEPTIVIILSAPSCEK 161 (438)
T ss_pred HHhCCCceEEEEeccccHH
Confidence 5555556678889998754
No 377
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=88.52 E-value=0.75 Score=55.19 Aligned_cols=92 Identities=22% Similarity=0.346 Sum_probs=76.1
Q ss_pred CCcchHHHHHHhcCCCCCCC-cEEEEecccccHHHHHHHHHHc-CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehh
Q 003887 452 SDAEKLPWLLEKLPGMIDDG-DVLVFASKKTTVDEIESQLAQK-GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDV 529 (789)
Q Consensus 452 ~~~~k~~~L~~~L~~~~~~~-kvLVF~~s~~~a~~l~~~L~~~-g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v 529 (789)
..+.|.+.+++++.+.+..| .+||.++-+.....+...|+.. +.++.++|++++..+|.....+.++|+.+|+|.|..
T Consensus 226 TGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRS 305 (730)
T COG1198 226 TGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRS 305 (730)
T ss_pred CCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEech
Confidence 45778888888887766666 7999999999999888888754 889999999999999999999999999999999954
Q ss_pred hhccCCCCCccEEEE
Q 003887 530 AARGLDIKSIKSVVN 544 (789)
Q Consensus 530 ~~~GlDI~~v~~VI~ 544 (789)
+- =+-++++-.||.
T Consensus 306 Al-F~Pf~~LGLIIv 319 (730)
T COG1198 306 AL-FLPFKNLGLIIV 319 (730)
T ss_pred hh-cCchhhccEEEE
Confidence 32 235666666664
No 378
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.52 E-value=3.8 Score=48.67 Aligned_cols=41 Identities=15% Similarity=0.344 Sum_probs=23.3
Q ss_pred ccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEecc
Q 003887 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT 412 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT 412 (789)
+....+|||||+|.|....+ ..+.+.+...+.. .++++.++
T Consensus 118 ~~~~kVvIIDEa~~L~~~a~-naLLk~LEepp~~-tv~Il~t~ 158 (585)
T PRK14950 118 LARYKVYIIDEVHMLSTAAF-NALLKTLEEPPPH-AIFILATT 158 (585)
T ss_pred cCCeEEEEEeChHhCCHHHH-HHHHHHHhcCCCC-eEEEEEeC
Confidence 45788999999998754322 2333444443333 34444444
No 379
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=88.42 E-value=0.36 Score=61.86 Aligned_cols=93 Identities=24% Similarity=0.305 Sum_probs=74.7
Q ss_pred EEEEecccccHHHHHHHHHHcC-CceeeccCCCC-----------HHHHHHHHHHhhcCCccEEEeehhhhccCCCCCcc
Q 003887 473 VLVFASKKTTVDEIESQLAQKG-FKAAALHGDKD-----------QASRMEILQKFKSGVYHVLIATDVAARGLDIKSIK 540 (789)
Q Consensus 473 vLVF~~s~~~a~~l~~~L~~~g-~~v~~lhg~~~-----------~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~ 540 (789)
.++||+....+..+...+.... +.+..+.|.+. +..+.+++..|....+++|++|.++..|+|++.++
T Consensus 295 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~~ 374 (1606)
T KOG0701|consen 295 GIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKCN 374 (1606)
T ss_pred heeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhhh
Confidence 4788888888877777776542 23333444322 23467899999999999999999999999999999
Q ss_pred EEEEEcCCCCHHHHHHHHhhcCCCC
Q 003887 541 SVVNFDIARDMDMHVHRIGRTGRAG 565 (789)
Q Consensus 541 ~VI~~d~p~s~~~y~QriGR~gR~G 565 (789)
.|+.++.|.....|+|+.||+-++.
T Consensus 375 ~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 375 LVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hheeccCcchHHHHHHhhcccccch
Confidence 9999999999999999999987665
No 380
>PRK11823 DNA repair protein RadA; Provisional
Probab=88.37 E-value=2.5 Score=48.41 Aligned_cols=57 Identities=23% Similarity=0.318 Sum_probs=35.4
Q ss_pred HHHHHc-----CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003887 256 LPIILS-----GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 256 i~~il~-----grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~ 321 (789)
+..++. |.-+++.+++|+|||+. ++-++..+.. .+.++|++.- .+-..|+...+.++
T Consensus 69 LD~~LgGGi~~Gs~~lI~G~pG~GKTtL-~lq~a~~~a~-------~g~~vlYvs~-Ees~~qi~~ra~rl 130 (446)
T PRK11823 69 LDRVLGGGLVPGSVVLIGGDPGIGKSTL-LLQVAARLAA-------AGGKVLYVSG-EESASQIKLRAERL 130 (446)
T ss_pred HHHHhcCCccCCEEEEEECCCCCCHHHH-HHHHHHHHHh-------cCCeEEEEEc-cccHHHHHHHHHHc
Confidence 445554 45678899999999985 3434343322 2456788764 45566776665554
No 381
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.27 E-value=3.7 Score=47.32 Aligned_cols=16 Identities=31% Similarity=0.289 Sum_probs=13.6
Q ss_pred EEEEccCCChhhHHHH
Q 003887 265 IIGIAKTGSGKTAAFV 280 (789)
Q Consensus 265 vl~~a~TGsGKTla~l 280 (789)
+|++||+|+|||..+.
T Consensus 39 ~Lf~GPpGtGKTTlA~ 54 (472)
T PRK14962 39 YIFAGPRGTGKTTVAR 54 (472)
T ss_pred EEEECCCCCCHHHHHH
Confidence 6899999999997633
No 382
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=88.22 E-value=5.5 Score=43.08 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=24.1
Q ss_pred ceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEe
Q 003887 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 372 ~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~S 410 (789)
...+|||||+|.+... ....+..++...++...+|+.+
T Consensus 102 ~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 4678999999987542 1234555666555556555544
No 383
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=88.14 E-value=5.4 Score=43.73 Aligned_cols=144 Identities=18% Similarity=0.166 Sum_probs=63.0
Q ss_pred EEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHH----HHHHHHHhhhcCcEEEEE--EcCCChH
Q 003887 266 IGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI----YLETKKFAKSHGIRVSAV--YGGMSKL 339 (789)
Q Consensus 266 l~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi----~~~~~k~~~~~~i~v~~~--~gg~~~~ 339 (789)
|+.++.|+|||.+..+.++.+++..+. ...++++ ||..-+... ...+..+... .+..... ....-.
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~-----~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~- 72 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP-----GRRVIIA-STYRQARDIFGRFWKGIIELLPS-WFEIKFNEWNDRKII- 72 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS-------EEEEE-ESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-SSEEE-
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC-----CcEEEEe-cCHHHHHHHHHHhHHHHHHHHHH-hcCcccccCCCCcEE-
Confidence 567899999999988888888766532 2445555 655544442 2233333332 1221111 010000
Q ss_pred HHHHHHhcCCcEEEeCHHHH--HHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEeccC--cH
Q 003887 340 DQFKELKAGCEIVIATPGRL--IDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM--PR 415 (789)
Q Consensus 340 ~~~~~l~~~~dIiV~Tp~~L--~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl--~~ 415 (789)
+..+..|.+.+...- ..-+ .=..+++|||||+-.+.+..+...+...+.... ....+++|.|. ..
T Consensus 73 -----~~nG~~i~~~~~~~~~~~~~~-----~G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~p~~~~~ 141 (384)
T PF03237_consen 73 -----LPNGSRIQFRGADSPDSGDNI-----RGFEYDLIIIDEAAKVPDDAFSELIRRLRATWG-GSIRMYISTPPNPGG 141 (384)
T ss_dssp -----ETTS-EEEEES-----SHHHH-----HTS--SEEEEESGGGSTTHHHHHHHHHHHHCST-T--EEEEEE---SSS
T ss_pred -----ecCceEEEEeccccccccccc-----cccccceeeeeecccCchHHHHHHHHhhhhccc-CcceEEeecCCCCCC
Confidence 034566666663321 1111 124678999999887654433333333332222 22222455442 33
Q ss_pred HHHHHHHHHhCCC
Q 003887 416 KVEKLAREILSDP 428 (789)
Q Consensus 416 ~v~~l~~~~l~~p 428 (789)
.+..+......+.
T Consensus 142 ~~~~~~~~~~~~~ 154 (384)
T PF03237_consen 142 WFYEIFQRNLDDD 154 (384)
T ss_dssp HHHHHHHHHHCTS
T ss_pred ceeeeeehhhcCC
Confidence 4555566555554
No 384
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=88.08 E-value=1.5 Score=51.26 Aligned_cols=68 Identities=25% Similarity=0.490 Sum_probs=55.4
Q ss_pred EEEEecccccHHHHHHHHHHc-----CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeeh-----hhhcc-CCCCCccE
Q 003887 473 VLVFASKKTTVDEIESQLAQK-----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-----VAARG-LDIKSIKS 541 (789)
Q Consensus 473 vLVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-----v~~~G-lDI~~v~~ 541 (789)
+||+++|++-|..+++.+... ++.+..++|+++...+...++ .| .+|||+|+ .+.++ +++..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~---~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALK---RG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHh---cC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 999999999999998887653 567899999999876665444 46 99999994 56666 89999999
Q ss_pred EEE
Q 003887 542 VVN 544 (789)
Q Consensus 542 VI~ 544 (789)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 884
No 385
>PHA00012 I assembly protein
Probab=88.01 E-value=6.8 Score=42.45 Aligned_cols=58 Identities=24% Similarity=0.269 Sum_probs=35.3
Q ss_pred ccceeEEEEcccchhccCC-Ch----HHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCC
Q 003887 370 MSRVTYLVLDEADRMFDLG-FE----PQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSD 427 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~-f~----~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~ 427 (789)
...-.++||||||..+... +. ..+...+...+...--++|-.--+..+...++..+..
T Consensus 79 ep~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh~G~DvilITQ~ps~VDs~IR~ll~e 141 (361)
T PHA00012 79 ESKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHARKLGWDIIFIIQDISIMDKQAREALAE 141 (361)
T ss_pred CCCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhccCCceEEEEcCCHHHHhHHHHHhhhh
Confidence 3456789999999887632 22 3355656666655555555444555666666655443
No 386
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=88.01 E-value=6.4 Score=48.17 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=14.6
Q ss_pred CCEEEEccCCChhhHH
Q 003887 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvl~~a~TGsGKTla 278 (789)
.++|+.+++|+|||..
T Consensus 204 ~n~lL~G~pG~GKT~l 219 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAI 219 (731)
T ss_pred CceEEECCCCCCHHHH
Confidence 5899999999999976
No 387
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.96 E-value=1.7 Score=52.26 Aligned_cols=44 Identities=20% Similarity=0.309 Sum_probs=38.4
Q ss_pred ceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEeccCcH
Q 003887 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPR 415 (789)
Q Consensus 372 ~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~ 415 (789)
..=++|||..|++.+......+..++++.|++.+.++.|-+-|+
T Consensus 129 ~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 129 GPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred CceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 34589999999999988888999999999999999999888653
No 388
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.94 E-value=1.6 Score=50.74 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=16.3
Q ss_pred EEEEccCCChhhHHHHHHHHHHH
Q 003887 265 IIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 265 vl~~a~TGsGKTla~llp~l~~l 287 (789)
+|+++|.|+|||.++. .+..++
T Consensus 39 ~Lf~GppGtGKTTlA~-~lA~~l 60 (504)
T PRK14963 39 YLFSGPRGVGKTTTAR-LIAMAV 60 (504)
T ss_pred EEEECCCCCCHHHHHH-HHHHHH
Confidence 5999999999998743 344444
No 389
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=87.80 E-value=3 Score=44.73 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=15.5
Q ss_pred CCCEEEEccCCChhhHHH
Q 003887 262 GRDIIGIAKTGSGKTAAF 279 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~ 279 (789)
+.++++.+++|+|||.++
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 458999999999999764
No 390
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=87.77 E-value=1 Score=54.87 Aligned_cols=62 Identities=19% Similarity=0.318 Sum_probs=52.1
Q ss_pred CCCcEEEEecccccHHHHHHHHHHcC-----Cceee-ccCCCCHHHHHHHHHHhhcCCccEEEeehhh
Q 003887 469 DDGDVLVFASKKTTVDEIESQLAQKG-----FKAAA-LHGDKDQASRMEILQKFKSGVYHVLIATDVA 530 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g-----~~v~~-lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~ 530 (789)
.+.+++|.+||..-+.++++.|.... +.+.. +|+.|+..+++.++++|.+|..+|||+|...
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 34789999999998888888887642 44333 9999999999999999999999999999654
No 391
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=87.73 E-value=2.2 Score=46.61 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=26.7
Q ss_pred ccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEec
Q 003887 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSA 411 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SA 411 (789)
....+++|||+||+|-.. -.+.+.++++.-++...+|+.|.
T Consensus 105 ~g~~KV~iI~~a~~m~~~-AaNaLLKtLEEPp~~~~fiL~t~ 145 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEA-AANALLKTLEEPRPNTYFLLQAD 145 (325)
T ss_pred cCCceEEEEechhhhCHH-HHHHHHHHhcCCCCCeEEEEEEC
Confidence 356899999999998643 24456666666455554444443
No 392
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.72 E-value=4 Score=47.78 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=25.2
Q ss_pred ccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEe
Q 003887 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~S 410 (789)
..+++++||||+|+|....+ +.+.+.+...+....+|+.+
T Consensus 117 ~~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 45678999999998765332 34455555545555555544
No 393
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=87.64 E-value=4.2 Score=46.21 Aligned_cols=116 Identities=18% Similarity=0.157 Sum_probs=54.8
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHH
Q 003887 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~ 340 (789)
.|.=+++.|++|+|||.. ++-+..++.. ..+..++++. .-.-+.|+...+-.. ..++....+..+.-...
