Query 003887
Match_columns 789
No_of_seqs 556 out of 3649
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 07:17:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003887.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003887hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 7.4E-66 2.5E-70 583.6 43.4 391 210-604 41-434 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 5.9E-59 2E-63 522.7 45.7 393 213-607 3-412 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 3.9E-56 1.3E-60 499.1 37.8 372 220-598 32-403 (410)
4 3eiq_A Eukaryotic initiation f 100.0 4.4E-55 1.5E-59 490.4 34.1 380 218-604 33-413 (414)
5 1s2m_A Putative ATP-dependent 100.0 7.5E-53 2.6E-57 470.7 38.6 371 221-600 17-387 (400)
6 1xti_A Probable ATP-dependent 100.0 3E-52 1E-56 463.8 37.9 367 225-599 8-379 (391)
7 1fuu_A Yeast initiation factor 100.0 8E-54 2.7E-58 476.7 24.3 375 220-602 16-390 (394)
8 3pey_A ATP-dependent RNA helic 100.0 1.1E-51 3.9E-56 458.9 39.9 358 222-590 2-369 (395)
9 3fht_A ATP-dependent RNA helic 100.0 7E-52 2.4E-56 463.8 38.1 369 221-599 21-401 (412)
10 3sqw_A ATP-dependent RNA helic 100.0 6.9E-52 2.4E-56 486.0 38.0 365 224-590 16-410 (579)
11 1hv8_A Putative ATP-dependent 100.0 6E-51 2.1E-55 448.4 42.0 356 224-594 5-361 (367)
12 3i5x_A ATP-dependent RNA helic 100.0 1.3E-51 4.3E-56 482.2 36.3 357 232-590 79-461 (563)
13 3fmp_B ATP-dependent RNA helic 100.0 7.4E-53 2.5E-57 483.0 20.6 367 223-599 90-468 (479)
14 2z0m_A 337AA long hypothetical 100.0 6.3E-49 2.2E-53 427.5 39.0 335 232-591 1-335 (337)
15 2v1x_A ATP-dependent DNA helic 100.0 1.8E-47 6.3E-52 446.7 36.4 347 224-587 18-383 (591)
16 3fho_A ATP-dependent RNA helic 100.0 2E-49 6.8E-54 457.7 18.0 371 218-599 112-492 (508)
17 3oiy_A Reverse gyrase helicase 100.0 5.1E-47 1.7E-51 426.3 29.5 326 236-591 10-376 (414)
18 1oyw_A RECQ helicase, ATP-depe 100.0 1.1E-45 3.8E-50 427.0 35.1 342 224-588 1-353 (523)
19 1tf5_A Preprotein translocase 100.0 3.5E-45 1.2E-49 428.6 24.2 374 180-580 20-547 (844)
20 3l9o_A ATP-dependent RNA helic 100.0 5.2E-45 1.8E-49 451.5 26.2 331 226-578 163-597 (1108)
21 4a2p_A RIG-I, retinoic acid in 100.0 5.2E-44 1.8E-48 416.0 28.5 330 245-580 5-510 (556)
22 2va8_A SSO2462, SKI2-type heli 100.0 1E-42 3.5E-47 418.1 34.0 341 224-580 7-410 (715)
23 3tbk_A RIG-I helicase domain; 100.0 1.2E-43 4.1E-48 412.4 25.1 330 246-583 3-512 (555)
24 2zj8_A DNA helicase, putative 100.0 5E-43 1.7E-47 421.0 28.0 335 226-580 2-389 (720)
25 2ykg_A Probable ATP-dependent 100.0 1E-43 3.5E-48 425.6 21.7 341 238-584 4-522 (696)
26 4a2q_A RIG-I, retinoic acid in 100.0 2.2E-42 7.4E-47 419.7 30.3 332 243-580 244-751 (797)
27 2p6r_A Afuhel308 helicase; pro 100.0 5.3E-43 1.8E-47 419.6 23.5 334 226-580 2-390 (702)
28 4ddu_A Reverse gyrase; topoiso 100.0 4.5E-42 1.5E-46 425.2 31.4 320 243-592 75-504 (1104)
29 1wp9_A ATP-dependent RNA helic 100.0 1.5E-41 5E-46 386.3 30.3 324 247-581 9-478 (494)
30 2fsf_A Preprotein translocase 100.0 1.1E-42 3.9E-47 406.2 20.9 365 192-580 23-585 (853)
31 1gku_B Reverse gyrase, TOP-RG; 100.0 1.3E-42 4.5E-47 430.1 22.5 324 238-592 48-468 (1054)
32 2xgj_A ATP-dependent RNA helic 100.0 1.9E-40 6.5E-45 407.5 36.1 318 244-585 84-507 (1010)
33 4a2w_A RIG-I, retinoic acid in 100.0 2.5E-41 8.7E-46 415.1 27.7 332 243-580 244-751 (936)
34 1nkt_A Preprotein translocase 100.0 3E-41 1E-45 394.4 25.9 325 242-582 107-621 (922)
35 1gm5_A RECG; helicase, replica 100.0 3.2E-41 1.1E-45 402.4 23.0 346 234-606 356-724 (780)
36 4gl2_A Interferon-induced heli 100.0 1.7E-41 5.8E-46 406.6 19.6 324 246-577 6-517 (699)
37 3fe2_A Probable ATP-dependent 100.0 4.1E-39 1.4E-43 335.5 28.5 238 199-436 3-240 (242)
38 2eyq_A TRCF, transcription-rep 100.0 2.3E-38 8E-43 394.4 38.7 337 230-592 586-938 (1151)
39 4a4z_A Antiviral helicase SKI2 100.0 3.6E-39 1.2E-43 396.1 28.7 308 247-576 39-490 (997)
40 4f92_B U5 small nuclear ribonu 100.0 7E-38 2.4E-42 400.5 35.0 344 232-586 911-1316(1724)
41 2whx_A Serine protease/ntpase/ 100.0 4.2E-40 1.4E-44 385.8 10.4 322 230-597 155-500 (618)
42 2oca_A DAR protein, ATP-depend 100.0 4.5E-39 1.5E-43 371.4 16.8 311 246-575 112-452 (510)
43 4f92_B U5 small nuclear ribonu 100.0 1.9E-37 6.4E-42 396.6 32.5 338 244-586 76-481 (1724)
44 2jlq_A Serine protease subunit 100.0 1.5E-38 5.1E-43 361.3 14.5 288 244-577 1-310 (451)
45 2fwr_A DNA repair protein RAD2 100.0 1.4E-37 5E-42 355.4 17.3 295 246-578 92-454 (472)
46 1yks_A Genome polyprotein [con 100.0 1.6E-38 5.6E-43 359.5 7.5 286 258-598 4-322 (440)
47 2xau_A PRE-mRNA-splicing facto 100.0 4.8E-37 1.7E-41 368.5 15.5 339 221-580 68-445 (773)
48 1wrb_A DJVLGB; RNA helicase, D 100.0 7.1E-36 2.4E-40 312.9 22.1 236 211-446 7-252 (253)
49 3o8b_A HCV NS3 protease/helica 100.0 1.9E-37 6.4E-42 360.8 9.8 279 247-582 217-518 (666)
50 2wv9_A Flavivirin protease NS2 100.0 3.2E-37 1.1E-41 363.8 10.7 306 240-590 203-548 (673)
51 3iuy_A Probable ATP-dependent 100.0 4.3E-35 1.5E-39 302.0 23.2 217 216-433 10-228 (228)
52 2z83_A Helicase/nucleoside tri 100.0 3.3E-36 1.1E-40 342.6 10.9 272 256-578 15-313 (459)
53 3ber_A Probable ATP-dependent 100.0 4.4E-34 1.5E-38 298.9 25.3 209 221-434 39-248 (249)
54 2v6i_A RNA helicase; membrane, 100.0 1E-34 3.4E-39 327.8 21.4 270 261-575 1-288 (431)
55 3bor_A Human initiation factor 100.0 2.6E-34 9E-39 298.2 22.9 214 216-434 21-235 (237)
56 2pl3_A Probable ATP-dependent 100.0 1.4E-33 4.9E-38 292.2 26.3 227 201-434 6-233 (236)
57 3dkp_A Probable ATP-dependent 100.0 2.5E-34 8.4E-39 299.6 20.7 230 203-436 3-243 (245)
58 2oxc_A Probable ATP-dependent 100.0 8.7E-34 3E-38 292.9 23.7 212 216-433 15-228 (230)
59 3h1t_A Type I site-specific re 100.0 6.8E-35 2.3E-39 342.6 17.2 305 246-566 177-545 (590)
60 1q0u_A Bstdead; DEAD protein, 100.0 5.1E-34 1.7E-38 292.2 20.8 207 223-434 2-212 (219)
61 3fmo_B ATP-dependent RNA helic 100.0 7E-34 2.4E-38 305.5 22.3 204 223-434 90-298 (300)
62 1vec_A ATP-dependent RNA helic 100.0 2.9E-33 1E-37 283.3 25.2 202 225-431 3-205 (206)
63 1qde_A EIF4A, translation init 100.0 1.9E-33 6.6E-38 288.6 23.8 212 218-435 7-218 (224)
64 1z63_A Helicase of the SNF2/RA 100.0 1.9E-33 6.5E-38 323.6 25.4 312 246-578 36-453 (500)
65 2gxq_A Heat resistant RNA depe 100.0 8.5E-33 2.9E-37 279.9 25.0 204 226-433 2-205 (207)
66 3dmq_A RNA polymerase-associat 100.0 1.1E-33 3.6E-38 348.1 20.4 316 246-574 152-609 (968)
67 3mwy_W Chromo domain-containin 100.0 1.6E-32 5.5E-37 332.5 29.9 372 188-578 180-684 (800)
68 3ly5_A ATP-dependent RNA helic 100.0 1.9E-32 6.3E-37 288.8 23.7 204 225-429 52-258 (262)
69 1t6n_A Probable ATP-dependent 100.0 1.5E-32 5.2E-37 281.2 22.1 208 220-432 9-219 (220)
70 1z3i_X Similar to RAD54-like; 100.0 1.8E-31 6.2E-36 315.7 33.7 325 246-578 54-528 (644)
71 3rc3_A ATP-dependent RNA helic 100.0 6.1E-33 2.1E-37 326.4 20.3 283 256-584 149-450 (677)
72 3jux_A Protein translocase sub 100.0 3.8E-30 1.3E-34 294.8 29.6 317 247-581 75-590 (822)
73 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 1.7E-29 5.6E-34 308.9 25.1 324 234-576 251-707 (1038)
74 2ipc_A Preprotein translocase 99.9 3.1E-26 1.1E-30 266.8 31.0 130 243-385 76-215 (997)
75 2p6n_A ATP-dependent RNA helic 99.9 2.4E-27 8.4E-32 237.5 18.0 180 422-605 9-189 (191)
76 1c4o_A DNA nucleotide excision 99.9 1E-26 3.5E-31 275.0 23.0 176 402-588 379-560 (664)
77 2jgn_A DBX, DDX3, ATP-dependen 99.9 2.3E-26 7.9E-31 229.2 16.2 169 437-607 14-182 (185)
78 2d7d_A Uvrabc system protein B 99.9 1.8E-25 6.1E-30 264.3 23.1 175 402-587 385-565 (661)
79 2hjv_A ATP-dependent RNA helic 99.9 2.4E-24 8.1E-29 210.1 16.4 150 438-590 5-154 (163)
80 2rb4_A ATP-dependent RNA helic 99.9 1.5E-24 5.2E-29 214.0 15.2 154 439-594 4-163 (175)
81 1t5i_A C_terminal domain of A 99.9 2.2E-24 7.4E-29 212.4 13.2 158 441-601 4-162 (172)
82 1fuk_A Eukaryotic initiation f 99.9 1.4E-24 4.8E-29 212.1 11.7 157 441-599 2-158 (165)
83 3eaq_A Heat resistant RNA depe 99.9 5.4E-23 1.8E-27 209.4 14.9 139 452-592 14-152 (212)
84 3b6e_A Interferon-induced heli 99.9 4.3E-23 1.5E-27 209.4 12.8 166 244-412 30-216 (216)
85 3i32_A Heat resistant RNA depe 99.9 2.8E-22 9.7E-27 214.2 14.8 147 443-592 3-149 (300)
86 2yjt_D ATP-dependent RNA helic 99.8 5.6E-24 1.9E-28 209.0 0.0 148 442-591 3-150 (170)
87 2vl7_A XPD; helicase, unknown 99.9 1.6E-21 5.5E-26 225.9 20.3 299 243-573 4-517 (540)
88 1rif_A DAR protein, DNA helica 99.8 3.5E-21 1.2E-25 204.6 12.7 156 246-418 112-267 (282)
89 3llm_A ATP-dependent RNA helic 99.8 6.7E-21 2.3E-25 197.0 14.0 180 236-429 50-232 (235)
90 3crv_A XPD/RAD3 related DNA he 99.8 2.1E-19 7.1E-24 208.8 27.7 281 247-549 3-473 (551)
91 4a15_A XPD helicase, ATP-depen 99.8 2.2E-17 7.6E-22 193.6 22.6 313 247-574 3-581 (620)
92 2fz4_A DNA repair protein RAD2 99.7 8E-18 2.7E-22 174.1 15.1 139 246-416 92-231 (237)
93 1z5z_A Helicase of the SNF2/RA 99.7 5.6E-18 1.9E-22 178.6 10.4 127 452-578 93-224 (271)
94 1w36_D RECD, exodeoxyribonucle 98.8 8.4E-09 2.9E-13 120.7 9.2 146 249-412 151-298 (608)
95 3hgt_A HDA1 complex subunit 3; 98.1 5.2E-06 1.8E-10 88.0 8.7 124 453-581 107-240 (328)
96 2gk6_A Regulator of nonsense t 98.0 3E-05 1E-09 90.9 14.3 70 245-321 178-247 (624)
97 4b3f_X DNA-binding protein smu 98.0 1.1E-05 3.7E-10 95.2 9.4 68 246-321 188-256 (646)
98 3lfu_A DNA helicase II; SF1 he 98.0 0.00016 5.6E-09 85.0 18.8 72 246-323 8-79 (647)
99 3upu_A ATP-dependent DNA helic 97.9 2.7E-05 9.2E-10 87.9 11.2 136 242-412 20-164 (459)
100 3e1s_A Exodeoxyribonuclease V, 97.9 2.1E-05 7.3E-10 91.0 10.4 124 246-412 188-315 (574)
101 2xzl_A ATP-dependent helicase 97.9 4.2E-05 1.4E-09 91.9 12.8 70 245-321 358-427 (802)
102 2wjy_A Regulator of nonsense t 97.9 6.5E-05 2.2E-09 90.2 13.3 70 245-321 354-423 (800)
103 1uaa_A REP helicase, protein ( 97.1 0.0037 1.3E-07 73.8 14.6 71 247-323 2-72 (673)
104 2o0j_A Terminase, DNA packagin 97.0 0.004 1.4E-07 68.0 12.3 72 247-324 163-234 (385)
105 3cpe_A Terminase, DNA packagin 96.7 0.0091 3.1E-07 69.4 13.0 143 247-410 163-311 (592)
106 3ec2_A DNA replication protein 96.1 0.0073 2.5E-07 58.3 6.6 30 249-278 16-54 (180)
107 1pjr_A PCRA; DNA repair, DNA r 96.0 0.023 7.7E-07 67.7 11.6 110 246-383 10-121 (724)
108 1xx6_A Thymidine kinase; NESG, 95.8 0.011 3.8E-07 58.1 6.2 39 262-308 8-46 (191)
109 2orw_A Thymidine kinase; TMTK, 95.8 0.025 8.7E-07 55.1 8.7 40 261-308 2-41 (184)
110 3vkw_A Replicase large subunit 95.7 0.021 7.3E-07 63.2 8.7 107 264-412 163-269 (446)
111 2j9r_A Thymidine kinase; TK1, 95.5 0.0087 3E-07 59.7 4.3 39 263-309 29-67 (214)
112 3kl4_A SRP54, signal recogniti 95.0 0.087 3E-06 58.3 10.7 132 263-425 98-235 (433)
113 2b8t_A Thymidine kinase; deoxy 95.0 0.017 5.8E-07 58.2 4.4 90 262-384 12-101 (223)
114 2zpa_A Uncharacterized protein 94.9 0.046 1.6E-06 63.6 8.3 113 247-414 175-289 (671)
115 3te6_A Regulatory protein SIR3 94.7 0.19 6.7E-06 53.2 12.0 26 262-288 45-70 (318)
116 1l8q_A Chromosomal replication 94.6 0.099 3.4E-06 55.4 9.6 17 262-278 37-53 (324)
117 2p65_A Hypothetical protein PF 94.5 0.22 7.6E-06 47.2 11.1 17 262-278 43-59 (187)
118 2kjq_A DNAA-related protein; s 94.5 0.018 6.1E-07 54.1 3.0 41 371-412 82-123 (149)
119 2orv_A Thymidine kinase; TP4A 94.4 0.052 1.8E-06 54.6 6.2 40 261-308 18-57 (234)
120 1g5t_A COB(I)alamin adenosyltr 94.2 0.26 9E-06 48.3 10.8 139 263-421 29-171 (196)
121 1d2n_A N-ethylmaleimide-sensit 94.2 0.49 1.7E-05 48.5 13.6 16 263-278 65-80 (272)
122 2v1u_A Cell division control p 94.1 0.12 4.2E-06 55.6 9.1 17 262-278 44-60 (387)
123 2w58_A DNAI, primosome compone 94.0 0.19 6.5E-06 49.0 9.6 16 263-278 55-70 (202)
124 1jbk_A CLPB protein; beta barr 93.7 0.38 1.3E-05 45.6 11.0 16 263-278 44-59 (195)
125 1gm5_A RECG; helicase, replica 93.6 0.099 3.4E-06 62.4 7.8 99 448-546 394-498 (780)
126 3dm5_A SRP54, signal recogniti 93.6 0.32 1.1E-05 53.9 11.3 132 263-425 101-236 (443)
127 2qby_B CDC6 homolog 3, cell di 93.3 0.33 1.1E-05 52.3 10.8 16 263-278 46-61 (384)
128 3u4q_A ATP-dependent helicase/ 93.2 0.14 4.7E-06 64.6 8.6 72 246-321 9-80 (1232)
129 1fnn_A CDC6P, cell division co 93.1 0.18 6.2E-06 54.4 8.4 15 264-278 46-60 (389)
130 2chg_A Replication factor C sm 93.1 0.6 2E-05 45.4 11.5 39 371-410 101-139 (226)
131 2z4s_A Chromosomal replication 93.0 0.25 8.5E-06 55.0 9.4 44 372-415 194-239 (440)
132 3e2i_A Thymidine kinase; Zn-bi 92.7 0.083 2.8E-06 52.6 4.4 41 261-309 27-67 (219)
133 3eie_A Vacuolar protein sortin 92.6 0.8 2.7E-05 48.3 12.4 50 223-278 13-67 (322)
134 1a5t_A Delta prime, HOLB; zinc 92.5 0.18 6.3E-06 53.7 7.3 39 249-288 4-49 (334)
135 3oiy_A Reverse gyrase helicase 92.4 0.29 1E-05 53.5 8.9 96 449-544 42-145 (414)
136 3h4m_A Proteasome-activating n 92.2 0.092 3.2E-06 54.3 4.2 53 223-278 12-67 (285)
137 3u61_B DNA polymerase accessor 92.0 0.17 5.7E-06 53.5 6.1 41 371-411 104-144 (324)
138 1w4r_A Thymidine kinase; type 91.7 0.17 5.7E-06 49.6 5.1 39 261-307 19-57 (195)
139 3cf0_A Transitional endoplasmi 91.6 0.79 2.7E-05 47.9 10.7 53 223-278 10-65 (301)
140 2qby_A CDC6 homolog 1, cell di 91.5 0.53 1.8E-05 50.4 9.5 17 262-278 45-61 (386)
141 2qgz_A Helicase loader, putati 91.3 0.65 2.2E-05 48.9 9.6 17 262-278 152-168 (308)
142 3bos_A Putative DNA replicatio 91.3 0.2 6.8E-06 49.9 5.4 18 261-278 51-68 (242)
143 3co5_A Putative two-component 90.9 0.17 5.7E-06 46.8 4.1 20 259-278 24-43 (143)
144 3syl_A Protein CBBX; photosynt 90.9 0.23 7.8E-06 51.9 5.6 16 263-278 68-83 (309)
145 3pfi_A Holliday junction ATP-d 90.5 1.6 5.3E-05 46.1 11.9 16 263-278 56-71 (338)
146 1sxj_E Activator 1 40 kDa subu 90.4 0.55 1.9E-05 50.0 8.2 43 370-413 132-174 (354)
147 1njg_A DNA polymerase III subu 90.2 2.9 0.0001 40.8 13.0 15 264-278 47-61 (250)
148 2rb4_A ATP-dependent RNA helic 89.3 1.4 4.8E-05 41.8 9.4 71 298-378 34-108 (175)
149 2qz4_A Paraplegin; AAA+, SPG7, 89.3 4.8 0.00016 40.3 14.0 17 262-278 39-55 (262)
150 2p6n_A ATP-dependent RNA helic 89.2 2.3 7.9E-05 41.1 11.0 71 298-378 54-128 (191)
151 2hjv_A ATP-dependent RNA helic 89.2 1.1 3.9E-05 41.9 8.5 73 298-380 35-111 (163)
152 1t6n_A Probable ATP-dependent 89.0 2.1 7.3E-05 41.9 10.8 72 470-544 82-164 (220)
153 1xwi_A SKD1 protein; VPS4B, AA 88.9 2.9 9.8E-05 44.1 12.3 50 223-278 7-61 (322)
154 4b4t_J 26S protease regulatory 88.8 1.4 4.8E-05 48.1 9.8 53 223-278 143-198 (405)
155 2eyq_A TRCF, transcription-rep 88.7 1.2 4.2E-05 55.5 10.6 99 446-544 627-731 (1151)
156 4ddu_A Reverse gyrase; topoiso 88.6 0.56 1.9E-05 58.2 7.3 97 448-544 98-202 (1104)
157 1iqp_A RFCS; clamp loader, ext 88.2 1.9 6.4E-05 44.9 10.3 39 371-410 109-147 (327)
158 2oxc_A Probable ATP-dependent 87.5 2.9 0.0001 41.3 10.8 93 447-544 65-172 (230)
159 1sxj_D Activator 1 41 kDa subu 87.4 1 3.4E-05 47.8 7.6 40 371-411 132-171 (353)
160 1fuk_A Eukaryotic initiation f 87.1 1.9 6.4E-05 40.5 8.5 73 298-380 30-106 (165)
161 2fna_A Conserved hypothetical 87.1 15 0.0005 38.3 16.6 52 355-410 123-177 (357)
162 2dr3_A UPF0273 protein PH0284; 87.0 2.9 0.0001 41.5 10.4 50 261-319 22-71 (247)
163 3vfd_A Spastin; ATPase, microt 86.9 1.4 4.8E-05 47.8 8.6 17 262-278 148-164 (389)
164 2r6a_A DNAB helicase, replicat 86.9 2.2 7.6E-05 47.3 10.4 115 261-387 202-328 (454)
165 2v1x_A ATP-dependent DNA helic 86.7 1.1 3.6E-05 51.9 7.7 79 447-528 63-144 (591)
166 3eaq_A Heat resistant RNA depe 86.6 2 6.8E-05 42.3 8.8 71 298-378 31-105 (212)
167 1t5i_A C_terminal domain of A 86.4 1.7 5.8E-05 41.2 7.9 73 298-380 31-107 (172)
168 2q6t_A DNAB replication FORK h 86.1 1.9 6.4E-05 47.8 9.2 115 262-387 200-325 (444)
169 1jr3_A DNA polymerase III subu 85.7 3.5 0.00012 43.8 10.9 15 264-278 40-54 (373)
170 1w5s_A Origin recognition comp 85.5 0.86 2.9E-05 49.4 6.0 16 263-278 51-68 (412)
171 2pk2_A Cyclin-T1, protein TAT; 85.4 0.52 1.8E-05 50.8 4.0 27 580-606 231-257 (358)
172 2qp9_X Vacuolar protein sortin 85.3 1.3 4.5E-05 47.5 7.2 16 263-278 85-100 (355)
173 1n0w_A DNA repair protein RAD5 84.7 4.1 0.00014 40.3 10.2 19 261-279 23-41 (243)
174 3e70_C DPA, signal recognition 84.6 3.6 0.00012 43.6 10.1 136 262-425 129-265 (328)
175 4b4t_K 26S protease regulatory 84.6 9.2 0.00031 42.0 13.6 54 222-278 166-222 (428)
176 1xti_A Probable ATP-dependent 84.3 4.2 0.00014 43.4 10.7 94 448-544 50-158 (391)
177 1sxj_C Activator 1 40 kDa subu 84.1 2.4 8.4E-05 44.8 8.6 39 371-410 109-147 (340)
178 3hu3_A Transitional endoplasmi 84.0 1.7 5.7E-05 48.9 7.5 43 373-415 298-350 (489)
179 1sxj_B Activator 1 37 kDa subu 83.8 2.9 0.0001 43.3 9.0 38 372-410 107-144 (323)
180 3pvs_A Replication-associated 83.8 1 3.4E-05 50.1 5.5 16 263-278 51-66 (447)
181 1sxj_A Activator 1 95 kDa subu 83.6 2.1 7.1E-05 48.4 8.2 41 371-413 147-189 (516)
182 2w0m_A SSO2452; RECA, SSPF, un 83.2 2.6 8.9E-05 41.3 7.9 18 261-278 22-39 (235)
183 3hjh_A Transcription-repair-co 83.0 3.2 0.00011 46.5 9.2 52 261-323 13-64 (483)
184 4a1f_A DNAB helicase, replicat 82.6 1.7 5.8E-05 46.3 6.5 114 262-386 46-170 (338)
185 3ber_A Probable ATP-dependent 82.5 4 0.00014 41.1 9.1 71 470-544 111-192 (249)
186 4b4t_H 26S protease regulatory 82.3 1.2 4.1E-05 49.4 5.2 54 222-278 203-259 (467)
187 3bor_A Human initiation factor 82.2 3.7 0.00013 40.8 8.7 73 469-544 97-179 (237)
188 1hqc_A RUVB; extended AAA-ATPa 82.0 4.2 0.00015 42.3 9.4 16 263-278 39-54 (324)
189 2gno_A DNA polymerase III, gam 81.8 5.5 0.00019 41.6 10.1 40 370-410 80-119 (305)
190 1vec_A ATP-dependent RNA helic 81.8 6.1 0.00021 38.0 9.8 72 469-544 70-152 (206)
191 3t15_A Ribulose bisphosphate c 81.7 1.5 5E-05 45.7 5.5 16 263-278 37-52 (293)
192 2qen_A Walker-type ATPase; unk 81.4 4 0.00014 42.7 9.0 18 261-278 30-47 (350)
193 1cr0_A DNA primase/helicase; R 81.4 2.1 7.3E-05 44.3 6.7 19 261-279 34-52 (296)
194 1qvr_A CLPB protein; coiled co 81.2 3 0.0001 50.3 8.8 16 263-278 192-207 (854)
195 2jgn_A DBX, DDX3, ATP-dependen 81.0 2.7 9.4E-05 40.3 6.9 71 298-378 46-120 (185)
196 2px0_A Flagellar biosynthesis 80.9 5.3 0.00018 41.6 9.5 18 261-278 104-121 (296)
197 1oyw_A RECQ helicase, ATP-depe 80.6 1.8 6.2E-05 49.0 6.2 59 470-528 65-123 (523)
198 3fe2_A Probable ATP-dependent 80.4 5.3 0.00018 39.8 9.0 71 470-544 102-182 (242)
199 1ls1_A Signal recognition part 79.7 9.8 0.00034 39.4 11.1 52 371-422 179-231 (295)
200 3i5x_A ATP-dependent RNA helic 79.6 12 0.00041 42.3 12.8 78 297-381 338-419 (563)
201 1vma_A Cell division protein F 79.4 16 0.00056 38.0 12.7 16 263-278 105-120 (306)
202 2l82_A Designed protein OR32; 79.0 11 0.00038 32.3 8.9 51 473-523 5-55 (162)
203 3lda_A DNA repair protein RAD5 79.0 16 0.00056 39.6 12.9 25 255-279 166-195 (400)
204 3i32_A Heat resistant RNA depe 78.4 3.6 0.00012 42.9 7.2 71 298-378 28-102 (300)
205 2pl3_A Probable ATP-dependent 78.4 6 0.0002 39.1 8.6 70 470-544 97-177 (236)
206 2i4i_A ATP-dependent RNA helic 78.3 7.6 0.00026 41.8 10.2 72 297-378 275-350 (417)
207 3sqw_A ATP-dependent RNA helic 77.5 15 0.00051 41.9 12.8 78 297-381 287-368 (579)
208 2gxq_A Heat resistant RNA depe 77.3 9.1 0.00031 36.6 9.4 71 470-544 72-150 (207)
209 1qde_A EIF4A, translation init 77.3 7.2 0.00025 38.0 8.8 93 447-544 55-161 (224)
210 2z43_A DNA repair and recombin 76.2 7.2 0.00025 41.0 8.9 18 262-279 107-124 (324)
211 1nlf_A Regulatory protein REPA 76.2 7.3 0.00025 39.8 8.8 22 259-280 27-48 (279)
212 1gku_B Reverse gyrase, TOP-RG; 76.0 4.1 0.00014 50.3 7.8 74 469-544 98-181 (1054)
213 3iuy_A Probable ATP-dependent 75.8 4.4 0.00015 39.8 6.8 72 469-544 93-173 (228)
214 2ehv_A Hypothetical protein PH 75.7 1.6 5.5E-05 43.5 3.5 43 371-413 134-181 (251)
215 1q0u_A Bstdead; DEAD protein, 74.5 3.7 0.00013 40.2 5.8 72 469-544 71-156 (219)
216 3cmu_A Protein RECA, recombina 74.4 2.7 9.1E-05 54.8 5.7 44 256-307 1415-1464(2050)
217 1wp9_A ATP-dependent RNA helic 74.3 7.3 0.00025 42.4 8.7 92 448-544 28-131 (494)
218 3m6a_A ATP-dependent protease 74.2 3.3 0.00011 47.1 6.0 26 261-288 107-132 (543)
219 2cvh_A DNA repair and recombin 74.1 17 0.00059 34.9 10.6 18 262-279 20-37 (220)
220 3pey_A ATP-dependent RNA helic 73.3 14 0.00048 39.0 10.5 76 297-382 242-321 (395)
221 1r6b_X CLPA protein; AAA+, N-t 73.2 8.1 0.00028 45.7 9.3 17 262-278 207-223 (758)
222 2ffh_A Protein (FFH); SRP54, s 73.1 19 0.00066 39.4 11.5 17 262-278 98-114 (425)
223 3fht_A ATP-dependent RNA helic 73.0 8.5 0.00029 41.2 8.7 71 298-378 266-340 (412)
224 2d7d_A Uvrabc system protein B 72.7 27 0.00091 40.6 13.3 78 297-384 444-525 (661)
225 1wrb_A DJVLGB; RNA helicase, D 72.3 23 0.00078 35.2 11.3 71 470-544 100-180 (253)
226 3cf2_A TER ATPase, transitiona 71.5 3.6 0.00012 48.9 5.6 54 222-278 471-527 (806)
227 2yhs_A FTSY, cell division pro 71.4 11 0.00038 42.1 9.1 23 264-288 295-317 (503)
228 3bh0_A DNAB-like replicative h 71.4 7 0.00024 40.9 7.3 50 261-319 67-116 (315)
229 2zts_A Putative uncharacterize 71.3 3.4 0.00012 41.0 4.6 18 262-279 30-47 (251)
230 3n70_A Transport activator; si 70.1 2.9 9.8E-05 38.3 3.5 19 260-278 22-40 (145)
231 3ly5_A ATP-dependent RNA helic 70.1 19 0.00064 36.3 10.0 71 470-544 126-207 (262)
232 2j37_W Signal recognition part 70.1 25 0.00085 39.4 11.7 15 264-278 103-117 (504)
233 1c4o_A DNA nucleotide excision 68.9 77 0.0026 36.7 16.1 77 297-383 438-518 (664)
234 1fuu_A Yeast initiation factor 68.7 16 0.00055 38.6 9.7 92 448-544 63-168 (394)
235 1hv8_A Putative ATP-dependent 68.7 9.8 0.00034 39.8 7.8 74 297-380 237-314 (367)
236 2yjt_D ATP-dependent RNA helic 71.7 1 3.5E-05 42.6 0.0 72 298-379 30-105 (170)
237 4b4t_M 26S protease regulatory 67.9 2.2 7.6E-05 47.0 2.5 55 221-278 174-231 (434)
238 2j0s_A ATP-dependent RNA helic 67.5 21 0.00073 38.1 10.4 94 447-544 78-185 (410)
239 3bgw_A DNAB-like replicative h 67.2 4.3 0.00015 44.9 4.7 37 262-306 197-233 (444)
240 1s2m_A Putative ATP-dependent 67.0 19 0.00065 38.3 9.8 93 448-544 63-169 (400)
241 1e9r_A Conjugal transfer prote 66.9 4.4 0.00015 44.5 4.8 43 262-312 53-95 (437)
242 3gk5_A Uncharacterized rhodane 66.3 4.7 0.00016 34.9 3.9 47 459-505 44-90 (108)
243 3cf2_A TER ATPase, transitiona 65.8 6.5 0.00022 46.7 6.1 16 263-278 239-254 (806)
244 3dkp_A Probable ATP-dependent 65.2 5.6 0.00019 39.6 4.7 72 470-544 98-181 (245)
245 1ypw_A Transitional endoplasmi 65.0 15 0.00052 43.8 9.2 18 261-278 237-254 (806)
246 2l8b_A Protein TRAI, DNA helic 64.9 4.4 0.00015 39.0 3.5 121 248-412 35-158 (189)
247 3eiq_A Eukaryotic initiation f 64.8 26 0.00091 37.3 10.5 94 448-544 82-189 (414)
248 2db3_A ATP-dependent RNA helic 64.6 15 0.0005 40.2 8.4 68 301-378 303-374 (434)
249 4a2p_A RIG-I, retinoic acid in 64.5 6.9 0.00023 43.9 5.9 71 470-544 55-136 (556)
250 2eyu_A Twitching motility prot 64.2 3.1 0.00011 42.5 2.6 20 259-278 22-41 (261)
251 3jvv_A Twitching mobility prot 64.0 6.1 0.00021 42.3 5.0 18 261-278 122-139 (356)
252 2i1q_A DNA repair and recombin 63.4 18 0.00061 37.7 8.5 25 255-279 86-115 (322)
253 3fmo_B ATP-dependent RNA helic 62.0 11 0.00039 38.9 6.6 108 470-588 162-286 (300)
254 3tbk_A RIG-I helicase domain; 61.6 5.2 0.00018 44.8 4.1 71 470-544 52-133 (555)
255 4a2q_A RIG-I, retinoic acid in 61.4 8.2 0.00028 46.0 6.0 71 470-544 296-377 (797)
256 1v5w_A DMC1, meiotic recombina 60.6 17 0.00057 38.5 7.7 50 256-307 111-165 (343)
257 3flh_A Uncharacterized protein 60.6 7.1 0.00024 34.6 4.0 46 460-505 61-108 (124)
258 3cmu_A Protein RECA, recombina 59.9 9.7 0.00033 49.7 6.5 46 261-315 1080-1125(2050)
259 2xxa_A Signal recognition part 59.3 27 0.00091 38.3 9.2 18 263-280 101-118 (433)
260 1pzn_A RAD51, DNA repair and r 58.5 25 0.00087 37.2 8.7 24 255-278 119-147 (349)
261 1wv9_A Rhodanese homolog TT165 58.3 8.8 0.0003 32.0 4.0 43 462-505 46-88 (94)
262 1p9r_A General secretion pathw 58.1 13 0.00044 40.7 6.4 25 262-287 167-191 (418)
263 4b4t_L 26S protease subunit RP 57.3 21 0.00073 39.2 7.9 54 222-278 175-231 (437)
264 2z0m_A 337AA long hypothetical 57.2 26 0.00087 36.0 8.4 91 447-544 35-135 (337)
265 1j8m_F SRP54, signal recogniti 57.0 48 0.0016 34.2 10.3 17 262-278 98-114 (297)
266 3u4q_B ATP-dependent helicase/ 56.8 22 0.00075 44.3 8.9 38 266-308 5-42 (1166)
267 1yks_A Genome polyprotein [con 56.3 11 0.00039 41.3 5.6 68 298-377 177-245 (440)
268 3b85_A Phosphate starvation-in 56.1 12 0.00041 36.6 5.2 31 248-278 8-38 (208)
269 2oca_A DAR protein, ATP-depend 55.7 1.1E+02 0.0039 33.5 14.0 75 299-382 348-426 (510)
270 2v6i_A RNA helicase; membrane, 54.9 13 0.00045 40.6 5.8 53 298-355 171-224 (431)
271 3foj_A Uncharacterized protein 54.1 4.7 0.00016 34.2 1.6 37 469-505 55-91 (100)
272 1tf7_A KAIC; homohexamer, hexa 54.1 43 0.0015 37.6 10.1 125 261-413 280-417 (525)
273 3g5j_A Putative ATP/GTP bindin 53.6 5.3 0.00018 35.5 2.0 38 469-506 87-126 (134)
274 3eme_A Rhodanese-like domain p 53.5 5.6 0.00019 33.9 2.0 37 469-505 55-91 (103)
275 1lv7_A FTSH; alpha/beta domain 53.4 17 0.00057 36.4 5.9 16 263-278 46-61 (257)
276 3iwh_A Rhodanese-like domain p 53.4 5.3 0.00018 34.4 1.8 40 466-505 52-91 (103)
277 2xau_A PRE-mRNA-splicing facto 53.1 26 0.00089 41.5 8.3 75 298-378 303-393 (773)
278 3cmw_A Protein RECA, recombina 52.7 8.3 0.00028 49.6 4.1 44 262-313 1431-1474(1706)
279 4akg_A Glutathione S-transfera 52.7 15 0.00052 49.5 6.7 48 232-280 890-941 (2695)
280 4a2w_A RIG-I, retinoic acid in 52.7 16 0.00055 44.4 6.6 71 470-544 296-377 (936)
281 3o8b_A HCV NS3 protease/helica 52.5 12 0.00041 43.5 5.1 67 297-377 395-461 (666)
282 1tf5_A Preprotein translocase 52.5 32 0.0011 40.8 8.8 70 469-544 123-209 (844)
283 3dmn_A Putative DNA helicase; 52.2 34 0.0012 32.1 7.6 80 455-549 45-125 (174)
284 4ag6_A VIRB4 ATPase, type IV s 51.1 15 0.0005 39.6 5.4 42 261-310 34-75 (392)
285 2oap_1 GSPE-2, type II secreti 50.2 13 0.00046 41.7 4.9 39 238-278 237-276 (511)
286 2bjv_A PSP operon transcriptio 49.9 19 0.00066 36.1 5.7 18 261-278 28-45 (265)
287 3nbx_X ATPase RAVA; AAA+ ATPas 49.9 17 0.00059 40.7 5.8 26 253-278 32-57 (500)
288 1u0j_A DNA replication protein 49.5 23 0.00077 36.2 6.1 43 234-279 73-121 (267)
289 2r44_A Uncharacterized protein 49.2 12 0.00039 39.2 4.0 23 256-278 40-62 (331)
290 4gl2_A Interferon-induced heli 49.2 5 0.00017 46.9 1.3 70 471-544 57-142 (699)
291 3b6e_A Interferon-induced heli 48.7 13 0.00044 35.7 4.0 55 470-528 82-140 (216)
292 1tue_A Replication protein E1; 48.4 24 0.00083 34.6 5.8 75 195-287 4-82 (212)
293 4f4c_A Multidrug resistance pr 48.2 17 0.00057 46.0 5.9 44 370-413 1233-1276(1321)
294 4b4t_I 26S protease regulatory 48.1 23 0.00077 38.8 6.1 54 222-278 176-232 (437)
295 1gmx_A GLPE protein; transfera 48.1 12 0.00039 32.2 3.2 38 469-506 57-95 (108)
296 3hws_A ATP-dependent CLP prote 47.8 27 0.00093 36.9 6.8 25 261-287 50-74 (363)
297 1ofh_A ATP-dependent HSL prote 47.7 36 0.0012 34.6 7.6 17 262-278 50-66 (310)
298 3rc3_A ATP-dependent RNA helic 47.6 32 0.0011 40.1 7.7 74 300-384 322-401 (677)
299 3vaa_A Shikimate kinase, SK; s 47.1 10 0.00034 36.5 2.9 18 261-278 24-41 (199)
300 1tq1_A AT5G66040, senescence-a 46.9 18 0.00061 32.2 4.4 37 469-505 81-118 (129)
301 2gza_A Type IV secretion syste 45.9 12 0.00042 39.9 3.7 20 259-278 172-191 (361)
302 3b9p_A CG5977-PA, isoform A; A 45.8 23 0.0008 36.0 5.7 46 223-278 16-70 (297)
303 1kgd_A CASK, peripheral plasma 45.6 10 0.00034 35.9 2.6 18 261-278 4-21 (180)
304 2ykg_A Probable ATP-dependent 45.2 17 0.00057 42.3 5.0 70 471-544 62-142 (696)
305 1qhx_A CPT, protein (chloramph 44.7 8.5 0.00029 35.9 1.9 17 262-278 3-19 (178)
306 2wv9_A Flavivirin protease NS2 44.6 20 0.00068 41.8 5.4 68 298-377 410-478 (673)
307 2fwr_A DNA repair protein RAD2 44.2 17 0.00058 40.0 4.6 83 447-544 112-198 (472)
308 3a8t_A Adenylate isopentenyltr 44.0 11 0.00038 39.9 2.8 17 263-279 41-57 (339)
309 3iij_A Coilin-interacting nucl 43.8 8.3 0.00028 36.2 1.7 19 260-278 9-27 (180)
310 2fsf_A Preprotein translocase 43.7 26 0.0009 41.5 6.2 70 469-544 114-200 (853)
311 3trf_A Shikimate kinase, SK; a 43.5 12 0.00042 35.1 2.9 18 262-279 5-22 (185)
312 1w36_B RECB, exodeoxyribonucle 43.3 36 0.0012 42.4 7.8 59 264-322 18-80 (1180)
313 1lvg_A Guanylate kinase, GMP k 42.8 14 0.00046 35.7 3.1 25 261-287 3-27 (198)
314 3lw7_A Adenylate kinase relate 42.7 10 0.00035 34.8 2.1 15 264-278 3-17 (179)
315 1kht_A Adenylate kinase; phosp 42.2 10 0.00036 35.6 2.2 17 262-278 3-19 (192)
316 1nkt_A Preprotein translocase 42.2 53 0.0018 39.3 8.4 69 470-544 152-237 (922)
317 2fsx_A RV0390, COG0607: rhodan 41.7 37 0.0013 30.8 5.8 37 469-505 79-116 (148)
318 1kag_A SKI, shikimate kinase I 41.3 16 0.00055 33.7 3.3 24 262-287 4-27 (173)
319 3l9o_A ATP-dependent RNA helic 41.3 17 0.00056 45.1 4.2 65 469-544 226-296 (1108)
320 3mm4_A Histidine kinase homolo 40.8 2.3E+02 0.008 26.6 12.0 127 260-413 18-161 (206)
321 1ojl_A Transcriptional regulat 40.5 27 0.00092 36.1 5.2 18 261-278 24-41 (304)
322 3tau_A Guanylate kinase, GMP k 40.4 15 0.0005 35.7 2.9 18 261-278 7-24 (208)
323 2ze6_A Isopentenyl transferase 40.2 14 0.00048 37.2 2.8 14 265-278 4-17 (253)
324 2qmh_A HPR kinase/phosphorylas 40.1 13 0.00044 36.3 2.4 18 261-278 33-50 (205)
325 1ixz_A ATP-dependent metallopr 40.0 43 0.0015 33.2 6.5 59 222-287 10-72 (254)
326 2j41_A Guanylate kinase; GMP, 39.9 14 0.00046 35.4 2.6 19 260-278 4-22 (207)
327 2qor_A Guanylate kinase; phosp 39.4 13 0.00044 35.8 2.3 20 259-278 9-28 (204)
328 3foz_A TRNA delta(2)-isopenten 39.1 15 0.00051 38.5 2.8 16 264-279 12-27 (316)
329 1z5z_A Helicase of the SNF2/RA 39.0 87 0.003 31.7 8.7 95 270-381 92-192 (271)
330 1nij_A Hypothetical protein YJ 38.7 21 0.00071 37.3 4.0 14 265-278 7-20 (318)
331 2c9o_A RUVB-like 1; hexameric 38.6 31 0.001 38.0 5.5 16 263-278 64-79 (456)
332 3nwj_A ATSK2; P loop, shikimat 38.5 20 0.00067 36.2 3.6 27 258-286 44-70 (250)
333 2pt7_A CAG-ALFA; ATPase, prote 38.5 16 0.00056 38.4 3.1 20 259-278 168-187 (330)
334 3nzo_A UDP-N-acetylglucosamine 37.9 2.1E+02 0.0073 30.3 12.1 90 253-355 26-119 (399)
335 1qxn_A SUD, sulfide dehydrogen 37.9 25 0.00084 31.7 3.8 37 469-505 81-118 (137)
336 3cm0_A Adenylate kinase; ATP-b 37.9 12 0.00043 35.0 1.9 18 261-278 3-20 (186)
337 1y63_A LMAJ004144AAA protein; 37.7 17 0.00059 34.3 2.9 18 261-278 9-26 (184)
338 3exa_A TRNA delta(2)-isopenten 37.7 14 0.00049 38.7 2.4 15 264-278 5-19 (322)
339 3tr0_A Guanylate kinase, GMP k 37.6 15 0.00053 34.9 2.6 25 261-287 6-30 (205)
340 3nhv_A BH2092 protein; alpha-b 37.6 20 0.00068 32.7 3.2 37 469-505 71-109 (144)
341 1zp6_A Hypothetical protein AT 37.4 15 0.0005 34.7 2.3 18 261-278 8-25 (191)
342 3nwn_A Kinesin-like protein KI 37.1 23 0.00077 37.9 3.9 24 255-278 96-121 (359)
343 2jlq_A Serine protease subunit 37.0 23 0.0008 38.9 4.2 68 298-377 188-256 (451)
344 2ewv_A Twitching motility prot 36.9 16 0.00056 39.1 2.9 19 260-278 134-152 (372)
345 2fz4_A DNA repair protein RAD2 36.9 39 0.0013 33.4 5.5 65 448-527 113-178 (237)
346 1ly1_A Polynucleotide kinase; 36.6 15 0.0005 34.2 2.1 15 264-278 4-18 (181)
347 2zr9_A Protein RECA, recombina 36.1 27 0.00092 37.1 4.4 25 262-287 61-85 (349)
348 2ipc_A Preprotein translocase 36.1 64 0.0022 38.7 7.7 54 469-528 119-176 (997)
349 3vkg_A Dynein heavy chain, cyt 36.1 32 0.0011 47.0 5.9 54 232-288 873-930 (3245)
350 3ney_A 55 kDa erythrocyte memb 36.0 17 0.00059 35.2 2.6 19 260-278 17-35 (197)
351 2r8r_A Sensor protein; KDPD, P 35.9 28 0.00096 34.6 4.1 17 264-280 8-24 (228)
352 3ipz_A Monothiol glutaredoxin- 35.9 54 0.0018 28.0 5.6 52 463-514 10-67 (109)
353 1u94_A RECA protein, recombina 35.7 28 0.00096 37.1 4.4 37 262-306 63-99 (356)
354 1bg2_A Kinesin; motor protein, 35.7 25 0.00086 36.9 4.0 24 255-278 69-94 (325)
355 3uk6_A RUVB-like 2; hexameric 35.7 17 0.00059 38.3 2.8 16 263-278 71-86 (368)
356 3p32_A Probable GTPase RV1496/ 35.6 1.9E+02 0.0066 30.2 11.1 15 264-278 81-95 (355)
357 1z6g_A Guanylate kinase; struc 35.2 22 0.00076 34.7 3.3 27 259-287 20-46 (218)
358 2whx_A Serine protease/ntpase/ 34.9 42 0.0014 38.6 6.0 68 298-377 355-423 (618)
359 4etp_A Kinesin-like protein KA 34.8 27 0.00092 37.9 4.1 24 255-278 132-157 (403)
360 3crm_A TRNA delta(2)-isopenten 34.7 19 0.00065 37.9 2.8 15 264-278 7-21 (323)
361 3kb2_A SPBC2 prophage-derived 34.7 20 0.00069 32.9 2.8 15 264-278 3-17 (173)
362 3hr8_A Protein RECA; alpha and 34.7 27 0.00092 37.2 4.1 38 262-307 61-98 (356)
363 3dc4_A Kinesin-like protein NO 34.7 25 0.00084 37.4 3.7 24 255-278 86-111 (344)
364 3zyw_A Glutaredoxin-3; metal b 34.7 54 0.0018 28.3 5.4 48 467-514 12-65 (111)
365 2r2a_A Uncharacterized protein 34.6 29 0.001 33.6 4.0 17 264-280 7-23 (199)
366 3hix_A ALR3790 protein; rhodan 34.5 21 0.00072 30.4 2.7 37 469-505 51-88 (106)
367 2ius_A DNA translocase FTSK; n 34.3 40 0.0014 37.7 5.6 26 261-287 166-191 (512)
368 3a00_A Guanylate kinase, GMP k 34.1 23 0.0008 33.4 3.2 23 263-287 2-24 (186)
369 1v8k_A Kinesin-like protein KI 33.7 26 0.00088 38.1 3.7 24 255-278 146-171 (410)
370 2va8_A SSO2462, SKI2-type heli 33.7 78 0.0027 36.8 8.2 76 298-379 252-363 (715)
371 2h58_A Kinesin-like protein KI 33.6 28 0.00097 36.6 4.0 24 255-278 72-97 (330)
372 1ex7_A Guanylate kinase; subst 33.6 19 0.00065 34.6 2.4 16 263-278 2-17 (186)
373 2zfi_A Kinesin-like protein KI 33.5 25 0.00087 37.6 3.6 24 255-278 81-106 (366)
374 4eun_A Thermoresistant glucoki 33.3 22 0.00077 33.9 2.9 18 261-278 28-45 (200)
375 2vvg_A Kinesin-2; motor protei 33.2 29 0.00099 36.9 4.0 24 255-278 81-106 (350)
376 2y65_A Kinesin, kinesin heavy 33.2 29 0.00099 37.1 4.0 24 255-278 76-101 (365)
377 2nr8_A Kinesin-like protein KI 33.1 29 0.00098 37.1 3.9 24 255-278 95-120 (358)
378 3h1t_A Type I site-specific re 33.0 80 0.0027 35.7 8.0 80 297-382 438-527 (590)
379 2c95_A Adenylate kinase 1; tra 33.0 24 0.00081 33.3 3.0 19 260-278 7-25 (196)
380 4a14_A Kinesin, kinesin-like p 33.0 29 0.001 36.8 4.0 24 255-278 75-100 (344)
381 2yan_A Glutaredoxin-3; oxidore 33.0 69 0.0023 26.9 5.8 56 469-524 15-76 (105)
382 1t5c_A CENP-E protein, centrom 32.9 29 0.00099 36.9 3.9 24 255-278 69-94 (349)
383 3b6u_A Kinesin-like protein KI 32.9 29 0.00099 37.2 3.9 24 255-278 93-118 (372)
384 2wbe_C Bipolar kinesin KRP-130 32.6 25 0.00085 37.8 3.4 24 255-278 92-117 (373)
385 1rj9_A FTSY, signal recognitio 32.4 35 0.0012 35.4 4.4 26 262-289 102-127 (304)
386 3gbj_A KIF13B protein; kinesin 32.4 30 0.001 36.9 3.9 24 255-278 84-109 (354)
387 1znw_A Guanylate kinase, GMP k 32.3 24 0.00082 34.0 3.0 29 258-288 16-44 (207)
388 3kta_A Chromosome segregation 32.3 26 0.00089 32.7 3.2 23 264-288 28-50 (182)
389 3ukw_C Bimax1 peptide; arm rep 32.2 18 0.00061 22.3 1.2 12 777-788 4-15 (28)
390 4gp7_A Metallophosphoesterase; 32.1 16 0.00056 34.1 1.7 18 261-278 8-25 (171)
391 2r2a_A Uncharacterized protein 32.1 26 0.0009 33.9 3.2 40 373-412 88-132 (199)
392 4a74_A DNA repair and recombin 32.1 44 0.0015 32.2 4.9 18 261-278 24-41 (231)
393 3d3q_A TRNA delta(2)-isopenten 31.9 23 0.00077 37.6 2.8 16 264-279 9-24 (340)
394 2rhm_A Putative kinase; P-loop 31.8 19 0.00065 33.9 2.1 16 263-278 6-21 (193)
395 3dmq_A RNA polymerase-associat 31.8 74 0.0025 38.7 7.8 77 297-382 502-584 (968)
396 1goj_A Kinesin, kinesin heavy 31.7 29 0.00099 37.0 3.7 24 255-278 72-97 (355)
397 1f2t_A RAD50 ABC-ATPase; DNA d 31.5 29 0.00099 31.7 3.2 22 265-288 26-47 (149)
398 1x88_A Kinesin-like protein KI 31.5 28 0.00096 37.1 3.5 24 255-278 80-105 (359)
399 2jtq_A Phage shock protein E; 31.3 29 0.00098 28.1 2.9 36 469-505 40-76 (85)
400 3lre_A Kinesin-like protein KI 31.3 29 0.001 36.9 3.6 24 255-278 97-122 (355)
401 3ice_A Transcription terminati 31.2 1.7E+02 0.0057 31.7 9.4 31 248-278 157-190 (422)
402 1um8_A ATP-dependent CLP prote 31.2 26 0.0009 37.2 3.3 17 262-278 72-88 (376)
403 1knq_A Gluconate kinase; ALFA/ 31.2 22 0.00074 33.0 2.4 17 262-278 8-24 (175)
404 1tev_A UMP-CMP kinase; ploop, 31.1 22 0.00074 33.4 2.4 18 262-279 3-20 (196)
405 2v54_A DTMP kinase, thymidylat 31.0 19 0.00065 34.2 2.0 18 261-278 3-20 (204)
406 1ak2_A Adenylate kinase isoenz 30.9 23 0.00078 34.9 2.6 19 261-279 15-33 (233)
407 2bwj_A Adenylate kinase 5; pho 30.7 27 0.00092 32.9 3.0 18 261-278 11-28 (199)
408 3fmp_B ATP-dependent RNA helic 30.6 1.2E+02 0.004 33.1 8.7 67 471-544 163-241 (479)
409 3t61_A Gluconokinase; PSI-biol 30.5 26 0.00087 33.5 2.8 16 263-278 19-34 (202)
410 1zuh_A Shikimate kinase; alpha 30.5 26 0.00088 32.3 2.7 17 263-279 8-24 (168)
411 1xp8_A RECA protein, recombina 30.4 38 0.0013 36.2 4.4 37 262-306 74-110 (366)
412 3u06_A Protein claret segregat 30.4 31 0.001 37.6 3.6 25 254-278 129-155 (412)
413 3mwy_W Chromo domain-containin 30.3 3.3E+02 0.011 31.9 13.1 77 297-382 571-653 (800)
414 2heh_A KIF2C protein; kinesin, 30.2 31 0.0011 37.2 3.6 24 255-278 126-151 (387)
415 3t0q_A AGR253WP; kinesin, alph 30.1 25 0.00084 37.4 2.8 24 255-278 77-102 (349)
416 1s96_A Guanylate kinase, GMP k 30.1 27 0.00092 34.3 2.9 27 259-287 13-39 (219)
417 2bdt_A BH3686; alpha-beta prot 30.0 27 0.00092 32.9 2.8 15 264-278 4-18 (189)
418 4f4c_A Multidrug resistance pr 29.9 36 0.0012 43.0 4.6 43 370-412 570-612 (1321)
419 1f9v_A Kinesin-like protein KA 29.9 25 0.00085 37.4 2.7 24 255-278 76-101 (347)
420 2owm_A Nckin3-434, related to 29.8 31 0.0011 37.9 3.6 24 255-278 128-153 (443)
421 1via_A Shikimate kinase; struc 29.8 30 0.001 32.1 3.1 16 263-278 5-20 (175)
422 3cob_A Kinesin heavy chain-lik 29.8 28 0.00097 37.2 3.2 24 255-278 71-96 (369)
423 1g8p_A Magnesium-chelatase 38 29.6 29 0.00099 36.1 3.3 18 261-278 44-61 (350)
424 1xjc_A MOBB protein homolog; s 29.5 49 0.0017 31.1 4.5 23 264-287 6-28 (169)
425 2plr_A DTMP kinase, probable t 29.5 22 0.00074 34.0 2.1 18 261-278 3-20 (213)
426 4fcw_A Chaperone protein CLPB; 29.4 31 0.0011 35.2 3.4 16 263-278 48-63 (311)
427 3d8b_A Fidgetin-like protein 1 29.2 25 0.00085 37.3 2.7 17 262-278 117-133 (357)
428 3b9q_A Chloroplast SRP recepto 29.1 34 0.0012 35.5 3.6 26 261-288 99-124 (302)
429 3eph_A TRNA isopentenyltransfe 29.0 26 0.00088 38.1 2.7 14 265-278 5-18 (409)
430 2zj8_A DNA helicase, putative 29.0 1E+02 0.0035 35.8 8.2 77 298-381 237-346 (720)
431 1vee_A Proline-rich protein fa 29.0 44 0.0015 29.7 3.9 37 469-505 73-110 (134)
432 3sr0_A Adenylate kinase; phosp 28.9 29 0.00098 33.8 2.8 17 264-280 2-18 (206)
433 1m7g_A Adenylylsulfate kinase; 28.7 35 0.0012 32.8 3.5 29 249-278 13-41 (211)
434 3uie_A Adenylyl-sulfate kinase 28.7 26 0.00088 33.5 2.4 18 261-278 24-41 (200)
435 2hhg_A Hypothetical protein RP 28.7 27 0.00092 31.2 2.4 37 469-505 85-122 (139)
436 1nks_A Adenylate kinase; therm 28.6 29 0.00098 32.4 2.7 15 264-278 3-17 (194)
437 1zak_A Adenylate kinase; ATP:A 28.4 33 0.0011 33.3 3.2 17 263-279 6-22 (222)
438 2p6r_A Afuhel308 helicase; pro 28.4 31 0.0011 40.2 3.6 90 448-544 45-144 (702)
439 1jr3_D DNA polymerase III, del 28.3 4.5E+02 0.015 26.8 12.5 55 357-413 62-117 (343)
440 3bfn_A Kinesin-like protein KI 28.1 26 0.00089 37.8 2.5 23 256-278 91-115 (388)
441 1in4_A RUVB, holliday junction 28.0 31 0.0011 36.1 3.1 16 263-278 52-67 (334)
442 1aky_A Adenylate kinase; ATP:A 28.0 31 0.0011 33.4 3.0 18 262-279 4-21 (220)
443 1zd8_A GTP:AMP phosphotransfer 27.9 30 0.001 33.8 2.8 17 262-278 7-23 (227)
444 1iy2_A ATP-dependent metallopr 27.9 33 0.0011 34.7 3.3 23 263-287 74-96 (278)
445 2z83_A Helicase/nucleoside tri 27.8 31 0.0011 38.0 3.2 53 298-355 190-243 (459)
446 1gvn_B Zeta; postsegregational 27.6 23 0.00079 36.4 2.0 16 263-278 34-49 (287)
447 2k0z_A Uncharacterized protein 27.6 47 0.0016 28.4 3.7 37 469-505 55-91 (110)
448 1qf9_A UMP/CMP kinase, protein 27.6 31 0.0011 32.2 2.8 15 264-278 8-22 (194)
449 3czc_A RMPB; alpha/beta sandwi 27.5 86 0.003 26.9 5.4 57 298-357 18-76 (110)
450 2iut_A DNA translocase FTSK; n 27.5 60 0.0021 36.8 5.5 26 262-288 214-239 (574)
451 4a4z_A Antiviral helicase SKI2 27.2 87 0.003 38.2 7.3 65 469-544 81-153 (997)
452 3c8u_A Fructokinase; YP_612366 27.1 31 0.0011 33.2 2.7 25 262-288 22-46 (208)
453 2r62_A Cell division protease 27.1 17 0.00058 36.5 0.8 17 262-278 44-60 (268)
454 3fb4_A Adenylate kinase; psych 26.9 32 0.0011 33.0 2.8 16 264-279 2-17 (216)
455 1ye8_A Protein THEP1, hypothet 26.8 32 0.0011 32.5 2.7 23 264-288 2-24 (178)
456 1e6c_A Shikimate kinase; phosp 26.8 37 0.0013 31.2 3.1 16 263-278 3-18 (173)
457 2iyv_A Shikimate kinase, SK; t 26.7 39 0.0013 31.5 3.3 16 263-278 3-18 (184)
458 3umf_A Adenylate kinase; rossm 26.6 33 0.0011 33.8 2.8 18 263-280 30-47 (217)
459 3ilm_A ALR3790 protein; rhodan 26.5 38 0.0013 30.6 3.1 37 469-505 55-92 (141)
460 2vli_A Antibiotic resistance p 26.5 24 0.00083 32.8 1.8 17 262-278 5-21 (183)
461 2i3b_A HCR-ntpase, human cance 26.4 44 0.0015 31.9 3.6 41 370-413 103-145 (189)
462 3k1j_A LON protease, ATP-depen 26.3 49 0.0017 37.8 4.7 30 257-288 55-84 (604)
463 1ry6_A Internal kinesin; kines 26.3 39 0.0013 36.0 3.5 18 261-278 82-101 (360)
464 2jaq_A Deoxyguanosine kinase; 26.2 34 0.0012 32.3 2.8 15 264-278 2-16 (205)
465 1wik_A Thioredoxin-like protei 26.1 96 0.0033 26.2 5.5 47 470-516 14-66 (109)
466 3dl0_A Adenylate kinase; phosp 26.0 34 0.0012 32.9 2.8 15 264-278 2-16 (216)
467 1sky_E F1-ATPase, F1-ATP synth 26.0 77 0.0026 35.0 5.9 20 259-278 148-167 (473)
468 2og2_A Putative signal recogni 25.8 46 0.0016 35.4 4.0 25 262-288 157-181 (359)
469 2cdn_A Adenylate kinase; phosp 25.8 35 0.0012 32.4 2.8 16 263-278 21-36 (201)
470 3fho_A ATP-dependent RNA helic 25.7 1.4E+02 0.0048 33.0 8.2 90 447-544 162-265 (508)
471 3qiv_A Short-chain dehydrogena 25.6 3.1E+02 0.011 26.5 10.1 81 260-357 7-95 (253)
472 2yvu_A Probable adenylyl-sulfa 25.5 32 0.0011 32.3 2.4 17 262-278 13-29 (186)
473 3lnc_A Guanylate kinase, GMP k 25.4 27 0.00093 34.2 2.0 18 261-278 26-43 (231)
474 3qf7_A RAD50; ABC-ATPase, ATPa 25.2 37 0.0013 36.1 3.2 16 264-279 25-40 (365)
475 1zu4_A FTSY; GTPase, signal re 25.1 55 0.0019 34.2 4.4 17 262-278 105-121 (320)
476 2pez_A Bifunctional 3'-phospho 25.1 33 0.0011 31.9 2.4 18 261-278 4-21 (179)
477 2rep_A Kinesin-like protein KI 24.9 37 0.0013 36.4 3.0 24 255-278 107-132 (376)
478 3pgw_S U1-70K; protein-RNA com 24.8 1.1E+02 0.0037 33.5 6.8 12 409-420 1-12 (437)
479 2zan_A Vacuolar protein sortin 24.8 33 0.0011 37.6 2.7 53 223-278 129-183 (444)
480 1ukz_A Uridylate kinase; trans 24.8 38 0.0013 32.2 2.8 15 264-278 17-31 (203)
481 3gx8_A Monothiol glutaredoxin- 24.8 1.2E+02 0.0041 26.4 6.0 48 466-513 11-67 (121)
482 3fkq_A NTRC-like two-domain pr 24.7 66 0.0023 34.2 5.0 26 355-381 243-268 (373)
483 3e4c_A Caspase-1; zymogen, inf 24.7 71 0.0024 33.1 5.0 47 471-518 61-118 (302)
484 2xgj_A ATP-dependent RNA helic 24.6 67 0.0023 39.3 5.6 87 447-544 105-198 (1010)
485 3qks_A DNA double-strand break 24.5 44 0.0015 32.2 3.2 24 264-289 25-48 (203)
486 1cke_A CK, MSSA, protein (cyti 24.5 38 0.0013 32.7 2.8 16 263-278 6-21 (227)
487 3be4_A Adenylate kinase; malar 24.4 39 0.0013 32.7 2.9 16 263-278 6-21 (217)
488 3auy_A DNA double-strand break 24.3 40 0.0014 35.9 3.2 20 265-286 28-47 (371)
489 3pxg_A Negative regulator of g 24.2 46 0.0016 36.7 3.7 17 262-278 201-217 (468)
490 2pt5_A Shikimate kinase, SK; a 24.1 40 0.0014 30.7 2.8 15 264-278 2-16 (168)
491 1e4v_A Adenylate kinase; trans 24.0 39 0.0013 32.6 2.8 15 264-278 2-16 (214)
492 2v9p_A Replication protein E1; 24.0 43 0.0015 34.8 3.3 26 261-288 125-150 (305)
493 2x8a_A Nuclear valosin-contain 23.9 38 0.0013 34.4 2.8 53 223-278 5-60 (274)
494 2wwf_A Thymidilate kinase, put 23.9 40 0.0014 32.1 2.9 18 261-278 9-26 (212)
495 2h54_A Caspase-1; allosteric s 23.8 1.1E+02 0.0037 29.0 5.8 48 470-518 43-101 (178)
496 3d1p_A Putative thiosulfate su 23.7 37 0.0013 30.3 2.4 37 469-505 90-127 (139)
497 2z0h_A DTMP kinase, thymidylat 23.7 33 0.0011 32.2 2.1 14 265-278 3-16 (197)
498 3cwq_A Para family chromosome 23.7 4.2E+02 0.014 25.0 10.4 86 265-359 4-103 (209)
499 2f1r_A Molybdopterin-guanine d 23.3 30 0.001 32.6 1.7 19 265-283 5-23 (171)
500 2if2_A Dephospho-COA kinase; a 23.3 41 0.0014 31.9 2.8 19 265-283 4-22 (204)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=7.4e-66 Score=583.59 Aligned_cols=391 Identities=41% Similarity=0.685 Sum_probs=361.4
Q ss_pred HcCcccccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhc
Q 003887 210 SLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMD 289 (789)
Q Consensus 210 ~~~i~v~~~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~ 289 (789)
...+.+.+.++|.|+.+|++++|++.++++|.+.||.+|||+|.++||.+++++|+|++++||||||++|++|++.+++.
T Consensus 41 ~~~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~ 120 (434)
T 2db3_A 41 NIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLE 120 (434)
T ss_dssp GSCEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CceeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHh
Confidence 34677889999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhcccc
Q 003887 290 QPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALT 369 (789)
Q Consensus 290 ~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~ 369 (789)
.+......++++|||+|||+||.||++++++++...++++.+++||.....+...+..+++|+|+||++|.+++.+....
T Consensus 121 ~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~ 200 (434)
T 2db3_A 121 DPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFIT 200 (434)
T ss_dssp SCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCC
T ss_pred cccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcc
Confidence 65433455789999999999999999999999988889999999999999888888899999999999999999988888
Q ss_pred ccceeEEEEcccchhccCCChHHHHHHHhhc--CCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEE
Q 003887 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQI--RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVV 447 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~f~~~i~~il~~~--~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~ 447 (789)
+.++++|||||||+|++++|...+..++..+ ++.+|+++||||+|+.+..++..++.++..+.++........+.+.+
T Consensus 201 l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~ 280 (434)
T 2db3_A 201 FEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTI 280 (434)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEE
T ss_pred cccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEE
Confidence 9999999999999999999999999999875 67899999999999999999999999999999888777788888888
Q ss_pred EecCCCcchHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEee
Q 003887 448 HVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT 527 (789)
Q Consensus 448 ~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT 527 (789)
..+. ...|...|+++|... ..++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||
T Consensus 281 ~~~~-~~~k~~~l~~~l~~~--~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT 357 (434)
T 2db3_A 281 YEVN-KYAKRSKLIEILSEQ--ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIAT 357 (434)
T ss_dssp EECC-GGGHHHHHHHHHHHC--CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEEC
T ss_pred EEeC-cHHHHHHHHHHHHhC--CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEc
Confidence 7764 456788888887754 3459999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEcc-ccHHHHHHHHHHHHHcCCCccHHHHHH
Q 003887 528 DVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ-KEARFAGELVNSLIAAGQNVSMELMDL 604 (789)
Q Consensus 528 ~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~-~d~~~~~~l~~~L~~~~~~vp~~l~~~ 604 (789)
+++++|||+|++++||+||+|+++..|+||+||+||.| +.|.|++|+++ ++..++.++++.|..+++.||++|.++
T Consensus 358 ~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g-~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~ 434 (434)
T 2db3_A 358 SVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVG-NNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRTC 434 (434)
T ss_dssp GGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTT-CCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC--
T ss_pred hhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCC-CCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHhC
Confidence 99999999999999999999999999999999999999 68999999995 578899999999999999999998653
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.9e-59 Score=522.72 Aligned_cols=393 Identities=41% Similarity=0.698 Sum_probs=354.6
Q ss_pred cccccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcc
Q 003887 213 IRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPE 292 (789)
Q Consensus 213 i~v~~~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~ 292 (789)
+.+.+..+|+++.+|++++|++.+++.|...||..|+|+|.++|+.++.++|+|+++|||+|||++|++|++.+++....
T Consensus 3 ~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~ 82 (417)
T 2i4i_A 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGP 82 (417)
T ss_dssp EEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCC
T ss_pred cccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccc
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999998865421
Q ss_pred c-------------ccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHH
Q 003887 293 L-------------QKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL 359 (789)
Q Consensus 293 ~-------------~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L 359 (789)
. ....++++|||+||++||.|+++.+++++...++++..++|+.....+...+..+++|+|+||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l 162 (417)
T 2i4i_A 83 GEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRL 162 (417)
T ss_dssp CHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHH
T ss_pred cchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHH
Confidence 1 112357899999999999999999999998888999999999999888888888999999999999
Q ss_pred HHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhc--CC--CceEEEEeccCcHHHHHHHHHHhCCCeEEeecc
Q 003887 360 IDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI--RP--DRQTLLFSATMPRKVEKLAREILSDPVRVTVGE 435 (789)
Q Consensus 360 ~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~--~~--~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~ 435 (789)
..++....+.+..+++|||||||++.+++|...+..++... ++ .+|+++||||+++.+..++..++.++..+.+..
T Consensus 163 ~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 242 (417)
T 2i4i_A 163 VDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 242 (417)
T ss_dssp HHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC-
T ss_pred HHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCC
Confidence 99998888889999999999999999999999999998753 32 689999999999999999999999998888877
Q ss_pred ccCccccceEEEEecCCCcchHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHH
Q 003887 436 VGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQK 515 (789)
Q Consensus 436 ~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~ 515 (789)
.......+.+.+..+. ...+...|.+++......+++||||+++..++.++..|...++.+..+||++++.+|..+++.
T Consensus 243 ~~~~~~~i~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~ 321 (417)
T 2i4i_A 243 VGSTSENITQKVVWVE-ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQ 321 (417)
T ss_dssp ---CCSSEEEEEEECC-GGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH
T ss_pred CCCCccCceEEEEEec-cHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHH
Confidence 7667777877777664 456788888888776567799999999999999999999999999999999999999999999
Q ss_pred hhcCCccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHHHHHHcCC
Q 003887 516 FKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQ 595 (789)
Q Consensus 516 F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~L~~~~~ 595 (789)
|++|+.+|||||+++++|+|+|++++||+|++|+++..|+||+||+||.| +.|.|++|+++.+...+..+++.|...++
T Consensus 322 f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 400 (417)
T 2i4i_A 322 FRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVG-NLGLATSFFNERNINITKDLLDLLVEAKQ 400 (417)
T ss_dssp HHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC---CCEEEEEEECGGGGGGHHHHHHHHHHTTC
T ss_pred HHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCC-CCceEEEEEccccHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999 67999999999999999999999999999
Q ss_pred CccHHHHHHHHh
Q 003887 596 NVSMELMDLAMK 607 (789)
Q Consensus 596 ~vp~~l~~~a~~ 607 (789)
.+|.+|.+++..
T Consensus 401 ~~~~~l~~~~~~ 412 (417)
T 2i4i_A 401 EVPSWLENMAYE 412 (417)
T ss_dssp CCCHHHHHHHTC
T ss_pred cCCHHHHHHHHh
Confidence 999999998864
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=3.9e-56 Score=499.14 Aligned_cols=372 Identities=31% Similarity=0.535 Sum_probs=339.7
Q ss_pred CCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCC
Q 003887 220 VPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGP 299 (789)
Q Consensus 220 ~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp 299 (789)
.+.+..+|++++|++.+++.|.+.||.+|+|+|.++++.+++++++|++++||+|||++|++|++.++... ..++
T Consensus 32 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~ 106 (410)
T 2j0s_A 32 EVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ-----VRET 106 (410)
T ss_dssp TCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT-----SCSC
T ss_pred CccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc-----cCCc
Confidence 34567789999999999999999999999999999999999999999999999999999999999876322 3467
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEc
Q 003887 300 IGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLD 379 (789)
Q Consensus 300 ~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlD 379 (789)
++|||+||++|+.||++.++++....++.+..++|+.....+...+..+++|+|+||++|.+++....+.+..+++||||
T Consensus 107 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViD 186 (410)
T 2j0s_A 107 QALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLD 186 (410)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEc
Confidence 89999999999999999999999888899999999999988888888899999999999999998888888999999999
Q ss_pred ccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHH
Q 003887 380 EADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPW 459 (789)
Q Consensus 380 Eah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~ 459 (789)
|||+|.+++|...+..++..+++..|+++||||+++.+..++..++.+|..+.+.........+.+.+..+.....+...
T Consensus 187 Eah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 266 (410)
T 2j0s_A 187 EADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDT 266 (410)
T ss_dssp THHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHH
T ss_pred cHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHH
Confidence 99999999999999999999999999999999999999888899999999888777777777888888887766667777
Q ss_pred HHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCc
Q 003887 460 LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSI 539 (789)
Q Consensus 460 L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v 539 (789)
|..++... ..+++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++
T Consensus 267 l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v 345 (410)
T 2j0s_A 267 LCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQV 345 (410)
T ss_dssp HHHHHHHH-TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTE
T ss_pred HHHHHHhc-CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccC
Confidence 77776543 45699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHHHHHHcCCCcc
Q 003887 540 KSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVS 598 (789)
Q Consensus 540 ~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~L~~~~~~vp 598 (789)
++||+||+|+++..|+||+||+||.| +.|.|++|+++.+...+.++.+.+...-..+|
T Consensus 346 ~~Vi~~~~p~s~~~~~Qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 403 (410)
T 2j0s_A 346 SLIINYDLPNNRELYIHRIGRSGRYG-RKGVAINFVKNDDIRILRDIEQYYSTQIDEMP 403 (410)
T ss_dssp EEEEESSCCSSHHHHHHHHTTSSGGG-CCEEEEEEEEGGGHHHHHHHHHHTTCCCEECC
T ss_pred CEEEEECCCCCHHHHHHhcccccCCC-CceEEEEEecHHHHHHHHHHHHHhCCCceecc
Confidence 99999999999999999999999999 67999999999999999888887765555554
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=4.4e-55 Score=490.44 Aligned_cols=380 Identities=31% Similarity=0.527 Sum_probs=331.7
Q ss_pred CCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCC
Q 003887 218 FDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEE 297 (789)
Q Consensus 218 ~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~ 297 (789)
...+..+.+|+++++++.+++.|.+.+|..|+|+|.++++.++.++++|++++||+|||++|++|++.++... ..
T Consensus 33 ~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~ 107 (414)
T 3eiq_A 33 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-----LK 107 (414)
T ss_dssp CCCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT-----SC
T ss_pred CCccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc-----CC
Confidence 3446677899999999999999999999999999999999999999999999999999999999999887442 24
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHh-cCCcEEEeCHHHHHHHHhhccccccceeEE
Q 003887 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK-AGCEIVIATPGRLIDMLKMKALTMSRVTYL 376 (789)
Q Consensus 298 gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~-~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~l 376 (789)
++++|||+||++|+.||++.+++++...++.+..++|+.....+...+. .+++|+|+||++|.+++....+.+..+++|
T Consensus 108 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~v 187 (414)
T 3eiq_A 108 ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMF 187 (414)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEE
T ss_pred ceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEE
Confidence 6779999999999999999999999888999999999998888777776 678999999999999998888888999999
Q ss_pred EEcccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcch
Q 003887 377 VLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEK 456 (789)
Q Consensus 377 VlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k 456 (789)
||||||++.+++|...+..++..+++..|+++||||+++.+..++..++.++..+.+.........+.+.+..+.....+
T Consensus 188 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (414)
T 3eiq_A 188 VLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWK 267 (414)
T ss_dssp EECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTH
T ss_pred EEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhH
Confidence 99999999999999999999999999999999999999999999999999999888877777777888888888777778
Q ss_pred HHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCC
Q 003887 457 LPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDI 536 (789)
Q Consensus 457 ~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI 536 (789)
...+..++... ..+++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|..+|||||+++++|+|+
T Consensus 268 ~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 346 (414)
T 3eiq_A 268 LDTLCDLYETL-TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDV 346 (414)
T ss_dssp HHHHHHHHHSS-CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCG
T ss_pred HHHHHHHHHhC-CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCc
Confidence 88888877654 45799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHHHHHHcCCCccHHHHHH
Q 003887 537 KSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDL 604 (789)
Q Consensus 537 ~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~L~~~~~~vp~~l~~~ 604 (789)
|++++||+|++|+++..|+||+||+||.| +.|.|++|+++.+...+..+.+.+......+|..+.++
T Consensus 347 p~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 413 (414)
T 3eiq_A 347 QQVSLVINYDLPTNRENYIHRIGRGGRFG-RKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADL 413 (414)
T ss_dssp GGCSCEEESSCCSSTHHHHHHSCCC--------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-----
T ss_pred cCCCEEEEeCCCCCHHHhhhhcCcccCCC-CCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhc
Confidence 99999999999999999999999999999 67999999999999999999999888888888776553
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=7.5e-53 Score=470.68 Aligned_cols=371 Identities=29% Similarity=0.500 Sum_probs=326.0
Q ss_pred CCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCE
Q 003887 221 PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPI 300 (789)
Q Consensus 221 P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~ 300 (789)
+.+..+|++++|++.+++.|.+.||.+|+|+|.++++.+++++++++++|||+|||++|++|++.++... ..+++
T Consensus 17 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~ 91 (400)
T 1s2m_A 17 NTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK-----LNKIQ 91 (400)
T ss_dssp ----CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SCSCC
T ss_pred ccccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc-----cCCcc
Confidence 3456789999999999999999999999999999999999999999999999999999999999886432 24668
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcc
Q 003887 301 GVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDE 380 (789)
Q Consensus 301 vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDE 380 (789)
+|||+||++|+.||++.+++++...++++..++|+.....+...+..+++|+|+||++|..++......+.++++|||||
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE 171 (400)
T 1s2m_A 92 ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDE 171 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEES
T ss_pred EEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeC
Confidence 99999999999999999999998888999999999988877777778899999999999999988777889999999999
Q ss_pred cchhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHH
Q 003887 381 ADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWL 460 (789)
Q Consensus 381 ah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L 460 (789)
||++.+.+|...+..++..+++..|+++||||++..+..++..++..|..+.+... .....+.+.+..+ ....|...+
T Consensus 172 aH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~k~~~l 249 (400)
T 1s2m_A 172 ADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE-LTLKGITQYYAFV-EERQKLHCL 249 (400)
T ss_dssp HHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS-CBCTTEEEEEEEC-CGGGHHHHH
T ss_pred chHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc-cccCCceeEEEEe-chhhHHHHH
Confidence 99999888888899999998889999999999999999999999998877655332 3344555655555 345666666
Q ss_pred HHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCcc
Q 003887 461 LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIK 540 (789)
Q Consensus 461 ~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~ 540 (789)
..++... ..+++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 250 ~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~ 328 (400)
T 1s2m_A 250 NTLFSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVN 328 (400)
T ss_dssp HHHHHHS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEE
T ss_pred HHHHhhc-CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCC
Confidence 6666543 457999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHHHHHHcCCCccHH
Q 003887 541 SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSME 600 (789)
Q Consensus 541 ~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~L~~~~~~vp~~ 600 (789)
+||+|++|+++..|+||+||+||.| +.|.|++|+++.+...+..+.+.+....+.+|..