T Consensus 193 ~g~liviag~pg~GKT~~-al~ia~~~a~------~~g~~v~~fS-lEm~~~~l~~Rl~~~--~~~v~~~~~~~~~l~~~ 262 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTL-ALNIAENVAL------REGKPVLFFS-LEMSAEQLGERLLAS--KSGINTGNIRTGRFNDS 262 (421)
T ss_pred CCceEEEEeCCCCCHHHH-HHHHHHHHHH------hCCCcEEEEE-CCCCHHHHHHHHHHH--HcCCCHHHHhcCCCCHH
Confidence 345678899999999975 4545444421 1234466665 222333443322221 12332222222222222
Q ss_pred HHHHH------hcCCcEEEe-----CHHHHHHHHhhccccccceeEEEEcccchhcc
Q 003887 341 QFKEL------KAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMFD 386 (789)
Q Consensus 341 ~~~~l------~~~~dIiV~-----Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~ 386 (789)
.+..+ ..+..+.|. |...+...+++-......+++||||=.|.|..
T Consensus 263 ~~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~ 319 (421)
T TIGR03600 263 DFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAP 319 (421)
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCC
Confidence 22221 123455553 34444444332211122588999999887653
No 394
>PRK04841 transcriptional regulator MalT; Provisional
Probab=87.59 E-value=4.1 Score=51.01 Aligned_cols=44 Identities=16% Similarity=0.309 Sum_probs=34.5
Q ss_pred cceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEeccCc
Q 003887 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (789)
Q Consensus 371 ~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~ 414 (789)
..--+||||++|.+-+......+..++...++..++|+.|-+.|
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 34468999999998655556678888888888899988887754
No 395
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=87.48 E-value=2 Score=43.92 Aligned_cols=41 Identities=22% Similarity=0.223 Sum_probs=24.7
Q ss_pred cceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEecc
Q 003887 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT 412 (789)
Q Consensus 371 ~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT 412 (789)
.+.++||+||||.|-+- -...++..+..+....++.+..-+
T Consensus 112 grhKIiILDEADSMT~g-AQQAlRRtMEiyS~ttRFalaCN~ 152 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTAG-AQQALRRTMEIYSNTTRFALACNQ 152 (333)
T ss_pred CceeEEEeeccchhhhH-HHHHHHHHHHHHcccchhhhhhcc
Confidence 67789999999987652 233444555544444444444333
No 396
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.48 E-value=1.3 Score=52.23 Aligned_cols=143 Identities=18% Similarity=0.268 Sum_probs=76.5
Q ss_pred HcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEE-EcCcHHHHHHHHHHHHHHhhh------cCcEEEEE
Q 003887 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI-CAPTRELAHQIYLETKKFAKS------HGIRVSAV 332 (789)
Q Consensus 260 l~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLI-l~PTreLa~Qi~~~~~k~~~~------~~i~v~~~ 332 (789)
--|+.+.+++|.|+|||.+ +.+|.++++- ...++++ =+|-+++=.+|.+.---+... ..++-.+.
T Consensus 492 ~pGe~vALVGPSGsGKSTi--asLL~rfY~P------tsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~ 563 (716)
T KOG0058|consen 492 RPGEVVALVGPSGSGKSTI--ASLLLRFYDP------TSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIA 563 (716)
T ss_pred CCCCEEEEECCCCCCHHHH--HHHHHHhcCC------CCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHh
Confidence 3577899999999999975 5566776542 2333333 356666655553311111100 00111112
Q ss_pred EcCCCh-H-------------HHHHHHhcCCcEEEeCHHHHHHHHhhc-----cccccceeEEEEcccchhccCCChHHH
Q 003887 333 YGGMSK-L-------------DQFKELKAGCEIVIATPGRLIDMLKMK-----ALTMSRVTYLVLDEADRMFDLGFEPQI 393 (789)
Q Consensus 333 ~gg~~~-~-------------~~~~~l~~~~dIiV~Tp~~L~~~l~~~-----~~~l~~i~~lVlDEah~m~~~~f~~~i 393 (789)
||-... . +.+..+..+++=.|+.-|..+.-=++. .--+.+-.++|+|||-.-+|..-+..+
T Consensus 564 YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lV 643 (716)
T KOG0058|consen 564 YGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLV 643 (716)
T ss_pred cCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHH
Confidence 221111 0 112222334444444443332111111 112566789999999999998889999
Q ss_pred HHHHhhcCCCceEEEEec
Q 003887 394 RSIVGQIRPDRQTLLFSA 411 (789)
Q Consensus 394 ~~il~~~~~~~q~ll~SA 411 (789)
+..+..+..++ +++.=|
T Consensus 644 q~aL~~~~~~r-TVlvIA 660 (716)
T KOG0058|consen 644 QEALDRLMQGR-TVLVIA 660 (716)
T ss_pred HHHHHHhhcCC-eEEEEe
Confidence 99998887774 444434
No 397
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=87.33 E-value=6.2 Score=49.17 Aligned_cols=17 Identities=35% Similarity=0.472 Sum_probs=14.9
Q ss_pred CCEEEEccCCChhhHHH
Q 003887 263 RDIIGIAKTGSGKTAAF 279 (789)
Q Consensus 263 rdvl~~a~TGsGKTla~ 279 (789)
.++|+.+|+|+|||...
T Consensus 195 ~n~lL~G~pGvGKT~l~ 211 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIV 211 (852)
T ss_pred CceEEEcCCCCCHHHHH
Confidence 58999999999999763
No 398
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=87.29 E-value=11 Score=38.82 Aligned_cols=51 Identities=10% Similarity=0.059 Sum_probs=29.9
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~ 321 (789)
|.-+++.+++|+|||.....-+...+ . .+.+++++.= .+-..++.+.+..+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~-~-------~g~~~~y~~~-e~~~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGAL-K-------QGKKVYVITT-ENTSKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHH-h-------CCCEEEEEEc-CCCHHHHHHHHHHC
Confidence 35678899999999975333323222 2 2455666654 34444565555554
No 399
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=87.28 E-value=9 Score=37.95 Aligned_cols=53 Identities=19% Similarity=0.323 Sum_probs=39.9
Q ss_pred ccceeEEEEcccchhccCCCh--HHHHHHHhhcCCCceEEEEeccCcHHHHHHHH
Q 003887 370 MSRVTYLVLDEADRMFDLGFE--PQIRSIVGQIRPDRQTLLFSATMPRKVEKLAR 422 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~f~--~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~ 422 (789)
-..+++||+||+-..++.++. ..+..++...++...+|+..-.+|+.+.+++.
T Consensus 113 ~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD 167 (178)
T PRK07414 113 EGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIAD 167 (178)
T ss_pred CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCC
Confidence 356899999999988888864 45667777767677777777778887765543
No 400
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=87.17 E-value=2.2 Score=47.53 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=31.1
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~ 321 (789)
|.-+++.+++|+|||.. ++-+...+.. .+.++|++.-. +-..|+...+.++
T Consensus 82 GslvLI~G~pG~GKStL-llq~a~~~a~-------~g~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 82 GSVILIGGDPGIGKSTL-LLQVAARLAK-------RGGKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred CeEEEEEeCCCCCHHHH-HHHHHHHHHh-------cCCeEEEEECC-cCHHHHHHHHHHc
Confidence 45678899999999985 3333333322 23457777543 4455665555544
No 401
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.16 E-value=2.4 Score=49.00 Aligned_cols=95 Identities=23% Similarity=0.329 Sum_probs=70.3
Q ss_pred EEecCCCcchHH-HHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEE
Q 003887 447 VHVIPSDAEKLP-WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLI 525 (789)
Q Consensus 447 ~~~~~~~~~k~~-~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLV 525 (789)
+...+....|-. .++..+. ..+.+||.+|+++-+......|...++.+..++++.+..++..++.....+..+||+
T Consensus 30 lv~apTGsGKTl~y~lp~l~---~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~ 106 (470)
T TIGR00614 30 FVVMPTGGGKSLCYQLPALC---SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLY 106 (470)
T ss_pred EEEcCCCCcHhHHHHHHHHH---cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 334445555542 2233232 356899999999999988899999999999999999999999999999999999999
Q ss_pred eehh-hhcc------C-CCCCccEEEE
Q 003887 526 ATDV-AARG------L-DIKSIKSVVN 544 (789)
Q Consensus 526 aT~v-~~~G------l-DI~~v~~VI~ 544 (789)
+|.- +... + ....+.+||.
T Consensus 107 ~TPe~l~~~~~~~~~l~~~~~i~~iVi 133 (470)
T TIGR00614 107 VTPEKCSASNRLLQTLEERKGITLIAV 133 (470)
T ss_pred ECHHHHcCchhHHHHHHhcCCcCEEEE
Confidence 9953 2221 2 4556666664
No 402
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.10 E-value=1.2 Score=48.84 Aligned_cols=16 Identities=38% Similarity=0.526 Sum_probs=14.8
Q ss_pred CCEEEEccCCChhhHH
Q 003887 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvl~~a~TGsGKTla 278 (789)
||+++.+|+|+|||+.
T Consensus 385 RNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMF 400 (630)
T ss_pred hheeeeCCCCCCchHH
Confidence 7999999999999975
No 403
>PRK05973 replicative DNA helicase; Provisional
Probab=87.06 E-value=2.1 Score=44.59 Aligned_cols=65 Identities=20% Similarity=0.221 Sum_probs=37.6
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003887 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 247 ~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~ 321 (789)
.+||... ...-+..|.-+++.|++|+|||+.. +-++..... .|..++|+.- -+-..|+.+.+..+
T Consensus 50 ~~~p~~~-l~GGl~~Gsl~LIaG~PG~GKT~la-lqfa~~~a~-------~Ge~vlyfSl-Ees~~~i~~R~~s~ 114 (237)
T PRK05973 50 ATTPAEE-LFSQLKPGDLVLLGARPGHGKTLLG-LELAVEAMK-------SGRTGVFFTL-EYTEQDVRDRLRAL 114 (237)
T ss_pred CCCCHHH-hcCCCCCCCEEEEEeCCCCCHHHHH-HHHHHHHHh-------cCCeEEEEEE-eCCHHHHHHHHHHc
Confidence 4555322 3333445667889999999999854 333333322 2445677643 33455666666655
No 404
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=87.03 E-value=5.1 Score=43.90 Aligned_cols=39 Identities=18% Similarity=0.093 Sum_probs=26.7
Q ss_pred cHHHHHHHHHHHcC-----CCEEEEccCCChhhHHHHHHHHHHHh
Q 003887 249 TSIQCQALPIILSG-----RDIIGIAKTGSGKTAAFVLPMIVHIM 288 (789)
Q Consensus 249 tpiQ~~ai~~il~g-----rdvl~~a~TGsGKTla~llp~l~~l~ 288 (789)
.|+|...+..+... +-+|+.+|.|.|||..+.. +...++
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~-~a~~ll 46 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARF-AAQALL 46 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHH-HHHHHc
Confidence 57777777776633 2488999999999986433 334443
No 405
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=86.86 E-value=8.2 Score=41.86 Aligned_cols=129 Identities=20% Similarity=0.301 Sum_probs=72.9
Q ss_pred EEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcC-c-HHHHHHHHHHHHHHhhhcCcEEEEE-EcCCChHHH
Q 003887 265 IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP-T-RELAHQIYLETKKFAKSHGIRVSAV-YGGMSKLDQ 341 (789)
Q Consensus 265 vl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~P-T-reLa~Qi~~~~~k~~~~~~i~v~~~-~gg~~~~~~ 341 (789)
+++++-.|+|||+. +.=|.+.+.+ .|.++|+.+- | |+-| .++++.|....++.++.- +|+.+-.-.
T Consensus 142 il~vGVNG~GKTTT--IaKLA~~l~~------~g~~VllaA~DTFRAaA---iEQL~~w~er~gv~vI~~~~G~DpAaVa 210 (340)
T COG0552 142 ILFVGVNGVGKTTT--IAKLAKYLKQ------QGKSVLLAAGDTFRAAA---IEQLEVWGERLGVPVISGKEGADPAAVA 210 (340)
T ss_pred EEEEecCCCchHhH--HHHHHHHHHH------CCCeEEEEecchHHHHH---HHHHHHHHHHhCCeEEccCCCCCcHHHH
Confidence 67789999999986 4445554443 3566666543 3 4444 345666776667776652 233222111
Q ss_pred HHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccC-CChHHHHHHHhhcCCCc------eEEEEeccCc
Q 003887 342 FKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDR------QTLLFSATMP 414 (789)
Q Consensus 342 ~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~-~f~~~i~~il~~~~~~~------q~ll~SATl~ 414 (789)
.+.++. -.-..+++|++|=|=||-+. +.-..+.+|.+-+.+.. -++.+=||.-
T Consensus 211 ------------------fDAi~~--Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttG 270 (340)
T COG0552 211 ------------------FDAIQA--AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTG 270 (340)
T ss_pred ------------------HHHHHH--HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccC
Confidence 122221 12345677888888877653 24455566655554433 3444478887
Q ss_pred HHHHHHHHHH
Q 003887 415 RKVEKLAREI 424 (789)
Q Consensus 415 ~~v~~l~~~~ 424 (789)
.+....++.|
T Consensus 271 qnal~QAk~F 280 (340)
T COG0552 271 QNALSQAKIF 280 (340)
T ss_pred hhHHHHHHHH
Confidence 7666666655
No 406
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=86.85 E-value=1.9 Score=49.91 Aligned_cols=53 Identities=17% Similarity=0.285 Sum_probs=32.5
Q ss_pred CCCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHH
Q 003887 223 PVKTFEDCGFSTQLMHAISKQ---GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 223 pi~sf~~~~l~~~l~~~l~~~---g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla 278 (789)
|-.+|++.|--..+...|.-. .+..|--++.-.+.. -..+|+++|+|+|||+.
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~---PsGvLL~GPPGCGKTLl 561 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDA---PSGVLLCGPPGCGKTLL 561 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCC---CCceEEeCCCCccHHHH
Confidence 457899988766666655432 222333233222211 24699999999999975
No 407
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=86.83 E-value=0.5 Score=48.71 Aligned_cols=14 Identities=36% Similarity=0.477 Sum_probs=12.2
Q ss_pred EEEEccCCChhhHH
Q 003887 265 IIGIAKTGSGKTAA 278 (789)
Q Consensus 265 vl~~a~TGsGKTla 278 (789)
+++.|..|+|||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999985
No 408
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=86.81 E-value=1.5 Score=46.16 Aligned_cols=20 Identities=30% Similarity=0.302 Sum_probs=17.2
Q ss_pred HHcCCCEEEEccCCChhhHH
Q 003887 259 ILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 259 il~grdvl~~a~TGsGKTla 278 (789)
+-.|+.+++.++.|+|||..
T Consensus 13 i~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34788999999999999963
No 409
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=86.33 E-value=4.1 Score=44.89 Aligned_cols=40 Identities=10% Similarity=0.023 Sum_probs=27.1
Q ss_pred cHHHHHHHHHHHcC-----CCEEEEccCCChhhHHHHHHHHHHHhc
Q 003887 249 TSIQCQALPIILSG-----RDIIGIAKTGSGKTAAFVLPMIVHIMD 289 (789)
Q Consensus 249 tpiQ~~ai~~il~g-----rdvl~~a~TGsGKTla~llp~l~~l~~ 289 (789)
.|+|...+..+.+. +-+|+.++.|.||+..+ ..+...++.
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA-~~~A~~LlC 47 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFA-QHLAQGLLC 47 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHH-HHHHHHHcC
Confidence 57777777766542 35789999999999864 334444443
No 410
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=86.32 E-value=0.97 Score=50.11 Aligned_cols=27 Identities=26% Similarity=0.477 Sum_probs=19.8
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhc
Q 003887 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMD 289 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla~llp~l~~l~~ 289 (789)
..-|+|+.+|||||||+. .--|+.+++
T Consensus 225 eKSNvLllGPtGsGKTll--aqTLAr~ld 251 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLL--AQTLARVLD 251 (564)
T ss_pred ecccEEEECCCCCchhHH--HHHHHHHhC
Confidence 345899999999999964 444556544
No 411
>PRK13764 ATPase; Provisional
Probab=86.29 E-value=1.5 Score=51.72 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=20.9
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHh
Q 003887 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla~llp~l~~l~ 288 (789)
..+++|++++||||||.. +..++.++.
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 457899999999999974 555666653
No 412
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.28 E-value=4.4 Score=48.41 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=17.2
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHH
Q 003887 263 RDIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 263 rdvl~~a~TGsGKTla~llp~l~~l 287 (789)
+.+|+.|+.|+|||..+. .+...+
T Consensus 39 ~a~Lf~Gp~G~GKttlA~-~lAk~L 62 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSAR-ILAKSL 62 (620)
T ss_pred ceEEEECCCCCChHHHHH-HHHHHh
Confidence 457999999999998633 333444
No 413
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=86.28 E-value=0.8 Score=45.50 Aligned_cols=43 Identities=16% Similarity=0.335 Sum_probs=30.7
Q ss_pred ccceeEEEEcccchhccCCChHHHHHHHhhcCCC-ceEEEEecc
Q 003887 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD-RQTLLFSAT 412 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~-~q~ll~SAT 412 (789)
+....++++||...-++......+..++..+... .++|+.|--
T Consensus 114 ~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 114 IKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 3567899999999988877666776666665433 666666654
No 414
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=86.22 E-value=1.8 Score=51.02 Aligned_cols=18 Identities=28% Similarity=0.182 Sum_probs=14.7
Q ss_pred CCEEEEccCCChhhHHHH
Q 003887 263 RDIIGIAKTGSGKTAAFV 280 (789)
Q Consensus 263 rdvl~~a~TGsGKTla~l 280 (789)
+-+|+.||.|+|||..+.
T Consensus 39 hA~Lf~GP~GvGKTTlA~ 56 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAK 56 (605)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 358899999999998643
No 415
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=86.00 E-value=1.2 Score=44.26 Aligned_cols=50 Identities=20% Similarity=0.333 Sum_probs=28.9
Q ss_pred HHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHH
Q 003887 256 LPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI 314 (789)
Q Consensus 256 i~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi 314 (789)
..++-.++++++.+++|+|||..+ .++...++.. +..+++ +++.+|+..+
T Consensus 41 ~~~~~~~~~l~l~G~~G~GKThLa-~ai~~~~~~~-------g~~v~f-~~~~~L~~~l 90 (178)
T PF01695_consen 41 LEFIENGENLILYGPPGTGKTHLA-VAIANEAIRK-------GYSVLF-ITASDLLDEL 90 (178)
T ss_dssp H-S-SC--EEEEEESTTSSHHHHH-HHHHHHHHHT-------T--EEE-EEHHHHHHHH
T ss_pred CCCcccCeEEEEEhhHhHHHHHHH-HHHHHHhccC-------CcceeE-eecCceeccc
Confidence 344557789999999999999763 3444445432 444555 4566676554
No 416
>PRK06904 replicative DNA helicase; Validated
Probab=85.99 E-value=9.2 Score=44.16 Aligned_cols=115 Identities=15% Similarity=0.097 Sum_probs=56.1
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcC-CChHH
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGG-MSKLD 340 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg-~~~~~ 340 (789)
|.=+|+.|.+|+|||.. .+-+..++... .+..++|+.. ..-..|+...+.... .++....+..| .-..+
T Consensus 221 G~LiiIaarPg~GKTaf-alnia~~~a~~------~g~~Vl~fSl-EMs~~ql~~Rlla~~--s~v~~~~i~~g~~l~~~ 290 (472)
T PRK06904 221 SDLIIVAARPSMGKTTF-AMNLCENAAMA------SEKPVLVFSL-EMPAEQIMMRMLASL--SRVDQTKIRTGQNLDQQ 290 (472)
T ss_pred CcEEEEEeCCCCChHHH-HHHHHHHHHHh------cCCeEEEEec-cCCHHHHHHHHHHhh--CCCCHHHhccCCCCCHH
Confidence 34567789999999984 44444444321 1334566543 344445544433322 12222222222 11222
Q ss_pred HHH-------HHhcCCcEEE-----eCHHHHHHHHhhccccccceeEEEEcccchhcc
Q 003887 341 QFK-------ELKAGCEIVI-----ATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD 386 (789)
Q Consensus 341 ~~~-------~l~~~~dIiV-----~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~ 386 (789)
.+. .+.....+.| .|+..+...+++-......+++||||=.+.|..
T Consensus 291 e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 291 DWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCC
Confidence 222 2323344555 255555544432211123578999998887753
No 417
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=85.56 E-value=0.85 Score=52.61 Aligned_cols=57 Identities=32% Similarity=0.458 Sum_probs=40.6
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEE
Q 003887 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVY 333 (789)
Q Consensus 263 rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~ 333 (789)
.+++++|+||||||..+++|.|... .+ -+||+=|--+|.......+++. +.+|.++-
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~---------~~-s~iV~D~KgEl~~~t~~~r~~~----G~~V~vld 101 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY---------PG-SMIVTDPKGELYEKTAGYRKKR----GYKVYVLD 101 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc---------cC-CEEEEECCCcHHHHHHHHHHHC----CCEEEEee
Confidence 5799999999999999999987432 12 3788889988887665544444 44554443
No 418
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=85.55 E-value=8.6 Score=43.97 Aligned_cols=137 Identities=21% Similarity=0.294 Sum_probs=74.0
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHH----HHHcC--------CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCC
Q 003887 230 CGFSTQLMHAISKQGYEKPTSIQCQALP----IILSG--------RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEE 297 (789)
Q Consensus 230 ~~l~~~l~~~l~~~g~~~ptpiQ~~ai~----~il~g--------rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~ 297 (789)
+|.++.-++.+...|...-.|.=.+.+. .+.+- ..+|+.+|.|||||..+.-.++ ...
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~----------~S~ 563 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIAL----------SSD 563 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHh----------hcC
Confidence 5777777777777665443333333332 22211 3589999999999964322221 134
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEE
Q 003887 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLV 377 (789)
Q Consensus 298 gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lV 377 (789)
-|.+=|+.|..-. |.+....+..+.. .+.+. .-+.+.+||
T Consensus 564 FPFvKiiSpe~mi------------------------G~sEsaKc~~i~k----------~F~DA------YkS~lsiiv 603 (744)
T KOG0741|consen 564 FPFVKIISPEDMI------------------------GLSESAKCAHIKK----------IFEDA------YKSPLSIIV 603 (744)
T ss_pred CCeEEEeChHHcc------------------------CccHHHHHHHHHH----------HHHHh------hcCcceEEE
Confidence 6788888885321 1122222111110 11111 124567899
Q ss_pred EcccchhccCC-----ChHHHHHH----HhhcCC-CceEEEEeccCcHH
Q 003887 378 LDEADRMFDLG-----FEPQIRSI----VGQIRP-DRQTLLFSATMPRK 416 (789)
Q Consensus 378 lDEah~m~~~~-----f~~~i~~i----l~~~~~-~~q~ll~SATl~~~ 416 (789)
||+..++++|. |...+... +...+| .+++++|..|-...
T Consensus 604 vDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~ 652 (744)
T KOG0741|consen 604 VDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRRE 652 (744)
T ss_pred EcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHH
Confidence 99999999975 44444332 333333 45677777765443
No 419
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=85.40 E-value=0.61 Score=52.33 Aligned_cols=55 Identities=24% Similarity=0.286 Sum_probs=38.7
Q ss_pred CEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEE
Q 003887 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAV 332 (789)
Q Consensus 264 dvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~ 332 (789)
+++++|+||+|||..+++|.+... ...+||+=|--++........++. +.+|.++
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~----------~~s~vv~D~Kge~~~~t~~~r~~~----G~~V~v~ 55 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW----------PGSVVVLDPKGENFELTSEHRRAL----GRKVFVF 55 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC----------CCCEEEEccchhHHHHHHHHHHHc----CCeEEEE
Confidence 578999999999999888876532 234788889888886655444432 4455444
No 420
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=85.21 E-value=0.53 Score=55.72 Aligned_cols=11 Identities=27% Similarity=0.362 Sum_probs=6.7
Q ss_pred ccccCCCCCCC
Q 003887 29 RLYVPPSSRYS 39 (789)
Q Consensus 29 ~~~~~~~~~~~ 39 (789)
+.|-++++|-.
T Consensus 1393 r~yEIGR~r~~ 1403 (1516)
T KOG1832|consen 1393 RMYEIGRRRPT 1403 (1516)
T ss_pred hhhhhcccCCC
Confidence 44556766665
No 421
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=85.05 E-value=0.81 Score=48.61 Aligned_cols=26 Identities=50% Similarity=0.892 Sum_probs=12.7
Q ss_pred cCCCCCCCCCCCCCCCCCCCCcccCC
Q 003887 618 RKGGGKKGKGRGGAGRGVRGVDFGLG 643 (789)
Q Consensus 618 r~~g~~~g~g~gggg~g~rg~~~g~g 643 (789)
+.+|+..|+|++|||++++|.+.|+|
T Consensus 429 rdggg~~gggr~gggr~gggrgrggg 454 (465)
T KOG3973|consen 429 RDGGGRDGGGRDGGGRDGGGRGRGGG 454 (465)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 33444455555555555544433333
No 422
>PRK10865 protein disaggregation chaperone; Provisional
Probab=85.00 E-value=8.9 Score=47.73 Aligned_cols=16 Identities=38% Similarity=0.499 Sum_probs=14.4
Q ss_pred CCEEEEccCCChhhHH
Q 003887 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvl~~a~TGsGKTla 278 (789)
.++|+.+++|+|||..
T Consensus 200 ~n~lL~G~pGvGKT~l 215 (857)
T PRK10865 200 NNPVLIGEPGVGKTAI 215 (857)
T ss_pred CceEEECCCCCCHHHH
Confidence 4899999999999975
No 423
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=84.96 E-value=3.6 Score=45.20 Aligned_cols=41 Identities=10% Similarity=0.053 Sum_probs=26.3
Q ss_pred ccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEec
Q 003887 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSA 411 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SA 411 (789)
....+++|||+||+|-.. -.+.+.+.++.-++..-+|++|.
T Consensus 106 ~g~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t~ 146 (334)
T PRK07993 106 LGGAKVVWLPDAALLTDA-AANALLKTLEEPPENTWFFLACR 146 (334)
T ss_pred cCCceEEEEcchHhhCHH-HHHHHHHHhcCCCCCeEEEEEEC
Confidence 457899999999998643 24456666666444444444443
No 424
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=84.84 E-value=4.6 Score=42.11 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=16.7
Q ss_pred HHcCC-CEEEEccCCChhhHHHH
Q 003887 259 ILSGR-DIIGIAKTGSGKTAAFV 280 (789)
Q Consensus 259 il~gr-dvl~~a~TGsGKTla~l 280 (789)
+..++ -+.++++.|||||...-
T Consensus 47 i~d~qg~~~vtGevGsGKTv~~R 69 (269)
T COG3267 47 IADGQGILAVTGEVGSGKTVLRR 69 (269)
T ss_pred HhcCCceEEEEecCCCchhHHHH
Confidence 44445 57789999999998744
No 425
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=84.84 E-value=0.76 Score=47.75 Aligned_cols=44 Identities=32% Similarity=0.415 Sum_probs=29.7
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCC-CEEEEccCCChhhHHHHHHHHHH
Q 003887 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGR-DIIGIAKTGSGKTAAFVLPMIVH 286 (789)
Q Consensus 223 pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~gr-dvl~~a~TGsGKTla~llp~l~~ 286 (789)
.+.+|++++||+.+.+.. +..| =+|++++|||||+.. +..|+.|
T Consensus 106 ~IPt~eeL~LPevlk~la-------------------~~kRGLviiVGaTGSGKSTt-mAaMi~y 150 (375)
T COG5008 106 KIPTFEELKLPEVLKDLA-------------------LAKRGLVIIVGATGSGKSTT-MAAMIGY 150 (375)
T ss_pred cCCcHHhcCCcHHHHHhh-------------------cccCceEEEECCCCCCchhh-HHHHhcc
Confidence 456788888887765521 2222 267889999999986 5556555
No 426
>PRK04328 hypothetical protein; Provisional
Probab=84.77 E-value=4.5 Score=42.47 Aligned_cols=51 Identities=20% Similarity=0.191 Sum_probs=31.6
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~ 321 (789)
|.-+++.+++|+|||+..+--+...+ . .+-.+|++. +.+-..++.+.+..+
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~-~-------~ge~~lyis-~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGL-Q-------MGEPGVYVA-LEEHPVQVRRNMRQF 73 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-h-------cCCcEEEEE-eeCCHHHHHHHHHHc
Confidence 46688899999999975433333333 2 244466665 555555666666655
No 427
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=84.73 E-value=4.4 Score=48.01 Aligned_cols=72 Identities=21% Similarity=0.381 Sum_probs=51.9
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHH---HHhc-CCcEEEeCHHHHHHHHhhccccccc
Q 003887 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELKA-GCEIVIATPGRLIDMLKMKALTMSR 372 (789)
Q Consensus 297 ~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~---~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~ 372 (789)
.+.++||.|+|+..|.++++.+.+. ++.+..++|+.+..+... .+.. ..+||||| +++. ..+++..