T Consensus 329 ~Vi~~~~p~s~~~~~Qr~GR~gR~g-~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 387 (400)
T 1s2m_A 329 VVINFDFPKTAETYLHRIGRSGRFG-HLGLAINLINWNDRFNLYKIEQELGTEIAAIPAT 387 (400)
T ss_dssp EEEESSCCSSHHHHHHHHCBSSCTT-CCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSS
T ss_pred EEEEeCCCCCHHHHHHhcchhcCCC-CCceEEEEeccchHHHHHHHHHHhCCCccccccc
Confidence 9999999999999999999999999 6799999999999998888888776555555543
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=3e-52 Score=463.82 Aligned_cols=367 Identities=28% Similarity=0.483 Sum_probs=319.2
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEE
Q 003887 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (789)
Q Consensus 225 ~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl 304 (789)
.+|++++|++.+++.|.+.||..|+|+|.++++.++.++++++++|||+|||++|++|++..+... ..++++|||
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~~~lil 82 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVSVLVM 82 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC-----TTCCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc-----CCCeeEEEE
Confidence 569999999999999999999999999999999999999999999999999999999999876432 245689999
Q ss_pred cCcHHHHHHHHHHHHHHhhhc-CcEEEEEEcCCChHHHHHHHhcC-CcEEEeCHHHHHHHHhhccccccceeEEEEcccc
Q 003887 305 APTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD 382 (789)
Q Consensus 305 ~PTreLa~Qi~~~~~k~~~~~-~i~v~~~~gg~~~~~~~~~l~~~-~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah 382 (789)
+||++|+.||++.++++.... ++++..++|+.........+..+ ++|+|+||++|..++......+.++++|||||||
T Consensus 83 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH 162 (391)
T 1xti_A 83 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD 162 (391)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHH
Confidence 999999999999999998765 78999999998887776666554 7999999999999998888889999999999999
Q ss_pred hhccC-CChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeecccc-CccccceEEEEecCCCcchHHHH
Q 003887 383 RMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVG-MANEDITQVVHVIPSDAEKLPWL 460 (789)
Q Consensus 383 ~m~~~-~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~-~~~~~i~q~~~~~~~~~~k~~~L 460 (789)
++.++ ++...+..++...+...|++++|||+++.+..++..++.+|..+.+.... .....+.+.+..+ ....+...+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l 241 (391)
T 1xti_A 163 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKL-KDNEKNRKL 241 (391)
T ss_dssp HHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEEC-CGGGHHHHH
T ss_pred HHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEc-CchhHHHHH
Confidence 99884 67788888888888899999999999999999999999999887765443 2334555555554 345677777
Q ss_pred HHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCcc
Q 003887 461 LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIK 540 (789)
Q Consensus 461 ~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~ 540 (789)
..++... ..+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 242 ~~~l~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~ 320 (391)
T 1xti_A 242 FDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVN 320 (391)
T ss_dssp HHHHHHS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEE
T ss_pred HHHHHhc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCC
Confidence 7776654 567999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccc-cHHHHHHHHHHHHHcCCCccH
Q 003887 541 SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK-EARFAGELVNSLIAAGQNVSM 599 (789)
Q Consensus 541 ~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~-d~~~~~~l~~~L~~~~~~vp~ 599 (789)
+||+|++|+++..|+||+||+||.| +.|.|++|+++. +..++..+.+.+....+.+|.
T Consensus 321 ~Vi~~~~p~s~~~~~Qr~GR~~R~g-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (391)
T 1xti_A 321 IAFNYDMPEDSDTYLHRVARAGRFG-TKGLAITFVSDENDAKILNDVQDRFEVNISELPD 379 (391)
T ss_dssp EEEESSCCSSHHHHHHHHCBCSSSC-CCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCS
T ss_pred EEEEeCCCCCHHHHHHhcccccCCC-CceEEEEEEcccchHHHHHHHHHHhcCChhhCCc
Confidence 9999999999999999999999999 689999999876 455666666666544455544
No 7
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=8e-54 Score=476.73 Aligned_cols=375 Identities=30% Similarity=0.519 Sum_probs=192.0
Q ss_pred CCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCC
Q 003887 220 VPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGP 299 (789)
Q Consensus 220 ~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp 299 (789)
..+++.+|++++|++.+++.|...||..|+|+|.++++.++.++++++++|||+|||++|++|++.++... ..++
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~-----~~~~ 90 (394)
T 1fuu_A 16 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VKAP 90 (394)
T ss_dssp SCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----CCSC
T ss_pred cccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc-----CCCC
Confidence 45677889999999999999999999999999999999999999999999999999999999999886442 3467
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEc
Q 003887 300 IGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLD 379 (789)
Q Consensus 300 ~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlD 379 (789)
++|||+||++|+.||++.+.+++...++++..++|+.........+. +++|+|+||++|...+......+.++++||||
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiD 169 (394)
T 1fuu_A 91 QALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILD 169 (394)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEE
Confidence 89999999999999999999999888899999999988776655554 58999999999999998888888999999999
Q ss_pred ccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHH
Q 003887 380 EADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPW 459 (789)
Q Consensus 380 Eah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~ 459 (789)
|||++.+++|...+..++..+++..|++++|||+++.+..++..++.+|..+.+.........+.+.+..+.....+...
T Consensus 170 Eah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (394)
T 1fuu_A 170 EADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYEC 249 (394)
T ss_dssp THHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC------------------------
T ss_pred ChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHH
Confidence 99999999999999999999999999999999999999999999999999888766555556666666655555456666
Q ss_pred HHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCc
Q 003887 460 LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSI 539 (789)
Q Consensus 460 L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v 539 (789)
+..++... ..+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++
T Consensus 250 l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~ 328 (394)
T 1fuu_A 250 LTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQV 328 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhcC-CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccC
Confidence 66665543 45799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHHHHHHcCCCccHHHH
Q 003887 540 KSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELM 602 (789)
Q Consensus 540 ~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~L~~~~~~vp~~l~ 602 (789)
++||+|++|+++..|+||+||+||.| +.|.|++|+++.+...+..+.+.+...-..+|..+.
T Consensus 329 ~~Vi~~~~p~s~~~~~Qr~GR~~R~g-~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 390 (394)
T 1fuu_A 329 SLVINYDLPANKENYIHRIGRGGRFG-RKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIA 390 (394)
T ss_dssp ---------------------------------------------------------------
T ss_pred CEEEEeCCCCCHHHHHHHcCcccCCC-CCceEEEEEchhHHHHHHHHHHHhCCcccccCcchh
Confidence 99999999999999999999999999 679999999999998888888877766666665544
No 8
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.1e-51 Score=458.88 Aligned_cols=358 Identities=30% Similarity=0.524 Sum_probs=315.7
Q ss_pred CCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC--CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCC
Q 003887 222 RPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGP 299 (789)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~g--rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp 299 (789)
+...+|++++|++.+++.|.+.||..|+|+|.++++.++.+ +++|+++|||+|||++|++|++.++... ..++
T Consensus 2 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~~~ 76 (395)
T 3pey_A 2 AMAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE-----DASP 76 (395)
T ss_dssp --CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----CCSC
T ss_pred ccccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC-----CCCc
Confidence 34688999999999999999999999999999999999998 9999999999999999999999886432 3467
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEc
Q 003887 300 IGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLD 379 (789)
Q Consensus 300 ~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlD 379 (789)
++|||+||++|+.|+++.++++....++.+..++++...... ..+++|+|+||++|..++......+.++++||||
T Consensus 77 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiD 152 (395)
T 3pey_A 77 QAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLD 152 (395)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEE
T ss_pred cEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEE
Confidence 899999999999999999999988888888888877544322 2368999999999999998888889999999999
Q ss_pred ccchhcc-CCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHH
Q 003887 380 EADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLP 458 (789)
Q Consensus 380 Eah~m~~-~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~ 458 (789)
|||++.+ +++...+..++..+++..|+++||||+++.+..++..++.++..+...........+.+.+..+.....+..
T Consensus 153 Eah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (395)
T 3pey_A 153 EADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFD 232 (395)
T ss_dssp THHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHH
T ss_pred ChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHH
Confidence 9999988 678888889999999999999999999999999999999999888877766677777787777766666777
Q ss_pred HHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCC
Q 003887 459 WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKS 538 (789)
Q Consensus 459 ~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~ 538 (789)
.+..++... ..+++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 233 ~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 311 (395)
T 3pey_A 233 VLTELYGLM-TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPT 311 (395)
T ss_dssp HHHHHHTTT-TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTT
T ss_pred HHHHHHHhc-cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCccc
Confidence 777666543 5679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEcCCC------CHHHHHHHHhhcCCCCCCCeEEEEEEccccH-HHHHHHHHHH
Q 003887 539 IKSVVNFDIAR------DMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA-RFAGELVNSL 590 (789)
Q Consensus 539 v~~VI~~d~p~------s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~-~~~~~l~~~L 590 (789)
+++||+||+|+ ++..|+||+||+||.| +.|.|++|+...+. .++..+.+.+
T Consensus 312 ~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~~i~~~~ 369 (395)
T 3pey_A 312 VSMVVNYDLPTLANGQADPATYIHRIGRTGRFG-RKGVAISFVHDKNSFNILSAIQKYF 369 (395)
T ss_dssp EEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTT-CCEEEEEEECSHHHHHHHHHHHHHT
T ss_pred CCEEEEcCCCCCCcCCCCHHHhhHhccccccCC-CCceEEEEEechHHHHHHHHHHHHh
Confidence 99999999999 9999999999999999 67999999987654 4444443333
No 9
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=7e-52 Score=463.83 Aligned_cols=369 Identities=29% Similarity=0.454 Sum_probs=322.2
Q ss_pred CCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC--CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCC
Q 003887 221 PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEG 298 (789)
Q Consensus 221 P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~g--rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~g 298 (789)
+.++.+|+++++++.+++.|.+.||..|+|+|.++++.++.+ +++|+++|||+|||++|++|++.++... ..+
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~~ 95 (412)
T 3fht_A 21 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKY 95 (412)
T ss_dssp TCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SCS
T ss_pred ccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc-----CCC
Confidence 456889999999999999999999999999999999999997 9999999999999999999999887543 346
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHHhhhc-CcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhh-ccccccceeEE
Q 003887 299 PIGVICAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM-KALTMSRVTYL 376 (789)
Q Consensus 299 p~vLIl~PTreLa~Qi~~~~~k~~~~~-~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~-~~~~l~~i~~l 376 (789)
+++|||+||++|+.|+++.++++.... ++.+.+..++...... ....++|+|+||++|.+++.. ..+.+.++++|
T Consensus 96 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~i 172 (412)
T 3fht_A 96 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 172 (412)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEE
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEE
Confidence 689999999999999999999997653 5778888877654322 133579999999999999865 56678899999
Q ss_pred EEcccchhcc-CCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcc
Q 003887 377 VLDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAE 455 (789)
Q Consensus 377 VlDEah~m~~-~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~ 455 (789)
||||||++.+ .++...+..++..++...|+++||||+++.+..++..++.++..+.+.........+.+.+..+.....
T Consensus 173 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (412)
T 3fht_A 173 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE 252 (412)
T ss_dssp EEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHH
T ss_pred EEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHH
Confidence 9999999987 688888899999999999999999999999999999999999988887777777788888888776667
Q ss_pred hHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCC
Q 003887 456 KLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLD 535 (789)
Q Consensus 456 k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlD 535 (789)
+...+..++... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|
T Consensus 253 ~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 331 (412)
T 3fht_A 253 KFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGID 331 (412)
T ss_dssp HHHHHHHHHHHH-SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCC
T ss_pred HHHHHHHHHhhc-CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCC
Confidence 777777766543 4579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEEcCCC------CHHHHHHHHhhcCCCCCCCeEEEEEEcccc-HHHHHHHHHHHHHcCCCccH
Q 003887 536 IKSIKSVVNFDIAR------DMDMHVHRIGRTGRAGDKDGTAYTLVTQKE-ARFAGELVNSLIAAGQNVSM 599 (789)
Q Consensus 536 I~~v~~VI~~d~p~------s~~~y~QriGR~gR~G~~~G~~i~l~~~~d-~~~~~~l~~~L~~~~~~vp~ 599 (789)
+|++++||+||+|+ +...|+||+||+||.| +.|.|++|+++.+ ...+..+.+.+...-..++.
T Consensus 332 ip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 401 (412)
T 3fht_A 332 VEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFG-KRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDT 401 (412)
T ss_dssp CTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTT-CCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC--
T ss_pred ccCCCEEEEECCCCCCCCCcchheeecccCcccCCC-CCceEEEEEcChhhHHHHHHHHHHHCCccccCCC
Confidence 99999999999995 6789999999999999 6799999998765 67777777777555555544
No 10
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=6.9e-52 Score=486.01 Aligned_cols=365 Identities=31% Similarity=0.468 Sum_probs=309.8
Q ss_pred CCCcccCC----CCHHHHHHHHHcCCCCCcHHHHHHHHHHH--cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCC
Q 003887 224 VKTFEDCG----FSTQLMHAISKQGYEKPTSIQCQALPIIL--SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEE 297 (789)
Q Consensus 224 i~sf~~~~----l~~~l~~~l~~~g~~~ptpiQ~~ai~~il--~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~ 297 (789)
..+|+++. |++.+++.|...||..|+|+|.++|+.++ .++++|+++|||+|||++|++|++.++..... ....
T Consensus 16 ~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~-~~~~ 94 (579)
T 3sqw_A 16 EVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-DSQY 94 (579)
T ss_dssp CCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-SSTT
T ss_pred CcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc-cccC
Confidence 34455543 99999999999999999999999999999 78899999999999999999999999876532 1234
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhh----cCcEEEEEEcCCChHHHHHHHhc-CCcEEEeCHHHHHHHHhhc-ccccc
Q 003887 298 GPIGVICAPTRELAHQIYLETKKFAKS----HGIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMK-ALTMS 371 (789)
Q Consensus 298 gp~vLIl~PTreLa~Qi~~~~~k~~~~----~~i~v~~~~gg~~~~~~~~~l~~-~~dIiV~Tp~~L~~~l~~~-~~~l~ 371 (789)
++++|||+||++||.|+++.+++++.. ..+.+..++|+.....++..+.. +++|||+||++|.+++... ...+.
T Consensus 95 ~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~ 174 (579)
T 3sqw_A 95 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFR 174 (579)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCT
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccc
Confidence 678999999999999999999998742 35778899999988888777754 7999999999999988764 45688
Q ss_pred ceeEEEEcccchhccCCChHHHHHHHhhcC-------CCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccc----cCcc
Q 003887 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIR-------PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEV----GMAN 440 (789)
Q Consensus 372 ~i~~lVlDEah~m~~~~f~~~i~~il~~~~-------~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~----~~~~ 440 (789)
.+++|||||||+|++++|...+..++..++ +.+|+++||||+++.+..++..++.++..+.+... ....
T Consensus 175 ~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~ 254 (579)
T 3sqw_A 175 FVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAH 254 (579)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSC
T ss_pred cCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccc
Confidence 899999999999999999999988887663 36799999999999999999999999877765432 2233
Q ss_pred ccceEEEEecCCCcchHHH----HHHhcCCCCCCCcEEEEecccccHHHHHHHHHHc---CCceeeccCCCCHHHHHHHH
Q 003887 441 EDITQVVHVIPSDAEKLPW----LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK---GFKAAALHGDKDQASRMEIL 513 (789)
Q Consensus 441 ~~i~q~~~~~~~~~~k~~~----L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~---g~~v~~lhg~~~~~eR~~~l 513 (789)
..+.+.+........+... +...+.......++||||+++..++.++..|... ++.+..+||+|++.+|..++
T Consensus 255 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~ 334 (579)
T 3sqw_A 255 ERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLV 334 (579)
T ss_dssp TTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHH
T ss_pred cccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHH
Confidence 4556666555443333333 3333333345679999999999999999999987 89999999999999999999
Q ss_pred HHhhcCCccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHHHH
Q 003887 514 QKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSL 590 (789)
Q Consensus 514 ~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~L 590 (789)
+.|++|+.+|||||+++++|||+|+|++||+|++|.++..|+||+||+||.| +.|.|++|+++.+..++..+.+..
T Consensus 335 ~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g-~~g~~i~~~~~~e~~~~~~l~~~~ 410 (579)
T 3sqw_A 335 KRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSG-KEGSSVLFICKDELPFVRELEDAK 410 (579)
T ss_dssp HHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTT-CCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred HHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCC-CCceEEEEEcccHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999 689999999999988888776543
No 11
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=6e-51 Score=448.44 Aligned_cols=356 Identities=35% Similarity=0.608 Sum_probs=318.6
Q ss_pred CCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC-CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEE
Q 003887 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (789)
Q Consensus 224 i~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~g-rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vL 302 (789)
..+|++++|++.+++.|.+.||.+|+|+|.++++.++++ +++++++|||+|||++|++|++..+.. ..++++|
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~------~~~~~~l 78 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE------NNGIEAI 78 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS------SSSCCEE
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc------cCCCcEE
Confidence 457999999999999999999999999999999999988 799999999999999999999887643 2467899
Q ss_pred EEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccc
Q 003887 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD 382 (789)
Q Consensus 303 Il~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah 382 (789)
||+||++|+.||++.+.++....++.+..++|+.....+...+. +++|+|+||++|...+......+.++++|||||||
T Consensus 79 il~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah 157 (367)
T 1hv8_A 79 ILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEAD 157 (367)
T ss_dssp EECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHH
T ss_pred EEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCch
Confidence 99999999999999999998877889999999998877766665 69999999999999998887888999999999999
Q ss_pred hhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHHHH
Q 003887 383 RMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462 (789)
Q Consensus 383 ~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~ 462 (789)
++.+++|...+..++..+++..+++++|||+++.+..++..++.++..+.... ...+.+.+..+ ....+...+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~l~~ 232 (367)
T 1hv8_A 158 EMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI----NANIEQSYVEV-NENERFEALCR 232 (367)
T ss_dssp HHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS----SSSSEEEEEEC-CGGGHHHHHHH
T ss_pred HhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC----CCCceEEEEEe-ChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988876654422 23455555554 45677888888
Q ss_pred hcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEE
Q 003887 463 KLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSV 542 (789)
Q Consensus 463 ~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~V 542 (789)
.+.. ...++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 233 ~l~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~V 310 (367)
T 1hv8_A 233 LLKN--KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCV 310 (367)
T ss_dssp HHCS--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEE
T ss_pred HHhc--CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEE
Confidence 8773 46799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHHHHHHcC
Q 003887 543 VNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAG 594 (789)
Q Consensus 543 I~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~L~~~~ 594 (789)
|+|++|+++..|+||+||+||.| +.|.|++++++.+...+..+.+.+...-
T Consensus 311 i~~~~~~s~~~~~Q~~GR~~R~g-~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 361 (367)
T 1hv8_A 311 INYHLPQNPESYMHRIGRTGRAG-KKGKAISIINRREYKKLRYIERAMKLKI 361 (367)
T ss_dssp EESSCCSCHHHHHHHSTTTCCSS-SCCEEEEEECTTSHHHHHHHHHHHTCCC
T ss_pred EEecCCCCHHHhhhcccccccCC-CccEEEEEEcHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999 6799999999999998888877774433
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.3e-51 Score=482.23 Aligned_cols=357 Identities=31% Similarity=0.473 Sum_probs=304.7
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHH--cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHH
Q 003887 232 FSTQLMHAISKQGYEKPTSIQCQALPIIL--SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRE 309 (789)
Q Consensus 232 l~~~l~~~l~~~g~~~ptpiQ~~ai~~il--~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTre 309 (789)
|++.+++.|.+.||..|+|+|.++|+.++ .++|+|+++|||+|||++|++|++.++...... ...++++|||+||++
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~-~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD-SQYMVKAVIVAPTRD 157 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS-STTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc-ccCCeeEEEEcCcHH
Confidence 99999999999999999999999999999 678999999999999999999999998765422 234578999999999
Q ss_pred HHHHHHHHHHHHhhh----cCcEEEEEEcCCChHHHHHHHh-cCCcEEEeCHHHHHHHHhhc-cccccceeEEEEcccch
Q 003887 310 LAHQIYLETKKFAKS----HGIRVSAVYGGMSKLDQFKELK-AGCEIVIATPGRLIDMLKMK-ALTMSRVTYLVLDEADR 383 (789)
Q Consensus 310 La~Qi~~~~~k~~~~----~~i~v~~~~gg~~~~~~~~~l~-~~~dIiV~Tp~~L~~~l~~~-~~~l~~i~~lVlDEah~ 383 (789)
||.|+++.++++... ..+.+..++|+.....++..+. .+++|||+||++|.+++.+. ...+..+++|||||||+
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 237 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 237 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHH
Confidence 999999999998653 2467888999998887777764 47999999999999988764 44678899999999999
Q ss_pred hccCCChHHHHHHHhhcC-------CCceEEEEeccCcHHHHHHHHHHhCCCeEEeecccc----CccccceEEEEecCC
Q 003887 384 MFDLGFEPQIRSIVGQIR-------PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVG----MANEDITQVVHVIPS 452 (789)
Q Consensus 384 m~~~~f~~~i~~il~~~~-------~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~----~~~~~i~q~~~~~~~ 452 (789)
|++++|...+..++..++ +.+|+++||||+++.+..++..++.++..+.+.... .....+.+.+.....
T Consensus 238 l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (563)
T 3i5x_A 238 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 317 (563)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECch
Confidence 999999999988877653 377999999999999999999999988776654322 233455666655544
Q ss_pred CcchHHHH----HHhcCCCCCCCcEEEEecccccHHHHHHHHHHc---CCceeeccCCCCHHHHHHHHHHhhcCCccEEE
Q 003887 453 DAEKLPWL----LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK---GFKAAALHGDKDQASRMEILQKFKSGVYHVLI 525 (789)
Q Consensus 453 ~~~k~~~L----~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~---g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLV 525 (789)
...+...+ ...+.......++||||+++..++.++..|... ++.+..+||+|++.+|..+++.|++|+.+|||
T Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLv 397 (563)
T 3i5x_A 318 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 397 (563)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 33333333 333333345679999999999999999999987 89999999999999999999999999999999
Q ss_pred eehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHHHH
Q 003887 526 ATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSL 590 (789)
Q Consensus 526 aT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~L 590 (789)
||+++++|||+|+|++||+|++|.++..|+||+||+||.| +.|.|++|+++.+..++..+.+.+
T Consensus 398 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g-~~g~~i~~~~~~e~~~~~~l~~~~ 461 (563)
T 3i5x_A 398 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSG-KEGSSVLFICKDELPFVRELEDAK 461 (563)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTT-CCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred EcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCC-CCceEEEEEchhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999 689999999999988888776654
No 13
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=7.4e-53 Score=483.02 Aligned_cols=367 Identities=29% Similarity=0.460 Sum_probs=178.4
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC--CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCE
Q 003887 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPI 300 (789)
Q Consensus 223 pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~g--rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~ 300 (789)
++.+|.+++|++.+++.|.+.||..|+|+|.++++.++.+ +++|++++||||||++|++|++.++... ..+++
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~-----~~~~~ 164 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKYPQ 164 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT-----SCSCC
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc-----CCCCc
Confidence 4678999999999999999999999999999999999987 9999999999999999999999876443 34668
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhhc-CcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhh-ccccccceeEEEE
Q 003887 301 GVICAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM-KALTMSRVTYLVL 378 (789)
Q Consensus 301 vLIl~PTreLa~Qi~~~~~k~~~~~-~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~-~~~~l~~i~~lVl 378 (789)
+|||+||++||.|+++.++++.... ++.+.+.+++...... ....++|+|+||++|.+++.+ ..+.+.++++|||
T Consensus 165 ~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 241 (479)
T 3fmp_B 165 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (479)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEE
T ss_pred EEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEE
Confidence 9999999999999999999987653 5777777776554322 123579999999999999865 4567889999999
Q ss_pred cccchhcc-CCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchH
Q 003887 379 DEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKL 457 (789)
Q Consensus 379 DEah~m~~-~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~ 457 (789)
||||+|++ .+|...+..++..++..+|+++||||+++.+..++..++.+|..+.+.........+.+.+..+.....+.
T Consensus 242 DEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (479)
T 3fmp_B 242 DEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKF 321 (479)
T ss_dssp CCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-----------------------
T ss_pred ECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHH
Confidence 99999987 67888888999999999999999999999999999999999998888777777777888777776666677
Q ss_pred HHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCC
Q 003887 458 PWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIK 537 (789)
Q Consensus 458 ~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~ 537 (789)
..|..++... ..+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|
T Consensus 322 ~~l~~~~~~~-~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip 400 (479)
T 3fmp_B 322 QALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVE 400 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhhc-cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccc
Confidence 7776666543 456999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEcCCC------CHHHHHHHHhhcCCCCCCCeEEEEEEcccc-HHHHHHHHHHHHHcCCCccH
Q 003887 538 SIKSVVNFDIAR------DMDMHVHRIGRTGRAGDKDGTAYTLVTQKE-ARFAGELVNSLIAAGQNVSM 599 (789)
Q Consensus 538 ~v~~VI~~d~p~------s~~~y~QriGR~gR~G~~~G~~i~l~~~~d-~~~~~~l~~~L~~~~~~vp~ 599 (789)
++++||+||+|+ +...|+||+||+||.| +.|.|++|+++.+ ..++..+.+.+...-..++.
T Consensus 401 ~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g-~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 468 (479)
T 3fmp_B 401 QVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFG-KRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDT 468 (479)
T ss_dssp ---------------------------------------------------------------------
T ss_pred cCCEEEEecCCCCCccCCCHHHHHHHhcccccCC-CCceEEEEEcCcchHHHHHHHHHHhCCCceECCC
Confidence 999999999995 5689999999999999 6899999998765 66666666666544444443
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=6.3e-49 Score=427.48 Aligned_cols=335 Identities=32% Similarity=0.574 Sum_probs=291.4
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHH
Q 003887 232 FSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (789)
Q Consensus 232 l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa 311 (789)
|++.+.+.|.+.||..|+|+|.++++.+++++++++++|||+|||++|++|++.. ++++|||+||++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-----------~~~~liv~P~~~L~ 69 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-----------GMKSLVVTPTRELT 69 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----------TCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-----------cCCEEEEeCCHHHH
Confidence 5788999999999999999999999999999999999999999999999998763 45699999999999
Q ss_pred HHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChH
Q 003887 312 HQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEP 391 (789)
Q Consensus 312 ~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~ 391 (789)
.||++.++++....++++..++|+.....+...+. .++|+|+||++|..++......+.++++|||||||++.+++|..
T Consensus 70 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~ 148 (337)
T 2z0m_A 70 RQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFID 148 (337)
T ss_dssp HHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHH
Confidence 99999999998888899999999988877766655 49999999999999988877788999999999999999999999
Q ss_pred HHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHHHHhcCCCCCCC
Q 003887 392 QIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDG 471 (789)
Q Consensus 392 ~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~ 471 (789)
.+..++..++...++++||||+++.+...+..++.++..+... .....+.+.+..+.... ...+..+.. ...+
T Consensus 149 ~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~ 221 (337)
T 2z0m_A 149 DIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDW---RSKVQALRE-NKDK 221 (337)
T ss_dssp HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSS---HHHHHHHHT-CCCS
T ss_pred HHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHH---HHHHHHHHh-CCCC
Confidence 9999999999999999999999999999999999888766432 33344555555554332 222333332 2467
Q ss_pred cEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEcCCCCH
Q 003887 472 DVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDM 551 (789)
Q Consensus 472 kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~ 551 (789)
++||||+++..++.+++.|. .+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|+++
T Consensus 222 ~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~ 297 (337)
T 2z0m_A 222 GVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDL 297 (337)
T ss_dssp SEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSH
T ss_pred cEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCH
Confidence 99999999999999999886 58899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHHHHH
Q 003887 552 DMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLI 591 (789)
Q Consensus 552 ~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~L~ 591 (789)
..|+||+||+||.| +.|.|++|+. .+..++..+.+.+.
T Consensus 298 ~~~~Q~~GR~gR~g-~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 298 RTYIHRIGRTGRMG-RKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp HHHHHHHTTBCGGG-CCEEEEEEES-SCHHHHHHHC----
T ss_pred HHhhHhcCccccCC-CCceEEEEEe-CcHHHHHHHHHHhc
Confidence 99999999999999 6799999999 88877777766653
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.8e-47 Score=446.73 Aligned_cols=347 Identities=18% Similarity=0.300 Sum_probs=286.0
Q ss_pred CCCcc--cCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCE
Q 003887 224 VKTFE--DCGFSTQLMHAISK-QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPI 300 (789)
Q Consensus 224 i~sf~--~~~l~~~l~~~l~~-~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~ 300 (789)
...|. ++++++.+.+.|++ .||..|+|+|.++|+.+++++|+|+++|||+|||++|++|++.. .++
T Consensus 18 ~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~-----------~g~ 86 (591)
T 2v1x_A 18 PAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS-----------DGF 86 (591)
T ss_dssp GGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS-----------SSE
T ss_pred hhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc-----------CCc
Confidence 34444 47888999999998 59999999999999999999999999999999999999999752 457
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHH---H---hcCCcEEEeCHHHHHH---HHh--hcccc
Q 003887 301 GVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---L---KAGCEIVIATPGRLID---MLK--MKALT 369 (789)
Q Consensus 301 vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~---l---~~~~dIiV~Tp~~L~~---~l~--~~~~~ 369 (789)
+|||+|+++|+.|+++.+.++ ++.+..++++......... + ...++|+|+||++|.. ++. .....
T Consensus 87 ~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~ 162 (591)
T 2v1x_A 87 TLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYE 162 (591)
T ss_dssp EEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHH
T ss_pred EEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhh
Confidence 999999999999999999887 7889999998876654322 2 3468999999998742 221 12445
Q ss_pred ccceeEEEEcccchhccCC--ChHHHHH--HHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceE
Q 003887 370 MSRVTYLVLDEADRMFDLG--FEPQIRS--IVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQ 445 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~--f~~~i~~--il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q 445 (789)
+..+.+|||||||++.+|+ |.+.+.. ++....+..++|+||||+++.+...+..++..+..+.+.. .....++..
T Consensus 163 ~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~~r~nl~~ 241 (591)
T 2v1x_A 163 ARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SFNRPNLYY 241 (591)
T ss_dssp TTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CCCCTTEEE
T ss_pred ccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CCCCcccEE
Confidence 7789999999999999998 7776654 4555567899999999999998888888877654333322 222334433
Q ss_pred EEEecCC-CcchHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEE
Q 003887 446 VVHVIPS-DAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVL 524 (789)
Q Consensus 446 ~~~~~~~-~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VL 524 (789)
.+..... ...+...|++.+......+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++||
T Consensus 242 ~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~Vl 321 (591)
T 2v1x_A 242 EVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVV 321 (591)
T ss_dssp EEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEE
T ss_pred EEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEE
Confidence 3333221 224556777777665567799999999999999999999999999999999999999999999999999999
Q ss_pred EeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHH
Q 003887 525 IATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELV 587 (789)
Q Consensus 525 VaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~ 587 (789)
|||+++++|||+|+|++||+|++|.+++.|+||+||+||.| ++|.|++|+++.|...+..++
T Consensus 322 VAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G-~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 322 VATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDD-MKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp EECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTS-SCEEEEEEECHHHHHHHHHHT
T ss_pred EEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCC-CCceEEEEEChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 689999999998887666554
No 16
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-49 Score=457.66 Aligned_cols=371 Identities=29% Similarity=0.433 Sum_probs=267.7
Q ss_pred CCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC--CCEEEEccCCChhhHHHHHHHHHHHhcCccccc
Q 003887 218 FDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQK 295 (789)
Q Consensus 218 ~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~g--rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~ 295 (789)
...|.++..|...++++.+++.+.+.||..|+++|.++++.++++ +++|++++||+|||++|+++++.++...
T Consensus 112 ~~~p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~----- 186 (508)
T 3fho_A 112 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS----- 186 (508)
T ss_dssp ---------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT-----
T ss_pred cccccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC-----
Confidence 334556667777789999999999999999999999999999998 9999999999999999999999887443
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeE
Q 003887 296 EEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTY 375 (789)
Q Consensus 296 ~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~ 375 (789)
..++++|||+|+++|+.|+++.++++....++.+...+++..... ...+++|+|+||++|...+....+.+.++++
T Consensus 187 ~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~l 262 (508)
T 3fho_A 187 VPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQLDARDIKV 262 (508)
T ss_dssp CCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCE
T ss_pred CCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCCccccCCCE
Confidence 336689999999999999999999998777777766666543322 2346899999999999999888888999999
Q ss_pred EEEcccchhcc-CCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCc
Q 003887 376 LVLDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDA 454 (789)
Q Consensus 376 lVlDEah~m~~-~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~ 454 (789)
|||||||++.+ +++...+..++..+++..|+|++|||+++.+..++..++.++..+.+.........+.+.+..+....
T Consensus 263 IIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 342 (508)
T 3fho_A 263 FVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEE 342 (508)
T ss_dssp EEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CH
T ss_pred EEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchH
Confidence 99999999987 67999999999999999999999999999999999999999988877766666667777777776666
Q ss_pred chHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccC
Q 003887 455 EKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGL 534 (789)
Q Consensus 455 ~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~Gl 534 (789)
.+...+..++... ..+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+
T Consensus 343 ~k~~~l~~ll~~~-~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~Gi 421 (508)
T 3fho_A 343 HKYNVLVELYGLL-TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGI 421 (508)
T ss_dssp HHHHHHHHHHC----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----C
T ss_pred HHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCC
Confidence 7777777777654 567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEEcCC------CCHHHHHHHHhhcCCCCCCCeEEEEEEcc-ccHHHHHHHHHHHHHcCCCccH
Q 003887 535 DIKSIKSVVNFDIA------RDMDMHVHRIGRTGRAGDKDGTAYTLVTQ-KEARFAGELVNSLIAAGQNVSM 599 (789)
Q Consensus 535 DI~~v~~VI~~d~p------~s~~~y~QriGR~gR~G~~~G~~i~l~~~-~d~~~~~~l~~~L~~~~~~vp~ 599 (789)
|+|++++||+|++| .++..|+||+||+||.| +.|.|++|+.. .+...+..+.+.+......++.
T Consensus 422 Dip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g-~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~ 492 (508)
T 3fho_A 422 DVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFG-RVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPT 492 (508)
T ss_dssp CCTTCCEEEC----CC-----CTHHHHHTTSCCC------CEEEEEECTTTSSSSHHHHHHHSCCCCC----
T ss_pred CccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCC-CCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCC
Confidence 99999999999999 78999999999999999 68999999985 4566666666666555555554
No 17
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=5.1e-47 Score=426.30 Aligned_cols=326 Identities=22% Similarity=0.302 Sum_probs=270.6
Q ss_pred HHHHHHHc-CCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHH
Q 003887 236 LMHAISKQ-GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI 314 (789)
Q Consensus 236 l~~~l~~~-g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi 314 (789)
+.+.+++. +| +|+|+|.++++.+++++|+|+++|||+|||++|++|++..+ ..++++|||+||++||.|+
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~--------~~~~~~lil~Pt~~L~~q~ 80 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--------RKGKKSALVFPTVTLVKQT 80 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH--------TTTCCEEEEESSHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh--------cCCCEEEEEECCHHHHHHH
Confidence 44555553 55 89999999999999999999999999999999999988765 3467899999999999999
Q ss_pred HHHHHHHhhhcCcEEEEEEcCCCh---HHHHHHHhcC-CcEEEeCHHHHHHHHhhccccccceeEEEEcccchhc-----
Q 003887 315 YLETKKFAKSHGIRVSAVYGGMSK---LDQFKELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF----- 385 (789)
Q Consensus 315 ~~~~~k~~~~~~i~v~~~~gg~~~---~~~~~~l~~~-~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~----- 385 (789)
++.+++++. .++++..++|+.+. ..++..+..+ ++|+|+||++|.+++.. +.+.++++|||||||++.
T Consensus 81 ~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~ 157 (414)
T 3oiy_A 81 LERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRN 157 (414)
T ss_dssp HHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHH
T ss_pred HHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccch
Confidence 999999987 78999999999988 5666777776 99999999999888764 667799999999998654
Q ss_pred -----c-CCChHH-HHHHHhhcC-----------CCceEEEEecc-CcHHHH-HHHHHHhCCCeEEeeccccCccccceE
Q 003887 386 -----D-LGFEPQ-IRSIVGQIR-----------PDRQTLLFSAT-MPRKVE-KLAREILSDPVRVTVGEVGMANEDITQ 445 (789)
Q Consensus 386 -----~-~~f~~~-i~~il~~~~-----------~~~q~ll~SAT-l~~~v~-~l~~~~l~~p~~i~i~~~~~~~~~i~q 445 (789)
+ ++|... +..++..++ +.+|+++|||| +|..+. .+...++. +.+.........+.+
T Consensus 158 ~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~ 233 (414)
T 3oiy_A 158 IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITH 233 (414)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEE
T ss_pred hhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchh
Confidence 4 788888 788888876 88999999999 565544 33444433 223333344555666
Q ss_pred EEEecCCCcchHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCcee-eccCCCCHHHHHHHHHHhhcCCccEE
Q 003887 446 VVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAA-ALHGDKDQASRMEILQKFKSGVYHVL 524 (789)
Q Consensus 446 ~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~-~lhg~~~~~eR~~~l~~F~~G~~~VL 524 (789)
.+..+ .+...|..++.. ..+++||||+++..++.++..|...++.+. .+||. +|. ++.|++|+++||
T Consensus 234 ~~~~~----~~~~~l~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vL 301 (414)
T 3oiy_A 234 VRISS----RSKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINIL 301 (414)
T ss_dssp EEESS----CCHHHHHHHHHH--HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEE
T ss_pred eeecc----CHHHHHHHHHHH--cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEE
Confidence 65544 455666666655 347999999999999999999999999998 99995 444 999999999999
Q ss_pred Ee----ehhhhccCCCCC-ccEEEEEcCC--CCHHHHHHHHhhcCCCCC---CCeEEEEEEccccHHHHHHHHHHHH
Q 003887 525 IA----TDVAARGLDIKS-IKSVVNFDIA--RDMDMHVHRIGRTGRAGD---KDGTAYTLVTQKEARFAGELVNSLI 591 (789)
Q Consensus 525 Va----T~v~~~GlDI~~-v~~VI~~d~p--~s~~~y~QriGR~gR~G~---~~G~~i~l~~~~d~~~~~~l~~~L~ 591 (789)
|| |+++++|+|+|+ |++||+||+| .++..|+||+||+||.|. +.|.|++|+ .+...+..+.+.+.
T Consensus 302 vat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 302 IGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp EEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred EEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 99 999999999999 9999999999 999999999999999984 479999999 67777777777776
No 18
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.1e-45 Score=427.02 Aligned_cols=342 Identities=19% Similarity=0.331 Sum_probs=279.0
Q ss_pred CCCcccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEE
Q 003887 224 VKTFEDCGFSTQLMHAISK-QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (789)
Q Consensus 224 i~sf~~~~l~~~l~~~l~~-~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vL 302 (789)
+.+|++++|++.+.+.|++ .||..|+|+|.++|+.+++++|+|+++|||+|||++|++|++.. .+.+|
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----------~g~~l 69 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----------NGLTV 69 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----------SSEEE
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-----------CCCEE
Confidence 3578999999999999998 79999999999999999999999999999999999999998742 35689
Q ss_pred EEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHH---HHh-cCCcEEEeCHHHHHHHHhhccccccceeEEEE
Q 003887 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELK-AGCEIVIATPGRLIDMLKMKALTMSRVTYLVL 378 (789)
Q Consensus 303 Il~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~---~l~-~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVl 378 (789)
||+|+++|+.|+++.++++ ++.+..++++........ .+. ..++|+|+||++|........+...++.+|||
T Consensus 70 vi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vVi 145 (523)
T 1oyw_A 70 VVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAV 145 (523)
T ss_dssp EECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEE
T ss_pred EECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEE
Confidence 9999999999999998876 788888888877654432 222 35899999999996432223344578999999
Q ss_pred cccchhccCC--ChHHHHHHH--hhcCCCceEEEEeccCcHHHHHHHHHHh--CCCeEEeeccccCccccceEEEEecCC
Q 003887 379 DEADRMFDLG--FEPQIRSIV--GQIRPDRQTLLFSATMPRKVEKLAREIL--SDPVRVTVGEVGMANEDITQVVHVIPS 452 (789)
Q Consensus 379 DEah~m~~~~--f~~~i~~il--~~~~~~~q~ll~SATl~~~v~~l~~~~l--~~p~~i~i~~~~~~~~~i~q~~~~~~~ 452 (789)
||||++.+|+ |.+.+..+. ....+..+++++|||+++.+...+...+ .++..+ +... ...++...+. .
T Consensus 146 DEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~~--~r~~l~~~v~---~ 219 (523)
T 1oyw_A 146 DEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSF--DRPNIRYMLM---E 219 (523)
T ss_dssp SSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEE-ECCC--CCTTEEEEEE---E
T ss_pred eCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE-eCCC--CCCceEEEEE---e
Confidence 9999999987 666655432 2223578999999999988765444443 344333 2222 2233332222 2
Q ss_pred CcchHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhc
Q 003887 453 DAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAAR 532 (789)
Q Consensus 453 ~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~ 532 (789)
...+...|+..+... ...++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++
T Consensus 220 ~~~~~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~ 298 (523)
T 1oyw_A 220 KFKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGM 298 (523)
T ss_dssp CSSHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCT
T ss_pred CCCHHHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhC
Confidence 345667777777643 4569999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHH
Q 003887 533 GLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVN 588 (789)
Q Consensus 533 GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~ 588 (789)
|||+|++++||+|++|+++..|+||+||+||.| ..|.|++|+++.|...+..++.
T Consensus 299 GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g-~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 299 GINKPNVRFVVHFDIPRNIESYYQETGRAGRDG-LPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp TTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTS-SCEEEEEEECHHHHHHHHHHHH
T ss_pred CCCccCccEEEEECCCCCHHHHHHHhccccCCC-CCceEEEEeCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999 6899999999998877766654
No 19
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=3.5e-45 Score=428.58 Aligned_cols=374 Identities=22% Similarity=0.254 Sum_probs=287.4
Q ss_pred cccCccccccccCChhccCCCHHHHHHHHHHcCcccccCCCCCCCCCcccCCCCHHHHHHHH--------HcCCCCCcHH
Q 003887 180 IDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAIS--------KQGYEKPTSI 251 (789)
Q Consensus 180 ~~~~~f~k~fy~~~~~i~~~s~~~~~~~r~~~~i~v~~~~~P~pi~sf~~~~l~~~l~~~l~--------~~g~~~ptpi 251 (789)
..|.++.+.++...+.+..|+.+++.....++...+.... + |++.+.+++. ..|| .|+|+
T Consensus 20 k~~~~~~~~in~~~~~~~~lsd~el~~~t~~~~~~~~~g~------~-----ld~~l~ea~a~vrea~~r~lG~-~pt~V 87 (844)
T 1tf5_A 20 NRYEKIANDIDAIRGDYENLSDDALKHKTIEFKERLEKGA------T-----TDDLLVEAFAVVREASRRVTGM-FPFKV 87 (844)
T ss_dssp CHHHHHHHHHHHTTHHHHTCCHHHHHHHHHHHHHHHHTTC------C-----HHHHHHHHHHHHHHHHHHHHSC-CCCHH
T ss_pred HHHHHHHHHHHhhhHHHHhCCHHHHHHHHHHHHHHHhcCC------C-----hHHHHHHHHHHHHHHHHHHcCC-CCcHH
Confidence 3466777788888999999999999887777654442111 1 2222333332 4799 99999
Q ss_pred HHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEE
Q 003887 252 QCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSA 331 (789)
Q Consensus 252 Q~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~ 331 (789)
|..++|.+++|+ |+.++||+|||++|++|++.+.+ .++.++||+||++||.|+++++..++..+++++.+
T Consensus 88 Q~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL--------~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~ 157 (844)
T 1tf5_A 88 QLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL--------TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGL 157 (844)
T ss_dssp HHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT--------TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH--------cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEE
Confidence 999999999998 99999999999999999986543 25679999999999999999999999999999999
Q ss_pred EEcCCChHHHHHHHhcCCcEEEeCHHHH-HHHHhhc------cccccceeEEEEcccchhc-cCC---------------
Q 003887 332 VYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMK------ALTMSRVTYLVLDEADRMF-DLG--------------- 388 (789)
Q Consensus 332 ~~gg~~~~~~~~~l~~~~dIiV~Tp~~L-~~~l~~~------~~~l~~i~~lVlDEah~m~-~~~--------------- 388 (789)
++||.+...+ .+..++||+|+||++| .+++... .+.+..+.++||||||+|+ +.+
T Consensus 158 i~gg~~~~~r--~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~ 235 (844)
T 1tf5_A 158 NLNSMSKDEK--REAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTK 235 (844)
T ss_dssp CCTTSCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCH
T ss_pred EeCCCCHHHH--HHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchh
Confidence 9999876543 3445799999999999 6666543 4567899999999999998 764
Q ss_pred ChHHHHHHHhhcC---------CCceEE-----------------EEeccCcH---HHHHH--HHHHhC-CCeEEe----
Q 003887 389 FEPQIRSIVGQIR---------PDRQTL-----------------LFSATMPR---KVEKL--AREILS-DPVRVT---- 432 (789)
Q Consensus 389 f~~~i~~il~~~~---------~~~q~l-----------------l~SATl~~---~v~~l--~~~~l~-~p~~i~---- 432 (789)
|...+..++..++ +.+|++ +||||++. .+... +..++. +...+.
T Consensus 236 ~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~ 315 (844)
T 1tf5_A 236 LYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQ 315 (844)
T ss_dssp HHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTE
T ss_pred HHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCe
Confidence 5678899999987 368888 99999864 34333 222332 111110
Q ss_pred ---ec-----------------------------cccCccccce------------------------------------
Q 003887 433 ---VG-----------------------------EVGMANEDIT------------------------------------ 444 (789)
Q Consensus 433 ---i~-----------------------------~~~~~~~~i~------------------------------------ 444 (789)
+. ........|.
T Consensus 316 v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~I 395 (844)
T 1tf5_A 316 VVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTI 395 (844)
T ss_dssp EEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEEC
T ss_pred eEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEe
Confidence 00 0000000000
Q ss_pred ----------EEEEecCCCcchHHHHHHhcCCC-CCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHH
Q 003887 445 ----------QVVHVIPSDAEKLPWLLEKLPGM-IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEIL 513 (789)
Q Consensus 445 ----------q~~~~~~~~~~k~~~L~~~L~~~-~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l 513 (789)
+...+......|+..|+..+... ....++||||++++.++.|+..|...|+++.+|||++.+.+|..+.
T Consensus 396 Ptn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~ 475 (844)
T 1tf5_A 396 PTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIE 475 (844)
T ss_dssp CCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHT
T ss_pred cCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHH
Confidence 00011223456777777777543 2356899999999999999999999999999999999888887666
Q ss_pred HHhhcCCccEEEeehhhhccCCCC--------CccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccH
Q 003887 514 QKFKSGVYHVLIATDVAARGLDIK--------SIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (789)
Q Consensus 514 ~~F~~G~~~VLVaT~v~~~GlDI~--------~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~ 580 (789)
..|+.| .|||||++++||+||+ ++.+||||+.|.+...|+||+|||||.| ++|.+++|++..|.
T Consensus 476 ~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG-~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 476 EAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQG-DPGITQFYLSMEDE 547 (844)
T ss_dssp TTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGG-CCEEEEEEEETTSS
T ss_pred HcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCC-CCCeEEEEecHHHH
Confidence 666665 6999999999999999 8889999999999999999999999999 78999999998774
No 20
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-45 Score=451.54 Aligned_cols=331 Identities=18% Similarity=0.200 Sum_probs=261.3
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEc
Q 003887 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305 (789)
Q Consensus 226 sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~ 305 (789)
.|..++++..+...+....+..|+|+|.++|+.++.++++|++|+||||||++|++|++..+ ..++++||++
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l--------~~g~rvlvl~ 234 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSL--------KNKQRVIYTS 234 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHH--------HTTCEEEEEE
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHH--------hcCCeEEEEc
Confidence 45555566555555556667789999999999999999999999999999999999999887 2367899999
Q ss_pred CcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhc
Q 003887 306 PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (789)
Q Consensus 306 PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~ 385 (789)
||++|+.|+++.+.+++. .+.+++|+.... .+++|+|+||++|.+++......+.++++|||||||+|.
T Consensus 235 PtraLa~Q~~~~l~~~~~----~VglltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~ 303 (1108)
T 3l9o_A 235 PIKALSNQKYRELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMR 303 (1108)
T ss_dssp SSHHHHHHHHHHHHHHTS----SEEEECSSCBCC-------CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTT
T ss_pred CcHHHHHHHHHHHHHHhC----CccEEeCccccC-------CCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhcc
Confidence 999999999999999864 567788877643 358999999999999998887778999999999999999
Q ss_pred cCCChHHHHHHHhhcCCCceEEEEeccCcHH--HHHHHHHHhCCCeEEeeccccCccccceEEEEecC---------CC-
Q 003887 386 DLGFEPQIRSIVGQIRPDRQTLLFSATMPRK--VEKLAREILSDPVRVTVGEVGMANEDITQVVHVIP---------SD- 453 (789)
Q Consensus 386 ~~~f~~~i~~il~~~~~~~q~ll~SATl~~~--v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~---------~~- 453 (789)
+++|...+..++..+++.+|+|+||||+|+. +..++..+...|..+....... ..+.+.+.... ..
T Consensus 304 d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp--~pl~~~~~~~~~~~~~~~vd~~~ 381 (1108)
T 3l9o_A 304 DKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP--TPLQHYLFPAHGDGIYLVVDEKS 381 (1108)
T ss_dssp SHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCS--SCEEEEEEETTSSCCEEEEETTT
T ss_pred ccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc--ccceEEEeecCCcceeeeecccc
Confidence 9999999999999999999999999999875 3355556666666554432211 11222111100 00
Q ss_pred --------------------------------------------cchHHHHHHhcCCCCCCCcEEEEecccccHHHHHHH
Q 003887 454 --------------------------------------------AEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQ 489 (789)
Q Consensus 454 --------------------------------------------~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~ 489 (789)
..++..++..+... ..+++||||+++..|+.++..
T Consensus 382 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~-~~~~vIVF~~sr~~~e~la~~ 460 (1108)
T 3l9o_A 382 TFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK-KYNPVIVFSFSKRDCEELALK 460 (1108)
T ss_dssp EECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHT-TCCCEEEEESCHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhc-CCCCEEEEeCcHHHHHHHHHH
Confidence 11122233333221 345899999999999999998
Q ss_pred HHHcCCc---------------------------------------eeeccCCCCHHHHHHHHHHhhcCCccEEEeehhh
Q 003887 490 LAQKGFK---------------------------------------AAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530 (789)
Q Consensus 490 L~~~g~~---------------------------------------v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~ 530 (789)
|...++. +..+||+|++.+|..++..|++|.++|||||+++
T Consensus 461 L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vl 540 (1108)
T 3l9o_A 461 MSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETF 540 (1108)
T ss_dssp TCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCC
T ss_pred HHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHH
Confidence 8653222 7899999999999999999999999999999999
Q ss_pred hccCCCCCccEEEEEcCC--------CCHHHHHHHHhhcCCCC-CCCeEEEEEEccc
Q 003887 531 ARGLDIKSIKSVVNFDIA--------RDMDMHVHRIGRTGRAG-DKDGTAYTLVTQK 578 (789)
Q Consensus 531 ~~GlDI~~v~~VI~~d~p--------~s~~~y~QriGR~gR~G-~~~G~~i~l~~~~ 578 (789)
++|||+|++++||+++.| .++..|+||+||+||.| ...|.||+++.+.
T Consensus 541 a~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 541 SIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp CSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred hcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 999999999999977653 37788999999999999 3479999998876
No 21
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=5.2e-44 Score=416.01 Aligned_cols=330 Identities=20% Similarity=0.210 Sum_probs=207.6
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhh
Q 003887 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (789)
Q Consensus 245 ~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~ 324 (789)
..+|+|+|.+++++++.++++|++++||+|||++|++|++..+...+. ..++++|||+||++|+.||++++++++..
T Consensus 5 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 5 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA---GRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp ---CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS---SCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc---cCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 458999999999999999999999999999999999999998866431 23678999999999999999999999988
Q ss_pred cCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccc-cccceeEEEEcccchhccCCChHHHH-HHHhh-c-
Q 003887 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL-TMSRVTYLVLDEADRMFDLGFEPQIR-SIVGQ-I- 400 (789)
Q Consensus 325 ~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~-~l~~i~~lVlDEah~m~~~~f~~~i~-~il~~-~- 400 (789)
.++++..++|+.....++..+..+++|+|+||++|.+++....+ .+..+++|||||||++.++++...+. .++.. +
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 161 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN 161 (556)
T ss_dssp GTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHC
T ss_pred cCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhc
Confidence 89999999999877777777777899999999999999988777 78999999999999999876544432 22221 1
Q ss_pred --CCCceEEEEeccCcH-----------HHHHHHHHHh------------------CCCeEEeeccccCcccc-------
Q 003887 401 --RPDRQTLLFSATMPR-----------KVEKLAREIL------------------SDPVRVTVGEVGMANED------- 442 (789)
Q Consensus 401 --~~~~q~ll~SATl~~-----------~v~~l~~~~l------------------~~p~~i~i~~~~~~~~~------- 442 (789)
.+..|+|+||||++. .+..+...+. ..|....+.........
T Consensus 162 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (556)
T 4a2p_A 162 SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISN 241 (556)
T ss_dssp C---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHH
T ss_pred ccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHH
Confidence 456899999999843 2222222221 11111111000000000
Q ss_pred -----------ce---EEE-------------------------------------------------------------
Q 003887 443 -----------IT---QVV------------------------------------------------------------- 447 (789)
Q Consensus 443 -----------i~---q~~------------------------------------------------------------- 447 (789)
+. ...
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 321 (556)
T 4a2p_A 242 LMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 321 (556)
T ss_dssp HHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 00 000
Q ss_pred -------------------------------------------EecCCCcchHHHHHHhcCCC---CCCCcEEEEecccc
Q 003887 448 -------------------------------------------HVIPSDAEKLPWLLEKLPGM---IDDGDVLVFASKKT 481 (789)
Q Consensus 448 -------------------------------------------~~~~~~~~k~~~L~~~L~~~---~~~~kvLVF~~s~~ 481 (789)
........|...|.++|... ....++||||+++.
T Consensus 322 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~ 401 (556)
T 4a2p_A 322 RIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRA 401 (556)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHH
Confidence 00000234555666666543 34679999999999
Q ss_pred cHHHHHHHHHHc------------CCceeeccCCCCHHHHHHHHHHhhc-CCccEEEeehhhhccCCCCCccEEEEEcCC
Q 003887 482 TVDEIESQLAQK------------GFKAAALHGDKDQASRMEILQKFKS-GVYHVLIATDVAARGLDIKSIKSVVNFDIA 548 (789)
Q Consensus 482 ~a~~l~~~L~~~------------g~~v~~lhg~~~~~eR~~~l~~F~~-G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p 548 (789)
.++.|+..|... |..+..+||+|++.+|..+++.|++ |.++|||||+++++|||+|+|++||+||+|
T Consensus 402 ~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p 481 (556)
T 4a2p_A 402 LVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYS 481 (556)
T ss_dssp HHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETCC
T ss_pred HHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCC
Confidence 999999999875 4556667788999999999999999 999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhcCCCCCCCeEEEEEEccccH
Q 003887 549 RDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (789)
Q Consensus 549 ~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~ 580 (789)
+|+..|+||+|| ||. +.|.|++|++..+.
T Consensus 482 ~s~~~~~Qr~GR-gR~--~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 482 GNVTKMIQVRGR-GRA--AGSKCILVTSKTEV 510 (556)
T ss_dssp SCHHHHHHC-----------CCEEEEESCHHH
T ss_pred CCHHHHHHhcCC-CCC--CCceEEEEEeCcch
Confidence 999999999999 998 47999999998754
No 22
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1e-42 Score=418.08 Aligned_cols=341 Identities=24% Similarity=0.346 Sum_probs=269.7
Q ss_pred CCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEE
Q 003887 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPI-ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (789)
Q Consensus 224 i~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~-il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vL 302 (789)
..+|++++|++.+.+.+.+.||..|+|+|.++++. +++++++|+++|||||||++|.++++.++... +.++|
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~il 79 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-------GGKAI 79 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-------CSEEE
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-------CCeEE
Confidence 35799999999999999999999999999999999 78899999999999999999999999887532 57899
Q ss_pred EEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccc
Q 003887 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD 382 (789)
Q Consensus 303 Il~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah 382 (789)
|++|+++||.|+++.++++. ..++++..++|+....... ...++|+|+||++|..++......+.++++|||||||
T Consensus 80 ~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H 155 (715)
T 2va8_A 80 YVTPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDAW---LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELH 155 (715)
T ss_dssp EECSCHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCGG---GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGG
T ss_pred EEeCcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchhh---cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechh
Confidence 99999999999999996553 4588999999987654321 2368999999999999998877678999999999999
Q ss_pred hhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccC-------ccccceEEEEecC----
Q 003887 383 RMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGM-------ANEDITQVVHVIP---- 451 (789)
Q Consensus 383 ~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~-------~~~~i~q~~~~~~---- 451 (789)
++.++.+...+..++..++ +.|+|+||||+++ ...++.++...++......... ........+.+..
T Consensus 156 ~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~~l~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 233 (715)
T 2va8_A 156 YLNDPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAKWLGAEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTK 233 (715)
T ss_dssp GGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHHHHTCEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEE
T ss_pred hcCCcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHHHhCCCccCCCCCCCCceEEEEecCCcccceeeecCcchhh
Confidence 9998889988888888877 8999999999985 3666665543211110000000 0000000111111
Q ss_pred ---CCcchHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcC----------------------------------
Q 003887 452 ---SDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKG---------------------------------- 494 (789)
Q Consensus 452 ---~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g---------------------------------- 494 (789)
....+...+.+.+. ..+++||||+++..++.++..|....
T Consensus 234 ~~~~~~~~~~~~~~~~~---~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 310 (715)
T 2va8_A 234 KVHGDDAIIAYTLDSLS---KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSL 310 (715)
T ss_dssp EEESSSHHHHHHHHHHT---TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHh---cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHH
Confidence 01233444444443 46899999999999999999998642
Q ss_pred --CceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEE----Ec-------CCCCHHHHHHHHhhc
Q 003887 495 --FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN----FD-------IARDMDMHVHRIGRT 561 (789)
Q Consensus 495 --~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~----~d-------~p~s~~~y~QriGR~ 561 (789)
..+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+||+
T Consensus 311 ~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRa 390 (715)
T 2va8_A 311 ISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRA 390 (715)
T ss_dssp HTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTB
T ss_pred HhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhc
Confidence 24899999999999999999999999999999999999999999999999 99 899999999999999
Q ss_pred CCCCC-CCeEEEEEEccccH
Q 003887 562 GRAGD-KDGTAYTLVTQKEA 580 (789)
Q Consensus 562 gR~G~-~~G~~i~l~~~~d~ 580 (789)
||.|. ..|.||++++..+.
T Consensus 391 GR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 391 GRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp CCTTTCSCEEEEEECSCGGG
T ss_pred CCCCCCCCceEEEEeCCchH
Confidence 99983 37999999987763
No 23
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.2e-43 Score=412.36 Aligned_cols=330 Identities=20% Similarity=0.253 Sum_probs=233.4
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003887 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~ 325 (789)
.+|+|+|.+++++++.++++|++++||+|||++|++|++..+...+. ..++++|||+||++|+.||++++++++...
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC---GQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS---SCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc---CCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 37999999999999999999999999999999999999998876532 236789999999999999999999999888
Q ss_pred CcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccc-cccceeEEEEcccchhccCCChHH-HHHHHhhc---
Q 003887 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL-TMSRVTYLVLDEADRMFDLGFEPQ-IRSIVGQI--- 400 (789)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~-~l~~i~~lVlDEah~m~~~~f~~~-i~~il~~~--- 400 (789)
++++..++|+.....++..+..+++|+|+||++|..++....+ .+..+++|||||||++.+.+.... +..++...
T Consensus 80 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 159 (555)
T 3tbk_A 80 GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGE 159 (555)
T ss_dssp TCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSS
T ss_pred CcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhcc
Confidence 9999999999977776677777899999999999999988776 788999999999999988753222 22333322
Q ss_pred --CCCceEEEEeccCcHH-----------HHHHHHHHhCCCeEEeeccc-----cCccccceEEEEecC-----------
Q 003887 401 --RPDRQTLLFSATMPRK-----------VEKLAREILSDPVRVTVGEV-----GMANEDITQVVHVIP----------- 451 (789)
Q Consensus 401 --~~~~q~ll~SATl~~~-----------v~~l~~~~l~~p~~i~i~~~-----~~~~~~i~q~~~~~~----------- 451 (789)
.+..|+++||||++.. +..+...+ .-......... ........ .+..+.
T Consensus 160 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~ 237 (555)
T 3tbk_A 160 SRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAAL-DASVIATVRDNVAELEQVVYKPQK-ISRKVASRTSNTFKCII 237 (555)
T ss_dssp CCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHT-TCSEEECCCSCHHHHHTTCCCCCE-EEEECCCCSCCHHHHHH
T ss_pred ccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhc-CCeeeeccccCHHHHHhhcCCCce-EEEEecCcccChHHHHH
Confidence 2567999999998542 22222221 11111100000 00000000 000000
Q ss_pred --------------------------------------------------------------------------------
Q 003887 452 -------------------------------------------------------------------------------- 451 (789)
Q Consensus 452 -------------------------------------------------------------------------------- 451 (789)
T Consensus 238 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 317 (555)
T 3tbk_A 238 SQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIIS 317 (555)
T ss_dssp HHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence
Q ss_pred --------------------------------------------------CCcchHHHHHHhcCCC---CCCCcEEEEec
Q 003887 452 --------------------------------------------------SDAEKLPWLLEKLPGM---IDDGDVLVFAS 478 (789)
Q Consensus 452 --------------------------------------------------~~~~k~~~L~~~L~~~---~~~~kvLVF~~ 478 (789)
....|...|.++|... ....++||||+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~ 397 (555)
T 3tbk_A 318 EDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVK 397 (555)
T ss_dssp HHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECS
T ss_pred hhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeC
Confidence 0134555666655543 24579999999
Q ss_pred ccccHHHHHHHHHHcC----C--------ceeeccCCCCHHHHHHHHHHhhc-CCccEEEeehhhhccCCCCCccEEEEE
Q 003887 479 KKTTVDEIESQLAQKG----F--------KAAALHGDKDQASRMEILQKFKS-GVYHVLIATDVAARGLDIKSIKSVVNF 545 (789)
Q Consensus 479 s~~~a~~l~~~L~~~g----~--------~v~~lhg~~~~~eR~~~l~~F~~-G~~~VLVaT~v~~~GlDI~~v~~VI~~ 545 (789)
++..++.|+..|...+ + ....+||+|++.+|..+++.|++ |.++|||||+++++|||+|+|++||+|
T Consensus 398 ~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~ 477 (555)
T 3tbk_A 398 TRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILY 477 (555)
T ss_dssp SHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEE
T ss_pred cHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEe
Confidence 9999999999999864 3 44455669999999999999999 999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHH
Q 003887 546 DIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFA 583 (789)
Q Consensus 546 d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~ 583 (789)
|+|+|+..|+||+|| ||. +.|.+++|+++.+....
T Consensus 478 d~p~s~~~~~Qr~GR-gR~--~~g~~~~l~~~~~~~~~ 512 (555)
T 3tbk_A 478 EYVGNVIKMIQTRGR-GRA--RDSKCFLLTSSADVIEK 512 (555)
T ss_dssp SCCSSCCCEECSSCC-CTT--TSCEEEEEESCHHHHHH
T ss_pred CCCCCHHHHHHhcCc-CcC--CCceEEEEEcCCCHHHH
Confidence 999999999999999 897 57999999998766544
No 24
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=5e-43 Score=420.95 Aligned_cols=335 Identities=20% Similarity=0.288 Sum_probs=274.1
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEE
Q 003887 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPI-ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (789)
Q Consensus 226 sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~-il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl 304 (789)
+|++++|++.+.+.+++.||..|+|+|.++++. ++.++++|+++|||||||++|.+|++.++... +.++||+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~~l~i 74 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-------GGKAVYI 74 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-------CSEEEEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------CCEEEEE
Confidence 588999999999999999999999999999998 88999999999999999999999999887532 5789999
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchh
Q 003887 305 APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM 384 (789)
Q Consensus 305 ~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m 384 (789)
+|+++||.|+++.++++.. .++++..++|+...... ....++|+|+||++|..++......+.++++|||||||++
T Consensus 75 ~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l 150 (720)
T 2zj8_A 75 VPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLI 150 (720)
T ss_dssp CSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGG
T ss_pred cCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCccc
Confidence 9999999999999976544 58899999997655432 1236899999999999998877666899999999999999
Q ss_pred ccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEE------EEecCC----Cc
Q 003887 385 FDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQV------VHVIPS----DA 454 (789)
Q Consensus 385 ~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~------~~~~~~----~~ 454 (789)
.++.+...+..++..++.+.|+|+||||+++ ...++.++...+ +... .....+... +..... ..
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~~l~~~~--~~~~---~rp~~l~~~~~~~~~~~~~~~~~~~~~ 224 (720)
T 2zj8_A 151 GSRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAEWLNAEL--IVSD---WRPVKLRRGVFYQGFVTWEDGSIDRFS 224 (720)
T ss_dssp GCTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHHHTTEEE--EECC---CCSSEEEEEEEETTEEEETTSCEEECS
T ss_pred CCCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHHHhCCcc--cCCC---CCCCcceEEEEeCCeeeccccchhhhh
Confidence 9988999999999988888999999999986 456666543211 1110 001111111 111110 23
Q ss_pred chHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHc---------------------------------CCceeecc
Q 003887 455 EKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK---------------------------------GFKAAALH 501 (789)
Q Consensus 455 ~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~---------------------------------g~~v~~lh 501 (789)
.+...+.+.+. ..+++||||+++..++.++..|.+. ...+..+|
T Consensus 225 ~~~~~~~~~~~---~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h 301 (720)
T 2zj8_A 225 SWEELVYDAIR---KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHH 301 (720)
T ss_dssp STTHHHHHHHH---TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEEC
T ss_pred HHHHHHHHHHh---CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeec
Confidence 34455555443 4589999999999999999998753 12489999
Q ss_pred CCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEE----Ec----CCCCHHHHHHHHhhcCCCC-CCCeEEE
Q 003887 502 GDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN----FD----IARDMDMHVHRIGRTGRAG-DKDGTAY 572 (789)
Q Consensus 502 g~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~----~d----~p~s~~~y~QriGR~gR~G-~~~G~~i 572 (789)
|+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.++.+|+||+||+||.| ...|.|+
T Consensus 302 ~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~ 381 (720)
T 2zj8_A 302 AGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGI 381 (720)
T ss_dssp TTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEE
Confidence 9999999999999999999999999999999999999999998 77 6899999999999999998 3469999
Q ss_pred EEEccccH
Q 003887 573 TLVTQKEA 580 (789)
Q Consensus 573 ~l~~~~d~ 580 (789)
+|++..+.
T Consensus 382 ~l~~~~~~ 389 (720)
T 2zj8_A 382 IVSTSDDP 389 (720)
T ss_dssp EECSSSCH
T ss_pred EEecCccH
Confidence 99998773
No 25
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1e-43 Score=425.64 Aligned_cols=341 Identities=21% Similarity=0.251 Sum_probs=226.0
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHH
Q 003887 238 HAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLE 317 (789)
Q Consensus 238 ~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~ 317 (789)
..+...||.+|+|+|.+++++++.++++|++++||+|||++|++|++.++...+. ..++++|||+||++|+.||.++
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~---~~~~~~lvl~Pt~~L~~Q~~~~ 80 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ---GQKGKVVFFANQIPVYEQNKSV 80 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT---TCCCCEEEECSSHHHHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc---CCCCeEEEEECCHHHHHHHHHH
Confidence 4566789999999999999999999999999999999999999999998865431 2236799999999999999999
Q ss_pred HHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccc-cccceeEEEEcccchhccCCChHHH-HH
Q 003887 318 TKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL-TMSRVTYLVLDEADRMFDLGFEPQI-RS 395 (789)
Q Consensus 318 ~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~-~l~~i~~lVlDEah~m~~~~f~~~i-~~ 395 (789)
+++++...++++..++|+.....+...+..+++|+|+||++|.+.+....+ .+..+++|||||||++.+......+ ..
T Consensus 81 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~ 160 (696)
T 2ykg_A 81 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFN 160 (696)
T ss_dssp HHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHH
T ss_pred HHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHH
Confidence 999998778999999999876666666777899999999999999988766 7899999999999998865422222 22
Q ss_pred HHhh-----cCCCceEEEEeccCc-------H-HHHHHHHH---------------------HhCCCeEEeeccccC---
Q 003887 396 IVGQ-----IRPDRQTLLFSATMP-------R-KVEKLARE---------------------ILSDPVRVTVGEVGM--- 438 (789)
Q Consensus 396 il~~-----~~~~~q~ll~SATl~-------~-~v~~l~~~---------------------~l~~p~~i~i~~~~~--- 438 (789)
.+.. .++..++|+||||+. . .+..+... +...|..........
T Consensus 161 ~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~ 240 (696)
T 2ykg_A 161 YLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD 240 (696)
T ss_dssp HHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCC
T ss_pred HHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCC
Confidence 2222 246789999999986 1 12222111 111121111000000
Q ss_pred --------------------------------------------------------------------------------
Q 003887 439 -------------------------------------------------------------------------------- 438 (789)
Q Consensus 439 -------------------------------------------------------------------------------- 438 (789)
T Consensus 241 ~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 320 (696)
T 2ykg_A 241 KFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYN 320 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHh
Confidence
Q ss_pred ----------------------------ccccceEEEEe---------------cCCCcchHHHHHHhcCCC---CCCCc
Q 003887 439 ----------------------------ANEDITQVVHV---------------IPSDAEKLPWLLEKLPGM---IDDGD 472 (789)
Q Consensus 439 ----------------------------~~~~i~q~~~~---------------~~~~~~k~~~L~~~L~~~---~~~~k 472 (789)
....+.+.+.. ......|...|..+|... ...++
T Consensus 321 ~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~ 400 (696)
T 2ykg_A 321 DALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 400 (696)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCC
T ss_pred HHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCc
Confidence 00000000000 001234666666666543 24569
Q ss_pred EEEEecccccHHHHHHHHHHcC----Cceeec--------cCCCCHHHHHHHHHHhhc-CCccEEEeehhhhccCCCCCc
Q 003887 473 VLVFASKKTTVDEIESQLAQKG----FKAAAL--------HGDKDQASRMEILQKFKS-GVYHVLIATDVAARGLDIKSI 539 (789)
Q Consensus 473 vLVF~~s~~~a~~l~~~L~~~g----~~v~~l--------hg~~~~~eR~~~l~~F~~-G~~~VLVaT~v~~~GlDI~~v 539 (789)
+||||+++..++.|++.|...+ +.+..+ |++|++.+|..+++.|++ |+++|||||+++++|||||+|
T Consensus 401 ~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v 480 (696)
T 2ykg_A 401 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQC 480 (696)
T ss_dssp EEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCC
T ss_pred EEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccC
Confidence 9999999999999999999988 888888 459999999999999998 999999999999999999999
Q ss_pred cEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHH
Q 003887 540 KSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAG 584 (789)
Q Consensus 540 ~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~ 584 (789)
++||+||+|+++..|+||+|| ||. +.|.|++|++..+.....
T Consensus 481 ~~VI~~d~p~s~~~~~Qr~GR-GR~--~~g~~~~l~~~~~~~~~~ 522 (696)
T 2ykg_A 481 NLVILYEYVGNVIKMIQTRGR-GRA--RGSKCFLLTSNAGVIEKE 522 (696)
T ss_dssp SEEEEESCC--CCCC------------CCCEEEEEESCHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHhhcc-CcC--CCceEEEEecCCCHHHHH
Confidence 999999999999999999999 997 479999999987764433
No 26
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=2.2e-42 Score=419.67 Aligned_cols=332 Identities=20% Similarity=0.211 Sum_probs=214.3
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHh
Q 003887 243 QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (789)
Q Consensus 243 ~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~ 322 (789)
.|+..|+|+|.++++.++.++++|++++||+|||++|++|++.++...+. ..++++||||||++|+.||++.+++++
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~---~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~ 320 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA---GRKAKVVFLATKVPVYEQQKNVFKHHF 320 (797)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS---SCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc---cCCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 36789999999999999999999999999999999999999998866431 236789999999999999999999999
Q ss_pred hhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccc-cccceeEEEEcccchhccCCChHHHH-HHHhhc
Q 003887 323 KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL-TMSRVTYLVLDEADRMFDLGFEPQIR-SIVGQI 400 (789)
Q Consensus 323 ~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~-~l~~i~~lVlDEah~m~~~~f~~~i~-~il~~~ 400 (789)
...++++..++|+.....+...+..+++|||+||++|.+.+....+ .+..+++|||||||++.+.+....+. .++...
T Consensus 321 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~ 400 (797)
T 4a2q_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 400 (797)
T ss_dssp GGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHH
T ss_pred ccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHh
Confidence 8889999999999987777777778899999999999999987776 78899999999999998765333332 222221
Q ss_pred ----CCCceEEEEeccCcH-----------HHHHHHHHH------------------hCCCeEEeeccccCcccc-----
Q 003887 401 ----RPDRQTLLFSATMPR-----------KVEKLAREI------------------LSDPVRVTVGEVGMANED----- 442 (789)
Q Consensus 401 ----~~~~q~ll~SATl~~-----------~v~~l~~~~------------------l~~p~~i~i~~~~~~~~~----- 442 (789)
.+..|+|+||||+.. .+..++..+ +..|....+.........
T Consensus 401 ~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (797)
T 4a2q_A 401 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 480 (797)
T ss_dssp HTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHH
T ss_pred hccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHH
Confidence 566899999999852 232222222 122211110000000000
Q ss_pred -------------------ceEEE--------------------------------------------------------
Q 003887 443 -------------------ITQVV-------------------------------------------------------- 447 (789)
Q Consensus 443 -------------------i~q~~-------------------------------------------------------- 447 (789)
+....
T Consensus 481 ~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 560 (797)
T 4a2q_A 481 SNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 560 (797)
T ss_dssp HHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 00000
Q ss_pred ---------------------------------------------EecCCCcchHHHHHHhcCCC---CCCCcEEEEecc
Q 003887 448 ---------------------------------------------HVIPSDAEKLPWLLEKLPGM---IDDGDVLVFASK 479 (789)
Q Consensus 448 ---------------------------------------------~~~~~~~~k~~~L~~~L~~~---~~~~kvLVF~~s 479 (789)
........|...|..+|... ....++||||++
T Consensus 561 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~ 640 (797)
T 4a2q_A 561 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 640 (797)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESS
T ss_pred cccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECc
Confidence 00000133555566665532 245799999999
Q ss_pred cccHHHHHHHHHHc------------CCceeeccCCCCHHHHHHHHHHhhc-CCccEEEeehhhhccCCCCCccEEEEEc
Q 003887 480 KTTVDEIESQLAQK------------GFKAAALHGDKDQASRMEILQKFKS-GVYHVLIATDVAARGLDIKSIKSVVNFD 546 (789)
Q Consensus 480 ~~~a~~l~~~L~~~------------g~~v~~lhg~~~~~eR~~~l~~F~~-G~~~VLVaT~v~~~GlDI~~v~~VI~~d 546 (789)
+..++.|+.+|... |..+..+||+|++.+|..+++.|++ |.++|||||+++++|||||+|++||+||
T Consensus 641 ~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd 720 (797)
T 4a2q_A 641 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYE 720 (797)
T ss_dssp HHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEES
T ss_pred HHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeC
Confidence 99999999999873 5567778899999999999999999 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccH
Q 003887 547 IARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (789)
Q Consensus 547 ~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~ 580 (789)
+|+|+..|+||+|| ||. +.|.|++|++..+.
T Consensus 721 ~p~s~~~~iQr~GR-GR~--~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 721 YSGNVTKMIQVRGR-GRA--AGSKCILVTSKTEV 751 (797)
T ss_dssp CCSCHHHHHTC----------CCCEEEEECCHHH
T ss_pred CCCCHHHHHHhcCC-CCC--CCceEEEEEeCCcH
Confidence 99999999999999 998 47999999988654
No 27
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=5.3e-43 Score=419.58 Aligned_cols=334 Identities=22% Similarity=0.321 Sum_probs=267.2
Q ss_pred CcccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEE
Q 003887 226 TFEDCG--FSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (789)
Q Consensus 226 sf~~~~--l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLI 303 (789)
+|++++ |++.+.+.+++.||..|+|+|.++++.+++++++|+++|||||||++|.++++..+.. +.++||
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~l~ 73 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK--------GGKSLY 73 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT--------TCCEEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh--------CCcEEE
Confidence 577787 9999999999999999999999999999999999999999999999999999988743 467999
Q ss_pred EcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccch
Q 003887 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (789)
Q Consensus 304 l~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~ 383 (789)
++|+++||.|+++.++++. ..++++..++|+...... ....++|+|+||++|..++.+....+.++++|||||||+
T Consensus 74 i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~ 149 (702)
T 2p6r_A 74 VVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHL 149 (702)
T ss_dssp EESSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGG
T ss_pred EeCcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeee
Confidence 9999999999999996554 358899999998765432 123689999999999999988766689999999999999
Q ss_pred hccCCChHHHHHHHhhc---CCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEE------EecCCC-
Q 003887 384 MFDLGFEPQIRSIVGQI---RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVV------HVIPSD- 453 (789)
Q Consensus 384 m~~~~f~~~i~~il~~~---~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~------~~~~~~- 453 (789)
+.++++...+..++..+ +++.|+|+||||+++ ...++.++.. +. +.... ....+...+ ......
T Consensus 150 l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~l~~-~~-~~~~~---r~~~l~~~~~~~~~~~~~~~~~ 223 (702)
T 2p6r_A 150 LDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEWLDA-DY-YVSDW---RPVPLVEGVLCEGTLELFDGAF 223 (702)
T ss_dssp GGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHHTTC-EE-EECCC---CSSCEEEEEECSSEEEEEETTE
T ss_pred cCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHHhCC-Cc-ccCCC---CCccceEEEeeCCeeeccCcch
Confidence 99988888888777665 578999999999985 4666665532 21 11111 111111111 111100
Q ss_pred -----cchHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHc------------------------------CCcee
Q 003887 454 -----AEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK------------------------------GFKAA 498 (789)
Q Consensus 454 -----~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~------------------------------g~~v~ 498 (789)
..+...+.+.+. ..+++||||+++..++.++..|... ++.+.
T Consensus 224 ~~~~~~~~~~~~~~~~~---~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~ 300 (702)
T 2p6r_A 224 STSRRVKFEELVEECVA---ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAA 300 (702)
T ss_dssp EEEEECCHHHHHHHHHH---TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCC
T ss_pred hhhhhhhHHHHHHHHHh---cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeE
Confidence 013444444443 4689999999999999999998753 24588
Q ss_pred eccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEE----Ec---CCCCHHHHHHHHhhcCCCC-CCCeE
Q 003887 499 ALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN----FD---IARDMDMHVHRIGRTGRAG-DKDGT 570 (789)
Q Consensus 499 ~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~----~d---~p~s~~~y~QriGR~gR~G-~~~G~ 570 (789)
.+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+||+||.| ...|.
T Consensus 301 ~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~ 380 (702)
T 2p6r_A 301 FHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGE 380 (702)
T ss_dssp EECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEE
T ss_pred EecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCce
Confidence 9999999999999999999999999999999999999999999998 77 7899999999999999998 34799
Q ss_pred EEEEEccccH
Q 003887 571 AYTLVTQKEA 580 (789)
Q Consensus 571 ~i~l~~~~d~ 580 (789)
|+++++..+.
T Consensus 381 ~~~l~~~~~~ 390 (702)
T 2p6r_A 381 AIIIVGKRDR 390 (702)
T ss_dssp EEEECCGGGH
T ss_pred EEEEecCccH
Confidence 9999988773
No 28
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=4.5e-42 Score=425.20 Aligned_cols=320 Identities=23% Similarity=0.303 Sum_probs=266.0
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHh
Q 003887 243 QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (789)
Q Consensus 243 ~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~ 322 (789)
.+| +|||+|.++++.++.++|+|++|+||||||++|+++++..+ ..++++|||+||++||.|+++.+++++
T Consensus 75 ~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~--------~~~~~~Lil~PtreLa~Q~~~~l~~l~ 145 (1104)
T 4ddu_A 75 FGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--------RKGKKSALVFPTVTLVKQTLERLQKLA 145 (1104)
T ss_dssp SSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH--------TTTCCEEEEESSHHHHHHHHHHHHTTS
T ss_pred cCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH--------hcCCeEEEEechHHHHHHHHHHHHHhh
Confidence 577 69999999999999999999999999999998888877765 347789999999999999999999977
Q ss_pred hhcCcEEEEEEcCCCh---HHHHHHHhcC-CcEEEeCHHHHHHHHhhccccccceeEEEEcccch----------hcc-C
Q 003887 323 KSHGIRVSAVYGGMSK---LDQFKELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR----------MFD-L 387 (789)
Q Consensus 323 ~~~~i~v~~~~gg~~~---~~~~~~l~~~-~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~----------m~~-~ 387 (789)
..++++.+++|+.+. ..++..+..+ ++|+|+||++|.+++.. +.+.++++|||||||+ |++ +
T Consensus 146 -~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~ 222 (1104)
T 4ddu_A 146 -DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMV 222 (1104)
T ss_dssp -CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTS
T ss_pred -CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhc
Confidence 668999999999987 6677778776 99999999999888764 6678999999999965 555 8
Q ss_pred CChHH-HHHHHhhcC-----------CCceEEEEecc-CcHHHH-HHHHHHhCCCeEEeeccccCccccceEEEEecCCC
Q 003887 388 GFEPQ-IRSIVGQIR-----------PDRQTLLFSAT-MPRKVE-KLAREILSDPVRVTVGEVGMANEDITQVVHVIPSD 453 (789)
Q Consensus 388 ~f~~~-i~~il~~~~-----------~~~q~ll~SAT-l~~~v~-~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~ 453 (789)
+|... +..++..++ ..+|+++|||| .|..+. .+...++. +.+.........+.+.+..+
T Consensus 223 gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~--- 295 (1104)
T 4ddu_A 223 GIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS--- 295 (1104)
T ss_dssp SCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESC---
T ss_pred CCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEec---
Confidence 99988 888988887 88999999999 565544 23344333 33334444556677766555
Q ss_pred cchHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCcee-eccCCCCHHHHHHHHHHhhcCCccEEEe----eh
Q 003887 454 AEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAA-ALHGDKDQASRMEILQKFKSGVYHVLIA----TD 528 (789)
Q Consensus 454 ~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~-~lhg~~~~~eR~~~l~~F~~G~~~VLVa----T~ 528 (789)
.+...|..+|.. ..+++||||+++..++.++..|...++.+. .+|| +|.+ ++.|++|+++|||| |+
T Consensus 296 -~k~~~L~~ll~~--~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~Td 366 (1104)
T 4ddu_A 296 -RSKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYG 366 (1104)
T ss_dssp -CCHHHHHHHHHH--HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHH
T ss_pred -CHHHHHHHHHHh--cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCC
Confidence 456666666655 247999999999999999999999999998 9999 2555 99999999999999 99
Q ss_pred hhhccCCCCC-ccEEEEEcCCC----------------------------------------------------------
Q 003887 529 VAARGLDIKS-IKSVVNFDIAR---------------------------------------------------------- 549 (789)
Q Consensus 529 v~~~GlDI~~-v~~VI~~d~p~---------------------------------------------------------- 549 (789)
++++|||||+ |++|||||+|.
T Consensus 367 vlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~ 446 (1104)
T 4ddu_A 367 KLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFR 446 (1104)
T ss_dssp HHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCC
T ss_pred eeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccc
Confidence 9999999999 99999999998
Q ss_pred --------------CHHHHHHHHhhcCCCCC---CCeEEEEEEccccHHHHHHHHHHHHH
Q 003887 550 --------------DMDMHVHRIGRTGRAGD---KDGTAYTLVTQKEARFAGELVNSLIA 592 (789)
Q Consensus 550 --------------s~~~y~QriGR~gR~G~---~~G~~i~l~~~~d~~~~~~l~~~L~~ 592 (789)
++.+|+||+|||||.|. ..|.+++++ +|...+..|.+.|..
T Consensus 447 ~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~--~d~~~~~~l~~~~~~ 504 (1104)
T 4ddu_A 447 GVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLL 504 (1104)
T ss_dssp SSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHH
T ss_pred eEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE--ecHHHHHHHHHHHhh
Confidence 78899999999999752 135555555 788888888887763
No 29
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.5e-41 Score=386.34 Aligned_cols=324 Identities=21% Similarity=0.242 Sum_probs=253.6
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003887 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (789)
Q Consensus 247 ~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~ 326 (789)
.|+|+|.+++++++.+ ++|++++||+|||++++++++..+. ..+.++|||||+++|+.||.+++.+++....
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~-------~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT-------KYGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH-------HSCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh-------cCCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 6999999999999999 9999999999999999999888764 2356799999999999999999999974334
Q ss_pred cEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcCCCceE
Q 003887 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 406 (789)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ 406 (789)
.++..++|+...... ..+...++|+|+||+.|...+....+.+.++++|||||||++.+......+...+....+..++
T Consensus 81 ~~v~~~~g~~~~~~~-~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~ 159 (494)
T 1wp9_A 81 EKIVALTGEKSPEER-SKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLV 159 (494)
T ss_dssp GGEEEECSCSCHHHH-HHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCE
T ss_pred hheEEeeCCcchhhh-hhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeE
Confidence 588888888776543 3344568999999999999988877888999999999999998765555666666666778999
Q ss_pred EEEeccCcHH---HHHHHHHHhCCCeEEeeccccCc-----cccceEEEE------------------------------
Q 003887 407 LLFSATMPRK---VEKLAREILSDPVRVTVGEVGMA-----NEDITQVVH------------------------------ 448 (789)
Q Consensus 407 ll~SATl~~~---v~~l~~~~l~~p~~i~i~~~~~~-----~~~i~q~~~------------------------------ 448 (789)
++||||+.+. +..++..+......+........ ...+.....
T Consensus 160 l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (494)
T 1wp9_A 160 IGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLL 239 (494)
T ss_dssp EEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred EEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999743 34444433222111110000000 000000000
Q ss_pred --------------------------------------------------------------------------------
Q 003887 449 -------------------------------------------------------------------------------- 448 (789)
Q Consensus 449 -------------------------------------------------------------------------------- 448 (789)
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 319 (494)
T 1wp9_A 240 ESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEI 319 (494)
T ss_dssp SCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred cccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhh
Confidence
Q ss_pred -----------------ecCCCcchHHHHHHhcCCC---CCCCcEEEEecccccHHHHHHHHHHcCCceeeccC------
Q 003887 449 -----------------VIPSDAEKLPWLLEKLPGM---IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHG------ 502 (789)
Q Consensus 449 -----------------~~~~~~~k~~~L~~~L~~~---~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg------ 502 (789)
.......|...|.++|... ....++||||+++..++.+++.|...++.+..+||
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~ 399 (494)
T 1wp9_A 320 FSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKEN 399 (494)
T ss_dssp HTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC--
T ss_pred hhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccc
Confidence 0002334566666666553 35679999999999999999999999999999999
Q ss_pred --CCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccH
Q 003887 503 --DKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (789)
Q Consensus 503 --~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~ 580 (789)
+++..+|..+++.|++|.++|||||+++++|||+|++++||+||+||++..|+||+||+||.|+ |.++.|+++.+.
T Consensus 400 ~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~--g~~~~l~~~~t~ 477 (494)
T 1wp9_A 400 DRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP--GRVIILMAKGTR 477 (494)
T ss_dssp -----CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC--SEEEEEEETTSH
T ss_pred cccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC--ceEEEEEecCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999993 999999998754
Q ss_pred H
Q 003887 581 R 581 (789)
Q Consensus 581 ~ 581 (789)
.
T Consensus 478 e 478 (494)
T 1wp9_A 478 D 478 (494)
T ss_dssp H
T ss_pred H
Confidence 3
No 30
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1.1e-42 Score=406.17 Aligned_cols=365 Identities=19% Similarity=0.249 Sum_probs=251.3
Q ss_pred CChhccCCCHHHHHHHHHHcCcccccCCCCCCCCCcccCCCCHHHHHHHHH-----cCCCCCcHHHHHHHHHHHcCCCEE
Q 003887 192 DSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISK-----QGYEKPTSIQCQALPIILSGRDII 266 (789)
Q Consensus 192 ~~~~i~~~s~~~~~~~r~~~~i~v~~~~~P~pi~sf~~~~l~~~l~~~l~~-----~g~~~ptpiQ~~ai~~il~grdvl 266 (789)
-.+.+..|+.+++.....++...+.... +++++ + +.....+.. .|. .|+|+|..+++.+++|+ |
T Consensus 23 le~~~~~lsd~eL~~kt~~fk~rl~~g~------~ld~~-l-peafA~vrea~~R~lg~-~p~~VQ~~~i~~ll~G~--I 91 (853)
T 2fsf_A 23 MEPEMEKLSDEELKGKTAEFRARLEKGE------VLENL-I-PEAFAVVREASKRVFGM-RHFDVQLLGGMVLNERC--I 91 (853)
T ss_dssp THHHHHHSCHHHHHHHHHHHHHHHHTTC------CHHHH-H-HHHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHSSE--E
T ss_pred hHHHHHhCCHHHHHHHHHHHHHHHHcCC------Chhhh-h-HHHHHHHHHHHHHHcCC-CCChHHHhhcccccCCe--e
Confidence 3456788888888776666544433211 12221 1 222222222 354 89999999999999998 9
Q ss_pred EEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHh
Q 003887 267 GIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK 346 (789)
Q Consensus 267 ~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~ 346 (789)
+.++||+|||++|++|++.+.+ .++.++||+||++||.|+++++..++..+++++.+++||.+.. .+.+.
T Consensus 92 aem~TGsGKTlaf~LP~l~~~l--------~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~--~r~~~ 161 (853)
T 2fsf_A 92 AEMRTGEGKTLTATLPAYLNAL--------TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAP--AKREA 161 (853)
T ss_dssp EECCTTSCHHHHHHHHHHHHHT--------TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHH--HHHHH
T ss_pred eeecCCchHHHHHHHHHHHHHH--------cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHH--HHHHh
Confidence 9999999999999999987653 2567999999999999999999999999999999999998764 34555
Q ss_pred cCCcEEEeCHHHH-HHHHhhc------cccccceeEEEEcccchhc-cCC---------------ChHHHHHHHhhcCC-
Q 003887 347 AGCEIVIATPGRL-IDMLKMK------ALTMSRVTYLVLDEADRMF-DLG---------------FEPQIRSIVGQIRP- 402 (789)
Q Consensus 347 ~~~dIiV~Tp~~L-~~~l~~~------~~~l~~i~~lVlDEah~m~-~~~---------------f~~~i~~il~~~~~- 402 (789)
.+++|+|+||++| .+++... .+.+..+.++||||||+|+ +.+ |...+..|+..+++
T Consensus 162 ~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~ 241 (853)
T 2fsf_A 162 YAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQ 241 (853)
T ss_dssp HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC---------------------
T ss_pred cCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchhh
Confidence 5799999999999 7887654 3567899999999999998 543 56778888887764
Q ss_pred -------------------CceEE------------------------EEeccCcH---HHHHH--HHHHhC--------
Q 003887 403 -------------------DRQTL------------------------LFSATMPR---KVEKL--AREILS-------- 426 (789)
Q Consensus 403 -------------------~~q~l------------------------l~SATl~~---~v~~l--~~~~l~-------- 426 (789)
.+|++ +||||.+. .+... +..++.
T Consensus 242 ~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~ 321 (853)
T 2fsf_A 242 EKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVK 321 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHHHHHHHHhhcCccceee
Confidence 46654 89999764 22211 111111
Q ss_pred CC-----------------------------eEEeeccccCccccceE--------------------------------
Q 003887 427 DP-----------------------------VRVTVGEVGMANEDITQ-------------------------------- 445 (789)
Q Consensus 427 ~p-----------------------------~~i~i~~~~~~~~~i~q-------------------------------- 445 (789)
++ ..+.+.....+...|++
T Consensus 322 d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~v 401 (853)
T 2fsf_A 322 DGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDT 401 (853)
T ss_dssp -----------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCEE
T ss_pred cCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCcE
Confidence 00 11111111111111111
Q ss_pred --------------EEEecCCCcchHHHHHHhcCCCC-CCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHH
Q 003887 446 --------------VVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRM 510 (789)
Q Consensus 446 --------------~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~ 510 (789)
...+......|+..|...+.... ...++||||+++..++.|+..|.+.|+++.+|||++.+.++.
T Consensus 402 v~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~ 481 (853)
T 2fsf_A 402 VVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAA 481 (853)
T ss_dssp EECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHH
T ss_pred EEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHH
Confidence 00122244568888888775432 346899999999999999999999999999999999988888
Q ss_pred HHHHHhhcCCccEEEeehhhhccCCCCC--------------------------------c-----cEEEEEcCCCCHHH
Q 003887 511 EILQKFKSGVYHVLIATDVAARGLDIKS--------------------------------I-----KSVVNFDIARDMDM 553 (789)
Q Consensus 511 ~~l~~F~~G~~~VLVaT~v~~~GlDI~~--------------------------------v-----~~VI~~d~p~s~~~ 553 (789)
.+...|+.| .|||||++++||+||+. | .+||+|+.|.+...
T Consensus 482 iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~ri 559 (853)
T 2fsf_A 482 IVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRI 559 (853)
T ss_dssp HHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHH
T ss_pred HHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHH
Confidence 888899988 69999999999999997 3 69999999999999
Q ss_pred HHHHHhhcCCCCCCCeEEEEEEccccH
Q 003887 554 HVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (789)
Q Consensus 554 y~QriGR~gR~G~~~G~~i~l~~~~d~ 580 (789)
|+||+||+||.| .+|.+++|++..|.
T Consensus 560 y~qr~GRTGRqG-d~G~s~~fls~eD~ 585 (853)
T 2fsf_A 560 DNQLRGRSGRQG-DAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHTTSSGGG-CCEEEEEEEETTSG
T ss_pred HHhhccccccCC-CCeeEEEEecccHH
Confidence 999999999999 78999999998774
No 31
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.3e-42 Score=430.10 Aligned_cols=324 Identities=20% Similarity=0.290 Sum_probs=264.7
Q ss_pred HHHH-HcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHH
Q 003887 238 HAIS-KQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYL 316 (789)
Q Consensus 238 ~~l~-~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~ 316 (789)
+.+. ..||. | |+|.++|+.++.++|+|++++||||||+ |++|++.++.. .++++|||+||++||.|+++
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~-------~~~~~lil~PtreLa~Q~~~ 117 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL-------KGKRCYVIFPTSLLVIQAAE 117 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT-------TSCCEEEEESCHHHHHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh-------cCCeEEEEeccHHHHHHHHH
Confidence 3343 46999 9 9999999999999999999999999998 89999988754 36789999999999999999
Q ss_pred HHHHHhhhcCc----EEEEEEcCCChHHH---HHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCC
Q 003887 317 ETKKFAKSHGI----RVSAVYGGMSKLDQ---FKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGF 389 (789)
Q Consensus 317 ~~~k~~~~~~i----~v~~~~gg~~~~~~---~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f 389 (789)
.+++++...++ ++.+++|+.+...+ ...+.. ++|+|+||++|.+++.+ |.++++|||||||+|++ |
T Consensus 118 ~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~ 190 (1054)
T 1gku_B 118 TIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--A 190 (1054)
T ss_dssp HHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--S
T ss_pred HHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--c
Confidence 99999988888 89999999887663 344455 99999999999997764 67899999999999998 5
Q ss_pred hHHHHHHHhhc-----------CCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHH
Q 003887 390 EPQIRSIVGQI-----------RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLP 458 (789)
Q Consensus 390 ~~~i~~il~~~-----------~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~ 458 (789)
...+..++..+ +..+|+++||||+++. ..++..++.++..+.+.........+.+.+. ...+..
T Consensus 191 ~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~----~~~k~~ 265 (1054)
T 1gku_B 191 SKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV----NDESIS 265 (1054)
T ss_dssp THHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE----SCCCTT
T ss_pred cccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe----chhHHH
Confidence 67777777665 3568999999999877 6555555555544444444444555666554 245566
Q ss_pred HHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEe----ehhhhccC
Q 003887 459 WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIA----TDVAARGL 534 (789)
Q Consensus 459 ~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVa----T~v~~~Gl 534 (789)
.|..++... .+++||||+++..|+.++..|... +.+..+||++. .+++.|++|+++|||| |+++++||
T Consensus 266 ~L~~ll~~~--~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGI 337 (1054)
T 1gku_B 266 TLSSILEKL--GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGL 337 (1054)
T ss_dssp TTHHHHTTS--CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCS
T ss_pred HHHHHHhhc--CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEecc
Confidence 666666654 578999999999999999999988 99999999983 7889999999999999 89999999
Q ss_pred CCCCc-cEEEEEcCC-----------------------------------------------------------------
Q 003887 535 DIKSI-KSVVNFDIA----------------------------------------------------------------- 548 (789)
Q Consensus 535 DI~~v-~~VI~~d~p----------------------------------------------------------------- 548 (789)
|+|+| ++||+||+|
T Consensus 338 Dip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 417 (1054)
T 1gku_B 338 DLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVR 417 (1054)
T ss_dssp CCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEE
T ss_pred ccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEe
Confidence 99995 999999999
Q ss_pred ------CCHHHHHHHHhhcCCCCCCCe--EEEEEEccccHHHHHHHHHHHHH
Q 003887 549 ------RDMDMHVHRIGRTGRAGDKDG--TAYTLVTQKEARFAGELVNSLIA 592 (789)
Q Consensus 549 ------~s~~~y~QriGR~gR~G~~~G--~~i~l~~~~d~~~~~~l~~~L~~ 592 (789)
.+...|+||+||+||.| +.| .+++|+...+...+..|.+.+..
T Consensus 418 ~~~~~~~~~~~yiQr~GRagR~g-~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 418 EGEVIFPDLRTYIQGSGRTSRLF-AGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp TTEEEEECHHHHHHHHHTTCCEE-TTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred ecceecCcHHHHhhhhchhhhcc-CCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 78999999999999987 445 47888888888888888888864
No 32
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-40 Score=407.47 Aligned_cols=318 Identities=19% Similarity=0.230 Sum_probs=255.5
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhh
Q 003887 244 GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (789)
Q Consensus 244 g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~ 323 (789)
+| .|+|+|.++++.+++++++|+++|||+|||++|+++++..+. .++++||++||++|+.|+++.+.+++.
T Consensus 84 ~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~--------~g~rvL~l~PtkaLa~Q~~~~l~~~~~ 154 (1010)
T 2xgj_A 84 PF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK--------NKQRVIYTSPIKALSNQKYRELLAEFG 154 (1010)
T ss_dssp SS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH--------TTCEEEEEESSHHHHHHHHHHHHHHHS
T ss_pred CC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc--------cCCeEEEECChHHHHHHHHHHHHHHhC
Confidence 45 499999999999999999999999999999999999888762 367899999999999999999998864
Q ss_pred hcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcCCC
Q 003887 324 SHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD 403 (789)
Q Consensus 324 ~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~ 403 (789)
.+..++|+..... .++|+|+||++|..++.+....+.++++|||||||+|.++++...+..++..+++.
T Consensus 155 ----~vglltGd~~~~~-------~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~ 223 (1010)
T 2xgj_A 155 ----DVGLMTGDITINP-------DAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDK 223 (1010)
T ss_dssp ----CEEEECSSCEECT-------TCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTT
T ss_pred ----CEEEEeCCCccCC-------CCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCC
Confidence 6777888765532 48999999999999998877789999999999999999999999999999999999
Q ss_pred ceEEEEeccCcHHHHHHHHH---HhCCCeEEeeccccCccccceEEEEecC---------CC------------------
Q 003887 404 RQTLLFSATMPRKVEKLARE---ILSDPVRVTVGEVGMANEDITQVVHVIP---------SD------------------ 453 (789)
Q Consensus 404 ~q~ll~SATl~~~v~~l~~~---~l~~p~~i~i~~~~~~~~~i~q~~~~~~---------~~------------------ 453 (789)
.|+|+||||+++.. .++.+ ....+..+...... ...+.+.+.... ..
T Consensus 224 ~~il~LSATi~n~~-e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 300 (1010)
T 2xgj_A 224 VRYVFLSATIPNAM-EFAEWICKIHSQPCHIVYTNFR--PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQ 300 (1010)
T ss_dssp CEEEEEECCCTTHH-HHHHHHHHHHTSCEEEEEECCC--SSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC--
T ss_pred CeEEEEcCCCCCHH-HHHHHHHhhcCCCeEEEecCCC--cccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhh
Confidence 99999999998753 34444 34556555443221 122333222111 00
Q ss_pred ---------------------------cchHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCc----------
Q 003887 454 ---------------------------AEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFK---------- 496 (789)
Q Consensus 454 ---------------------------~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~---------- 496 (789)
...+..++..+... ...++||||+++..|+.++..|...++.
T Consensus 301 ~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~ 379 (1010)
T 2xgj_A 301 IGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK-KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTK 379 (1010)
T ss_dssp ----------------------------CHHHHHHHHHHHH-TCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHH
T ss_pred hcccccccccccccccccccccccccchHHHHHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHH
Confidence 11122233333221 2348999999999999999998764442
Q ss_pred -----------------------------eeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEE---
Q 003887 497 -----------------------------AAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN--- 544 (789)
Q Consensus 497 -----------------------------v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~--- 544 (789)
+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+
T Consensus 380 ~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~ 459 (1010)
T 2xgj_A 380 IFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVR 459 (1010)
T ss_dssp HHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSE
T ss_pred HHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCc
Confidence 788999999999999999999999999999999999999999999999
Q ss_pred -EcC----CCCHHHHHHHHhhcCCCCC-CCeEEEEEEccc-cHHHHHH
Q 003887 545 -FDI----ARDMDMHVHRIGRTGRAGD-KDGTAYTLVTQK-EARFAGE 585 (789)
Q Consensus 545 -~d~----p~s~~~y~QriGR~gR~G~-~~G~~i~l~~~~-d~~~~~~ 585 (789)
||. |.++..|+||+||+||.|. ..|.|++|+++. +...+..
T Consensus 460 kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~ 507 (1010)
T 2xgj_A 460 KWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKG 507 (1010)
T ss_dssp EECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHH
T ss_pred ccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHH
Confidence 999 8999999999999999993 369999999875 4444433
No 33
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=2.5e-41 Score=415.14 Aligned_cols=332 Identities=20% Similarity=0.212 Sum_probs=213.2
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHh
Q 003887 243 QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (789)
Q Consensus 243 ~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~ 322 (789)
.++..|+|+|.+++++++.++++|++++||+|||++|++|++.++...+. ..++++|||+||++|+.||++++++++
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~---~~~~~vLvl~Pt~~L~~Q~~~~~~~~~ 320 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA---GRKAKVVFLATKVPVYEQQKNVFKHHF 320 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCS---SCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccc---cCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 35789999999999999999999999999999999999999887755421 236779999999999999999999999
Q ss_pred hhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccc-cccceeEEEEcccchhccCCChHHHH-HHHhh-
Q 003887 323 KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL-TMSRVTYLVLDEADRMFDLGFEPQIR-SIVGQ- 399 (789)
Q Consensus 323 ~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~-~l~~i~~lVlDEah~m~~~~f~~~i~-~il~~- 399 (789)
...++++..++|+.....+...+..+++|||+||++|.+.+....+ .+..+++|||||||++...+....+. .++..
T Consensus 321 ~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~ 400 (936)
T 4a2w_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 400 (936)
T ss_dssp HTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHH
T ss_pred cccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHh
Confidence 8889999999999877666666667799999999999999987766 78899999999999998765333322 22222
Q ss_pred ---cCCCceEEEEeccCcH-----------HHHHHHHH------------------HhCCCeEEeeccccCccc------
Q 003887 400 ---IRPDRQTLLFSATMPR-----------KVEKLARE------------------ILSDPVRVTVGEVGMANE------ 441 (789)
Q Consensus 400 ---~~~~~q~ll~SATl~~-----------~v~~l~~~------------------~l~~p~~i~i~~~~~~~~------ 441 (789)
..+..|+++||||+.. .+..+... ++..|.............
T Consensus 401 ~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l 480 (936)
T 4a2w_A 401 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 480 (936)
T ss_dssp HTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHH
T ss_pred hccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHH
Confidence 1556899999999852 22222221 222222111100000000
Q ss_pred ------------cc------eEEE-E------------------------------------------------------
Q 003887 442 ------------DI------TQVV-H------------------------------------------------------ 448 (789)
Q Consensus 442 ------------~i------~q~~-~------------------------------------------------------ 448 (789)
.+ .+.. .
T Consensus 481 ~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~ 560 (936)
T 4a2w_A 481 SNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 560 (936)
T ss_dssp HHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 00 0000 0
Q ss_pred ----------------------------------------------ecCCCcchHHHHHHhcCCC---CCCCcEEEEecc
Q 003887 449 ----------------------------------------------VIPSDAEKLPWLLEKLPGM---IDDGDVLVFASK 479 (789)
Q Consensus 449 ----------------------------------------------~~~~~~~k~~~L~~~L~~~---~~~~kvLVF~~s 479 (789)
.......|...|.++|... ....++||||++
T Consensus 561 ~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t 640 (936)
T 4a2w_A 561 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 640 (936)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESS
T ss_pred chhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCC
Confidence 0000233555555555543 245799999999
Q ss_pred cccHHHHHHHHHHc------------CCceeeccCCCCHHHHHHHHHHhhc-CCccEEEeehhhhccCCCCCccEEEEEc
Q 003887 480 KTTVDEIESQLAQK------------GFKAAALHGDKDQASRMEILQKFKS-GVYHVLIATDVAARGLDIKSIKSVVNFD 546 (789)
Q Consensus 480 ~~~a~~l~~~L~~~------------g~~v~~lhg~~~~~eR~~~l~~F~~-G~~~VLVaT~v~~~GlDI~~v~~VI~~d 546 (789)
+..++.|+.+|... |..+..+||+|++.+|..+++.|++ |.++|||||+++++|||||+|++||+||
T Consensus 641 ~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD 720 (936)
T 4a2w_A 641 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYE 720 (936)
T ss_dssp HHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEES
T ss_pred HHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeC
Confidence 99999999999986 5556677889999999999999999 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccH
Q 003887 547 IARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (789)
Q Consensus 547 ~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~ 580 (789)
+|+|+..|+||+|| ||. +.|.+++|++..+.
T Consensus 721 ~p~s~~~~iQr~GR-GR~--~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 721 YSGNVTKMIQVRGR-GRA--AGSKCILVTSKTEV 751 (936)
T ss_dssp CCSCSHHHHCC----------CCCEEEEESCHHH
T ss_pred CCCCHHHHHHhcCC-CCC--CCCEEEEEEeCCCH
Confidence 99999999999999 998 47999999987654
No 34
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=3e-41 Score=394.38 Aligned_cols=325 Identities=19% Similarity=0.247 Sum_probs=257.7
Q ss_pred HcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003887 242 KQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 242 ~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~ 321 (789)
..|+ .|+++|..++|.+++|+ |+.++||+|||++|++|++...+. ++.|+||+||++||.|+++++..+
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~--------g~~v~VvTpTreLA~Qdae~m~~l 175 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA--------GNGVHIVTVNDYLAKRDSEWMGRV 175 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT--------TSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHHHHHH
Confidence 3588 99999999999999998 999999999999999999765532 456999999999999999999999
Q ss_pred hhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHH-HHHHhhc------cccccceeEEEEcccchhc-cC------
Q 003887 322 AKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMK------ALTMSRVTYLVLDEADRMF-DL------ 387 (789)
Q Consensus 322 ~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L-~~~l~~~------~~~l~~i~~lVlDEah~m~-~~------ 387 (789)
...+++++.+++||.+... +.+..++||+|+||++| .++|... .+.+..+.++||||||+|+ +.
T Consensus 176 ~~~lGLsv~~i~gg~~~~~--r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLi 253 (922)
T 1nkt_A 176 HRFLGLQVGVILATMTPDE--RRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLI 253 (922)
T ss_dssp HHHTTCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEE
T ss_pred HhhcCCeEEEEeCCCCHHH--HHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCcccee
Confidence 9999999999999987543 34444699999999999 7877654 4667889999999999998 43
Q ss_pred ---------CChHHHHHHHhhcC---------CCceEE-----------------EEeccCcH---HHHHHH--HHHhC-
Q 003887 388 ---------GFEPQIRSIVGQIR---------PDRQTL-----------------LFSATMPR---KVEKLA--REILS- 426 (789)
Q Consensus 388 ---------~f~~~i~~il~~~~---------~~~q~l-----------------l~SATl~~---~v~~l~--~~~l~- 426 (789)
+|...+..++..++ +.+|++ +||||++. .+...+ ..++.
T Consensus 254 iSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~ 333 (922)
T 1nkt_A 254 ISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSR 333 (922)
T ss_dssp EEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCB
T ss_pred ecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhc
Confidence 47788999999997 678998 99999864 333322 22332
Q ss_pred C-------CeEEeeccc-----------------------------cCccccceE-------------------------
Q 003887 427 D-------PVRVTVGEV-----------------------------GMANEDITQ------------------------- 445 (789)
Q Consensus 427 ~-------p~~i~i~~~-----------------------------~~~~~~i~q------------------------- 445 (789)
+ ...+.+... ..+...|.+
T Consensus 334 d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~ 413 (922)
T 1nkt_A 334 DKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELH 413 (922)
T ss_dssp TTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHH
T ss_pred ccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHH
Confidence 1 111111100 000001110
Q ss_pred ---------------------EEEecCCCcchHHHHHHhcCCCC-CCCcEEEEecccccHHHHHHHHHHcCCceeeccCC
Q 003887 446 ---------------------VVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGD 503 (789)
Q Consensus 446 ---------------------~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~ 503 (789)
...+......|+..|+..+.... ...++||||++++.++.|+..|.+.|+++.+|||+
T Consensus 414 ~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak 493 (922)
T 1nkt_A 414 EIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAK 493 (922)
T ss_dssp HHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSS
T ss_pred HHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCC
Confidence 00112234567777877775432 34589999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCc--------------------------------------------
Q 003887 504 KDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSI-------------------------------------------- 539 (789)
Q Consensus 504 ~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v-------------------------------------------- 539 (789)
+.+.++..+...|+.| .|||||++++||+||+.+
T Consensus 494 ~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (922)
T 1nkt_A 494 YHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEA 571 (922)
T ss_dssp CHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred hhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhh
Confidence 9888888788888887 699999999999999975
Q ss_pred --------cEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHH
Q 003887 540 --------KSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARF 582 (789)
Q Consensus 540 --------~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~ 582 (789)
.+||+|+.|.+...|+||+||+||.| .+|.+++|++..|.-+
T Consensus 572 ~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqG-dpG~s~fflSleD~l~ 621 (922)
T 1nkt_A 572 KEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQG-DPGESRFYLSLGDELM 621 (922)
T ss_dssp HHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGG-CCEEEEEEEETTSHHH
T ss_pred hHHHhcCCcEEEeccCCCCHHHHHHHhcccccCC-CCeeEEEEechhHHHH
Confidence 59999999999999999999999999 7899999999887643
No 35
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.2e-41 Score=402.44 Aligned_cols=346 Identities=20% Similarity=0.250 Sum_probs=259.8
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHcC------CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCc
Q 003887 234 TQLMHAISKQGYEKPTSIQCQALPIILSG------RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (789)
Q Consensus 234 ~~l~~~l~~~g~~~ptpiQ~~ai~~il~g------rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PT 307 (789)
..+.+.+...+| .||++|.++++.++.+ +++|++++||||||++|++|++..+. .+.++|||+||
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~--------~g~qvlvlaPt 426 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE--------AGFQTAFMVPT 426 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH--------HTSCEEEECSC
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHH--------cCCeEEEEeCc
Confidence 344555677899 9999999999999875 59999999999999999999998873 35779999999
Q ss_pred HHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHH---HHHHhcC-CcEEEeCHHHHHHHHhhccccccceeEEEEcccch
Q 003887 308 RELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ---FKELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (789)
Q Consensus 308 reLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~---~~~l~~~-~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~ 383 (789)
++||.|+++.+.+++...++++.+++|+...... +..+..+ ++|+|+||+.|.+ ...+.++++|||||+|+
T Consensus 427 r~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr 501 (780)
T 1gm5_A 427 SILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHR 501 (780)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCC
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccch
Confidence 9999999999999998888999999999876553 3445554 9999999987754 45688999999999999
Q ss_pred hccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHHHHh
Q 003887 384 MFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463 (789)
Q Consensus 384 m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~ 463 (789)
+.. ..+..+......+|+++||||+.+... ...++.+.....+.........+...+ + ...+...+++.
T Consensus 502 ~g~-----~qr~~l~~~~~~~~vL~mSATp~p~tl--~~~~~g~~~~s~i~~~p~~r~~i~~~~--~--~~~~~~~l~~~ 570 (780)
T 1gm5_A 502 FGV-----KQREALMNKGKMVDTLVMSATPIPRSM--ALAFYGDLDVTVIDEMPPGRKEVQTML--V--PMDRVNEVYEF 570 (780)
T ss_dssp C----------CCCCSSSSCCCEEEEESSCCCHHH--HHHHTCCSSCEEECCCCSSCCCCEECC--C--CSSTHHHHHHH
T ss_pred hhH-----HHHHHHHHhCCCCCEEEEeCCCCHHHH--HHHHhCCcceeeeeccCCCCcceEEEE--e--ccchHHHHHHH
Confidence 532 122233333457899999999866543 333444433233322222222333221 1 22334444444
Q ss_pred cCCC-CCCCcEEEEecccc--------cHHHHHHHHHH---cCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhh
Q 003887 464 LPGM-IDDGDVLVFASKKT--------TVDEIESQLAQ---KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAA 531 (789)
Q Consensus 464 L~~~-~~~~kvLVF~~s~~--------~a~~l~~~L~~---~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~ 531 (789)
+... ...++++|||+..+ .++.+++.|.. .++.+..+||+|++.+|..+++.|++|+++|||||++++
T Consensus 571 i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie 650 (780)
T 1gm5_A 571 VRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIE 650 (780)
T ss_dssp HHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCC
T ss_pred HHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence 4432 24568999999764 46788888887 478999999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEEcCCC-CHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 003887 532 RGLDIKSIKSVVNFDIAR-DMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAM 606 (789)
Q Consensus 532 ~GlDI~~v~~VI~~d~p~-s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~L~~~~~~vp~~l~~~a~ 606 (789)
+|+|+|++++||++++|. +...|.||+||+||.| +.|.|++++++.+. .....++.+....+.+.....++..
T Consensus 651 ~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g-~~g~~ill~~~~~~-~~~~rl~~l~~~~dgf~iae~dL~~ 724 (780)
T 1gm5_A 651 VGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGG-QEAYCFLVVGDVGE-EAMERLRFFTLNTDGFKIAEYDLKT 724 (780)
T ss_dssp SCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSS-TTCEEECCCCSCCH-HHHHHHHHHHTCCCSHHHHHHHHHS
T ss_pred ccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCC-CCCEEEEEECCCCh-HHHHHHHHHHhhhccchhhHhhHhc
Confidence 999999999999999996 6888999999999998 67999999884433 3445566777777776655555543
No 36
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.7e-41 Score=406.58 Aligned_cols=324 Identities=23% Similarity=0.294 Sum_probs=228.4
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHH-HHHHHHHhhh
Q 003887 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI-YLETKKFAKS 324 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi-~~~~~k~~~~ 324 (789)
.+|+|+|.+++++++.++++|++++||+|||++|++|++.++...+. ...++++|||+||++|+.|| ++++++++..
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH--HTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc--cCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 47999999999999999999999999999999999999988765321 12236799999999999999 9999999864
Q ss_pred cCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHH------hhccccccceeEEEEcccchhccCCChHHHH-HHH
Q 003887 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDML------KMKALTMSRVTYLVLDEADRMFDLGFEPQIR-SIV 397 (789)
Q Consensus 325 ~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l------~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~-~il 397 (789)
++++..++|+.........+...++|||+||++|...+ ....+.+..+++|||||||++....+...+. .++
T Consensus 84 -~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l 162 (699)
T 4gl2_A 84 -WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYL 162 (699)
T ss_dssp -TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHH
T ss_pred -CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHH
Confidence 48999999998776666667778999999999999888 4455678899999999999986654333333 222
Q ss_pred hh----cC---------CCceEEEEeccCcHH-----------HHHHHHHHhCCCeEEeecccc----CccccceEEEEe
Q 003887 398 GQ----IR---------PDRQTLLFSATMPRK-----------VEKLAREILSDPVRVTVGEVG----MANEDITQVVHV 449 (789)
Q Consensus 398 ~~----~~---------~~~q~ll~SATl~~~-----------v~~l~~~~l~~p~~i~i~~~~----~~~~~i~q~~~~ 449 (789)
.. .. +..|+|+||||+... +..++..+-...+........ ...... ..+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~-~~~~~ 241 (699)
T 4gl2_A 163 MQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPC-KKFAI 241 (699)
T ss_dssp HHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCE-EEEEE
T ss_pred HhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCc-eEEEE
Confidence 22 11 678999999999862 222322222100000000000 000000 00000
Q ss_pred cC------------------------------------------------------------------------------
Q 003887 450 IP------------------------------------------------------------------------------ 451 (789)
Q Consensus 450 ~~------------------------------------------------------------------------------ 451 (789)
+.
T Consensus 242 ~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 321 (699)
T 4gl2_A 242 ADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMID 321 (699)
T ss_dssp EC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred cccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00
Q ss_pred --------------------------------------------------------CCcchHHHHHHhcCCCC---C-CC
Q 003887 452 --------------------------------------------------------SDAEKLPWLLEKLPGMI---D-DG 471 (789)
Q Consensus 452 --------------------------------------------------------~~~~k~~~L~~~L~~~~---~-~~ 471 (789)
....|...|.++|.... . .+
T Consensus 322 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~ 401 (699)
T 4gl2_A 322 AYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESA 401 (699)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCC
Confidence 01122222233332211 1 67
Q ss_pred cEEEEecccccHHHHHHHHHHc------CCceeeccCC--------CCHHHHHHHHHHhhcCCccEEEeehhhhccCCCC
Q 003887 472 DVLVFASKKTTVDEIESQLAQK------GFKAAALHGD--------KDQASRMEILQKFKSGVYHVLIATDVAARGLDIK 537 (789)
Q Consensus 472 kvLVF~~s~~~a~~l~~~L~~~------g~~v~~lhg~--------~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~ 537 (789)
++||||+++..++.|+..|... |+.+..+||+ |++.+|..+++.|++|+++|||||+++++|||+|
T Consensus 402 ~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip 481 (699)
T 4gl2_A 402 RGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIK 481 (699)
T ss_dssp CEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCC
T ss_pred cEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccc
Confidence 9999999999999999999987 8999999999 9999999999999999999999999999999999
Q ss_pred CccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEcc
Q 003887 538 SIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (789)
Q Consensus 538 ~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~ 577 (789)
+|++||+||+|+|+..|+||+||+||.| .+++|+..
T Consensus 482 ~v~~VI~~d~p~s~~~~~Qr~GRArr~g----~~~~l~~~ 517 (699)
T 4gl2_A 482 ECNIVIRYGLVTNEIAMVQARGRARADE----STYVLVAH 517 (699)
T ss_dssp SCCCCEEESCCCCHHHHHHHHTTSCSSS----CEEEEEEE
T ss_pred cCCEEEEeCCCCCHHHHHHHcCCCCCCC----ceEEEEEe
Confidence 9999999999999999999999976543 44444444
No 37
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=4.1e-39 Score=335.51 Aligned_cols=238 Identities=47% Similarity=0.841 Sum_probs=223.0
Q ss_pred CCHHHHHHHHHHcCcccccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHH
Q 003887 199 MSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 199 ~s~~~~~~~r~~~~i~v~~~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla 278 (789)
++.+++..+++...+.+.+...|+|+.+|.++++++.+++.|.+.||..|+|+|.++++.+++++++++++|||+|||++
T Consensus 3 ~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~ 82 (242)
T 3fe2_A 3 RTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 82 (242)
T ss_dssp ---CHHHHHHHHHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHH
T ss_pred CCHHHHHHHHhcCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHH
Q 003887 279 FVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGR 358 (789)
Q Consensus 279 ~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~ 358 (789)
|++|++.++...+......++++|||+||++|+.|+++.+++++...++++.+++||.....+...+..+++|+|+||++
T Consensus 83 ~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~ 162 (242)
T 3fe2_A 83 YLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 162 (242)
T ss_dssp HHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHH
T ss_pred HHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHH
Confidence 99999999987665555678899999999999999999999999988999999999999999988898999999999999
Q ss_pred HHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccc
Q 003887 359 LIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEV 436 (789)
Q Consensus 359 L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~ 436 (789)
|.+++......+.++++|||||||+|++++|...+..++..+++.+|+++||||+|+.+..+++.++.+|+.+.++..
T Consensus 163 l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 163 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp HHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred HHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 999998888889999999999999999999999999999999999999999999999999999999999999988643
No 38
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=2.3e-38 Score=394.36 Aligned_cols=337 Identities=18% Similarity=0.233 Sum_probs=262.1
Q ss_pred CCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHHc----CC--CEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEE
Q 003887 230 CGFSTQLMHAISK-QGYEKPTSIQCQALPIILS----GR--DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (789)
Q Consensus 230 ~~l~~~l~~~l~~-~g~~~ptpiQ~~ai~~il~----gr--dvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vL 302 (789)
+.++..+.+.+.. .+|. |||+|.++++.++. ++ ++|++++||+|||++|+++++..+. .++++|
T Consensus 586 ~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~--------~g~~vl 656 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD--------NHKQVA 656 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT--------TTCEEE
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH--------hCCeEE
Confidence 3566777777654 4664 79999999999986 65 9999999999999999999887653 367899
Q ss_pred EEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHH---HHHHhcC-CcEEEeCHHHHHHHHhhccccccceeEEEE
Q 003887 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ---FKELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVL 378 (789)
Q Consensus 303 Il~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~---~~~l~~~-~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVl 378 (789)
|||||++||.||++.+.+++...++++..+++....... +..+..+ ++|+|+||+.|. ..+.+.++++|||
T Consensus 657 vlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 657 VLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIV 731 (1151)
T ss_dssp EECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEE
T ss_pred EEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEE
Confidence 999999999999999999888778899888887665443 3445554 999999997663 3456889999999
Q ss_pred cccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHH
Q 003887 379 DEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLP 458 (789)
Q Consensus 379 DEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~ 458 (789)
||||+ |......++..++...++++||||+++....++...+.++..+.. .......+...+... .+..
T Consensus 732 DEaH~-----~g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~--~~~~r~~i~~~~~~~----~~~~ 800 (1151)
T 2eyq_A 732 DEEHR-----FGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIAT--PPARRLAVKTFVREY----DSMV 800 (1151)
T ss_dssp ESGGG-----SCHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCC--CCCBCBCEEEEEEEC----CHHH
T ss_pred echHh-----cChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEec--CCCCccccEEEEecC----CHHH
Confidence 99999 455667777788888999999999877766555555444333221 222222333333322 1222
Q ss_pred HHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHc--CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCC
Q 003887 459 WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDI 536 (789)
Q Consensus 459 ~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~--g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI 536 (789)
.+..++......+++||||+++..++.+++.|.+. ++.+..+||+|++.+|+.+++.|++|+++|||||+++++||||
T Consensus 801 i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDi 880 (1151)
T 2eyq_A 801 VREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI 880 (1151)
T ss_dssp HHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCC
T ss_pred HHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecc
Confidence 22222233335689999999999999999999987 7899999999999999999999999999999999999999999
Q ss_pred CCccEEEEEcC-CCCHHHHHHHHhhcCCCCCCCeEEEEEEcccc--HHHHHHHHHHHHH
Q 003887 537 KSIKSVVNFDI-ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE--ARFAGELVNSLIA 592 (789)
Q Consensus 537 ~~v~~VI~~d~-p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d--~~~~~~l~~~L~~ 592 (789)
|++++||+++. ++++..|+||+||+||.| +.|.||+++.+.+ ...+.+.+..+..
T Consensus 881 p~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g-~~g~~~ll~~~~~~l~~~~~~rl~~i~~ 938 (1151)
T 2eyq_A 881 PTANTIIIERADHFGLAQLHQLRGRVGRSH-HQAYAWLLTPHPKAMTTDAQKRLEAIAS 938 (1151)
T ss_dssp TTEEEEEETTTTSSCHHHHHHHHTTCCBTT-BCEEEEEEECCGGGSCHHHHHHHHHHTT
T ss_pred cCCcEEEEeCCCCCCHHHHHHHHhccCcCC-CceEEEEEECCccccCHHHHHHHHHHHH
Confidence 99999999998 579999999999999999 6799999987643 2333344444433
No 39
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=3.6e-39 Score=396.08 Aligned_cols=308 Identities=20% Similarity=0.232 Sum_probs=245.3
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003887 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (789)
Q Consensus 247 ~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~ 326 (789)
.|+|+|.++|+.+++++++|++++||+|||++|+++++..+ ..++++||++||++|+.|+++.+.+++. +
T Consensus 39 ~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~--------~~g~~vlvl~PtraLa~Q~~~~l~~~~~--~ 108 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAH--------RNMTKTIYTSPIKALSNQKFRDFKETFD--D 108 (997)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHH--------HTTCEEEEEESCGGGHHHHHHHHHTTC----
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHH--------hcCCeEEEEeCCHHHHHHHHHHHHHHcC--C
Confidence 58999999999999999999999999999999999988765 2467899999999999999999998754 6
Q ss_pred cEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcCCCceE
Q 003887 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 406 (789)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ 406 (789)
+++..++|+..... .++|+|+||++|..++......+..+++|||||||++.+++|...+..++..+++..|+
T Consensus 109 ~~v~~l~G~~~~~~-------~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~i 181 (997)
T 4a4z_A 109 VNIGLITGDVQINP-------DANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKF 181 (997)
T ss_dssp CCEEEECSSCEECT-------TSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEE
T ss_pred CeEEEEeCCCccCC-------CCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCE
Confidence 78888998876442 48999999999999998887788999999999999999999999999999999999999
Q ss_pred EEEeccCcHHHHHHHHHHhC---CCeEEeeccccCccccceEEEE-----------------------------------
Q 003887 407 LLFSATMPRKVEKLAREILS---DPVRVTVGEVGMANEDITQVVH----------------------------------- 448 (789)
Q Consensus 407 ll~SATl~~~v~~l~~~~l~---~p~~i~i~~~~~~~~~i~q~~~----------------------------------- 448 (789)
|+||||+++.. .++.++.. .+..+.... .....+.+.+.
T Consensus 182 IlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~--~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 258 (997)
T 4a4z_A 182 ILLSATVPNTY-EFANWIGRTKQKNIYVISTP--KRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGA 258 (997)
T ss_dssp EEEECCCTTHH-HHHHHHHHHHTCCEEEEECS--SCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-------
T ss_pred EEEcCCCCChH-HHHHHHhcccCCceEEEecC--CCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccc
Confidence 99999998654 55655532 222221111 11111111110
Q ss_pred ---------------------------------------------------------ecCCCcchHHHHHHhcCCCCCCC
Q 003887 449 ---------------------------------------------------------VIPSDAEKLPWLLEKLPGMIDDG 471 (789)
Q Consensus 449 ---------------------------------------------------------~~~~~~~k~~~L~~~L~~~~~~~ 471 (789)
.......++..|+..+... ...
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~-~~~ 337 (997)
T 4a4z_A 259 PSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR-ELL 337 (997)
T ss_dssp ----------------------------------------------------------CCCCTTHHHHHHHHHHHT-TCC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhC-CCC
Confidence 0001122344555555432 346
Q ss_pred cEEEEecccccHHHHHHHHHHcCC---------------------------------------ceeeccCCCCHHHHHHH
Q 003887 472 DVLVFASKKTTVDEIESQLAQKGF---------------------------------------KAAALHGDKDQASRMEI 512 (789)
Q Consensus 472 kvLVF~~s~~~a~~l~~~L~~~g~---------------------------------------~v~~lhg~~~~~eR~~~ 512 (789)
++||||+++..|+.++..|...++ .+..+||+|++.+|..+
T Consensus 338 ~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v 417 (997)
T 4a4z_A 338 PMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELI 417 (997)
T ss_dssp SEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHH
Confidence 999999999999999999976555 47899999999999999
Q ss_pred HHHhhcCCccEEEeehhhhccCCCCCccEEEEEcCCC---------CHHHHHHHHhhcCCCC-CCCeEEEEEEc
Q 003887 513 LQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIAR---------DMDMHVHRIGRTGRAG-DKDGTAYTLVT 576 (789)
Q Consensus 513 l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~---------s~~~y~QriGR~gR~G-~~~G~~i~l~~ 576 (789)
++.|++|.++|||||+++++|||+|+ ..||+++.+. ++..|+||+||+||.| ...|.|++++.
T Consensus 418 ~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 418 EILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp HHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECC
T ss_pred HHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecC
Confidence 99999999999999999999999999 5555544444 9999999999999998 45788988883
No 40
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=7e-38 Score=400.53 Aligned_cols=344 Identities=15% Similarity=0.203 Sum_probs=264.3
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC-CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHH
Q 003887 232 FSTQLMHAISKQGYEKPTSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTREL 310 (789)
Q Consensus 232 l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~g-rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreL 310 (789)
|.....+.|...+|..++|+|.++++.++.+ ++++++||||||||++|.+|++.++... .+.++|||+||++|
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~------~~~kavyi~P~raL 984 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS------SEGRCVYITPMEAL 984 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC------TTCCEEEECSCHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC------CCCEEEEEcChHHH
Confidence 4566778888889999999999999999864 6899999999999999999999998654 35679999999999
Q ss_pred HHHHHHHHHH-HhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhh--ccccccceeEEEEcccchhccC
Q 003887 311 AHQIYLETKK-FAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM--KALTMSRVTYLVLDEADRMFDL 387 (789)
Q Consensus 311 a~Qi~~~~~k-~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~--~~~~l~~i~~lVlDEah~m~~~ 387 (789)
|.|+++.+++ |....+++|..++|+..... .....++|+||||++|..++.+ ....+.++++|||||+|.|.+.
T Consensus 985 a~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~---~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~ 1061 (1724)
T 4f92_B 985 AEQVYMDWYEKFQDRLNKKVVLLTGETSTDL---KLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE 1061 (1724)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEECCSCHHHHH---HHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST
T ss_pred HHHHHHHHHHHhchhcCCEEEEEECCCCcch---hhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC
Confidence 9999999876 45567899998888754322 2234589999999999887764 2335789999999999988774
Q ss_pred CChHHHHHHHh-------hcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcch----
Q 003887 388 GFEPQIRSIVG-------QIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEK---- 456 (789)
Q Consensus 388 ~f~~~i~~il~-------~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k---- 456 (789)
....+..++. .+++..|+|+||||+++ ..+++.|+...+..+..-........+...+.........
T Consensus 1062 -rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~ 1139 (1724)
T 4f92_B 1062 -NGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLL 1139 (1724)
T ss_dssp -THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHH
T ss_pred -CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhh
Confidence 5555554443 34578999999999985 5788888765543332222222333344444433322111
Q ss_pred --HHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHc----------------------------------CCceeec
Q 003887 457 --LPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK----------------------------------GFKAAAL 500 (789)
Q Consensus 457 --~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~----------------------------------g~~v~~l 500 (789)
...+...+......+++||||+++..|+.++..|... ...++.+
T Consensus 1140 ~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~h 1219 (1724)
T 4f92_B 1140 SMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYL 1219 (1724)
T ss_dssp TTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEE
T ss_pred hhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEE
Confidence 1122333444445679999999999999888776431 2358899
Q ss_pred cCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEE----Ec------CCCCHHHHHHHHhhcCCCC-CCCe
Q 003887 501 HGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN----FD------IARDMDMHVHRIGRTGRAG-DKDG 569 (789)
Q Consensus 501 hg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~----~d------~p~s~~~y~QriGR~gR~G-~~~G 569 (789)
|++|++.+|..+.+.|++|.++|||||+++++|||+|...+||. || .|.++.+|+||+|||||.| ...|
T Consensus 1220 HagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G 1299 (1724)
T 4f92_B 1220 HEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEG 1299 (1724)
T ss_dssp CTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCE
T ss_pred CCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCce
Confidence 99999999999999999999999999999999999999888883 33 3568999999999999999 3479
Q ss_pred EEEEEEccccHHHHHHH
Q 003887 570 TAYTLVTQKEARFAGEL 586 (789)
Q Consensus 570 ~~i~l~~~~d~~~~~~l 586 (789)
.|++|+.+.+..++..+
T Consensus 1300 ~avll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1300 RCVIMCQGSKKDFFKKF 1316 (1724)
T ss_dssp EEEEEEEGGGHHHHHHH
T ss_pred EEEEEecchHHHHHHHH
Confidence 99999998887776654
No 41
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=4.2e-40 Score=385.83 Aligned_cols=322 Identities=16% Similarity=0.155 Sum_probs=239.1
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHH
Q 003887 230 CGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRE 309 (789)
Q Consensus 230 ~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTre 309 (789)
+++++.+++.|... ...++|+|.++++.+++++++|++++||||||++|++|++.+++. .++++|||+|||+
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-------~~~~vLvl~Ptre 226 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-------RRLRTLILAPTRV 226 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------TTCCEEEEESSHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCeEEEEcChHH
Confidence 34555555545432 478899998899999999999999999999999999999998865 3578999999999
Q ss_pred HHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCC
Q 003887 310 LAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGF 389 (789)
Q Consensus 310 La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f 389 (789)
||.|+++.++. +.+. +.+.... .....+..|.++|.+.|...+... ..+.++++|||||||+| +.+|
T Consensus 227 La~Qi~~~l~~------~~v~-~~~~~l~----~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~ 293 (618)
T 2whx_A 227 VAAEMEEALRG------LPIR-YQTPAVK----SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCS 293 (618)
T ss_dssp HHHHHHHHTTT------SCEE-ECCTTSS----CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHH
T ss_pred HHHHHHHHhcC------Ccee-Eecccce----eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccH
Confidence 99999877762 2332 2221100 000123567788988887766544 45889999999999998 6677
Q ss_pred hHHHHHHHhhcC-CCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHHHHhcCCCC
Q 003887 390 EPQIRSIVGQIR-PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI 468 (789)
Q Consensus 390 ~~~i~~il~~~~-~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~ 468 (789)
...+..++..++ +++|+|+||||++..+..++. .++..+.+... ++. .++..++..|.+
T Consensus 294 ~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~-------------~~~--~~~~~ll~~l~~-- 353 (618)
T 2whx_A 294 VAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE-------------IPE--RSWNTGFDWITD-- 353 (618)
T ss_dssp HHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECC-------------CCS--SCCSSSCHHHHH--
T ss_pred HHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeeccc-------------CCH--HHHHHHHHHHHh--
Confidence 778888877775 789999999999876443222 13332222111 111 111111222221
Q ss_pred CCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEE------
Q 003887 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSV------ 542 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~V------ 542 (789)
..+++||||+++..++.+++.|...++.+..+||. +|.++++.|++|+.+|||||+++++||||+ +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~ 428 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRC 428 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEE
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcce
Confidence 25699999999999999999999999999999984 688899999999999999999999999997 8888
Q ss_pred --------------EEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEc---cccHHHHHHHHHHHHHcCCCc
Q 003887 543 --------------VNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVT---QKEARFAGELVNSLIAAGQNV 597 (789)
Q Consensus 543 --------------I~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~---~~d~~~~~~l~~~L~~~~~~v 597 (789)
|+|++|.+..+|+||+||+||.|.+.|.|++|++ +.+...+..+...+......+
T Consensus 429 ~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~ 500 (618)
T 2whx_A 429 LKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYT 500 (618)
T ss_dssp EEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCC
T ss_pred ecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhccccccC
Confidence 8889999999999999999999856899999998 777777777766664444444
No 42
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=4.5e-39 Score=371.44 Aligned_cols=311 Identities=17% Similarity=0.148 Sum_probs=234.4
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003887 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~ 325 (789)
..|+|+|.++++.++.++++|++++||+|||++|+++++..+.. .++++||||||++|+.||+++++++....
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-------~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~ 184 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-------YEGKILIIVPTTALTTQMADDFVDYRLFS 184 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH-------CSSEEEEEESSHHHHHHHHHHHHHTTSSC
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC-------CCCeEEEEECcHHHHHHHHHHHHHhhcCC
Confidence 47999999999999999999999999999999999988877642 23489999999999999999999986555
Q ss_pred CcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcCCCce
Q 003887 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405 (789)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q 405 (789)
++.+..++++.....+ +...++|+|+||+.|.. .....+.++++|||||||++.. ..+..++..+.+..+
T Consensus 185 ~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~ 254 (510)
T 2oca_A 185 HAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMF 254 (510)
T ss_dssp GGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCE
T ss_pred ccceEEEecCCccccc---cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcE
Confidence 6788888888776544 34569999999997654 2345678899999999999775 567788888888899
Q ss_pred EEEEeccCcHHHHHHHH-HHhCCCeEEeecccc------CccccceEEEEecC--------------------CCcchHH
Q 003887 406 TLLFSATMPRKVEKLAR-EILSDPVRVTVGEVG------MANEDITQVVHVIP--------------------SDAEKLP 458 (789)
Q Consensus 406 ~ll~SATl~~~v~~l~~-~~l~~p~~i~i~~~~------~~~~~i~q~~~~~~--------------------~~~~k~~ 458 (789)
+|+||||+++....+.. ..+..+..+.+.... .....+.......+ ....+..
T Consensus 255 ~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (510)
T 2oca_A 255 KFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNK 334 (510)
T ss_dssp EEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHH
T ss_pred EEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHH
Confidence 99999999776433221 112223222221110 00111111111111 0112223
Q ss_pred HHHHhcCCCC-CCC-cEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEee-hhhhccCC
Q 003887 459 WLLEKLPGMI-DDG-DVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT-DVAARGLD 535 (789)
Q Consensus 459 ~L~~~L~~~~-~~~-kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT-~v~~~GlD 535 (789)
.+.+.+.... ..+ ++||||+ ...++.|++.|...+..+..+||++++.+|..+++.|++|+.+||||| +++++|+|
T Consensus 335 ~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiD 413 (510)
T 2oca_A 335 WIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGIS 413 (510)
T ss_dssp HHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCC
T ss_pred HHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccc
Confidence 3444443322 223 5666666 889999999999988899999999999999999999999999999999 99999999
Q ss_pred CCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEE
Q 003887 536 IKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLV 575 (789)
Q Consensus 536 I~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~ 575 (789)
+|++++||++++|+++..|+||+||+||.|+ .+.+++++
T Consensus 414 ip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~-~~~~v~i~ 452 (510)
T 2oca_A 414 VKNLHHVVLAHGVKSKIIVLQTIGRVLRKHG-SKTIATVW 452 (510)
T ss_dssp CCSEEEEEESSCCCSCCHHHHHHHHHHTTTC-CCCCCEEE
T ss_pred cccCcEEEEeCCCCCHHHHHHHHhcccccCC-CCceEEEE
Confidence 9999999999999999999999999999994 34334343
No 43
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.9e-37 Score=396.58 Aligned_cols=338 Identities=19% Similarity=0.265 Sum_probs=259.2
Q ss_pred CCCCCcHHHHHHHHHHH-cCCCEEEEccCCChhhHHHHHHHHHHHhcCccc---ccCCCCEEEEEcCcHHHHHHHHHHHH
Q 003887 244 GYEKPTSIQCQALPIIL-SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPEL---QKEEGPIGVICAPTRELAHQIYLETK 319 (789)
Q Consensus 244 g~~~ptpiQ~~ai~~il-~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~---~~~~gp~vLIl~PTreLa~Qi~~~~~ 319 (789)
||.+|+++|.+++|.++ +++|+|++||||||||++|.++++..+...... ....+.++|||+|+++||.|+++.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 78999999999999987 578999999999999999999999999764321 22357789999999999999999999
Q ss_pred HHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhcc--ccccceeEEEEcccchhccCCChHHHHHHH
Q 003887 320 KFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKA--LTMSRVTYLVLDEADRMFDLGFEPQIRSIV 397 (789)
Q Consensus 320 k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~--~~l~~i~~lVlDEah~m~~~~f~~~i~~il 397 (789)
+.+...+++|..++|+...... ....++|+||||++|..++.+.. ..+..+++|||||+|.+.+ ..+..+..++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 9988889999999998765432 13459999999999866665432 2478899999999997765 5666655554
Q ss_pred h-------hcCCCceEEEEeccCcHHHHHHHHHHhCCCe-EEeeccccCccccceEEEEecCCCc--ch----HHHHHHh
Q 003887 398 G-------QIRPDRQTLLFSATMPRKVEKLAREILSDPV-RVTVGEVGMANEDITQVVHVIPSDA--EK----LPWLLEK 463 (789)
Q Consensus 398 ~-------~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~-~i~i~~~~~~~~~i~q~~~~~~~~~--~k----~~~L~~~ 463 (789)
. ..++..|+|++|||+|+ .++++.|+-.++. .+...........+.+.+..+.... .+ ...+.+.
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEK 310 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHH
Confidence 3 34678999999999985 5778877655431 1111111122223444443332211 11 1223445
Q ss_pred cCCCCCCCcEEEEecccccHHHHHHHHHHc-------------------------------------CCceeeccCCCCH
Q 003887 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQK-------------------------------------GFKAAALHGDKDQ 506 (789)
Q Consensus 464 L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~-------------------------------------g~~v~~lhg~~~~ 506 (789)
+.+....+++||||+++..|+.++..|.+. ...++.+||+|++
T Consensus 311 v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~ 390 (1724)
T 4f92_B 311 IMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTR 390 (1724)
T ss_dssp HTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCT
T ss_pred HHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCH
Confidence 555556779999999999999999888642 2347899999999
Q ss_pred HHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEE----EcC------CCCHHHHHHHHhhcCCCC-CCCeEEEEEE
Q 003887 507 ASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN----FDI------ARDMDMHVHRIGRTGRAG-DKDGTAYTLV 575 (789)
Q Consensus 507 ~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~----~d~------p~s~~~y~QriGR~gR~G-~~~G~~i~l~ 575 (789)
.+|..+.+.|++|.++|||||+++++|||+|.+++||. |++ |-++.+|+||+|||||.| ...|.++++.
T Consensus 391 ~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~ 470 (1724)
T 4f92_B 391 VDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILIT 470 (1724)
T ss_dssp HHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEE
T ss_pred HHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEe
Confidence 99999999999999999999999999999999999984 554 458999999999999998 4579999999
Q ss_pred ccccHHHHHHH
Q 003887 576 TQKEARFAGEL 586 (789)
Q Consensus 576 ~~~d~~~~~~l 586 (789)
.+.+...+..+
T Consensus 471 ~~~~~~~~~~l 481 (1724)
T 4f92_B 471 SHGELQYYLSL 481 (1724)
T ss_dssp ESTTCCHHHHH
T ss_pred cchhHHHHHHH
Confidence 88776555443
No 44
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.5e-38 Score=361.28 Aligned_cols=288 Identities=16% Similarity=0.177 Sum_probs=215.9
Q ss_pred CCCCCcHHHHHHHHHHHcCCCE-EEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHh
Q 003887 244 GYEKPTSIQCQALPIILSGRDI-IGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (789)
Q Consensus 244 g~~~ptpiQ~~ai~~il~grdv-l~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~ 322 (789)
|+.+|+|+|. +||.+++++++ |++++||||||++|++|++.++.. .++++|||+|||+||.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~--- 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-------RRLRTLILAPTRVVAAEMEEALR--- 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTT---
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-------cCCcEEEECCCHHHHHHHHHHhc---
Confidence 6788999985 79999999887 889999999999999999988754 35789999999999999988774
Q ss_pred hhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHh-hcC
Q 003887 323 KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVG-QIR 401 (789)
Q Consensus 323 ~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~-~~~ 401 (789)
++.+......... ....+..|.++|++.|...+... ..+.++++|||||||++ +..+...+..+.. ...
T Consensus 70 ---g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~ 139 (451)
T 2jlq_A 70 ---GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEM 139 (451)
T ss_dssp ---TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHT
T ss_pred ---Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcC
Confidence 3333322221111 11234679999999998877544 45889999999999986 3333333322222 235
Q ss_pred CCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHHHHhcCCCCCCCcEEEEecccc
Q 003887 402 PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKT 481 (789)
Q Consensus 402 ~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~ 481 (789)
+++|+++||||++..+.. .+..++..+.+... .... .......++.+ ..+++||||+++.
T Consensus 140 ~~~~~i~~SAT~~~~~~~---~~~~~~~~~~~~~~-~p~~----------~~~~~~~~l~~------~~~~~lVF~~s~~ 199 (451)
T 2jlq_A 140 GEAAAIFMTATPPGSTDP---FPQSNSPIEDIERE-IPER----------SWNTGFDWITD------YQGKTVWFVPSIK 199 (451)
T ss_dssp TSCEEEEECSSCTTCCCS---SCCCSSCEEEEECC-CCSS----------CCSSSCHHHHH------CCSCEEEECSSHH
T ss_pred CCceEEEEccCCCccchh---hhcCCCceEecCcc-CCch----------hhHHHHHHHHh------CCCCEEEEcCCHH
Confidence 689999999999875422 12233333332210 0000 00112223322 2569999999999
Q ss_pred cHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEc---------------
Q 003887 482 TVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFD--------------- 546 (789)
Q Consensus 482 ~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d--------------- 546 (789)
.++.++..|...++.+..+|+.+. ..+++.|++|+.+|||||+++++|||||+ ++||+||
T Consensus 200 ~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l 274 (451)
T 2jlq_A 200 AGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERV 274 (451)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEE
T ss_pred HHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccccccccee
Confidence 999999999999999999999764 57899999999999999999999999999 9999998
Q ss_pred -----CCCCHHHHHHHHhhcCCCCCCCeEEEEEEcc
Q 003887 547 -----IARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (789)
Q Consensus 547 -----~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~ 577 (789)
+|.+...|+||+||+||.|...|.|++|+..
T Consensus 275 ~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 275 ILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred eecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 9999999999999999999547889888644
No 45
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.4e-37 Score=355.37 Aligned_cols=295 Identities=20% Similarity=0.231 Sum_probs=223.1
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003887 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~ 325 (789)
..|+|+|.++++.++.++++|++++||+|||++|++++... +.++||||||++|+.||++++.+|
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-----------~~~~Lvl~P~~~L~~Q~~~~~~~~---- 156 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-----------CSCEEEEESSHHHHHHHHHHGGGG----
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEECCHHHHHHHHHHHHhC----
Confidence 47999999999999999999999999999999999887653 456999999999999999999884
Q ss_pred CcE-EEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcCCCc
Q 003887 326 GIR-VSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR 404 (789)
Q Consensus 326 ~i~-v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~ 404 (789)
++. +..++|+... ..+|+|+||+.|...+.. ...++++|||||||++.+..|.. ++..+ +..
T Consensus 157 ~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~ 219 (472)
T 2fwr_A 157 GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAP 219 (472)
T ss_dssp CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTSTTTHH----HHHTC-CCS
T ss_pred CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCChHHHH----HHHhc-CCC
Confidence 677 7777776643 478999999999876542 12468999999999999887753 34433 467
Q ss_pred eEEEEeccCcHH-------------------HHHHHHHHhCCCeEEee--ccccC------------------------c
Q 003887 405 QTLLFSATMPRK-------------------VEKLAREILSDPVRVTV--GEVGM------------------------A 439 (789)
Q Consensus 405 q~ll~SATl~~~-------------------v~~l~~~~l~~p~~i~i--~~~~~------------------------~ 439 (789)
++|++|||+.+. ...+...++..+..+.+ ..... .
T Consensus 220 ~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 299 (472)
T 2fwr_A 220 FRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRR 299 (472)
T ss_dssp EEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTC
T ss_pred eEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 899999998731 22222222222211111 00000 0
Q ss_pred cccceEEEE--------------------ecCCCcchHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceee
Q 003887 440 NEDITQVVH--------------------VIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAA 499 (789)
Q Consensus 440 ~~~i~q~~~--------------------~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~ 499 (789)
...+.+.+. .......|...|.+++.. ...+++||||+++..++.++..|. +..
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~k~lvF~~~~~~~~~l~~~l~-----~~~ 373 (472)
T 2fwr_A 300 AEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER-HRKDKIIIFTRHNELVYRISKVFL-----IPA 373 (472)
T ss_dssp CSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH-TSSSCBCCBCSCHHHHHHHHHHTT-----CCB
T ss_pred hhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHhC-----cce
Confidence 000000000 001123455666666655 356799999999999999999873 678
Q ss_pred ccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCC--CeEEEEEEcc
Q 003887 500 LHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDK--DGTAYTLVTQ 577 (789)
Q Consensus 500 lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~--~G~~i~l~~~ 577 (789)
+||+++..+|..+++.|++|.++|||||+++++|+|+|++++||+|++|+++..|+||+||+||.|+. ...+|.|++.
T Consensus 374 ~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~ 453 (472)
T 2fwr_A 374 ITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 453 (472)
T ss_dssp CCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred eeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999943 4566677775
Q ss_pred c
Q 003887 578 K 578 (789)
Q Consensus 578 ~ 578 (789)
.
T Consensus 454 ~ 454 (472)
T 2fwr_A 454 G 454 (472)
T ss_dssp S
T ss_pred C
Confidence 4
No 46
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=1.6e-38 Score=359.53 Aligned_cols=286 Identities=19% Similarity=0.245 Sum_probs=200.1
Q ss_pred HHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCC
Q 003887 258 IILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMS 337 (789)
Q Consensus 258 ~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~ 337 (789)
++++++++|++++||||||++|++|++..+.. .++++|||+||++||.|+++.++.+ + +.+..+..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-------~~~~~lil~Ptr~La~Q~~~~l~~~----~--v~~~~~~~- 69 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR-------RRLRTLVLAPTRVVLSEMKEAFHGL----D--VKFHTQAF- 69 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTTTS----C--EEEESSCC-
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh-------cCCeEEEEcchHHHHHHHHHHHhcC----C--eEEecccc-
Confidence 45789999999999999999999999998754 3578999999999999999887743 2 22211110
Q ss_pred hHHHHHHHhcCCcEEEeCHHHHHHHHhhc--------cccccceeEEEEcccchhccCCChHHHHHHHhhc-CCCceEEE
Q 003887 338 KLDQFKELKAGCEIVIATPGRLIDMLKMK--------ALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPDRQTLL 408 (789)
Q Consensus 338 ~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~--------~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~-~~~~q~ll 408 (789)
-+|+||+++++++... ...+.++++|||||||++ +.++...+..+...+ +..+|+++
T Consensus 70 -------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~ 135 (440)
T 1yks_A 70 -------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATIL 135 (440)
T ss_dssp -------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEE
T ss_pred -------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEE
Confidence 0366665554333222 234789999999999998 333332222222222 36799999
Q ss_pred EeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCC--CcchHHHHHHhcCCCCCCCcEEEEecccccHHHH
Q 003887 409 FSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPS--DAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEI 486 (789)
Q Consensus 409 ~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~--~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l 486 (789)
||||+++.+..++.. ..+ +......++. ....+..+.+ ..+++||||+++..++.+
T Consensus 136 ~SAT~~~~~~~~~~~--~~~--------------~~~~~~~~~~~~~~~~~~~l~~------~~~~~lVF~~s~~~a~~l 193 (440)
T 1yks_A 136 MTATPPGTSDEFPHS--NGE--------------IEDVQTDIPSEPWNTGHDWILA------DKRPTAWFLPSIRAANVM 193 (440)
T ss_dssp ECSSCTTCCCSSCCC--SSC--------------EEEEECCCCSSCCSSSCHHHHH------CCSCEEEECSCHHHHHHH
T ss_pred EeCCCCchhhhhhhc--CCC--------------eeEeeeccChHHHHHHHHHHHh------cCCCEEEEeCCHHHHHHH
Confidence 999998764322211 011 1111111111 1112233322 257999999999999999
Q ss_pred HHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEE-------------------EcC
Q 003887 487 ESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN-------------------FDI 547 (789)
Q Consensus 487 ~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~-------------------~d~ 547 (789)
++.|...++.+..+|| .+|..+++.|++|+++|||||+++++||||| +++||+ |+.
T Consensus 194 ~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~ 268 (440)
T 1yks_A 194 AASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPL 268 (440)
T ss_dssp HHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEE
T ss_pred HHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeecccc
Confidence 9999999999999999 4688999999999999999999999999999 999986 999
Q ss_pred CCCHHHHHHHHhhcCCCCCCCeEEEEEE---ccccHHHHHHHHHHHHHcCCCcc
Q 003887 548 ARDMDMHVHRIGRTGRAGDKDGTAYTLV---TQKEARFAGELVNSLIAAGQNVS 598 (789)
Q Consensus 548 p~s~~~y~QriGR~gR~G~~~G~~i~l~---~~~d~~~~~~l~~~L~~~~~~vp 598 (789)
|.+...|+||+||+||.|.+.|.|++|+ ++.+...+..+...+..+...++
T Consensus 269 p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~ 322 (440)
T 1yks_A 269 RISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVR 322 (440)
T ss_dssp ECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCG
T ss_pred ccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhcccccccc
Confidence 9999999999999999854789999996 67777777776666555555443
No 47
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=4.8e-37 Score=368.52 Aligned_cols=339 Identities=19% Similarity=0.251 Sum_probs=247.5
Q ss_pred CCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHc-CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCC
Q 003887 221 PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILS-GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGP 299 (789)
Q Consensus 221 P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~-grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp 299 (789)
+.++.+|.++++++.+.+.+...+ ..|+++|+++|+.++. +++++++++||+|||+ ++|++...... ....++
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~---~~~~g~ 141 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEM---PHLENT 141 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHC---GGGGTC
T ss_pred cCCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhcc---ccCCCc
Confidence 456788999999999999999887 7899999999988775 4679999999999998 46665322111 112367
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEc
Q 003887 300 IGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLD 379 (789)
Q Consensus 300 ~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlD 379 (789)
+++|++|+++||.|+++.+.... ++.+...+|+...... ......+|+|+||++|.+.+... ..+.++++||||
T Consensus 142 ~ilvl~P~r~La~q~~~~l~~~~---~~~v~~~vG~~i~~~~--~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlD 215 (773)
T 2xau_A 142 QVACTQPRRVAAMSVAQRVAEEM---DVKLGEEVGYSIRFEN--KTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILD 215 (773)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHT---TCCBTTTEEEEETTEE--ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEEC
T ss_pred eEEecCchHHHHHHHHHHHHHHh---CCchhheecceecccc--ccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEec
Confidence 79999999999999987665543 3332222221100000 01135899999999999887654 458899999999
Q ss_pred ccch-hccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHH
Q 003887 380 EADR-MFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLP 458 (789)
Q Consensus 380 Eah~-m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~ 458 (789)
|+|. +++..+...+...+....++.|+|+||||++. ..+. .++.++..+.+... ...+.+.+.... ...+..