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaT-----dv~a-rGIDip~ 325 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT-----DVAA-RGLHIDG 325 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----hhhh-cCCCccC
Confidence 3567999999999999988877664 789999999987655433 3333 47999999 3443 3445667
Q ss_pred eeEEEE
Q 003887 373 VTYLVL 378 (789)
Q Consensus 373 i~~lVl 378 (789)
+++||.
T Consensus 326 V~~VIn 331 (572)
T PRK04537 326 VKYVYN 331 (572)
T ss_pred CCEEEE
Confidence 777664
No 428
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=84.73 E-value=1.6 Score=47.22 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=14.1
Q ss_pred CCEEEEccCCChhhHH
Q 003887 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvl~~a~TGsGKTla 278 (789)
.++++.+|.|+|||..
T Consensus 31 ~~~ll~Gp~G~GKT~l 46 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTL 46 (305)
T ss_pred CeEEEECCCCCCHHHH
Confidence 4699999999999975
No 429
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=84.70 E-value=3.5 Score=46.30 Aligned_cols=79 Identities=18% Similarity=0.220 Sum_probs=44.2
Q ss_pred ceeEEEEcccchhccCC----C--------hHHHHHHHhhcCCCceEEEEecc-CcHHHHHHHHHHhCCCeEEeeccccC
Q 003887 372 RVTYLVLDEADRMFDLG----F--------EPQIRSIVGQIRPDRQTLLFSAT-MPRKVEKLAREILSDPVRVTVGEVGM 438 (789)
Q Consensus 372 ~i~~lVlDEah~m~~~~----f--------~~~i~~il~~~~~~~q~ll~SAT-l~~~v~~l~~~~l~~p~~i~i~~~~~ 438 (789)
...+|+|||+|.++... . +-.+..+.....++-++++++|| .|..+.+-++..+...+
T Consensus 245 qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~--------- 315 (428)
T KOG0740|consen 245 QPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFVKRL--------- 315 (428)
T ss_pred CCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhhcee---------
Confidence 56778899999886422 0 11112222223455689999999 67666665555433222
Q ss_pred ccccceEEEEecCCCcchHHHHHHhcCCC
Q 003887 439 ANEDITQVVHVIPSDAEKLPWLLEKLPGM 467 (789)
Q Consensus 439 ~~~~i~q~~~~~~~~~~k~~~L~~~L~~~ 467 (789)
+...++...+...+..+|.+.
T Consensus 316 --------yiplPd~etr~~~~~~ll~~~ 336 (428)
T KOG0740|consen 316 --------YIPLPDYETRSLLWKQLLKEQ 336 (428)
T ss_pred --------eecCCCHHHHHHHHHHHHHhC
Confidence 223344455666666666543
No 430
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=84.54 E-value=3.3 Score=46.67 Aligned_cols=54 Identities=20% Similarity=0.232 Sum_probs=32.1
Q ss_pred CCCCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHH
Q 003887 222 RPVKTFEDCGFSTQLMHAISKQ---GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~---g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla 278 (789)
.|-.+|.+++--+...+.|... .+..|.-++...+ ...+.+++.+|+|+|||+.
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl---~~pkgvLL~GppGTGKT~L 195 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGI---DPPRGVLLYGPPGTGKTML 195 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCC---CCCceEEEECCCCCCHHHH
Confidence 3456788887665555555432 2222222222221 2347899999999999975
No 431
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=84.52 E-value=2.8 Score=45.71 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=27.1
Q ss_pred ccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEecc
Q 003887 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT 412 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT 412 (789)
...++++|||+||+|... -.+.+.+.++.-+++..+|+.|..
T Consensus 106 ~~~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 106 LNGYRLFVIEPADAMNES-ASNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred cCCceEEEecchhhhCHH-HHHHHHHHhcCCCCCeEEEEEECC
Confidence 456899999999998643 244566666664545545554443
No 432
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=84.45 E-value=5.2 Score=40.09 Aligned_cols=71 Identities=20% Similarity=0.301 Sum_probs=51.2
Q ss_pred CCcEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeeh-----hhhc-cCCCCCc
Q 003887 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-----VAAR-GLDIKSI 539 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-----v~~~-GlDI~~v 539 (789)
..++||.|++...+...+..+... ++.+..++|+.+..+....+. +...|+|+|. .+.. -+++.++
T Consensus 69 ~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~l 144 (203)
T cd00268 69 GPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSKV 144 (203)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhhC
Confidence 457999999999888877766554 678889999998766544332 5678999994 2222 3567778
Q ss_pred cEEEE
Q 003887 540 KSVVN 544 (789)
Q Consensus 540 ~~VI~ 544 (789)
.+||.
T Consensus 145 ~~lIv 149 (203)
T cd00268 145 KYLVL 149 (203)
T ss_pred CEEEE
Confidence 77774
No 433
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=84.29 E-value=5 Score=42.39 Aligned_cols=37 Identities=14% Similarity=0.038 Sum_probs=23.6
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEc
Q 003887 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~ 305 (789)
.|.-+++.+++|+|||+.. +-++.+... .+.+++++.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~-~qf~~~~a~-------~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMV-EQFAVTQAS-------RGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHH-HHHHHHHHh-------CCCcEEEEE
Confidence 3456889999999999853 333333322 244577766
No 434
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=84.25 E-value=2.7 Score=50.39 Aligned_cols=71 Identities=18% Similarity=0.318 Sum_probs=52.5
Q ss_pred CCcEEEEecccccHHHHHHHHHHc-----CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeeh-----hhhc-cCCCCC
Q 003887 470 DGDVLVFASKKTTVDEIESQLAQK-----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-----VAAR-GLDIKS 538 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-----v~~~-GlDI~~ 538 (789)
..++||.|++++-|..+++.|... ++.+..+||+.+...+...+ + ....|||+|. .+.+ .+++.+
T Consensus 74 ~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l---~-~~~~IVVgTPgrl~d~l~r~~l~l~~ 149 (629)
T PRK11634 74 APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL---R-QGPQIVVGTPGRLLDHLKRGTLDLSK 149 (629)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcchhh
Confidence 457999999999999888877643 68899999998866544433 2 3578999993 3333 478888
Q ss_pred ccEEEE
Q 003887 539 IKSVVN 544 (789)
Q Consensus 539 v~~VI~ 544 (789)
+.+||.
T Consensus 150 l~~lVl 155 (629)
T PRK11634 150 LSGLVL 155 (629)
T ss_pred ceEEEe
Confidence 888774
No 435
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=84.19 E-value=2.8 Score=51.26 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=16.6
Q ss_pred CCEEEEccCCChhhHHHHHHHHHH
Q 003887 263 RDIIGIAKTGSGKTAAFVLPMIVH 286 (789)
Q Consensus 263 rdvl~~a~TGsGKTla~llp~l~~ 286 (789)
+.+|+.+|+|+|||+. .-++..
T Consensus 488 ~giLL~GppGtGKT~l--akalA~ 509 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLL--AKAVAT 509 (733)
T ss_pred ceEEEECCCCCCHHHH--HHHHHH
Confidence 5689999999999964 334444
No 436
>CHL00095 clpC Clp protease ATP binding subunit
Probab=84.11 E-value=5.8 Score=49.19 Aligned_cols=17 Identities=41% Similarity=0.442 Sum_probs=15.1
Q ss_pred CCEEEEccCCChhhHHH
Q 003887 263 RDIIGIAKTGSGKTAAF 279 (789)
Q Consensus 263 rdvl~~a~TGsGKTla~ 279 (789)
.++|+.+++|+|||...
T Consensus 201 ~n~lL~G~pGvGKTal~ 217 (821)
T CHL00095 201 NNPILIGEPGVGKTAIA 217 (821)
T ss_pred CCeEEECCCCCCHHHHH
Confidence 58999999999999763
No 437
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=84.06 E-value=2.8 Score=46.33 Aligned_cols=42 Identities=24% Similarity=0.177 Sum_probs=26.2
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHH
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTREL 310 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreL 310 (789)
+..++++++||||||.. +-.++.++... ...+++.+--..|+
T Consensus 122 ~g~ili~G~tGSGKTT~-l~al~~~i~~~------~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTT-LASMIDYINKN------AAGHIITIEDPIEY 163 (343)
T ss_pred CcEEEEECCCCCCHHHH-HHHHHHhhCcC------CCCEEEEEcCChhh
Confidence 45789999999999985 44455554321 13345555554454
No 438
>COG1485 Predicted ATPase [General function prediction only]
Probab=84.05 E-value=17 Score=39.70 Aligned_cols=116 Identities=13% Similarity=0.135 Sum_probs=67.4
Q ss_pred HHHHHHcC-----CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEE
Q 003887 255 ALPIILSG-----RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRV 329 (789)
Q Consensus 255 ai~~il~g-----rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v 329 (789)
++.|++.. +.+-+.++.|.|||. |+-++-+.+... + -.-++....+..+++++..+.
T Consensus 53 ~l~~lf~r~~~~~~GlYl~GgVGrGKT~--LMD~Fy~~lp~~---~------k~R~HFh~FM~~vH~~l~~l~------- 114 (367)
T COG1485 53 ALGWLFGRDHGPVRGLYLWGGVGRGKTM--LMDLFYESLPGE---R------KRRLHFHRFMARVHQRLHTLQ------- 114 (367)
T ss_pred ccccccccCCCCCceEEEECCCCccHHH--HHHHHHhhCCcc---c------cccccHHHHHHHHHHHHHHHc-------
Confidence 45555544 568889999999994 555555443221 1 134678888888888888874
Q ss_pred EEEEcCCC-hHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhh-cCCCceEE
Q 003887 330 SAVYGGMS-KLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQ-IRPDRQTL 407 (789)
Q Consensus 330 ~~~~gg~~-~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~-~~~~~q~l 407 (789)
|... ...... . ...+..+|+|||.|- .|.+=.-.+..+++. +.....++
T Consensus 115 ----g~~dpl~~iA~-----------------~-------~~~~~~vLCfDEF~V-tDI~DAMiL~rL~~~Lf~~GV~lv 165 (367)
T COG1485 115 ----GQTDPLPPIAD-----------------E-------LAAETRVLCFDEFEV-TDIADAMILGRLLEALFARGVVLV 165 (367)
T ss_pred ----CCCCccHHHHH-----------------H-------HHhcCCEEEeeeeee-cChHHHHHHHHHHHHHHHCCcEEE
Confidence 1111 111111 1 134567899999983 121111122333333 34578888
Q ss_pred EEeccCcHHH
Q 003887 408 LFSATMPRKV 417 (789)
Q Consensus 408 l~SATl~~~v 417 (789)
..|-|.|.++
T Consensus 166 aTSN~~P~~L 175 (367)
T COG1485 166 ATSNTAPDNL 175 (367)
T ss_pred EeCCCChHHh
Confidence 8899988664
No 439
>PRK06620 hypothetical protein; Validated
Probab=84.00 E-value=4.9 Score=41.19 Aligned_cols=105 Identities=14% Similarity=0.124 Sum_probs=57.9
Q ss_pred EEEEcCcHHHHHHHHHHHHH-HhhhcC-cEEEEEEcCC--ChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEE
Q 003887 301 GVICAPTRELAHQIYLETKK-FAKSHG-IRVSAVYGGM--SKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYL 376 (789)
Q Consensus 301 vLIl~PTreLa~Qi~~~~~k-~~~~~~-i~v~~~~gg~--~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~l 376 (789)
-+|+.+.-.+|.++...+.+ +. ... .+..+++|.. .+......+.......+.+...... ..+...++|
T Consensus 17 ~Fvvg~~N~~a~~~~~~~~~~~~-~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~------~~~~~~d~l 89 (214)
T PRK06620 17 EFIVSSSNDQAYNIIKNWQCGFG-VNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNE------EILEKYNAF 89 (214)
T ss_pred hhEecccHHHHHHHHHHHHHccc-cCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhch------hHHhcCCEE
Confidence 47888977777776555543 21 011 1557888854 4555555555444545544332211 113456789
Q ss_pred EEcccchhccCCChHHHHHHHhhcCCC-ceEEEEeccCcHH
Q 003887 377 VLDEADRMFDLGFEPQIRSIVGQIRPD-RQTLLFSATMPRK 416 (789)
Q Consensus 377 VlDEah~m~~~~f~~~i~~il~~~~~~-~q~ll~SATl~~~ 416 (789)
+|||+|.+.+ ..+..+++.+... .++|+.|.|.|+.
T Consensus 90 liDdi~~~~~----~~lf~l~N~~~e~g~~ilits~~~p~~ 126 (214)
T PRK06620 90 IIEDIENWQE----PALLHIFNIINEKQKYLLLTSSDKSRN 126 (214)
T ss_pred EEeccccchH----HHHHHHHHHHHhcCCEEEEEcCCCccc
Confidence 9999996422 3455666666544 4444444445543
No 440
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=83.79 E-value=1.9 Score=51.85 Aligned_cols=43 Identities=9% Similarity=0.101 Sum_probs=23.9
Q ss_pred ccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEeccCc
Q 003887 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~ 414 (789)
.....++||||||.|.... ...+.+.+...+... ++++.+|-+
T Consensus 116 ~g~~KV~IIDEa~~LT~~A-~NALLKtLEEPP~~t-ifILaTte~ 158 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSKSA-FNALLKTLEEPPKHV-IFILATTEV 158 (725)
T ss_pred cCCCEEEEEEChhhCCHHH-HHHHHHHhhcCCCce-EEEEEcCCh
Confidence 4578899999999875432 223344444433333 334444433
No 441
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=83.66 E-value=5.6 Score=43.37 Aligned_cols=56 Identities=11% Similarity=0.173 Sum_probs=32.6
Q ss_pred EeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEec
Q 003887 353 IATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSA 411 (789)
Q Consensus 353 V~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SA 411 (789)
|-....+...+..... ....+++|||+||.|-.. -.+.+.+++...+ ...+|+++.