T Consensus 216 Eah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~--~~l~-~~~~~~~vi~v~gr---~~pv~~~~~~~~-~~~~~~ 288 (773)
T 2xau_A 216 EAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA--EKFQ-RYFNDAPLLAVPGR---TYPVELYYTPEF-QRDYLD 288 (773)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC--HHHH-HHTTSCCEEECCCC---CCCEEEECCSSC-CSCHHH
T ss_pred CccccccchHHHHHHHHHHHHhCCCceEEEEeccccH--HHHH-HHhcCCCcccccCc---ccceEEEEecCC-chhHHH
Confidence 9995 66644332333333344578999999999964 3444 45554433443222 223444333222 222332
Q ss_pred HHHHhcCC---CCCCCcEEEEecccccHHHHHHHHHH-----------cCCceeeccCCCCHHHHHHHHHHhh-----cC
Q 003887 459 WLLEKLPG---MIDDGDVLVFASKKTTVDEIESQLAQ-----------KGFKAAALHGDKDQASRMEILQKFK-----SG 519 (789)
Q Consensus 459 ~L~~~L~~---~~~~~kvLVF~~s~~~a~~l~~~L~~-----------~g~~v~~lhg~~~~~eR~~~l~~F~-----~G 519 (789)
.++..+.. ....+++||||+++..++.++..|.+ .++.+..+||+|++.+|..+++.|+ +|
T Consensus 289 ~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g 368 (773)
T 2xau_A 289 SAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRP 368 (773)
T ss_dssp HHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSC
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCC
Confidence 22222211 12467999999999999999999985 5788999999999999999999999 99
Q ss_pred CccEEEeehhhhccCCCCCccEEEEEcC------------------CCCHHHHHHHHhhcCCCCCCCeEEEEEEccccH
Q 003887 520 VYHVLIATDVAARGLDIKSIKSVVNFDI------------------ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (789)
Q Consensus 520 ~~~VLVaT~v~~~GlDI~~v~~VI~~d~------------------p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~ 580 (789)
..+|||||+++++|||||+|++||++++ |.+...|+||+||+||. +.|.||+|+++.+.
T Consensus 369 ~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~--~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 369 GRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT--RPGKCFRLYTEEAF 445 (773)
T ss_dssp CEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS--SSEEEEESSCHHHH
T ss_pred ceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC--CCCEEEEEecHHHh
Confidence 9999999999999999999999999777 88999999999999998 47999999987655
No 48
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=7.1e-36 Score=312.95 Aligned_cols=236 Identities=42% Similarity=0.721 Sum_probs=202.7
Q ss_pred cCcccccCCCCC--CCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHh
Q 003887 211 LAIRVSGFDVPR--PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (789)
Q Consensus 211 ~~i~v~~~~~P~--pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~ 288 (789)
+.+.+.+...|. ++.+|++++|++.+++.|...||..|+|+|.++++.++.+++++++++||+|||++|++|++.++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~ 86 (253)
T 1wrb_A 7 IPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLV 86 (253)
T ss_dssp CCCCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CceeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHH
Confidence 456677888887 899999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCccc----ccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHh
Q 003887 289 DQPEL----QKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLK 364 (789)
Q Consensus 289 ~~~~~----~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~ 364 (789)
..... ....++++|||+||++|+.||++.++++....++++..++|+.....+...+..+++|+|+||++|.+++.
T Consensus 87 ~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~ 166 (253)
T 1wrb_A 87 CQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIE 166 (253)
T ss_dssp TTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHH
T ss_pred hhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHH
Confidence 54311 12345789999999999999999999998888899999999999888888888899999999999999998
Q ss_pred hccccccceeEEEEcccchhccCCChHHHHHHHhhc--CC--CceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCcc
Q 003887 365 MKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI--RP--DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMAN 440 (789)
Q Consensus 365 ~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~--~~--~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~ 440 (789)
.....+.++++|||||||+|++++|...+..++..+ +. .+|+++||||+++.+..+++.++.+|..+.++......
T Consensus 167 ~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~ 246 (253)
T 1wrb_A 167 KNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTS 246 (253)
T ss_dssp TTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC------
T ss_pred cCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCc
Confidence 888889999999999999999999999999999854 33 68999999999999999999999999999988776666
Q ss_pred ccceEE
Q 003887 441 EDITQV 446 (789)
Q Consensus 441 ~~i~q~ 446 (789)
..|.|.
T Consensus 247 ~~i~q~ 252 (253)
T 1wrb_A 247 DSIKQE 252 (253)
T ss_dssp ------
T ss_pred CCceec
Confidence 666664
No 49
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=1.9e-37 Score=360.75 Aligned_cols=279 Identities=23% Similarity=0.260 Sum_probs=213.5
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003887 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (789)
Q Consensus 247 ~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~ 326 (789)
.+.++|.++++.+..++++|++|+||||||++|++|++.. +.++||++|||+||.|+++.+.+.. +
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~-----------g~~vLVl~PTReLA~Qia~~l~~~~---g 282 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ-----------GYKVLVLNPSVAATLGFGAYMSKAH---G 282 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT-----------TCCEEEEESCHHHHHHHHHHHHHHH---S
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC-----------CCeEEEEcchHHHHHHHHHHHHHHh---C
Confidence 4455666666777788999999999999999999887752 4579999999999999988766554 5
Q ss_pred cEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcCCCce-
Q 003887 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ- 405 (789)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q- 405 (789)
..+...+|+.. +..+++|+|+||++| +....+.+.++++||||||| +++.+|...+..++..++..+|
T Consensus 283 ~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~~~~ 351 (666)
T 3o8b_A 283 IDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETAGAR 351 (666)
T ss_dssp CCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTTTCS
T ss_pred CCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhcCCc
Confidence 66777777754 245699999999998 45566778899999999996 5677788888889988887777
Q ss_pred -EEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHHHHhcCCCCCCCcEEEEecccccHH
Q 003887 406 -TLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVD 484 (789)
Q Consensus 406 -~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~ 484 (789)
+++||||+++.+. ...+....+.. ..... +.... .+.. + .....+++||||++++.++
T Consensus 352 llil~SAT~~~~i~------~~~p~i~~v~~---~~~~~---i~~~~---~~~~-----l-~~~~~~~vLVFv~Tr~~ae 410 (666)
T 3o8b_A 352 LVVLATATPPGSVT------VPHPNIEEVAL---SNTGE---IPFYG---KAIP-----I-EAIRGGRHLIFCHSKKKCD 410 (666)
T ss_dssp EEEEEESSCTTCCC------CCCTTEEEEEC---BSCSS---EEETT---EEEC-----G-GGSSSSEEEEECSCHHHHH
T ss_pred eEEEECCCCCcccc------cCCcceEEEee---cccch---hHHHH---hhhh-----h-hhccCCcEEEEeCCHHHHH
Confidence 6778999987321 11111111100 00000 01110 0000 1 1225679999999999999
Q ss_pred HHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEE----------EEc--------
Q 003887 485 EIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVV----------NFD-------- 546 (789)
Q Consensus 485 ~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI----------~~d-------- 546 (789)
.+++.|.+.++.+..+||+|++.+ |.++..+|||||+++++||||+ +++|| |||
T Consensus 411 ~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~ 482 (666)
T 3o8b_A 411 ELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIE 482 (666)
T ss_dssp HHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEE
T ss_pred HHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccc
Confidence 999999999999999999999865 5566679999999999999997 99988 777
Q ss_pred ---CCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHH
Q 003887 547 ---IARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARF 582 (789)
Q Consensus 547 ---~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~ 582 (789)
.|.+...|+||+||+|| | +.|. |+|+++.+...
T Consensus 483 ~~~~P~s~~syiQRiGRtGR-g-~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 483 TTTVPQDAVSRSQRRGRTGR-G-RRGI-YRFVTPGERPS 518 (666)
T ss_dssp EEEEECBHHHHHHHHTTBCS-S-SCEE-EEESCCCCBCS
T ss_pred cccCcCCHHHHHHHhccCCC-C-CCCE-EEEEecchhhc
Confidence 89999999999999999 7 6799 99998876544
No 50
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=3.2e-37 Score=363.79 Aligned_cols=306 Identities=19% Similarity=0.232 Sum_probs=215.1
Q ss_pred HHHcCCC-----CCcHHHH-----HHHHHHH------cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEE
Q 003887 240 ISKQGYE-----KPTSIQC-----QALPIIL------SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (789)
Q Consensus 240 l~~~g~~-----~ptpiQ~-----~ai~~il------~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLI 303 (789)
|...||. .|||+|. ++||.++ .++++|++++||||||++|++|++..+.. .++++||
T Consensus 203 l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-------~~~~~li 275 (673)
T 2wv9_A 203 LYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-------KRLRTAV 275 (673)
T ss_dssp EEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-------TTCCEEE
T ss_pred eeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCcEEE
Confidence 3345666 8999999 9999988 89999999999999999999999988754 3578999
Q ss_pred EcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccch
Q 003887 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (789)
Q Consensus 304 l~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~ 383 (789)
|+||++||.|+++.++.+ ++. ...+.... ....+.-+-+.+.+.+...+... ..+.++++|||||||+
T Consensus 276 laPTr~La~Q~~~~l~~~----~i~--~~~~~l~~-----v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~ 343 (673)
T 2wv9_A 276 LAPTRVVAAEMAEALRGL----PVR--YLTPAVQR-----EHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHF 343 (673)
T ss_dssp EESSHHHHHHHHHHTTTS----CCE--ECCC---C-----CCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTC
T ss_pred EccHHHHHHHHHHHHhcC----Cee--eecccccc-----cCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCcc
Confidence 999999999999887754 332 11110000 00011234445555554444332 4688999999999999
Q ss_pred hccCCChHHHHHHHhhc-CCCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHHHH
Q 003887 384 MFDLGFEPQIRSIVGQI-RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462 (789)
Q Consensus 384 m~~~~f~~~i~~il~~~-~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~ 462 (789)
+ +..+...+..+...+ +..+|+|+||||+++.+..+.. . ...+......++. .+...++.
T Consensus 344 ~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~----~------------~~~i~~v~~~~~~--~~~~~~l~ 404 (673)
T 2wv9_A 344 T-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPD----T------------NSPVHDVSSEIPD--RAWSSGFE 404 (673)
T ss_dssp C-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCC----C------------SSCEEEEECCCCS--SCCSSCCH
T ss_pred c-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhcc----c------------CCceEEEeeecCH--HHHHHHHH
Confidence 7 221222333333333 3679999999999866332111 0 1111111111111 11111122
Q ss_pred hcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEE
Q 003887 463 KLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSV 542 (789)
Q Consensus 463 ~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~V 542 (789)
.+.+ ..+++||||+++..++.++..|...++.+..+||. +|..+++.|++|+++|||||+++++||||| +++|
T Consensus 405 ~l~~--~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~V 477 (673)
T 2wv9_A 405 WITD--YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRV 477 (673)
T ss_dssp HHHS--CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEE
T ss_pred HHHh--CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEE
Confidence 2222 36799999999999999999999999999999993 789999999999999999999999999999 9999
Q ss_pred EE--------------------EcCCCCHHHHHHHHhhcCCCCCCCeEEEEEE---ccccHHHHHHHHHHH
Q 003887 543 VN--------------------FDIARDMDMHVHRIGRTGRAGDKDGTAYTLV---TQKEARFAGELVNSL 590 (789)
Q Consensus 543 I~--------------------~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~---~~~d~~~~~~l~~~L 590 (789)
|+ |++|.++..|+||+||+||.+.+.|.||+|+ ++.+..++..+...+
T Consensus 478 I~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 478 IDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp EECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred EECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 98 6799999999999999999944789999996 566766555554433
No 51
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=4.3e-35 Score=301.98 Aligned_cols=217 Identities=42% Similarity=0.703 Sum_probs=190.3
Q ss_pred ccCCCCCCCCCccc-CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccc-
Q 003887 216 SGFDVPRPVKTFED-CGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPEL- 293 (789)
Q Consensus 216 ~~~~~P~pi~sf~~-~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~- 293 (789)
....+|+|+.+|.+ +++++.+++.|.+.||.+|+|+|.++++.+++++|++++++||+|||++|++|++.++......
T Consensus 10 ~~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~ 89 (228)
T 3iuy_A 10 EKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR 89 (228)
T ss_dssp SCCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC------
T ss_pred ccCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchh
Confidence 34568999999999 7999999999999999999999999999999999999999999999999999999988653211
Q ss_pred ccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccce
Q 003887 294 QKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRV 373 (789)
Q Consensus 294 ~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i 373 (789)
....++++|||+||++||.|+++.++++. ..++++.+++|+.....+...+..+++|+|+||++|.+++......+.++
T Consensus 90 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 90 EQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp ---CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred hccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 12357889999999999999999999986 34789999999998888888888899999999999999998888889999
Q ss_pred eEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEee
Q 003887 374 TYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTV 433 (789)
Q Consensus 374 ~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i 433 (789)
++|||||||+|.+++|...+..++..+++++|+++||||+|+.+..++..++.+|+.+.+
T Consensus 169 ~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 169 TYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp CEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEC
T ss_pred eEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 999999999999999999999999999999999999999999999999999999987753
No 52
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=3.3e-36 Score=342.60 Aligned_cols=272 Identities=19% Similarity=0.256 Sum_probs=199.0
Q ss_pred HHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcC
Q 003887 256 LPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGG 335 (789)
Q Consensus 256 i~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg 335 (789)
..++..++++|++++||||||++|++|++.+++. .++++|||+|||+||.|+++.+. ++.+....+.
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~ 81 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-------QRLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSA 81 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEECSHHHHHHHHHHTT------TSCEEECC--
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-------CCCcEEEECchHHHHHHHHHHhc------CceEeEEecc
Confidence 4456678999999999999999999999998754 35789999999999999988876 3333222211
Q ss_pred CChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccch-----hccCCChHHHHHHHhhcCCCceEEEEe
Q 003887 336 MSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR-----MFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 336 ~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~-----m~~~~f~~~i~~il~~~~~~~q~ll~S 410 (789)
... .-..+.-|.++|.+.|...+... ..+.++++|||||||+ ++.++|...+. ..+.+|+|+||
T Consensus 82 ~~~-----~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~-----~~~~~~~il~S 150 (459)
T 2z83_A 82 VQR-----EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATKV-----ELGEAAAIFMT 150 (459)
T ss_dssp -----------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-----HTTSCEEEEEC
T ss_pred ccc-----CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHHh-----ccCCccEEEEE
Confidence 111 01234567888998887766543 4588999999999998 44444332221 23689999999
Q ss_pred ccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCC--CcchHHHHHHhcCCCCCCCcEEEEecccccHHHHHH
Q 003887 411 ATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPS--DAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIES 488 (789)
Q Consensus 411 ATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~--~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~ 488 (789)
||++..+..+... ..|+.... ..++. .......+.+ ..+++||||+++..++.++.
T Consensus 151 AT~~~~~~~~~~~--~~pi~~~~--------------~~~~~~~~~~~~~~l~~------~~~~~LVF~~s~~~~~~l~~ 208 (459)
T 2z83_A 151 ATPPGTTDPFPDS--NAPIHDLQ--------------DEIPDRAWSSGYEWITE------YAGKTVWFVASVKMGNEIAM 208 (459)
T ss_dssp SSCTTCCCSSCCC--SSCEEEEE--------------CCCCSSCCSSCCHHHHH------CCSCEEEECSCHHHHHHHHH
T ss_pred cCCCcchhhhccC--CCCeEEec--------------ccCCcchhHHHHHHHHh------cCCCEEEEeCChHHHHHHHH
Confidence 9998654222111 12222111 01111 1112222222 25799999999999999999
Q ss_pred HHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEE--------------------EcCC
Q 003887 489 QLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN--------------------FDIA 548 (789)
Q Consensus 489 ~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~--------------------~d~p 548 (789)
.|...++.+..+|+. +|..+++.|++|+.+|||||+++++|||||+ ++||+ |++|
T Consensus 209 ~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p 283 (459)
T 2z83_A 209 CLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSP 283 (459)
T ss_dssp HHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEE
T ss_pred HHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCC
Confidence 999999999999995 6788999999999999999999999999999 99999 7799
Q ss_pred CCHHHHHHHHhhcCCCCCCCeEEEEEEccc
Q 003887 549 RDMDMHVHRIGRTGRAGDKDGTAYTLVTQK 578 (789)
Q Consensus 549 ~s~~~y~QriGR~gR~G~~~G~~i~l~~~~ 578 (789)
.+...|+||+||+||.|.+.|.|++|++..
T Consensus 284 ~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 284 ITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 999999999999999995489999999885
No 53
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=4.4e-34 Score=298.93 Aligned_cols=209 Identities=43% Similarity=0.713 Sum_probs=193.5
Q ss_pred CCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCE
Q 003887 221 PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPI 300 (789)
Q Consensus 221 P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~ 300 (789)
+.++.+|+++++++.+++.|.+.||..|+++|.++++.++++++++++++||+|||++|++|++.++... ..+++
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~-----~~~~~ 113 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET-----PQRLF 113 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-----CCSSC
T ss_pred ccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC-----CCCce
Confidence 3457889999999999999999999999999999999999999999999999999999999999988654 24678
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhh-ccccccceeEEEEc
Q 003887 301 GVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM-KALTMSRVTYLVLD 379 (789)
Q Consensus 301 vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~-~~~~l~~i~~lVlD 379 (789)
+|||+||++|+.|+++.+++++...++++.+++|+.....+...+..+++|+|+||++|.+++.. ..+.+..+++||||
T Consensus 114 ~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViD 193 (249)
T 3ber_A 114 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMD 193 (249)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEEC
T ss_pred EEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEc
Confidence 99999999999999999999998889999999999998888888888999999999999999876 45678899999999
Q ss_pred ccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeec
Q 003887 380 EADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVG 434 (789)
Q Consensus 380 Eah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~ 434 (789)
|||+|.+++|...+..++..+++.+|+++||||+++.+.++++.++.+|..+.++
T Consensus 194 Eah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 194 EADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp SHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred ChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999999999999999999999999999999999888653
No 54
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1e-34 Score=327.80 Aligned_cols=270 Identities=21% Similarity=0.224 Sum_probs=195.0
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHH
Q 003887 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~ 340 (789)
.++++|++++||||||++|++|++.++.. .++++|||+||++||.|+++.+. ++.+.+..++...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~-------~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK-------KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS-- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC--------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc--
Confidence 36899999999999999999999977653 35789999999999999987665 4455544443221
Q ss_pred HHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhc-CCCceEEEEeccCcHHHHH
Q 003887 341 QFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPDRQTLLFSATMPRKVEK 419 (789)
Q Consensus 341 ~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~-~~~~q~ll~SATl~~~v~~ 419 (789)
.-..+.-+.++|.+.+...+.. ...+.++++|||||||++ ...+..+...+.... ++.+|+|+||||+++.+..
T Consensus 66 ---~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~ 140 (431)
T 2v6i_A 66 ---ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEA 140 (431)
T ss_dssp ------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCS
T ss_pred ---cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhh
Confidence 1112456778899988776655 456889999999999996 333333333333332 5689999999999864321
Q ss_pred HHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceee
Q 003887 420 LAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAA 499 (789)
Q Consensus 420 l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~ 499 (789)
+.. ....+......++ ..+...++..+.+ ..+++||||+++..++.+++.|...++.+..
T Consensus 141 ~~~----------------~~~~i~~~~~~~~--~~~~~~~~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~ 200 (431)
T 2v6i_A 141 FPP----------------SNSPIIDEETRIP--DKAWNSGYEWITE--FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLY 200 (431)
T ss_dssp SCC----------------CSSCCEEEECCCC--SSCCSSCCHHHHS--CSSCEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred hcC----------------CCCceeeccccCC--HHHHHHHHHHHHc--CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEE
Confidence 110 0111111111111 1111222233333 2568999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccE-----------------EEEEcCCCCHHHHHHHHhhcC
Q 003887 500 LHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKS-----------------VVNFDIARDMDMHVHRIGRTG 562 (789)
Q Consensus 500 lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~-----------------VI~~d~p~s~~~y~QriGR~g 562 (789)
+||. +|..+++.|++|+++|||||+++++|||+| +.+ ||+++.|.+...|+||+||+|
T Consensus 201 lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~G 275 (431)
T 2v6i_A 201 LNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIG 275 (431)
T ss_dssp ESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSS
T ss_pred eCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccC
Confidence 9997 578899999999999999999999999999 544 678999999999999999999
Q ss_pred CCCCCCeEEEEEE
Q 003887 563 RAGDKDGTAYTLV 575 (789)
Q Consensus 563 R~G~~~G~~i~l~ 575 (789)
|.|...+.++++.
T Consensus 276 R~g~~~~~~~~~~ 288 (431)
T 2v6i_A 276 RNPEKLGDIYAYS 288 (431)
T ss_dssp CCTTCCCCEEEEC
T ss_pred CCCCCCCeEEEEc
Confidence 9985556666665
No 55
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=2.6e-34 Score=298.25 Aligned_cols=214 Identities=33% Similarity=0.532 Sum_probs=181.4
Q ss_pred ccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccc
Q 003887 216 SGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQK 295 (789)
Q Consensus 216 ~~~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~ 295 (789)
.....|.++.+|++++|++.+++.|.+.||..|+|+|.++++.+++++++|++++||+|||++|++|++..+...
T Consensus 21 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~----- 95 (237)
T 3bor_A 21 IESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE----- 95 (237)
T ss_dssp ------CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----
T ss_pred ccCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----
Confidence 344567889999999999999999999999999999999999999999999999999999999999999886432
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcC-CcEEEeCHHHHHHHHhhcccccccee
Q 003887 296 EEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAG-CEIVIATPGRLIDMLKMKALTMSRVT 374 (789)
Q Consensus 296 ~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~-~dIiV~Tp~~L~~~l~~~~~~l~~i~ 374 (789)
..++++|||+||++|+.|+++.+++++...++.+..++|+.....+...+..+ ++|+|+||++|.+++......+..++
T Consensus 96 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~ 175 (237)
T 3bor_A 96 FKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIK 175 (237)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCC
T ss_pred CCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCc
Confidence 24678999999999999999999999887789999999998877777777666 89999999999999988878889999
Q ss_pred EEEEcccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeec
Q 003887 375 YLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVG 434 (789)
Q Consensus 375 ~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~ 434 (789)
+|||||||+|.+++|...+..++..+++.+|+++||||+++.+..+++.++.+|..+.+.
T Consensus 176 ~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 176 MFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp EEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred EEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 999999999999999999999999999999999999999999999999999999887653
No 56
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.4e-33 Score=292.20 Aligned_cols=227 Identities=31% Similarity=0.504 Sum_probs=196.9
Q ss_pred HHHHHHHHHHcCcccccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHH
Q 003887 201 EQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFV 280 (789)
Q Consensus 201 ~~~~~~~r~~~~i~v~~~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~l 280 (789)
.+++..+++.+.. ..++++.+|+++++++.+++.|.+.||..|+|+|.++++.++++++++++++||+|||++|+
T Consensus 6 ~~~~~~~~~~~~~-----~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 6 RESISRLMQNYEK-----INVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp HHHHHHHHHTTTT-----CCGGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred HhHHHHHHhcccc-----CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 3455556655432 22567889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHH
Q 003887 281 LPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLI 360 (789)
Q Consensus 281 lp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~ 360 (789)
+|++.+++.... ....++++|||+||++|+.||++.++++....++++.+++|+.....+...+ .+++|+|+||++|.
T Consensus 81 ~~~l~~l~~~~~-~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~ 158 (236)
T 2pl3_A 81 VPVLEALYRLQW-TSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLL 158 (236)
T ss_dssp HHHHHHHHHTTC-CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHH
T ss_pred HHHHHHHHhhcc-cccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHH
Confidence 999998875422 1234788999999999999999999999887789999999998877665555 57999999999999
Q ss_pred HHHhhc-cccccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeec
Q 003887 361 DMLKMK-ALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVG 434 (789)
Q Consensus 361 ~~l~~~-~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~ 434 (789)
+.+... .+.+.++++|||||||+|.+++|...+..++..+++.+|+++||||+++.+..+++.++.+|..+.+.
T Consensus 159 ~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 159 QHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp HHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred HHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 988764 46688999999999999999999999999999999999999999999999999999999999888764
No 57
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.5e-34 Score=299.65 Aligned_cols=230 Identities=33% Similarity=0.575 Sum_probs=198.9
Q ss_pred HHHHHHHHcCcccccCCCCCCCCCcccC----CCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHH
Q 003887 203 DVMEYKKSLAIRVSGFDVPRPVKTFEDC----GFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 203 ~~~~~r~~~~i~v~~~~~P~pi~sf~~~----~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla 278 (789)
++..++++..+.+.+..+|.|+.+|+++ ++++.+++.|.+.||..|+|+|.++++.++++++++++++||+|||++
T Consensus 3 ~~~~~~~~~~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 3 KINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHHHTTEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred hHHHHHHhCceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHH
Confidence 4677889999999999999999999987 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHH-HHHhcCCcEEEeCHH
Q 003887 279 FVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF-KELKAGCEIVIATPG 357 (789)
Q Consensus 279 ~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~-~~l~~~~dIiV~Tp~ 357 (789)
|++|++.++... ...++++|||+||++|+.|+++.+++++...++++..++|+....... .....+++|+|+||+
T Consensus 83 ~~l~~l~~l~~~----~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~ 158 (245)
T 3dkp_A 83 FSIPILMQLKQP----ANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPN 158 (245)
T ss_dssp HHHHHHHHHCSC----CSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHH
T ss_pred HHHHHHHHHhhc----ccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHH
Confidence 999999988542 134678999999999999999999999988888888877654322211 112346899999999
Q ss_pred HHHHHHhhc--cccccceeEEEEcccchhcc---CCChHHHHHHHhhc-CCCceEEEEeccCcHHHHHHHHHHhCCCeEE
Q 003887 358 RLIDMLKMK--ALTMSRVTYLVLDEADRMFD---LGFEPQIRSIVGQI-RPDRQTLLFSATMPRKVEKLAREILSDPVRV 431 (789)
Q Consensus 358 ~L~~~l~~~--~~~l~~i~~lVlDEah~m~~---~~f~~~i~~il~~~-~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i 431 (789)
+|.+++... ...+.++++|||||||+|.+ .+|...+..++..+ ++..|+++||||+|+.+..+++.++.+|+.+
T Consensus 159 ~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i 238 (245)
T 3dkp_A 159 RLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISV 238 (245)
T ss_dssp HHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEE
T ss_pred HHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEE
Confidence 999999776 46788999999999999998 56888888887766 4578999999999999999999999999999
Q ss_pred eeccc
Q 003887 432 TVGEV 436 (789)
Q Consensus 432 ~i~~~ 436 (789)
.++..
T Consensus 239 ~~~~~ 243 (245)
T 3dkp_A 239 SIGAR 243 (245)
T ss_dssp EECC-
T ss_pred EeCCC
Confidence 88653
No 58
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=8.7e-34 Score=292.91 Aligned_cols=212 Identities=27% Similarity=0.446 Sum_probs=185.4
Q ss_pred ccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCccccc
Q 003887 216 SGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQK 295 (789)
Q Consensus 216 ~~~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~ 295 (789)
.+...|.+..+|+++++++.+.+.|.+.||..|+|+|.++++.++++++++++++||+|||++|++|++.++...
T Consensus 15 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~----- 89 (230)
T 2oxc_A 15 TGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE----- 89 (230)
T ss_dssp ---------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----
T ss_pred cCCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----
Confidence 345667888999999999999999999999999999999999999999999999999999999999999887543
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHHHhhhc-CcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhcccccccee
Q 003887 296 EEGPIGVICAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVT 374 (789)
Q Consensus 296 ~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~-~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~ 374 (789)
..++++|||+||++|+.|+++.++++.... ++++.+++|+.....+...+ .+++|+|+||++|.+++....+.+.+++
T Consensus 90 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~ 168 (230)
T 2oxc_A 90 NLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIR 168 (230)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCC
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCC
Confidence 346789999999999999999999997654 78999999998876665544 4799999999999999988888889999
Q ss_pred EEEEcccchhccCC-ChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEee
Q 003887 375 YLVLDEADRMFDLG-FEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTV 433 (789)
Q Consensus 375 ~lVlDEah~m~~~~-f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i 433 (789)
+|||||||++++++ |...+..++..++..+|+++||||+++.+..++..++.+|..+.+
T Consensus 169 ~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 169 LFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp EEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred EEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 99999999999997 999999999999989999999999999999999999999987754
No 59
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=6.8e-35 Score=342.57 Aligned_cols=305 Identities=16% Similarity=0.149 Sum_probs=191.6
Q ss_pred CCCcHHHHHHHHHHHc----C-CCEEEEccCCChhhHHHHHHHHHHHhcCc--ccccCCCCEEEEEcCcHHHHHHHH-HH
Q 003887 246 EKPTSIQCQALPIILS----G-RDIIGIAKTGSGKTAAFVLPMIVHIMDQP--ELQKEEGPIGVICAPTRELAHQIY-LE 317 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~----g-rdvl~~a~TGsGKTla~llp~l~~l~~~~--~~~~~~gp~vLIl~PTreLa~Qi~-~~ 317 (789)
..|+|+|.++++.++. + +++|++++||+|||++++. ++..++... ......++++||||||++|+.||. +.
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~-~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQ-ISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHH-HHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 3699999999999886 4 6689999999999999554 445554321 001124678999999999999998 77
Q ss_pred HHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHh----hccccccceeEEEEcccchhccCCChHHH
Q 003887 318 TKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLK----MKALTMSRVTYLVLDEADRMFDLGFEPQI 393 (789)
Q Consensus 318 ~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~----~~~~~l~~i~~lVlDEah~m~~~~f~~~i 393 (789)
++.+. ..+..+.++. +..+.+|+|+||++|...+. ...+....+++|||||||++.... ...+
T Consensus 256 ~~~~~----~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~ 322 (590)
T 3h1t_A 256 FTPFG----DARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNW 322 (590)
T ss_dssp CTTTC----SSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------C
T ss_pred HHhcc----hhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHH
Confidence 77663 3344443322 23468999999999988764 233456779999999999987643 2455
Q ss_pred HHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeecccc---CccccceEEEEec--------------------
Q 003887 394 RSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVG---MANEDITQVVHVI-------------------- 450 (789)
Q Consensus 394 ~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~---~~~~~i~q~~~~~-------------------- 450 (789)
..++..++ ..++|+||||+......-...++..++........ .............
T Consensus 323 ~~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (590)
T 3h1t_A 323 REILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGRE 401 (590)
T ss_dssp HHHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC----------------
T ss_pred HHHHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccc
Confidence 66666665 47899999998754333334444443322110000 0000000000000
Q ss_pred -------CCC-------cchHHH----HHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCc--------eeeccCCC
Q 003887 451 -------PSD-------AEKLPW----LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFK--------AAALHGDK 504 (789)
Q Consensus 451 -------~~~-------~~k~~~----L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~--------v~~lhg~~ 504 (789)
... ..+... |.+.+......+++||||+++.+|+.++..|.+.+.. +..+||.+
T Consensus 402 ~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~ 481 (590)
T 3h1t_A 402 IPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEE 481 (590)
T ss_dssp -------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTT
T ss_pred cccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCC
Confidence 000 001112 2223333334579999999999999999999876432 77899998
Q ss_pred CHHHHHHHHHHhhcCCcc---EEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCC
Q 003887 505 DQASRMEILQKFKSGVYH---VLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGD 566 (789)
Q Consensus 505 ~~~eR~~~l~~F~~G~~~---VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~ 566 (789)
+. +|..+++.|++|+.+ |||||+++++|+|+|++++||++++|+++..|+||+||++|.+.
T Consensus 482 ~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 482 GK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp HH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred hH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 64 799999999998766 88899999999999999999999999999999999999999873
No 60
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=5.1e-34 Score=292.20 Aligned_cols=207 Identities=37% Similarity=0.571 Sum_probs=187.1
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEE
Q 003887 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (789)
Q Consensus 223 pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vL 302 (789)
|..+|+++++++.+++.|.+.||..|+|+|.++++.++++++++++++||+|||++|++|++..+... ..++++|
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~-----~~~~~~l 76 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE-----RAEVQAV 76 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT-----SCSCCEE
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC-----cCCceEE
Confidence 35689999999999999999999999999999999999999999999999999999999999887542 3467899
Q ss_pred EEcCcHHHHHHHHHHHHHHhhhc----CcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEE
Q 003887 303 ICAPTRELAHQIYLETKKFAKSH----GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVL 378 (789)
Q Consensus 303 Il~PTreLa~Qi~~~~~k~~~~~----~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVl 378 (789)
||+||++|+.|+++.++++.... ++.+.+++|+.....+...+..+++|+|+||++|.+++......+..+++|||
T Consensus 77 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lVi 156 (219)
T 1q0u_A 77 ITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVV 156 (219)
T ss_dssp EECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEE
T ss_pred EEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEE
Confidence 99999999999999999998765 68889999988766555555567899999999999999888888899999999
Q ss_pred cccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeec
Q 003887 379 DEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVG 434 (789)
Q Consensus 379 DEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~ 434 (789)
||||++.+++|...+..++..+++.+|+++||||+++.+.++++.++.+|..+.+.
T Consensus 157 DEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~ 212 (219)
T 1q0u_A 157 DEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVL 212 (219)
T ss_dssp CSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC
T ss_pred cCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEee
Confidence 99999999999999999999999999999999999999999999999999888764
No 61
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=7e-34 Score=305.52 Aligned_cols=204 Identities=32% Similarity=0.469 Sum_probs=183.2
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC--CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCE
Q 003887 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPI 300 (789)
Q Consensus 223 pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~g--rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~ 300 (789)
++.+|++++|++.+++.|...||..|||+|.++||.++.+ +|+|++++||||||++|++|++.++... ..+++
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~-----~~~~~ 164 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKYPQ 164 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT-----SCSCC
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc-----CCCce
Confidence 4688999999999999999999999999999999999998 9999999999999999999999987543 34778
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhhc-CcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhh-ccccccceeEEEE
Q 003887 301 GVICAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM-KALTMSRVTYLVL 378 (789)
Q Consensus 301 vLIl~PTreLa~Qi~~~~~k~~~~~-~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~-~~~~l~~i~~lVl 378 (789)
+|||+|||+||.|+++.++++.... ++.+.+++|+....... ..+++|||+||++|++++.+ ..+.+.++.+|||
T Consensus 165 ~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVl 241 (300)
T 3fmo_B 165 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (300)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEE
T ss_pred EEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEE
Confidence 9999999999999999999998754 68888888887654321 45689999999999999965 5667899999999
Q ss_pred cccchhcc-CCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeec
Q 003887 379 DEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVG 434 (789)
Q Consensus 379 DEah~m~~-~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~ 434 (789)
||||+|++ .+|...+..++..+++.+|+++||||+++.+..+++.++.+|..|.+.
T Consensus 242 DEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 242 DEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp TTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred eCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 99999998 789999999999999999999999999999999999999999988764
No 62
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2.9e-33 Score=283.28 Aligned_cols=202 Identities=35% Similarity=0.596 Sum_probs=187.1
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEE
Q 003887 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (789)
Q Consensus 225 ~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl 304 (789)
.+|++++|++.+++.|...||..|+|+|.++++.+++++++++++|||+|||++|++|++.++... ..++++||+
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~~~~~lil 77 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK-----KDNIQAMVI 77 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT-----SCSCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc-----CCCeeEEEE
Confidence 469999999999999999999999999999999999999999999999999999999999886432 346789999
Q ss_pred cCcHHHHHHHHHHHHHHhhhc-CcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccch
Q 003887 305 APTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (789)
Q Consensus 305 ~PTreLa~Qi~~~~~k~~~~~-~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~ 383 (789)
+||++|+.|+++.++++.... ++.+..++|+.....+...+..+++|+|+||++|..++......+.++++|||||||+
T Consensus 78 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~ 157 (206)
T 1vec_A 78 VPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 157 (206)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH
T ss_pred eCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH
Confidence 999999999999999998766 7889999999988888777788899999999999999988888889999999999999
Q ss_pred hccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEE
Q 003887 384 MFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRV 431 (789)
Q Consensus 384 m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i 431 (789)
+.+.+|...+..++..+++.+|+++||||+|+.+..+++.++.+|..+
T Consensus 158 ~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 158 LLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred hHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 999999999999999999899999999999999999999999999765
No 63
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=1.9e-33 Score=288.60 Aligned_cols=212 Identities=33% Similarity=0.561 Sum_probs=185.0
Q ss_pred CCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCC
Q 003887 218 FDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEE 297 (789)
Q Consensus 218 ~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~ 297 (789)
...|+++.+|+++++++.+++.|.+.||..|+|+|.++++.++++++++++++||+|||++|++|++.++... ..
T Consensus 7 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~-----~~ 81 (224)
T 1qde_A 7 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VK 81 (224)
T ss_dssp BSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----CC
T ss_pred cccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc-----CC
Confidence 4567889999999999999999999999999999999999999999999999999999999999999887443 34
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEE
Q 003887 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLV 377 (789)
Q Consensus 298 gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lV 377 (789)
++++||++||++|+.|+++.+++++...++++..++|+.....+...+.. ++|+|+||++|.+.+......+.++++||
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iV 160 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFI 160 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEE
Confidence 67899999999999999999999988888999999998877666555444 99999999999999988888889999999
Q ss_pred EcccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEeecc
Q 003887 378 LDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGE 435 (789)
Q Consensus 378 lDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~ 435 (789)
|||||++.+++|...+..++..+++.+|+++||||+++.+..+++.++.+|..+.+..
T Consensus 161 iDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 161 LDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp EETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred EcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 9999999999999999999999999999999999999999999999999998887643
No 64
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=1.9e-33 Score=323.60 Aligned_cols=312 Identities=17% Similarity=0.227 Sum_probs=219.4
Q ss_pred CCCcHHHHHHHHHHH----cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003887 246 EKPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il----~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~ 321 (789)
..|+|+|.++++++. .++++|++++||+|||++++. ++..+... ....++|||||+ .|+.||.+++++|
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~-~i~~~~~~-----~~~~~~LIv~P~-~l~~qw~~e~~~~ 108 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIA-VFSDAKKE-----NELTPSLVICPL-SVLKNWEEELSKF 108 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHH-HHHHHHHT-----TCCSSEEEEECS-TTHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHH-HHHHHHhc-----CCCCCEEEEccH-HHHHHHHHHHHHH
Confidence 479999999999884 578999999999999998654 44544332 224568999996 5889999999999
Q ss_pred hhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcC
Q 003887 322 AKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR 401 (789)
Q Consensus 322 ~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~ 401 (789)
+. ++++.+++|+... .....++|+|+||+.|..... +....+++|||||||++.+.. ......+..++
T Consensus 109 ~~--~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l~ 176 (500)
T 1z63_A 109 AP--HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELK 176 (500)
T ss_dssp CT--TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSC
T ss_pred CC--CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHhhc
Confidence 76 4666666665432 112358999999999976443 344578999999999998754 34455555554
Q ss_pred CCceEEEEeccCcH-HHHHH---HH---------------------------------HHhCCCeEEeecccc----Ccc
Q 003887 402 PDRQTLLFSATMPR-KVEKL---AR---------------------------------EILSDPVRVTVGEVG----MAN 440 (789)
Q Consensus 402 ~~~q~ll~SATl~~-~v~~l---~~---------------------------------~~l~~p~~i~i~~~~----~~~ 440 (789)
..+.+++|||+.. .+.++ +. .++. |..+...... ...
T Consensus 177 -~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~-~~~lrr~k~~~~~~~~l 254 (500)
T 1z63_A 177 -SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIIS-PFILRRTKYDKAIINDL 254 (500)
T ss_dssp -EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHT-TTEECCCTTCHHHHTTS
T ss_pred -cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHh-hHeeeecccccchhhcC
Confidence 4678999999743 22222 11 1111 2211110000 001
Q ss_pred ccceEEEEecC--------------------------------------------------------CCcchHHHHHHhc
Q 003887 441 EDITQVVHVIP--------------------------------------------------------SDAEKLPWLLEKL 464 (789)
Q Consensus 441 ~~i~q~~~~~~--------------------------------------------------------~~~~k~~~L~~~L 464 (789)
+........+. ....|...+.+++
T Consensus 255 p~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l 334 (500)
T 1z63_A 255 PDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEII 334 (500)
T ss_dssp CSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHH
Confidence 11111111111 1123444555555
Q ss_pred CCCC-CCCcEEEEecccccHHHHHHHHHHc-CCceeeccCCCCHHHHHHHHHHhhcC-Ccc-EEEeehhhhccCCCCCcc
Q 003887 465 PGMI-DDGDVLVFASKKTTVDEIESQLAQK-GFKAAALHGDKDQASRMEILQKFKSG-VYH-VLIATDVAARGLDIKSIK 540 (789)
Q Consensus 465 ~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~-g~~v~~lhg~~~~~eR~~~l~~F~~G-~~~-VLVaT~v~~~GlDI~~v~ 540 (789)
.... .+.++||||++...++.++..|... ++.+..+||++++.+|.++++.|+++ ..+ +||+|+++++|||++.++
T Consensus 335 ~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~ 414 (500)
T 1z63_A 335 EEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSAN 414 (500)
T ss_dssp HHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCS
T ss_pred HHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCC
Confidence 4432 3569999999999999999999885 99999999999999999999999998 555 799999999999999999
Q ss_pred EEEEEcCCCCHHHHHHHHhhcCCCCCCC-eEEEEEEccc
Q 003887 541 SVVNFDIARDMDMHVHRIGRTGRAGDKD-GTAYTLVTQK 578 (789)
Q Consensus 541 ~VI~~d~p~s~~~y~QriGR~gR~G~~~-G~~i~l~~~~ 578 (789)
+||+||+|||+..|+||+||++|.|++. ..+|.|++..
T Consensus 415 ~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 415 RVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp EEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred EEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 9999999999999999999999999543 4456677665
No 65
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=8.5e-33 Score=279.91 Aligned_cols=204 Identities=41% Similarity=0.685 Sum_probs=187.4
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEc
Q 003887 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305 (789)
Q Consensus 226 sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~ 305 (789)
+|+++++++.+++.|.+.||..|+|+|.++++.+++++++++++|||+|||++|++|++.++..... ...++++||++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~--~~~~~~~lil~ 79 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQE--RGRKPRALVLT 79 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC--TTCCCSEEEEC
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccc--cCCCCcEEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999998764321 23478899999
Q ss_pred CcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhc
Q 003887 306 PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (789)
Q Consensus 306 PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~ 385 (789)
||++|+.|+++.+++++. .+++..++|+.....+...+..+++|+|+||++|.+++......+.++++|||||||++.
T Consensus 80 P~~~L~~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~ 157 (207)
T 2gxq_A 80 PTRELALQVASELTAVAP--HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEML 157 (207)
T ss_dssp SSHHHHHHHHHHHHHHCT--TSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHH
T ss_pred CCHHHHHHHHHHHHHHhh--cceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhh
Confidence 999999999999999976 378889999998888878888899999999999999998888889999999999999999
Q ss_pred cCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEee
Q 003887 386 DLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTV 433 (789)
Q Consensus 386 ~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i 433 (789)
+++|...+..++..+++.+|+++||||+++.+..+++.++.+|..+.+
T Consensus 158 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 158 SMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred ccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 999999999999999999999999999999999999999999988765
No 66
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=1.1e-33 Score=348.09 Aligned_cols=316 Identities=19% Similarity=0.195 Sum_probs=219.0
Q ss_pred CCCcHHHHHHHHHHHcC--CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhh
Q 003887 246 EKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~g--rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~ 323 (789)
..|+|+|.+++.+++.. .++|++++||+|||++++..+...+.. ....++|||||+ .|+.||..++.+++
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~------g~~~rvLIVvP~-sLl~Qw~~E~~~~f- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS------GAAERVLIIVPE-TLQHQWLVEMLRRF- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT------SSCCCEEEECCT-TTHHHHHHHHHHHS-
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh------CCCCeEEEEeCH-HHHHHHHHHHHHHh-
Confidence 47999999999998864 589999999999999987766555432 223469999999 99999999997765
Q ss_pred hcCcEEEEEEcCCChHHHHH---HHhcCCcEEEeCHHHHHHHHhh-ccccccceeEEEEcccchhccCCChH-HHHHHHh
Q 003887 324 SHGIRVSAVYGGMSKLDQFK---ELKAGCEIVIATPGRLIDMLKM-KALTMSRVTYLVLDEADRMFDLGFEP-QIRSIVG 398 (789)
Q Consensus 324 ~~~i~v~~~~gg~~~~~~~~---~l~~~~dIiV~Tp~~L~~~l~~-~~~~l~~i~~lVlDEah~m~~~~f~~-~i~~il~ 398 (789)
++.+.++.++... .... ......+|+|+|++.|...... ..+....+++|||||||++.+..... ....++.
T Consensus 224 --~l~v~v~~~~~~~-~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~ 300 (968)
T 3dmq_A 224 --NLRFALFDDERYA-EAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIE 300 (968)
T ss_dssp --CCCCEECCHHHHH-HHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHH
T ss_pred --CCCEEEEccchhh-hhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHH
Confidence 5666655443211 1111 1112479999999988642211 22345679999999999997655331 1122233
Q ss_pred hc-CCCceEEEEeccCcH-H---HHHHHHHH----------------------------hCC-C----------------
Q 003887 399 QI-RPDRQTLLFSATMPR-K---VEKLAREI----------------------------LSD-P---------------- 428 (789)
Q Consensus 399 ~~-~~~~q~ll~SATl~~-~---v~~l~~~~----------------------------l~~-p---------------- 428 (789)
.+ ....+++++|||+.+ . +..++..+ ... +
T Consensus 301 ~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~ 380 (968)
T 3dmq_A 301 QLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQ 380 (968)
T ss_dssp HHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTT
T ss_pred HHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcch
Confidence 33 245679999999742 1 11111110 000 0
Q ss_pred -----------------------------------eEEeecccc---CccccceEEEE----------------------
Q 003887 429 -----------------------------------VRVTVGEVG---MANEDITQVVH---------------------- 448 (789)
Q Consensus 429 -----------------------------------~~i~i~~~~---~~~~~i~q~~~---------------------- 448 (789)
+.+...... .....+.....
T Consensus 381 ~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (968)
T 3dmq_A 381 DIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSA 460 (968)
T ss_dssp CSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSG
T ss_pred hhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhh
Confidence 000000000 00000000000
Q ss_pred ----------------------ecCCCcchHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHH-cCCceeeccCCCC
Q 003887 449 ----------------------VIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQ-KGFKAAALHGDKD 505 (789)
Q Consensus 449 ----------------------~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~-~g~~v~~lhg~~~ 505 (789)
.......|...|.+++.. ...+++||||+++..++.++..|.. .++.+..+||+|+
T Consensus 461 ~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~ 539 (968)
T 3dmq_A 461 EDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS-HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMS 539 (968)
T ss_dssp GGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSC
T ss_pred HHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 011233467777777765 3567999999999999999999995 5999999999999
Q ss_pred HHHHHHHHHHhhcCC--ccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEE
Q 003887 506 QASRMEILQKFKSGV--YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTL 574 (789)
Q Consensus 506 ~~eR~~~l~~F~~G~--~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l 574 (789)
+.+|..+++.|++|+ ++|||||+++++|||+|++++||+||+|+++..|+||+||+||.|+ .+.|+++
T Consensus 540 ~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq-~~~v~v~ 609 (968)
T 3dmq_A 540 IIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQ-AHDIQIH 609 (968)
T ss_dssp TTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSS-CSCCEEE
T ss_pred HHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCC-CceEEEE
Confidence 999999999999998 9999999999999999999999999999999999999999999994 4544444
No 67
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-32 Score=332.50 Aligned_cols=372 Identities=17% Similarity=0.236 Sum_probs=248.6
Q ss_pred ccccCChhccCCCHHHHHHHHHHcCccc---ccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHH----
Q 003887 188 DFYQDSASISGMSEQDVMEYKKSLAIRV---SGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIIL---- 260 (789)
Q Consensus 188 ~fy~~~~~i~~~s~~~~~~~r~~~~i~v---~~~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il---- 260 (789)
.-|.....+..+..+.+..+........ .....+.....|..+...+... .-.+|+|||.+++.+++
T Consensus 180 ~tWe~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~Lr~yQ~egv~~l~~~~~ 253 (800)
T 3mwy_W 180 ATWENATDIVKLAPEQVKHFQNRENSKILPQYSSNYTSQRPRFEKLSVQPPFI------KGGELRDFQLTGINWMAFLWS 253 (800)
T ss_dssp CBCCBHHHHTTTCHHHHHHHHHTTTCTTCSTTCCCCCSCCCCCCCCSSCCTTC------CSSCCCTHHHHHHHHHHHHHT
T ss_pred ccccchhhhhhhhHHHHHHHHHhhhcccCCcchhcccccCCcccccccCCCcc------CCCCcCHHHHHHHHHHHHHhh
Confidence 3444444555666777777766432211 1111122222344332222111 11479999999999887
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHH
Q 003887 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~ 340 (789)
.++++|++++||+|||++++..+...+... .....+||||| ..|+.||.+++.+|+. ++++.+++|......
T Consensus 254 ~~~~~ILademGlGKT~~ai~~i~~l~~~~-----~~~~~~LIV~P-~sll~qW~~E~~~~~p--~~~v~~~~g~~~~r~ 325 (800)
T 3mwy_W 254 KGDNGILADEMGLGKTVQTVAFISWLIFAR-----RQNGPHIIVVP-LSTMPAWLDTFEKWAP--DLNCICYMGNQKSRD 325 (800)
T ss_dssp TTCCEEECCCTTSSTTHHHHHHHHHHHHHH-----SCCSCEEEECC-TTTHHHHHHHHHHHST--TCCEEECCCSSHHHH
T ss_pred cCCCEEEEeCCCcchHHHHHHHHHHHHHhc-----CCCCCEEEEEC-chHHHHHHHHHHHHCC--CceEEEEeCCHHHHH
Confidence 789999999999999998655543332221 12344799999 5788899999999985 577777777665554
Q ss_pred HHHHHh------------cCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEE
Q 003887 341 QFKELK------------AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLL 408 (789)
Q Consensus 341 ~~~~l~------------~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll 408 (789)
.+.... ..++|+|+||+.|..... .+....+.+|||||||++.+. ...+...+..++ ....++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~--~l~~~~w~~vIvDEaH~lkn~--~s~~~~~l~~l~-~~~rl~ 400 (800)
T 3mwy_W 326 TIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRA--ELGSIKWQFMAVDEAHRLKNA--ESSLYESLNSFK-VANRML 400 (800)
T ss_dssp HHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHH--HHHTSEEEEEEETTGGGGCCS--SSHHHHHHTTSE-EEEEEE
T ss_pred HHHHHHhhccccccccccccCCEEEecHHHHHhhHH--HHhcCCcceeehhhhhhhcCc--hhHHHHHHHHhh-hccEEE
Confidence 444321 247899999999976432 233447899999999999764 335555666664 445688
Q ss_pred EeccCc-H---HHHHHHHHHhCC-----------------------------CeEEeecc--ccCccccceEEEEecC--
Q 003887 409 FSATMP-R---KVEKLAREILSD-----------------------------PVRVTVGE--VGMANEDITQVVHVIP-- 451 (789)
Q Consensus 409 ~SATl~-~---~v~~l~~~~l~~-----------------------------p~~i~i~~--~~~~~~~i~q~~~~~~-- 451 (789)
+|||+- + ++..++..+... |..+.... .....+........+.
T Consensus 401 LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls 480 (800)
T 3mwy_W 401 ITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELS 480 (800)
T ss_dssp ECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCC
T ss_pred eeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCC
Confidence 999972 2 222222222111 11100000 0000001111111110
Q ss_pred ------------------------------------------------------------------------CCcchHHH
Q 003887 452 ------------------------------------------------------------------------SDAEKLPW 459 (789)
Q Consensus 452 ------------------------------------------------------------------------~~~~k~~~ 459 (789)
....|+..
T Consensus 481 ~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~ 560 (800)
T 3mwy_W 481 DVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVL 560 (800)
T ss_dssp HHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHH
Confidence 01335555
Q ss_pred HHHhcCCCCC-CCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCc---cEEEeehhhhccCC
Q 003887 460 LLEKLPGMID-DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVY---HVLIATDVAARGLD 535 (789)
Q Consensus 460 L~~~L~~~~~-~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~---~VLVaT~v~~~GlD 535 (789)
|..+|..... +.++||||+....++.|..+|...++.+..|||.++..+|..+++.|+++.. .+||+|.++++|||
T Consensus 561 L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlN 640 (800)
T 3mwy_W 561 LDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGIN 640 (800)
T ss_dssp HHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCC
T ss_pred HHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCC
Confidence 5555554433 4599999999999999999999999999999999999999999999998654 59999999999999
Q ss_pred CCCccEEEEEcCCCCHHHHHHHHhhcCCCCCC-CeEEEEEEccc
Q 003887 536 IKSIKSVVNFDIARDMDMHVHRIGRTGRAGDK-DGTAYTLVTQK 578 (789)
Q Consensus 536 I~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~-~G~~i~l~~~~ 578 (789)
++.+++||+||+|||+..++||+||++|.|++ ...+|.|++..
T Consensus 641 L~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 641 LMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp CTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred ccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 99999999999999999999999999999954 45667778765
No 68
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.9e-32 Score=288.81 Aligned_cols=204 Identities=36% Similarity=0.572 Sum_probs=182.8
Q ss_pred CCcccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEE
Q 003887 225 KTFEDCG--FSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (789)
Q Consensus 225 ~sf~~~~--l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vL 302 (789)
.+|++++ +++.+++.|...||.+|+|+|.++++.++.++|+|++++||+|||++|++|++..+...+.. ...++++|
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~-~~~~~~~l 130 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM-PRNGTGVL 130 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC-GGGCCCEE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc-ccCCceEE
Confidence 3466665 99999999999999999999999999999999999999999999999999999998764322 23477899
Q ss_pred EEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhc-cccccceeEEEEccc
Q 003887 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK-ALTMSRVTYLVLDEA 381 (789)
Q Consensus 303 Il~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~-~~~l~~i~~lVlDEa 381 (789)
||+||++||.|+++.+++++...++.+..++|+.....+...+..+++|+|+||++|.+++... .+.+.++++||||||
T Consensus 131 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEa 210 (262)
T 3ly5_A 131 ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEA 210 (262)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSH
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcCh
Confidence 9999999999999999999988889999999999998888888889999999999999988765 367889999999999
Q ss_pred chhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCe
Q 003887 382 DRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPV 429 (789)
Q Consensus 382 h~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~ 429 (789)
|+|++++|...+..++..++..+|+++||||+++.+..+++.++.++.
T Consensus 211 h~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 211 DRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp HHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred HHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999987654
No 69
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.5e-32 Score=281.22 Aligned_cols=208 Identities=30% Similarity=0.536 Sum_probs=183.7
Q ss_pred CCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCC
Q 003887 220 VPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGP 299 (789)
Q Consensus 220 ~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp 299 (789)
.+....+|++++|++.+++.|.+.||..|+|+|.++++.++++++++++++||+|||++|++|++..+... ..++
T Consensus 9 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~-----~~~~ 83 (220)
T 1t6n_A 9 VSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQV 83 (220)
T ss_dssp -----CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC-----TTCC
T ss_pred ccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc-----CCCE
Confidence 34455679999999999999999999999999999999999999999999999999999999999876432 2356
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhhc-CcEEEEEEcCCChHHHHHHHhc-CCcEEEeCHHHHHHHHhhccccccceeEEE
Q 003887 300 IGVICAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLV 377 (789)
Q Consensus 300 ~vLIl~PTreLa~Qi~~~~~k~~~~~-~i~v~~~~gg~~~~~~~~~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lV 377 (789)
++|||+||++|+.||+++++++.... ++++..++|+.....+...+.. .++|+|+||++|..++......+.++++||
T Consensus 84 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lV 163 (220)
T 1t6n_A 84 SVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFI 163 (220)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEE
Confidence 89999999999999999999998765 7899999999888777776665 469999999999999988888899999999
Q ss_pred Ecccchhcc-CCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEe
Q 003887 378 LDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVT 432 (789)
Q Consensus 378 lDEah~m~~-~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~ 432 (789)
|||||++++ .+|...+..++..+++.+|+++||||+++.+..+++.++.+|..+.
T Consensus 164 iDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 164 LDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp EESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred EcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 999999987 4788888899998888999999999999999999999999998764
No 70
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.8e-31 Score=315.67 Aligned_cols=325 Identities=16% Similarity=0.178 Sum_probs=222.7
Q ss_pred CCCcHHHHHHHHHHH---------cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHH
Q 003887 246 EKPTSIQCQALPIIL---------SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYL 316 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il---------~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~ 316 (789)
..|+|+|.+++.+++ .++.+|++++||+|||++++..+. +++.+.........++|||||+ .|+.||.+
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~-~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~ 131 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIW-TLLKQSPDCKPEIDKVIVVSPS-SLVRNWYN 131 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHH-HHHHCCTTSSCSCSCEEEEECH-HHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHH-HHHHhCccccCCCCcEEEEecH-HHHHHHHH
Confidence 479999999999985 346799999999999999665554 4444322222233468999997 88899999
Q ss_pred HHHHHhhhcCcEEEEEEcCCChHH--HHHHHhc------CCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCC
Q 003887 317 ETKKFAKSHGIRVSAVYGGMSKLD--QFKELKA------GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG 388 (789)
Q Consensus 317 ~~~k~~~~~~i~v~~~~gg~~~~~--~~~~l~~------~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~ 388 (789)
++.+|+.. .+.++.+++|..... .+..+.. .++|+|+||+.|.... ..+....+++|||||||++.+..
T Consensus 132 E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~ikn~~ 208 (644)
T 1z3i_X 132 EVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLKNSD 208 (644)
T ss_dssp HHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCCTTC
T ss_pred HHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceecCChh
Confidence 99999875 466777777654321 1222221 3789999999987643 23344578999999999987643
Q ss_pred ChHHHHHHHhhcCCCceEEEEeccCcHH-HHHH------------------HHHHhC-----------------------
Q 003887 389 FEPQIRSIVGQIRPDRQTLLFSATMPRK-VEKL------------------AREILS----------------------- 426 (789)
Q Consensus 389 f~~~i~~il~~~~~~~q~ll~SATl~~~-v~~l------------------~~~~l~----------------------- 426 (789)
......+..++ ..+.+++|||+-.+ +.++ .+.|..
T Consensus 209 --~~~~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~ 285 (644)
T 1z3i_X 209 --NQTYLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQ 285 (644)
T ss_dssp --HHHHHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHH
T ss_pred --hHHHHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHH
Confidence 34455555554 45679999997321 1100 000000
Q ss_pred ------CCeEEeec--cccCccccceEEEEecC-----------------------------------------------
Q 003887 427 ------DPVRVTVG--EVGMANEDITQVVHVIP----------------------------------------------- 451 (789)
Q Consensus 427 ------~p~~i~i~--~~~~~~~~i~q~~~~~~----------------------------------------------- 451 (789)
.|..+.-. ......+.....+..+.
T Consensus 286 ~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l 365 (644)
T 1z3i_X 286 ELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPAL 365 (644)
T ss_dssp HHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHH
T ss_pred HHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHH
Confidence 00000000 00000000000111100
Q ss_pred ------------------------------CCcchHHHHHHhcCCC--CCCCcEEEEecccccHHHHHHHHHHcCCceee
Q 003887 452 ------------------------------SDAEKLPWLLEKLPGM--IDDGDVLVFASKKTTVDEIESQLAQKGFKAAA 499 (789)
Q Consensus 452 ------------------------------~~~~k~~~L~~~L~~~--~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~ 499 (789)
....|+..|..++... ....++||||+++..++.|...|...++.+..
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~ 445 (644)
T 1z3i_X 366 IYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVR 445 (644)
T ss_dssp HHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEE
Confidence 0112333333333222 13569999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHhhcCCc---cEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCC-CeEEEEEE
Q 003887 500 LHGDKDQASRMEILQKFKSGVY---HVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDK-DGTAYTLV 575 (789)
Q Consensus 500 lhg~~~~~eR~~~l~~F~~G~~---~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~-~G~~i~l~ 575 (789)
+||++++.+|..+++.|+++.. .+||+|+++++|||++.+++||+||+|||+..|.|++||++|.|++ ...+|.|+
T Consensus 446 l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv 525 (644)
T 1z3i_X 446 LDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLL 525 (644)
T ss_dssp ECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEE
T ss_pred EeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEE
Confidence 9999999999999999999865 4899999999999999999999999999999999999999999954 35667777
Q ss_pred ccc
Q 003887 576 TQK 578 (789)
Q Consensus 576 ~~~ 578 (789)
+..
T Consensus 526 ~~~ 528 (644)
T 1z3i_X 526 STG 528 (644)
T ss_dssp ETT
T ss_pred ECC
Confidence 765
No 71
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=6.1e-33 Score=326.44 Aligned_cols=283 Identities=20% Similarity=0.251 Sum_probs=209.1
Q ss_pred HHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcC
Q 003887 256 LPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGG 335 (789)
Q Consensus 256 i~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg 335 (789)
....+.++++|++||||||||+. ++..+... +.+||++|||+||.|+++.+++. ++.+..++|+
T Consensus 149 ~ar~l~rk~vlv~apTGSGKT~~----al~~l~~~--------~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~ 212 (677)
T 3rc3_A 149 DARAMQRKIIFHSGPTNSGKTYH----AIQKYFSA--------KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGE 212 (677)
T ss_dssp HHHTSCCEEEEEECCTTSSHHHH----HHHHHHHS--------SSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSS
T ss_pred HHHhcCCCEEEEEcCCCCCHHHH----HHHHHHhc--------CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECC
Confidence 34557889999999999999983 34444332 23599999999999999998775 7888889887
Q ss_pred CChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcC-CCceEEEEeccCc
Q 003887 336 MSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR-PDRQTLLFSATMP 414 (789)
Q Consensus 336 ~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~-~~~q~ll~SATl~ 414 (789)
...... .-....+++++|++.+. .+..+++|||||||+|.+.+|...+..++..++ ...|++++|||.+
T Consensus 213 ~~~iv~--TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~ 282 (677)
T 3rc3_A 213 ERVTVQ--PNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAID 282 (677)
T ss_dssp CEECCS--TTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHH
T ss_pred eeEEec--CCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHH
Confidence 654100 00012667777764331 346789999999999999999999998888887 7789999999953
Q ss_pred HHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcC
Q 003887 415 RKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKG 494 (789)
Q Consensus 415 ~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g 494 (789)
.+..++... .....+..... .... ..... .+ ..+... ..+.||||+++..++.++..|.+.+
T Consensus 283 -~i~~l~~~~-~~~~~v~~~~r------~~~l-~~~~~---~l----~~l~~~--~~g~iIf~~s~~~ie~la~~L~~~g 344 (677)
T 3rc3_A 283 -LVMELMYTT-GEEVEVRDYKR------LTPI-SVLDH---AL----ESLDNL--RPGDCIVCFSKNDIYSVSRQIEIRG 344 (677)
T ss_dssp -HHHHHHHHH-TCCEEEEECCC------SSCE-EECSS---CC----CSGGGC--CTTEEEECSSHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHhc-CCceEEEEeee------cchH-HHHHH---HH----HHHHhc--CCCCEEEEcCHHHHHHHHHHHHhcC
Confidence 445554443 33333321100 0000 00000 00 111111 2456889999999999999999999
Q ss_pred CceeeccCCCCHHHHHHHHHHhhc--CCccEEEeehhhhccCCCCCccEEEEEcC--------------CCCHHHHHHHH
Q 003887 495 FKAAALHGDKDQASRMEILQKFKS--GVYHVLIATDVAARGLDIKSIKSVVNFDI--------------ARDMDMHVHRI 558 (789)
Q Consensus 495 ~~v~~lhg~~~~~eR~~~l~~F~~--G~~~VLVaT~v~~~GlDI~~v~~VI~~d~--------------p~s~~~y~Qri 558 (789)
+.+..+||+|++.+|..+++.|++ |.++|||||+++++|||| ++++||++++ |.+...|+||+
T Consensus 345 ~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~ 423 (677)
T 3rc3_A 345 LESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIA 423 (677)
T ss_dssp CCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHH
T ss_pred CCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHh
Confidence 999999999999999999999999 889999999999999999 9999999999 78999999999
Q ss_pred hhcCCCCCC--CeEEEEEEccccHHHHH
Q 003887 559 GRTGRAGDK--DGTAYTLVTQKEARFAG 584 (789)
Q Consensus 559 GR~gR~G~~--~G~~i~l~~~~d~~~~~ 584 (789)
||+||.|.. .|.|+.+. ..+...+.
T Consensus 424 GRAGR~g~~g~~G~v~~l~-~~d~~~~~ 450 (677)
T 3rc3_A 424 GRAGRFSSRFKEGEVTTMN-HEDLSLLK 450 (677)
T ss_dssp TTBTCTTSSCSSEEEEESS-TTHHHHHH
T ss_pred cCCCCCCCCCCCEEEEEEe-cchHHHHH
Confidence 999999943 46666554 44444433
No 72
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.97 E-value=3.8e-30 Score=294.78 Aligned_cols=317 Identities=20% Similarity=0.231 Sum_probs=233.7
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003887 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (789)
Q Consensus 247 ~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~ 326 (789)
.|+++|..+.-.+..|+ |....||+|||+++.+|++...+. |..|.||+||+.||.|-++++..+...+|
T Consensus 75 r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~--------G~~vhVvT~ndyLA~rdae~m~~l~~~Lg 144 (822)
T 3jux_A 75 RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI--------GKGVHLVTVNDYLARRDALWMGPVYLFLG 144 (822)
T ss_dssp CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc--------CCceEEEeccHHHHHhHHHHHHHHHHHhC
Confidence 68999999998888887 889999999999999999866543 56699999999999999999999999999
Q ss_pred cEEEEEEcC--------------------------------------------------CChHHHHHHHhcCCcEEEeCH
Q 003887 327 IRVSAVYGG--------------------------------------------------MSKLDQFKELKAGCEIVIATP 356 (789)
Q Consensus 327 i~v~~~~gg--------------------------------------------------~~~~~~~~~l~~~~dIiV~Tp 356 (789)
++|.+++.. .+..+ .++. -.|||+.+|.
T Consensus 145 lsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e-rr~a-Y~~DItYgTn 222 (822)
T 3jux_A 145 LRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEIT-RKEA-YLCDVTYGTN 222 (822)
T ss_dssp CCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCC-HHHH-HHSSEEEEEH
T ss_pred CEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHH-HHHH-hcCCCEEccC
Confidence 999999982 11111 1111 2389999999
Q ss_pred HHHH-HHHhhc------cccccceeEEEEcccchhcc-C--------------------------------CC-------
Q 003887 357 GRLI-DMLKMK------ALTMSRVTYLVLDEADRMFD-L--------------------------------GF------- 389 (789)
Q Consensus 357 ~~L~-~~l~~~------~~~l~~i~~lVlDEah~m~~-~--------------------------------~f------- 389 (789)
.-|- +.|+.+ ......+.+.||||+|.|+- . +|
T Consensus 223 ~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~ 302 (822)
T 3jux_A 223 NEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKAR 302 (822)
T ss_dssp HHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSS
T ss_pred cchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccC
Confidence 8874 444322 22345689999999997621 0 00
Q ss_pred -----h---HHHHHHH------------------hh------cCC-----------------------------------
Q 003887 390 -----E---PQIRSIV------------------GQ------IRP----------------------------------- 402 (789)
Q Consensus 390 -----~---~~i~~il------------------~~------~~~----------------------------------- 402 (789)
. ..+..++ .. +..
T Consensus 303 ~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQai 382 (822)
T 3jux_A 303 TIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAI 382 (822)
T ss_dssp CEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHH
T ss_pred eEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHH
Confidence 0 0000000 00 000
Q ss_pred --------------------------CceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcch
Q 003887 403 --------------------------DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEK 456 (789)
Q Consensus 403 --------------------------~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k 456 (789)
-.++.+||+|+......+...|-. . .+.+. .......+.+...++.....|
T Consensus 383 EaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l-~-vv~IP-tnkp~~R~d~~d~vy~t~~eK 459 (822)
T 3jux_A 383 EAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGM-E-VVVIP-THKPMIRKDHDDLVFRTQKEK 459 (822)
T ss_dssp HHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCC-C-EEECC-CSSCCCCEECCCEEESSHHHH
T ss_pred HHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCC-e-EEEEC-CCCCcceeecCcEEEecHHHH
Confidence 036899999998877666555532 2 23332 222222333322334456778
Q ss_pred HHHHHHhcCCCC-CCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCC
Q 003887 457 LPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLD 535 (789)
Q Consensus 457 ~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlD 535 (789)
+..++..+.... ...++||||+++..++.|+..|.+.|+++.+|||+..+.++..+...|+.| .|||||++++||+|
T Consensus 460 ~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtD 537 (822)
T 3jux_A 460 YEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTD 537 (822)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCC
T ss_pred HHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcC
Confidence 888888887543 356899999999999999999999999999999996555555555555555 69999999999999
Q ss_pred CC--------CccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHH
Q 003887 536 IK--------SIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581 (789)
Q Consensus 536 I~--------~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~ 581 (789)
|+ +..+||+|+.|.+...|+||+|||||.| .+|.+++|++..|..
T Consensus 538 I~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG-~~G~a~~fvsleD~l 590 (822)
T 3jux_A 538 IKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQG-DPGESIFFLSLEDDL 590 (822)
T ss_dssp CCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSS-CCCEEEEEEETTSHH
T ss_pred ccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCC-CCeeEEEEechhHHH
Confidence 98 6679999999999999999999999999 689999999998843
No 73
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.97 E-value=1.7e-29 Score=308.94 Aligned_cols=324 Identities=14% Similarity=0.127 Sum_probs=219.8
Q ss_pred HHHHHHHHHcC-------CCCCcHHHHHHHHHHHc--------------CCCEEEEccCCChhhHHHHHHHHHHHhcCcc
Q 003887 234 TQLMHAISKQG-------YEKPTSIQCQALPIILS--------------GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPE 292 (789)
Q Consensus 234 ~~l~~~l~~~g-------~~~ptpiQ~~ai~~il~--------------grdvl~~a~TGsGKTla~llp~l~~l~~~~~ 292 (789)
+.+++.|...- ...|+|+|..|++.++. +++++++++||||||+++ ++++..+...
T Consensus 251 ~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~-- 327 (1038)
T 2w00_A 251 HTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL-- 327 (1038)
T ss_dssp HHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC--
T ss_pred HHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc--
Confidence 44555555431 23599999999999875 378999999999999996 6666544321
Q ss_pred cccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHh-cCCcEEEeCHHHHHHHHhhcc--cc
Q 003887 293 LQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK-AGCEIVIATPGRLIDMLKMKA--LT 369 (789)
Q Consensus 293 ~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~-~~~dIiV~Tp~~L~~~l~~~~--~~ 369 (789)
...+++|||||+++|+.||.+++.++... .+.++.+.......+. .+.+|+|+||++|..++.... ..
T Consensus 328 ---~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~ 398 (1038)
T 2w00_A 328 ---DFIDKVFFVVDRKDLDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPV 398 (1038)
T ss_dssp ---TTCCEEEEEECGGGCCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGG
T ss_pred ---CCCceEEEEeCcHHHHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhc
Confidence 23468999999999999999999988642 2335555555555564 468999999999999876532 24
Q ss_pred ccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEeccCcHHHH----HHHHHHhCCC-----------------
Q 003887 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVE----KLAREILSDP----------------- 428 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~----~l~~~~l~~p----------------- 428 (789)
+..+.+|||||||++.. ......++..++ ..++++||||+..... .....+++++
T Consensus 399 ~~~~~lvIiDEAHrs~~---~~~~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p 474 (1038)
T 2w00_A 399 YNQQVVFIFDECHRSQF---GEAQKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLK 474 (1038)
T ss_dssp GGSCEEEEEESCCTTHH---HHHHHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCC
T ss_pred cccccEEEEEccchhcc---hHHHHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCC
Confidence 56789999999999764 233455555554 5899999999874321 1122333332
Q ss_pred eEEeeccccCccc------c------ceEEEEecCCCcchHHHHHHhc----CCC-------CCCCcEEEEecccccHHH
Q 003887 429 VRVTVGEVGMANE------D------ITQVVHVIPSDAEKLPWLLEKL----PGM-------IDDGDVLVFASKKTTVDE 485 (789)
Q Consensus 429 ~~i~i~~~~~~~~------~------i~q~~~~~~~~~~k~~~L~~~L----~~~-------~~~~kvLVF~~s~~~a~~ 485 (789)
..+.......... + +.+. ..+ ....+...+...+ ... ....++||||+++..|..
T Consensus 475 ~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~-~~l-~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~ 552 (1038)
T 2w00_A 475 FKVDYNDVRPQFKSLETETDEKKLSAAENQ-QAF-LHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKA 552 (1038)
T ss_dssp EEEEECCCCGGGHHHHTCCCHHHHHHTCST-TTT-TCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHH
T ss_pred eEEEEEeccchhhhccccccHHHHHHHHHH-HHh-cCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHH
Confidence 2211110000000 0 0000 000 0112222222221 111 123579999999999999
Q ss_pred HHHHHHHcC------------Cce-eeccCC----------C----------CH--------------------------
Q 003887 486 IESQLAQKG------------FKA-AALHGD----------K----------DQ-------------------------- 506 (789)
Q Consensus 486 l~~~L~~~g------------~~v-~~lhg~----------~----------~~-------------------------- 506 (789)
++..|.+.+ +.+ .++||+ + ++
T Consensus 553 ~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~ 632 (1038)
T 2w00_A 553 YYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSN 632 (1038)
T ss_dssp HHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHH
T ss_pred HHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccch
Confidence 999997754 455 455643 2 22
Q ss_pred ---HHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCC---CeEEEEEEc
Q 003887 507 ---ASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDK---DGTAYTLVT 576 (789)
Q Consensus 507 ---~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~---~G~~i~l~~ 576 (789)
.+|..++++|++|+++|||+|+++.+|+|+|.+ +|+++|.|.....|+|++||++|.+.. .|.++.|+.
T Consensus 633 ~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 633 GFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp HHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred hhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 248889999999999999999999999999999 788999999999999999999999832 377777665
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.95 E-value=3.1e-26 Score=266.80 Aligned_cols=130 Identities=19% Similarity=0.253 Sum_probs=113.8
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHh
Q 003887 243 QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (789)
Q Consensus 243 ~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~ 322 (789)
.|+ .|+++|..++|.+++|+ |+.+.||+|||++|++|++...+. +..|+||+||++||.|+++++..++
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~--------G~qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT--------GKGVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT--------CSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh--------CCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 588 99999999999999998 999999999999999999765532 4569999999999999999999999
Q ss_pred hhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHH-HHHHhhcc------cccc---ceeEEEEcccchhc
Q 003887 323 KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMKA------LTMS---RVTYLVLDEADRMF 385 (789)
Q Consensus 323 ~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L-~~~l~~~~------~~l~---~i~~lVlDEah~m~ 385 (789)
..+++++.+++||.+.. .+....++||+|+||++| ++++..+. +.+. .+.++||||||+|+
T Consensus 145 ~~lGLsv~~i~Gg~~~~--~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 145 RGLGLSVGVIQHASTPA--ERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HTTTCCEEECCTTCCHH--HHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HhcCCeEEEEeCCCCHH--HHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 99999999999998753 344455799999999999 88887653 4577 89999999999986
No 75
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.95 E-value=2.4e-27 Score=237.48 Aligned_cols=180 Identities=36% Similarity=0.540 Sum_probs=147.8
Q ss_pred HHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeecc
Q 003887 422 REILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALH 501 (789)
Q Consensus 422 ~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lh 501 (789)
..|+.+|..+.++........|.|.+..+. ...|...|.++|... .+++||||+++..++.++..|...++.+..+|
T Consensus 9 ~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~-~~~K~~~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lh 85 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMGAASLDVIQEVEYVK-EEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIH 85 (191)
T ss_dssp -------------------CCSEEEEEECC-GGGHHHHHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred ccccCCCEEEEECCCCCCCcCceEEEEEcC-hHHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEe
Confidence 457888999998888888889999998875 467999999988763 46899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccc-cH
Q 003887 502 GDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK-EA 580 (789)
Q Consensus 502 g~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~-d~ 580 (789)
|++++.+|..+++.|++|+++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.| +.|.|++|+++. +.
T Consensus 86 g~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g-~~g~~i~l~~~~~~~ 164 (191)
T 2p6n_A 86 GGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSG-NTGIATTFINKACDE 164 (191)
T ss_dssp TTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC----CCEEEEEECTTSCH
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCC-CCcEEEEEEcCchhH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 579999999986 78
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHH
Q 003887 581 RFAGELVNSLIAAGQNVSMELMDLA 605 (789)
Q Consensus 581 ~~~~~l~~~L~~~~~~vp~~l~~~a 605 (789)
.++..+.+.|...++.+|++|.+++
T Consensus 165 ~~~~~l~~~l~~~~~~~p~~l~~~~ 189 (191)
T 2p6n_A 165 SVLMDLKALLLEAKQKVPPVLQVLH 189 (191)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHSTT
T ss_pred HHHHHHHHHHHHccCcCCHHHHhhc
Confidence 8999999999999999999987654
No 76
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.95 E-value=1e-26 Score=275.03 Aligned_cols=176 Identities=20% Similarity=0.278 Sum_probs=135.3
Q ss_pred CCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHHHHhcCCCC-CCCcEEEEeccc
Q 003887 402 PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKK 480 (789)
Q Consensus 402 ~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~ 480 (789)
..+|+++||||+++..... ........+.......+. +. +.....+...|+..|.... ...++||||+++
T Consensus 379 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~p~----i~-v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 449 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH----SGRVVEQIIRPTGLLDPL----VR-VKPTENQILDLMEGIRERAARGERTLVTVLTV 449 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH----CSEEEEECSCTTCCCCCE----EE-EECSTTHHHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred hcCCEEEEecCCCHHHHHh----hhCeeeeeeccCCCCCCe----EE-EecccchHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 3679999999998653211 111111111111111111 11 2223345566666555433 456999999999
Q ss_pred ccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEcC-----CCCHHHHH
Q 003887 481 TTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDI-----ARDMDMHV 555 (789)
Q Consensus 481 ~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~-----p~s~~~y~ 555 (789)
..++.|+..|...++.+..+||++++.+|..+++.|+.|.++|||||+++++|+|+|++++||++|. |.+...|+
T Consensus 450 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~i 529 (664)
T 1c4o_A 450 RMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 529 (664)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHH
T ss_pred HHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 99999999
Q ss_pred HHHhhcCCCCCCCeEEEEEEccccHHHHHHHHH
Q 003887 556 HRIGRTGRAGDKDGTAYTLVTQKEARFAGELVN 588 (789)
Q Consensus 556 QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~ 588 (789)
||+||+||.+ .|.|++|++..+..+...+.+
T Consensus 530 Qr~GRagR~~--~G~~i~~~~~~~~~~~~~i~~ 560 (664)
T 1c4o_A 530 QTIGRAARNA--RGEVWLYADRVSEAMQRAIEE 560 (664)
T ss_dssp HHHGGGTTST--TCEEEEECSSCCHHHHHHHHH
T ss_pred HHHCccCcCC--CCEEEEEEcCCCHHHHHHHHH
Confidence 9999999986 699999999887766555543
No 77
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.94 E-value=2.3e-26 Score=229.25 Aligned_cols=169 Identities=38% Similarity=0.618 Sum_probs=141.6
Q ss_pred cCccccceEEEEecCCCcchHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHh
Q 003887 437 GMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKF 516 (789)
Q Consensus 437 ~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F 516 (789)
.....+|.|.+..++ ...|...|.++|.......++||||+++..++.++..|...++.+..+||+|++.+|..+++.|
T Consensus 14 ~~~~~~i~q~~~~v~-~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f 92 (185)
T 2jgn_A 14 GSTSENITQKVVWVE-ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQF 92 (185)
T ss_dssp --CCTTEEEEEEECC-GGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHH
T ss_pred CCCCCCceEEEEEeC-cHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHH
Confidence 345678899888875 4678899998888765567999999999999999999999999999999999999999999999
Q ss_pred hcCCccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHHHHHHcCCC
Q 003887 517 KSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQN 596 (789)
Q Consensus 517 ~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~L~~~~~~ 596 (789)
++|.++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.| +.|.|++|+++.+...+..+.+.+....+.
T Consensus 93 ~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g-~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 171 (185)
T 2jgn_A 93 RSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVG-NLGLATSFFNERNINITKDLLDLLVEAKQE 171 (185)
T ss_dssp HHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTT-SCEEEEEEECGGGGGGHHHHHHHHHHTTCC
T ss_pred HcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCC-CCcEEEEEEchhhHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999999999999999999 679999999999999999999999999999
Q ss_pred ccHHHHHHHHh
Q 003887 597 VSMELMDLAMK 607 (789)
Q Consensus 597 vp~~l~~~a~~ 607 (789)
+|.+|.+++..
T Consensus 172 ~~~~l~~~a~~ 182 (185)
T 2jgn_A 172 VPSWLENMAYE 182 (185)
T ss_dssp CCHHHHHHHC-
T ss_pred CCHHHHHHHHH
Confidence 99999998863
No 78
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.93 E-value=1.8e-25 Score=264.31 Aligned_cols=175 Identities=20% Similarity=0.298 Sum_probs=135.4
Q ss_pred CCceEEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEecCCCcchHHHHHHhcCCCC-CCCcEEEEeccc
Q 003887 402 PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKK 480 (789)
Q Consensus 402 ~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~ 480 (789)
..+|+++||||+++..... ........+.......+. +. +.....+...|+..|.... ...++||||+++
T Consensus 385 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~p~----i~-v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 455 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH----TDEMVEQIIRPTGLLDPL----ID-VRPIEGQIDDLIGEIQARIERNERVLVTTLTK 455 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH----CSSCEEECCCTTCCCCCE----EE-EECSTTHHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred cCCCEEEEecCCChhHHHh----hhCeeeeeecccCCCCCe----EE-EecccchHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 4689999999997653221 122222222111111111 11 1223345566656555443 456999999999
Q ss_pred ccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhccCCCCCccEEEEEcC-----CCCHHHHH
Q 003887 481 TTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDI-----ARDMDMHV 555 (789)
Q Consensus 481 ~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~-----p~s~~~y~ 555 (789)
..++.|+..|...++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||++|. |.+...|+
T Consensus 456 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~i 535 (661)
T 2d7d_A 456 KMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 535 (661)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 99999999
Q ss_pred HHHhhcCCCCCCCeEEEEEEccccHHHHHHHH
Q 003887 556 HRIGRTGRAGDKDGTAYTLVTQKEARFAGELV 587 (789)
Q Consensus 556 QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~ 587 (789)
||+||+||. ..|.|++|+++.+..+...+.
T Consensus 536 Qr~GRagR~--~~G~~i~~~~~~~~~~~~~i~ 565 (661)
T 2d7d_A 536 QTIGRAARN--AEGRVIMYADKITKSMEIAIN 565 (661)
T ss_dssp HHHHTTTTS--TTCEEEEECSSCCHHHHHHHH
T ss_pred HHhCcccCC--CCCEEEEEEeCCCHHHHHHHH
Confidence 999999998 479999999998776655443
No 79
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.92 E-value=2.4e-24 Score=210.14 Aligned_cols=150 Identities=33% Similarity=0.613 Sum_probs=136.8
Q ss_pred CccccceEEEEecCCCcchHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhh
Q 003887 438 MANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFK 517 (789)
Q Consensus 438 ~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~ 517 (789)
....++.|.+..+. ...|...|..+|... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|+
T Consensus 5 ~~~~~i~~~~~~~~-~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~ 82 (163)
T 2hjv_A 5 LTTRNIEHAVIQVR-EENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFK 82 (163)
T ss_dssp -CCCCEEEEEEECC-GGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred cCcccceEEEEECC-hHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 34566888888775 567888888887653 4579999999999999999999999999999999999999999999999
Q ss_pred cCCccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHHHH
Q 003887 518 SGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSL 590 (789)
Q Consensus 518 ~G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~L 590 (789)
+|.++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.| +.|.|++|+++.+..++..+.+.+
T Consensus 83 ~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g-~~g~~~~~~~~~~~~~~~~i~~~~ 154 (163)
T 2hjv_A 83 RGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAG-NKGKAISFVTAFEKRFLADIEEYI 154 (163)
T ss_dssp TTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTT-CCEEEEEEECGGGHHHHHHHHHHH
T ss_pred cCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCC-CCceEEEEecHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 679999999999999888887766
No 80
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.92 E-value=1.5e-24 Score=214.00 Aligned_cols=154 Identities=29% Similarity=0.480 Sum_probs=136.4
Q ss_pred ccccceEEEEecCCCcchHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhc
Q 003887 439 ANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKS 518 (789)
Q Consensus 439 ~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~ 518 (789)
....|.|.+..++....|...|..++... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 35678899988877666999999888764 56799999999999999999999999999999999999999999999999
Q ss_pred CCccEEEeehhhhccCCCCCccEEEEEcCC------CCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHHHHHH
Q 003887 519 GVYHVLIATDVAARGLDIKSIKSVVNFDIA------RDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIA 592 (789)
Q Consensus 519 G~~~VLVaT~v~~~GlDI~~v~~VI~~d~p------~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~L~~ 592 (789)
|.++|||||+++++|+|+|++++||+||+| .++..|+||+||+||.| +.|.|++|+++.+...+..+.+.+..
T Consensus 83 g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~i~~~~~~ 161 (175)
T 2rb4_A 83 GKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFG-KKGLAFNMIEVDELPSLMKIQDHFNS 161 (175)
T ss_dssp TSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC-----CCEEEEEEECGGGHHHHHHHHHHHTC
T ss_pred CCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCC-CCceEEEEEccchHHHHHHHHHHhcC
Confidence 999999999999999999999999999999 89999999999999999 67999999999998888888777644
Q ss_pred cC
Q 003887 593 AG 594 (789)
Q Consensus 593 ~~ 594 (789)
.-
T Consensus 162 ~~ 163 (175)
T 2rb4_A 162 SI 163 (175)
T ss_dssp CC
T ss_pred cc
Confidence 33
No 81
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.91 E-value=2.2e-24 Score=212.41 Aligned_cols=158 Identities=26% Similarity=0.426 Sum_probs=138.3
Q ss_pred ccceEEEEecCCCcchHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCC
Q 003887 441 EDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGV 520 (789)
Q Consensus 441 ~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~ 520 (789)
..+.|.+..+. ...|...|..++... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|.
T Consensus 4 ~~i~q~~~~~~-~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 4 HGLQQYYVKLK-DNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp -CCEEEEEECC-GGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CCeEEEEEECC-hHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 46778877775 467888888888754 4579999999999999999999999999999999999999999999999999
Q ss_pred ccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccc-cHHHHHHHHHHHHHcCCCccH
Q 003887 521 YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK-EARFAGELVNSLIAAGQNVSM 599 (789)
Q Consensus 521 ~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~-d~~~~~~l~~~L~~~~~~vp~ 599 (789)
++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.| +.|.+++|+++. +...+..+.+.+......+|.
T Consensus 82 ~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g-~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (172)
T 1t5i_A 82 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFG-TKGLAITFVSDENDAKILNDVQDRFEVNISELPD 160 (172)
T ss_dssp CSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGG-CCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC-
T ss_pred CcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCC-CCcEEEEEEcChhHHHHHHHHHHHHhcchhhCCh
Confidence 999999999999999999999999999999999999999999999 679999999876 567777777777665566666
Q ss_pred HH
Q 003887 600 EL 601 (789)
Q Consensus 600 ~l 601 (789)
++
T Consensus 161 ~~ 162 (172)
T 1t5i_A 161 EI 162 (172)
T ss_dssp --
T ss_pred hh
Confidence 53
No 82
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.91 E-value=1.4e-24 Score=212.13 Aligned_cols=157 Identities=27% Similarity=0.478 Sum_probs=136.4
Q ss_pred ccceEEEEecCCCcchHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCC
Q 003887 441 EDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGV 520 (789)
Q Consensus 441 ~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~ 520 (789)
..+.|.+..+.....|...|.+++... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|.
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 80 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS 80 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 357788888866555888888888754 5679999999999999999999999999999999999999999999999999
Q ss_pred ccEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHHHHHHcCCCccH
Q 003887 521 YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSM 599 (789)
Q Consensus 521 ~~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~L~~~~~~vp~ 599 (789)
.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.| +.|.|++|+++.+...+..+.+.+....+.+|.
T Consensus 81 ~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (165)
T 1fuk_A 81 SRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFG-RKGVAINFVTNEDVGAMRELEKFYSTQIEELPS 158 (165)
T ss_dssp CSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC------CEEEEEEETTTHHHHHHHHHHSSCCCEECCS
T ss_pred CEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCC-CCceEEEEEcchHHHHHHHHHHHHccCccccCc
Confidence 999999999999999999999999999999999999999999999 679999999999999888887777665555554
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.89 E-value=5.4e-23 Score=209.43 Aligned_cols=139 Identities=36% Similarity=0.499 Sum_probs=127.2
Q ss_pred CCcchHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhh
Q 003887 452 SDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAA 531 (789)
Q Consensus 452 ~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~ 531 (789)
....|+..|..++... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|.++|||||++++
T Consensus 14 ~~~~k~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~ 92 (212)
T 3eaq_A 14 PVRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAA 92 (212)
T ss_dssp CTTSHHHHHHHHHHHH-CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTT
T ss_pred CHHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhh
Confidence 4467888888887643 467999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHHHHHH
Q 003887 532 RGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIA 592 (789)
Q Consensus 532 ~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~L~~ 592 (789)
+|+|||++++||+||+|+++..|+||+||+||.| +.|.|++|+++.+...+..+.+.+..
T Consensus 93 ~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g-~~g~~~~l~~~~~~~~~~~i~~~~~~ 152 (212)
T 3eaq_A 93 RGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAG-RGGRVVLLYGPRERRDVEALERAVGR 152 (212)
T ss_dssp CSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC---BEEEEEECGGGHHHHHHHHHHHSS
T ss_pred cCCCCccCcEEEECCCCcCHHHHHHHhcccCCCC-CCCeEEEEEchhHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999 67999999999999888888776644
No 84
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.89 E-value=4.3e-23 Score=209.42 Aligned_cols=166 Identities=23% Similarity=0.205 Sum_probs=123.4
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHH-HHHHHHHHh
Q 003887 244 GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQ-IYLETKKFA 322 (789)
Q Consensus 244 g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Q-i~~~~~k~~ 322 (789)
....|+|+|.++++.++.+++++++++||+|||++|+++++..+..... ...++++|||+|+++|+.| |.+.+.++.
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH--TTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc--ccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 3458999999999999999999999999999999999999887654221 1235679999999999999 888888887
Q ss_pred hhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhcc------ccccceeEEEEcccchhccCCChHHHHHH
Q 003887 323 KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKA------LTMSRVTYLVLDEADRMFDLGFEPQIRSI 396 (789)
Q Consensus 323 ~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~------~~l~~i~~lVlDEah~m~~~~f~~~i~~i 396 (789)
.. ++++..++|+.........+..+++|+|+||+.|...+.... ..+..+++|||||||++...++...+...
T Consensus 108 ~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~ 186 (216)
T 3b6e_A 108 KK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRH 186 (216)
T ss_dssp TT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHH
T ss_pred cc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHH
Confidence 64 678888888776554444555579999999999999887643 56788999999999999887666665433
Q ss_pred HhhcC--------------CCceEEEEecc
Q 003887 397 VGQIR--------------PDRQTLLFSAT 412 (789)
Q Consensus 397 l~~~~--------------~~~q~ll~SAT 412 (789)
+.... +..++|+||||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 187 YLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHhcccccccccccCCCCcceEEEeecC
Confidence 22111 67899999998
No 85
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.87 E-value=2.8e-22 Score=214.21 Aligned_cols=147 Identities=34% Similarity=0.474 Sum_probs=129.0
Q ss_pred ceEEEEecCCCcchHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcc
Q 003887 443 ITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYH 522 (789)
Q Consensus 443 i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~ 522 (789)
+.+.+..+. ...|+..|..++... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|.++
T Consensus 3 v~~~~i~~~-~~~K~~~L~~ll~~~-~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~ 80 (300)
T 3i32_A 3 YEEEAVPAP-VRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR 80 (300)
T ss_dssp SEEEEEECC-SSSHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC
T ss_pred eEEEEEECC-HHHHHHHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce
Confidence 455555554 467888888887654 378999999999999999999999999999999999999999999999999999
Q ss_pred EEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHHHHHH
Q 003887 523 VLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIA 592 (789)
Q Consensus 523 VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~L~~ 592 (789)
|||||+++++|+|||++++||+||+|+++..|+||+||+||.| +.|.|++|+++.+..++..+.+.+..
T Consensus 81 vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g-~~G~~i~l~~~~e~~~~~~ie~~~~~ 149 (300)
T 3i32_A 81 VLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAG-RGGRVVLLYGPRERRDVEALERAVGR 149 (300)
T ss_dssp EEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC------CEEEEEECSSTHHHHHHHHHHHTC
T ss_pred EEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCC-CCceEEEEeChHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999 67999999999999888888777644
No 86
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.79 E-value=5.6e-24 Score=208.98 Aligned_cols=148 Identities=34% Similarity=0.502 Sum_probs=133.0
Q ss_pred cceEEEEecCCCcchHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCc
Q 003887 442 DITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVY 521 (789)
Q Consensus 442 ~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~ 521 (789)
++.|.+..++....|...|..++... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|.+
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQP-EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 81 (170)
Confidence 45666666655467888888877653 45799999999999999999999999999999999999999999999999999
Q ss_pred cEEEeehhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHHHHH
Q 003887 522 HVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLI 591 (789)
Q Consensus 522 ~VLVaT~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~L~ 591 (789)
+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.| +.|.+++|+++.+...+..+.+.+.
T Consensus 82 ~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g-~~g~~~~~~~~~~~~~~~~~~~~~~ 150 (170)
T 2yjt_D 82 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAG-RKGTAISLVEAHDHLLLGKVGRYIE 150 (170)
Confidence 99999999999999999999999999999999999999999999 6799999999998888877776553
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.87 E-value=1.6e-21 Score=225.90 Aligned_cols=299 Identities=18% Similarity=0.228 Sum_probs=168.1
Q ss_pred cCCCCCcHHHHHHHHH----HHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHH
Q 003887 243 QGYEKPTSIQCQALPI----ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLET 318 (789)
Q Consensus 243 ~g~~~ptpiQ~~ai~~----il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~ 318 (789)
.|| .|+|+|.+++.. +..++++++.+|||+|||++|++|++.+ ++++||++||++|+.|+.+++
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-----------~~~~~~~~~t~~l~~q~~~~~ 71 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-----------KKKVLIFTRTHSQLDSIYKNA 71 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-----------TCEEEEEESCHHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-----------CCcEEEEcCCHHHHHHHHHHH
Confidence 356 799999998654 5688999999999999999999998764 467999999999999999888
Q ss_pred HHHhhhcCcEEEEEEcCCCh--------------------------------HHHH---------------HHHhcCCcE
Q 003887 319 KKFAKSHGIRVSAVYGGMSK--------------------------------LDQF---------------KELKAGCEI 351 (789)
Q Consensus 319 ~k~~~~~~i~v~~~~gg~~~--------------------------------~~~~---------------~~l~~~~dI 351 (789)
.++ ++++..+.|.... .+.+ ++....++|
T Consensus 72 ~~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adi 147 (540)
T 2vl7_A 72 KLL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDV 147 (540)
T ss_dssp GGG----TCCEEEC---------------------------------------------------------CTTGGGCSE
T ss_pred Hhc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCE
Confidence 774 4555544432210 0000 111245899
Q ss_pred EEeCHHHHHHHHhhccc-------cccceeEEEEcccchhccCC-----------ChH----------------------
Q 003887 352 VIATPGRLIDMLKMKAL-------TMSRVTYLVLDEADRMFDLG-----------FEP---------------------- 391 (789)
Q Consensus 352 iV~Tp~~L~~~l~~~~~-------~l~~i~~lVlDEah~m~~~~-----------f~~---------------------- 391 (789)
||+||..|++......+ .+....+|||||||+|.+.. +..
T Consensus 148 VV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~l~~~ 227 (540)
T 2vl7_A 148 IAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKKVKDY 227 (540)
T ss_dssp EEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred EEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 99999999875544332 24678899999999983310 000
Q ss_pred --------------------------------HHHHHHhh-----------------------------------cCC-C
Q 003887 392 --------------------------------QIRSIVGQ-----------------------------------IRP-D 403 (789)
Q Consensus 392 --------------------------------~i~~il~~-----------------------------------~~~-~ 403 (789)
.+..++.. +.| .
T Consensus 228 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~P~~ 307 (540)
T 2vl7_A 228 INLLIDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVKVPSD 307 (540)
T ss_dssp HHHHHHHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEEECSC
T ss_pred HHHHHHHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEEehHH
Confidence 00000000 000 0
Q ss_pred --------ce----EEEEeccCcHHHHHHHHHHhCCCeEEeeccccCccccceEEEEe--cCCCcchH----HHHHHhcC
Q 003887 404 --------RQ----TLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHV--IPSDAEKL----PWLLEKLP 465 (789)
Q Consensus 404 --------~q----~ll~SATl~~~v~~l~~~~l~~p~~i~i~~~~~~~~~i~q~~~~--~~~~~~k~----~~L~~~L~ 465 (789)
+. +|++|||+.+.+ .+...| ...+... . ...+.+.. ++...... ..+.+.|.
T Consensus 308 ~~~~l~~~~~~~~~~IltSATL~p~~-~~~~~f-----~~~~~~~-~---g~~~~~~~~~l~s~f~~r~~~~~~~~~~l~ 377 (540)
T 2vl7_A 308 VNQLIEDALNVKTFKVLMSGTLPESL-TLTNSY-----KIVVNES-Y---GRGEYYYCPNVTSELRKRNSNIPIYSILLK 377 (540)
T ss_dssp HHHHHHHHTCCSSCEEEEESSCCTTC-CCTTEE-----EEECCCC-----CCCEEEECTTCCCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccCCeEEEcccCCCCc-ccchhc-----CCchhhe-e---cCCcceeccccCCCcccccCHHHHHHHHHH
Confidence 11 366666665410 000000 0000000 0 00111111 11211111 22333332
Q ss_pred CC--CCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEE--eehhhhccCCCCC---
Q 003887 466 GM--IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLI--ATDVAARGLDIKS--- 538 (789)
Q Consensus 466 ~~--~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLV--aT~v~~~GlDI~~--- 538 (789)
.. ...+++|||++++..++.++..|.. +. ..+++.. .+|..+++.|+.+. .||+ +|..+.+|||+++
T Consensus 378 ~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~ 451 (540)
T 2vl7_A 378 RIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKEN 451 (540)
T ss_dssp HHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------
T ss_pred HHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcc
Confidence 21 1357899999999999999988864 33 4556654 46889999999864 6777 8899999999998
Q ss_pred -ccEEEEEcCCCC----H--------------------------HHHHHHHhhcCCCCCCCeEEEE
Q 003887 539 -IKSVVNFDIARD----M--------------------------DMHVHRIGRTGRAGDKDGTAYT 573 (789)
Q Consensus 539 -v~~VI~~d~p~s----~--------------------------~~y~QriGR~gR~G~~~G~~i~ 573 (789)
+++||++++|.. + ....|.+||+-|.-+..|..++
T Consensus 452 ~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~l 517 (540)
T 2vl7_A 452 LFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYL 517 (540)
T ss_dssp CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEE
T ss_pred cccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEE
Confidence 899999998842 1 1235999999998644565443
No 88
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.84 E-value=3.5e-21 Score=204.63 Aligned_cols=156 Identities=19% Similarity=0.116 Sum_probs=127.8
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003887 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~ 325 (789)
.+|+|+|.++++.++.+++.|++++||+|||+++++++..++.. ...++|||+||++|+.||.+++.++....
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-------~~~~~lil~Pt~~L~~q~~~~l~~~~~~~ 184 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-------YEGKILIIVPTTALTTQMADDFVDYRLFS 184 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH-------CSSEEEEECSSHHHHHHHHHHHHHHTSCC
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc-------CCCeEEEEECCHHHHHHHHHHHHHhcccc
Confidence 37999999999999988899999999999999998887776532 13479999999999999999999997655
Q ss_pred CcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcCCCce
Q 003887 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405 (789)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q 405 (789)
...+..++++..... .....++|+|+||+.|... ....+..+++|||||||++.. ..+..++..+...++
T Consensus 185 ~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~ 254 (282)
T 1rif_A 185 HAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMF 254 (282)
T ss_dssp GGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCE
T ss_pred cceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCe
Confidence 677888888876542 2224589999999987543 234577899999999999874 478888888888999
Q ss_pred EEEEeccCcHHHH
Q 003887 406 TLLFSATMPRKVE 418 (789)
Q Consensus 406 ~ll~SATl~~~v~ 418 (789)
+++||||+++...
T Consensus 255 ~l~lSATp~~~~~ 267 (282)
T 1rif_A 255 KFGLSGSLRDGKA 267 (282)
T ss_dssp EEEECSSCCTTST
T ss_pred EEEEeCCCCCcch
Confidence 9999999986643
No 89
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.84 E-value=6.7e-21 Score=197.04 Aligned_cols=180 Identities=18% Similarity=0.201 Sum_probs=131.0
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHH
Q 003887 236 LMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIY 315 (789)
Q Consensus 236 l~~~l~~~g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~ 315 (789)
+.+.+.......++++|.++++.+..+++++++|+||||||+++.++++..+..... .....+|+++|+++|+.|+.
T Consensus 50 ~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---~~~~~~l~~~p~~~la~q~~ 126 (235)
T 3llm_A 50 LQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR---AAECNIVVTQPRRISAVSVA 126 (235)
T ss_dssp HHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---GGGCEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---CCceEEEEeccchHHHHHHH
Confidence 333333344456799999999999999999999999999999999998887765422 22458999999999999998
Q ss_pred HHHHHHhhh-cCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchh-ccCCChH-H
Q 003887 316 LETKKFAKS-HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM-FDLGFEP-Q 392 (789)
Q Consensus 316 ~~~~k~~~~-~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m-~~~~f~~-~ 392 (789)
+.+...... .+..+.......... ...+++|+||||++|++++.. .+.++++|||||||++ ++++|.. .
T Consensus 127 ~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~ 198 (235)
T 3llm_A 127 ERVAFERGEEPGKSCGYSVRFESIL-----PRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVV 198 (235)
T ss_dssp HHHHHTTTCCTTSSEEEEETTEEEC-----CCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHH
T ss_pred HHHHHHhccccCceEEEeechhhcc-----CCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHH
Confidence 887765432 233333222111100 013488999999999999865 4889999999999986 7777764 4
Q ss_pred HHHHHhhcCCCceEEEEeccCcHHHHHHHHHHhCCCe
Q 003887 393 IRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPV 429 (789)
Q Consensus 393 i~~il~~~~~~~q~ll~SATl~~~v~~l~~~~l~~p~ 429 (789)
+..++.. .++.|+++||||++... +.+.+...|+
T Consensus 199 l~~i~~~-~~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 199 LRDVVQA-YPEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp HHHHHHH-CTTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred HHHHHhh-CCCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 4455544 46899999999999775 5555555554
No 90
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.84 E-value=2.1e-19 Score=208.83 Aligned_cols=281 Identities=17% Similarity=0.131 Sum_probs=182.3
Q ss_pred CCcHHHHHHHHH----HHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHh
Q 003887 247 KPTSIQCQALPI----ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (789)
Q Consensus 247 ~ptpiQ~~ai~~----il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~ 322 (789)
.|+|+|.+++.. +..++++++.+|||+|||++|++|++.. ++++||++||++|+.|+.+++.++.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~-----------~~~v~i~~pt~~l~~q~~~~~~~l~ 71 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV-----------KPKVLFVVRTHNEFYPIYRDLTKIR 71 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH-----------CSEEEEEESSGGGHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC-----------CCeEEEEcCCHHHHHHHHHHHHHHh
Confidence 689999998764 4578999999999999999999999872 5789999999999999999999887
Q ss_pred hhcCcEEEEEEcCCC---------------------------------hHHHH------------------HHHhcCCcE
Q 003887 323 KSHGIRVSAVYGGMS---------------------------------KLDQF------------------KELKAGCEI 351 (789)
Q Consensus 323 ~~~~i~v~~~~gg~~---------------------------------~~~~~------------------~~l~~~~dI 351 (789)
...+++++++.|... ....+ +.....++|
T Consensus 72 ~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adI 151 (551)
T 3crv_A 72 EKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADV 151 (551)
T ss_dssp CSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSE
T ss_pred hhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCE
Confidence 766788888776321 11222 233456899
Q ss_pred EEeCHHHHHHHHhhccccc-cceeEEEEcccchhccCC------------------------------------------
Q 003887 352 VIATPGRLIDMLKMKALTM-SRVTYLVLDEADRMFDLG------------------------------------------ 388 (789)
Q Consensus 352 iV~Tp~~L~~~l~~~~~~l-~~i~~lVlDEah~m~~~~------------------------------------------ 388 (789)
||+||..|++...+..+.+ ....+|||||||+|.+ .
T Consensus 152 VV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~ 230 (551)
T 3crv_A 152 IALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLP 230 (551)
T ss_dssp EEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCS
T ss_pred EEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999998765443333 4678999999998855 1
Q ss_pred -------------ChHHHHHH----------------------------Hh----------------------------h
Q 003887 389 -------------FEPQIRSI----------------------------VG----------------------------Q 399 (789)
Q Consensus 389 -------------f~~~i~~i----------------------------l~----------------------------~ 399 (789)
+...+..+ +. .
T Consensus 231 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~ 310 (551)
T 3crv_A 231 DEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNL 310 (551)
T ss_dssp CSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGG
T ss_pred cccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHH
Confidence 00000000 00 0
Q ss_pred cCCC-ceEEEEeccCcHHHHHHHHHHhCCC--eEE--eeccccCccccceEEEEecCCC----cc-----hHHHHHHhcC
Q 003887 400 IRPD-RQTLLFSATMPRKVEKLAREILSDP--VRV--TVGEVGMANEDITQVVHVIPSD----AE-----KLPWLLEKLP 465 (789)
Q Consensus 400 ~~~~-~q~ll~SATl~~~v~~l~~~~l~~p--~~i--~i~~~~~~~~~i~q~~~~~~~~----~~-----k~~~L~~~L~ 465 (789)
+... +.+|++|||+.+ ...+.. .++-+ ... .....+... ..+...+++.. .. -...+.+.|.
T Consensus 311 ~~~~~~svIltSaTL~~-~~~~~~-~lGl~~~~~~~~~~~~~~spf--~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~ 386 (551)
T 3crv_A 311 LNDNELSIILMSGTLPP-REYMEK-VWGIKRNMLYLDVEREIQKRV--SGSYECYIGVDVTSKYDMRSDNMWKRYADYLL 386 (551)
T ss_dssp GGCTTCEEEEEESSCCC-HHHHHH-TSCCCSCEEEEEHHHHTTSCC--SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHH
T ss_pred HhccCceEEEEeeCCCc-HHHHHH-HhCCCCccccccceeecCCcC--CCceEEEEeCCCCCccccCCHHHHHHHHHHHH
Confidence 1122 688999999976 333333 33322 210 011111111 12222222211 11 1233444333
Q ss_pred CCC--CCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEee--hhhhccCCCC---C
Q 003887 466 GMI--DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT--DVAARGLDIK---S 538 (789)
Q Consensus 466 ~~~--~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT--~v~~~GlDI~---~ 538 (789)
... ..+++|||++++..++.+++. .+..+..-..+++ +..+++.|+...-.||++| ..+.+|||++ +
T Consensus 387 ~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g 460 (551)
T 3crv_A 387 KIYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDR 460 (551)
T ss_dssp HHHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTE
T ss_pred HHHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCC
Confidence 322 357999999999999998873 3444443333455 4557788854444799998 6889999999 3
Q ss_pred --ccEEEEEcCCC
Q 003887 539 --IKSVVNFDIAR 549 (789)
Q Consensus 539 --v~~VI~~d~p~ 549 (789)
++.||+..+|.
T Consensus 461 ~~l~~viI~~lPf 473 (551)
T 3crv_A 461 SLISDVVIVGIPY 473 (551)
T ss_dssp ESEEEEEEESCCC
T ss_pred cceeEEEEEcCCC
Confidence 88999877664
No 91
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.76 E-value=2.2e-17 Score=193.58 Aligned_cols=313 Identities=16% Similarity=0.160 Sum_probs=190.6
Q ss_pred CCcHHHHHHHH----HHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHh
Q 003887 247 KPTSIQCQALP----IILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (789)
Q Consensus 247 ~ptpiQ~~ai~----~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~ 322 (789)
+|+|.|.+.+. ++..++++++.||||+|||++|++|++.++.. .++++||++||++|+.|+.+++.++.
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~-------~~~kvli~t~T~~l~~Qi~~el~~l~ 75 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE-------RKLKVLYLVRTNSQEEQVIKELRSLS 75 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH-------HTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh-------cCCeEEEECCCHHHHHHHHHHHHHHh
Confidence 58999999985 45688999999999999999999999998743 25789999999999999999999998
Q ss_pred hhcCcEEEEEEcCCChHH------------------HHHH----------------------------------------
Q 003887 323 KSHGIRVSAVYGGMSKLD------------------QFKE---------------------------------------- 344 (789)
Q Consensus 323 ~~~~i~v~~~~gg~~~~~------------------~~~~---------------------------------------- 344 (789)
....++++.++|+.+..- .+..
T Consensus 76 ~~~~~~~~~l~gr~~lC~~~~~~~~~~~~~~~~~~~~C~~l~~~~~~~~~~~C~~~~~~~~~gd~~~~l~~~~~die~l~ 155 (620)
T 4a15_A 76 STMKIRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPTAEEFY 155 (620)
T ss_dssp HHSCCCEEECCCHHHHCSSHHHHCCCSSCCHHHHHHHHHHHHHHHHTTCTTSSTTCSGGGGCHHHHHHHHHHCCCHHHHH
T ss_pred hccCeEEEEEECCCcccccChhhhhcccchhhhHHHHHHHHHhccccCCCCCCCcccccCcccchhHHhccCCCCHHHHH
Confidence 776777777665432000 0010
Q ss_pred ----------------HhcCCcEEEeCHHHHHHHHhhcc----c-cccceeEEEEcccchhcc-----------------
Q 003887 345 ----------------LKAGCEIVIATPGRLIDMLKMKA----L-TMSRVTYLVLDEADRMFD----------------- 386 (789)
Q Consensus 345 ----------------l~~~~dIiV~Tp~~L~~~l~~~~----~-~l~~i~~lVlDEah~m~~----------------- 386 (789)
....+||||+.+..|++...+.. . ....-.+|||||||++.+
T Consensus 156 ~~~~~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~a~~~~S~~ls~~~l~~ 235 (620)
T 4a15_A 156 DYGERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESLNR 235 (620)
T ss_dssp HHHHHTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHHHHHHHCEEEEHHHHHH
T ss_pred HHhhhcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHHHHHhhcceeCHHHHHH
Confidence 01238999999988766543321 1 123557999999998732
Q ss_pred ---------CCC------h----H---------------------------------------HHHHH-------Hh---
Q 003887 387 ---------LGF------E----P---------------------------------------QIRSI-------VG--- 398 (789)
Q Consensus 387 ---------~~f------~----~---------------------------------------~i~~i-------l~--- 398 (789)
..+ . . .+..+ ..
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 315 (620)
T 4a15_A 236 ADREAQAYGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDVRIRFQEFMEYMRIMNKRSEREIRSLLNYLYLFGEYVE 315 (620)
T ss_dssp HHHHHHHTTCCEEETTEEHHHHHHHHHHHHHHHHHHHCSSSCEEECTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHH
Confidence 000 0 0 00000 00
Q ss_pred ----------------------h---cC------------------------------CCceEEEEeccCcHHHHHHHHH
Q 003887 399 ----------------------Q---IR------------------------------PDRQTLLFSATMPRKVEKLARE 423 (789)
Q Consensus 399 ----------------------~---~~------------------------------~~~q~ll~SATl~~~v~~l~~~ 423 (789)
. .. ..+.+|++|||+.+ ...+...
T Consensus 316 ~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~l~~~~~~~~il~SaTL~p-~~~~~~~ 394 (620)
T 4a15_A 316 NEKEKVGKVPFSYCSSVASRIIAFSDQDEEKYAAILSPEDGGYMQAACLDPSGILEVLKESKTIHMSGTLDP-FDFYSDI 394 (620)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHHHTSCTTTEEEEEECGGGCEEEEEECCTHHHHGGGGGSEEEEEESSCCS-HHHHHHH
T ss_pred hhccccccccccHHHHHHHHHHHHhhcCCCCEEEEEEeCCCcEEEEEECCHHHHHHHHhCCeEEEEccCCCc-HHHHHHH
Confidence 0 00 01245899999976 3444443
Q ss_pred HhCCCeEEeeccccCccccceEEEEecCCC--------cchHHHHHHhcCCCC--CCCcEEEEecccccHHHHHHHHHHc
Q 003887 424 ILSDPVRVTVGEVGMANEDITQVVHVIPSD--------AEKLPWLLEKLPGMI--DDGDVLVFASKKTTVDEIESQLAQK 493 (789)
Q Consensus 424 ~l~~p~~i~i~~~~~~~~~i~q~~~~~~~~--------~~k~~~L~~~L~~~~--~~~kvLVF~~s~~~a~~l~~~L~~~ 493 (789)
+.-++..+.+... ....+ +.+.++..- ..-...+.+.|.... ..+++|||++++..++.+++.|.
T Consensus 395 lGl~~~~~~~~sp-f~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~-- 469 (620)
T 4a15_A 395 TGFEIPFKKIGEI-FPPEN--RYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVS-- 469 (620)
T ss_dssp HCCCCCEEECCCC-SCGGG--EEEEEECCC-------CHHHHHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCC--
T ss_pred hCCCceeeecCCC-CCHHH--eEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHH--
Confidence 3222222222211 11111 222222111 111223333332222 36789999999999999998886
Q ss_pred CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeeh--hhhccCCCCC--ccEEEEEcCCCC-------------------
Q 003887 494 GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD--VAARGLDIKS--IKSVVNFDIARD------------------- 550 (789)
Q Consensus 494 g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~--v~~~GlDI~~--v~~VI~~d~p~s------------------- 550 (789)
.+... ..-+++..++..+++.|+ +.-.||++|. .+.+|||+++ ++.||+..+|.-
T Consensus 470 ~~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~ 547 (620)
T 4a15_A 470 FEHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGK 547 (620)
T ss_dssp SCCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSC
T ss_pred hcchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCC
Confidence 22222 444556678999999999 8888999985 8899999998 778999887742
Q ss_pred HHH--H--------HHHHhhcCCCCCCCeEEEEE
Q 003887 551 MDM--H--------VHRIGRTGRAGDKDGTAYTL 574 (789)
Q Consensus 551 ~~~--y--------~QriGR~gR~G~~~G~~i~l 574 (789)
.-. | .|.+||+-|.-+..|..+++
T Consensus 548 ~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~ll 581 (620)
T 4a15_A 548 GWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVIL 581 (620)
T ss_dssp HHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEE
T ss_pred CchHHhHHHHHHHHHHHhCccccCCCceEEEEEE
Confidence 111 2 59999999987555655544
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.75 E-value=8e-18 Score=174.15 Aligned_cols=139 Identities=22% Similarity=0.149 Sum_probs=110.0
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003887 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~ 325 (789)
..|+++|.+++..++.++++|++++||+|||++++.++... +.++||++|+++|+.||.+++.++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----------~~~~liv~P~~~L~~q~~~~~~~~---- 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-----------CSCEEEEESSHHHHHHHHHHHGGG----
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHHHhC----
Confidence 57999999999999999999999999999999987766542 355899999999999999998884
Q ss_pred CcE-EEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcCCCc
Q 003887 326 GIR-VSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR 404 (789)
Q Consensus 326 ~i~-v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~ 404 (789)
++. +..+.|+... ..+|+|+||+.|...+.. ....+++|||||||++.+..+. .++..++ ..
T Consensus 157 ~~~~v~~~~g~~~~---------~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~~~----~i~~~~~-~~ 219 (237)
T 2fz4_A 157 GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYV----QIAQMSI-AP 219 (237)
T ss_dssp CGGGEEEESSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTTHH----HHHHTCC-CS
T ss_pred CCCeEEEEeCCCCC---------cCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChHHH----HHHHhcc-CC
Confidence 677 7777766542 479999999998776542 1346899999999998776543 3444443 67
Q ss_pred eEEEEeccCcHH
Q 003887 405 QTLLFSATMPRK 416 (789)
Q Consensus 405 q~ll~SATl~~~ 416 (789)
++|+||||+++.
T Consensus 220 ~~l~LSATp~r~ 231 (237)
T 2fz4_A 220 FRLGLTATFERE 231 (237)
T ss_dssp EEEEEEESCC--
T ss_pred EEEEEecCCCCC
Confidence 899999998754
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.73 E-value=5.6e-18 Score=178.61 Aligned_cols=127 Identities=15% Similarity=0.270 Sum_probs=101.2
Q ss_pred CCcchHHHHHHhcCCCC-CCCcEEEEecccccHHHHHHHHHHc-CCceeeccCCCCHHHHHHHHHHhhcC-Ccc-EEEee
Q 003887 452 SDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQK-GFKAAALHGDKDQASRMEILQKFKSG-VYH-VLIAT 527 (789)
Q Consensus 452 ~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~-g~~v~~lhg~~~~~eR~~~l~~F~~G-~~~-VLVaT 527 (789)
....|+..|.++|.... ...++||||+++..++.|...|... ++.+..+||++++.+|..+++.|+++ .++ +||+|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 45678888888887653 4569999999999999999999885 99999999999999999999999998 677 78999
Q ss_pred hhhhccCCCCCccEEEEEcCCCCHHHHHHHHhhcCCCCCC-CeEEEEEEccc
Q 003887 528 DVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDK-DGTAYTLVTQK 578 (789)
Q Consensus 528 ~v~~~GlDI~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~-~G~~i~l~~~~ 578 (789)
+++++|||++.+++||+||+|||+..|+||+||++|.|++ ...+|.|++..
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 9999999999999999999999999999999999999954 34567788765
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.78 E-value=8.4e-09 Score=120.71 Aligned_cols=146 Identities=21% Similarity=0.255 Sum_probs=93.5
Q ss_pred cHHHHHHHHHHHcCCCEEEEccCCChhh--HHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003887 249 TSIQCQALPIILSGRDIIGIAKTGSGKT--AAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (789)
Q Consensus 249 tpiQ~~ai~~il~grdvl~~a~TGsGKT--la~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~ 326 (789)
++.|+++++.++.++.+++.+++|+||| ++++++++..+.. ..+.++++++||..+|.++.+.+..+....+
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~------~~~~~vll~APTg~AA~~L~e~~~~~~~~l~ 224 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD------GERCRIRLAAPTGKAAARLTESLGKALRQLP 224 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS------SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh------cCCCeEEEEeCChhHHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999999999 5555665554311 2356799999999999999988887766544
Q ss_pred cEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcCCCceE
Q 003887 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 406 (789)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ 406 (789)
+..... ..... ....+ ..++-.+|+.. . +.........+++||||||+ |++ ...+..++..++...|+
T Consensus 225 l~~~~~-~~~~~--~~~Ti---h~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~~~~~l 292 (608)
T 1w36_D 225 LTDEQK-KRIPE--DASTL---HRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEAS-MID---LPMMSRLIDALPDHARV 292 (608)
T ss_dssp CCSCCC-CSCSC--CCBTT---TSCC-------------CTTSCCSCSEEEECSGG-GCB---HHHHHHHHHTCCTTCEE
T ss_pred CCHHHH-hccch--hhhhh---HhhhccCCCch-H-HHhccCCCCCCCEEEEechh-hCC---HHHHHHHHHhCCCCCEE
Confidence 321110 00000 00000 11222223221 1 11111222378999999999 554 56778889999989999
Q ss_pred EEEecc
Q 003887 407 LLFSAT 412 (789)
Q Consensus 407 ll~SAT 412 (789)
|++.-.
T Consensus 293 iLvGD~ 298 (608)
T 1w36_D 293 IFLGDR 298 (608)
T ss_dssp EEEECT
T ss_pred EEEcch
Confidence 998766
No 95
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.11 E-value=5.2e-06 Score=87.98 Aligned_cols=124 Identities=10% Similarity=0.106 Sum_probs=89.5
Q ss_pred CcchHHHHHHhcCCCCC-CCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhh
Q 003887 453 DAEKLPWLLEKLPGMID-DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAA 531 (789)
Q Consensus 453 ~~~k~~~L~~~L~~~~~-~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~ 531 (789)
.+.|+..|-.+|..+.. +.+||||++.....+.+..+|...++.+..+.|.....++. -.+..+.|.+.|...+
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECCCC
Confidence 46787777666655443 45999999999999999999999999999999986543221 1244556656576666
Q ss_pred ccCC-----CCCccEEEEEcCCCCHHHH-HHHHhhcCCCC---CCCeEEEEEEccccHH
Q 003887 532 RGLD-----IKSIKSVVNFDIARDMDMH-VHRIGRTGRAG---DKDGTAYTLVTQKEAR 581 (789)
Q Consensus 532 ~GlD-----I~~v~~VI~~d~p~s~~~y-~QriGR~gR~G---~~~G~~i~l~~~~d~~ 581 (789)
-|+| +..+++||.||..||+..- +|++-|++|.| .+.-.+|.|++.+-.+
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiE 240 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSID 240 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHH
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHH
Confidence 6665 7889999999999999886 99999999984 2456788888876544
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.03 E-value=3e-05 Score=90.92 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=56.3
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003887 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 245 ~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~ 321 (789)
+..+++.|.+|+..++...-+++.||+|+|||.+ +..++.++... .+.++|+++||...+.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~-~~~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT-SATIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHH-HHHHHHHHHTS------SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHH-HHHHHHHHHHc------CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 4578999999999999887889999999999986 45555665432 3567999999999999988777653
No 97
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.99 E-value=1.1e-05 Score=95.21 Aligned_cols=68 Identities=24% Similarity=0.296 Sum_probs=54.6
Q ss_pred CCCcHHHHHHHHHHHcCCC-EEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003887 246 EKPTSIQCQALPIILSGRD-IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~grd-vl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~ 321 (789)
..+.+-|.+|+..++..++ .||.||+|+|||.+ ++.++.+++.+ +.++|+++||...+.++.+.+...
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~t-i~~~I~~l~~~-------~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTT-VVEIILQAVKQ-------GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHH-HHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHH-HHHHHHHHHhC-------CCeEEEEcCchHHHHHHHHHHHhc
Confidence 3588999999999998775 57889999999987 55556666543 567999999999999988777543
No 98
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.95 E-value=0.00016 Score=84.96 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=54.9
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhh
Q 003887 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~ 323 (789)
..+++-|.+++. .....++|.|+.|||||.+ ++.-+.+++..... ...++|+|++|+..+.++.+.+.++..
T Consensus 8 ~~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~-l~~ri~~l~~~~~~---~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 8 DSLNDKQREAVA--APRSNLLVLAGAGSGKTRV-LVHRIAWLMSVENC---SPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TTCCHHHHHHHT--CCSSCEEEEECTTSCHHHH-HHHHHHHHHHTSCC---CGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred hcCCHHHHHHHh--CCCCCEEEEECCCCCHHHH-HHHHHHHHHHhCCC---ChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 578999999997 2356799999999999987 45555555543211 123599999999999999999888754
No 99
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.94 E-value=2.7e-05 Score=87.92 Aligned_cols=136 Identities=13% Similarity=0.163 Sum_probs=80.3
Q ss_pred HcCCCCCcHHHHHHHHHHHcC----C-CEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHH
Q 003887 242 KQGYEKPTSIQCQALPIILSG----R-DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYL 316 (789)
Q Consensus 242 ~~g~~~ptpiQ~~ai~~il~g----r-dvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~ 316 (789)
...|..|++-|.+++..++.. + .+++.|+.|+|||.+ +..++.++.... ...+++++||...|..+.+
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~l-l~~~~~~l~~~~------~~~il~~a~T~~Aa~~l~~ 92 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTL-TKFIIEALISTG------ETGIILAAPTHAAKKILSK 92 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHH-HHHHHHHHHHTT------CCCEEEEESSHHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHH-HHHHHHHHHhcC------CceEEEecCcHHHHHHHHh
Confidence 345788999999999977543 3 899999999999975 455566664431 2358999999988876554
Q ss_pred HHHHHhhhcCcEEEEEEcCCChHHHHHHHh----cCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHH
Q 003887 317 ETKKFAKSHGIRVSAVYGGMSKLDQFKELK----AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQ 392 (789)
Q Consensus 317 ~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~----~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~ 392 (789)
.+ ++.+..++ .+..+. .....+.. .....+..+++|||||++.+. ..+
T Consensus 93 ~~-------~~~~~T~h-------~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~iiiDE~~~~~----~~~ 144 (459)
T 3upu_A 93 LS-------GKEASTIH-------SILKINPVTYEENVLFEQ----------KEVPDLAKCRVLICDEVSMYD----RKL 144 (459)
T ss_dssp HH-------SSCEEEHH-------HHHTEEEEECSSCEEEEE----------CSCCCCSSCSEEEESCGGGCC----HHH
T ss_pred hh-------ccchhhHH-------HHhccCcccccccchhcc----------cccccccCCCEEEEECchhCC----HHH
Confidence 43 11111110 000000 00000000 112345678999999999643 335
Q ss_pred HHHHHhhcCCCceEEEEecc
Q 003887 393 IRSIVGQIRPDRQTLLFSAT 412 (789)
Q Consensus 393 i~~il~~~~~~~q~ll~SAT 412 (789)
+..++..++...+++++.-+
T Consensus 145 ~~~l~~~~~~~~~~~~vGD~ 164 (459)
T 3upu_A 145 FKILLSTIPPWCTIIGIGDN 164 (459)
T ss_dssp HHHHHHHSCTTCEEEEEECT
T ss_pred HHHHHHhccCCCEEEEECCH
Confidence 55555555555666665533
No 100
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.93 E-value=2.1e-05 Score=91.01 Aligned_cols=124 Identities=22% Similarity=0.272 Sum_probs=82.3
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003887 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~ 325 (789)
..+++.|.+++..++..+.+++.++.|+|||.. +..++..+.. .+.++++++||...+..+.+.+
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~-i~~l~~~l~~-------~g~~Vl~~ApT~~Aa~~L~e~~------- 252 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTT-TKAVADLAES-------LGLEVGLCAPTGKAARRLGEVT------- 252 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHH-HHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHH-------
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHH-HHHHHHHHHh-------cCCeEEEecCcHHHHHHhHhhh-------
Confidence 468999999999999999999999999999975 3444444322 3567899999999887665433
Q ss_pred CcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHH----HhhccccccceeEEEEcccchhccCCChHHHHHHHhhcC
Q 003887 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDM----LKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR 401 (789)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~----l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~ 401 (789)
+... .|..+|+.. +.........+++||||||+.+- ...+..++..++
T Consensus 253 ~~~a------------------------~Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~ 304 (574)
T 3e1s_A 253 GRTA------------------------STVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVP 304 (574)
T ss_dssp TSCE------------------------EEHHHHTTEETTEESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSC
T ss_pred cccH------------------------HHHHHHHcCCcchhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCc
Confidence 1111 111111100 01111233467899999999753 346667777777
Q ss_pred CCceEEEEecc
Q 003887 402 PDRQTLLFSAT 412 (789)
Q Consensus 402 ~~~q~ll~SAT 412 (789)
...+++++.-+
T Consensus 305 ~~~~lilvGD~ 315 (574)
T 3e1s_A 305 PGARVLLVGDT 315 (574)
T ss_dssp TTCEEEEEECT
T ss_pred CCCEEEEEecc
Confidence 77777776544
No 101
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.91 E-value=4.2e-05 Score=91.91 Aligned_cols=70 Identities=17% Similarity=0.285 Sum_probs=56.1
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003887 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 245 ~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~ 321 (789)
+..+++.|.+|+..++...-+++.|++|+|||.+ +..++.++... .+.++|+++||...+.++.+.+.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~-i~~~i~~l~~~------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVT-SATIVYHLSKI------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHH-HHHHHHHHHHH------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHH-HHHHHHHHHhC------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 4578999999999998877789999999999986 44455555432 2456999999999999998887764
No 102
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.87 E-value=6.5e-05 Score=90.20 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=56.3
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003887 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 245 ~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~ 321 (789)
...+++.|.+|+..++...-+++.|++|+|||.+ +..++.++... .+.++|+++||...+.++.+.+.+.
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~t-i~~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT-SATIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHH-HHHHHHHHHTT------CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHH-HHHHHHHHHHc------CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 4568999999999999887889999999999986 45556665542 3557999999999999987777653
No 103
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.10 E-value=0.0037 Score=73.82 Aligned_cols=71 Identities=18% Similarity=0.113 Sum_probs=52.8
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhh
Q 003887 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (789)
Q Consensus 247 ~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~ 323 (789)
.+++-|.+++.. ....++|.|..|||||.+ ++.-+.+++.... .....+|+|+.|+..|.++.+.+.+...
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~-l~~ri~~ll~~~~---~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRV-ITNKIAHLIRGCG---YQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHH-HHHHHHHHHHHHC---CCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHH-HHHHHHHHHHhcC---CCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 478999999875 356889999999999987 4444444443211 1234589999999999999999888754
No 104
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.97 E-value=0.004 Score=68.01 Aligned_cols=72 Identities=17% Similarity=0.085 Sum_probs=57.3
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhh
Q 003887 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (789)
Q Consensus 247 ~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~ 324 (789)
.|+|+|...+..+...+-+++..+-+.|||.+....++..++.. .+..+++++||+..|..+.+.++.+...
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~------~g~~v~~vA~t~~qA~~vf~~i~~mi~~ 234 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS------SSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 68999999998776557788999999999987666555544332 3567999999999999898888887754
No 105
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.69 E-value=0.0091 Score=69.37 Aligned_cols=143 Identities=14% Similarity=0.109 Sum_probs=86.6
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003887 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (789)
Q Consensus 247 ~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~ 326 (789)
.|+|+|...+..+...+.+++..+-++|||.+....++..++.. .+..+++++|++..|..+.+.++.+.....
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~------~~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS------SSCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC------CCCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 68999999998775567799999999999987665555555432 245799999999999999988888876443
Q ss_pred --cEEEEEEcCCChHHHHHHHhcCCcEEEeC--HHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcC-
Q 003887 327 --IRVSAVYGGMSKLDQFKELKAGCEIVIAT--PGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR- 401 (789)
Q Consensus 327 --i~v~~~~gg~~~~~~~~~l~~~~dIiV~T--p~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~- 401 (789)
++.......... ..+..|..|.+.+ |..+.- ..+.++|+||+|.+.+. ...+..+...+.
T Consensus 237 ~~~~~~~~~~~~~~----i~~~nGs~i~~~s~~~~~lrG---------~~~~~~iiDE~~~~~~~--~~l~~~~~~~l~~ 301 (592)
T 3cpe_A 237 DFLQPGIVEWNKGS----IELDNGSSIGAYASSPDAVRG---------NSFAMIYIEDCAFIPNF--HDSWLAIQPVISS 301 (592)
T ss_dssp TTTSCCEEEECSSE----EEETTSCEEEEEECCHHHHHH---------SCCSEEEEETGGGCTTH--HHHHHHHHHHHSS
T ss_pred HhhccccccCCccE----EEecCCCEEEEEeCCCCCccC---------CCcceEEEehhccCCch--hHHHHHHHHHhcc
Confidence 111000000000 0112344444332 433321 13678999999986441 223333333333
Q ss_pred -CCceEEEEe
Q 003887 402 -PDRQTLLFS 410 (789)
Q Consensus 402 -~~~q~ll~S 410 (789)
++.+++++|
T Consensus 302 ~~~~~ii~is 311 (592)
T 3cpe_A 302 GRRSKIIITT 311 (592)
T ss_dssp SSCCEEEEEE
T ss_pred CCCceEEEEe
Confidence 345555544
No 106
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.13 E-value=0.0073 Score=58.31 Aligned_cols=30 Identities=30% Similarity=0.354 Sum_probs=22.6
Q ss_pred cHHHHHHHHHHH---------cCCCEEEEccCCChhhHH
Q 003887 249 TSIQCQALPIIL---------SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 249 tpiQ~~ai~~il---------~grdvl~~a~TGsGKTla 278 (789)
.+.|.+++..+. .++.+++.+|+|+|||..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL 54 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHL 54 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHH
Confidence 456666665554 467899999999999975
No 107
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.04 E-value=0.023 Score=67.67 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=72.3
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003887 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~ 325 (789)
..+++-|.+++.. ....++|.|..|||||.+ ++.-+.+++..... ....+|+|+.|+..|.++.+.+.++....
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~v-L~~ri~~ll~~~~~---~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~ 83 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRV-LTHRIAYLMAEKHV---APWNILAITFTNKAAREMRERVQSLLGGA 83 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHH-HHHHHHHHHHTTCC---CGGGEEEEESSHHHHHHHHHHHHHHHGGG
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHH-HHHHHHHHHHhcCC---CHHHeEEEeccHHHHHHHHHHHHHHhccc
Confidence 5689999999865 356899999999999987 44445555543211 12358999999999999998888775321
Q ss_pred CcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhcc-cccc-ceeEEEEcccch
Q 003887 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKA-LTMS-RVTYLVLDEADR 383 (789)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~-~~l~-~i~~lVlDEah~ 383 (789)
...+-|+|...|...+-+.. ..+. .-.+.|+|+.+.
T Consensus 84 ----------------------~~~~~v~Tfhs~~~~ilr~~~~~~g~~~~f~i~d~~d~ 121 (724)
T 1pjr_A 84 ----------------------AEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQ 121 (724)
T ss_dssp ----------------------GTTSEEEEHHHHHHHHHHHHGGGGTCCTTCEECCHHHH
T ss_pred ----------------------ccCcEEeeHHHHHHHHHHHHHHHhCCCCCCEECCHHHH
Confidence 02367788777754433221 1110 123567787663
No 108
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.79 E-value=0.011 Score=58.12 Aligned_cols=39 Identities=15% Similarity=0.057 Sum_probs=26.1
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcH
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTR 308 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTr 308 (789)
|+=.++.+++|+|||.+.+- ++.... ..+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~-~a~r~~-------~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIR-RIRRAK-------IAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHH-HHHHHH-------HTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHH-HHHHHH-------HCCCEEEEEEecc
Confidence 34567899999999987443 333332 2366789998873
No 109
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.78 E-value=0.025 Score=55.08 Aligned_cols=40 Identities=18% Similarity=0.114 Sum_probs=25.9
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcH
Q 003887 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTR 308 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTr 308 (789)
.++-.++.+++|+|||...+ -++..+.. .+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll-~~~~~~~~-------~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELL-SFVEIYKL-------GKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHH-HHHHHHHH-------TTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHH-HHHHHHHH-------CCCeEEEEeecc
Confidence 35557889999999998743 33333222 245688888873
No 110
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.72 E-value=0.021 Score=63.17 Aligned_cols=107 Identities=17% Similarity=0.146 Sum_probs=63.2
Q ss_pred CEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHH
Q 003887 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK 343 (789)
Q Consensus 264 dvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~ 343 (789)
-.++.|+.|+|||.. +..++.. ...||++||++++..|.+.+.+. +..
T Consensus 163 v~~I~G~aGsGKTt~-----I~~~~~~--------~~~lVlTpT~~aa~~l~~kl~~~----~~~--------------- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKE-----ILSRVNF--------EEDLILVPGRQAAEMIRRRANAS----GII--------------- 210 (446)
T ss_dssp EEEEEECTTSCHHHH-----HHHHCCT--------TTCEEEESCHHHHHHHHHHHTTT----SCC---------------
T ss_pred EEEEEcCCCCCHHHH-----HHHHhcc--------CCeEEEeCCHHHHHHHHHHhhhc----Ccc---------------
Confidence 357899999999975 2233221 12599999999998887665332 100
Q ss_pred HHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEecc
Q 003887 344 ELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT 412 (789)
Q Consensus 344 ~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT 412 (789)
....+-|.|.+.++. .........+++||||||-. ++. ..+..++..++. .+++++.-+
T Consensus 211 ---~~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~sm-~~~---~~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 211 ---VATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGLM-LHT---GCVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp ---CCCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGGG-SCH---HHHHHHHHHTTC-SEEEEEECT
T ss_pred ---ccccceEEEeHHhhc--CCCCCCCCcCCEEEEeCccc-CCH---HHHHHHHHhCCC-CEEEEecCc
Confidence 012234778776543 22222222478999999984 332 233444444443 666666655
No 111
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.53 E-value=0.0087 Score=59.69 Aligned_cols=39 Identities=10% Similarity=0.004 Sum_probs=25.9
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHH
Q 003887 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRE 309 (789)
Q Consensus 263 rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTre 309 (789)
+=.++++++|+|||++.+-.+.++. ..+.+++|+.|...
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~--------~~g~kVli~k~~~d 67 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQ--------FAKQHAIVFKPCID 67 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHH--------HTTCCEEEEECC--
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH--------HCCCEEEEEEeccC
Confidence 3356899999999987544444433 23667999998753
No 112
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.00 E-value=0.087 Score=58.33 Aligned_cols=132 Identities=18% Similarity=0.245 Sum_probs=73.0
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEE-cC-cHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHH
Q 003887 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC-AP-TRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (789)
Q Consensus 263 rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl-~P-TreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~ 340 (789)
+-+++++++|+|||+... .|...+.. .+.+++++ +. .|.-+ .+.+..+....++.+.....+.
T Consensus 98 ~vI~lvG~~GsGKTTt~~--kLA~~l~~------~G~kVllv~~D~~r~~a---~eqL~~~~~~~gv~~~~~~~~~---- 162 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAG--KLAYFYKK------RGYKVGLVAADVYRPAA---YDQLLQLGNQIGVQVYGEPNNQ---- 162 (433)
T ss_dssp EEEEECCCTTSCHHHHHH--HHHHHHHH------TTCCEEEEEECCSCHHH---HHHHHHHHHTTTCCEECCTTCS----
T ss_pred eEEEEECCCCCCHHHHHH--HHHHHHHH------cCCeEEEEecCccchhH---HHHHHHHHHhcCCceeeccccC----
Confidence 357788999999997632 33333221 23445544 33 33333 2345555554455443222211
Q ss_pred HHHHHhcCCcEEEeCHHHHH-HHHhhccccccceeEEEEcccchhc---cCCChHHHHHHHhhcCCCceEEEEeccCcHH
Q 003887 341 QFKELKAGCEIVIATPGRLI-DMLKMKALTMSRVTYLVLDEADRMF---DLGFEPQIRSIVGQIRPDRQTLLFSATMPRK 416 (789)
Q Consensus 341 ~~~~l~~~~dIiV~Tp~~L~-~~l~~~~~~l~~i~~lVlDEah~m~---~~~f~~~i~~il~~~~~~~q~ll~SATl~~~ 416 (789)
.|..+. ..+. ......+++||||++-++. +..+...+..++..+.++.-+++++|+....
T Consensus 163 --------------dp~~i~~~al~--~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~ 226 (433)
T 3kl4_A 163 --------------NPIEIAKKGVD--IFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK 226 (433)
T ss_dssp --------------CHHHHHHHHHH--HTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG
T ss_pred --------------CHHHHHHHHHH--HHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH
Confidence 122221 1111 1223478899999998643 3334556667777777787788899987666
Q ss_pred HHHHHHHHh
Q 003887 417 VEKLAREIL 425 (789)
Q Consensus 417 v~~l~~~~l 425 (789)
....+..|.
T Consensus 227 a~~~a~~f~ 235 (433)
T 3kl4_A 227 AYDLASRFH 235 (433)
T ss_dssp GHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 656665553
No 113
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.96 E-value=0.017 Score=58.19 Aligned_cols=90 Identities=10% Similarity=0.137 Sum_probs=49.2
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHH
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~ 341 (789)
|.-+++.+++|+|||++.+ -++..+.. .+.+++|+.|...-- ....++...++..
T Consensus 12 G~i~litG~mGsGKTT~ll-~~~~r~~~-------~g~kVli~~~~~d~r-----~~~~i~srlG~~~------------ 66 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELI-RRLHRLEY-------ADVKYLVFKPKIDTR-----SIRNIQSRTGTSL------------ 66 (223)
T ss_dssp CEEEEEECSTTSCHHHHHH-HHHHHHHH-------TTCCEEEEEECCCGG-----GCSSCCCCCCCSS------------
T ss_pred cEEEEEECCCCCcHHHHHH-HHHHHHHh-------cCCEEEEEEeccCch-----HHHHHHHhcCCCc------------
Confidence 4457788999999998743 33433322 355688887653100 0001111112110
Q ss_pred HHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchh
Q 003887 342 FKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM 384 (789)
Q Consensus 342 ~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m 384 (789)
..+.+.+...++..+.... .-..+++|||||++.+
T Consensus 67 -------~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 67 -------PSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFF 101 (223)
T ss_dssp -------CCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGS
T ss_pred -------cccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccC
Confidence 1233556666666664322 2345899999999974
No 114
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.88 E-value=0.046 Score=63.55 Aligned_cols=113 Identities=23% Similarity=0.343 Sum_probs=74.7
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhh
Q 003887 247 KPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (789)
Q Consensus 247 ~ptpiQ~~ai~~il~g--rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~ 324 (789)
.+|.-|.+++..++.- ...++.|+-|.|||.+.-+ ++..+. ..++|.+|+.+-+..+ ..++..
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~-~~a~~~----------~~~~vtAP~~~a~~~l----~~~~~~ 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQ-LISRIA----------GRAIVTAPAKASTDVL----AQFAGE 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHH-HHHHSS----------SCEEEECSSCCSCHHH----HHHHGG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHH-HHHHHH----------hCcEEECCCHHHHHHH----HHHhhC
Confidence 6899999999988863 3468899999999965333 333331 1269999998877543 333221
Q ss_pred cCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhhcCCCc
Q 003887 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR 404 (789)
Q Consensus 325 ~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~ 404 (789)
.|-+..|..+.. .+..+++||||||=.|- .+.+..++...+
T Consensus 240 -------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp----~pll~~ll~~~~--- 280 (671)
T 2zpa_A 240 -------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIP----APLLHQLVSRFP--- 280 (671)
T ss_dssp -------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC----HHHHHHHHTTSS---
T ss_pred -------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcCC----HHHHHHHHhhCC---
Confidence 133456655432 23458899999998754 566777776432
Q ss_pred eEEEEeccCc
Q 003887 405 QTLLFSATMP 414 (789)
Q Consensus 405 q~ll~SATl~ 414 (789)
.++||.|+.
T Consensus 281 -~v~~~tTv~ 289 (671)
T 2zpa_A 281 -RTLLTTTVQ 289 (671)
T ss_dssp -EEEEEEEBS
T ss_pred -eEEEEecCC
Confidence 588888863
No 115
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.69 E-value=0.19 Score=53.20 Aligned_cols=26 Identities=12% Similarity=0.015 Sum_probs=19.1
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHh
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~ 288 (789)
+.++++.+++|+|||++ +-.++..+.
T Consensus 45 ~~~lli~GpPGTGKT~~-v~~v~~~L~ 70 (318)
T 3te6_A 45 NKLFYITNADDSTKFQL-VNDVMDELI 70 (318)
T ss_dssp CCEEEEECCCSHHHHHH-HHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHH
Confidence 36799999999999986 444445543
No 116
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.61 E-value=0.099 Score=55.40 Aligned_cols=17 Identities=29% Similarity=0.284 Sum_probs=14.9
Q ss_pred CCCEEEEccCCChhhHH
Q 003887 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvl~~a~TGsGKTla 278 (789)
+..+++.||+|+|||..
T Consensus 37 ~~~lll~G~~GtGKT~l 53 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHL 53 (324)
T ss_dssp CSSEEEECSSSSSHHHH
T ss_pred CCeEEEECCCCCcHHHH
Confidence 35899999999999975
No 117
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.52 E-value=0.22 Score=47.21 Aligned_cols=17 Identities=35% Similarity=0.429 Sum_probs=14.8
Q ss_pred CCCEEEEccCCChhhHH
Q 003887 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvl~~a~TGsGKTla 278 (789)
.+.+++.+++|+|||..
T Consensus 43 ~~~vll~G~~G~GKT~l 59 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAI 59 (187)
T ss_dssp SCEEEEESCGGGCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 46799999999999975
No 118
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.46 E-value=0.018 Score=54.10 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=24.5
Q ss_pred cceeEEEEcccchhccCCChHHHHHHHhhcCCC-ceEEEEecc
Q 003887 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD-RQTLLFSAT 412 (789)
Q Consensus 371 ~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~-~q~ll~SAT 412 (789)
.+.++|||||++.+.... ...+..+++.+... ..++++++.
T Consensus 82 ~~~~lLilDE~~~~~~~~-~~~l~~li~~~~~~g~~~iiits~ 123 (149)
T 2kjq_A 82 FEAEYLAVDQVEKLGNEE-QALLFSIFNRFRNSGKGFLLLGSE 123 (149)
T ss_dssp GGCSEEEEESTTCCCSHH-HHHHHHHHHHHHHHTCCEEEEEES
T ss_pred hCCCEEEEeCccccChHH-HHHHHHHHHHHHHcCCcEEEEECC
Confidence 457899999999855433 44555666554332 332445555
No 119
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.36 E-value=0.052 Score=54.64 Aligned_cols=40 Identities=10% Similarity=0.004 Sum_probs=28.0
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcH
Q 003887 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTR 308 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTr 308 (789)
.|+=.++.++||+|||...+-.+.++. ..+.+++|+-|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~--------~~g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQ--------IAQYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH--------TTTCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHH--------HCCCeEEEEeecC
Confidence 355678899999999987544444443 3466788888764
No 120
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.22 E-value=0.26 Score=48.27 Aligned_cols=139 Identities=16% Similarity=0.114 Sum_probs=70.7
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHH-HHHHHHHHHHHHhhhcCcEEEEEEcCCChHHH
Q 003887 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRE-LAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (789)
Q Consensus 263 rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTre-La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~ 341 (789)
-.+++...+|.|||.+++-.++..+ ..|.+|+|+.-.+. .-.-=.+.+.++ ++.+...--+.....+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~--------g~G~rV~~vQF~Kg~~~~gE~~~l~~L----~v~~~~~g~gf~~~~~ 96 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAV--------GHGKNVGVVQFIKGTWPNGERNLLEPH----GVEFQVMATGFTWETQ 96 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHH--------HTTCCEEEEESSCCSSCCHHHHHHGGG----TCEEEECCTTCCCCGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH--------HCCCeEEEEEeeCCCCCccHHHHHHhC----CcEEEEcccccccCCC
Confidence 4788889999999999877777765 44677888732110 000000112222 2332221111110000
Q ss_pred -HHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCC--hHHHHHHHhhcCCCceEEEEeccCcHHHH
Q 003887 342 -FKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGF--EPQIRSIVGQIRPDRQTLLFSATMPRKVE 418 (789)
Q Consensus 342 -~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f--~~~i~~il~~~~~~~q~ll~SATl~~~v~ 418 (789)
... +.. .....+..+. ..+.-..+++|||||+-..+..++ .+.+..++...+....+|+.+--.|+.+.
T Consensus 97 ~~~~-----~~~--~a~~~l~~a~-~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~ 168 (196)
T 1g5t_A 97 NREA-----DTA--ACMAVWQHGK-RMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDIL 168 (196)
T ss_dssp GHHH-----HHH--HHHHHHHHHH-HHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHH
T ss_pred CcHH-----HHH--HHHHHHHHHH-HHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHH
Confidence 000 000 0011111111 122235789999999987666554 35566777765555666666666777765
Q ss_pred HHH
Q 003887 419 KLA 421 (789)
Q Consensus 419 ~l~ 421 (789)
+++
T Consensus 169 e~A 171 (196)
T 1g5t_A 169 DLA 171 (196)
T ss_dssp HHC
T ss_pred HhC
Confidence 544
No 121
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.18 E-value=0.49 Score=48.51 Aligned_cols=16 Identities=31% Similarity=0.243 Sum_probs=14.3
Q ss_pred CCEEEEccCCChhhHH
Q 003887 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvl~~a~TGsGKTla 278 (789)
+.+++.+|+|+|||..
T Consensus 65 ~~vLl~G~~GtGKT~l 80 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTAL 80 (272)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 4799999999999975
No 122
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.08 E-value=0.12 Score=55.56 Aligned_cols=17 Identities=35% Similarity=0.415 Sum_probs=15.0
Q ss_pred CCCEEEEccCCChhhHH
Q 003887 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvl~~a~TGsGKTla 278 (789)
...+++.|++|+|||..
T Consensus 44 ~~~vll~G~~G~GKT~l 60 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAV 60 (387)
T ss_dssp CCCEEECBCTTSSHHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 46799999999999975
No 123
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.03 E-value=0.19 Score=49.04 Aligned_cols=16 Identities=25% Similarity=0.235 Sum_probs=14.6
Q ss_pred CCEEEEccCCChhhHH
Q 003887 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvl~~a~TGsGKTla 278 (789)
+.+++.+++|+|||..
T Consensus 55 ~~~~l~G~~GtGKT~l 70 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYL 70 (202)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 6899999999999975
No 124
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.73 E-value=0.38 Score=45.59 Aligned_cols=16 Identities=38% Similarity=0.499 Sum_probs=14.4
Q ss_pred CCEEEEccCCChhhHH
Q 003887 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvl~~a~TGsGKTla 278 (789)
+.+++.+++|+|||..
T Consensus 44 ~~~ll~G~~G~GKT~l 59 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAI 59 (195)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CceEEECCCCCCHHHH
Confidence 6799999999999975
No 125
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=93.65 E-value=0.099 Score=62.40 Aligned_cols=99 Identities=13% Similarity=0.097 Sum_probs=74.7
Q ss_pred EecCCCcchHHHH-HHhcCCCCCCCcEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCcc
Q 003887 448 HVIPSDAEKLPWL-LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYH 522 (789)
Q Consensus 448 ~~~~~~~~k~~~L-~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~ 522 (789)
...+....|-... +..+.....+.++||.++++.-+..+++.+.+. ++.+..+||+++..+|..++..+.+|..+
T Consensus 394 l~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~ 473 (780)
T 1gm5_A 394 LQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQID 473 (780)
T ss_dssp EECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCC
T ss_pred EEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Confidence 3444555664432 222222223568999999999888887777654 78999999999999999999999999999
Q ss_pred EEEeeh-hhhccCCCCCccEEEEEc
Q 003887 523 VLIATD-VAARGLDIKSIKSVVNFD 546 (789)
Q Consensus 523 VLVaT~-v~~~GlDI~~v~~VI~~d 546 (789)
|+|+|. .+...+.+.++.+||.=.
T Consensus 474 IvVgT~~ll~~~~~~~~l~lVVIDE 498 (780)
T 1gm5_A 474 VVIGTHALIQEDVHFKNLGLVIIDE 498 (780)
T ss_dssp EEEECTTHHHHCCCCSCCCEEEEES
T ss_pred EEEECHHHHhhhhhccCCceEEecc
Confidence 999994 455678899998888533
No 126
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.60 E-value=0.32 Score=53.88 Aligned_cols=132 Identities=17% Similarity=0.178 Sum_probs=70.3
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEc--CcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHH
Q 003887 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA--PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (789)
Q Consensus 263 rdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~--PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~ 340 (789)
.-+++++++|+|||+.. .-+..++.. .+.++++++ |.|.-+ ++.++.++...++.+.....+..
T Consensus 101 ~vIlivG~~G~GKTTt~-~kLA~~l~~-------~G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~~~~~~~d--- 166 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTV-AKLARYFQK-------RGYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVFGNPQEKD--- 166 (443)
T ss_dssp EEEEEECCTTSSHHHHH-HHHHHHHHT-------TTCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEECCTTCCC---
T ss_pred eEEEEECcCCCCHHHHH-HHHHHHHHH-------CCCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEEecCCCCC---
Confidence 35788999999999863 333333322 244455544 344433 34466666656665543322221
Q ss_pred HHHHHhcCCcEEEeCHHHHH-HHHhhccccccceeEEEEcccchhccC-CChHHHHHHHhhcCCCceEEEEeccCcHHHH
Q 003887 341 QFKELKAGCEIVIATPGRLI-DMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMPRKVE 418 (789)
Q Consensus 341 ~~~~l~~~~dIiV~Tp~~L~-~~l~~~~~~l~~i~~lVlDEah~m~~~-~f~~~i~~il~~~~~~~q~ll~SATl~~~v~ 418 (789)
|..+. +.+.. .....+++||||.+=++... .....+..+.....++.-++++.|+......
T Consensus 167 ---------------p~~i~~~al~~--a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~ 229 (443)
T 3dm5_A 167 ---------------AIKLAKEGVDY--FKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY 229 (443)
T ss_dssp ---------------HHHHHHHHHHH--HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH
T ss_pred ---------------HHHHHHHHHHH--HHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH
Confidence 21111 11111 11124678999988643211 1233455555666677778888888766665
Q ss_pred HHHHHHh
Q 003887 419 KLAREIL 425 (789)
Q Consensus 419 ~l~~~~l 425 (789)
..+..|.
T Consensus 230 ~~a~~f~ 236 (443)
T 3dm5_A 230 NQALAFK 236 (443)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665554
No 127
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.28 E-value=0.33 Score=52.27 Aligned_cols=16 Identities=31% Similarity=0.293 Sum_probs=14.2
Q ss_pred CCEEEEccCCChhhHH
Q 003887 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvl~~a~TGsGKTla 278 (789)
+.+++.+++|+|||..
T Consensus 46 ~~vll~G~~G~GKT~l 61 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFV 61 (384)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred CcEEEECCCCCCHHHH
Confidence 5699999999999975
No 128
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=93.25 E-value=0.14 Score=64.61 Aligned_cols=72 Identities=26% Similarity=0.208 Sum_probs=52.7
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003887 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (789)
Q Consensus 246 ~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~ 321 (789)
.++|+-|.++|..- ++++++.|..|||||.+.+--++..+..... .-...++|+|++|+..|..+.+.+...
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~--~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEEN--PIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSS--CCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCC--CCCccceEEEeccHHHHHHHHHHHHHH
Confidence 46899999998653 7899999999999998744444444433210 012346999999999999998888774
No 129
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.12 E-value=0.18 Score=54.40 Aligned_cols=15 Identities=27% Similarity=0.470 Sum_probs=13.7
Q ss_pred CEEEEccCCChhhHH
Q 003887 264 DIIGIAKTGSGKTAA 278 (789)
Q Consensus 264 dvl~~a~TGsGKTla 278 (789)
.+++.|++|+|||..
T Consensus 46 ~~li~G~~G~GKTtl 60 (389)
T 1fnn_A 46 RATLLGRPGTGKTVT 60 (389)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 699999999999975
No 130
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.10 E-value=0.6 Score=45.36 Aligned_cols=39 Identities=18% Similarity=0.206 Sum_probs=23.6
Q ss_pred cceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEe
Q 003887 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 371 ~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~S 410 (789)
....+|||||+|.+... ....+..++........+|+.+
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~ 139 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSC 139 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45678999999986532 2334555555544455555444
No 131
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.01 E-value=0.25 Score=54.95 Aligned_cols=44 Identities=16% Similarity=0.400 Sum_probs=25.3
Q ss_pred ceeEEEEcccchhccC-CChHHHHHHHhhc-CCCceEEEEeccCcH
Q 003887 372 RVTYLVLDEADRMFDL-GFEPQIRSIVGQI-RPDRQTLLFSATMPR 415 (789)
Q Consensus 372 ~i~~lVlDEah~m~~~-~f~~~i~~il~~~-~~~~q~ll~SATl~~ 415 (789)
...+|||||+|.+... .....+..++..+ ....++|+.|...+.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~ 239 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQ 239 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGG
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHH
Confidence 5678999999998753 1233344444443 334555555444343
No 132
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=92.71 E-value=0.083 Score=52.59 Aligned_cols=41 Identities=17% Similarity=0.074 Sum_probs=26.2
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHH
Q 003887 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRE 309 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTre 309 (789)
.|.=.++.+++|+|||... +-.+.... ..+.+++|+.|...
T Consensus 27 ~G~I~vitG~M~sGKTT~L-lr~~~r~~-------~~g~kvli~kp~~D 67 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEEL-IRRLRRGI-------YAKQKVVVFKPAID 67 (219)
T ss_dssp CCEEEEEEECTTSCHHHHH-HHHHHHHH-------HTTCCEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHHH-HHHHHHHH-------HcCCceEEEEeccC
Confidence 3455688999999999863 33333332 23566899988653
No 133
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.60 E-value=0.8 Score=48.35 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=29.3
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHH-----cCCCEEEEccCCChhhHH
Q 003887 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIIL-----SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 223 pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il-----~grdvl~~a~TGsGKTla 278 (789)
|-.+|.++.-...+.+.|...=. .|. ..|.++ ..+.+|+.+|+|+|||+.
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~l 67 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYL 67 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 44668888766666666653210 000 001111 125699999999999975
No 134
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=92.54 E-value=0.18 Score=53.72 Aligned_cols=39 Identities=15% Similarity=0.236 Sum_probs=25.9
Q ss_pred cHHHHHHHHHHH----cCC---CEEEEccCCChhhHHHHHHHHHHHh
Q 003887 249 TSIQCQALPIIL----SGR---DIIGIAKTGSGKTAAFVLPMIVHIM 288 (789)
Q Consensus 249 tpiQ~~ai~~il----~gr---dvl~~a~TGsGKTla~llp~l~~l~ 288 (789)
.|+|.+++..+. +++ .+++.||.|+|||.. ...+...+.