T Consensus 106 id~ir~i~~~l~~~p~-~~~~kVvII~~ae~m~~~-aaNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 106 LEQIREIKRFLSRPPL-EAPRKVVVIEDAETMNEA-AANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred HHHHHHHHHHHccCcc-cCCceEEEEEchhhcCHH-HHHHHHHHHhCCC-CCeEEEEEC
Confidence 3333344444443332 357899999999997543 2345666666655 554555444
No 442
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=83.60 E-value=1.8 Score=49.35 Aligned_cols=40 Identities=25% Similarity=0.344 Sum_probs=30.8
Q ss_pred cHHHHHHHHHHHcCCC--EEEEccCCChhhHHHHHHHHHHHhc
Q 003887 249 TSIQCQALPIILSGRD--IIGIAKTGSGKTAAFVLPMIVHIMD 289 (789)
Q Consensus 249 tpiQ~~ai~~il~grd--vl~~a~TGsGKTla~llp~l~~l~~ 289 (789)
.+.|.+.+..+++... +|+.+|||||||.. +..+|..+..
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 6888888888776643 56789999999986 6777777654
No 443
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=83.54 E-value=2.8 Score=41.86 Aligned_cols=32 Identities=28% Similarity=0.340 Sum_probs=25.0
Q ss_pred CCcHHHHHHHHHHH-cCCCEEEEccCCChhhHH
Q 003887 247 KPTSIQCQALPIIL-SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 247 ~ptpiQ~~ai~~il-~grdvl~~a~TGsGKTla 278 (789)
..++-|.+.+...+ .+..++++++||||||..
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 35566777776655 568899999999999975
No 444
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=83.36 E-value=6.3 Score=39.23 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=18.0
Q ss_pred CEEEEccCCChhhHHHHHHHHHHHhc
Q 003887 264 DIIGIAKTGSGKTAAFVLPMIVHIMD 289 (789)
Q Consensus 264 dvl~~a~TGsGKTla~llp~l~~l~~ 289 (789)
.+|+.++.|.|||.. +..+...++.
T Consensus 16 ~~L~~G~~G~gkt~~-a~~~~~~l~~ 40 (188)
T TIGR00678 16 AYLFAGPEGVGKELL-ALALAKALLC 40 (188)
T ss_pred EEEEECCCCCCHHHH-HHHHHHHHcC
Confidence 478999999999975 4444555543
No 445
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=82.94 E-value=12 Score=46.48 Aligned_cols=16 Identities=38% Similarity=0.451 Sum_probs=14.5
Q ss_pred CCEEEEccCCChhhHH
Q 003887 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvl~~a~TGsGKTla 278 (789)
.++|+.++.|+|||..
T Consensus 209 ~n~lLvG~pGvGKTal 224 (852)
T TIGR03345 209 NNPILTGEAGVGKTAV 224 (852)
T ss_pred CceeEECCCCCCHHHH
Confidence 4899999999999975
No 446
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=82.83 E-value=9.6 Score=43.51 Aligned_cols=112 Identities=18% Similarity=0.113 Sum_probs=55.1
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHH
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~ 341 (789)
|.=+++.|++|+|||.. ++-++.++... .+..++++.. -.-..|+...+..... ++....+..|.-....
T Consensus 195 G~l~vi~g~pg~GKT~~-~l~~a~~~a~~------~g~~vl~~Sl-Em~~~~i~~R~~~~~~--~v~~~~~~~g~l~~~~ 264 (434)
T TIGR00665 195 SDLIILAARPSMGKTAF-ALNIAENAAIK------EGKPVAFFSL-EMSAEQLAMRMLSSES--RVDSQKLRTGKLSDED 264 (434)
T ss_pred CeEEEEEeCCCCChHHH-HHHHHHHHHHh------CCCeEEEEeC-cCCHHHHHHHHHHHhc--CCCHHHhccCCCCHHH
Confidence 44578899999999974 55555554321 2344666543 2334444444333221 2222222222212222
Q ss_pred H-------HHHhcCCcEEEe-----CHHHHHHHHhhccccccceeEEEEcccchhc
Q 003887 342 F-------KELKAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (789)
Q Consensus 342 ~-------~~l~~~~dIiV~-----Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~ 385 (789)
+ ..+. ...+.|. |+..+...+..-... ..+++||||=.+.|.
T Consensus 265 ~~~~~~a~~~l~-~~~l~i~d~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 265 WEKLTSAAGKLS-EAPLYIDDTPGLTITELRAKARRLKRE-HGLGLIVIDYLQLMS 318 (434)
T ss_pred HHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcC
Confidence 2 2222 2345542 445555444322211 247899999998774
No 447
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=82.79 E-value=3.6 Score=47.96 Aligned_cols=40 Identities=13% Similarity=0.157 Sum_probs=26.5
Q ss_pred ccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEe
Q 003887 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~S 410 (789)
...+.++||||||+|.... ...+.+.+...++...+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 4678999999999976432 234556666655556555554
No 448
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=82.77 E-value=2.1 Score=47.83 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=16.3
Q ss_pred cCCCEEEEccCCChhhHH
Q 003887 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla 278 (789)
.|+.+++++++|+|||..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred CCCEEEEECCCCCChhHH
Confidence 678899999999999975
No 449
>PRK08506 replicative DNA helicase; Provisional
Probab=82.67 E-value=8 Score=44.67 Aligned_cols=112 Identities=20% Similarity=0.172 Sum_probs=55.3
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHH
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~ 341 (789)
|.=+++.|.+|+|||.. ++-++.++..+ +..++++.. -.-+.|+...+.... .++....+..+.-....
T Consensus 192 G~LivIaarpg~GKT~f-al~ia~~~~~~-------g~~V~~fSl-EMs~~ql~~Rlla~~--s~v~~~~i~~~~l~~~e 260 (472)
T PRK08506 192 GDLIIIAARPSMGKTTL-CLNMALKALNQ-------DKGVAFFSL-EMPAEQLMLRMLSAK--TSIPLQNLRTGDLDDDE 260 (472)
T ss_pred CceEEEEcCCCCChHHH-HHHHHHHHHhc-------CCcEEEEeC-cCCHHHHHHHHHHHh--cCCCHHHHhcCCCCHHH
Confidence 34577889999999974 55555554322 344666533 234445544433221 12222112112212222
Q ss_pred HH-------HHhcCCcEEEe-----CHHHHHHHHhhccccccceeEEEEcccchhc
Q 003887 342 FK-------ELKAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (789)
Q Consensus 342 ~~-------~l~~~~dIiV~-----Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~ 385 (789)
+. .+. ...+.|. |+..+...+++-......+++||||=.+.|.
T Consensus 261 ~~~~~~a~~~l~-~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 261 WERLSDACDELS-KKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHHHHHHHH-cCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 22 222 2345553 4555554443321112357899999999775
No 450
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=82.66 E-value=6.8 Score=41.67 Aligned_cols=16 Identities=25% Similarity=0.274 Sum_probs=14.3
Q ss_pred CCEEEEccCCChhhHH
Q 003887 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvl~~a~TGsGKTla 278 (789)
+++++.+++|+|||+.
T Consensus 112 ~~~~i~g~~g~GKttl 127 (270)
T TIGR02858 112 LNTLIISPPQCGKTTL 127 (270)
T ss_pred eEEEEEcCCCCCHHHH
Confidence 5889999999999974
No 451
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=82.65 E-value=1.4 Score=45.00 Aligned_cols=55 Identities=20% Similarity=0.347 Sum_probs=28.5
Q ss_pred CHHHHHHHHhhccccccceeEEEEcccchhc-cC----CChHHHHHHHhhcC-CCceEEEEeccC
Q 003887 355 TPGRLIDMLKMKALTMSRVTYLVLDEADRMF-DL----GFEPQIRSIVGQIR-PDRQTLLFSATM 413 (789)
Q Consensus 355 Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~-~~----~f~~~i~~il~~~~-~~~q~ll~SATl 413 (789)
+...++..+...... -+|||||+|.+. .. .+...+..++.... .....++++++-
T Consensus 105 ~l~~~~~~l~~~~~~----~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 105 ALERLLEKLKKKGKK----VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp -HHHHHHHHHHCHCC----EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred HHHHHHHHHHhcCCc----EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 344455555433221 689999999988 22 23344555555422 233445566664
No 452
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=82.61 E-value=1.3 Score=52.43 Aligned_cols=57 Identities=25% Similarity=0.167 Sum_probs=43.0
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEE
Q 003887 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVY 333 (789)
Q Consensus 263 rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~ 333 (789)
++++++|+||||||..+++|.|... +.-+||+=|--|+........++. |.+|.++-
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~----------~~S~VV~DpKGEl~~~Ta~~R~~~----G~~V~vfd 215 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW----------EDSVVVHDIKLENYELTSGWREKQ----GQKVFVWE 215 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC----------CCCEEEEeCcHHHHHHHHHHHHHC----CCeEEEEe
Confidence 5799999999999999999988763 223788999999987666555443 55665553
No 453
>PRK05748 replicative DNA helicase; Provisional
Probab=82.55 E-value=6.6 Score=45.07 Aligned_cols=114 Identities=16% Similarity=0.108 Sum_probs=55.5
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHH
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~ 341 (789)
|.-+++.|.+|+|||.. .+-++.++... .+..++++. ...-..|+...+.... .++....+..+.-....
T Consensus 203 G~livIaarpg~GKT~~-al~ia~~~a~~------~g~~v~~fS-lEms~~~l~~R~l~~~--~~v~~~~i~~~~l~~~e 272 (448)
T PRK05748 203 NDLIIVAARPSVGKTAF-ALNIAQNVATK------TDKNVAIFS-LEMGAESLVMRMLCAE--GNIDAQRLRTGQLTDDD 272 (448)
T ss_pred CceEEEEeCCCCCchHH-HHHHHHHHHHh------CCCeEEEEe-CCCCHHHHHHHHHHHh--cCCCHHHhhcCCCCHHH
Confidence 34578899999999974 55555554321 133456553 2334445544432211 12222212222222222
Q ss_pred HHHH------hcCCcEEEe-----CHHHHHHHHhhccccccceeEEEEcccchhc
Q 003887 342 FKEL------KAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (789)
Q Consensus 342 ~~~l------~~~~dIiV~-----Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~ 385 (789)
+..+ .....+.|. |+..+...+++-......+++||||=.+.|.
T Consensus 273 ~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 273 WPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 2221 123445553 4455554443221111257899999999874
No 454
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=82.47 E-value=5.5 Score=48.78 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=15.4
Q ss_pred cCCCEEEEccCCChhhHH
Q 003887 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla 278 (789)
.++.+++.+|+|+|||+.
T Consensus 211 ~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCceEEEECCCCCChHHH
Confidence 347899999999999964
No 455
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=82.37 E-value=4.6 Score=48.11 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=62.4
Q ss_pred EEecCCCcchHHH-HHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEE
Q 003887 447 VHVIPSDAEKLPW-LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLI 525 (789)
Q Consensus 447 ~~~~~~~~~k~~~-L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLV 525 (789)
+...+....|... ++..+ ...+.+||.+|++.-+......|...++.+..+|+.++..++..++.....|.++||+
T Consensus 32 lv~~PTG~GKTl~y~lpal---~~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~ 108 (591)
T TIGR01389 32 LVVMPTGGGKSLCYQVPAL---LLKGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLY 108 (591)
T ss_pred EEEcCCCccHhHHHHHHHH---HcCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEE
Confidence 3445555555432 22222 2357899999999998888889999999999999999999999999999999999999
Q ss_pred eeh
Q 003887 526 ATD 528 (789)
Q Consensus 526 aT~ 528 (789)
.|.
T Consensus 109 ~tp 111 (591)
T TIGR01389 109 VAP 111 (591)
T ss_pred ECh
Confidence 883
No 456
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=82.31 E-value=3.4 Score=51.49 Aligned_cols=92 Identities=13% Similarity=0.205 Sum_probs=71.8
Q ss_pred CcchHHHHHHh-cCCCCCCCcEEEEecccccHHHHHHHHHH----cCCceeeccCCCCHHHHHHHHHHhhcCCccEEEee
Q 003887 453 DAEKLPWLLEK-LPGMIDDGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT 527 (789)
Q Consensus 453 ~~~k~~~L~~~-L~~~~~~~kvLVF~~s~~~a~~l~~~L~~----~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT 527 (789)
...|-+.-+.. ......+.+|.|.|||.--|+.=++.|++ ..+++..|.--.+..+...+++..++|+++|+|.|
T Consensus 625 GFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT 704 (1139)
T COG1197 625 GFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT 704 (1139)
T ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEec
Confidence 45565544333 33334556899999997766665555544 47788999999999999999999999999999999
Q ss_pred -hhhhccCCCCCccEEEE
Q 003887 528 -DVAARGLDIKSIKSVVN 544 (789)
Q Consensus 528 -~v~~~GlDI~~v~~VI~ 544 (789)
.+++..+-+.++-+||.
T Consensus 705 HrLL~kdv~FkdLGLlII 722 (1139)
T COG1197 705 HRLLSKDVKFKDLGLLII 722 (1139)
T ss_pred hHhhCCCcEEecCCeEEE
Confidence 67788999999999885
No 457
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=82.06 E-value=7.6 Score=45.20 Aligned_cols=16 Identities=25% Similarity=0.530 Sum_probs=14.4
Q ss_pred CCEEEEccCCChhhHH
Q 003887 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvl~~a~TGsGKTla 278 (789)
+.+|+.+|+|+|||+.