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~-a~~la~~l~ 49 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDAL-IYALSRYLL 49 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHH-HHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHH-HHHHHHHHh
Confidence 466777665543 443 389999999999975 344445554
No 135
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=92.41 E-value=0.29 Score=53.49 Aligned_cols=96 Identities=16% Similarity=0.206 Sum_probs=71.2
Q ss_pred ecCCCcchHHH-HHHhcCCCCCCCcEEEEecccccHHHHHHHHHH---cCCceeeccCCCCHHHHHHHHHHhhcCCccEE
Q 003887 449 VIPSDAEKLPW-LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQ---KGFKAAALHGDKDQASRMEILQKFKSGVYHVL 524 (789)
Q Consensus 449 ~~~~~~~k~~~-L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~---~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VL 524 (789)
..+....|-.. ++-.+.......++||.+|++.-+..+++.+.. .++.+..+||+.+..++...+..+..+..+|+
T Consensus 42 ~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Ii 121 (414)
T 3oiy_A 42 VAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHIL 121 (414)
T ss_dssp CSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEE
T ss_pred EeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEE
Confidence 34445566442 222222223456899999999999999999988 57899999999999999999999999999999
Q ss_pred Eeeh-hhh---ccCCCCCccEEEE
Q 003887 525 IATD-VAA---RGLDIKSIKSVVN 544 (789)
Q Consensus 525 VaT~-v~~---~GlDI~~v~~VI~ 544 (789)
|+|. .+. .-+++..+.+||.
T Consensus 122 v~Tp~~l~~~l~~~~~~~~~~iVi 145 (414)
T 3oiy_A 122 VFSTQFVSKNREKLSQKRFDFVFV 145 (414)
T ss_dssp EEEHHHHHHCHHHHTTCCCSEEEE
T ss_pred EECHHHHHHHHHHhccccccEEEE
Confidence 9994 331 1255667777775
No 136
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.16 E-value=0.092 Score=54.34 Aligned_cols=53 Identities=21% Similarity=0.251 Sum_probs=30.0
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHH-HHHHHHH--HcCCCEEEEccCCChhhHH
Q 003887 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQ-CQALPII--LSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 223 pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ-~~ai~~i--l~grdvl~~a~TGsGKTla 278 (789)
|-.+|+++.-....++.|...=. .+.+ .+.+..+ ...+.+++.+|+|+|||..
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLL 67 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 34568887666666665543210 0000 1111111 2346799999999999975
No 137
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=92.01 E-value=0.17 Score=53.51 Aligned_cols=41 Identities=20% Similarity=0.231 Sum_probs=25.0
Q ss_pred cceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEec
Q 003887 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSA 411 (789)
Q Consensus 371 ~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SA 411 (789)
....+|||||+|.+........+..++...+...++|+.+.
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n 144 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITAN 144 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEES
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 36789999999997621223445555555555555555433
No 138
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=91.74 E-value=0.17 Score=49.63 Aligned_cols=39 Identities=10% Similarity=0.040 Sum_probs=25.9
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCc
Q 003887 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PT 307 (789)
.++=.++.+++|+|||.. |+-.+..... .+.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~-Ll~~i~n~~~-------~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTE-LMRRVRRFQI-------AQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHH-HHHHHHHHHH-------TTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHH-HHHHHHHHHH-------cCCeEEEEccc
Confidence 355678899999999965 3444433322 24568888776
No 139
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=91.57 E-value=0.79 Score=47.90 Aligned_cols=53 Identities=19% Similarity=0.296 Sum_probs=29.3
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHHH--HHHHH-HHcCCCEEEEccCCChhhHH
Q 003887 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQC--QALPI-ILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 223 pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~--~ai~~-il~grdvl~~a~TGsGKTla 278 (789)
|-.+|+++.-...+.+.|...- . .|... ..... +..++.+++.+|+|+|||+.
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v-~--~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~l 65 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELV-Q--YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 65 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHH-H--HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH-H--HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHH
Confidence 4467888766666655554320 0 00000 00000 12356799999999999975
No 140
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.50 E-value=0.53 Score=50.40 Aligned_cols=17 Identities=41% Similarity=0.481 Sum_probs=15.0
Q ss_pred CCCEEEEccCCChhhHH
Q 003887 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvl~~a~TGsGKTla 278 (789)
++.+++.|+.|+|||..
T Consensus 45 ~~~vli~G~~G~GKTtl 61 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAV 61 (386)
T ss_dssp CCCEEEEECTTSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46799999999999975
No 141
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.27 E-value=0.65 Score=48.90 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=15.3
Q ss_pred CCCEEEEccCCChhhHH
Q 003887 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvl~~a~TGsGKTla 278 (789)
++++++.+++|+|||..
T Consensus 152 ~~~lll~G~~GtGKT~L 168 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYL 168 (308)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 57899999999999975
No 142
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.27 E-value=0.2 Score=49.87 Aligned_cols=18 Identities=22% Similarity=0.117 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCChhhHH
Q 003887 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla 278 (789)
.++.+++.+++|+|||..
T Consensus 51 ~~~~~ll~G~~G~GKT~l 68 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHL 68 (242)
T ss_dssp SCSEEEEECSTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 357899999999999975
No 143
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=90.93 E-value=0.17 Score=46.79 Aligned_cols=20 Identities=10% Similarity=0.016 Sum_probs=17.0
Q ss_pred HHcCCCEEEEccCCChhhHH
Q 003887 259 ILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 259 il~grdvl~~a~TGsGKTla 278 (789)
+....++++.+++|+|||..
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 44668999999999999964
No 144
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=90.86 E-value=0.23 Score=51.94 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=14.3
Q ss_pred CCEEEEccCCChhhHH
Q 003887 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvl~~a~TGsGKTla 278 (789)
.++++.+|+|+|||..
T Consensus 68 ~~vll~G~~GtGKT~l 83 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTV 83 (309)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4699999999999975
No 145
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=90.54 E-value=1.6 Score=46.14 Aligned_cols=16 Identities=31% Similarity=0.347 Sum_probs=14.5
Q ss_pred CCEEEEccCCChhhHH
Q 003887 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvl~~a~TGsGKTla 278 (789)
..+++.+++|+|||..
T Consensus 56 ~~vll~G~~GtGKT~l 71 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTL 71 (338)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECcCCCCHHHH
Confidence 5899999999999975
No 146
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.38 E-value=0.55 Score=49.99 Aligned_cols=43 Identities=12% Similarity=0.300 Sum_probs=27.6
Q ss_pred ccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEeccC
Q 003887 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl 413 (789)
.....+|||||+|. ++......+..++...+....+|+.|..+
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 34678999999998 44334456667777666666666655544
No 147
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=90.22 E-value=2.9 Score=40.78 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=13.4
Q ss_pred CEEEEccCCChhhHH
Q 003887 264 DIIGIAKTGSGKTAA 278 (789)
Q Consensus 264 dvl~~a~TGsGKTla 278 (789)
.+++.+++|+|||..
T Consensus 47 ~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 47 AYLFSGTRGVGKTSI 61 (250)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 589999999999975
No 148
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=89.32 E-value=1.4 Score=41.79 Aligned_cols=71 Identities=20% Similarity=0.235 Sum_probs=52.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHH---HHhc-CCcEEEeCHHHHHHHHhhccccccce
Q 003887 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (789)
Q Consensus 298 gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~---~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i 373 (789)
..++||.|+++..+..++..+... ++.+..++|+.+..+... .+.. ...|+|||. .+ ...+++..+
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~-~~Gid~~~~ 103 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VC-ARGIDVKQV 103 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SC-CTTTCCTTE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----ch-hcCCCcccC
Confidence 567999999999998887777654 788999999987655433 2333 478999992 22 234567788
Q ss_pred eEEEE
Q 003887 374 TYLVL 378 (789)
Q Consensus 374 ~~lVl 378 (789)
.+||.
T Consensus 104 ~~Vi~ 108 (175)
T 2rb4_A 104 TIVVN 108 (175)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 88885
No 149
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=89.31 E-value=4.8 Score=40.33 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=14.6
Q ss_pred CCCEEEEccCCChhhHH
Q 003887 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvl~~a~TGsGKTla 278 (789)
.+.+++.+|+|+|||..
T Consensus 39 ~~~vll~G~~GtGKT~l 55 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLL 55 (262)
T ss_dssp CCEEEEESCTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 35789999999999975
No 150
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=89.23 E-value=2.3 Score=41.14 Aligned_cols=71 Identities=20% Similarity=0.266 Sum_probs=51.9
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHH---HHh-cCCcEEEeCHHHHHHHHhhccccccce
Q 003887 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELK-AGCEIVIATPGRLIDMLKMKALTMSRV 373 (789)
Q Consensus 298 gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~---~l~-~~~dIiV~Tp~~L~~~l~~~~~~l~~i 373 (789)
++++||.|+++..+..+.+.+... ++.+..++|+.+..+... .+. ....|+|+| +.+. ..+++..+
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~-~Gldi~~v 123 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVAS-KGLDFPAI 123 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHH-TTCCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchh-cCCCcccC
Confidence 456999999999999888877765 788999999987654433 233 258899999 2332 34567778
Q ss_pred eEEEE
Q 003887 374 TYLVL 378 (789)
Q Consensus 374 ~~lVl 378 (789)
++||.
T Consensus 124 ~~VI~ 128 (191)
T 2p6n_A 124 QHVIN 128 (191)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 87776
No 151
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=89.22 E-value=1.1 Score=41.93 Aligned_cols=73 Identities=21% Similarity=0.357 Sum_probs=52.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHH---HHhc-CCcEEEeCHHHHHHHHhhccccccce
Q 003887 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (789)
Q Consensus 298 gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~---~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i 373 (789)
+.++||.|+++..+..+.+.+... ++.+..++|+.+..+... .+.. ...|+|+|. .+ ...+++..+
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gld~~~~ 104 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VA-ARGIDIENI 104 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GG-TTTCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hh-hcCCchhcC
Confidence 456899999999999888777765 788999999887655433 2333 478999992 22 234567778
Q ss_pred eEEEEcc
Q 003887 374 TYLVLDE 380 (789)
Q Consensus 374 ~~lVlDE 380 (789)
++||.-.
T Consensus 105 ~~Vi~~~ 111 (163)
T 2hjv_A 105 SLVINYD 111 (163)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 8877643
No 152
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=88.97 E-value=2.1 Score=41.89 Aligned_cols=72 Identities=21% Similarity=0.291 Sum_probs=54.7
Q ss_pred CCcEEEEecccccHHHHHHHHHHc-----CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeeh-hh-----hccCCCCC
Q 003887 470 DGDVLVFASKKTTVDEIESQLAQK-----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA-----ARGLDIKS 538 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~-----~~GlDI~~ 538 (789)
..++||.|+++.-+..+++.+.+. ++.+..++|+.+...+.. .+..+..+|+|+|. .+ ...+++..
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 348999999999999998888765 688999999998765543 34556779999994 22 13467778
Q ss_pred ccEEEE
Q 003887 539 IKSVVN 544 (789)
Q Consensus 539 v~~VI~ 544 (789)
+++||.
T Consensus 159 ~~~lVi 164 (220)
T 1t6n_A 159 IKHFIL 164 (220)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888775
No 153
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=88.87 E-value=2.9 Score=44.10 Aligned_cols=50 Identities=20% Similarity=0.281 Sum_probs=28.8
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHH-----cCCCEEEEccCCChhhHH
Q 003887 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIIL-----SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 223 pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il-----~grdvl~~a~TGsGKTla 278 (789)
|-.+|++++-...+.+.|...=. .|.+ .|.++ ..+.+|+.+|+|+|||+.
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYL 61 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCceEEEECCCCccHHHH
Confidence 34678888766666665543200 0000 01111 126799999999999975
No 154
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.76 E-value=1.4 Score=48.06 Aligned_cols=53 Identities=21% Similarity=0.315 Sum_probs=31.5
Q ss_pred CCCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHH
Q 003887 223 PVKTFEDCGFSTQLMHAISKQ---GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 223 pi~sf~~~~l~~~l~~~l~~~---g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla 278 (789)
|-.+|++.+=-+...+.|+.. .+..|--++.-.+ ---+.+|+.+|+|+|||+.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHH
Confidence 557899987666666666532 1111111111111 1237899999999999975
No 155
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=88.74 E-value=1.2 Score=55.51 Aligned_cols=99 Identities=10% Similarity=0.132 Sum_probs=75.1
Q ss_pred EEEecCCCcchHHHHH-HhcCCCCCCCcEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCC
Q 003887 446 VVHVIPSDAEKLPWLL-EKLPGMIDDGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGV 520 (789)
Q Consensus 446 ~~~~~~~~~~k~~~L~-~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~ 520 (789)
.+...+....|-...+ ..+.......++||.|+++.-+...++.|.+. ++.+..+++..+..++..++..+..|.
T Consensus 627 ~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~ 706 (1151)
T 2eyq_A 627 RLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGK 706 (1151)
T ss_dssp EEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCC
Confidence 4445555666654322 22211224568999999999888888887653 578999999999999999999999999
Q ss_pred ccEEEee-hhhhccCCCCCccEEEE
Q 003887 521 YHVLIAT-DVAARGLDIKSIKSVVN 544 (789)
Q Consensus 521 ~~VLVaT-~v~~~GlDI~~v~~VI~ 544 (789)
++|+|+| ..+...+.+.++.+||.
T Consensus 707 ~dIvV~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 707 IDILIGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp CSEEEECTHHHHSCCCCSSEEEEEE
T ss_pred CCEEEECHHHHhCCccccccceEEE
Confidence 9999999 56667788888888775
No 156
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=88.58 E-value=0.56 Score=58.22 Aligned_cols=97 Identities=15% Similarity=0.178 Sum_probs=72.3
Q ss_pred EecCCCcchHHHHHHh-cCCCCCCCcEEEEecccccHHHHHHHHHH---cCCceeeccCCCCHHHHHHHHHHhhcCCccE
Q 003887 448 HVIPSDAEKLPWLLEK-LPGMIDDGDVLVFASKKTTVDEIESQLAQ---KGFKAAALHGDKDQASRMEILQKFKSGVYHV 523 (789)
Q Consensus 448 ~~~~~~~~k~~~L~~~-L~~~~~~~kvLVF~~s~~~a~~l~~~L~~---~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~V 523 (789)
...+....|-...+-. +.......++||.+++++-+..+++.|.. .++.+..+||+++..+|...+..+..|..+|
T Consensus 98 v~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~I 177 (1104)
T 4ddu_A 98 MVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHI 177 (1104)
T ss_dssp ECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSE
T ss_pred EEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCE
Confidence 3444556665433222 22223456899999999999999999988 5678999999999989999999999999999
Q ss_pred EEeeh-hhhc---cCCCCCccEEEE
Q 003887 524 LIATD-VAAR---GLDIKSIKSVVN 544 (789)
Q Consensus 524 LVaT~-v~~~---GlDI~~v~~VI~ 544 (789)
||+|. .+.. -+++.++.+||.
T Consensus 178 lV~Tp~rL~~~l~~l~~~~l~~lVi 202 (1104)
T 4ddu_A 178 LVFSTQFVSKNREKLSQKRFDFVFV 202 (1104)
T ss_dssp EEEEHHHHHHSHHHHHTSCCSEEEE
T ss_pred EEECHHHHHHHHHhhcccCcCEEEE
Confidence 99994 3321 255677888885
No 157
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=88.23 E-value=1.9 Score=44.92 Aligned_cols=39 Identities=18% Similarity=0.257 Sum_probs=23.7
Q ss_pred cceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEe
Q 003887 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 371 ~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~S 410 (789)
....+|||||+|.+... ....+..++...+....+|+.+
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45789999999987532 1234455555545555555543
No 158
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=87.54 E-value=2.9 Score=41.34 Aligned_cols=93 Identities=16% Similarity=0.144 Sum_probs=62.5
Q ss_pred EEecCCCcchHHH----HHHhcCCCCCCCcEEEEecccccHHHHHHHHHHc-----CCceeeccCCCCHHHHHHHHHHhh
Q 003887 447 VHVIPSDAEKLPW----LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK-----GFKAAALHGDKDQASRMEILQKFK 517 (789)
Q Consensus 447 ~~~~~~~~~k~~~----L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~~~~~eR~~~l~~F~ 517 (789)
+...+....|-.. ++..+.......++||.|++++-+..+++.+... ++.+..++|+....++...+
T Consensus 65 l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---- 140 (230)
T 2oxc_A 65 IVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL---- 140 (230)
T ss_dssp EEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT----
T ss_pred EEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc----
Confidence 3344555666543 2333333223468999999999999999888764 67889999999876655443
Q ss_pred cCCccEEEeeh-hhh-----ccCCCCCccEEEE
Q 003887 518 SGVYHVLIATD-VAA-----RGLDIKSIKSVVN 544 (789)
Q Consensus 518 ~G~~~VLVaT~-v~~-----~GlDI~~v~~VI~ 544 (789)
...+|+|+|. .+. ..+++..+++||.
T Consensus 141 -~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 141 -KKCHIAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp -TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred -cCCCEEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 2578999994 221 3456777777764
No 159
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.37 E-value=1 Score=47.76 Aligned_cols=40 Identities=20% Similarity=0.208 Sum_probs=24.6
Q ss_pred cceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEec
Q 003887 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSA 411 (789)
Q Consensus 371 ~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SA 411 (789)
....+|||||+|.+... ....+..++...+....+|+.+.
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEeC
Confidence 35689999999987532 12345555555555555555443
No 160
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=87.10 E-value=1.9 Score=40.48 Aligned_cols=73 Identities=19% Similarity=0.343 Sum_probs=51.9
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHH---HHhc-CCcEEEeCHHHHHHHHhhccccccce
Q 003887 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (789)
Q Consensus 298 gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~---~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i 373 (789)
+.++||.|+++..+..+...+... ++.+..++|+.+..+... .+.. ...|+|||. .+ ...+++..+
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~G~d~~~~ 99 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LL-ARGIDVQQV 99 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GG-TTTCCCCSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hh-hcCCCcccC
Confidence 456999999999998888777664 788999999987655433 2333 478999993 22 234567778
Q ss_pred eEEEEcc
Q 003887 374 TYLVLDE 380 (789)
Q Consensus 374 ~~lVlDE 380 (789)
.+||.-.
T Consensus 100 ~~Vi~~~ 106 (165)
T 1fuk_A 100 SLVINYD 106 (165)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 8777643
No 161
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=87.05 E-value=15 Score=38.33 Aligned_cols=52 Identities=13% Similarity=0.257 Sum_probs=29.1
Q ss_pred CHHHHHHHHhhccccccceeEEEEcccchhcc---CCChHHHHHHHhhcCCCceEEEEe
Q 003887 355 TPGRLIDMLKMKALTMSRVTYLVLDEADRMFD---LGFEPQIRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 355 Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~---~~f~~~i~~il~~~~~~~q~ll~S 410 (789)
+...++..+..... .--+|||||+|.+.. ..+...+..++... +...+|+.+
T Consensus 123 ~~~~l~~~l~~~~~---~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~g 177 (357)
T 2fna_A 123 SFANLLESFEQASK---DNVIIVLDEAQELVKLRGVNLLPALAYAYDNL-KRIKFIMSG 177 (357)
T ss_dssp CHHHHHHHHHHTCS---SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHC-TTEEEEEEE
T ss_pred hHHHHHHHHHhcCC---CCeEEEEECHHHhhccCchhHHHHHHHHHHcC-CCeEEEEEc
Confidence 34455555543211 244899999999864 35666666665543 234444433
No 162
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=86.96 E-value=2.9 Score=41.47 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=28.5
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHH
Q 003887 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETK 319 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~ 319 (789)
.|.-+++.+++|+|||... +-++..+... +..++++.-. ....++.+.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~-~~~~~~~~~~-------~~~v~~~~~e-~~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFS-QQFLWNGLKM-------GEPGIYVALE-EHPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHH-HHHHHHHHHT-------TCCEEEEESS-SCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHHHHHhc-------CCeEEEEEcc-CCHHHHHHHHH
Confidence 4567889999999999853 3333333321 3346665432 23345544443
No 163
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=86.93 E-value=1.4 Score=47.78 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=15.1
Q ss_pred CCCEEEEccCCChhhHH
Q 003887 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvl~~a~TGsGKTla 278 (789)
.+.+|+.+++|+|||+.
T Consensus 148 ~~~vLL~GppGtGKT~l 164 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTML 164 (389)
T ss_dssp CSEEEEESSTTSCHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46899999999999975
No 164
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=86.92 E-value=2.2 Score=47.32 Aligned_cols=115 Identities=17% Similarity=0.142 Sum_probs=53.8
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEE-EcCCChH
Q 003887 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAV-YGGMSKL 339 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~-~gg~~~~ 339 (789)
.|.-+++.|++|+|||.. ++-++.++... .+..++++..-- -..|+...+.... .++....+ .|... .
T Consensus 202 ~G~liiI~G~pG~GKTtl-~l~ia~~~~~~------~g~~Vl~~s~E~-s~~~l~~r~~~~~--~~~~~~~l~~g~l~-~ 270 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAF-ALNIAQNVATK------TNENVAIFSLEM-SAQQLVMRMLCAE--GNINAQNLRTGKLT-P 270 (454)
T ss_dssp TTCEEEEECCTTSCHHHH-HHHHHHHHHHH------SSCCEEEEESSS-CHHHHHHHHHHHH--HTCCHHHHHTSCCC-H
T ss_pred CCCEEEEECCCCCCHHHH-HHHHHHHHHHh------CCCcEEEEECCC-CHHHHHHHHHHHH--cCCCHHHHhcCCCC-H
Confidence 345688899999999975 44444444321 133466664321 1233433322110 11111000 11122 1
Q ss_pred HHHHHH------hcCCcEEEe-----CHHHHHHHHhhccccccceeEEEEcccchhccC
Q 003887 340 DQFKEL------KAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL 387 (789)
Q Consensus 340 ~~~~~l------~~~~dIiV~-----Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~ 387 (789)
..+..+ .....+.|. |.+.+...+..-. .-..+++||||+.+.|...
T Consensus 271 ~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~-~~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 271 EDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLK-QESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp HHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHH-TTTCCCEEEEECGGGSCCS
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH-HHcCCCEEEEccHHHhccC
Confidence 222111 112445553 4555554443211 1235889999999988743
No 165
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=86.71 E-value=1.1 Score=51.86 Aligned_cols=79 Identities=20% Similarity=0.224 Sum_probs=63.0
Q ss_pred EEecCCCcchHHH-HHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHh--hcCCccE
Q 003887 447 VHVIPSDAEKLPW-LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKF--KSGVYHV 523 (789)
Q Consensus 447 ~~~~~~~~~k~~~-L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F--~~G~~~V 523 (789)
+...+....|-.. ++-.+. ..+.+||.++++.-+......|...++.+..++|+++..++..++..+ ..+..+|
T Consensus 63 lv~~pTGsGKTl~~~lpal~---~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~I 139 (591)
T 2v1x_A 63 FLVMPTGGGKSLCYQLPALC---SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKL 139 (591)
T ss_dssp EEECCTTSCTTHHHHHHHHT---SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCE
T ss_pred EEEECCCChHHHHHHHHHHH---cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCE
Confidence 3445555566432 233332 357999999999999999999999999999999999999999988888 5788999
Q ss_pred EEeeh
Q 003887 524 LIATD 528 (789)
Q Consensus 524 LVaT~ 528 (789)
||+|.
T Consensus 140 lv~Tp 144 (591)
T 2v1x_A 140 IYVTP 144 (591)
T ss_dssp EEECH
T ss_pred EEECh
Confidence 99996
No 166
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=86.60 E-value=2 Score=42.32 Aligned_cols=71 Identities=15% Similarity=0.261 Sum_probs=52.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHH---Hhc-CCcEEEeCHHHHHHHHhhccccccce
Q 003887 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (789)
Q Consensus 298 gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~---l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i 373 (789)
+.++||.|+++.-+..+.+.+.+. ++.+..++|+.+..++... +.. ...|+|||. .+ ...+++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~-~~Gidi~~v 100 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VA-ARGLDIPQV 100 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TT-TCSSSCCCB
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hh-hcCCCCccC
Confidence 456899999999999888777765 7899999999887655433 333 478999992 22 234567788
Q ss_pred eEEEE
Q 003887 374 TYLVL 378 (789)
Q Consensus 374 ~~lVl 378 (789)
.+||.
T Consensus 101 ~~Vi~ 105 (212)
T 3eaq_A 101 DLVVH 105 (212)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 87774
No 167
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=86.44 E-value=1.7 Score=41.23 Aligned_cols=73 Identities=15% Similarity=0.140 Sum_probs=52.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHH---Hhc-CCcEEEeCHHHHHHHHhhccccccce
Q 003887 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (789)
Q Consensus 298 gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~---l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i 373 (789)
+.++||.|+++..+..+++.+... ++.+..++|+.+..+.... +.. ...|+|||. .+ ...+++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~-~~Gldi~~~ 100 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LF-GRGMDIERV 100 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----CC-STTCCGGGC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-----ch-hcCcchhhC
Confidence 456999999999999888777765 7889999999876554332 333 478999993 22 234567778
Q ss_pred eEEEEcc
Q 003887 374 TYLVLDE 380 (789)
Q Consensus 374 ~~lVlDE 380 (789)
.+||.=.
T Consensus 101 ~~Vi~~d 107 (172)
T 1t5i_A 101 NIAFNYD 107 (172)
T ss_dssp SEEEESS
T ss_pred CEEEEEC
Confidence 8887643
No 168
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=86.11 E-value=1.9 Score=47.78 Aligned_cols=115 Identities=22% Similarity=0.099 Sum_probs=54.3
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHH
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~ 341 (789)
|.-++++|++|+|||.. ++-+..++... .+..++++..- .-..|+...+..... ++....+..|.-....
T Consensus 200 G~l~ii~G~pg~GKT~l-al~ia~~~a~~------~g~~vl~~slE-~~~~~l~~R~~~~~~--~i~~~~l~~g~l~~~~ 269 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAF-ALTIAQNAALK------EGVGVGIYSLE-MPAAQLTLRMMCSEA--RIDMNRVRLGQLTDRD 269 (444)
T ss_dssp TCEEEEEECTTSCHHHH-HHHHHHHHHHT------TCCCEEEEESS-SCHHHHHHHHHHHHT--TCCTTTCCGGGCCHHH
T ss_pred CcEEEEEeCCCCCHHHH-HHHHHHHHHHh------CCCeEEEEECC-CCHHHHHHHHHHHHc--CCCHHHHhCCCCCHHH
Confidence 35578899999999975 44444444321 13346665432 222344333322111 2111111111111222
Q ss_pred HHHHh------cCCcEEEe-----CHHHHHHHHhhccccccceeEEEEcccchhccC
Q 003887 342 FKELK------AGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL 387 (789)
Q Consensus 342 ~~~l~------~~~dIiV~-----Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~ 387 (789)
+..+. ....|.|. |...|...+.+-.. -..+++||||..+.|...
T Consensus 270 ~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~-~~~~~lIvID~l~~~~~~ 325 (444)
T 2q6t_A 270 FSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVS-QNQVGLIIIDYLQLMSGP 325 (444)
T ss_dssp HHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHH-HSCCCEEEEECGGGCBCC
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEcChhhcCCC
Confidence 22211 12445553 45555544432111 125889999999988643
No 169
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=85.72 E-value=3.5 Score=43.77 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=13.2
Q ss_pred CEEEEccCCChhhHH
Q 003887 264 DIIGIAKTGSGKTAA 278 (789)
Q Consensus 264 dvl~~a~TGsGKTla 278 (789)
.+++.|+.|+|||..
T Consensus 40 ~~ll~G~~G~GKT~l 54 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSI 54 (373)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378999999999975
No 170
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=85.53 E-value=0.86 Score=49.42 Aligned_cols=16 Identities=38% Similarity=0.551 Sum_probs=13.3
Q ss_pred CCEEE--EccCCChhhHH
Q 003887 263 RDIIG--IAKTGSGKTAA 278 (789)
Q Consensus 263 rdvl~--~a~TGsGKTla 278 (789)
..+++ .++.|+|||..
T Consensus 51 ~~~li~i~G~~G~GKT~L 68 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTL 68 (412)
T ss_dssp EEEEEECTTCCSSSHHHH
T ss_pred CEEEEeCcCcCCCCHHHH
Confidence 45777 89999999975
No 171
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=85.36 E-value=0.52 Score=50.78 Aligned_cols=27 Identities=11% Similarity=0.112 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHH
Q 003887 580 ARFAGELVNSLIAAGQNVSMELMDLAM 606 (789)
Q Consensus 580 ~~~~~~l~~~L~~~~~~vp~~l~~~a~ 606 (789)
...+..+.+.|...-...+..|..+..
T Consensus 231 ~~~l~~i~~~il~~y~~~~~~L~~i~~ 257 (358)
T 2pk2_A 231 LELLDELTHEFLQILEKTPNRLKRIWN 257 (358)
T ss_dssp HHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccccchhc
Confidence 334444444444444444545554443
No 172
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=85.33 E-value=1.3 Score=47.45 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=14.5
Q ss_pred CCEEEEccCCChhhHH
Q 003887 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvl~~a~TGsGKTla 278 (789)
+.+|+.+|+|+|||+.
T Consensus 85 ~~iLL~GppGtGKT~l 100 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYL 100 (355)
T ss_dssp CCEEEECSTTSCHHHH
T ss_pred ceEEEECCCCCcHHHH
Confidence 5799999999999975
No 173
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=84.71 E-value=4.1 Score=40.29 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCChhhHHH
Q 003887 261 SGRDIIGIAKTGSGKTAAF 279 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla~ 279 (789)
.|.-+++.+++|+|||...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp TTSEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCcHHHHH
Confidence 3466889999999999853
No 174
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=84.63 E-value=3.6 Score=43.60 Aligned_cols=136 Identities=15% Similarity=0.179 Sum_probs=69.8
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHH
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~ 341 (789)
+.-+.+++++|+|||+. +..|..++.. ..+...|+=+++...+. .+.+..+....++.+..-..+......
T Consensus 129 g~vi~lvG~nGaGKTTl--l~~Lag~l~~-----~~g~V~l~g~D~~r~~a--~eql~~~~~~~gv~~v~q~~~~~p~~~ 199 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTT--IAKLANWLKN-----HGFSVVIAASDTFRAGA--IEQLEEHAKRIGVKVIKHSYGADPAAV 199 (328)
T ss_dssp SEEEEEECCTTSSHHHH--HHHHHHHHHH-----TTCCEEEEEECCSSTTH--HHHHHHHHHHTTCEEECCCTTCCHHHH
T ss_pred CeEEEEECCCCCCHHHH--HHHHHHHHHh-----cCCEEEEEeecccccch--HHHHHHHHHHcCceEEeccccCCHHHH
Confidence 45678899999999975 4445544331 22333444445432211 122333444345544332222221111
Q ss_pred HHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhc-cCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHH
Q 003887 342 FKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF-DLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKL 420 (789)
Q Consensus 342 ~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~-~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l 420 (789)
+.+.+... ....++++++|.+-++. +......+..+...+.++..++++.++....+...
T Consensus 200 -----------------v~e~l~~~--~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~ 260 (328)
T 3e70_C 200 -----------------AYDAIQHA--KARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQ 260 (328)
T ss_dssp -----------------HHHHHHHH--HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHH
T ss_pred -----------------HHHHHHHH--HhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHH
Confidence 01111100 01235678899887643 22334455556666677888888888877676666
Q ss_pred HHHHh
Q 003887 421 AREIL 425 (789)
Q Consensus 421 ~~~~l 425 (789)
++.+.
T Consensus 261 ~~~~~ 265 (328)
T 3e70_C 261 ARQFN 265 (328)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 175
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.63 E-value=9.2 Score=42.00 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=30.8
Q ss_pred CCCCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHH
Q 003887 222 RPVKTFEDCGFSTQLMHAISKQ---GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~---g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla 278 (789)
+|-.+|++.+--..+.+.|... .+..|--++...+ -.-+.+|+.+|+|+|||+.
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPGTGKTML 222 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTTTHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCCCCHHHH
Confidence 4557899987666655555432 0111111111111 1236799999999999975
No 176
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=84.28 E-value=4.2 Score=43.38 Aligned_cols=94 Identities=20% Similarity=0.255 Sum_probs=64.2
Q ss_pred EecCCCcchHHH----HHHhcCCCCCCCcEEEEecccccHHHHHHHHHHc-----CCceeeccCCCCHHHHHHHHHHhhc
Q 003887 448 HVIPSDAEKLPW----LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK-----GFKAAALHGDKDQASRMEILQKFKS 518 (789)
Q Consensus 448 ~~~~~~~~k~~~----L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~~~~~eR~~~l~~F~~ 518 (789)
...+....|-.. ++..+.......++||.|+++.-+..+++.+.+. ++.+..++|+.+....... +..
T Consensus 50 v~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~ 126 (391)
T 1xti_A 50 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKK 126 (391)
T ss_dssp EECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHH
T ss_pred EECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---Hhc
Confidence 344455566432 2333333333458999999999999988888765 7889999999987655443 455
Q ss_pred CCccEEEeeh-hhh-----ccCCCCCccEEEE
Q 003887 519 GVYHVLIATD-VAA-----RGLDIKSIKSVVN 544 (789)
Q Consensus 519 G~~~VLVaT~-v~~-----~GlDI~~v~~VI~ 544 (789)
+..+|+|+|. .+. ..+++..+.+||.
T Consensus 127 ~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 127 NCPHIVVGTPGRILALARNKSLNLKHIKHFIL 158 (391)
T ss_dssp SCCSEEEECHHHHHHHHHTTSSCCTTCSEEEE
T ss_pred CCCCEEEECHHHHHHHHHcCCccccccCEEEE
Confidence 7789999994 222 3466778888774
No 177
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.10 E-value=2.4 Score=44.82 Aligned_cols=39 Identities=18% Similarity=0.367 Sum_probs=24.8
Q ss_pred cceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEe
Q 003887 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 371 ~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~S 410 (789)
....++||||+|.|... ....+..++...+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 35789999999987532 2334556666655555555544
No 178
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=84.04 E-value=1.7 Score=48.89 Aligned_cols=43 Identities=14% Similarity=0.258 Sum_probs=26.3
Q ss_pred eeEEEEcccchhccCC----------ChHHHHHHHhhcCCCceEEEEeccCcH
Q 003887 373 VTYLVLDEADRMFDLG----------FEPQIRSIVGQIRPDRQTLLFSATMPR 415 (789)
Q Consensus 373 i~~lVlDEah~m~~~~----------f~~~i~~il~~~~~~~q~ll~SATl~~ 415 (789)
..+|+|||+|.|.... ....+..++..+.....++++.||-.+
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 3689999999886531 112344444544555667777777543
No 179
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.79 E-value=2.9 Score=43.30 Aligned_cols=38 Identities=18% Similarity=0.227 Sum_probs=23.0
Q ss_pred ceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEe
Q 003887 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 372 ~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~S 410 (789)
...+|||||+|.|.... ...+..++...+....+|+.|
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 47899999999875421 223445555544555555554
No 180
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=83.78 E-value=1 Score=50.14 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=14.1
Q ss_pred CCEEEEccCCChhhHH
Q 003887 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvl~~a~TGsGKTla 278 (789)
..+|+.+|+|+|||..
T Consensus 51 ~~vLL~GppGtGKTtl 66 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTL 66 (447)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCcHHHH
Confidence 3699999999999975
No 181
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.58 E-value=2.1 Score=48.45 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=25.2
Q ss_pred cceeEEEEcccchhccCC--ChHHHHHHHhhcCCCceEEEEeccC
Q 003887 371 SRVTYLVLDEADRMFDLG--FEPQIRSIVGQIRPDRQTLLFSATM 413 (789)
Q Consensus 371 ~~i~~lVlDEah~m~~~~--f~~~i~~il~~~~~~~q~ll~SATl 413 (789)
....+|||||+|.|.... ....+..++.. ....+|+++++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCC
Confidence 345789999999986532 22344444443 344567777664
No 182
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=83.24 E-value=2.6 Score=41.30 Aligned_cols=18 Identities=33% Similarity=0.305 Sum_probs=15.0
Q ss_pred cCCCEEEEccCCChhhHH
Q 003887 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla 278 (789)
.|.-+++.+++|+|||..
T Consensus 22 ~G~~~~i~G~~GsGKTtl 39 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIF 39 (235)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 356788999999999975
No 183
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=83.05 E-value=3.2 Score=46.50 Aligned_cols=52 Identities=19% Similarity=0.164 Sum_probs=38.7
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhh
Q 003887 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~ 323 (789)
.+....+.+-+|||||++ ++.+..- . +..+|||+|+..+|.|++++++.|..
T Consensus 13 ~~~~~~l~g~~gs~ka~~--~a~l~~~--------~-~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATL--VAEIAER--------H-AGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHH--HHHHHHH--------S-SSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHH--HHHHHHH--------h-CCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 345688899999999975 3222221 1 22379999999999999999999864
No 184
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=82.62 E-value=1.7 Score=46.32 Aligned_cols=114 Identities=16% Similarity=0.136 Sum_probs=53.9
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHH
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~ 341 (789)
|.=+++.|++|+|||.. ++-++.++.. .+..++|+..- .-..|+...+..... ++....+..|.-....
T Consensus 46 G~LiiIaG~pG~GKTt~-al~ia~~~a~-------~g~~Vl~fSlE-ms~~ql~~Rlls~~~--~v~~~~l~~g~Ls~~e 114 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSL-MMNMVLSALN-------DDRGVAVFSLE-MSAEQLALRALSDLT--SINMHDLESGRLDDDQ 114 (338)
T ss_dssp TCEEEEEECTTSCHHHH-HHHHHHHHHH-------TTCEEEEEESS-SCHHHHHHHHHHHHH--CCCHHHHHHTCCCHHH
T ss_pred CcEEEEEeCCCCCHHHH-HHHHHHHHHH-------cCCeEEEEeCC-CCHHHHHHHHHHHhh--CCCHHHHhcCCCCHHH
Confidence 45578899999999975 4444444433 24456776542 223344443322211 1111001111111222
Q ss_pred HHHHh------cCCcEEEe-----CHHHHHHHHhhccccccceeEEEEcccchhcc
Q 003887 342 FKELK------AGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMFD 386 (789)
Q Consensus 342 ~~~l~------~~~dIiV~-----Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~ 386 (789)
+..+. ....|.|. |+..|...+.+-......+++||||-.+.|..
T Consensus 115 ~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~ 170 (338)
T 4a1f_A 115 WENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSG 170 (338)
T ss_dssp HHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCT
T ss_pred HHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhcC
Confidence 22211 12345543 33444444432111111689999999998653
No 185
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=82.53 E-value=4 Score=41.08 Aligned_cols=71 Identities=24% Similarity=0.331 Sum_probs=53.1
Q ss_pred CCcEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeeh-hh----h--ccCCCCC
Q 003887 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA----A--RGLDIKS 538 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~----~--~GlDI~~ 538 (789)
..++||.++++.-+..+++.+... ++.+..++|+.....+...+ ....+|+|+|. .+ . ..+++..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 457999999999998888877664 78899999998876554433 24688999993 22 2 3567888
Q ss_pred ccEEEE
Q 003887 539 IKSVVN 544 (789)
Q Consensus 539 v~~VI~ 544 (789)
+++||.
T Consensus 187 ~~~lVi 192 (249)
T 3ber_A 187 LKYLVM 192 (249)
T ss_dssp CCEEEE
T ss_pred cCEEEE
Confidence 887775
No 186
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.29 E-value=1.2 Score=49.40 Aligned_cols=54 Identities=20% Similarity=0.294 Sum_probs=32.4
Q ss_pred CCCCCcccCCCCHHHHHHHHHcC---CCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHH
Q 003887 222 RPVKTFEDCGFSTQLMHAISKQG---YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~g---~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla 278 (789)
+|-.+|++.+--+.+.+.|+..= +..|--++.-. +---+.+|+.+|+|+|||+.
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHH
Confidence 45578999877777766665431 11111111111 01237899999999999975
No 187
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=82.25 E-value=3.7 Score=40.83 Aligned_cols=73 Identities=23% Similarity=0.301 Sum_probs=46.2
Q ss_pred CCCcEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeeh-----hhhc-cCCCCC
Q 003887 469 DDGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-----VAAR-GLDIKS 538 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-----v~~~-GlDI~~ 538 (789)
...++||.++++.-+..+++.+... ++.+..++|+..... .+..+..+...|+|+|. .+.+ .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 3458999999999999998888765 467778888766432 33455567789999993 3333 367777
Q ss_pred ccEEEE
Q 003887 539 IKSVVN 544 (789)
Q Consensus 539 v~~VI~ 544 (789)
+.+||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 887775
No 188
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=81.95 E-value=4.2 Score=42.27 Aligned_cols=16 Identities=25% Similarity=0.401 Sum_probs=14.6
Q ss_pred CCEEEEccCCChhhHH
Q 003887 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvl~~a~TGsGKTla 278 (789)
..+++.+++|+|||..
T Consensus 39 ~~vll~G~~GtGKT~l 54 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTL 54 (324)
T ss_dssp CCCEEECCTTCCCHHH
T ss_pred CcEEEECCCCCCHHHH
Confidence 6899999999999975
No 189
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=81.80 E-value=5.5 Score=41.62 Aligned_cols=40 Identities=10% Similarity=0.174 Sum_probs=23.6
Q ss_pred ccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEe
Q 003887 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~S 410 (789)
.....++||||||+|.... .+.+.+.+...++...+|+.+
T Consensus 80 ~~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEE
T ss_pred cCCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEE
Confidence 3568999999999975432 233445555444444444443
No 190
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=81.79 E-value=6.1 Score=37.96 Aligned_cols=72 Identities=18% Similarity=0.233 Sum_probs=51.8
Q ss_pred CCCcEEEEecccccHHHHHHHHHHc-----CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeeh-hh----hc-cCCCC
Q 003887 469 DDGDVLVFASKKTTVDEIESQLAQK-----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA----AR-GLDIK 537 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~----~~-GlDI~ 537 (789)
...++||.|+++.-+..+.+.+... ++.+..++|+....+.... + .+..+|+|+|. .+ .+ .+++.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~ 145 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVD 145 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCcc
Confidence 3458999999999999888888664 5788899999886544322 2 34678999994 22 22 35677
Q ss_pred CccEEEE
Q 003887 538 SIKSVVN 544 (789)
Q Consensus 538 ~v~~VI~ 544 (789)
.+++||.
T Consensus 146 ~~~~lVi 152 (206)
T 1vec_A 146 HVQMIVL 152 (206)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 7887775
No 191
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=81.71 E-value=1.5 Score=45.71 Aligned_cols=16 Identities=19% Similarity=0.025 Sum_probs=13.7
Q ss_pred CCEEEEccCCChhhHH
Q 003887 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvl~~a~TGsGKTla 278 (789)
+.+++.+|+|+|||..
T Consensus 37 ~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ 52 (293)
T ss_dssp SEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4688899999999974
No 192
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=81.44 E-value=4 Score=42.75 Aligned_cols=18 Identities=11% Similarity=0.003 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCChhhHH
Q 003887 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla 278 (789)
.++.+++.|+.|+|||..
T Consensus 30 ~~~~v~i~G~~G~GKT~L 47 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSL 47 (350)
T ss_dssp HCSEEEEECCTTSSHHHH
T ss_pred cCCeEEEECCCcCCHHHH
Confidence 467889999999999974
No 193
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=81.41 E-value=2.1 Score=44.27 Aligned_cols=19 Identities=26% Similarity=0.414 Sum_probs=15.7
Q ss_pred cCCCEEEEccCCChhhHHH
Q 003887 261 SGRDIIGIAKTGSGKTAAF 279 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla~ 279 (789)
.|.-+++++++|+|||...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFV 52 (296)
T ss_dssp TTCEEEEEESTTSSHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHH
Confidence 4567889999999999753
No 194
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=81.18 E-value=3 Score=50.27 Aligned_cols=16 Identities=38% Similarity=0.499 Sum_probs=14.4
Q ss_pred CCEEEEccCCChhhHH
Q 003887 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvl~~a~TGsGKTla 278 (789)
.++++++++|+|||..
T Consensus 192 ~~vlL~G~pG~GKT~l 207 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAI 207 (854)
T ss_dssp CCCEEEECTTSCHHHH
T ss_pred CceEEEcCCCCCHHHH
Confidence 4799999999999975
No 195
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=81.04 E-value=2.7 Score=40.31 Aligned_cols=71 Identities=17% Similarity=0.264 Sum_probs=43.3
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHH---HHHHhc-CCcEEEeCHHHHHHHHhhccccccce
Q 003887 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ---FKELKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (789)
Q Consensus 298 gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~---~~~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i 373 (789)
+.++||.|+++..+..+.+.+... ++.+..++|+.+..+. +..+.. ...|+|||. .+. ..+++..+
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~Gldi~~~ 115 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA-RGLDISNV 115 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCCSB
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----hhh-cCCCcccC
Confidence 566999999999998887777664 7889999998765433 233333 478999993 222 23456777
Q ss_pred eEEEE
Q 003887 374 TYLVL 378 (789)
Q Consensus 374 ~~lVl 378 (789)
.+||.
T Consensus 116 ~~VI~ 120 (185)
T 2jgn_A 116 KHVIN 120 (185)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 77776
No 196
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=80.88 E-value=5.3 Score=41.58 Aligned_cols=18 Identities=33% Similarity=0.521 Sum_probs=15.0
Q ss_pred cCCCEEEEccCCChhhHH
Q 003887 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla 278 (789)
.++-+++++++|+|||..
T Consensus 104 ~g~vi~lvG~~GsGKTTl 121 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTT 121 (296)
T ss_dssp CSSEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 356688899999999975
No 197
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=80.63 E-value=1.8 Score=49.04 Aligned_cols=59 Identities=19% Similarity=0.351 Sum_probs=55.3
Q ss_pred CCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeeh
Q 003887 470 DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD 528 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~ 528 (789)
.+.+||.++++.-+......|...++.+..+|+..+..++..++..+..|..+||++|.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 47899999999999999999999999999999999999999999999999999999994
No 198
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=80.39 E-value=5.3 Score=39.80 Aligned_cols=71 Identities=15% Similarity=0.223 Sum_probs=53.3
Q ss_pred CCcEEEEecccccHHHHHHHHHH----cCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeeh-----hhh-ccCCCCCc
Q 003887 470 DGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-----VAA-RGLDIKSI 539 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~----~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-----v~~-~GlDI~~v 539 (789)
..++||.|++++-+..+.+.+.. .++.+..++|+.+.......+.. ..+|+|+|. .+. ..+++..+
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 45799999999998888777655 48899999999988766554432 478999994 222 34678888
Q ss_pred cEEEE
Q 003887 540 KSVVN 544 (789)
Q Consensus 540 ~~VI~ 544 (789)
++||.
T Consensus 178 ~~lVi 182 (242)
T 3fe2_A 178 TYLVL 182 (242)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 88874
No 199
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=79.73 E-value=9.8 Score=39.44 Aligned_cols=52 Identities=19% Similarity=0.295 Sum_probs=27.9
Q ss_pred cceeEEEEcccchhc-cCCChHHHHHHHhhcCCCceEEEEeccCcHHHHHHHH
Q 003887 371 SRVTYLVLDEADRMF-DLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAR 422 (789)
Q Consensus 371 ~~i~~lVlDEah~m~-~~~f~~~i~~il~~~~~~~q~ll~SATl~~~v~~l~~ 422 (789)
..+++||||++=.+. +......+..+...+.++.-++.+.++...+....++
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~~ 231 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVAR 231 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHHH
Confidence 467899999994432 2112233444445555555555667664444333333
No 200
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=79.65 E-value=12 Score=42.33 Aligned_cols=78 Identities=14% Similarity=0.164 Sum_probs=56.5
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHH---HHh-cCCcEEEeCHHHHHHHHhhccccccc
Q 003887 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELK-AGCEIVIATPGRLIDMLKMKALTMSR 372 (789)
Q Consensus 297 ~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~---~l~-~~~dIiV~Tp~~L~~~l~~~~~~l~~ 372 (789)
.+.++||.|+|+.-|..+++.+.+... .++.+..++|+.+...... .+. ...+|+|||. .+ ...+++..
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~-~~GiDip~ 410 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VG-ARGMDFPN 410 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GG-TSSCCCTT
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hh-hcCCCccc
Confidence 356799999999999999888887653 2678889999987655433 233 3589999994 33 34556778
Q ss_pred eeEEEEccc
Q 003887 373 VTYLVLDEA 381 (789)
Q Consensus 373 i~~lVlDEa 381 (789)
+++||.-..
T Consensus 411 v~~VI~~~~ 419 (563)
T 3i5x_A 411 VHEVLQIGV 419 (563)
T ss_dssp CCEEEEESC
T ss_pred CCEEEEECC
Confidence 888875543
No 201
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=79.39 E-value=16 Score=38.05 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=13.4
Q ss_pred CCEEEEccCCChhhHH
Q 003887 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvl~~a~TGsGKTla 278 (789)
+-+++++++|+|||+.
T Consensus 105 ~vi~ivG~~GsGKTTl 120 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTS 120 (306)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEEcCCCChHHHH
Confidence 4577899999999975
No 202
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=79.03 E-value=11 Score=32.33 Aligned_cols=51 Identities=27% Similarity=0.459 Sum_probs=42.5
Q ss_pred EEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccE
Q 003887 473 VLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHV 523 (789)
Q Consensus 473 vLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~V 523 (789)
.+||...-+.+..+...++..|..+++|+++.+...|.+-++.|...-+.|
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdv 55 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDV 55 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCce
Confidence 356777777788888889999999999999999999999999997654443
No 203
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=78.97 E-value=16 Score=39.61 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=18.4
Q ss_pred HHHHHHc-----CCCEEEEccCCChhhHHH
Q 003887 255 ALPIILS-----GRDIIGIAKTGSGKTAAF 279 (789)
Q Consensus 255 ai~~il~-----grdvl~~a~TGsGKTla~ 279 (789)
.+..++. |.-++++++.|+|||...
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl 195 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLC 195 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHH
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHH
Confidence 3555553 356889999999999753
No 204
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=78.40 E-value=3.6 Score=42.93 Aligned_cols=71 Identities=18% Similarity=0.297 Sum_probs=51.5
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHH---hc-CCcEEEeCHHHHHHHHhhccccccce
Q 003887 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL---KA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (789)
Q Consensus 298 gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l---~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i 373 (789)
+..+||.|+|+.-+..+++.+... ++.+..++|+.+..++...+ .. ..+|+||| +.+ ...+++..+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT-----~va-~~Gidi~~v 97 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-----DVA-ARGLDIPQV 97 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-----STT-TCSTTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe-----chh-hcCccccce
Confidence 456899999999988877766554 78999999998876554333 33 47899999 233 234567788
Q ss_pred eEEEE
Q 003887 374 TYLVL 378 (789)
Q Consensus 374 ~~lVl 378 (789)
.+||.
T Consensus 98 ~~VI~ 102 (300)
T 3i32_A 98 DLVVH 102 (300)
T ss_dssp SEEEE
T ss_pred eEEEE
Confidence 88874
No 205
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=78.38 E-value=6 Score=39.09 Aligned_cols=70 Identities=17% Similarity=0.230 Sum_probs=49.6
Q ss_pred CCcEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeeh-hh----hc--cCCCCC
Q 003887 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA----AR--GLDIKS 538 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~----~~--GlDI~~ 538 (789)
..++||.++++.-+..+++.+... ++.+..++|+.+.......+ +..+|+|+|. .+ .+ .+++..
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~~ 171 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHATD 171 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCccccc
Confidence 458999999999999998888775 47889999988765443333 3678999994 22 12 366777
Q ss_pred ccEEEE
Q 003887 539 IKSVVN 544 (789)
Q Consensus 539 v~~VI~ 544 (789)
+++||.
T Consensus 172 ~~~lVi 177 (236)
T 2pl3_A 172 LQMLVL 177 (236)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 777764
No 206
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=78.34 E-value=7.6 Score=41.76 Aligned_cols=72 Identities=17% Similarity=0.242 Sum_probs=53.3
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHH---HHhc-CCcEEEeCHHHHHHHHhhccccccc
Q 003887 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELKA-GCEIVIATPGRLIDMLKMKALTMSR 372 (789)
Q Consensus 297 ~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~---~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~ 372 (789)
.+.++||.|+++..+..+++.+.+. ++.+..++|+.+..+... .+.. ...|+|||. .+. ..+++..
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~-~Gidip~ 344 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA-RGLDISN 344 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHH-TTSCCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh-cCCCccc
Confidence 4667999999999999888777764 788999999988654433 2332 478999994 333 3456778
Q ss_pred eeEEEE
Q 003887 373 VTYLVL 378 (789)
Q Consensus 373 i~~lVl 378 (789)
+++||.
T Consensus 345 v~~Vi~ 350 (417)
T 2i4i_A 345 VKHVIN 350 (417)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888875
No 207
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=77.55 E-value=15 Score=41.85 Aligned_cols=78 Identities=14% Similarity=0.164 Sum_probs=56.5
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHH---HHh-cCCcEEEeCHHHHHHHHhhccccccc
Q 003887 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELK-AGCEIVIATPGRLIDMLKMKALTMSR 372 (789)
Q Consensus 297 ~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~---~l~-~~~dIiV~Tp~~L~~~l~~~~~~l~~ 372 (789)
.+.++||.|+|+..|..+++.+.+... .++.+..++|+.+..+... .+. ....|+|||. .+ ...+++..
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~-~~GiDip~ 359 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VG-ARGMDFPN 359 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GG-TSSCCCTT
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hh-hcCCCccc
Confidence 356799999999999999988887653 2678889999987655433 233 3588999993 33 23556778
Q ss_pred eeEEEEccc
Q 003887 373 VTYLVLDEA 381 (789)
Q Consensus 373 i~~lVlDEa 381 (789)
+++||.-..
T Consensus 360 v~~VI~~~~ 368 (579)
T 3sqw_A 360 VHEVLQIGV 368 (579)
T ss_dssp CCEEEEESC
T ss_pred CCEEEEcCC
Confidence 888886544
No 208
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=77.30 E-value=9.1 Score=36.63 Aligned_cols=71 Identities=20% Similarity=0.215 Sum_probs=52.1
Q ss_pred CCcEEEEecccccHHHHHHHHHHc--CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeeh-h----hh-ccCCCCCccE
Q 003887 470 DGDVLVFASKKTTVDEIESQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-V----AA-RGLDIKSIKS 541 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~--g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v----~~-~GlDI~~v~~ 541 (789)
..++||.|+++.-+..+++.+... .+.+..++|+.........+. ...+|+|+|. . +. ..+++..+++
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 147 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVEV 147 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhceE
Confidence 458999999999999999999876 467888999887654443332 2478999994 2 22 3467778888
Q ss_pred EEE
Q 003887 542 VVN 544 (789)
Q Consensus 542 VI~ 544 (789)
||.
T Consensus 148 iVi 150 (207)
T 2gxq_A 148 AVL 150 (207)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 209
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=77.29 E-value=7.2 Score=38.03 Aligned_cols=93 Identities=15% Similarity=0.160 Sum_probs=55.8
Q ss_pred EEecCCCcchHHH-H---HHhcCCCCCCCcEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhc
Q 003887 447 VHVIPSDAEKLPW-L---LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKS 518 (789)
Q Consensus 447 ~~~~~~~~~k~~~-L---~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~ 518 (789)
+...+....|-.. + +..+.......++||.++++.-+..+.+.+... ++.+..++|+.+..+.... +.
T Consensus 55 lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~- 130 (224)
T 1qde_A 55 LAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR- 130 (224)
T ss_dssp EEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT-
T ss_pred EEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC-
Confidence 4445556666543 2 333333334568999999999999888887764 6788899998876544332 22
Q ss_pred CCccEEEeeh-hh-----hccCCCCCccEEEE
Q 003887 519 GVYHVLIATD-VA-----ARGLDIKSIKSVVN 544 (789)
Q Consensus 519 G~~~VLVaT~-v~-----~~GlDI~~v~~VI~ 544 (789)
..+|+|+|. .+ ...+++..+.+||.
T Consensus 131 -~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 131 -DAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp -TCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred -CCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 378999994 22 23566777777774
No 210
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=76.23 E-value=7.2 Score=40.98 Aligned_cols=18 Identities=28% Similarity=0.126 Sum_probs=15.0
Q ss_pred CCCEEEEccCCChhhHHH
Q 003887 262 GRDIIGIAKTGSGKTAAF 279 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~ 279 (789)
|.-+++.+++|+|||...
T Consensus 107 G~i~~i~G~~GsGKT~la 124 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLC 124 (324)
T ss_dssp TSEEEEEESTTSSHHHHH
T ss_pred CcEEEEECCCCCCHhHHH
Confidence 466889999999999753
No 211
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=76.17 E-value=7.3 Score=39.81 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=17.4
Q ss_pred HHcCCCEEEEccCCChhhHHHH
Q 003887 259 ILSGRDIIGIAKTGSGKTAAFV 280 (789)
Q Consensus 259 il~grdvl~~a~TGsGKTla~l 280 (789)
+..|.-+++.+++|+|||+..+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~ 48 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLAL 48 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHH
Confidence 3466778999999999998533
No 212
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=75.96 E-value=4.1 Score=50.31 Aligned_cols=74 Identities=11% Similarity=0.221 Sum_probs=57.6
Q ss_pred CCCcEEEEecccccHHHHHHHHHHc----CC----ceeeccCCCCHHHHHHHHHHhhcCCccEEEeeh-hhhccCC-CCC
Q 003887 469 DDGDVLVFASKKTTVDEIESQLAQK----GF----KAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAARGLD-IKS 538 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~----g~----~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~~~GlD-I~~ 538 (789)
...++||.++++.-+..+++.|... ++ .+..+||+.+..++...++.+.+ .+|||+|. .+..-+. +..
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 3468999999999999888888753 55 78999999999888888888877 89999994 3333222 556
Q ss_pred ccEEEE
Q 003887 539 IKSVVN 544 (789)
Q Consensus 539 v~~VI~ 544 (789)
+++||.
T Consensus 176 l~~lVi 181 (1054)
T 1gku_B 176 FDFIFV 181 (1054)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777774
No 213
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=75.82 E-value=4.4 Score=39.82 Aligned_cols=72 Identities=18% Similarity=0.353 Sum_probs=48.8
Q ss_pred CCCcEEEEecccccHHHHHHHHHHc---CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeeh-hhh-----ccCCCCCc
Q 003887 469 DDGDVLVFASKKTTVDEIESQLAQK---GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA-----RGLDIKSI 539 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~---g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~~-----~GlDI~~v 539 (789)
...++||.+++++-+..+++.+... ++.+..++|+.+...+...+ .. ..+|+|+|. .+. ..+++..+
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---SK-GVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---HS-CCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---cC-CCCEEEECHHHHHHHHHcCCcCcccc
Confidence 3457999999999999999998874 67888999988765443332 33 478999994 222 35678888
Q ss_pred cEEEE
Q 003887 540 KSVVN 544 (789)
Q Consensus 540 ~~VI~ 544 (789)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 88775
No 214
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=75.70 E-value=1.6 Score=43.52 Aligned_cols=43 Identities=9% Similarity=0.024 Sum_probs=26.0
Q ss_pred cceeEEEEcccchhcc-----CCChHHHHHHHhhcCCCceEEEEeccC
Q 003887 371 SRVTYLVLDEADRMFD-----LGFEPQIRSIVGQIRPDRQTLLFSATM 413 (789)
Q Consensus 371 ~~i~~lVlDEah~m~~-----~~f~~~i~~il~~~~~~~q~ll~SATl 413 (789)
...++|||||.-.+++ ......+..++..++..-.+++++.-.
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~ 181 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEA 181 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECC
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4678899999998775 333334666666554333345554443
No 215
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=74.51 E-value=3.7 Score=40.16 Aligned_cols=72 Identities=18% Similarity=0.257 Sum_probs=49.5
Q ss_pred CCCcEEEEecccccHHHHHHHHHHc--------CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeeh-----hhhc-cC
Q 003887 469 DDGDVLVFASKKTTVDEIESQLAQK--------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-----VAAR-GL 534 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~--------g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-----v~~~-Gl 534 (789)
...++||.|+++.-+..+++.+.+. ++.+..++|+.+..+.. ..+ ....+|+|+|. .+.. .+
T Consensus 71 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~Iiv~Tp~~l~~~l~~~~~ 146 (219)
T 1q0u_A 71 AEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKL-NVQPHIVIGTPGRINDFIREQAL 146 (219)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCC-SSCCSEEEECHHHHHHHHHTTCC
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHc-CCCCCEEEeCHHHHHHHHHcCCC
Confidence 3458999999999998888877654 57788889987643321 111 23578999994 2222 45
Q ss_pred CCCCccEEEE
Q 003887 535 DIKSIKSVVN 544 (789)
Q Consensus 535 DI~~v~~VI~ 544 (789)
++..+++||.
T Consensus 147 ~~~~~~~lVi 156 (219)
T 1q0u_A 147 DVHTAHILVV 156 (219)
T ss_dssp CGGGCCEEEE
T ss_pred CcCcceEEEE
Confidence 6777777764
No 216
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=74.40 E-value=2.7 Score=54.79 Aligned_cols=44 Identities=25% Similarity=0.231 Sum_probs=30.4
Q ss_pred HHHHHc------CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCc
Q 003887 256 LPIILS------GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (789)
Q Consensus 256 i~~il~------grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PT 307 (789)
+..++. ++.+++++|+|+|||..++..+.... ..+.+++++..-
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~--------~~G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ--------REGKTCAFIDAE 1464 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH--------TTTCCEEEECTT
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH--------HcCCcEEEEEcc
Confidence 666665 68899999999999986444333322 235667887665
No 217
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=74.28 E-value=7.3 Score=42.38 Aligned_cols=92 Identities=21% Similarity=0.237 Sum_probs=62.7
Q ss_pred EecCCCcchHHHHHHhcCCC--CCCCcEEEEecccccHHHHHHHHHHc-CC---ceeeccCCCCHHHHHHHHHHhhcCCc
Q 003887 448 HVIPSDAEKLPWLLEKLPGM--IDDGDVLVFASKKTTVDEIESQLAQK-GF---KAAALHGDKDQASRMEILQKFKSGVY 521 (789)
Q Consensus 448 ~~~~~~~~k~~~L~~~L~~~--~~~~kvLVF~~s~~~a~~l~~~L~~~-g~---~v~~lhg~~~~~eR~~~l~~F~~G~~ 521 (789)
...+....|-...+..+... ....++||.|+++.-+....+.|.+. +. .+..+||+....++..... ..
T Consensus 28 l~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~ 102 (494)
T 1wp9_A 28 IVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RA 102 (494)
T ss_dssp EECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HC
T ss_pred EEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CC
Confidence 33445556654433332222 24679999999999999888888775 55 8999999999887655443 36
Q ss_pred cEEEeeh-hhhc-----cCCCCCccEEEE
Q 003887 522 HVLIATD-VAAR-----GLDIKSIKSVVN 544 (789)
Q Consensus 522 ~VLVaT~-v~~~-----GlDI~~v~~VI~ 544 (789)
+|+|+|. .+.. .+.+..+++||.
T Consensus 103 ~ivv~T~~~l~~~~~~~~~~~~~~~~vIi 131 (494)
T 1wp9_A 103 KVIVATPQTIENDLLAGRISLEDVSLIVF 131 (494)
T ss_dssp SEEEECHHHHHHHHHTTSCCTTSCSEEEE
T ss_pred CEEEecHHHHHHHHhcCCcchhhceEEEE
Confidence 8999993 3332 466777787775
No 218
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=74.21 E-value=3.3 Score=47.11 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=19.1
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHh
Q 003887 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla~llp~l~~l~ 288 (789)
.+..+++.+|+|+|||.. +-++...+
T Consensus 107 ~g~~vll~Gp~GtGKTtl--ar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSL--AKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHH--HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHHhc
Confidence 467899999999999974 33444443
No 219
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=74.12 E-value=17 Score=34.91 Aligned_cols=18 Identities=28% Similarity=0.080 Sum_probs=14.9
Q ss_pred CCCEEEEccCCChhhHHH
Q 003887 262 GRDIIGIAKTGSGKTAAF 279 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~ 279 (789)
|.-+++.+++|+|||...
T Consensus 20 G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp TSEEEEECSTTSSHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 456789999999999753
No 220
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=73.35 E-value=14 Score=39.01 Aligned_cols=76 Identities=18% Similarity=0.304 Sum_probs=55.6
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHH---HHhc-CCcEEEeCHHHHHHHHhhccccccc
Q 003887 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELKA-GCEIVIATPGRLIDMLKMKALTMSR 372 (789)
Q Consensus 297 ~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~---~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~ 372 (789)
.+.++||.|+++.-|..+++.++.. ++.+..++|+.+..++.. .+.. ...|+|||. .+ ...+++..
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidip~ 311 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VL-ARGIDIPT 311 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GG-SSSCCCTT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hh-hcCCCccc
Confidence 3567999999999998888777765 788899999887655433 3333 478999993 22 34567888
Q ss_pred eeEEEEcccc
Q 003887 373 VTYLVLDEAD 382 (789)
Q Consensus 373 i~~lVlDEah 382 (789)
+++||.-...
T Consensus 312 ~~~Vi~~~~p 321 (395)
T 3pey_A 312 VSMVVNYDLP 321 (395)
T ss_dssp EEEEEESSCC
T ss_pred CCEEEEcCCC
Confidence 9998875554
No 221
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=73.19 E-value=8.1 Score=45.73 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=15.0
Q ss_pred CCCEEEEccCCChhhHH
Q 003887 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvl~~a~TGsGKTla 278 (789)
..++++++++|+|||..
T Consensus 207 ~~~vlL~G~~GtGKT~l 223 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAI 223 (758)
T ss_dssp SCEEEEECCTTSSHHHH
T ss_pred CCCeEEEcCCCCCHHHH
Confidence 46799999999999975
No 222
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=73.14 E-value=19 Score=39.38 Aligned_cols=17 Identities=29% Similarity=0.274 Sum_probs=13.7
Q ss_pred CCCEEEEccCCChhhHH
Q 003887 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvl~~a~TGsGKTla 278 (789)
++-++++++.|+|||+.
T Consensus 98 ~~vi~i~G~~GsGKTT~ 114 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTT 114 (425)
T ss_dssp SEEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34577789999999975
No 223
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=73.04 E-value=8.5 Score=41.19 Aligned_cols=71 Identities=17% Similarity=0.218 Sum_probs=53.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHH---HHhc-CCcEEEeCHHHHHHHHhhccccccce
Q 003887 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (789)
Q Consensus 298 gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~---~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i 373 (789)
+.++||.|+++..|..+++.+.+. ++.+..++|+.+..+... .+.. ...|+|||. .+ ...+++..+
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidip~~ 335 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VC-ARGIDVEQV 335 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GG-TSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----cc-ccCCCccCC
Confidence 457999999999999888887765 788899999987665433 2333 478999993 22 345678889
Q ss_pred eEEEE
Q 003887 374 TYLVL 378 (789)
Q Consensus 374 ~~lVl 378 (789)
++||.
T Consensus 336 ~~Vi~ 340 (412)
T 3fht_A 336 SVVIN 340 (412)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 98884
No 224
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=72.67 E-value=27 Score=40.60 Aligned_cols=78 Identities=15% Similarity=0.326 Sum_probs=58.0
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHH---Hhc-CCcEEEeCHHHHHHHHhhccccccc
Q 003887 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LKA-GCEIVIATPGRLIDMLKMKALTMSR 372 (789)
Q Consensus 297 ~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~---l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~ 372 (789)
.+.++||.|+|+..|..+.+.+... ++++.+++|+.+..+.... +.. ..+|+|||. .+ ...+.+..
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l-~~GlDip~ 513 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LL-REGLDIPE 513 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CC-STTCCCTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hh-hCCcccCC
Confidence 3568999999999998887777665 7888888988765544333 333 489999993 22 34567888
Q ss_pred eeEEEEcccchh
Q 003887 373 VTYLVLDEADRM 384 (789)
Q Consensus 373 i~~lVlDEah~m 384 (789)
+++||+=+++..
T Consensus 514 v~lVi~~d~d~~ 525 (661)
T 2d7d_A 514 VSLVAILDADKE 525 (661)
T ss_dssp EEEEEETTTTCC
T ss_pred CCEEEEeCcccc
Confidence 999999998763
No 225
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=72.30 E-value=23 Score=35.16 Aligned_cols=71 Identities=18% Similarity=0.213 Sum_probs=50.8
Q ss_pred CCcEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeeh-hhh-----ccCCCCCc
Q 003887 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA-----RGLDIKSI 539 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~~-----~GlDI~~v 539 (789)
..++||.|++++-+..+.+.+... ++.+..++|+.+.......+ ....+|+|+|. .+. ..+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 358999999999999888887654 56788899988765443322 24578999994 232 23577778
Q ss_pred cEEEE
Q 003887 540 KSVVN 544 (789)
Q Consensus 540 ~~VI~ 544 (789)
++||.
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 87774
No 226
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=71.46 E-value=3.6 Score=48.91 Aligned_cols=54 Identities=20% Similarity=0.266 Sum_probs=31.9
Q ss_pred CCCCCcccCCCCHHHHHHHHHcC---CCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHH
Q 003887 222 RPVKTFEDCGFSTQLMHAISKQG---YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~g---~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla 278 (789)
.|-.+|.+++.-..+.+.|...= ...|.-++... +...+.+|+.+|+|+|||+.
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~l 527 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHH
Confidence 34567888887777777776531 11111111000 01225799999999999964
No 227
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=71.43 E-value=11 Score=42.10 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=16.6
Q ss_pred CEEEEccCCChhhHHHHHHHHHHHh
Q 003887 264 DIIGIAKTGSGKTAAFVLPMIVHIM 288 (789)
Q Consensus 264 dvl~~a~TGsGKTla~llp~l~~l~ 288 (789)
-+++++++|+|||+. +-+|..++
T Consensus 295 VI~LVGpNGSGKTTL--l~~LAgll 317 (503)
T 2yhs_A 295 VILMVGVNGVGKTTT--IGKLARQF 317 (503)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHH
T ss_pred EEEEECCCcccHHHH--HHHHHHHh
Confidence 467899999999975 44455443
No 228
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=71.40 E-value=7 Score=40.92 Aligned_cols=50 Identities=14% Similarity=0.026 Sum_probs=29.0
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHH
Q 003887 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETK 319 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~ 319 (789)
.|.-++++|++|+|||.. ++-+..++..+ +..++++.-- .-..|+...+.
T Consensus 67 ~G~l~li~G~pG~GKTtl-~l~ia~~~a~~-------g~~vl~~slE-~s~~~l~~R~~ 116 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAF-ALKQAKNMSDN-------DDVVNLHSLE-MGKKENIKRLI 116 (315)
T ss_dssp TTCEEEEECCTTSSHHHH-HHHHHHHHHTT-------TCEEEEEESS-SCHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHH-HHHHHHHHHHc-------CCeEEEEECC-CCHHHHHHHHH
Confidence 345688999999999974 44444444332 2457776532 33334444443
No 229
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=71.33 E-value=3.4 Score=41.03 Aligned_cols=18 Identities=33% Similarity=0.475 Sum_probs=14.9
Q ss_pred CCCEEEEccCCChhhHHH
Q 003887 262 GRDIIGIAKTGSGKTAAF 279 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~ 279 (789)
|.-++++|++|+|||...
T Consensus 30 G~l~~i~G~pG~GKT~l~ 47 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp TCEEEEECCTTSSHHHHH
T ss_pred CeEEEEEeCCCCCHHHHH
Confidence 456889999999999753
No 230
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=70.15 E-value=2.9 Score=38.28 Aligned_cols=19 Identities=11% Similarity=0.184 Sum_probs=16.5
Q ss_pred HcCCCEEEEccCCChhhHH
Q 003887 260 LSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 260 l~grdvl~~a~TGsGKTla 278 (789)
....++++.+++|+|||..
T Consensus 22 ~~~~~vll~G~~GtGKt~l 40 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTG 40 (145)
T ss_dssp TCCSCEEEESSTTSSHHHH
T ss_pred CCCCCEEEECCCCCCHHHH
Confidence 4667899999999999975
No 231
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=70.09 E-value=19 Score=36.32 Aligned_cols=71 Identities=14% Similarity=0.247 Sum_probs=52.2
Q ss_pred CCcEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeeh-----hhh--ccCCCCC
Q 003887 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-----VAA--RGLDIKS 538 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-----v~~--~GlDI~~ 538 (789)
..++||.++++.-+..+++.|++. +..+..++|+......... +..+ .+|+|+|. .+. .++++..
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~ 201 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYKN 201 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCccccc
Confidence 457999999999999988888764 5678889998886554433 3344 88999993 222 2477888
Q ss_pred ccEEEE
Q 003887 539 IKSVVN 544 (789)
Q Consensus 539 v~~VI~ 544 (789)
+.+||.
T Consensus 202 l~~lVi 207 (262)
T 3ly5_A 202 LQCLVI 207 (262)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888775
No 232
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=70.08 E-value=25 Score=39.43 Aligned_cols=15 Identities=40% Similarity=0.494 Sum_probs=13.2
Q ss_pred CEEEEccCCChhhHH
Q 003887 264 DIIGIAKTGSGKTAA 278 (789)
Q Consensus 264 dvl~~a~TGsGKTla 278 (789)
.+++++.+|+|||..
T Consensus 103 vI~ivG~~GvGKTTl 117 (504)
T 2j37_W 103 VIMFVGLQGSGKTTT 117 (504)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 577889999999986
No 233
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=68.94 E-value=77 Score=36.70 Aligned_cols=77 Identities=16% Similarity=0.258 Sum_probs=56.8
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHH---Hhc-CCcEEEeCHHHHHHHHhhccccccc
Q 003887 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LKA-GCEIVIATPGRLIDMLKMKALTMSR 372 (789)
Q Consensus 297 ~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~---l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~ 372 (789)
.+.++||.|+|+..|..+.+.+... ++.+.+++++.+..+.... +.. ..+|+|||. .+ ...+++..
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l-~~GlDip~ 507 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LL-REGLDIPE 507 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CC-CTTCCCTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hh-hcCccCCC
Confidence 3568999999999998887777665 7888888888765544333 333 479999992 22 34556888
Q ss_pred eeEEEEcccch
Q 003887 373 VTYLVLDEADR 383 (789)
Q Consensus 373 i~~lVlDEah~ 383 (789)
+++||+=+++.
T Consensus 508 v~lVI~~d~d~ 518 (664)
T 1c4o_A 508 VSLVAILDADK 518 (664)
T ss_dssp EEEEEETTTTS
T ss_pred CCEEEEeCCcc
Confidence 99999888875
No 234
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=68.69 E-value=16 Score=38.63 Aligned_cols=92 Identities=16% Similarity=0.152 Sum_probs=61.5
Q ss_pred EecCCCcchHHH-H---HHhcCCCCCCCcEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcC
Q 003887 448 HVIPSDAEKLPW-L---LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSG 519 (789)
Q Consensus 448 ~~~~~~~~k~~~-L---~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G 519 (789)
...+....|-.. + +..+.......++||.|+++.-+..+++.+... ++.+..++|+....+....+.
T Consensus 63 v~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----- 137 (394)
T 1fuu_A 63 AQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR----- 137 (394)
T ss_dssp ECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----
T ss_pred EECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----
Confidence 344455556533 2 333443334569999999999998888877653 678999999998776555444
Q ss_pred CccEEEeeh-hhh-----ccCCCCCccEEEE
Q 003887 520 VYHVLIATD-VAA-----RGLDIKSIKSVVN 544 (789)
Q Consensus 520 ~~~VLVaT~-v~~-----~GlDI~~v~~VI~ 544 (789)
..+|+|+|. .+. ..+.+..+.+||.
T Consensus 138 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIi 168 (394)
T 1fuu_A 138 DAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 168 (394)
T ss_dssp HCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 467999993 221 2455667777774
No 235
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=68.66 E-value=9.8 Score=39.81 Aligned_cols=74 Identities=16% Similarity=0.297 Sum_probs=52.3
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHH---HHhc-CCcEEEeCHHHHHHHHhhccccccc
Q 003887 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELKA-GCEIVIATPGRLIDMLKMKALTMSR 372 (789)
Q Consensus 297 ~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~---~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~ 372 (789)
.+.++||.|+++.-+..+++.+++. ++.+..++|+.+..+... .+.. ...|+|||. .+. ..+++..
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~-~Gid~~~ 306 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMS-RGIDVND 306 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THH-HHCCCSC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhh-cCCCccc
Confidence 3566899999999999888877765 788899999887654432 2332 478999993 222 2446777
Q ss_pred eeEEEEcc
Q 003887 373 VTYLVLDE 380 (789)
Q Consensus 373 i~~lVlDE 380 (789)
+++||.-.
T Consensus 307 ~~~Vi~~~ 314 (367)
T 1hv8_A 307 LNCVINYH 314 (367)
T ss_dssp CSEEEESS
T ss_pred CCEEEEec
Confidence 88787543
No 236
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=71.67 E-value=1 Score=42.58 Aligned_cols=72 Identities=15% Similarity=0.209 Sum_probs=48.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHH---HHhc-CCcEEEeCHHHHHHHHhhccccccce
Q 003887 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (789)
Q Consensus 298 gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~---~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i 373 (789)
+.++||.|+++..+..+.+.+... ++.+..++|+.+..+... .+.. ...|+|||. .+ ...+++..+
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~-~~Gid~~~~ 99 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VA-ARGIDIPDV 99 (170)
Confidence 456899999999998887777665 778888898876544322 2222 467999992 22 123356666
Q ss_pred eEEEEc
Q 003887 374 TYLVLD 379 (789)
Q Consensus 374 ~~lVlD 379 (789)
++||.-
T Consensus 100 ~~Vi~~ 105 (170)
T 2yjt_D 100 SHVFNF 105 (170)
Confidence 666653
No 237
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.91 E-value=2.2 Score=47.01 Aligned_cols=55 Identities=15% Similarity=0.303 Sum_probs=35.0
Q ss_pred CCCCCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHH
Q 003887 221 PRPVKTFEDCGFSTQLMHAISKQ---GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 221 P~pi~sf~~~~l~~~l~~~l~~~---g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla 278 (789)
.+|-.+|++.+--+...+.|... .+..|.-++...++ .-+.+|+.+|+|+|||+.
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLL 231 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHH
Confidence 45778899998777777766542 11222222222211 236899999999999975
No 238
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=67.46 E-value=21 Score=38.07 Aligned_cols=94 Identities=20% Similarity=0.219 Sum_probs=61.7
Q ss_pred EEecCCCcchHHH-H---HHhcCCCCCCCcEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhc
Q 003887 447 VHVIPSDAEKLPW-L---LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKS 518 (789)
Q Consensus 447 ~~~~~~~~~k~~~-L---~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~ 518 (789)
+...+....|-.. + +..+.......++||.|+++.-+..+++.+... ++.+..++|+....+....+. .
T Consensus 78 lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~ 154 (410)
T 2j0s_A 78 IAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD---Y 154 (410)
T ss_dssp EEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH---H
T ss_pred EEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhh---c
Confidence 3344555666533 2 233332234569999999999999998888764 477888999988766544432 2
Q ss_pred CCccEEEeeh-----hhhc-cCCCCCccEEEE
Q 003887 519 GVYHVLIATD-----VAAR-GLDIKSIKSVVN 544 (789)
Q Consensus 519 G~~~VLVaT~-----v~~~-GlDI~~v~~VI~ 544 (789)
...|+|+|. .+.+ .+++..+++||.