T Consensus 89 ~giLL~GppGtGKT~l 104 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLL 104 (495)
T ss_pred CcEEEECCCCCCHHHH
Confidence 5799999999999974
No 458
>PRK10436 hypothetical protein; Provisional
Probab=81.89 E-value=2.1 Score=49.08 Aligned_cols=36 Identities=25% Similarity=0.270 Sum_probs=23.6
Q ss_pred HHHHHHHHHHc--CCCEEEEccCCChhhHHHHHHHHHHH
Q 003887 251 IQCQALPIILS--GRDIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 251 iQ~~ai~~il~--grdvl~~a~TGsGKTla~llp~l~~l 287 (789)
.|.+.+..++. +--+|++++||||||.. +..+|.++
T Consensus 205 ~~~~~l~~~~~~~~GliLvtGpTGSGKTTt-L~a~l~~~ 242 (462)
T PRK10436 205 AQLAQFRQALQQPQGLILVTGPTGSGKTVT-LYSALQTL 242 (462)
T ss_pred HHHHHHHHHHHhcCCeEEEECCCCCChHHH-HHHHHHhh
Confidence 34444444443 33578899999999986 45666665
No 459
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=81.73 E-value=3.6 Score=43.69 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHc-C-CCEEEEccCCChhhHHHHHHHHHHH
Q 003887 250 SIQCQALPIILS-G-RDIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 250 piQ~~ai~~il~-g-rdvl~~a~TGsGKTla~llp~l~~l 287 (789)
+.|.+.|..++. . ..++++++||||||.. +..++.++
T Consensus 66 ~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i 104 (264)
T cd01129 66 PENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSEL 104 (264)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhh
Confidence 335555544443 3 3578999999999985 45555665
No 460
>PRK08006 replicative DNA helicase; Provisional
Probab=81.73 E-value=14 Score=42.58 Aligned_cols=114 Identities=14% Similarity=0.100 Sum_probs=54.6
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHH
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~ 341 (789)
|.=+|+.|.+|+|||.. ++-+..++... .+..++|+.. -.-..|+...+.... .++....+..+.-..+.
T Consensus 224 G~LiiIaarPgmGKTaf-alnia~~~a~~------~g~~V~~fSl-EM~~~ql~~Rlla~~--~~v~~~~i~~~~l~~~e 293 (471)
T PRK08006 224 SDLIIVAARPSMGKTTF-AMNLCENAAML------QDKPVLIFSL-EMPGEQIMMRMLASL--SRVDQTRIRTGQLDDED 293 (471)
T ss_pred CcEEEEEeCCCCCHHHH-HHHHHHHHHHh------cCCeEEEEec-cCCHHHHHHHHHHHh--cCCCHHHhhcCCCCHHH
Confidence 34467789999999974 44444444211 1344566533 233334443333221 12222222222222222
Q ss_pred HHH-------HhcCCcEEEe-----CHHHHHHHHhhccccccceeEEEEcccchhc
Q 003887 342 FKE-------LKAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (789)
Q Consensus 342 ~~~-------l~~~~dIiV~-----Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~ 385 (789)
+.. +.....+.|. |+..+...+++-......+++||||=.|.|.
T Consensus 294 ~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 294 WARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 222 2233455553 4555544443221112257899999999764
No 461
>PRK05636 replicative DNA helicase; Provisional
Probab=81.71 E-value=11 Score=43.91 Aligned_cols=109 Identities=21% Similarity=0.241 Sum_probs=50.9
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEE---cCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChH
Q 003887 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC---APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (789)
Q Consensus 263 rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl---~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~ 339 (789)
.=+++.|.+|+|||... +-++.++... .+..++|+ .+..+|+..+. . ...++....+..|.-..
T Consensus 266 ~Liiiaarpg~GKT~~a-l~~a~~~a~~------~g~~v~~fSlEMs~~ql~~R~l----s--~~s~v~~~~i~~g~l~~ 332 (505)
T PRK05636 266 QMIIVAARPGVGKSTLA-LDFMRSASIK------HNKASVIFSLEMSKSEIVMRLL----S--AEAEVRLSDMRGGKMDE 332 (505)
T ss_pred ceEEEEeCCCCCHHHHH-HHHHHHHHHh------CCCeEEEEEeeCCHHHHHHHHH----H--HhcCCCHHHHhcCCCCH
Confidence 34577899999999753 3444443211 13345665 33344443331 1 11122222222332222
Q ss_pred HHHHHH------hcCCcEEEe-----CHHHHHHHHhhccccccceeEEEEcccchhc
Q 003887 340 DQFKEL------KAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (789)
Q Consensus 340 ~~~~~l------~~~~dIiV~-----Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~ 385 (789)
+.+..+ .....|.|. |...+...+++-.. -..+++||||=.|.|.
T Consensus 333 ~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~-~~~~~lvvIDYLql~~ 388 (505)
T PRK05636 333 DAWEKLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLKQ-KHDLKLIVVDYLQLMS 388 (505)
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcC
Confidence 222222 123445553 33334333322111 1357899999999875
No 462
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=81.69 E-value=8.7 Score=39.40 Aligned_cols=51 Identities=22% Similarity=0.246 Sum_probs=31.6
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~ 321 (789)
|.-+++.+++|+|||...+ -++...+. .+..++++.-. +-..|+.+.+..+
T Consensus 16 g~~~li~G~~G~GKt~~~~-~~~~~~~~-------~g~~~~y~s~e-~~~~~l~~~~~~~ 66 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSL-QFLYQGLK-------NGEKAMYISLE-EREERILGYAKSK 66 (224)
T ss_pred CeEEEEECCCCCCHHHHHH-HHHHHHHh-------CCCeEEEEECC-CCHHHHHHHHHHc
Confidence 4567889999999997533 33333222 24556776543 4566776666655
No 463
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=81.57 E-value=5.8 Score=46.80 Aligned_cols=42 Identities=14% Similarity=0.176 Sum_probs=23.8
Q ss_pred ccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEeccC
Q 003887 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl 413 (789)
.....++||||+|.|.... ...+.+.+...+ ..-+++|.+|-
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a-~naLLK~LEepp-~~~vfI~~tte 158 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSA-FNALLKTIEEPP-PYIVFIFATTE 158 (563)
T ss_pred cCCCEEEEEEChhhcCHHH-HHHHHHhhccCC-CCEEEEEecCC
Confidence 4578899999999875432 223334444433 33344454453
No 464
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=81.56 E-value=3 Score=50.30 Aligned_cols=71 Identities=18% Similarity=0.109 Sum_probs=54.5
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhh
Q 003887 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (789)
Q Consensus 247 ~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~ 323 (789)
.+++-|.+++... ...++|.|..|||||.+ +..-+.|+........ ..+|.|+=|+-.|.++.+.+.+++.
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~v-lt~Ria~li~~~~v~p---~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRV-LTERIAYLIAAGGVDP---EQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhh-HHHHHHHHHHcCCcCh---HHeeeeechHHHHHHHHHHHHHHhC
Confidence 5789999998776 55789999999999997 4455566655432222 2388899999999999999998875
No 465
>PRK07413 hypothetical protein; Validated
Probab=81.55 E-value=14 Score=41.08 Aligned_cols=54 Identities=17% Similarity=0.274 Sum_probs=40.7
Q ss_pred ccceeEEEEcccchhccCCCh--HHHHHHHhhcCCCceEEEEeccCcHHHHHHHHH
Q 003887 370 MSRVTYLVLDEADRMFDLGFE--PQIRSIVGQIRPDRQTLLFSATMPRKVEKLARE 423 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~f~--~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~ 423 (789)
-..+++|||||+-..++.++. ..+..++..-++...+|+..-.+|+.+.+++..
T Consensus 123 sg~ydlvILDEi~~Al~~gll~~eevl~~L~~rP~~~evVLTGR~ap~~Lie~ADl 178 (382)
T PRK07413 123 SGLYSVVVLDELNPVLDLGLLPVDEVVNTLKSRPEGLEIIITGRAAPQSLLDIADL 178 (382)
T ss_pred CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHhCCe
Confidence 457899999999988888764 456677777666667777777788887776543
No 466
>PRK14701 reverse gyrase; Provisional
Probab=81.51 E-value=3.6 Score=54.25 Aligned_cols=60 Identities=12% Similarity=0.277 Sum_probs=52.9
Q ss_pred CCcEEEEecccccHHHHHHHHHHc------CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehh
Q 003887 470 DGDVLVFASKKTTVDEIESQLAQK------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDV 529 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~------g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v 529 (789)
..++||.+|+++-+..+.+.|... ++.+..+||+++..++..+++.+++|..+|||+|.-
T Consensus 122 g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 122 GKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred CCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 458999999999999999988763 467789999999999999999999999999999953
No 467
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=81.43 E-value=3.2 Score=45.72 Aligned_cols=64 Identities=19% Similarity=0.199 Sum_probs=39.9
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHH-cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHH
Q 003887 237 MHAISKQGYEKPTSIQCQALPIIL-SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (789)
Q Consensus 237 ~~~l~~~g~~~ptpiQ~~ai~~il-~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa 311 (789)
++.|.+.|+ +++.+.+.+..+. .+.+++++++||+|||.. +-.++..+ . ...+++++--+.||.
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl-l~al~~~i-~-------~~~riv~iEd~~El~ 218 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL-LSALLALV-A-------PDERIVLVEDAAELR 218 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH-HHHHHccC-C-------CCCcEEEECCcceec
Confidence 444555554 4566777776655 457999999999999974 33333332 1 123466677776763
No 468
>PRK08840 replicative DNA helicase; Provisional
Probab=81.42 E-value=15 Score=42.24 Aligned_cols=115 Identities=15% Similarity=0.103 Sum_probs=52.9
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHH
Q 003887 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~ 340 (789)
.|.=+|+.|.+|+|||... +-+..++... .+..++|+..= .-..|+...+-... .++....+..|.-...
T Consensus 216 ~g~LiviaarPg~GKTafa-lnia~~~a~~------~~~~v~~fSlE-Ms~~ql~~Rlla~~--s~v~~~~i~~~~l~~~ 285 (464)
T PRK08840 216 GSDLIIVAARPSMGKTTFA-MNLCENAAMD------QDKPVLIFSLE-MPAEQLMMRMLASL--SRVDQTKIRTGQLDDE 285 (464)
T ss_pred CCceEEEEeCCCCchHHHH-HHHHHHHHHh------CCCeEEEEecc-CCHHHHHHHHHHhh--CCCCHHHHhcCCCCHH
Confidence 3445677899999999754 4444443211 13345655332 33344443332221 1222211222222222
Q ss_pred HHH-------HHhcCCcEEEe-----CHHHHHHHHhhccccccceeEEEEcccchhc
Q 003887 341 QFK-------ELKAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (789)
Q Consensus 341 ~~~-------~l~~~~dIiV~-----Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~ 385 (789)
.+. .+.....+.|. |...+...+++-......+++||||=.|.|.
T Consensus 286 e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 286 DWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMR 342 (464)
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcC
Confidence 222 22223445553 3444443332221112247899999988774
No 469
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=80.98 E-value=1.5 Score=50.49 Aligned_cols=48 Identities=15% Similarity=0.231 Sum_probs=31.1
Q ss_pred EeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcC
Q 003887 353 IATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR 401 (789)
Q Consensus 353 V~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~ 401 (789)
|-+||-..++-- ..+....-++.|+|||-.-++.+.+..+..++..+.
T Consensus 570 vLS~GEqQRLa~-ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~g 617 (659)
T KOG0060|consen 570 VLSPGEQQRLAF-ARLFYHKPKFAILDECTSAVTEDVEGALYRKCREMG 617 (659)
T ss_pred hcCHHHHHHHHH-HHHHhcCCceEEeechhhhccHHHHHHHHHHHHHcC
Confidence 345655544332 223466788999999998777766766666666543
No 470
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=80.94 E-value=4.4 Score=46.63 Aligned_cols=70 Identities=17% Similarity=0.330 Sum_probs=53.3
Q ss_pred CcEEEEecccccHHHHHHHHHHc-----CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeeh-----hhh-ccCCCCCc
Q 003887 471 GDVLVFASKKTTVDEIESQLAQK-----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-----VAA-RGLDIKSI 539 (789)
Q Consensus 471 ~kvLVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-----v~~-~GlDI~~v 539 (789)
.++||.|++++-+..+++.++.. ++.+..++|+.+...+...+. ....|+|+|. .+. ..+++.++
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l~~l 148 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDLDAL 148 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccHHHC
Confidence 37999999999999988877653 578889999998766544333 4678999993 333 35788888
Q ss_pred cEEEE
Q 003887 540 KSVVN 544 (789)
Q Consensus 540 ~~VI~ 544 (789)
.+||.
T Consensus 149 ~~lVi 153 (460)
T PRK11776 149 NTLVL 153 (460)
T ss_pred CEEEE
Confidence 88885
No 471
>PRK08760 replicative DNA helicase; Provisional
Probab=80.91 E-value=10 Score=43.81 Aligned_cols=112 Identities=18% Similarity=0.101 Sum_probs=54.9
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHH
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~ 341 (789)
|.=+++.|.+|+|||.. ++-+..++... .+..++|+.. -.-..|+...+..... ++....+..|.-....
T Consensus 229 G~LivIaarPg~GKTaf-al~iA~~~a~~------~g~~V~~fSl-EMs~~ql~~Rl~a~~s--~i~~~~i~~g~l~~~e 298 (476)
T PRK08760 229 TDLIILAARPAMGKTTF-ALNIAEYAAIK------SKKGVAVFSM-EMSASQLAMRLISSNG--RINAQRLRTGALEDED 298 (476)
T ss_pred CceEEEEeCCCCChhHH-HHHHHHHHHHh------cCCceEEEec-cCCHHHHHHHHHHhhC--CCcHHHHhcCCCCHHH
Confidence 34467889999999974 55555444321 1334666543 2333455544433321 2221112222222222
Q ss_pred HH-------HHhcCCcEEEe-----CHHHHHHHHhhccccccceeEEEEcccchhc
Q 003887 342 FK-------ELKAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (789)
Q Consensus 342 ~~-------~l~~~~dIiV~-----Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~ 385 (789)
+. .+. ...+.|. |+..+...+++-. .-..+++||||=.+.|.
T Consensus 299 ~~~~~~a~~~l~-~~~l~I~d~~~~t~~~I~~~~r~l~-~~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 299 WARVTGAIKMLK-ETKIFIDDTPGVSPEVLRSKCRRLK-REHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHHH-HhcCCCEEEEecHHhcC
Confidence 22 222 2445544 4455544443221 12357899999998774
No 472
>PF12846 AAA_10: AAA-like domain
Probab=80.89 E-value=4.4 Score=43.13 Aligned_cols=42 Identities=29% Similarity=0.491 Sum_probs=29.8
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHH
Q 003887 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAH 312 (789)
Q Consensus 263 rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~ 312 (789)
++++++|+||+|||.... .++..++.. +..++|+=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~~-------g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIRR-------GPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHc-------CCCEEEEcCCchHHH
Confidence 579999999999998644 555555433 566788877655553
No 473
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=80.85 E-value=8.4 Score=38.95 Aligned_cols=37 Identities=24% Similarity=0.196 Sum_probs=23.5
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcC
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP 306 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~P 306 (789)
|.-+.+.+++|+|||...+ -++.+... .+..++++.-
T Consensus 12 g~i~~i~G~~GsGKT~l~~-~~~~~~~~-------~g~~v~yi~~ 48 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICM-ILAVNAAR-------QGKKVVYIDT 48 (209)
T ss_pred CeEEEEECCCCCCHHHHHH-HHHHHHHh-------CCCeEEEEEC
Confidence 4567899999999998643 33333322 2445666655
No 474
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=80.73 E-value=6.2 Score=45.46 Aligned_cols=89 Identities=16% Similarity=0.216 Sum_probs=58.1
Q ss_pred CChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHh---c-
Q 003887 272 GSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK---A- 347 (789)
Q Consensus 272 GsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~---~- 347 (789)
...|-.- +.++|..++ .....++||.|-|+.-|.++...++.. ++.+.++||..+..+....|. .
T Consensus 322 ~~~K~~~-l~~lL~~~~------~~~~~KvIIFc~tkr~~~~l~~~l~~~----~~~a~~iHGd~sQ~eR~~~L~~FreG 390 (519)
T KOG0331|consen 322 ETAKLRK-LGKLLEDIS------SDSEGKVIIFCETKRTCDELARNLRRK----GWPAVAIHGDKSQSERDWVLKGFREG 390 (519)
T ss_pred HHHHHHH-HHHHHHHHh------ccCCCcEEEEecchhhHHHHHHHHHhc----CcceeeecccccHHHHHHHHHhcccC
Confidence 3445432 455555543 234668999999999999887777665 588999999887665544333 2
Q ss_pred CCcEEEeCHHHHHHHHhhccccccceeEEE
Q 003887 348 GCEIVIATPGRLIDMLKMKALTMSRVTYLV 377 (789)
Q Consensus 348 ~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lV 377 (789)
.+.|+|||. . ....+++..+++||
T Consensus 391 ~~~vLVATd-----V-AaRGLDi~dV~lVI 414 (519)
T KOG0331|consen 391 KSPVLVATD-----V-AARGLDVPDVDLVI 414 (519)
T ss_pred CcceEEEcc-----c-ccccCCCccccEEE
Confidence 489999993 2 22344555555554
No 475
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=80.72 E-value=5.8 Score=44.30 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=19.2
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHH
Q 003887 261 SGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla~llp~l~~l 287 (789)
.|+.++|.++.|+|||.. +-.+.+.+
T Consensus 168 kGQR~lIvgppGvGKTTL-aK~Ian~I 193 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVL-LQNIANSI 193 (416)
T ss_pred cCceEEEeCCCCCChhHH-HHHHHHHH
Confidence 678899999999999964 33344444
No 476
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=80.49 E-value=2.9 Score=49.58 Aligned_cols=44 Identities=25% Similarity=0.391 Sum_probs=32.7
Q ss_pred ccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEeccC
Q 003887 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl 413 (789)
+.+-.++|+|||..-+|..-+..+...+..+..++.+++.+.-+
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRl 524 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRL 524 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccH
Confidence 45568899999999888888888888887666666555555433
No 477
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=80.42 E-value=11 Score=43.32 Aligned_cols=37 Identities=14% Similarity=0.139 Sum_probs=21.7
Q ss_pred cceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEE
Q 003887 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLL 408 (789)
Q Consensus 371 ~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll 408 (789)
....+|||||+|.|.... ...+.+.+...+....+|+
T Consensus 120 ~~~kvvIIdead~lt~~~-~n~LLk~lEep~~~~~~Il 156 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEA-FNSLLKTLEEPPQHVKFFL 156 (451)
T ss_pred CCCEEEEEecHHhhCHHH-HHHHHHHhhcCCCCceEEE
Confidence 567899999999875422 2334444554333333443
No 478
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=80.41 E-value=19 Score=44.51 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=14.5
Q ss_pred CCCEEEEccCCChhhHH
Q 003887 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvl~~a~TGsGKTla 278 (789)
+..+++.+|+|+|||..
T Consensus 347 ~~~lll~GppG~GKT~l 363 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSL 363 (775)
T ss_pred CceEEEECCCCCCHHHH
Confidence 45689999999999965
No 479
>PHA00350 putative assembly protein
Probab=80.35 E-value=12 Score=41.99 Aligned_cols=23 Identities=22% Similarity=0.236 Sum_probs=16.5
Q ss_pred EEEEccCCChhhHHHHH-HHHHHH
Q 003887 265 IIGIAKTGSGKTAAFVL-PMIVHI 287 (789)
Q Consensus 265 vl~~a~TGsGKTla~ll-p~l~~l 287 (789)
.|+.+..|||||+..+. .++..+
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~pal 27 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPAL 27 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHH
Confidence 47889999999987665 344343
No 480
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=80.26 E-value=9.2 Score=36.38 Aligned_cols=40 Identities=18% Similarity=0.288 Sum_probs=27.7
Q ss_pred ccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEecc
Q 003887 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT 412 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT 412 (789)
+.+..++|+||.-.-+|......+..++..+. . +++++.-
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~--~-til~~th 125 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEYP--G-TVILVSH 125 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHcC--C-EEEEEEC
Confidence 44667899999998888766677777776662 3 4444443
No 481
>PRK07004 replicative DNA helicase; Provisional
Probab=80.21 E-value=10 Score=43.64 Aligned_cols=115 Identities=16% Similarity=0.125 Sum_probs=54.1
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHH
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~ 341 (789)
|.=+++.|.+|+|||.. ++-+..++.. ..+..++++.. ..-..|+...+-.. ..++....+..|.-....
T Consensus 213 g~liviaarpg~GKT~~-al~ia~~~a~------~~~~~v~~fSl-EM~~~ql~~R~la~--~~~v~~~~i~~g~l~~~e 282 (460)
T PRK07004 213 GELIIVAGRPSMGKTAF-SMNIGEYVAV------EYGLPVAVFSM-EMPGTQLAMRMLGS--VGRLDQHRMRTGRLTDED 282 (460)
T ss_pred CceEEEEeCCCCCccHH-HHHHHHHHHH------HcCCeEEEEeC-CCCHHHHHHHHHHh--hcCCCHHHHhcCCCCHHH
Confidence 45578899999999974 4544444421 12334555532 22333443333211 112222212122222222
Q ss_pred HHHH------hcCCcEEEe-----CHHHHHHHHhhccccccceeEEEEcccchhcc
Q 003887 342 FKEL------KAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMFD 386 (789)
Q Consensus 342 ~~~l------~~~~dIiV~-----Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~ 386 (789)
+..+ .....+.|. |+..+...+++-......+++||||=.+.|..
T Consensus 283 ~~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~ 338 (460)
T PRK07004 283 WPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSG 338 (460)
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccC
Confidence 2221 123556663 44444443332211223578999999998753
No 482
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=80.20 E-value=3.2 Score=45.17 Aligned_cols=42 Identities=26% Similarity=0.258 Sum_probs=26.9
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHH
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa 311 (789)
|+-+++.+++|+|||.. .+.++..... .+..++++-.-..+.
T Consensus 55 G~iteI~G~~GsGKTtL-aL~~~~~~~~-------~g~~v~yId~E~~~~ 96 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTL-ALHAIAEAQK-------AGGTAAFIDAEHALD 96 (321)
T ss_pred CeEEEEECCCCCCHHHH-HHHHHHHHHH-------cCCcEEEEcccchhH
Confidence 45678999999999985 4455554433 245567765544443
No 483
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=79.91 E-value=7.6 Score=44.28 Aligned_cols=70 Identities=20% Similarity=0.311 Sum_probs=50.9
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHH---Hhc-CCcEEEeCHHHHHHHHhhccccccce
Q 003887 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (789)
Q Consensus 298 gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~---l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i 373 (789)
..++||.|++++-|..+++.++.. ++.+..++|+.+..+.... +.. ..+|+||| +.+. ..+++..+
T Consensus 245 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaT-----d~~~-~GiDip~v 314 (434)
T PRK11192 245 VTRSIVFVRTRERVHELAGWLRKA----GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVAT-----DVAA-RGIDIDDV 314 (434)
T ss_pred CCeEEEEeCChHHHHHHHHHHHhC----CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEc-----cccc-cCccCCCC
Confidence 467999999999999888877763 7899999998876654333 333 47899999 3332 34457777
Q ss_pred eEEE
Q 003887 374 TYLV 377 (789)
Q Consensus 374 ~~lV 377 (789)
++||
T Consensus 315 ~~VI 318 (434)
T PRK11192 315 SHVI 318 (434)
T ss_pred CEEE
Confidence 7766
No 484
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=79.48 E-value=6.8 Score=44.05 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=14.4
Q ss_pred CCEEEEccCCChhhHH
Q 003887 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvl~~a~TGsGKTla 278 (789)
+.+|+.+|+|+|||+.
T Consensus 166 ~gvLL~GppGtGKT~l 181 (389)
T PRK03992 166 KGVLLYGPPGTGKTLL 181 (389)
T ss_pred CceEEECCCCCChHHH
Confidence 5799999999999975
No 485
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=79.47 E-value=7.4 Score=44.33 Aligned_cols=71 Identities=20% Similarity=0.301 Sum_probs=51.4
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHH---HHHhc-CCcEEEeCHHHHHHHHhhccccccc
Q 003887 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF---KELKA-GCEIVIATPGRLIDMLKMKALTMSR 372 (789)
Q Consensus 297 ~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~---~~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~ 372 (789)
..|.++|.+.|..-|.-+++.+.+. +++++.++||.+..+.. ..++. ..+|+|||. .. -..+++.+
T Consensus 516 ~~ppiIIFvN~kk~~d~lAk~LeK~----g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTD-----vA-gRGIDIpn 585 (673)
T KOG0333|consen 516 FDPPIIIFVNTKKGADALAKILEKA----GYKVTTLHGGKSQEQRENALADFREGTGDILVATD-----VA-GRGIDIPN 585 (673)
T ss_pred CCCCEEEEEechhhHHHHHHHHhhc----cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEec-----cc-ccCCCCCc
Confidence 3577899999999998887777776 79999999998765543 33444 589999993 22 23445667
Q ss_pred eeEEE
Q 003887 373 VTYLV 377 (789)
Q Consensus 373 i~~lV 377 (789)
+++||
T Consensus 586 VSlVi 590 (673)
T KOG0333|consen 586 VSLVI 590 (673)
T ss_pred cceee
Confidence 77665
No 486
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=79.41 E-value=8.7 Score=44.15 Aligned_cols=70 Identities=21% Similarity=0.313 Sum_probs=49.6
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHH---HHhc-CCcEEEeCHHHHHHHHhhccccccce
Q 003887 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (789)
Q Consensus 298 gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~---~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i 373 (789)
..++||.|+++.-|..+++.+.+. ++.+..++|+.+..+... .+.. ..+|+||| +.+. ..+++..+
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT-----dv~~-rGiDip~v 314 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKD----GIRSAAIHGNKSQGARTRALADFKSGDIRVLVAT-----DIAA-RGLDIEEL 314 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHC----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEc-----cHHh-cCCCcccC
Confidence 456899999999999888777654 788999999987654433 3333 47899999 3333 33456666
Q ss_pred eEEE
Q 003887 374 TYLV 377 (789)
Q Consensus 374 ~~lV 377 (789)
++||
T Consensus 315 ~~VI 318 (456)
T PRK10590 315 PHVV 318 (456)
T ss_pred CEEE
Confidence 6665
No 487
>CHL00176 ftsH cell division protein; Validated
Probab=79.27 E-value=9.6 Score=45.67 Aligned_cols=16 Identities=25% Similarity=0.530 Sum_probs=14.4
Q ss_pred CCEEEEccCCChhhHH
Q 003887 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvl~~a~TGsGKTla 278 (789)
+.+|+.+|+|+|||+.
T Consensus 217 ~gVLL~GPpGTGKT~L 232 (638)
T CHL00176 217 KGVLLVGPPGTGKTLL 232 (638)
T ss_pred ceEEEECCCCCCHHHH
Confidence 5799999999999975
No 488
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=79.25 E-value=4.3 Score=44.17 Aligned_cols=57 Identities=26% Similarity=0.134 Sum_probs=36.8
Q ss_pred CCCcHHHHHHHH-HHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHH
Q 003887 246 EKPTSIQCQALP-IILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (789)
Q Consensus 246 ~~ptpiQ~~ai~-~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa 311 (789)
..+++.|..-+- ++..+++++++++||||||.. +.+++..+- ..-+++.+=-|.++.
T Consensus 126 gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip--------~~~rivtIEdt~E~~ 183 (312)
T COG0630 126 GTISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIP--------PEERIVTIEDTPELK 183 (312)
T ss_pred CCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCC--------chhcEEEEecccccc
Confidence 455666665554 455778999999999999985 666665541 123355555555543
No 489
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=79.06 E-value=6.7 Score=40.96 Aligned_cols=102 Identities=12% Similarity=0.219 Sum_probs=66.3
Q ss_pred CCceeeccCCCCHHHHHHHHHHhhcCC----ccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhc-CCCCCCC
Q 003887 494 GFKAAALHGDKDQASRMEILQKFKSGV----YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRT-GRAGDKD 568 (789)
Q Consensus 494 g~~v~~lhg~~~~~eR~~~l~~F~~G~----~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~-gR~G~~~ 568 (789)
++.+..++++.+... -.|.++. ..|+|.=+.++|||.|.++.+..+...+.+.++++||.=-- -|.| -.