T Consensus 155 -~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vVi 185 (410)
T 2j0s_A 155 -GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVL 185 (410)
T ss_dssp -CCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred -CCCEEEcCHHHHHHHHHhCCccHhheeEEEE
Confidence 458999993 2333 466777787774
No 239
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=67.22 E-value=4.3 Score=44.90 Aligned_cols=37 Identities=19% Similarity=0.155 Sum_probs=24.3
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcC
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP 306 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~P 306 (789)
|.-+++.|++|+|||.. ++-++.++..+ +..++++.-
T Consensus 197 G~liiIaG~pG~GKTtl-al~ia~~~a~~-------g~~vl~fSl 233 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAF-ALKQAKNMSDN-------DDVVNLHSL 233 (444)
T ss_dssp SCEEEEEECSSSSHHHH-HHHHHHHHHHT-------TCEEEEECS
T ss_pred CcEEEEEeCCCCChHHH-HHHHHHHHHHc-------CCEEEEEEC
Confidence 35588899999999975 44444444332 445777653
No 240
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=67.02 E-value=19 Score=38.32 Aligned_cols=93 Identities=13% Similarity=0.167 Sum_probs=60.4
Q ss_pred EecCCCcchHHH----HHHhcCCCCCCCcEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcC
Q 003887 448 HVIPSDAEKLPW----LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSG 519 (789)
Q Consensus 448 ~~~~~~~~k~~~----L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G 519 (789)
...+....|-.. ++..+.......++||.|+++.-+..+++.+... ++.+..++|+......... ..+
T Consensus 63 i~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~ 138 (400)
T 1s2m_A 63 ARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR----LNE 138 (400)
T ss_dssp EECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH----TTS
T ss_pred EECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH----hcC
Confidence 344455566532 2233333223458999999999998888888764 6788899998886543222 235
Q ss_pred CccEEEeeh-----hhh-ccCCCCCccEEEE
Q 003887 520 VYHVLIATD-----VAA-RGLDIKSIKSVVN 544 (789)
Q Consensus 520 ~~~VLVaT~-----v~~-~GlDI~~v~~VI~ 544 (789)
..+|+|+|. .+. ..+++..+.+||.
T Consensus 139 ~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIi 169 (400)
T 1s2m_A 139 TVHILVGTPGRVLDLASRKVADLSDCSLFIM 169 (400)
T ss_dssp CCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred CCCEEEEchHHHHHHHHhCCcccccCCEEEE
Confidence 678999993 222 3366777887775
No 241
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=66.95 E-value=4.4 Score=44.46 Aligned_cols=43 Identities=21% Similarity=0.294 Sum_probs=31.8
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHH
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAH 312 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~ 312 (789)
..+++++|+||+|||.. +.+++..++.. +..++|+=|..++..
T Consensus 53 ~~h~~i~G~tGsGKs~~-~~~li~~~~~~-------g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVL-LRELAYTGLLR-------GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHH-HHHHHHHHHHT-------TCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHH-HHHHHHHHHHC-------CCcEEEEeCCCchhH
Confidence 47899999999999986 44455554432 456888889888864
No 242
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=66.32 E-value=4.7 Score=34.90 Aligned_cols=47 Identities=19% Similarity=0.153 Sum_probs=37.6
Q ss_pred HHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCC
Q 003887 459 WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKD 505 (789)
Q Consensus 459 ~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~ 505 (789)
.|.+.+..+....+++|||.+-..+...+..|...|+.+..|.|++.
T Consensus 44 ~l~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 44 ELREKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HHHHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHHHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 34444544445668999999988899999999999999999999865
No 243
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=65.79 E-value=6.5 Score=46.74 Aligned_cols=16 Identities=38% Similarity=0.520 Sum_probs=14.5
Q ss_pred CCEEEEccCCChhhHH
Q 003887 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvl~~a~TGsGKTla 278 (789)
+.+|+.+|.|+|||+.
T Consensus 239 ~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLI 254 (806)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5799999999999975
No 244
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=65.19 E-value=5.6 Score=39.58 Aligned_cols=72 Identities=19% Similarity=0.326 Sum_probs=48.9
Q ss_pred CCcEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeeh-hh----hc---cCCCC
Q 003887 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA----AR---GLDIK 537 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~----~~---GlDI~ 537 (789)
..++||.+++++-+..+++.+.+. ++.+..++|+..... .......+..+|+|+|. .+ .+ .+++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 347999999999999999888775 667777776532211 11222346678999993 22 22 47888
Q ss_pred CccEEEE
Q 003887 538 SIKSVVN 544 (789)
Q Consensus 538 ~v~~VI~ 544 (789)
.+.+||.
T Consensus 175 ~~~~lVi 181 (245)
T 3dkp_A 175 SVEWLVV 181 (245)
T ss_dssp TCCEEEE
T ss_pred cCcEEEE
Confidence 8888775
No 245
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=65.05 E-value=15 Score=43.77 Aligned_cols=18 Identities=33% Similarity=0.440 Sum_probs=15.4
Q ss_pred cCCCEEEEccCCChhhHH
Q 003887 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla 278 (789)
.++.+++++++|+|||+.
T Consensus 237 ~~~~vLL~Gp~GtGKTtL 254 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCCEEEECSCTTSSHHHH
T ss_pred CCCeEEEECcCCCCHHHH
Confidence 356799999999999974
No 246
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=64.88 E-value=4.4 Score=39.01 Aligned_cols=121 Identities=13% Similarity=0.194 Sum_probs=70.5
Q ss_pred CcHHHHHHHHHHHcCC--CEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003887 248 PTSIQCQALPIILSGR--DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (789)
Q Consensus 248 ptpiQ~~ai~~il~gr--dvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~ 325 (789)
..+-|..++..++..+ -.++.+.-|++||...+.-++... +..|..+.||+|+..-.....+..
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a-------~~~Gr~V~vLAp~~~s~~~l~~~~------- 100 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMA-------REQGREVQIIAADRRSQMNMKQDE------- 100 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHH-------HHTTCCEEEECSTTHHHHHHSCTT-------
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHH-------HhcCeEEEEEcCchHHHHHHHhhc-------
Confidence 3467888898887554 356678999999987544433322 245788999999987665432211
Q ss_pred CcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEEEEcccchhccCCChHHHHHHHhh-cCCCc
Q 003887 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQ-IRPDR 404 (789)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~-~~~~~ 404 (789)
++.- +++ +. ..+......|..=+++|||||-.|.- ..+..++.. ...+.
T Consensus 101 ~l~~--------------------~t~-t~-----~~ll~~~~~~tp~s~lIVD~AekLS~----kE~~~Lld~A~~~na 150 (189)
T 2l8b_A 101 RLSG--------------------ELI-TG-----RRQLLEGMAFTPGSTVIVDQGEKLSL----KETLTLLDGAARHNV 150 (189)
T ss_dssp TCSS--------------------CSS-ST-----TTTTTTSCCCCCCCEEEEEESSSHHH----HHHHHHHHHHHHTTC
T ss_pred CcCc--------------------cee-eh-----hhhhcCCCCCCCCCEEEEechhhcCH----HHHHHHHHHHHhcCC
Confidence 1110 011 11 11122232234445899999998763 334444433 23567
Q ss_pred eEEEEecc
Q 003887 405 QTLLFSAT 412 (789)
Q Consensus 405 q~ll~SAT 412 (789)
|+|++--+
T Consensus 151 qvvll~~~ 158 (189)
T 2l8b_A 151 QVLITDSG 158 (189)
T ss_dssp CEEEEESS
T ss_pred EEEEeCCc
Confidence 88887665
No 247
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=64.85 E-value=26 Score=37.25 Aligned_cols=94 Identities=21% Similarity=0.248 Sum_probs=62.1
Q ss_pred EecCCCcchHHH----HHHhcCCCCCCCcEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcC
Q 003887 448 HVIPSDAEKLPW----LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSG 519 (789)
Q Consensus 448 ~~~~~~~~k~~~----L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G 519 (789)
...+....|-.. ++..+.......++||.++++.-+..+++.+... +..+..++|+...... +..+..+
T Consensus 82 v~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 158 (414)
T 3eiq_A 82 AQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQME 158 (414)
T ss_dssp ECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTT
T ss_pred EECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcC
Confidence 344455566433 2334443334568999999999998888888764 5778888888775443 4455667
Q ss_pred CccEEEeeh-----hhh-ccCCCCCccEEEE
Q 003887 520 VYHVLIATD-----VAA-RGLDIKSIKSVVN 544 (789)
Q Consensus 520 ~~~VLVaT~-----v~~-~GlDI~~v~~VI~ 544 (789)
..+|+|+|. .+. ..+++..+.+||.
T Consensus 159 ~~~iiv~T~~~l~~~l~~~~~~~~~~~~vVi 189 (414)
T 3eiq_A 159 APHIIVGTPGRVFDMLNRRYLSPKYIKMFVL 189 (414)
T ss_dssp CCSEEEECHHHHHHHHHHTSSCSTTCCEEEE
T ss_pred CCCEEEECHHHHHHHHHcCCcccccCcEEEE
Confidence 889999993 222 3356777777664
No 248
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=64.56 E-value=15 Score=40.18 Aligned_cols=68 Identities=12% Similarity=0.179 Sum_probs=50.3
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHH---HHhc-CCcEEEeCHHHHHHHHhhccccccceeEE
Q 003887 301 GVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYL 376 (789)
Q Consensus 301 vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~---~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i~~l 376 (789)
+||.|+|+.-|..+++.+.+. ++.+..++|+....+... .+.. ...|+|||. .+ ...+++..+++|
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~-~rGlDi~~v~~V 372 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VA-SRGLDIKNIKHV 372 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GG-TSSCCCTTCCEE
T ss_pred EEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hh-hCCCCcccCCEE
Confidence 899999999998887777664 788999999887655433 3333 478999994 22 345567788887
Q ss_pred EE
Q 003887 377 VL 378 (789)
Q Consensus 377 Vl 378 (789)
|.
T Consensus 373 I~ 374 (434)
T 2db3_A 373 IN 374 (434)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 249
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=64.51 E-value=6.9 Score=43.94 Aligned_cols=71 Identities=13% Similarity=0.297 Sum_probs=48.2
Q ss_pred CCcEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeeh-hhh----cc-C-CCCC
Q 003887 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA----RG-L-DIKS 538 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~~----~G-l-DI~~ 538 (789)
..++||.|+++.-+..+...+... ++.+..+||+.+...+...+. . ..+|+|+|. .+. .+ + .+..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI---E-DSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH---H-HCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh---C-CCCEEEECHHHHHHHHHhCccccccc
Confidence 568999999999888888877764 899999999987655433222 1 378999993 332 22 4 6777
Q ss_pred ccEEEE
Q 003887 539 IKSVVN 544 (789)
Q Consensus 539 v~~VI~ 544 (789)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888875
No 250
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=64.19 E-value=3.1 Score=42.49 Aligned_cols=20 Identities=30% Similarity=0.232 Sum_probs=16.3
Q ss_pred HHcCCCEEEEccCCChhhHH
Q 003887 259 ILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 259 il~grdvl~~a~TGsGKTla 278 (789)
+..|.-+++++|||||||..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 34566788999999999975
No 251
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=64.00 E-value=6.1 Score=42.28 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=14.7
Q ss_pred cCCCEEEEccCCChhhHH
Q 003887 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla 278 (789)
.+.-+++++|||||||+.
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 344688999999999975
No 252
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=63.37 E-value=18 Score=37.71 Aligned_cols=25 Identities=28% Similarity=0.187 Sum_probs=18.4
Q ss_pred HHHHHHc-----CCCEEEEccCCChhhHHH
Q 003887 255 ALPIILS-----GRDIIGIAKTGSGKTAAF 279 (789)
Q Consensus 255 ai~~il~-----grdvl~~a~TGsGKTla~ 279 (789)
.+..++. |.-+++.+++|+|||...
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la 115 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIM 115 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHH
Confidence 3555553 356889999999999753
No 253
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=62.02 E-value=11 Score=38.95 Aligned_cols=108 Identities=14% Similarity=0.041 Sum_probs=64.1
Q ss_pred CCcEEEEecccccHHHHHHHHHHc-----CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeeh-hh-----h-ccCCCC
Q 003887 470 DGDVLVFASKKTTVDEIESQLAQK-----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA-----A-RGLDIK 537 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~-----~-~GlDI~ 537 (789)
..++||.+++++-|..++..+... ++.+..++|+...... .....+|||+|. .+ . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 347999999999999988888764 4667777776653221 134568999994 22 1 357888
Q ss_pred CccEEEEEcC-----CCCHHHHHHHHhhcCCCCCCCeEEEEEEccccHHHHHHHHH
Q 003887 538 SIKSVVNFDI-----ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVN 588 (789)
Q Consensus 538 ~v~~VI~~d~-----p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~ 588 (789)
.+.+||.=.. .......+.++-+..+ ...-+++++..-...+..+.+
T Consensus 235 ~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~----~~~q~i~~SAT~~~~v~~~a~ 286 (300)
T 3fmo_B 235 KIKVFVLDEADVMIATQGHQDQSIRIQRMLP----RNCQMLLFSATFEDSVWKFAQ 286 (300)
T ss_dssp GCSEEEETTHHHHHHSTTHHHHHHHHHTTSC----TTCEEEEEESCCCHHHHHHHH
T ss_pred hceEEEEeCHHHHhhccCcHHHHHHHHHhCC----CCCEEEEEeccCCHHHHHHHH
Confidence 8988885221 1223333444444332 233455666554433333333
No 254
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=61.62 E-value=5.2 Score=44.84 Aligned_cols=71 Identities=14% Similarity=0.352 Sum_probs=50.3
Q ss_pred CCcEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeeh-hhh----cc-C-CCCC
Q 003887 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA----RG-L-DIKS 538 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~~----~G-l-DI~~ 538 (789)
..++||+|+++.-+..+...+... ++.+..+||+.+...+...+. ...+|+|+|. .+. .+ + .+..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 568999999998888877777664 899999999987554432222 1378999993 332 22 3 5667
Q ss_pred ccEEEE
Q 003887 539 IKSVVN 544 (789)
Q Consensus 539 v~~VI~ 544 (789)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777775
No 255
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=61.37 E-value=8.2 Score=46.01 Aligned_cols=71 Identities=13% Similarity=0.293 Sum_probs=47.8
Q ss_pred CCcEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeeh-hhh----cc-C-CCCC
Q 003887 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA----RG-L-DIKS 538 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~~----~G-l-DI~~ 538 (789)
.+++||.|+++.-+..+...|... ++.+..+||+.+...+...+. ...+|+|+|. .+. .+ + .+..
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 568999999999888888777665 899999999997655433222 2478999993 332 22 3 5667
Q ss_pred ccEEEE
Q 003887 539 IKSVVN 544 (789)
Q Consensus 539 v~~VI~ 544 (789)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777774
No 256
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=60.64 E-value=17 Score=38.52 Aligned_cols=50 Identities=12% Similarity=-0.012 Sum_probs=27.5
Q ss_pred HHHHHc-----CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCc
Q 003887 256 LPIILS-----GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (789)
Q Consensus 256 i~~il~-----grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PT 307 (789)
+..++. |.-+++.+++|+|||.. ++.++..+..... ....+..++++.-.
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtl-a~~la~~~~~~~~-~gg~~~~vlyi~~E 165 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQL-SHTLCVTAQLPGA-GGYPGGKIIFIDTE 165 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHH-HHHHHHHTTSCBT-TTBCCCEEEEEESS
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHH-HHHHHHHHhcccc-cCCCCCeEEEEECC
Confidence 455553 45678999999999975 3333333221110 01124567777543
No 257
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=60.56 E-value=7.1 Score=34.63 Aligned_cols=46 Identities=20% Similarity=0.192 Sum_probs=36.2
Q ss_pred HHHhcCCCCCCCcEEEEeccccc--HHHHHHHHHHcCCceeeccCCCC
Q 003887 460 LLEKLPGMIDDGDVLVFASKKTT--VDEIESQLAQKGFKAAALHGDKD 505 (789)
Q Consensus 460 L~~~L~~~~~~~kvLVF~~s~~~--a~~l~~~L~~~g~~v~~lhg~~~ 505 (789)
|...+..+....+++|||.+-.. +..++..|...|+.+..|.|++.
T Consensus 61 l~~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 61 LATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp HHHHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred HHHHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 44444444456689999999877 88999999999999888988764
No 258
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=59.93 E-value=9.7 Score=49.72 Aligned_cols=46 Identities=22% Similarity=0.206 Sum_probs=30.2
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHH
Q 003887 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIY 315 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~ 315 (789)
.++.+++++++|+|||+.++..+...+ + .|-+++++. ..++..+++
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~-k-------~Ge~~~Fit-~ee~~~~L~ 1125 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQ-R-------EGKTCAFID-AEHALDPIY 1125 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH-T-------TTCCEEEEC-TTSCCCHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-H-------cCCeEEEEE-ccccHHHHH
Confidence 568899999999999986444433333 2 255577764 445555555
No 259
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=59.27 E-value=27 Score=38.35 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=14.1
Q ss_pred CCEEEEccCCChhhHHHH
Q 003887 263 RDIIGIAKTGSGKTAAFV 280 (789)
Q Consensus 263 rdvl~~a~TGsGKTla~l 280 (789)
+.++++++.|+|||+...
T Consensus 101 ~vI~ivG~~GvGKTT~a~ 118 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVG 118 (433)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357778999999998633
No 260
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=58.54 E-value=25 Score=37.21 Aligned_cols=24 Identities=29% Similarity=0.248 Sum_probs=18.1
Q ss_pred HHHHHHc-----CCCEEEEccCCChhhHH
Q 003887 255 ALPIILS-----GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 255 ai~~il~-----grdvl~~a~TGsGKTla 278 (789)
.+..++. |+-+.++++.|+|||..
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL 147 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQL 147 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHH
Confidence 4555653 45678999999999975
No 261
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=58.34 E-value=8.8 Score=32.03 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=34.8
Q ss_pred HhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCC
Q 003887 462 EKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKD 505 (789)
Q Consensus 462 ~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~ 505 (789)
..+..... .+++|||.+-..+...+..|...|+.+..|.|++.
T Consensus 46 ~~~~~l~~-~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 46 KGEHGLPR-RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp TTCCCCCS-SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred HHHHhCCC-CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 33444445 78999999988899999999999999888888864
No 262
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=58.06 E-value=13 Score=40.68 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=17.2
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHH
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l 287 (789)
+.-+++++|||||||+. +-.++..+
T Consensus 167 ggii~I~GpnGSGKTTl-L~allg~l 191 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTT-LYAGLQEL 191 (418)
T ss_dssp SEEEEEECSTTSCHHHH-HHHHHHHH
T ss_pred CCeEEEECCCCCCHHHH-HHHHHhhc
Confidence 34578999999999975 33344443
No 263
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.30 E-value=21 Score=39.17 Aligned_cols=54 Identities=19% Similarity=0.262 Sum_probs=31.0
Q ss_pred CCCCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHH
Q 003887 222 RPVKTFEDCGFSTQLMHAISKQ---GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~---g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla 278 (789)
+|-.+|++.+--+...+.|... .+..|--++.-.+ ---+.+|+.+|+|+|||+.
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~---~~prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI---KPPKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTSSHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeEEEECCCCCcHHHH
Confidence 4567899987666655555432 0111111111110 1237899999999999975
No 264
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=57.17 E-value=26 Score=36.04 Aligned_cols=91 Identities=14% Similarity=0.129 Sum_probs=59.2
Q ss_pred EEecCCCcchHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCcc
Q 003887 447 VHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYH 522 (789)
Q Consensus 447 ~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~ 522 (789)
+...+....|-...+..+.. ...++||.++++.-+..+++.+.+. +..+..++|+.........+ . ..+
T Consensus 35 lv~~~TGsGKT~~~~~~~~~--~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~ 107 (337)
T 2z0m_A 35 VVRAKTGSGKTAAYAIPILE--LGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRV---R--NAD 107 (337)
T ss_dssp EEECCTTSSHHHHHHHHHHH--HTCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHH---T--TCS
T ss_pred EEEcCCCCcHHHHHHHHHHh--hcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhc---C--CCC
Confidence 33444555665433222221 2568999999999999988888753 57889999999876544332 2 378
Q ss_pred EEEeeh-hhh-----ccCCCCCccEEEE
Q 003887 523 VLIATD-VAA-----RGLDIKSIKSVVN 544 (789)
Q Consensus 523 VLVaT~-v~~-----~GlDI~~v~~VI~ 544 (789)
|+|+|. .+. ..+++..+++||.
T Consensus 108 i~v~T~~~l~~~~~~~~~~~~~~~~iVi 135 (337)
T 2z0m_A 108 IVVATPGRLLDLWSKGVIDLSSFEIVII 135 (337)
T ss_dssp EEEECHHHHHHHHHTTSCCGGGCSEEEE
T ss_pred EEEECHHHHHHHHHcCCcchhhCcEEEE
Confidence 999994 222 2346667777664
No 265
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=56.97 E-value=48 Score=34.20 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=13.6
Q ss_pred CCCEEEEccCCChhhHH
Q 003887 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvl~~a~TGsGKTla 278 (789)
++-+++++++|+|||..
T Consensus 98 ~~vi~i~G~~G~GKTT~ 114 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTT 114 (297)
T ss_dssp SEEEEEECSSCSSTTHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34567789999999975
No 266
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=56.84 E-value=22 Score=44.32 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=26.6
Q ss_pred EEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcH
Q 003887 266 IGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTR 308 (789)
Q Consensus 266 l~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTr 308 (789)
+|.|..|||||.+ ++.-+.+++... ..+..+|+|||..
T Consensus 5 lV~agAGSGKT~~-l~~ri~~ll~~~----~~~~~il~lVP~q 42 (1166)
T 3u4q_B 5 FLVGRSGSGKTKL-IINSIQDELRRA----PFGKPIIFLVPDQ 42 (1166)
T ss_dssp EEEECTTSSHHHH-HHHHHHHHHHHC----TTSSCEEEECCGG
T ss_pred EEEeCCCCChHHH-HHHHHHHHHHhC----CCCCcEEEEecCc
Confidence 6889999999987 444455554431 2346789999985
No 267
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=56.32 E-value=11 Score=41.30 Aligned_cols=68 Identities=13% Similarity=0.153 Sum_probs=44.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhc-CCcEEEeCHHHHHHHHhhccccccceeEE
Q 003887 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYL 376 (789)
Q Consensus 298 gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i~~l 376 (789)
+.++||.||++.-|..+++.+++. ++++..++|. ........+.. ..+|+|||. .+. ..+++. +++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~-~R~~~~~~F~~g~~~vLVaT~-----v~e-~GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRK-TFEREYPTIKQKKPDFILATD-----IAE-MGANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSS-SCC--------CCCSEEEESS-----STT-CCTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecch-hHHHHHhhhcCCCceEEEECC-----hhh-eeeccC-ceEE
Confidence 456999999999999988888775 7888888884 33344444444 479999993 332 234566 7766
Q ss_pred E
Q 003887 377 V 377 (789)
Q Consensus 377 V 377 (789)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 5
No 268
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=56.11 E-value=12 Score=36.62 Aligned_cols=31 Identities=29% Similarity=0.261 Sum_probs=25.8
Q ss_pred CcHHHHHHHHHHHcCCCEEEEccCCChhhHH
Q 003887 248 PTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 248 ptpiQ~~ai~~il~grdvl~~a~TGsGKTla 278 (789)
-+.-|..++..+..|.-+.+.++.|+|||+.
T Consensus 8 k~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 8 KTLGQKHYVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp CSHHHHHHHHHHHHCSEEEEECCTTSSTTHH
T ss_pred CCHhHHHHHHhccCCCEEEEECCCCCCHHHH
Confidence 3455777888888898899999999999974
No 269
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=55.72 E-value=1.1e+02 Score=33.53 Aligned_cols=75 Identities=13% Similarity=0.067 Sum_probs=48.3
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHH---HHHhc-CCcEEEeCHHHHHHHHhhcccccccee
Q 003887 299 PIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF---KELKA-GCEIVIATPGRLIDMLKMKALTMSRVT 374 (789)
Q Consensus 299 p~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~---~~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i~ 374 (789)
...+|++..+.-+..+.+.+.+. +.++..++|+.+..+.. ..+.. ..+|+|||+..+-. .+++..++
T Consensus 348 ~~~~ivf~~~~~~~~l~~~L~~~----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-----GiDip~v~ 418 (510)
T 2oca_A 348 ENAFVMFKHVSHGKAIFDLIKNE----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-----GISVKNLH 418 (510)
T ss_dssp CEEEEEESSHHHHHHHHHHHHTT----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-----SCCCCSEE
T ss_pred CCeEEEEecHHHHHHHHHHHHHc----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-----ccccccCc
Confidence 33445555555555555544443 45888888888755432 23333 46899999766644 45788899
Q ss_pred EEEEcccc
Q 003887 375 YLVLDEAD 382 (789)
Q Consensus 375 ~lVlDEah 382 (789)
+||+..+.
T Consensus 419 ~vi~~~~~ 426 (510)
T 2oca_A 419 HVVLAHGV 426 (510)
T ss_dssp EEEESSCC
T ss_pred EEEEeCCC
Confidence 99988777
No 270
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=54.86 E-value=13 Score=40.64 Aligned_cols=53 Identities=17% Similarity=0.093 Sum_probs=39.9
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhc-CCcEEEeC
Q 003887 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKA-GCEIVIAT 355 (789)
Q Consensus 298 gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~-~~dIiV~T 355 (789)
+.++||+||++.-+..+++.+++. ++++..++|. ........+.. ..+|+|||
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~-~r~~~~~~f~~g~~~vLVaT 224 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRK-TFESEYPKCKSEKWDFVITT 224 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTT-THHHHTTHHHHSCCSEEEEC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCc-cHHHHHHhhcCCCCeEEEEC
Confidence 346899999999999988888776 7888888876 33333444443 47999999
No 271
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=54.14 E-value=4.7 Score=34.25 Aligned_cols=37 Identities=19% Similarity=0.329 Sum_probs=32.5
Q ss_pred CCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCC
Q 003887 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKD 505 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~ 505 (789)
...+++|||.+-..+...+..|...|+++..|.|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 4568999999988899999999999999999988754
No 272
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=54.11 E-value=43 Score=37.59 Aligned_cols=125 Identities=14% Similarity=0.202 Sum_probs=61.6
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHH
Q 003887 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~ 340 (789)
.|.-+++.+++|+|||... ..++..+.. .+.+++++++... ..|+...+..+ ++. ..
T Consensus 280 ~G~i~~i~G~~GsGKSTLl-~~l~g~~~~-------~G~~vi~~~~ee~-~~~l~~~~~~~----g~~---------~~- 336 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLV-SRFVENACA-------NKERAILFAYEES-RAQLLRNAYSW----GMD---------FE- 336 (525)
T ss_dssp SSCEEEEEECTTSSHHHHH-HHHHHHHHT-------TTCCEEEEESSSC-HHHHHHHHHTT----SCC---------HH-
T ss_pred CCcEEEEEeCCCCCHHHHH-HHHHHHHHh-------CCCCEEEEEEeCC-HHHHHHHHHHc----CCC---------HH-
Confidence 4567889999999999753 222222211 2334666665432 23444433221 211 11
Q ss_pred HHHHHhcCCcEEE-------eCHHHHHHHHhhccccccceeEEEEcccchhccCC-----ChHHHHHHHhhcCC-CceEE
Q 003887 341 QFKELKAGCEIVI-------ATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG-----FEPQIRSIVGQIRP-DRQTL 407 (789)
Q Consensus 341 ~~~~l~~~~dIiV-------~Tp~~L~~~l~~~~~~l~~i~~lVlDEah~m~~~~-----f~~~i~~il~~~~~-~~q~l 407 (789)
... ..+ .+-+ .+.+.....+.... ...+.++|||| -=.-++.. ....+..++..+.. ..-+|
T Consensus 337 ~~~--~~g-~~~~~~~~p~~LS~g~~q~~~~a~~-l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvi 411 (525)
T 1tf7_A 337 EME--RQN-LLKIVCAYPESAGLEDHLQIIKSEI-NDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGL 411 (525)
T ss_dssp HHH--HTT-SEEECCCCGGGSCHHHHHHHHHHHH-HTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHH--hCC-CEEEEEeccccCCHHHHHHHHHHHH-HhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEE
Confidence 111 111 1111 14454444443322 24567899999 66666665 45555566655543 33445
Q ss_pred EEeccC
Q 003887 408 LFSATM 413 (789)
Q Consensus 408 l~SATl 413 (789)
+.|...
T Consensus 412 lvsh~~ 417 (525)
T 1tf7_A 412 FTNTSD 417 (525)
T ss_dssp EEEECS
T ss_pred EEECcc
Confidence 555443
No 273
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=53.62 E-value=5.3 Score=35.53 Aligned_cols=38 Identities=13% Similarity=0.259 Sum_probs=32.3
Q ss_pred CC-CcEEEEe-cccccHHHHHHHHHHcCCceeeccCCCCH
Q 003887 469 DD-GDVLVFA-SKKTTVDEIESQLAQKGFKAAALHGDKDQ 506 (789)
Q Consensus 469 ~~-~kvLVF~-~s~~~a~~l~~~L~~~g~~v~~lhg~~~~ 506 (789)
.. .+++||| .+-..+..++..|...|+.+..|.|++..
T Consensus 87 ~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 87 LNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp TTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred cCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 44 6899999 57778889999999999999999998764
No 274
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=53.51 E-value=5.6 Score=33.90 Aligned_cols=37 Identities=11% Similarity=0.198 Sum_probs=32.5
Q ss_pred CCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCC
Q 003887 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKD 505 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~ 505 (789)
...+++|||.+-..+...+..|...|+.+..|.|++.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 4568999999998999999999999999999988754
No 275
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=53.43 E-value=17 Score=36.38 Aligned_cols=16 Identities=25% Similarity=0.549 Sum_probs=14.2
Q ss_pred CCEEEEccCCChhhHH
Q 003887 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvl~~a~TGsGKTla 278 (789)
+.+++.+++|+|||..
T Consensus 46 ~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLL 61 (257)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECcCCCCHHHH
Confidence 5699999999999975
No 276
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=53.38 E-value=5.3 Score=34.40 Aligned_cols=40 Identities=10% Similarity=0.177 Sum_probs=33.2
Q ss_pred CCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCC
Q 003887 466 GMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKD 505 (789)
Q Consensus 466 ~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~ 505 (789)
++....+++|+|.+-..+...+..|...|+.+..|.|++.
T Consensus 52 ~l~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~ 91 (103)
T 3iwh_A 52 SFNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp GCCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred hhcCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence 3334568999999988899999999999999888888753
No 277
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=53.10 E-value=26 Score=41.52 Aligned_cols=75 Identities=16% Similarity=0.226 Sum_probs=54.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhh-------cCcEEEEEEcCCChHHHHHHHh---------cCCcEEEeCHHHHHH
Q 003887 298 GPIGVICAPTRELAHQIYLETKKFAKS-------HGIRVSAVYGGMSKLDQFKELK---------AGCEIVIATPGRLID 361 (789)
Q Consensus 298 gp~vLIl~PTreLa~Qi~~~~~k~~~~-------~~i~v~~~~gg~~~~~~~~~l~---------~~~dIiV~Tp~~L~~ 361 (789)
+..+||.||++.-+..+++.+.+.+.. .++.+..++|+.+..++...+. ....|||||.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~----- 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN----- 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----
Confidence 567999999999999999888864322 4788999999998776644332 1358999993
Q ss_pred HHhhccccccceeEEEE
Q 003887 362 MLKMKALTMSRVTYLVL 378 (789)
Q Consensus 362 ~l~~~~~~l~~i~~lVl 378 (789)
.+.. .+++..+.+||-
T Consensus 378 iae~-GidIp~v~~VId 393 (773)
T 2xau_A 378 IAET-SLTIDGIVYVVD 393 (773)
T ss_dssp HHHH-TCCCTTEEEEEE
T ss_pred HHHh-CcCcCCeEEEEe
Confidence 3332 446778887764
No 278
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=52.69 E-value=8.3 Score=49.58 Aligned_cols=44 Identities=25% Similarity=0.241 Sum_probs=31.3
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHH
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQ 313 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Q 313 (789)
|+-+.+.+|.|||||+. ++++++...+ .+..++++.+-.+|...
T Consensus 1431 g~~iei~g~~~sGkttl-~~~~~a~~~~-------~g~~~~~i~~e~~~~~~ 1474 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTL-TLQVIAAAQR-------EGKTCAFIDAEHALDPI 1474 (1706)
T ss_dssp TSEEEEECSTTSSHHHH-HHHHHHHHHH-------TTCCEEEECTTSCCCHH
T ss_pred CCEEEEEcCCCCCHHHH-HHHHHHHHHh-------cCCeEEEEecCCCCCHH
Confidence 35688999999999986 5566655433 36668888886666644
No 279
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=52.67 E-value=15 Score=49.48 Aligned_cols=48 Identities=23% Similarity=0.260 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHcCCCCCcHHHH----HHHHHHHcCCCEEEEccCCChhhHHHH
Q 003887 232 FSTQLMHAISKQGYEKPTSIQC----QALPIILSGRDIIGIAKTGSGKTAAFV 280 (789)
Q Consensus 232 l~~~l~~~l~~~g~~~ptpiQ~----~ai~~il~grdvl~~a~TGsGKTla~l 280 (789)
+...+.+.+.+.++. +++.+. |....+...+.++++||||+|||.++-
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 445566777777774 555552 233445567789999999999998744
No 280
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=52.66 E-value=16 Score=44.38 Aligned_cols=71 Identities=13% Similarity=0.293 Sum_probs=46.7
Q ss_pred CCcEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeeh-hhh----cc-C-CCCC
Q 003887 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA----RG-L-DIKS 538 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~~----~G-l-DI~~ 538 (789)
.+++||.|+++.-+..+...|... ++.+..+||+.+...+...+. ...+|+|+|. .+. ++ + .+..
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 371 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH----HHCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc----cCCCEEEecHHHHHHHHHcCccccccC
Confidence 568999999998888877777664 899999999987654332221 1368999993 332 22 3 5666
Q ss_pred ccEEEE
Q 003887 539 IKSVVN 544 (789)
Q Consensus 539 v~~VI~ 544 (789)
+++||.
T Consensus 372 ~~liVi 377 (936)
T 4a2w_A 372 FTLMIF 377 (936)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777775
No 281
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=52.52 E-value=12 Score=43.48 Aligned_cols=67 Identities=19% Similarity=0.223 Sum_probs=48.7
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhccccccceeEE
Q 003887 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYL 376 (789)
Q Consensus 297 ~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~l 376 (789)
.+.++||.|+|+.-+.++++.+++. ++.+..++|+.+.... ...+.+|||||. .+.+.. ++. +++|
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~er---~~~~~~VLVATd-----VaerGI-DId-V~~V 460 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSVI---PTIGDVVVVATD-----ALMTGY-TGD-FDSV 460 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGGS---CSSSCEEEEECT-----THHHHC-CCC-BSEE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHHH---HhCCCcEEEECC-----hHHccC-CCC-CcEE
Confidence 4568999999999999888877764 7899999999876542 134579999993 444433 344 7766
Q ss_pred E
Q 003887 377 V 377 (789)
Q Consensus 377 V 377 (789)
|
T Consensus 461 I 461 (666)
T 3o8b_A 461 I 461 (666)
T ss_dssp E
T ss_pred E
Confidence 6
No 282
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=52.50 E-value=32 Score=40.80 Aligned_cols=70 Identities=10% Similarity=0.083 Sum_probs=52.5
Q ss_pred CCCcEEEEecccccHHHHHHHHHH----cCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeeh-hh-----h-------
Q 003887 469 DDGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA-----A------- 531 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~----~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~-----~------- 531 (789)
....++|.+++..-|.++++.+.. .|+.+.++.|+++..+|.... .+.|+|+|. .+ .
T Consensus 123 ~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~~~ 196 (844)
T 1tf5_A 123 TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVLYK 196 (844)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhcch
Confidence 345899999999998888777654 589999999999987665543 378999994 33 1
Q ss_pred ccCCCCCccEEEE
Q 003887 532 RGLDIKSIKSVVN 544 (789)
Q Consensus 532 ~GlDI~~v~~VI~ 544 (789)
..+++..++++|.
T Consensus 197 ~~l~lr~~~~lVl 209 (844)
T 1tf5_A 197 EQMVQRPLHFAVI 209 (844)
T ss_dssp GGCCCCCCCEEEE
T ss_pred hhhcccCCCEEEE
Confidence 1366777887774
No 283
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=52.20 E-value=34 Score=32.07 Aligned_cols=80 Identities=10% Similarity=0.291 Sum_probs=57.0
Q ss_pred chHHHHHHhcCCC-CCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehhhhcc
Q 003887 455 EKLPWLLEKLPGM-IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARG 533 (789)
Q Consensus 455 ~k~~~L~~~L~~~-~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~~G 533 (789)
.-..++.+.+... ...+.+-|.|.+...+..+...|...++.+..+..+.. .| .-.|.|+|--.+.|
T Consensus 45 ~e~~~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~---------~~---~~~v~v~t~~~~KG 112 (174)
T 3dmn_A 45 AGVDQVVDQLAMNDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ---------RL---APGVIVVPSFLAKG 112 (174)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC----------CC---CSSEEEEEGGGCTT
T ss_pred HHHHHHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc---------cc---CCCeEEEEccccCC
Confidence 3344444444321 12457899999999999999999999999888876442 12 24699999989999
Q ss_pred CCCCCccEEEEEcCCC
Q 003887 534 LDIKSIKSVVNFDIAR 549 (789)
Q Consensus 534 lDI~~v~~VI~~d~p~ 549 (789)
+.+ ++||.+++..
T Consensus 113 lEf---~~V~~~~~~~ 125 (174)
T 3dmn_A 113 LEF---DAVIVWNANQ 125 (174)
T ss_dssp CCE---EEEEEETCBT
T ss_pred cCC---CEEEEecCCc
Confidence 987 6777777543
No 284
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=51.11 E-value=15 Score=39.56 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=28.1
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHH
Q 003887 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTREL 310 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreL 310 (789)
.+.+++++++||+|||... -.++..+.. .+.+++|+=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~-~~~~~~~~~-------~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTA-KMLLLREYM-------QGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHH-HHHHHHHHT-------TTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHH-HHHHHHHHH-------CCCEEEEEeCCcCH
Confidence 4578999999999999753 333333322 25567888787553
No 285
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=50.17 E-value=13 Score=41.71 Aligned_cols=39 Identities=26% Similarity=0.164 Sum_probs=25.9
Q ss_pred HHHHHcCCCCCcHHHHHHHHH-HHcCCCEEEEccCCChhhHH
Q 003887 238 HAISKQGYEKPTSIQCQALPI-ILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 238 ~~l~~~g~~~ptpiQ~~ai~~-il~grdvl~~a~TGsGKTla 278 (789)
..|.+.|. +++.+...+.. +..+..++++++||||||+.
T Consensus 237 ~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 237 IDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 34444442 34445555544 45778899999999999975
No 286
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=49.95 E-value=19 Score=36.08 Aligned_cols=18 Identities=22% Similarity=0.422 Sum_probs=15.8
Q ss_pred cCCCEEEEccCCChhhHH
Q 003887 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla 278 (789)
....+++.+++|+|||..
T Consensus 28 ~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELI 45 (265)
T ss_dssp SCSCEEEECCTTSCHHHH
T ss_pred CCCCEEEECCCCCcHHHH
Confidence 457899999999999964
No 287
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=49.94 E-value=17 Score=40.70 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=21.4
Q ss_pred HHHHHHHHcCCCEEEEccCCChhhHH
Q 003887 253 CQALPIILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 253 ~~ai~~il~grdvl~~a~TGsGKTla 278 (789)
..++-.+..+.++++.+|+|+|||..
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHH
Confidence 44556677889999999999999964
No 288
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=49.50 E-value=23 Score=36.19 Aligned_cols=43 Identities=14% Similarity=0.197 Sum_probs=29.0
Q ss_pred HHHHHHHHHcCCCCCcHHHHHH-HHHHHcCC-----CEEEEccCCChhhHHH
Q 003887 234 TQLMHAISKQGYEKPTSIQCQA-LPIILSGR-----DIIGIAKTGSGKTAAF 279 (789)
Q Consensus 234 ~~l~~~l~~~g~~~ptpiQ~~a-i~~il~gr-----dvl~~a~TGsGKTla~ 279 (789)
..+.+.|+-+||. |++... +...+.++ .+++.+|.|+|||+.+
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 3677888878875 454332 34444443 4888999999999753
No 289
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=49.24 E-value=12 Score=39.20 Aligned_cols=23 Identities=30% Similarity=0.235 Sum_probs=18.8
Q ss_pred HHHHHcCCCEEEEccCCChhhHH
Q 003887 256 LPIILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 256 i~~il~grdvl~~a~TGsGKTla 278 (789)
+..+..+.++++.+++|+|||..
T Consensus 40 ~~~l~~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 40 LIGICTGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp HHHHHHTCCEEEESCCCHHHHHH
T ss_pred HHHHHcCCeEEEECCCCCcHHHH
Confidence 34455688999999999999964
No 290
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=49.23 E-value=5 Score=46.86 Aligned_cols=70 Identities=16% Similarity=0.350 Sum_probs=47.8
Q ss_pred CcEEEEecccccHHHH-HHHHHHcC---CceeeccCCCCHHHHHHHHHHhhcCCccEEEee-hhhhc-----------cC
Q 003887 471 GDVLVFASKKTTVDEI-ESQLAQKG---FKAAALHGDKDQASRMEILQKFKSGVYHVLIAT-DVAAR-----------GL 534 (789)
Q Consensus 471 ~kvLVF~~s~~~a~~l-~~~L~~~g---~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT-~v~~~-----------Gl 534 (789)
+++||.+|++.-+..+ .+.|.+.. +.+..+||+....++...+. +..+|||+| ..+.. .+
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~ 132 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAGV 132 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------CC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccce
Confidence 6899999999988888 88777653 89999999987654333322 468899999 34432 24
Q ss_pred CCCCccEEEE
Q 003887 535 DIKSIKSVVN 544 (789)
Q Consensus 535 DI~~v~~VI~ 544 (789)
.+..+++||.
T Consensus 133 ~~~~~~lvVi 142 (699)
T 4gl2_A 133 QLSDFSLIII 142 (699)
T ss_dssp CGGGCSEEEE
T ss_pred ecccCcEEEE
Confidence 6677888775
No 291
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=48.69 E-value=13 Score=35.69 Aligned_cols=55 Identities=20% Similarity=0.360 Sum_probs=34.9
Q ss_pred CCcEEEEecccccHHH-HHHHHHH---cCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeeh
Q 003887 470 DGDVLVFASKKTTVDE-IESQLAQ---KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD 528 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~-l~~~L~~---~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~ 528 (789)
..++||+|++..-+.. +.+.+.. .++.+..++|+.....+...+. ...+|+|+|.
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 5689999999888777 5555544 3678899998765432221111 1478999994
No 292
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=48.43 E-value=24 Score=34.60 Aligned_cols=75 Identities=17% Similarity=0.127 Sum_probs=41.6
Q ss_pred hccCCCHHHHHHHHHHcCcccccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC----CCEEEEcc
Q 003887 195 SISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG----RDIIGIAK 270 (789)
Q Consensus 195 ~i~~~s~~~~~~~r~~~~i~v~~~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~il~g----rdvl~~a~ 270 (789)
.+..|+-.+|-..+-+.- .+. +=...+.+.|+=+++ .+..+ ...+..++.+ +.+|+.+|
T Consensus 4 ~~~~m~~~~~i~~~~~~~---~~~------------~~w~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GP 66 (212)
T 1tue_A 4 FGSGSNMSQWIRFRCSKI---DEG------------GDWRPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGP 66 (212)
T ss_dssp --CCSCHHHHHHHHHHTS---CSC------------CCSHHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESC
T ss_pred HHHhcCHHHHHHHHHHHc---cCC------------CCHHHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECC
Confidence 456788888876664321 111 112355666664543 34444 4445555554 24888999
Q ss_pred CCChhhHHHHHHHHHHH
Q 003887 271 TGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 271 TGsGKTla~llp~l~~l 287 (789)
.|+|||.. ...++..+
T Consensus 67 PGtGKTt~-a~ala~~l 82 (212)
T 1tue_A 67 ANTGKSYF-GMSFIHFI 82 (212)
T ss_dssp GGGCHHHH-HHHHHHHH
T ss_pred CCCCHHHH-HHHHHHHh
Confidence 99999975 34444443
No 293
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=48.19 E-value=17 Score=45.99 Aligned_cols=44 Identities=20% Similarity=0.348 Sum_probs=32.3
Q ss_pred ccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEeccC
Q 003887 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SATl 413 (789)
+++-.+||||||-.-+|..-+..+...+.....++-+|+.+.-+
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRL 1276 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRL 1276 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSS
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCH
Confidence 45567899999988777767777888887777777666665543
No 294
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.09 E-value=23 Score=38.83 Aligned_cols=54 Identities=19% Similarity=0.321 Sum_probs=31.8
Q ss_pred CCCCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCCEEEEccCCChhhHH
Q 003887 222 RPVKTFEDCGFSTQLMHAISKQ---GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~---g~~~ptpiQ~~ai~~il~grdvl~~a~TGsGKTla 278 (789)
.|-.+|++++=-+.+.+.|... .+..|--++...++ .-+.+|+.+|+|+|||+.
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~---~prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIK---PPKGVILYGAPGTGKTLL 232 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC---CCSEEEEESSTTTTHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCCCceECCCCchHHHH
Confidence 4567899987555555555432 11222222222111 236899999999999975
No 295
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=48.08 E-value=12 Score=32.16 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=32.6
Q ss_pred CCCcEEEEecccccHHHHHHHHHHcCCc-eeeccCCCCH
Q 003887 469 DDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKDQ 506 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~-v~~lhg~~~~ 506 (789)
...+++|||.+-..+..++..|...|+. +..|.|++..
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHH
Confidence 4568999999988899999999999995 8889998653
No 296
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=47.75 E-value=27 Score=36.93 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=18.4
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHH
Q 003887 261 SGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla~llp~l~~l 287 (789)
....+++.+|+|+|||.. .-+++..
T Consensus 50 ~~~~vll~GppGtGKT~l--a~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLL--AETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHH--HHHHHHH
T ss_pred CCCeEEEECCCCCCHHHH--HHHHHHH
Confidence 346899999999999975 3344444
No 297
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=47.67 E-value=36 Score=34.56 Aligned_cols=17 Identities=41% Similarity=0.591 Sum_probs=15.2
Q ss_pred CCCEEEEccCCChhhHH
Q 003887 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvl~~a~TGsGKTla 278 (789)
...+++.+++|+|||..
T Consensus 50 ~~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEI 66 (310)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 57899999999999975
No 298
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=47.55 E-value=32 Score=40.10 Aligned_cols=74 Identities=15% Similarity=0.257 Sum_probs=53.6
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChH---HHHHHHhc---CCcEEEeCHHHHHHHHhhccccccce
Q 003887 300 IGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKL---DQFKELKA---GCEIVIATPGRLIDMLKMKALTMSRV 373 (789)
Q Consensus 300 ~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~---~~~~~l~~---~~dIiV~Tp~~L~~~l~~~~~~l~~i 373 (789)
..+|+|+|+.-+.++++.+.+. ++.+..+||+.+.. .+...+.. ..+|+|||. .+. ..+++ .+
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~e-~GlDi-~v 390 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AIG-MGLNL-SI 390 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GGG-SSCCC-CB
T ss_pred CCEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HHH-CCcCc-Cc
Confidence 3467799998888877777764 78899999999876 44455553 379999994 333 34567 89
Q ss_pred eEEEEcccchh
Q 003887 374 TYLVLDEADRM 384 (789)
Q Consensus 374 ~~lVlDEah~m 384 (789)
.+||+-.+.+.
T Consensus 391 ~~VI~~~~~k~ 401 (677)
T 3rc3_A 391 RRIIFYSLIKP 401 (677)
T ss_dssp SEEEESCSBC-
T ss_pred cEEEECCcccc
Confidence 99998887654
No 299
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=47.08 E-value=10 Score=36.46 Aligned_cols=18 Identities=28% Similarity=0.233 Sum_probs=15.9
Q ss_pred cCCCEEEEccCCChhhHH
Q 003887 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla 278 (789)
.++.+++++++|||||..
T Consensus 24 ~~~~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTL 41 (199)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 567899999999999976
No 300
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=46.93 E-value=18 Score=32.16 Aligned_cols=37 Identities=14% Similarity=0.242 Sum_probs=32.3
Q ss_pred CCCcEEEEecccccHHHHHHHHHHcCCc-eeeccCCCC
Q 003887 469 DDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKD 505 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~-v~~lhg~~~ 505 (789)
...+++|||.+-..+..++..|...|+. +..|.|++.
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 4568999999988899999999999995 888999875
No 301
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=45.92 E-value=12 Score=39.88 Aligned_cols=20 Identities=40% Similarity=0.469 Sum_probs=17.5
Q ss_pred HHcCCCEEEEccCCChhhHH
Q 003887 259 ILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 259 il~grdvl~~a~TGsGKTla 278 (789)
+..|..++++++||||||..
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 45788999999999999974
No 302
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=45.76 E-value=23 Score=36.04 Aligned_cols=46 Identities=17% Similarity=0.241 Sum_probs=28.8
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHH---------HcCCCEEEEccCCChhhHH
Q 003887 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPII---------LSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 223 pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~ai~~i---------l~grdvl~~a~TGsGKTla 278 (789)
+-.+|.++.-...+.+.|...= ..+.. ...+.+++.+|+|+|||+.
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i----------~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l 70 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMV----------ILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLL 70 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHT----------HHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHH----------HhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHH
Confidence 4467888765666666554320 01110 1247899999999999975
No 303
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=45.57 E-value=10 Score=35.89 Aligned_cols=18 Identities=11% Similarity=0.326 Sum_probs=15.3
Q ss_pred cCCCEEEEccCCChhhHH
Q 003887 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla 278 (789)
.|+-+++++|+|+|||..
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466788999999999975
No 304
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=45.23 E-value=17 Score=42.28 Aligned_cols=70 Identities=16% Similarity=0.378 Sum_probs=49.6
Q ss_pred CcEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeeh-hhh----cc-C-CCCCc
Q 003887 471 GDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA----RG-L-DIKSI 539 (789)
Q Consensus 471 ~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~~----~G-l-DI~~v 539 (789)
+++||.++++.-+......+.+. ++.+..++|+.+...+...+ .. ..+|||+|. .+. .+ + ++..+
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~~-~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQI---VE-NNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHH---HH-TCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHh---cc-CCCEEEECHHHHHHHHhcCcccccccc
Confidence 68999999998888888877765 78999999988643322222 12 478999993 332 23 3 57777
Q ss_pred cEEEE
Q 003887 540 KSVVN 544 (789)
Q Consensus 540 ~~VI~ 544 (789)
++||.
T Consensus 138 ~~vVi 142 (696)
T 2ykg_A 138 TLMIF 142 (696)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88775
No 305
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=44.67 E-value=8.5 Score=35.95 Aligned_cols=17 Identities=29% Similarity=0.292 Sum_probs=14.5
Q ss_pred CCCEEEEccCCChhhHH
Q 003887 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvl~~a~TGsGKTla 278 (789)
++-+++++++|||||.+
T Consensus 3 ~~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGI 19 (178)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45688999999999975
No 306
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=44.55 E-value=20 Score=41.78 Aligned_cols=68 Identities=16% Similarity=0.203 Sum_probs=46.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhc-CCcEEEeCHHHHHHHHhhccccccceeEE
Q 003887 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYL 376 (789)
Q Consensus 298 gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i~~l 376 (789)
+.++||.||++.-+..+++.+++. ++++..++|. .....+..+.. ..+|||||. .+.. .+++. +.+|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaTd-----v~e~-GIDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRK-SYDTEYPKCKNGDWDFVITTD-----ISEM-GANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSS-SHHHHGGGGGTCCCSEEEECG-----GGGT-TCCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChH-HHHHHHHHHHCCCceEEEECc-----hhhc-ceeeC-CcEE
Confidence 567999999999999887777665 7888888884 33333334433 478999993 3333 33455 6665
Q ss_pred E
Q 003887 377 V 377 (789)
Q Consensus 377 V 377 (789)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 5
No 307
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=44.20 E-value=17 Score=39.98 Aligned_cols=83 Identities=11% Similarity=0.174 Sum_probs=56.1
Q ss_pred EEecCCCcchHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCc-eeeccCCCCHHHHHHHHHHhhcCCccEEE
Q 003887 447 VHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKDQASRMEILQKFKSGVYHVLI 525 (789)
Q Consensus 447 ~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~-v~~lhg~~~~~eR~~~l~~F~~G~~~VLV 525 (789)
+...+....|-...+..+... ..++||.|+++.-+....+.|.+.++. +..+||+... ..+|+|
T Consensus 112 ll~~~TGsGKT~~~l~~i~~~--~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-------------~~~Ivv 176 (472)
T 2fwr_A 112 CIVLPTGSGKTHVAMAAINEL--STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPLTV 176 (472)
T ss_dssp EEECCTTSCHHHHHHHHHHHH--CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC-------------CCSEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC-------------cCCEEE
Confidence 334455566655444444332 569999999999999999999888888 9999998752 468999
Q ss_pred eeh-hhhccCC-C-CCccEEEE
Q 003887 526 ATD-VAARGLD-I-KSIKSVVN 544 (789)
Q Consensus 526 aT~-v~~~GlD-I-~~v~~VI~ 544 (789)
+|. .+..-++ + ..+.+||.
T Consensus 177 ~T~~~l~~~~~~~~~~~~liIv 198 (472)
T 2fwr_A 177 STYDSAYVNAEKLGNRFMLLIF 198 (472)
T ss_dssp EEHHHHHHTHHHHTTTCSEEEE
T ss_pred EEcHHHHHHHHHhcCCCCEEEE
Confidence 993 3333221 1 23566664
No 308
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=43.97 E-value=11 Score=39.89 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=14.2
Q ss_pred CCEEEEccCCChhhHHH
Q 003887 263 RDIIGIAKTGSGKTAAF 279 (789)
Q Consensus 263 rdvl~~a~TGsGKTla~ 279 (789)
+-++|++|||+|||...
T Consensus 41 ~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35889999999999763
No 309
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=43.75 E-value=8.3 Score=36.23 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=16.3
Q ss_pred HcCCCEEEEccCCChhhHH
Q 003887 260 LSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 260 l~grdvl~~a~TGsGKTla 278 (789)
..++.+++++++|+|||.+
T Consensus 9 ~~~~~i~i~G~~GsGKst~ 27 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTL 27 (180)
T ss_dssp CCCCCEEEECSTTSSHHHH
T ss_pred ccCCeEEEEeCCCCCHHHH
Confidence 3567899999999999986
No 310
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=43.72 E-value=26 Score=41.54 Aligned_cols=70 Identities=7% Similarity=-0.015 Sum_probs=51.4
Q ss_pred CCCcEEEEecccccHHHHHHHHHH----cCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeeh-hh-----hcc-----
Q 003887 469 DDGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA-----ARG----- 533 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~----~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~-----~~G----- 533 (789)
...+++|.|++..-|.++++.+.. .++.+.++.|+++...|.... .+.|+|+|. .+ ..+
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~~~~ 187 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDNMAFSP 187 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhhccH
Confidence 345899999999988877776644 589999999999986555433 378999994 22 222
Q ss_pred --CCCCCccEEEE
Q 003887 534 --LDIKSIKSVVN 544 (789)
Q Consensus 534 --lDI~~v~~VI~ 544 (789)
+....+.++|.
T Consensus 188 ~~~~~~~l~~lVl 200 (853)
T 2fsf_A 188 EERVQRKLHYALV 200 (853)
T ss_dssp GGCCCCSCCEEEE
T ss_pred hHhcccCCcEEEE
Confidence 55677777774
No 311
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=43.52 E-value=12 Score=35.08 Aligned_cols=18 Identities=33% Similarity=0.266 Sum_probs=15.3
Q ss_pred CCCEEEEccCCChhhHHH
Q 003887 262 GRDIIGIAKTGSGKTAAF 279 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~ 279 (789)
.+.+++++++|||||.+.
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 467899999999999763
No 312
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=43.33 E-value=36 Score=42.44 Aligned_cols=59 Identities=10% Similarity=0.006 Sum_probs=40.5
Q ss_pred CEEEEccCCChhhHHHHHHHHHHHhcCcc----cccCCCCEEEEEcCcHHHHHHHHHHHHHHh
Q 003887 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPE----LQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (789)
Q Consensus 264 dvl~~a~TGsGKTla~llp~l~~l~~~~~----~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~ 322 (789)
..+|.|.-|||||.+...-++..|+.... -..-.-..+|+|+=|+.-|.++.+.+.+..
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 45999999999998755555555553210 000112359999999999999888877653
No 313
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=42.81 E-value=14 Score=35.65 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=17.5
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHH
Q 003887 261 SGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla~llp~l~~l 287 (789)
.++-+++++|+|+|||.. +-+|..+
T Consensus 3 ~g~~i~lvGpsGaGKSTL--l~~L~~~ 27 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL--LKKLFQE 27 (198)
T ss_dssp --CCEEEECCTTSSHHHH--HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHhh
Confidence 467789999999999975 3444443
No 314
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=42.65 E-value=10 Score=34.84 Aligned_cols=15 Identities=33% Similarity=0.352 Sum_probs=13.0
Q ss_pred CEEEEccCCChhhHH
Q 003887 264 DIIGIAKTGSGKTAA 278 (789)
Q Consensus 264 dvl~~a~TGsGKTla 278 (789)
-+++++++|||||.+
T Consensus 3 ~I~l~G~~GsGKsT~ 17 (179)
T 3lw7_A 3 VILITGMPGSGKSEF 17 (179)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367899999999985
No 315
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=42.23 E-value=10 Score=35.58 Aligned_cols=17 Identities=18% Similarity=0.352 Sum_probs=14.8
Q ss_pred CCCEEEEccCCChhhHH
Q 003887 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvl~~a~TGsGKTla 278 (789)
+.-+++++++|||||++
T Consensus 3 ~~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTS 19 (192)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 55688999999999986
No 316
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=42.16 E-value=53 Score=39.26 Aligned_cols=69 Identities=7% Similarity=0.044 Sum_probs=51.6
Q ss_pred CCcEEEEecccccHHHHHHHHHH----cCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeeh-hh-----hc-------
Q 003887 470 DGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA-----AR------- 532 (789)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~----~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~-----~~------- 532 (789)
+.+++|.+++..-|.+.++.+.. .|+.+.++.|+++..+|.... .++|+++|. .+ ..
T Consensus 152 g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m~~~~~ 225 (922)
T 1nkt_A 152 GNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNMAHSLD 225 (922)
T ss_dssp TSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSGG
T ss_pred CCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhhhccHh
Confidence 45899999999988777776654 589999999999987666544 278999994 22 12
Q ss_pred cCCCCCccEEEE
Q 003887 533 GLDIKSIKSVVN 544 (789)
Q Consensus 533 GlDI~~v~~VI~ 544 (789)
.+.+..+.++|.
T Consensus 226 ~l~lr~l~~lIV 237 (922)
T 1nkt_A 226 DLVQRGHHYAIV 237 (922)
T ss_dssp GCCCCCCCEEEE
T ss_pred hhccCCCCEEEE
Confidence 366677777774
No 317
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=41.66 E-value=37 Score=30.81 Aligned_cols=37 Identities=8% Similarity=0.081 Sum_probs=31.4
Q ss_pred CCCcEEEEecccccHHHHHHHHHHcCC-ceeeccCCCC
Q 003887 469 DDGDVLVFASKKTTVDEIESQLAQKGF-KAAALHGDKD 505 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~-~v~~lhg~~~ 505 (789)
...+++|||.+-..+..++..|...|+ ++..|.|++.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 456899999998888999999999999 5889999874
No 318
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=41.32 E-value=16 Score=33.75 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=17.8
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHH
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l 287 (789)
+..+++++++|||||+. +-+|...
T Consensus 4 ~~~i~l~G~~GsGKSTl--~~~La~~ 27 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTI--GRQLAQQ 27 (173)
T ss_dssp CCCEEEECCTTSCHHHH--HHHHHHH
T ss_pred CCeEEEECCCCCCHHHH--HHHHHHH
Confidence 46789999999999975 3444443
No 319
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=41.29 E-value=17 Score=45.12 Aligned_cols=65 Identities=15% Similarity=0.123 Sum_probs=50.0
Q ss_pred CCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEee-----hhhhccC-CCCCccEE
Q 003887 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT-----DVAARGL-DIKSIKSV 542 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT-----~v~~~Gl-DI~~v~~V 542 (789)
...++||.++++.-+..++..|......+..++|+++ .++..+|||+| +.+.++- .+..+.+|
T Consensus 226 ~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lV 294 (1108)
T 3l9o_A 226 NKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVMREVAWV 294 (1108)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEE
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCccccccCCEE
Confidence 4568999999999999999999887668999999987 34568899999 3444442 35566666
Q ss_pred EE
Q 003887 543 VN 544 (789)
Q Consensus 543 I~ 544 (789)
|+
T Consensus 295 VI 296 (1108)
T 3l9o_A 295 IF 296 (1108)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 320
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=40.84 E-value=2.3e+02 Score=26.56 Aligned_cols=127 Identities=11% Similarity=-0.004 Sum_probs=46.6
Q ss_pred HcCCCEEEEccCCChhhHHHHHHHHHHHhcCcc-----cccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCc-EEEEEE
Q 003887 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPE-----LQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGI-RVSAVY 333 (789)
Q Consensus 260 l~grdvl~~a~TGsGKTla~llp~l~~l~~~~~-----~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i-~v~~~~ 333 (789)
+.|-.+-+....|-|=|+.+.+|+......... .....+.++|||-........+...+..+ ++ .+..+
T Consensus 18 ~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~----g~~~v~~a- 92 (206)
T 3mm4_A 18 SHMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKM----GVSEVEQC- 92 (206)
T ss_dssp -------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHT----TCSEEEEE-
T ss_pred ccCCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHc----CCCeeeee-
Confidence 444566677888999998888886433211110 01123457888888766665554444443 44 33322
Q ss_pred cCCChHHHHHHHhcCCcEEEeCHHHHHHHHhhc--------cccccceeEEEEcccchhccCCChHHHHHHHhh---cCC
Q 003887 334 GGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK--------ALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQ---IRP 402 (789)
Q Consensus 334 gg~~~~~~~~~l~~~~dIiV~Tp~~L~~~l~~~--------~~~l~~i~~lVlDEah~m~~~~f~~~i~~il~~---~~~ 402 (789)
.+....+..+... ...-..+++||+|= .|.+++-...+..+... ..+
T Consensus 93 --------------------~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~--~lp~~~G~el~~~lr~~~~~~~~ 150 (206)
T 3mm4_A 93 --------------------DSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDC--QMPEMDGYEATREIRKVEKSYGV 150 (206)
T ss_dssp --------------------SSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEES--CCSSSCHHHHHHHHHHHHHTTTC
T ss_pred --------------------CCHHHHHHHHHhhcccccccccccCCCCCEEEEcC--CCCCCCHHHHHHHHHhhhhhcCC
Confidence 2233333333321 11123577899883 23333322333333332 246
Q ss_pred CceEEEEeccC
Q 003887 403 DRQTLLFSATM 413 (789)
Q Consensus 403 ~~q~ll~SATl 413 (789)
...+|++|+..
T Consensus 151 ~~piI~ls~~~ 161 (206)
T 3mm4_A 151 RTPIIAVSGHD 161 (206)
T ss_dssp CCCEEEEESSC
T ss_pred CCcEEEEECCC
Confidence 77899999976
No 321
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=40.49 E-value=27 Score=36.14 Aligned_cols=18 Identities=22% Similarity=0.374 Sum_probs=15.7
Q ss_pred cCCCEEEEccCCChhhHH
Q 003887 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla 278 (789)
....+++.+++|+|||..
T Consensus 24 ~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELV 41 (304)
T ss_dssp TTSCEEEESCTTSCHHHH
T ss_pred CCCcEEEECCCCchHHHH
Confidence 457899999999999975
No 322
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=40.45 E-value=15 Score=35.67 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=15.0
Q ss_pred cCCCEEEEccCCChhhHH
Q 003887 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla 278 (789)
.|+-+++++|+|+|||..
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 456688899999999975
No 323
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=40.19 E-value=14 Score=37.18 Aligned_cols=14 Identities=36% Similarity=0.223 Sum_probs=12.6
Q ss_pred EEEEccCCChhhHH
Q 003887 265 IIGIAKTGSGKTAA 278 (789)
Q Consensus 265 vl~~a~TGsGKTla 278 (789)
+++++++|||||..
T Consensus 4 i~I~G~~GSGKSTl 17 (253)
T 2ze6_A 4 HLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCcCHHHH
Confidence 67899999999975
No 324
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=40.12 E-value=13 Score=36.34 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=14.9
Q ss_pred cCCCEEEEccCCChhhHH
Q 003887 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla 278 (789)
.++-+++.++||+|||..
T Consensus 33 ~g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSET 50 (205)
T ss_dssp TTEEEEEECCCTTTTHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 345689999999999965
No 325
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=39.97 E-value=43 Score=33.17 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=32.1
Q ss_pred CCCCCcccCCCCHHHHHHHHHcC--CCCCcHHHHHHHHHHH--cCCCEEEEccCCChhhHHHHHHHHHHH
Q 003887 222 RPVKTFEDCGFSTQLMHAISKQG--YEKPTSIQCQALPIIL--SGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~g--~~~ptpiQ~~ai~~il--~grdvl~~a~TGsGKTla~llp~l~~l 287 (789)
.|-.+|+++.-.+.....++..- |.. ...+..+- -.+.+++.+|+|+|||.. +-++...
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~~~~-----~~~~~~~~~~~~~g~ll~G~~G~GKTtl--~~~i~~~ 72 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEFLKN-----PSRFHEMGARIPKGVLLVGPPGVGKTHL--ARAVAGE 72 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHHHHC-----HHHHHHTTCCCCSEEEEECCTTSSHHHH--HHHHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHHC-----HHHHHHcCCCCCCeEEEECCCCCCHHHH--HHHHHHH
Confidence 34567888866666555554321 111 11121110 124589999999999964 3344443
No 326
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=39.90 E-value=14 Score=35.38 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=15.9
Q ss_pred HcCCCEEEEccCCChhhHH
Q 003887 260 LSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 260 l~grdvl~~a~TGsGKTla 278 (789)
..|.-+++++++|||||+.
T Consensus 4 ~~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp CCCCEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3566788999999999975
No 327
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=39.37 E-value=13 Score=35.82 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=16.7
Q ss_pred HHcCCCEEEEccCCChhhHH
Q 003887 259 ILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 259 il~grdvl~~a~TGsGKTla 278 (789)
+..++-+++++++|+|||..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTL 28 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHH
T ss_pred cccCCEEEEECCCCCCHHHH
Confidence 34567899999999999975
No 328
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=39.12 E-value=15 Score=38.49 Aligned_cols=16 Identities=44% Similarity=0.399 Sum_probs=13.3
Q ss_pred CEEEEccCCChhhHHH
Q 003887 264 DIIGIAKTGSGKTAAF 279 (789)
Q Consensus 264 dvl~~a~TGsGKTla~ 279 (789)
-+++++|||+|||..+
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3678999999999753
No 329
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=38.99 E-value=87 Score=31.65 Aligned_cols=95 Identities=18% Similarity=0.236 Sum_probs=58.8
Q ss_pred cCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHH---HHHHh
Q 003887 270 KTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ---FKELK 346 (789)
Q Consensus 270 ~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~---~~~l~ 346 (789)
...++|..+ ++-++..+.. .+.++||.+.++..+..+...+.+. .++.+..++|+.+..+. +..+.
T Consensus 92 ~~~s~K~~~-L~~ll~~~~~-------~~~kvlIFs~~~~~~~~l~~~L~~~---~g~~~~~l~G~~~~~~R~~~i~~F~ 160 (271)
T 1z5z_A 92 VRRSGKMIR-TMEIIEEALD-------EGDKIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYGELSKKERDDIISKFQ 160 (271)
T ss_dssp STTCHHHHH-HHHHHHHHHH-------TTCCEEEEESCHHHHHHHHHHHHHH---HCSCCCEECTTSCHHHHHHHHHHHH
T ss_pred cccCHHHHH-HHHHHHHHHh-------CCCeEEEEeccHHHHHHHHHHHHHh---cCCcEEEEECCCCHHHHHHHHHHhc
Confidence 346789864 5555655432 3567999999998888777766653 26788889998875433 33344
Q ss_pred cC--Cc-EEEeCHHHHHHHHhhccccccceeEEEEccc
Q 003887 347 AG--CE-IVIATPGRLIDMLKMKALTMSRVTYLVLDEA 381 (789)
Q Consensus 347 ~~--~d-IiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEa 381 (789)
.+ +. ++++|- . -...+++..+++||+=+.
T Consensus 161 ~~~~~~v~L~st~-~-----~g~Glnl~~a~~VI~~d~ 192 (271)
T 1z5z_A 161 NNPSVKFIVLSVK-A-----GGFGINLTSANRVIHFDR 192 (271)
T ss_dssp HCTTCCEEEEECC-T-----TCCCCCCTTCSEEEECSC
T ss_pred CCCCCCEEEEehh-h-----hcCCcCcccCCEEEEECC
Confidence 43 44 556662 1 123456777777665433
No 330
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=38.67 E-value=21 Score=37.28 Aligned_cols=14 Identities=29% Similarity=0.299 Sum_probs=12.4
Q ss_pred EEEEccCCChhhHH
Q 003887 265 IIGIAKTGSGKTAA 278 (789)
Q Consensus 265 vl~~a~TGsGKTla 278 (789)
+++.++.|+|||+.
T Consensus 7 ~~i~G~~GaGKTTl 20 (318)
T 1nij_A 7 TLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEESSSSSCHHH
T ss_pred EEEEecCCCCHHHH
Confidence 67899999999975
No 331
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=38.64 E-value=31 Score=37.98 Aligned_cols=16 Identities=38% Similarity=0.557 Sum_probs=14.6
Q ss_pred CCEEEEccCCChhhHH
Q 003887 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvl~~a~TGsGKTla 278 (789)
+.+|+.+|+|+|||..
T Consensus 64 ~~iLl~GppGtGKT~l 79 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTAL 79 (456)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CeEEEECCCcCCHHHH
Confidence 6799999999999975
No 332
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=38.51 E-value=20 Score=36.19 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=20.4
Q ss_pred HHHcCCCEEEEccCCChhhHHHHHHHHHH
Q 003887 258 IILSGRDIIGIAKTGSGKTAAFVLPMIVH 286 (789)
Q Consensus 258 ~il~grdvl~~a~TGsGKTla~llp~l~~ 286 (789)
..+.++.+++++++|+|||.+ .-+|..
T Consensus 44 ~~l~g~~i~l~G~~GsGKSTl--~~~La~ 70 (250)
T 3nwj_A 44 PYLNGRSMYLVGMMGSGKTTV--GKIMAR 70 (250)
T ss_dssp HHHTTCCEEEECSTTSCHHHH--HHHHHH
T ss_pred hhcCCCEEEEECCCCCCHHHH--HHHHHH
Confidence 344589999999999999975 334444
No 333
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=38.49 E-value=16 Score=38.43 Aligned_cols=20 Identities=45% Similarity=0.611 Sum_probs=17.3
Q ss_pred HHcCCCEEEEccCCChhhHH
Q 003887 259 ILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 259 il~grdvl~~a~TGsGKTla 278 (789)
+..|..++++++||||||+.
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 34788999999999999974
No 334
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A {Vibrio fischeri} PDB: 3pvz_A*
Probab=37.95 E-value=2.1e+02 Score=30.34 Aligned_cols=90 Identities=10% Similarity=0.095 Sum_probs=55.4
Q ss_pred HHHHHHHHcCCCEEEEccCCC-hhhHHHHHHHHHHHhcCcccccCCCC-EEEEEcCcHHHHHHHHHHHHHHhhhcCcEEE
Q 003887 253 CQALPIILSGRDIIGIAKTGS-GKTAAFVLPMIVHIMDQPELQKEEGP-IGVICAPTRELAHQIYLETKKFAKSHGIRVS 330 (789)
Q Consensus 253 ~~ai~~il~grdvl~~a~TGs-GKTla~llp~l~~l~~~~~~~~~~gp-~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~ 330 (789)
...+...+.++.+|+.+.||. |.-++ ..++. .++ .++++.-...-..++..++.......+..+.
T Consensus 26 ~~~~~~~~~~k~vLVTGatG~IG~~l~------~~L~~-------~g~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~v~ 92 (399)
T 3nzo_A 26 EKELQSVVSQSRFLVLGGAGSIGQAVT------KEIFK-------RNPQKLHVVDISENNMVELVRDIRSSFGYINGDFQ 92 (399)
T ss_dssp HHHHHHHHHTCEEEEETTTSHHHHHHH------HHHHT-------TCCSEEEEECSCHHHHHHHHHHHHHHTCCCSSEEE
T ss_pred HHHHHHHhCCCEEEEEcCChHHHHHHH------HHHHH-------CCCCEEEEEECCcchHHHHHHHHHHhcCCCCCcEE
Confidence 344566778999999999885 76654 33322 243 5666666655555665666554332345677
Q ss_pred EEEcCCChHHHHHHHh--cCCcEEEeC
Q 003887 331 AVYGGMSKLDQFKELK--AGCEIVIAT 355 (789)
Q Consensus 331 ~~~gg~~~~~~~~~l~--~~~dIiV~T 355 (789)
.+.+..........+. .++|+||-.
T Consensus 93 ~~~~Dl~d~~~~~~~~~~~~~D~Vih~ 119 (399)
T 3nzo_A 93 TFALDIGSIEYDAFIKADGQYDYVLNL 119 (399)
T ss_dssp EECCCTTSHHHHHHHHHCCCCSEEEEC
T ss_pred EEEEeCCCHHHHHHHHHhCCCCEEEEC
Confidence 7777777665555443 467887754
No 335
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=37.92 E-value=25 Score=31.67 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=32.6
Q ss_pred CCCcEEEEecccccHHHHHHHHHHcCC-ceeeccCCCC
Q 003887 469 DDGDVLVFASKKTTVDEIESQLAQKGF-KAAALHGDKD 505 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~-~v~~lhg~~~ 505 (789)
...+++|||.+-..+...+..|...|+ ++..|.|++.
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 456899999999899999999999999 5889999864
No 336
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=37.90 E-value=12 Score=35.04 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=15.1
Q ss_pred cCCCEEEEccCCChhhHH
Q 003887 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla 278 (789)
.+..+++++++|||||++
T Consensus 3 ~g~~I~l~G~~GsGKST~ 20 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQ 20 (186)
T ss_dssp CEEEEEEECCTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345688999999999986
No 337
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=37.73 E-value=17 Score=34.27 Aligned_cols=18 Identities=33% Similarity=0.551 Sum_probs=15.4
Q ss_pred cCCCEEEEccCCChhhHH
Q 003887 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla 278 (789)
.+..+++++++|||||.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 9 KGINILITGTPGTGKTSM 26 (184)
T ss_dssp SSCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 356799999999999975
No 338
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=37.66 E-value=14 Score=38.69 Aligned_cols=15 Identities=27% Similarity=0.253 Sum_probs=13.0
Q ss_pred CEEEEccCCChhhHH
Q 003887 264 DIIGIAKTGSGKTAA 278 (789)
Q Consensus 264 dvl~~a~TGsGKTla 278 (789)
-+++++|||+|||..
T Consensus 5 ~i~i~GptgsGKt~l 19 (322)
T 3exa_A 5 LVAIVGPTAVGKTKT 19 (322)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCcCCHHHH
Confidence 467899999999976
No 339
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=37.61 E-value=15 Score=34.95 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=18.3
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHH
Q 003887 261 SGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla~llp~l~~l 287 (789)
.|.-+.+.+|+|+|||+. +-+|..+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl--~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL--VRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHH--HHHHHHH
T ss_pred CCcEEEEECcCCCCHHHH--HHHHHhh
Confidence 566688899999999975 4444444
No 340
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=37.59 E-value=20 Score=32.67 Aligned_cols=37 Identities=16% Similarity=0.346 Sum_probs=32.2
Q ss_pred CCCcEEEEeccc--ccHHHHHHHHHHcCCceeeccCCCC
Q 003887 469 DDGDVLVFASKK--TTVDEIESQLAQKGFKAAALHGDKD 505 (789)
Q Consensus 469 ~~~kvLVF~~s~--~~a~~l~~~L~~~g~~v~~lhg~~~ 505 (789)
...+++|||.+- ..+..++..|...|+++..|.|++.
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 456899999987 6889999999999999999999865
No 341
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=37.40 E-value=15 Score=34.70 Aligned_cols=18 Identities=28% Similarity=0.446 Sum_probs=15.3
Q ss_pred cCCCEEEEccCCChhhHH
Q 003887 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla 278 (789)
.|.-+++++++|+|||+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp TTEEEEEEECTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456788999999999975
No 342
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=37.06 E-value=23 Score=37.87 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=18.7
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003887 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ai~~il~grdv--l~~a~TGsGKTla 278 (789)
.+..++.|.|+ +..++||||||..
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyT 121 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYT 121 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEE
Confidence 46677888874 4568999999976
No 343
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=37.02 E-value=23 Score=38.86 Aligned_cols=68 Identities=16% Similarity=0.155 Sum_probs=45.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhc-CCcEEEeCHHHHHHHHhhccccccceeEE
Q 003887 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYL 376 (789)
Q Consensus 298 gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i~~l 376 (789)
+.++||.||++.-|.++++.+++. ++.+..+++... ...+..+.. ..+|+|||. .+.. .+++.. .+|
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~-~~~~~~f~~g~~~vLVaT~-----v~~~-GiDip~-~~V 255 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTF-DTEYPKTKLTDWDFVVTTD-----ISEM-GANFRA-GRV 255 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTH-HHHGGGGGSSCCSEEEECG-----GGGS-SCCCCC-SEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHH-HHHHHhhccCCceEEEECC-----HHHh-CcCCCC-CEE
Confidence 346899999999999888777664 778888877543 233333333 479999993 3333 334555 555
Q ss_pred E
Q 003887 377 V 377 (789)
Q Consensus 377 V 377 (789)
|
T Consensus 256 I 256 (451)
T 2jlq_A 256 I 256 (451)
T ss_dssp E
T ss_pred E
Confidence 4
No 344
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=36.87 E-value=16 Score=39.11 Aligned_cols=19 Identities=32% Similarity=0.282 Sum_probs=15.8
Q ss_pred HcCCCEEEEccCCChhhHH
Q 003887 260 LSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 260 l~grdvl~~a~TGsGKTla 278 (789)
..+..++++++||||||..