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~g-Y~ 183 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPG-YE 183 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCcc-cc
Confidence 477777776655432 3344433 78999999999999999999999999999888888874222 2444 24
Q ss_pred eEEEEEEccccHHHHHHHHHHHHHcCCCccHHHHHHH
Q 003887 569 GTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLA 605 (789)
Q Consensus 569 G~~i~l~~~~d~~~~~~l~~~L~~~~~~vp~~l~~~a 605 (789)
..|-+++++.-......+.. +...+-.++..++
T Consensus 184 dl~Ri~~~~~l~~~f~~i~~----~~e~lr~~i~~~~ 216 (239)
T PF10593_consen 184 DLCRIYMPEELYDWFRHIAE----AEEELREEIKEMA 216 (239)
T ss_pred cceEEecCHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 67777776655544444433 3334444444443
No 490
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=78.95 E-value=14 Score=43.89 Aligned_cols=63 Identities=22% Similarity=0.347 Sum_probs=37.4
Q ss_pred EcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhc
Q 003887 333 YGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI 400 (789)
Q Consensus 333 ~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~ 400 (789)
.||...-..++-.++ --|=+-||+++..|++-.... -++.|||+|.+..-...+.-..++..+
T Consensus 471 vGG~tDvAeIkGHRR--TYVGAMPGkiIq~LK~v~t~N---PliLiDEvDKlG~g~qGDPasALLElL 533 (906)
T KOG2004|consen 471 VGGMTDVAEIKGHRR--TYVGAMPGKIIQCLKKVKTEN---PLILIDEVDKLGSGHQGDPASALLELL 533 (906)
T ss_pred ccccccHHhhcccce--eeeccCChHHHHHHHhhCCCC---ceEEeehhhhhCCCCCCChHHHHHHhc
Confidence 456555444332222 245567999999997644322 368999999987433444444444444
No 491
>PTZ00110 helicase; Provisional
Probab=78.77 E-value=11 Score=44.49 Aligned_cols=72 Identities=22% Similarity=0.280 Sum_probs=51.6
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHH---HHHhc-CCcEEEeCHHHHHHHHhhccccccc
Q 003887 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF---KELKA-GCEIVIATPGRLIDMLKMKALTMSR 372 (789)
Q Consensus 297 ~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~---~~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~ 372 (789)
.+.++||.|+|+.-|..+...++.. ++.+.+++|+....+.. ..+.. ...|||||. .+. ..+++..
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~----g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTd-----v~~-rGIDi~~ 445 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLD----GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATD-----VAS-RGLDVKD 445 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHc----CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcc-----hhh-cCCCccc
Confidence 3578999999999999887777643 78889999988765433 33443 478999993 332 3456777
Q ss_pred eeEEEE
Q 003887 373 VTYLVL 378 (789)
Q Consensus 373 i~~lVl 378 (789)
+++||.
T Consensus 446 v~~VI~ 451 (545)
T PTZ00110 446 VKYVIN 451 (545)
T ss_pred CCEEEE
Confidence 887774
No 492
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=78.74 E-value=25 Score=42.43 Aligned_cols=116 Identities=15% Similarity=0.319 Sum_probs=72.2
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHH---HHHHhc-CCcEEEeCHHHHHHHHhhcccccc
Q 003887 296 EEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ---FKELKA-GCEIVIATPGRLIDMLKMKALTMS 371 (789)
Q Consensus 296 ~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~---~~~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~ 371 (789)
..+.++||+|+|+..|..+.+.+.+. ++.+.+++++....+. +..+.. ..+|+||| +.+ ...+.+.
T Consensus 440 ~~g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L-~rGfDiP 509 (655)
T TIGR00631 440 ARNERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLL-REGLDLP 509 (655)
T ss_pred cCCCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----Chh-cCCeeeC
Confidence 34678999999999998887777765 7888888887665433 233333 47899999 333 3456788
Q ss_pred ceeEEEEcccchhccCCChHHHHHHHhhcC--CCceEEEEeccCcHHHHHHH
Q 003887 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIR--PDRQTLLFSATMPRKVEKLA 421 (789)
Q Consensus 372 ~i~~lVlDEah~m~~~~f~~~i~~il~~~~--~~~q~ll~SATl~~~v~~l~ 421 (789)
.+++||+-+++...-......+..++.+.. .....+++-......+...+
T Consensus 510 ~v~lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~~~~~~ai 561 (655)
T TIGR00631 510 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYADKITDSMQKAI 561 (655)
T ss_pred CCcEEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCCHHHHHHH
Confidence 999998888876322222233333333221 22345555555555444433
No 493
>PRK06321 replicative DNA helicase; Provisional
Probab=78.66 E-value=14 Score=42.71 Aligned_cols=112 Identities=15% Similarity=0.077 Sum_probs=54.2
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHH
Q 003887 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (789)
Q Consensus 263 rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~ 342 (789)
.=+|+.|.+|+|||.. .+-+..++... .+..++++.. ..-..|+...+... ..++....+..+.-....+
T Consensus 227 ~LiiiaarPgmGKTaf-al~ia~~~a~~------~g~~v~~fSL-EMs~~ql~~Rlla~--~s~v~~~~i~~~~l~~~e~ 296 (472)
T PRK06321 227 NLMILAARPAMGKTAL-ALNIAENFCFQ------NRLPVGIFSL-EMTVDQLIHRIICS--RSEVESKKISVGDLSGRDF 296 (472)
T ss_pred cEEEEEeCCCCChHHH-HHHHHHHHHHh------cCCeEEEEec-cCCHHHHHHHHHHh--hcCCCHHHhhcCCCCHHHH
Confidence 3457789999999974 55555554321 1333555532 23333444333221 1123222222222222222
Q ss_pred H-------HHhcCCcEEEe-----CHHHHHHHHhhccccccceeEEEEcccchhcc
Q 003887 343 K-------ELKAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMFD 386 (789)
Q Consensus 343 ~-------~l~~~~dIiV~-----Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~ 386 (789)
. .+. ...+.|. |...+...+++-.. -..+++||||=.+.|..
T Consensus 297 ~~~~~a~~~l~-~~~~~idd~~~~ti~~i~~~~r~~~~-~~~~~lvvIDyLql~~~ 350 (472)
T PRK06321 297 QRIVSVVNEMQ-EHTLLIDDQPGLKITDLRARARRMKE-SYDIQFLIIDYLQLLSG 350 (472)
T ss_pred HHHHHHHHHHH-cCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHHcCC
Confidence 2 222 2456664 44555444433211 23478999999998753
No 494
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=78.46 E-value=18 Score=37.57 Aligned_cols=57 Identities=14% Similarity=0.106 Sum_probs=30.3
Q ss_pred EEEEccCCChhhHHHHHHHHHHHhcCcccc-----cCCCCEEEEEcCcHHHHHHHHHHHHHHhh
Q 003887 265 IIGIAKTGSGKTAAFVLPMIVHIMDQPELQ-----KEEGPIGVICAPTRELAHQIYLETKKFAK 323 (789)
Q Consensus 265 vl~~a~TGsGKTla~llp~l~~l~~~~~~~-----~~~gp~vLIl~PTreLa~Qi~~~~~k~~~ 323 (789)
.++.|+.|+|||...+-.++ ++....++. ...+.+|||+.- -.=..++.+.+..+..
T Consensus 4 ~ll~g~~G~GKS~lal~la~-~va~G~~~~g~~~~~~~~~~Vlyi~~-Ed~~~~i~~Rl~~i~~ 65 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLAL-AMALGKNLFGGGLKVTEPGRVVYLSA-EDPREEIHRRLEAILQ 65 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHH-HHhcCccccCCccccCCCceEEEEEC-CCCHHHHHHHHHHHHh
Confidence 58899999999986444333 333221111 123456788762 1122244445555544
No 495
>PRK07413 hypothetical protein; Validated
Probab=78.46 E-value=8.1 Score=42.92 Aligned_cols=53 Identities=19% Similarity=0.186 Sum_probs=38.6
Q ss_pred cceeEEEEcccchhccCCChH--HHHHHHhhcCCCceEEEEecc-CcHHHHHHHHH
Q 003887 371 SRVTYLVLDEADRMFDLGFEP--QIRSIVGQIRPDRQTLLFSAT-MPRKVEKLARE 423 (789)
Q Consensus 371 ~~i~~lVlDEah~m~~~~f~~--~i~~il~~~~~~~q~ll~SAT-l~~~v~~l~~~ 423 (789)
..+++|||||+-..++.++.+ .+..++...+....+|+..-. .|+.+.+++..
T Consensus 304 g~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVLTGR~~ap~~lie~ADl 359 (382)
T PRK07413 304 GLYKTIILDELNPTVDLELLPVEPIVQTLLRKPRDTEVIITGRCKNQPAYFDLASV 359 (382)
T ss_pred CCCCEEEEechHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHhCch
Confidence 568899999999988888664 667777776666566655555 77777666543
No 496
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=78.25 E-value=3.1 Score=49.22 Aligned_cols=38 Identities=18% Similarity=0.158 Sum_probs=26.1
Q ss_pred cHHHHHHHHHHHcC--CCEEEEccCCChhhHHHHHHHHHHH
Q 003887 249 TSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 249 tpiQ~~ai~~il~g--rdvl~~a~TGsGKTla~llp~l~~l 287 (789)
.+-|.+.+..++.. --+|++++||||||.. +..++.++
T Consensus 301 ~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt-l~a~l~~~ 340 (564)
T TIGR02538 301 EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVS-LYTALNIL 340 (564)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHHhh
Confidence 35566666655543 3467899999999986 45666665
No 497
>PRK09354 recA recombinase A; Provisional
Probab=78.18 E-value=5.7 Score=43.73 Aligned_cols=43 Identities=23% Similarity=0.218 Sum_probs=28.0
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHH
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAH 312 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~ 312 (789)
|+-+.+.+++|+|||... +.++..... .+..+++|-.-..+-.
T Consensus 60 G~IteI~G~~GsGKTtLa-l~~~~~~~~-------~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLA-LHAIAEAQK-------AGGTAAFIDAEHALDP 102 (349)
T ss_pred CeEEEEECCCCCCHHHHH-HHHHHHHHH-------cCCcEEEECCccchHH
Confidence 456789999999999864 444444322 2566787766555543
No 498
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.16 E-value=18 Score=43.23 Aligned_cols=42 Identities=7% Similarity=0.121 Sum_probs=25.4
Q ss_pred ccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEeccC
Q 003887 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl 413 (789)
+....++||||+|+|.... ...+.+++...+... +++|.+|-
T Consensus 119 ~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~t-ifIL~tt~ 160 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYA-IFILATTE 160 (614)
T ss_pred cCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCe-EEEEEeCC
Confidence 5678999999999975432 234455555544333 44455553
No 499
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=78.15 E-value=2 Score=50.79 Aligned_cols=154 Identities=16% Similarity=0.160 Sum_probs=86.2
Q ss_pred CCCcHHHHHHHHHHHcCC----------CEEEEcc--CCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHH
Q 003887 246 EKPTSIQCQALPIILSGR----------DIIGIAK--TGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQ 313 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~gr----------dvl~~a~--TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Q 313 (789)
..+...|.+++-.+.+.+ ..||-.. .|-|.|++-+ .+-++| ....++|.+.-+..|-..
T Consensus 263 g~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgi-IfeNyL--------kGRKrAlW~SVSsDLKfD 333 (1300)
T KOG1513|consen 263 GHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGI-IFENYL--------KGRKRALWFSVSSDLKFD 333 (1300)
T ss_pred cchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEE-Eehhhh--------cccceeEEEEeccccccc
Confidence 456778888886665432 2455444 4456676533 223444 335678999888888766
Q ss_pred HHHHHHHHhhhcCcEEEEEE----cCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhc--cc--c----c-----cceeEE
Q 003887 314 IYLETKKFAKSHGIRVSAVY----GGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK--AL--T----M-----SRVTYL 376 (789)
Q Consensus 314 i~~~~~k~~~~~~i~v~~~~----gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~--~~--~----l-----~~i~~l 376 (789)
-.+.+..... .+|.|..+. +..+..+. ... .--||+||+-.|+-.-... .. . + ..=.+|
T Consensus 334 AERDL~DigA-~~I~V~alnK~KYakIss~en-~n~--krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvI 409 (1300)
T KOG1513|consen 334 AERDLRDIGA-TGIAVHALNKFKYAKISSKEN-TNT--KRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVI 409 (1300)
T ss_pred hhhchhhcCC-CCccceehhhccccccccccc-CCc--cceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeE
Confidence 6555555432 345543321 11100000 001 1459999999887543311 00 0 1 112689
Q ss_pred EEcccchhccC---------CChHHHHHHHhhcCCCceEEEEeccC
Q 003887 377 VLDEADRMFDL---------GFEPQIRSIVGQIRPDRQTLLFSATM 413 (789)
Q Consensus 377 VlDEah~m~~~---------~f~~~i~~il~~~~~~~q~ll~SATl 413 (789)
||||||+-.+. .....+..+-..++ ..+++.-|||=
T Consensus 410 vfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASATG 454 (1300)
T KOG1513|consen 410 VFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASATG 454 (1300)
T ss_pred EehhhhhhcccccccCCCcCcccHhHHHHHHhCC-CceEEEeeccC
Confidence 99999976552 13455666666664 66789999993
No 500
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=78.01 E-value=1.7 Score=46.13 Aligned_cols=43 Identities=26% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCC-CEEEEEcCcHHH
Q 003887 259 ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEG-PIGVICAPTREL 310 (789)
Q Consensus 259 il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~g-p~vLIl~PTreL 310 (789)
+..+.+++++|+||||||.. +-.++.++ ... .+++++-.+.|+
T Consensus 124 v~~~~~ili~G~tGSGKTT~-l~all~~i--------~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 124 VRGRGNILISGPTGSGKTTL-LNALLEEI--------PPEDERIVTIEDPPEL 167 (270)
T ss_dssp HHTTEEEEEEESTTSSHHHH-HHHHHHHC--------HTTTSEEEEEESSS-S
T ss_pred cccceEEEEECCCccccchH-HHHHhhhc--------cccccceEEeccccce
Done!