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3566788999999999975
No 345
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=36.86 E-value=39 Score=33.43 Aligned_cols=65 Identities=12% Similarity=0.214 Sum_probs=47.2
Q ss_pred EecCCCcchHHHHHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCc-eeeccCCCCHHHHHHHHHHhhcCCccEEEe
Q 003887 448 HVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKDQASRMEILQKFKSGVYHVLIA 526 (789)
Q Consensus 448 ~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~-v~~lhg~~~~~eR~~~l~~F~~G~~~VLVa 526 (789)
...+....|-...+..+... ..++||+|+++.-+..+.+.+.+.++. +..++|+.. ....|+|+
T Consensus 113 l~~~tG~GKT~~a~~~~~~~--~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v~ 177 (237)
T 2fz4_A 113 IVLPTGSGKTHVAMAAINEL--STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTVS 177 (237)
T ss_dssp EEESSSTTHHHHHHHHHHHS--CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEEE
T ss_pred EEeCCCCCHHHHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEEE
Confidence 33445566655544444332 568999999999999999888887888 888888764 25689999
Q ss_pred e
Q 003887 527 T 527 (789)
Q Consensus 527 T 527 (789)
|
T Consensus 178 T 178 (237)
T 2fz4_A 178 T 178 (237)
T ss_dssp E
T ss_pred e
Confidence 9
No 346
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=36.58 E-value=15 Score=34.15 Aligned_cols=15 Identities=40% Similarity=0.463 Sum_probs=13.0
Q ss_pred CEEEEccCCChhhHH
Q 003887 264 DIIGIAKTGSGKTAA 278 (789)
Q Consensus 264 dvl~~a~TGsGKTla 278 (789)
-+++++++|||||..
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 378899999999985
No 347
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=36.15 E-value=27 Score=37.07 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=18.1
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHH
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l 287 (789)
|+-+++.+++|+|||.. ++.++..+
T Consensus 61 G~iv~I~G~pGsGKTtL-al~la~~~ 85 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTV-ALHAVANA 85 (349)
T ss_dssp TSEEEEEESTTSSHHHH-HHHHHHHH
T ss_pred CeEEEEECCCCCCHHHH-HHHHHHHH
Confidence 46688999999999985 34444444
No 348
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=36.09 E-value=64 Score=38.70 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=42.9
Q ss_pred CCCcEEEEecccccHHHHHHHHHH----cCCceeeccCCCCHHHHHHHHHHhhcCCccEEEeeh
Q 003887 469 DDGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD 528 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~----~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~ 528 (789)
.+.+++|.+++..-|.+.++.+.. .++.+.++.|+++..+|..+. .++|+|+|.
T Consensus 119 ~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 119 TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 345899999999888777766654 589999999999987766654 378999994
No 349
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=36.07 E-value=32 Score=47.02 Aligned_cols=54 Identities=11% Similarity=0.253 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHH-HH---HHHHcCCCEEEEccCCChhhHHHHHHHHHHHh
Q 003887 232 FSTQLMHAISKQGYEKPTSIQCQ-AL---PIILSGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (789)
Q Consensus 232 l~~~l~~~l~~~g~~~ptpiQ~~-ai---~~il~grdvl~~a~TGsGKTla~llp~l~~l~ 288 (789)
|...+.+.+.+.|+. |++.+.. ++ ..+...+.++++||||+|||.++- +|...+
T Consensus 873 l~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~--~L~~al 930 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE--VYLEAI 930 (3245)
T ss_dssp HHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH--HHHHHH
Confidence 345566677777774 5554433 33 333455678999999999998743 444444
No 350
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=35.98 E-value=17 Score=35.23 Aligned_cols=19 Identities=16% Similarity=0.394 Sum_probs=16.1
Q ss_pred HcCCCEEEEccCCChhhHH
Q 003887 260 LSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 260 l~grdvl~~a~TGsGKTla 278 (789)
+.++-+++++|+|+|||..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp CSCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECcCCCCHHHH
Confidence 3567789999999999975
No 351
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=35.90 E-value=28 Score=34.59 Aligned_cols=17 Identities=35% Similarity=0.380 Sum_probs=14.2
Q ss_pred CEEEEccCCChhhHHHH
Q 003887 264 DIIGIAKTGSGKTAAFV 280 (789)
Q Consensus 264 dvl~~a~TGsGKTla~l 280 (789)
++++.++.|+|||...+
T Consensus 8 ~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAML 24 (228)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 57889999999998643
No 352
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=35.85 E-value=54 Score=28.05 Aligned_cols=52 Identities=10% Similarity=0.125 Sum_probs=35.8
Q ss_pred hcCCCCCCCcEEEEecc------cccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHH
Q 003887 463 KLPGMIDDGDVLVFASK------KTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQ 514 (789)
Q Consensus 463 ~L~~~~~~~kvLVF~~s------~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~ 514 (789)
.+.......+++||..+ --.|..+...|.+.++.+..++=......+..+.+
T Consensus 10 ~v~~~i~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~ 67 (109)
T 3ipz_A 10 TLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKE 67 (109)
T ss_dssp HHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH
T ss_pred HHHHHHccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHH
Confidence 33334456799999874 77899999999999988776654444444444443
No 353
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=35.71 E-value=28 Score=37.07 Aligned_cols=37 Identities=24% Similarity=0.239 Sum_probs=24.1
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcC
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP 306 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~P 306 (789)
++-+++.+++|+|||..+ +.++..+... +..++++..
T Consensus 63 G~ii~I~G~pGsGKTtLa-l~la~~~~~~-------g~~vlyid~ 99 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLT-LQVIAAAQRE-------GKTCAFIDA 99 (356)
T ss_dssp TSEEEEECSTTSSHHHHH-HHHHHHHHHT-------TCCEEEEES
T ss_pred CeEEEEECCCCCCHHHHH-HHHHHHHHHC-------CCeEEEEeC
Confidence 466889999999999864 4444444322 334666654
No 354
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=35.69 E-value=25 Score=36.95 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=18.5
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003887 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ai~~il~grdv--l~~a~TGsGKTla 278 (789)
.+..++.|.++ +..++||||||..
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyT 94 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHT 94 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceE
Confidence 45667788774 5568999999976
No 355
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=35.66 E-value=17 Score=38.29 Aligned_cols=16 Identities=38% Similarity=0.607 Sum_probs=14.5
Q ss_pred CCEEEEccCCChhhHH
Q 003887 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvl~~a~TGsGKTla 278 (789)
+.+++.+|+|+|||..
T Consensus 71 ~~vLl~GppGtGKT~l 86 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAI 86 (368)
T ss_dssp CEEEEEESTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5799999999999975
No 356
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=35.63 E-value=1.9e+02 Score=30.17 Aligned_cols=15 Identities=27% Similarity=0.268 Sum_probs=13.1
Q ss_pred CEEEEccCCChhhHH
Q 003887 264 DIIGIAKTGSGKTAA 278 (789)
Q Consensus 264 dvl~~a~TGsGKTla 278 (789)
.+++++.+|+|||..
T Consensus 81 ~I~i~G~~G~GKSTl 95 (355)
T 3p32_A 81 RVGITGVPGVGKSTA 95 (355)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999975
No 357
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=35.24 E-value=22 Score=34.69 Aligned_cols=27 Identities=11% Similarity=0.159 Sum_probs=18.9
Q ss_pred HHcCCCEEEEccCCChhhHHHHHHHHHHH
Q 003887 259 ILSGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 259 il~grdvl~~a~TGsGKTla~llp~l~~l 287 (789)
+..|+-+.+++|+|+|||.. +-+|..+
T Consensus 20 i~~G~~~~lvGpsGsGKSTL--l~~L~g~ 46 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTL--IKKLLNE 46 (218)
T ss_dssp --CCCCEEEECSTTSSHHHH--HHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHH--HHHHHhh
Confidence 34678899999999999974 3344443
No 358
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=34.88 E-value=42 Score=38.60 Aligned_cols=68 Identities=16% Similarity=0.159 Sum_probs=46.3
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhc-CCcEEEeCHHHHHHHHhhccccccceeEE
Q 003887 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYL 376 (789)
Q Consensus 298 gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i~~l 376 (789)
+.++||.|+|+.-|..+++.+++. ++++..++|. .....+..+.. ...|||||. .+... +++. +++|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~-~R~~~l~~F~~g~~~VLVaTd-----v~~rG-iDi~-v~~V 422 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRK-TFDTEYPKTKLTDWDFVVTTD-----ISEMG-ANFR-AGRV 422 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTT-THHHHTTHHHHSCCSEEEECG-----GGGTT-CCCC-CSEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChH-HHHHHHHhhcCCCcEEEEECc-----HHHcC-cccC-ceEE
Confidence 446999999999999988887765 7888888874 33334444443 478999994 33333 3443 6655
Q ss_pred E
Q 003887 377 V 377 (789)
Q Consensus 377 V 377 (789)
|
T Consensus 423 I 423 (618)
T 2whx_A 423 I 423 (618)
T ss_dssp E
T ss_pred E
Confidence 4
No 359
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=34.82 E-value=27 Score=37.91 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=19.3
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003887 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ai~~il~grdv--l~~a~TGsGKTla 278 (789)
.+..++.|.++ +..++||||||..
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyT 157 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFT 157 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceE
Confidence 57778899875 4568999999976
No 360
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=34.74 E-value=19 Score=37.88 Aligned_cols=15 Identities=33% Similarity=0.392 Sum_probs=13.3
Q ss_pred CEEEEccCCChhhHH
Q 003887 264 DIIGIAKTGSGKTAA 278 (789)
Q Consensus 264 dvl~~a~TGsGKTla 278 (789)
.++++++||+|||..
T Consensus 7 ~i~i~GptGsGKTtl 21 (323)
T 3crm_A 7 AIFLMGPTAAGKTDL 21 (323)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999975
No 361
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=34.74 E-value=20 Score=32.86 Aligned_cols=15 Identities=20% Similarity=-0.106 Sum_probs=13.1
Q ss_pred CEEEEccCCChhhHH
Q 003887 264 DIIGIAKTGSGKTAA 278 (789)
Q Consensus 264 dvl~~a~TGsGKTla 278 (789)
-++++++.|||||++
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999975
No 362
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=34.68 E-value=27 Score=37.22 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=24.8
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCc
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PT 307 (789)
|.-+++.+++|+|||.. ++.++..+.. .+..++++..-
T Consensus 61 G~i~~I~GppGsGKSTL-al~la~~~~~-------~gg~VlyId~E 98 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTL-ALHAIAEAQK-------MGGVAAFIDAE 98 (356)
T ss_dssp TEEEEEEESTTSSHHHH-HHHHHHHHHH-------TTCCEEEEESS
T ss_pred CcEEEEECCCCCCHHHH-HHHHHHHHHh-------cCCeEEEEecc
Confidence 45678899999999974 4555554432 23446776554
No 363
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=34.67 E-value=25 Score=37.35 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=18.3
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003887 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ai~~il~grdv--l~~a~TGsGKTla 278 (789)
.+..++.|.++ +..++||||||..
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyT 111 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYS 111 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeE
Confidence 45666788774 5568999999976
No 364
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=34.65 E-value=54 Score=28.27 Aligned_cols=48 Identities=8% Similarity=0.142 Sum_probs=34.0
Q ss_pred CCCCCcEEEEec------ccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHH
Q 003887 467 MIDDGDVLVFAS------KKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQ 514 (789)
Q Consensus 467 ~~~~~kvLVF~~------s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~ 514 (789)
.....+|+||.. .--.|..+...|...++.+..+.=..+...+..+.+
T Consensus 12 ~i~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~ 65 (111)
T 3zyw_A 12 LTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKA 65 (111)
T ss_dssp HHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH
T ss_pred HHhcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHH
Confidence 345679999994 566789999999999988776654445555544443
No 365
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=34.56 E-value=29 Score=33.56 Aligned_cols=17 Identities=35% Similarity=0.354 Sum_probs=13.9
Q ss_pred CEEEEccCCChhhHHHH
Q 003887 264 DIIGIAKTGSGKTAAFV 280 (789)
Q Consensus 264 dvl~~a~TGsGKTla~l 280 (789)
-.++.|+.|||||+.++
T Consensus 7 i~l~tG~pGsGKT~~a~ 23 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMV 23 (199)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 36889999999998643
No 366
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=34.50 E-value=21 Score=30.42 Aligned_cols=37 Identities=19% Similarity=0.399 Sum_probs=31.6
Q ss_pred CCCcEEEEecccccHHHHHHHHHHcCCc-eeeccCCCC
Q 003887 469 DDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKD 505 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~-v~~lhg~~~ 505 (789)
...+++|||.+-..+..++..|...|+. +..|.|++.
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 3568999999988899999999999995 888988764
No 367
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=34.31 E-value=40 Score=37.75 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=19.3
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHH
Q 003887 261 SGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla~llp~l~~l 287 (789)
.+.++++++.||||||.+ +-.++..+
T Consensus 166 ~~pHlLIaG~TGSGKSt~-L~~li~sL 191 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVG-VNAMILSM 191 (512)
T ss_dssp GSCSEEEECCTTSSHHHH-HHHHHHHH
T ss_pred cCceEEEECCCCCCHHHH-HHHHHHHH
Confidence 457899999999999985 44444433
No 368
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=34.14 E-value=23 Score=33.39 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=16.7
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHH
Q 003887 263 RDIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 263 rdvl~~a~TGsGKTla~llp~l~~l 287 (789)
+-+.+++|+|+|||.. +-+|..+
T Consensus 2 ~ii~l~GpsGaGKsTl--~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL--LKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHH--HHHHHHH
T ss_pred CEEEEECCCCCCHHHH--HHHHHhh
Confidence 4578899999999974 4444444
No 369
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=33.66 E-value=26 Score=38.11 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=18.2
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003887 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ai~~il~grdv--l~~a~TGsGKTla 278 (789)
.+..++.|.++ +..++||||||..
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyT 171 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHT 171 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeE
Confidence 45667788764 5568999999976
No 370
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=33.66 E-value=78 Score=36.80 Aligned_cols=76 Identities=17% Similarity=0.190 Sum_probs=51.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhh--------------------------------cCcEEEEEEcCCChHHHHHHH
Q 003887 298 GPIGVICAPTRELAHQIYLETKKFAKS--------------------------------HGIRVSAVYGGMSKLDQFKEL 345 (789)
Q Consensus 298 gp~vLIl~PTreLa~Qi~~~~~k~~~~--------------------------------~~i~v~~~~gg~~~~~~~~~l 345 (789)
+..+||.||++.-+..++..+.+.... ....+..++++.+..++....
T Consensus 252 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~ 331 (715)
T 2va8_A 252 NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIE 331 (715)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHH
Confidence 456899999999999998888764321 123478889998876553322
Q ss_pred ---h-cCCcEEEeCHHHHHHHHhhccccccceeEEEEc
Q 003887 346 ---K-AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLD 379 (789)
Q Consensus 346 ---~-~~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlD 379 (789)
. ....|||||. .+ ...+++..+.+||.+
T Consensus 332 ~~f~~g~~~vlvaT~-----~l-~~Gidip~~~~VI~~ 363 (715)
T 2va8_A 332 EGFRQRKIKVIVATP-----TL-AAGVNLPARTVIIGD 363 (715)
T ss_dssp HHHHTTCSCEEEECG-----GG-GGSSCCCBSEEEECC
T ss_pred HHHHcCCCeEEEECh-----HH-hcccCCCceEEEEeC
Confidence 2 2478999993 22 234567778776643
No 371
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=33.64 E-value=28 Score=36.63 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=19.0
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003887 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ai~~il~grdv--l~~a~TGsGKTla 278 (789)
.+..++.|.++ +..++||||||..
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyT 97 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYT 97 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEE
Confidence 56777888874 4568999999965
No 372
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=33.60 E-value=19 Score=34.57 Aligned_cols=16 Identities=31% Similarity=0.522 Sum_probs=14.1
Q ss_pred CCEEEEccCCChhhHH
Q 003887 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvl~~a~TGsGKTla 278 (789)
|-++++||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999975
No 373
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=33.49 E-value=25 Score=37.57 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=18.3
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003887 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ai~~il~grdv--l~~a~TGsGKTla 278 (789)
.+..++.|.++ +..++||||||..
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyT 106 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYT 106 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceE
Confidence 45667888774 4568999999965
No 374
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=33.27 E-value=22 Score=33.94 Aligned_cols=18 Identities=33% Similarity=0.575 Sum_probs=15.3
Q ss_pred cCCCEEEEccCCChhhHH
Q 003887 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla 278 (789)
.+.-+++++++|||||..
T Consensus 28 ~g~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTI 45 (200)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456788999999999975
No 375
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=33.24 E-value=29 Score=36.89 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=18.2
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003887 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ai~~il~grdv--l~~a~TGsGKTla 278 (789)
.+..++.|.++ +..++||||||..
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyT 106 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWT 106 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEE
Confidence 35567788774 4568999999975
No 376
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=33.17 E-value=29 Score=37.13 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=18.3
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003887 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ai~~il~grdv--l~~a~TGsGKTla 278 (789)
.+..++.|.++ +..++||||||..
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyT 101 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHT 101 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceE
Confidence 45667788774 4568999999976
No 377
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=33.15 E-value=29 Score=37.06 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=18.6
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003887 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ai~~il~grdv--l~~a~TGsGKTla 278 (789)
++..++.|.++ +..++||||||..
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceE
Confidence 46667888875 4468999999966
No 378
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=33.01 E-value=80 Score=35.69 Aligned_cols=80 Identities=13% Similarity=0.138 Sum_probs=51.2
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHHhhh----cCcEEEEEEcCCCh--HHHHHHHhcC-Cc---EEEeCHHHHHHHHhhc
Q 003887 297 EGPIGVICAPTRELAHQIYLETKKFAKS----HGIRVSAVYGGMSK--LDQFKELKAG-CE---IVIATPGRLIDMLKMK 366 (789)
Q Consensus 297 ~gp~vLIl~PTreLa~Qi~~~~~k~~~~----~~i~v~~~~gg~~~--~~~~~~l~~~-~d---IiV~Tp~~L~~~l~~~ 366 (789)
.+.++||.|+++.-|..+++.+.+.... ..-.+..++|.... ...+..+..+ .+ |+||| +++ ..
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt-----~~l-~~ 511 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTS-----QLL-TT 511 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEES-----STT-TT
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEEC-----Chh-hc
Confidence 3578999999999999999999876432 12235566666543 2223344442 23 77776 222 23
Q ss_pred cccccceeEEEEcccc
Q 003887 367 ALTMSRVTYLVLDEAD 382 (789)
Q Consensus 367 ~~~l~~i~~lVlDEah 382 (789)
.+++..+.+||++..-
T Consensus 512 GiDip~v~~Vi~~~~~ 527 (590)
T 3h1t_A 512 GVDAPTCKNVVLARVV 527 (590)
T ss_dssp TCCCTTEEEEEEESCC
T ss_pred CccchheeEEEEEecC
Confidence 5678889999986654
No 379
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=33.00 E-value=24 Score=33.25 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=15.9
Q ss_pred HcCCCEEEEccCCChhhHH
Q 003887 260 LSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 260 l~grdvl~~a~TGsGKTla 278 (789)
..+.-+++++++|||||++
T Consensus 7 ~~~~~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQ 25 (196)
T ss_dssp TTSCEEEEEECTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3556788999999999986
No 380
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=32.99 E-value=29 Score=36.75 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=18.4
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003887 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ai~~il~grdv--l~~a~TGsGKTla 278 (789)
.+..++.|.++ +..++||||||..
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyT 100 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYT 100 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEe
Confidence 45667788874 4568999999976
No 381
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=32.97 E-value=69 Score=26.93 Aligned_cols=56 Identities=18% Similarity=0.182 Sum_probs=37.3
Q ss_pred CCCcEEEEec------ccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEE
Q 003887 469 DDGDVLVFAS------KKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVL 524 (789)
Q Consensus 469 ~~~kvLVF~~------s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VL 524 (789)
...+++||.. .--.|..+...|.+.++.+..+.=+.....+......+....+..|
T Consensus 15 ~~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v 76 (105)
T 2yan_A 15 NKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQL 76 (105)
T ss_dssp TSSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEE
T ss_pred ccCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeE
Confidence 3457999984 5567999999999998887777655555555555544433334443
No 382
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=32.91 E-value=29 Score=36.86 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=18.4
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003887 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ai~~il~grdv--l~~a~TGsGKTla 278 (789)
.+..++.|.++ +..++||||||..
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyT 94 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYT 94 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeE
Confidence 45667788774 4568999999976
No 383
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=32.87 E-value=29 Score=37.21 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=18.3
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003887 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ai~~il~grdv--l~~a~TGsGKTla 278 (789)
.+..++.|.++ +..++||||||..
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEe
Confidence 45667788774 4568999999976
No 384
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=32.57 E-value=25 Score=37.76 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=18.1
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003887 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ai~~il~grdv--l~~a~TGsGKTla 278 (789)
.+..++.|.++ +..++||||||..
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCccee
Confidence 45567788774 4568999999965
No 385
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=32.42 E-value=35 Score=35.40 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=18.6
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhc
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMD 289 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~~ 289 (789)
+.-+.+++++|+|||+. +.+|..++.
T Consensus 102 g~vi~lvG~nGsGKTTl--l~~Lagll~ 127 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTT--IAKLGRYYQ 127 (304)
T ss_dssp SSEEEEECSTTSSHHHH--HHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHH--HHHHHHHHH
Confidence 45677899999999974 445555543
No 386
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=32.40 E-value=30 Score=36.86 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=18.7
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003887 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ai~~il~grdv--l~~a~TGsGKTla 278 (789)
.+..++.|.++ +..++||||||..
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyT 109 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYT 109 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceE
Confidence 46667888875 4568999999976
No 387
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=32.28 E-value=24 Score=33.98 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=19.8
Q ss_pred HHHcCCCEEEEccCCChhhHHHHHHHHHHHh
Q 003887 258 IILSGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (789)
Q Consensus 258 ~il~grdvl~~a~TGsGKTla~llp~l~~l~ 288 (789)
.+..|+-+.+++|+|+|||.. +-+|.-++
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL--l~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV--VRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH--HHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHH--HHHHHhhC
Confidence 466788888999999999974 44454443
No 388
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=32.28 E-value=26 Score=32.67 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=16.8
Q ss_pred CEEEEccCCChhhHHHHHHHHHHHh
Q 003887 264 DIIGIAKTGSGKTAAFVLPMIVHIM 288 (789)
Q Consensus 264 dvl~~a~TGsGKTla~llp~l~~l~ 288 (789)
-.++++++|+|||.. +-+|..++
T Consensus 28 ~~~i~G~NGsGKStl--l~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNI--GDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHH--HHHHHHHT
T ss_pred cEEEECCCCCCHHHH--HHHHHHHH
Confidence 457899999999975 44555554
No 389
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=32.21 E-value=18 Score=22.26 Aligned_cols=12 Identities=58% Similarity=1.212 Sum_probs=8.1
Q ss_pred CccccCCCCCCC
Q 003887 777 RPRERRRPSGWD 788 (789)
Q Consensus 777 ~~~~~~~~~~~~ 788 (789)
|.|.|+||--||
T Consensus 4 rrrprkrplewd 15 (28)
T 3ukw_C 4 RRRPRKRPLEWD 15 (28)
T ss_dssp ---CCCCCCCCC
T ss_pred ccccccCCcccc
Confidence 567789999998
No 390
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=32.11 E-value=16 Score=34.08 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=14.6
Q ss_pred cCCCEEEEccCCChhhHH
Q 003887 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla 278 (789)
.|.-+.+++++|||||+.
T Consensus 8 ~gei~~l~G~nGsGKSTl 25 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTF 25 (171)
T ss_dssp SSEEEEEECCTTSCHHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 345578899999999975
No 391
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=32.11 E-value=26 Score=33.91 Aligned_cols=40 Identities=10% Similarity=0.198 Sum_probs=22.1
Q ss_pred eeEEEEcccchhccCC---Ch-HHHHHHHhhc-CCCceEEEEecc
Q 003887 373 VTYLVLDEADRMFDLG---FE-PQIRSIVGQI-RPDRQTLLFSAT 412 (789)
Q Consensus 373 i~~lVlDEah~m~~~~---f~-~~i~~il~~~-~~~~q~ll~SAT 412 (789)
-.+|||||||.++... .+ ..+...+... ....++|+++-.
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
Confidence 5689999999985321 11 1122222222 234577777776
No 392
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=32.10 E-value=44 Score=32.15 Aligned_cols=18 Identities=28% Similarity=0.182 Sum_probs=14.8
Q ss_pred cCCCEEEEccCCChhhHH
Q 003887 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla 278 (789)
.|.-+.+++++|+|||+.
T Consensus 24 ~G~~~~l~G~nGsGKSTl 41 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQL 41 (231)
T ss_dssp SSEEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 345688999999999975
No 393
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=31.94 E-value=23 Score=37.57 Aligned_cols=16 Identities=38% Similarity=0.316 Sum_probs=13.5
Q ss_pred CEEEEccCCChhhHHH
Q 003887 264 DIIGIAKTGSGKTAAF 279 (789)
Q Consensus 264 dvl~~a~TGsGKTla~ 279 (789)
-++|+++||||||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 4778999999999753
No 394
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=31.85 E-value=19 Score=33.85 Aligned_cols=16 Identities=31% Similarity=0.302 Sum_probs=13.8
Q ss_pred CCEEEEccCCChhhHH
Q 003887 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvl~~a~TGsGKTla 278 (789)
.-+++++++|||||++
T Consensus 6 ~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTL 21 (193)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4578999999999986
No 395
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=31.84 E-value=74 Score=38.65 Aligned_cols=77 Identities=12% Similarity=0.151 Sum_probs=55.4
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHH---HHHHhcC---CcEEEeCHHHHHHHHhhccccc
Q 003887 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ---FKELKAG---CEIVIATPGRLIDMLKMKALTM 370 (789)
Q Consensus 297 ~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~---~~~l~~~---~dIiV~Tp~~L~~~l~~~~~~l 370 (789)
.+.++||.|+++..+..+...+... .++++..++|+.+..+. +..+..+ ++|+|||. .+ ...+++
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~---~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~-----v~-~~GlDl 572 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLRER---EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE-----IG-SEGRNF 572 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTT---TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC-----CT-TCSSCC
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecc-----hh-hcCCCc
Confidence 3567899999999988877766642 37899999999775433 3444444 89999992 22 345678
Q ss_pred cceeEEEEcccc
Q 003887 371 SRVTYLVLDEAD 382 (789)
Q Consensus 371 ~~i~~lVlDEah 382 (789)
..+++||+-+..
T Consensus 573 ~~~~~VI~~d~p 584 (968)
T 3dmq_A 573 QFASHMVMFDLP 584 (968)
T ss_dssp TTCCEEECSSCC
T ss_pred ccCcEEEEecCC
Confidence 889999876665
No 396
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=31.69 E-value=29 Score=36.98 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=18.0
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003887 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ai~~il~grdv--l~~a~TGsGKTla 278 (789)
.+..++.|.++ +..++||||||..
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyT 97 (355)
T 1goj_A 72 TVDDILNGYNGTVFAYGQTGAGKSYT 97 (355)
T ss_dssp HHHHHTTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCCcceEEEECCCCCCcceE
Confidence 35566788774 5568999999965
No 397
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=31.55 E-value=29 Score=31.70 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=16.2
Q ss_pred EEEEccCCChhhHHHHHHHHHHHh
Q 003887 265 IIGIAKTGSGKTAAFVLPMIVHIM 288 (789)
Q Consensus 265 vl~~a~TGsGKTla~llp~l~~l~ 288 (789)
.++++++|+|||.. +-++..++
T Consensus 26 ~~I~G~NGsGKSti--l~Ai~~~l 47 (149)
T 1f2t_A 26 NLIIGQNGSGKSSL--LDAILVGL 47 (149)
T ss_dssp EEEECCTTSSHHHH--HHHHHHHH
T ss_pred EEEECCCCCCHHHH--HHHHHHHH
Confidence 67899999999975 44455444
No 398
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=31.51 E-value=28 Score=37.13 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=18.3
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003887 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ai~~il~grdv--l~~a~TGsGKTla 278 (789)
.+..++.|.++ +..++||||||..
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyT 105 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFT 105 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceE
Confidence 45667788774 4568999999965
No 399
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=31.34 E-value=29 Score=28.07 Aligned_cols=36 Identities=14% Similarity=0.304 Sum_probs=28.8
Q ss_pred CCCcEEEEecccccHHHHHHHHHHcCCc-eeeccCCCC
Q 003887 469 DDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKD 505 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~-v~~lhg~~~ 505 (789)
...+++|||.+-..+...+..|...|+. +..+ |++.
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 4568999999988889999999999985 5555 6653
No 400
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=31.28 E-value=29 Score=36.91 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=18.3
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003887 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ai~~il~grdv--l~~a~TGsGKTla 278 (789)
.+..++.|.++ +..++||||||..
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyT 122 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHT 122 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceee
Confidence 45667788774 5568999999976
No 401
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=31.18 E-value=1.7e+02 Score=31.66 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=23.0
Q ss_pred CcHHHHHHHHHHH---cCCCEEEEccCCChhhHH
Q 003887 248 PTSIQCQALPIIL---SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 248 ptpiQ~~ai~~il---~grdvl~~a~TGsGKTla 278 (789)
|...=..+|..++ .|+.+++.+++|+|||..
T Consensus 157 ~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtL 190 (422)
T 3ice_A 157 TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTML 190 (422)
T ss_dssp TTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHH
T ss_pred cccccceeeeeeeeecCCcEEEEecCCCCChhHH
Confidence 3344445566554 678999999999999975
No 402
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=31.17 E-value=26 Score=37.21 Aligned_cols=17 Identities=47% Similarity=0.567 Sum_probs=15.1
Q ss_pred CCCEEEEccCCChhhHH
Q 003887 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvl~~a~TGsGKTla 278 (789)
...+++.+++|+|||..
T Consensus 72 ~~~ill~Gp~GtGKT~l 88 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLM 88 (376)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CCCEEEECCCCCCHHHH
Confidence 46899999999999975
No 403
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=31.16 E-value=22 Score=32.99 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=14.4
Q ss_pred CCCEEEEccCCChhhHH
Q 003887 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvl~~a~TGsGKTla 278 (789)
+.-++++++.|||||..
T Consensus 8 g~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAV 24 (175)
T ss_dssp SEEEEEECSTTSCHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 45688999999999975
No 404
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=31.10 E-value=22 Score=33.38 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=14.6
Q ss_pred CCCEEEEccCCChhhHHH
Q 003887 262 GRDIIGIAKTGSGKTAAF 279 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~ 279 (789)
..-+++++++|||||++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345789999999999863
No 405
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=31.04 E-value=19 Score=34.22 Aligned_cols=18 Identities=33% Similarity=0.246 Sum_probs=15.3
Q ss_pred cCCCEEEEccCCChhhHH
Q 003887 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla 278 (789)
.+.-++++++.|||||++
T Consensus 3 ~~~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 356688999999999986
No 406
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=30.89 E-value=23 Score=34.85 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCChhhHHH
Q 003887 261 SGRDIIGIAKTGSGKTAAF 279 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla~ 279 (789)
....+++.+++|||||.+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3457899999999999863
No 407
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=30.71 E-value=27 Score=32.94 Aligned_cols=18 Identities=33% Similarity=0.351 Sum_probs=15.3
Q ss_pred cCCCEEEEccCCChhhHH
Q 003887 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla 278 (789)
.+.-+++++++|||||.+
T Consensus 11 ~~~~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQ 28 (199)
T ss_dssp HSCEEEEEECTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456788999999999976
No 408
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=30.56 E-value=1.2e+02 Score=33.11 Aligned_cols=67 Identities=16% Similarity=0.066 Sum_probs=44.3
Q ss_pred CcEEEEecccccHHHHHHHHHHc-----CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeehh-hh------ccCCCCC
Q 003887 471 GDVLVFASKKTTVDEIESQLAQK-----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDV-AA------RGLDIKS 538 (789)
Q Consensus 471 ~kvLVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v-~~------~GlDI~~ 538 (789)
.++||.++++.-+..+++.+... ++.+..+.++.... .......+|+|+|.- +. ..+++..
T Consensus 163 ~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 235 (479)
T 3fmp_B 163 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE-------RGQKISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (479)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCC-------TTCCCCCSEEEECHHHHHHHHTTSCCCCGGG
T ss_pred CcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccc-------ccccCCCCEEEECchHHHHHHHhcCCcCccc
Confidence 38999999999999887777653 45555555544321 111334689999942 21 3577788
Q ss_pred ccEEEE
Q 003887 539 IKSVVN 544 (789)
Q Consensus 539 v~~VI~ 544 (789)
+.+||.
T Consensus 236 ~~~iVi 241 (479)
T 3fmp_B 236 IKVFVL 241 (479)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888875
No 409
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=30.51 E-value=26 Score=33.46 Aligned_cols=16 Identities=31% Similarity=0.572 Sum_probs=14.1
Q ss_pred CCEEEEccCCChhhHH
Q 003887 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvl~~a~TGsGKTla 278 (789)
+-++++|++|||||++
T Consensus 19 ~~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSV 34 (202)
T ss_dssp SCEEEECSTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4689999999999975
No 410
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=30.47 E-value=26 Score=32.27 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=14.7
Q ss_pred CCEEEEccCCChhhHHH
Q 003887 263 RDIIGIAKTGSGKTAAF 279 (789)
Q Consensus 263 rdvl~~a~TGsGKTla~ 279 (789)
+++++.+..|||||.+.
T Consensus 8 ~~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLA 24 (168)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57899999999999863
No 411
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=30.38 E-value=38 Score=36.18 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=24.1
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcC
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP 306 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~P 306 (789)
|+-+++.+++|+|||.. ++.++..+... +..++++..
T Consensus 74 G~li~I~G~pGsGKTtl-al~la~~~~~~-------g~~vlyi~~ 110 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTL-ALAIVAQAQKA-------GGTCAFIDA 110 (366)
T ss_dssp TSEEEEEESTTSSHHHH-HHHHHHHHHHT-------TCCEEEEES
T ss_pred CcEEEEEcCCCCChHHH-HHHHHHHHHHC-------CCeEEEEEC
Confidence 45688899999999975 45555554332 334666654
No 412
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=30.35 E-value=31 Score=37.58 Aligned_cols=25 Identities=36% Similarity=0.519 Sum_probs=19.7
Q ss_pred HHHHHHHcCCCE--EEEccCCChhhHH
Q 003887 254 QALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 254 ~ai~~il~grdv--l~~a~TGsGKTla 278 (789)
..+..++.|.++ +..++||||||..
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyT 155 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYT 155 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeE
Confidence 357778899875 4568999999976
No 413
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=30.31 E-value=3.3e+02 Score=31.95 Aligned_cols=77 Identities=9% Similarity=0.091 Sum_probs=48.9
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHh---c-CCc--EEEeCHHHHHHHHhhccccc
Q 003887 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK---A-GCE--IVIATPGRLIDMLKMKALTM 370 (789)
Q Consensus 297 ~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~---~-~~d--IiV~Tp~~L~~~l~~~~~~l 370 (789)
.+.++||.+..+..+.-+...+... ++.+..+.|+.+..+....+. . ... |++.|...+ ...++|
T Consensus 571 ~g~kvLIFsq~~~~ld~L~~~L~~~----g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~ag-----g~GlNL 641 (800)
T 3mwy_W 571 DGHRVLIFSQMVRMLDILGDYLSIK----GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAG-----GLGINL 641 (800)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHH----TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHH-----TTTCCC
T ss_pred CCCeEEEEechHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccc-----cCCCCc
Confidence 3668999999988877666555543 788899999887765544432 2 122 344443222 345678
Q ss_pred cceeEEEEcccc
Q 003887 371 SRVTYLVLDEAD 382 (789)
Q Consensus 371 ~~i~~lVlDEah 382 (789)
..++.||+=+.+
T Consensus 642 ~~a~~VI~~D~~ 653 (800)
T 3mwy_W 642 MTADTVVIFDSD 653 (800)
T ss_dssp TTCCEEEESSCC
T ss_pred cccceEEEecCC
Confidence 888887774444
No 414
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=30.17 E-value=31 Score=37.18 Aligned_cols=24 Identities=33% Similarity=0.518 Sum_probs=18.4
Q ss_pred HHHHHHcCCC--EEEEccCCChhhHH
Q 003887 255 ALPIILSGRD--IIGIAKTGSGKTAA 278 (789)
Q Consensus 255 ai~~il~grd--vl~~a~TGsGKTla 278 (789)
.+..++.|.+ ++..++||||||..
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyT 151 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHT 151 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeE
Confidence 4666778876 45568999999976
No 415
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=30.12 E-value=25 Score=37.41 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=18.8
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003887 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ai~~il~grdv--l~~a~TGsGKTla 278 (789)
.+..++.|.++ +..++||||||..
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyT 102 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYT 102 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceE
Confidence 56677888774 4568999999976
No 416
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=30.10 E-value=27 Score=34.31 Aligned_cols=27 Identities=22% Similarity=0.381 Sum_probs=18.6
Q ss_pred HHcCCCEEEEccCCChhhHHHHHHHHHHH
Q 003887 259 ILSGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 259 il~grdvl~~a~TGsGKTla~llp~l~~l 287 (789)
+..|+-+++++|.|+|||.. +-+|..+
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL--lk~L~g~ 39 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL--IQALLKT 39 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH--HHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH--HHHHhcc
Confidence 45677788999999999974 3344443
No 417
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=30.04 E-value=27 Score=32.85 Aligned_cols=15 Identities=27% Similarity=0.286 Sum_probs=12.9
Q ss_pred CEEEEccCCChhhHH
Q 003887 264 DIIGIAKTGSGKTAA 278 (789)
Q Consensus 264 dvl~~a~TGsGKTla 278 (789)
-+++++++|+|||+.
T Consensus 4 ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 4 LYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCcHHHH
Confidence 467899999999975
No 418
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=29.88 E-value=36 Score=43.01 Aligned_cols=43 Identities=21% Similarity=0.314 Sum_probs=32.3
Q ss_pred ccceeEEEEcccchhccCCChHHHHHHHhhcCCCceEEEEecc
Q 003887 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT 412 (789)
Q Consensus 370 l~~i~~lVlDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT 412 (789)
+++-.++||||+-.-+|..-+..+...+..+..++-+|+.+.-
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHr 612 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHR 612 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSC
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEccc
Confidence 5567889999999888887788888877776666655555543
No 419
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=29.86 E-value=25 Score=37.37 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=18.3
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003887 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ai~~il~grdv--l~~a~TGsGKTla 278 (789)
.+..++.|.++ +..++||||||..
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyT 101 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFT 101 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEe
Confidence 45666788774 4568999999976
No 420
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=29.83 E-value=31 Score=37.89 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=18.3
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003887 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ai~~il~grdv--l~~a~TGsGKTla 278 (789)
.+..++.|.++ +..+.||||||..
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyT 153 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYT 153 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEE
Confidence 45667788774 4568999999976
No 421
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=29.77 E-value=30 Score=32.10 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=14.0
Q ss_pred CCEEEEccCCChhhHH
Q 003887 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvl~~a~TGsGKTla 278 (789)
+.+++++++|||||..
T Consensus 5 ~~i~i~G~~GsGKsTl 20 (175)
T 1via_A 5 KNIVFIGFMGSGKSTL 20 (175)
T ss_dssp CCEEEECCTTSCHHHH
T ss_pred CEEEEEcCCCCCHHHH
Confidence 3689999999999975
No 422
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=29.76 E-value=28 Score=37.24 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=18.8
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003887 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ai~~il~grdv--l~~a~TGsGKTla 278 (789)
.+..++.|.++ +..++||||||..
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyT 96 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFT 96 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEe
Confidence 56777888874 4568999999976
No 423
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=29.56 E-value=29 Score=36.11 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=15.3
Q ss_pred cCCCEEEEccCCChhhHH
Q 003887 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla 278 (789)
...++++.|++|+|||..
T Consensus 44 ~~~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTA 61 (350)
T ss_dssp GGCCEEEECCGGGCTTHH
T ss_pred CCceEEEECCCCccHHHH
Confidence 345799999999999975
No 424
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=29.54 E-value=49 Score=31.15 Aligned_cols=23 Identities=17% Similarity=0.046 Sum_probs=15.6
Q ss_pred CEEEEccCCChhhHHHHHHHHHHH
Q 003887 264 DIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 264 dvl~~a~TGsGKTla~llp~l~~l 287 (789)
-+.++++.|||||.. +..++..+
T Consensus 6 ~i~i~G~sGsGKTTl-~~~L~~~l 28 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL-MEKWVAAA 28 (169)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHHHhh
Confidence 367889999999974 33344443
No 425
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=29.54 E-value=22 Score=33.97 Aligned_cols=18 Identities=33% Similarity=0.287 Sum_probs=15.0
Q ss_pred cCCCEEEEccCCChhhHH
Q 003887 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla 278 (789)
.+.-++++++.|||||++
T Consensus 3 ~~~~I~i~G~~GsGKsT~ 20 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQ 20 (213)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCeEEEEEcCCCCCHHHH
Confidence 345688999999999986
No 426
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=29.40 E-value=31 Score=35.19 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=14.0
Q ss_pred CCEEEEccCCChhhHH
Q 003887 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvl~~a~TGsGKTla 278 (789)
..+++.+|+|+|||..
T Consensus 48 ~~~ll~G~~GtGKt~l 63 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTEL 63 (311)
T ss_dssp EEEEEESCSSSSHHHH
T ss_pred eEEEEECCCCcCHHHH
Confidence 3689999999999975
No 427
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=29.21 E-value=25 Score=37.27 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=15.0
Q ss_pred CCCEEEEccCCChhhHH
Q 003887 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvl~~a~TGsGKTla 278 (789)
.+.+|+.+++|+|||+.
T Consensus 117 ~~~vLl~GppGtGKT~l 133 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLI 133 (357)
T ss_dssp CSEEEEESSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46799999999999975
No 428
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=29.13 E-value=34 Score=35.46 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=18.5
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHh
Q 003887 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla~llp~l~~l~ 288 (789)
.+.-+.+++++|+|||+. +..|..++
T Consensus 99 ~g~vi~lvG~nGsGKTTl--l~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTS--LGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHH--HHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHH--HHHHHHHH
Confidence 345678899999999975 44455544
No 429
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=29.05 E-value=26 Score=38.05 Aligned_cols=14 Identities=36% Similarity=0.487 Sum_probs=12.4
Q ss_pred EEEEccCCChhhHH
Q 003887 265 IIGIAKTGSGKTAA 278 (789)
Q Consensus 265 vl~~a~TGsGKTla 278 (789)
++|++|||+|||..
T Consensus 5 i~i~GptgsGKttl 18 (409)
T 3eph_A 5 IVIAGTTGVGKSQL 18 (409)
T ss_dssp EEEEECSSSSHHHH
T ss_pred EEEECcchhhHHHH
Confidence 67899999999975
No 430
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=28.99 E-value=1e+02 Score=35.79 Aligned_cols=77 Identities=19% Similarity=0.205 Sum_probs=50.6
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhh-----------------------------cCcEEEEEEcCCChHHHHHH---H
Q 003887 298 GPIGVICAPTRELAHQIYLETKKFAKS-----------------------------HGIRVSAVYGGMSKLDQFKE---L 345 (789)
Q Consensus 298 gp~vLIl~PTreLa~Qi~~~~~k~~~~-----------------------------~~i~v~~~~gg~~~~~~~~~---l 345 (789)
+..+||.||++.-+..++..+.+.... ....+..++++.+..++... +
T Consensus 237 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 316 (720)
T 2zj8_A 237 KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENF 316 (720)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 456899999999999998888765321 11247888998887655332 2
Q ss_pred hc-CCcEEEeCHHHHHHHHhhccccccceeEEEEccc
Q 003887 346 KA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEA 381 (789)
Q Consensus 346 ~~-~~dIiV~Tp~~L~~~l~~~~~~l~~i~~lVlDEa 381 (789)
.. ...|||||. .+. ..+++..+.+ ||+..
T Consensus 317 ~~g~~~vlvaT~-----~l~-~Gvdip~~~~-VI~~~ 346 (720)
T 2zj8_A 317 RKGIIKAVVATP-----TLS-AGINTPAFRV-IIRDI 346 (720)
T ss_dssp HTTSSCEEEECS-----TTG-GGCCCCBSEE-EECCS
T ss_pred HCCCCeEEEECc-----Hhh-ccCCCCceEE-EEcCC
Confidence 22 478999993 222 3446667776 45533
No 431
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=28.95 E-value=44 Score=29.74 Aligned_cols=37 Identities=16% Similarity=0.329 Sum_probs=32.1
Q ss_pred CCCcEEEEecccccHHHHHHHHHHcCCc-eeeccCCCC
Q 003887 469 DDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKD 505 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~-v~~lhg~~~ 505 (789)
...+++|||.+=......+..|...|+. +..|.|++.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 3568999999988899999999999995 888999884
No 432
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=28.86 E-value=29 Score=33.79 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=14.0
Q ss_pred CEEEEccCCChhhHHHH
Q 003887 264 DIIGIAKTGSGKTAAFV 280 (789)
Q Consensus 264 dvl~~a~TGsGKTla~l 280 (789)
.+++.+|+||||++++-
T Consensus 2 ~Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999998744
No 433
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=28.73 E-value=35 Score=32.80 Aligned_cols=29 Identities=21% Similarity=0.067 Sum_probs=20.5
Q ss_pred cHHHHHHHHHHHcCCCEEEEccCCChhhHH
Q 003887 249 TSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 249 tpiQ~~ai~~il~grdvl~~a~TGsGKTla 278 (789)
++.++.. ..+..+.-+++++++|+|||.+
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~ 41 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTL 41 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHH
Confidence 4455544 2344566788999999999975
No 434
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=28.69 E-value=26 Score=33.51 Aligned_cols=18 Identities=33% Similarity=0.359 Sum_probs=14.9
Q ss_pred cCCCEEEEccCCChhhHH
Q 003887 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla 278 (789)
.+.-+++.+++|||||..
T Consensus 24 ~g~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTL 41 (200)
T ss_dssp CCEEEEEECSTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456678899999999975
No 435
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=28.67 E-value=27 Score=31.18 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=31.9
Q ss_pred CCCcEEEEecccccHHHHHHHHHHcCCc-eeeccCCCC
Q 003887 469 DDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKD 505 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~-v~~lhg~~~ 505 (789)
...+++|||.+-..+..++..|...|+. +..|.|++.
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 3568999999988888999999999995 889999864
No 436
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=28.59 E-value=29 Score=32.43 Aligned_cols=15 Identities=27% Similarity=0.178 Sum_probs=13.1
Q ss_pred CEEEEccCCChhhHH
Q 003887 264 DIIGIAKTGSGKTAA 278 (789)
Q Consensus 264 dvl~~a~TGsGKTla 278 (789)
-+++++++|||||++
T Consensus 3 ~I~i~G~~GsGKsT~ 17 (194)
T 1nks_A 3 IGIVTGIPGVGKSTV 17 (194)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999976
No 437
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=28.45 E-value=33 Score=33.28 Aligned_cols=17 Identities=18% Similarity=0.175 Sum_probs=14.7
Q ss_pred CCEEEEccCCChhhHHH
Q 003887 263 RDIIGIAKTGSGKTAAF 279 (789)
Q Consensus 263 rdvl~~a~TGsGKTla~ 279 (789)
..+++++++|||||.+.
T Consensus 6 ~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 6 LKVMISGAPASGKGTQC 22 (222)
T ss_dssp CCEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 56899999999999863
No 438
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=28.36 E-value=31 Score=40.18 Aligned_cols=90 Identities=17% Similarity=0.271 Sum_probs=57.4
Q ss_pred EecCCCcchHHHH-HHhcCCCCCCCcEEEEecccccHHHHHHHHHH---cCCceeeccCCCCHHHHHHHHHHhhcCCccE
Q 003887 448 HVIPSDAEKLPWL-LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQ---KGFKAAALHGDKDQASRMEILQKFKSGVYHV 523 (789)
Q Consensus 448 ~~~~~~~~k~~~L-~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~---~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~V 523 (789)
...+....|-... +..+......+++||.+|++.-+..+++.++. .++.+..++|+....++ ..+..+|
T Consensus 45 v~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~~~I 117 (702)
T 2p6r_A 45 LAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-------HLGDCDI 117 (702)
T ss_dssp EECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CSTTCSE
T ss_pred EEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hccCCCE
Confidence 3444455554332 22222222367999999999999999888843 37889999998775432 1247889
Q ss_pred EEeeh-----hhhccCC-CCCccEEEE
Q 003887 524 LIATD-----VAARGLD-IKSIKSVVN 544 (789)
Q Consensus 524 LVaT~-----v~~~GlD-I~~v~~VI~ 544 (789)
+|+|. .+..+.. +..+.+||.
T Consensus 118 iv~Tpe~l~~~l~~~~~~l~~~~~vIi 144 (702)
T 2p6r_A 118 IVTTSEKADSLIRNRASWIKAVSCLVV 144 (702)
T ss_dssp EEEEHHHHHHHHHTTCSGGGGCCEEEE
T ss_pred EEECHHHHHHHHHcChhHHhhcCEEEE
Confidence 99994 2223333 566777774
No 439
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=28.35 E-value=4.5e+02 Score=26.80 Aligned_cols=55 Identities=11% Similarity=0.175 Sum_probs=32.2
Q ss_pred HHHHHHHhhccccccceeEEEEcccch-hccCCChHHHHHHHhhcCCCceEEEEeccC
Q 003887 357 GRLIDMLKMKALTMSRVTYLVLDEADR-MFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (789)
Q Consensus 357 ~~L~~~l~~~~~~l~~i~~lVlDEah~-m~~~~f~~~i~~il~~~~~~~q~ll~SATl 413 (789)
..+.+.+....+ +....+|||||+|. |... ....+...+...+++..+|+.+.++
T Consensus 62 ~~l~~~~~~~pl-f~~~kvvii~~~~~kl~~~-~~~aLl~~le~p~~~~~~il~~~~~ 117 (343)
T 1jr3_D 62 NAIFSLCQAMSL-FASRQTLLLLLPENGPNAA-INEQLLTLTGLLHDDLLLIVRGNKL 117 (343)
T ss_dssp HHHHHHHHHHHH-CCSCEEEEEECCSSCCCTT-HHHHHHHHHTTCBTTEEEEEEESCC
T ss_pred HHHHHHhcCcCC-ccCCeEEEEECCCCCCChH-HHHHHHHHHhcCCCCeEEEEEcCCC
Confidence 334444433222 45678999999998 6432 3345666666655565555555444
No 440
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=28.09 E-value=26 Score=37.79 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=17.6
Q ss_pred HHHHHcCCCE--EEEccCCChhhHH
Q 003887 256 LPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 256 i~~il~grdv--l~~a~TGsGKTla 278 (789)
+..++.|.++ +..++||||||..
T Consensus 91 v~~~l~G~N~tifAYGqTGSGKTyT 115 (388)
T 3bfn_A 91 LRHLLEGQNASVLAYGPTGAGKTHT 115 (388)
T ss_dssp HHHHTTTCCEEEEEESCTTSSHHHH
T ss_pred HHHhhcCceeeEeeecCCCCCCCeE
Confidence 4567788774 4568999999965
No 441
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=28.00 E-value=31 Score=36.14 Aligned_cols=16 Identities=25% Similarity=0.355 Sum_probs=14.4
Q ss_pred CCEEEEccCCChhhHH
Q 003887 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvl~~a~TGsGKTla 278 (789)
..+++.+|+|+|||..
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 6799999999999975
No 442
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=27.95 E-value=31 Score=33.39 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=14.9
Q ss_pred CCCEEEEccCCChhhHHH
Q 003887 262 GRDIIGIAKTGSGKTAAF 279 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~ 279 (789)
+..+++.+++|||||++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 356889999999999863
No 443
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=27.94 E-value=30 Score=33.76 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=14.6
Q ss_pred CCCEEEEccCCChhhHH
Q 003887 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvl~~a~TGsGKTla 278 (789)
...+++++++|||||.+
T Consensus 7 ~~~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTV 23 (227)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 35689999999999986
No 444
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=27.90 E-value=33 Score=34.65 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=16.8
Q ss_pred CCEEEEccCCChhhHHHHHHHHHHH
Q 003887 263 RDIIGIAKTGSGKTAAFVLPMIVHI 287 (789)
Q Consensus 263 rdvl~~a~TGsGKTla~llp~l~~l 287 (789)
+.+++.+|+|+|||.. +-++...
T Consensus 74 ~gvll~Gp~GtGKTtl--~~~i~~~ 96 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHL--ARAVAGE 96 (278)
T ss_dssp CEEEEECCTTSSHHHH--HHHHHHH
T ss_pred CeEEEECCCcChHHHH--HHHHHHH
Confidence 4589999999999964 3444443
No 445
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=27.84 E-value=31 Score=38.00 Aligned_cols=53 Identities=15% Similarity=0.175 Sum_probs=37.8
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCChHHHHHHHhc-CCcEEEeC
Q 003887 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKA-GCEIVIAT 355 (789)
Q Consensus 298 gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~-~~dIiV~T 355 (789)
+.++||.||++.-|..+++.+++. ++.+..+++.. ....+..+.. ...|||||
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~-R~~~~~~f~~g~~~iLVaT 243 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKS-YDTEYPKCKNGDWDFVITT 243 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTC-CCCCGGGSSSCCCSEEEES
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHH-HHHHHhhccCCCceEEEEC
Confidence 456899999999999888887775 78888888752 2222222332 37899999
No 446
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=27.64 E-value=23 Score=36.36 Aligned_cols=16 Identities=31% Similarity=0.366 Sum_probs=13.7
Q ss_pred CCEEEEccCCChhhHH
Q 003887 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvl~~a~TGsGKTla 278 (789)
.-++++|++|+|||..
T Consensus 34 ~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSL 49 (287)
T ss_dssp EEEEEECCTTSCTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3478899999999975
No 447
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=27.62 E-value=47 Score=28.37 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=31.7
Q ss_pred CCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCC
Q 003887 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKD 505 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~ 505 (789)
...+++|||.+-..+..++..|...|+....|.|++.
T Consensus 55 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 55 KDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 4568999999988899999999999986678888865
No 448
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=27.62 E-value=31 Score=32.19 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=13.2
Q ss_pred CEEEEccCCChhhHH
Q 003887 264 DIIGIAKTGSGKTAA 278 (789)
Q Consensus 264 dvl~~a~TGsGKTla 278 (789)
-+++++++|||||++
T Consensus 8 ~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999986
No 449
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=27.49 E-value=86 Score=26.94 Aligned_cols=57 Identities=11% Similarity=0.105 Sum_probs=33.6
Q ss_pred CCEEEEEcCcHHHHHHHHH-HHHHHhhhcCcE-EEEEEcCCChHHHHHHHhcCCcEEEeCHH
Q 003887 298 GPIGVICAPTRELAHQIYL-ETKKFAKSHGIR-VSAVYGGMSKLDQFKELKAGCEIVIATPG 357 (789)
Q Consensus 298 gp~vLIl~PTreLa~Qi~~-~~~k~~~~~~i~-v~~~~gg~~~~~~~~~l~~~~dIiV~Tp~ 357 (789)
..++|++|++=--..++.. .+++.++..++. +.+..-... .+......+|+||+|+.
T Consensus 18 ~~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i~~~~~~---~~~~~~~~~DlIi~t~~ 76 (110)
T 3czc_A 18 MVKVLTACGNGMGSSMVIKMKVENALRQLGVSDIESASCSVG---EAKGLASNYDIVVASNH 76 (110)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECHH---HHHHHGGGCSEEEEETT
T ss_pred CcEEEEECCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEeeHH---HHhhccCCCcEEEECCc
Confidence 3568999997554444444 677777666665 433332221 22222356999999984
No 450
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=27.47 E-value=60 Score=36.82 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=19.9
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHh
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~ 288 (789)
.-++++.+.||||||.+ +..++..++
T Consensus 214 ~pHlLIaG~TGSGKS~~-L~tlI~sLl 239 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVG-VNAMLLSIL 239 (574)
T ss_dssp SCCEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHH-HHHHHHHHH
Confidence 46899999999999986 555555554
No 451
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=27.24 E-value=87 Score=38.16 Aligned_cols=65 Identities=15% Similarity=0.165 Sum_probs=47.6
Q ss_pred CCCcEEEEecccccHHHHHHHHHHc--CCceeeccCCCCHHHHHHHHHHhhcCCccEEEeeh-hh----hcc-CCCCCcc
Q 003887 469 DDGDVLVFASKKTTVDEIESQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA----ARG-LDIKSIK 540 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~--g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~----~~G-lDI~~v~ 540 (789)
...++||.++++.-+..++..|.+. ++.+..+||+.+ .++..+|||+|. .+ .++ ..+..+.
T Consensus 81 ~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~-----------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~ 149 (997)
T 4a4z_A 81 NMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQ-----------INPDANCLIMTTEILRSMLYRGADLIRDVE 149 (997)
T ss_dssp TTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCE-----------ECTTSSEEEEEHHHHHHHHHHTCSGGGGEE
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCc-----------cCCCCCEEEECHHHHHHHHHhCchhhcCCC
Confidence 3568999999999999999999885 678999999875 245678999984 22 222 3455666
Q ss_pred EEEE
Q 003887 541 SVVN 544 (789)
Q Consensus 541 ~VI~ 544 (789)
+||.
T Consensus 150 lvVi 153 (997)
T 4a4z_A 150 FVIF 153 (997)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6663
No 452
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=27.09 E-value=31 Score=33.21 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=17.1
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHh
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~ 288 (789)
+.-+.+.+++|||||+. +-+|..++
T Consensus 22 g~~v~I~G~sGsGKSTl--~~~l~~~~ 46 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTL--SNPLAAAL 46 (208)
T ss_dssp CEEEEEECCTTSCTHHH--HHHHHHHH
T ss_pred CeEEEEECCCCCCHHHH--HHHHHHHH
Confidence 44567899999999974 44444443
No 453
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=27.07 E-value=17 Score=36.48 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=14.6
Q ss_pred CCCEEEEccCCChhhHH
Q 003887 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvl~~a~TGsGKTla 278 (789)
.+.+++.+|+|+|||..
T Consensus 44 ~~~vll~G~~GtGKT~l 60 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLL 60 (268)
T ss_dssp CSCCCCBCSSCSSHHHH
T ss_pred CceEEEECCCCCcHHHH
Confidence 35689999999999975
No 454
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=26.86 E-value=32 Score=33.03 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=13.6
Q ss_pred CEEEEccCCChhhHHH
Q 003887 264 DIIGIAKTGSGKTAAF 279 (789)
Q Consensus 264 dvl~~a~TGsGKTla~ 279 (789)
.+++.+++|||||++.
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999863
No 455
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=26.77 E-value=32 Score=32.46 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=16.2
Q ss_pred CEEEEccCCChhhHHHHHHHHHHHh
Q 003887 264 DIIGIAKTGSGKTAAFVLPMIVHIM 288 (789)
Q Consensus 264 dvl~~a~TGsGKTla~llp~l~~l~ 288 (789)
.+.+.++.|+|||+. +-++..++
T Consensus 2 ~i~l~G~nGsGKTTL--l~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL--VKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHH
T ss_pred EEEEECCCCCCHHHH--HHHHHHHh
Confidence 467899999999974 44444443
No 456
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=26.75 E-value=37 Score=31.15 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=13.9
Q ss_pred CCEEEEccCCChhhHH
Q 003887 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvl~~a~TGsGKTla 278 (789)
+.+++++++|||||.+
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTV 18 (173)
T ss_dssp CCEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4588999999999976
No 457
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=26.71 E-value=39 Score=31.51 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=14.0
Q ss_pred CCEEEEccCCChhhHH
Q 003887 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvl~~a~TGsGKTla 278 (789)
..+++++++|||||.+
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTI 18 (184)
T ss_dssp CSEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4588999999999976
No 458
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=26.59 E-value=33 Score=33.77 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=14.6
Q ss_pred CCEEEEccCCChhhHHHH
Q 003887 263 RDIIGIAKTGSGKTAAFV 280 (789)
Q Consensus 263 rdvl~~a~TGsGKTla~l 280 (789)
+-+++.+|+||||++++-
T Consensus 30 kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp EEEEEECCTTCCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 457789999999998743
No 459
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=26.52 E-value=38 Score=30.60 Aligned_cols=37 Identities=19% Similarity=0.399 Sum_probs=31.3
Q ss_pred CCCcEEEEecccccHHHHHHHHHHcCCc-eeeccCCCC
Q 003887 469 DDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKD 505 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~-v~~lhg~~~ 505 (789)
...+++|||.+-..+..++..|...|+. +..|.|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 55 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred CCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 4568999999888888999999999995 888888864
No 460
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=26.50 E-value=24 Score=32.80 Aligned_cols=17 Identities=29% Similarity=0.120 Sum_probs=10.6
Q ss_pred CCCEEEEccCCChhhHH
Q 003887 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvl~~a~TGsGKTla 278 (789)
+.-+++++..|||||.+
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHT 21 (183)
T ss_dssp CCEEEEECCC----CHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45688999999999986
No 461
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=26.40 E-value=44 Score=31.93 Aligned_cols=41 Identities=17% Similarity=0.150 Sum_probs=24.7
Q ss_pred ccceeEEEEcccchhc--cCCChHHHHHHHhhcCCCceEEEEeccC
Q 003887 370 MSRVTYLVLDEADRMF--DLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (789)
Q Consensus 370 l~~i~~lVlDEah~m~--~~~f~~~i~~il~~~~~~~q~ll~SATl 413 (789)
+...++|||||+..|- +..|...+..++.. ...+|+-+.|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeec
Confidence 5667899999988773 33355555555543 22244445564
No 462
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=26.34 E-value=49 Score=37.81 Aligned_cols=30 Identities=17% Similarity=0.310 Sum_probs=22.0
Q ss_pred HHHHcCCCEEEEccCCChhhHHHHHHHHHHHh
Q 003887 257 PIILSGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (789)
Q Consensus 257 ~~il~grdvl~~a~TGsGKTla~llp~l~~l~ 288 (789)
..+..++.+++.+|+|+|||.. +-++..++
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtl--ar~ia~~l 84 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSML--GQAMAELL 84 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHH--HHHHHHTS
T ss_pred ccccCCCEEEEEeCCCCCHHHH--HHHHhccC
Confidence 3456788999999999999975 33444443
No 463
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=26.28 E-value=39 Score=36.01 Aligned_cols=18 Identities=39% Similarity=0.484 Sum_probs=14.5
Q ss_pred cCCC--EEEEccCCChhhHH
Q 003887 261 SGRD--IIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grd--vl~~a~TGsGKTla 278 (789)
.|.+ ++..++||||||..
T Consensus 82 ~G~n~tifAYGqTGSGKTyT 101 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYT 101 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHH
T ss_pred CCceeEEEeeCCCCCCCCEE
Confidence 4776 46779999999976
No 464
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=26.19 E-value=34 Score=32.29 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=13.0
Q ss_pred CEEEEccCCChhhHH
Q 003887 264 DIIGIAKTGSGKTAA 278 (789)
Q Consensus 264 dvl~~a~TGsGKTla 278 (789)
.+++.+++|||||++
T Consensus 2 ~I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 368899999999975
No 465
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=26.13 E-value=96 Score=26.24 Aligned_cols=47 Identities=17% Similarity=0.158 Sum_probs=34.8
Q ss_pred CCcEEEEec------ccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHh
Q 003887 470 DGDVLVFAS------KKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKF 516 (789)
Q Consensus 470 ~~kvLVF~~------s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F 516 (789)
..+++||.. .--.|..+...|...++.+..++=+.....+.......
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~ 66 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFS 66 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHH
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHh
Confidence 457899977 45679999999999999888877666665555554443
No 466
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=26.04 E-value=34 Score=32.89 Aligned_cols=15 Identities=20% Similarity=0.479 Sum_probs=13.3
Q ss_pred CEEEEccCCChhhHH
Q 003887 264 DIIGIAKTGSGKTAA 278 (789)
Q Consensus 264 dvl~~a~TGsGKTla 278 (789)
.+++.++.|||||++
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999986
No 467
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=25.96 E-value=77 Score=35.03 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=17.3
Q ss_pred HHcCCCEEEEccCCChhhHH
Q 003887 259 ILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 259 il~grdvl~~a~TGsGKTla 278 (789)
+..|+.+++.++.|+|||..
T Consensus 148 i~kGq~~~i~G~sGvGKTtL 167 (473)
T 1sky_E 148 YIKGGKIGLFGGAGVGKTVL 167 (473)
T ss_dssp EETTCEEEEECCSSSCHHHH
T ss_pred hccCCEEEEECCCCCCccHH
Confidence 34788899999999999975
No 468
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=25.84 E-value=46 Score=35.41 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=18.0
Q ss_pred CCCEEEEccCCChhhHHHHHHHHHHHh
Q 003887 262 GRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (789)
Q Consensus 262 grdvl~~a~TGsGKTla~llp~l~~l~ 288 (789)
+.-+.+++++|+|||+. +..|..++
T Consensus 157 g~vi~lvG~nGsGKTTl--l~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTS--LGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHH--HHHHHHHH
T ss_pred CeEEEEEcCCCChHHHH--HHHHHhhc
Confidence 45578899999999975 44455544
No 469
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=25.76 E-value=35 Score=32.42 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=13.9
Q ss_pred CCEEEEccCCChhhHH
Q 003887 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvl~~a~TGsGKTla 278 (789)
..+++++++|||||.+
T Consensus 21 ~~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQ 36 (201)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4588999999999986
No 470
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=25.68 E-value=1.4e+02 Score=33.02 Aligned_cols=90 Identities=19% Similarity=0.166 Sum_probs=52.0
Q ss_pred EEecCCCcchHHH----HHHhcCCCCCCCcEEEEecccccHHHHHHHHHHcC----CceeeccCCCCHHHHHHHHHHhhc
Q 003887 447 VHVIPSDAEKLPW----LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKG----FKAAALHGDKDQASRMEILQKFKS 518 (789)
Q Consensus 447 ~~~~~~~~~k~~~----L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g----~~v~~lhg~~~~~eR~~~l~~F~~ 518 (789)
+...+....|-.. ++..+.......++||.++++.-+..+.+.+.... +.+....++.... -..
T Consensus 162 ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 233 (508)
T 3fho_A 162 IGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPK--------GAK 233 (508)
T ss_dssp EEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC------------------C
T ss_pred EEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccc--------ccc
Confidence 4445556666543 34444443334589999999999999999888753 2233333322211 112
Q ss_pred CCccEEEeehh-hh-----ccCCCCCccEEEE
Q 003887 519 GVYHVLIATDV-AA-----RGLDIKSIKSVVN 544 (789)
Q Consensus 519 G~~~VLVaT~v-~~-----~GlDI~~v~~VI~ 544 (789)
...+|+|+|.- +. ..+++..+++||.
T Consensus 234 ~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIi 265 (508)
T 3fho_A 234 IDAQIVIGTPGTVMDLMKRRQLDARDIKVFVL 265 (508)
T ss_dssp CCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred CCCCEEEECHHHHHHHHHcCCccccCCCEEEE
Confidence 36789999932 22 3567778888775
No 471
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=25.61 E-value=3.1e+02 Score=26.53 Aligned_cols=81 Identities=17% Similarity=0.157 Sum_probs=49.3
Q ss_pred HcCCCEEEEccCC-ChhhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCcEEEEEEcCCCh
Q 003887 260 LSGRDIIGIAKTG-SGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSK 338 (789)
Q Consensus 260 l~grdvl~~a~TG-sGKTla~llp~l~~l~~~~~~~~~~gp~vLIl~PTreLa~Qi~~~~~k~~~~~~i~v~~~~gg~~~ 338 (789)
+.++.+||.+.+| .|+.++- ++.. .+..++++.-+.+-+.++.+++... +-++..+......
T Consensus 7 ~~~k~vlITGas~giG~~~a~------~l~~-------~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~ 69 (253)
T 3qiv_A 7 FENKVGIVTGSGGGIGQAYAE------ALAR-------EGAAVVVADINAEAAEAVAKQIVAD----GGTAISVAVDVSD 69 (253)
T ss_dssp TTTCEEEEETTTSHHHHHHHH------HHHH-------TTCEEEEEESCHHHHHHHHHHHHHT----TCEEEEEECCTTS
T ss_pred cCCCEEEEECCCChHHHHHHH------HHHH-------CCCEEEEEcCCHHHHHHHHHHHHhc----CCcEEEEEccCCC
Confidence 3567788876654 3776542 2222 2566777777777666666666543 4566667777776
Q ss_pred HHHHHHHhc-------CCcEEEeCHH
Q 003887 339 LDQFKELKA-------GCEIVIATPG 357 (789)
Q Consensus 339 ~~~~~~l~~-------~~dIiV~Tp~ 357 (789)
.+.+..+.. ..|++|...+
T Consensus 70 ~~~~~~~~~~~~~~~g~id~li~~Ag 95 (253)
T 3qiv_A 70 PESAKAMADRTLAEFGGIDYLVNNAA 95 (253)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 665554432 5677776643
No 472
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=25.54 E-value=32 Score=32.26 Aligned_cols=17 Identities=35% Similarity=0.335 Sum_probs=14.4
Q ss_pred CCCEEEEccCCChhhHH
Q 003887 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvl~~a~TGsGKTla 278 (789)
+.-+++++.+|+|||.+
T Consensus 13 ~~~i~l~G~~GsGKsT~ 29 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTI 29 (186)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 45688999999999975
No 473
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=25.44 E-value=27 Score=34.16 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=11.2
Q ss_pred cCCCEEEEccCCChhhHH
Q 003887 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla 278 (789)
.|+-+.+.+|+|+|||..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp CCCEEEEECSCC----CH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456678899999999975
No 474
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=25.24 E-value=37 Score=36.12 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=13.3
Q ss_pred CEEEEccCCChhhHHH
Q 003887 264 DIIGIAKTGSGKTAAF 279 (789)
Q Consensus 264 dvl~~a~TGsGKTla~ 279 (789)
-.++++++|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999763
No 475
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=25.08 E-value=55 Score=34.15 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=13.8
Q ss_pred CCCEEEEccCCChhhHH
Q 003887 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvl~~a~TGsGKTla 278 (789)
++-+++++++|+|||..
T Consensus 105 ~~vI~ivG~~G~GKTT~ 121 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTS 121 (320)
T ss_dssp CEEEEEESSTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34577889999999975
No 476
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=25.06 E-value=33 Score=31.90 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=14.8
Q ss_pred cCCCEEEEccCCChhhHH
Q 003887 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla 278 (789)
.|.-+++++.+|||||++
T Consensus 4 ~g~~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTV 21 (179)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 345678999999999975
No 477
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=24.91 E-value=37 Score=36.45 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=18.3
Q ss_pred HHHHHHcCCCE--EEEccCCChhhHH
Q 003887 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (789)
Q Consensus 255 ai~~il~grdv--l~~a~TGsGKTla 278 (789)
.+..++.|.++ +..++||||||..
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyT 132 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFT 132 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceE
Confidence 46667788774 4568999999965
No 478
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=24.83 E-value=1.1e+02 Score=33.46 Aligned_cols=12 Identities=17% Similarity=0.379 Sum_probs=6.3
Q ss_pred EeccCcHHHHHH
Q 003887 409 FSATMPRKVEKL 420 (789)
Q Consensus 409 ~SATl~~~v~~l 420 (789)
|+..||+.+..|
T Consensus 1 mt~~lPp~L~~l 12 (437)
T 3pgw_S 1 MTQFLPPNLLAL 12 (437)
T ss_pred CCCcCCccHHHh
Confidence 345566665443
No 479
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=24.82 E-value=33 Score=37.64 Aligned_cols=53 Identities=17% Similarity=0.141 Sum_probs=28.5
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHHHH-HH-HHHHcCCCEEEEccCCChhhHH
Q 003887 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQ-AL-PIILSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 223 pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~~-ai-~~il~grdvl~~a~TGsGKTla 278 (789)
|-.+|+++.-...+.+.|...-. .|.+.. .+ ......+.+|+.+|+|+|||+.
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~l 183 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 183 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHhhccCCCCceEEEECCCCCCHHHH
Confidence 44678887655565555543200 000000 00 0011236799999999999975
No 480
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=24.82 E-value=38 Score=32.18 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=13.2
Q ss_pred CEEEEccCCChhhHH
Q 003887 264 DIIGIAKTGSGKTAA 278 (789)
Q Consensus 264 dvl~~a~TGsGKTla 278 (789)
-+++++++|||||++
T Consensus 17 ~I~l~G~~GsGKsT~ 31 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQ 31 (203)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999976
No 481
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=24.78 E-value=1.2e+02 Score=26.43 Aligned_cols=48 Identities=21% Similarity=0.172 Sum_probs=33.4
Q ss_pred CCCCCCcEEEEecc------cccHHHHHHHHHHcCCc---eeeccCCCCHHHHHHHH
Q 003887 466 GMIDDGDVLVFASK------KTTVDEIESQLAQKGFK---AAALHGDKDQASRMEIL 513 (789)
Q Consensus 466 ~~~~~~kvLVF~~s------~~~a~~l~~~L~~~g~~---v~~lhg~~~~~eR~~~l 513 (789)
......+|+||..+ --.|..+...|...++. +..+.=......+....
T Consensus 11 ~~i~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~ 67 (121)
T 3gx8_A 11 DAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIK 67 (121)
T ss_dssp HHHHSCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHH
T ss_pred HHhccCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHH
Confidence 33456799999984 67899999999999887 55554444554444443
No 482
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=24.72 E-value=66 Score=34.17 Aligned_cols=26 Identities=8% Similarity=0.101 Sum_probs=15.6
Q ss_pred CHHHHHHHHhhccccccceeEEEEccc
Q 003887 355 TPGRLIDMLKMKALTMSRVTYLVLDEA 381 (789)
Q Consensus 355 Tp~~L~~~l~~~~~~l~~i~~lVlDEa 381 (789)
++..+..++..-. .+..+++||||=.
T Consensus 243 ~~~~~~~ll~~l~-~~~~yD~VIID~p 268 (373)
T 3fkq_A 243 SYADIDTLIGNIQ-GMDNYDEIIVDLP 268 (373)
T ss_dssp CHHHHHHHHHHHH-HTSCCSEEEEECC
T ss_pred CHHHHHHHHHHHH-hcCCCCEEEEeCC
Confidence 5555555554322 2457899999944
No 483
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=24.65 E-value=71 Score=33.09 Aligned_cols=47 Identities=11% Similarity=0.229 Sum_probs=39.9
Q ss_pred CcEEEEecc-----------cccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhc
Q 003887 471 GDVLVFASK-----------KTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKS 518 (789)
Q Consensus 471 ~kvLVF~~s-----------~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~ 518 (789)
+-+|||+|. ..+++.|.+.|+..||.|. ++.+++..+-..+++.|..
T Consensus 61 r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~ 118 (302)
T 3e4c_A 61 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 118 (302)
T ss_dssp CEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred cEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHh
Confidence 358999988 4578999999999999965 5568999999999999964
No 484
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=24.61 E-value=67 Score=39.27 Aligned_cols=87 Identities=14% Similarity=0.063 Sum_probs=56.4
Q ss_pred EEecCCCcchHHHH-HHhcCCCCCCCcEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEE
Q 003887 447 VHVIPSDAEKLPWL-LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLI 525 (789)
Q Consensus 447 ~~~~~~~~~k~~~L-~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLV 525 (789)
+...+....|-... +.++.......++||.++++.-+...+..|......+..++|+.+.. ....|+|
T Consensus 105 LV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vglltGd~~~~-----------~~~~IvV 173 (1010)
T 2xgj_A 105 LVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITIN-----------PDAGCLV 173 (1010)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEEECSSCEEC-----------TTCSEEE
T ss_pred EEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEEEeCCCccC-----------CCCCEEE
Confidence 34445556664432 22222122456899999999999999988887655889999987632 3568999
Q ss_pred eeh-----hhhcc-CCCCCccEEEE
Q 003887 526 ATD-----VAARG-LDIKSIKSVVN 544 (789)
Q Consensus 526 aT~-----v~~~G-lDI~~v~~VI~ 544 (789)
+|. .+.++ ..+..+.+||.
T Consensus 174 ~Tpe~L~~~L~~~~~~l~~l~lVVi 198 (1010)
T 2xgj_A 174 MTTEILRSMLYRGSEVMREVAWVIF 198 (1010)
T ss_dssp EEHHHHHHHHHHTCTTGGGEEEEEE
T ss_pred EcHHHHHHHHHcCcchhhcCCEEEE
Confidence 984 22333 45666777764
No 485
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=24.46 E-value=44 Score=32.20 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=17.1
Q ss_pred CEEEEccCCChhhHHHHHHHHHHHhc
Q 003887 264 DIIGIAKTGSGKTAAFVLPMIVHIMD 289 (789)
Q Consensus 264 dvl~~a~TGsGKTla~llp~l~~l~~ 289 (789)
-.++++++|+|||.. +-++..++.
T Consensus 25 ~~~I~G~NgsGKSti--l~ai~~~l~ 48 (203)
T 3qks_A 25 INLIIGQNGSGKSSL--LDAILVGLY 48 (203)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHHH
T ss_pred eEEEEcCCCCCHHHH--HHHHHHHhc
Confidence 357889999999975 444555544
No 486
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=24.46 E-value=38 Score=32.73 Aligned_cols=16 Identities=25% Similarity=0.179 Sum_probs=13.6
Q ss_pred CCEEEEccCCChhhHH
Q 003887 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvl~~a~TGsGKTla 278 (789)
..+.+.+++|||||+.
T Consensus 6 ~~i~i~G~~GsGKSTl 21 (227)
T 1cke_A 6 PVITIDGPSGAGKGTL 21 (227)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4578899999999975
No 487
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=24.36 E-value=39 Score=32.69 Aligned_cols=16 Identities=38% Similarity=0.569 Sum_probs=14.1
Q ss_pred CCEEEEccCCChhhHH
Q 003887 263 RDIIGIAKTGSGKTAA 278 (789)
Q Consensus 263 rdvl~~a~TGsGKTla 278 (789)
..+++.+++|||||++
T Consensus 6 ~~I~l~G~~GsGKsT~ 21 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQ 21 (217)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4688999999999986
No 488
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=24.26 E-value=40 Score=35.87 Aligned_cols=20 Identities=25% Similarity=0.473 Sum_probs=15.4
Q ss_pred EEEEccCCChhhHHHHHHHHHH
Q 003887 265 IIGIAKTGSGKTAAFVLPMIVH 286 (789)
Q Consensus 265 vl~~a~TGsGKTla~llp~l~~ 286 (789)
.+++++||+|||.. +=++..
T Consensus 28 ~vi~G~NGaGKT~i--leAI~~ 47 (371)
T 3auy_A 28 VAIIGENGSGKSSI--FEAVFF 47 (371)
T ss_dssp EEEEECTTSSHHHH--HHHHHH
T ss_pred EEEECCCCCCHHHH--HHHHHH
Confidence 67899999999975 444554
No 489
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=24.20 E-value=46 Score=36.73 Aligned_cols=17 Identities=35% Similarity=0.448 Sum_probs=14.9
Q ss_pred CCCEEEEccCCChhhHH
Q 003887 262 GRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 262 grdvl~~a~TGsGKTla 278 (789)
..++|+.+++|+|||..
T Consensus 201 ~~~~LL~G~pG~GKT~l 217 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAI 217 (468)
T ss_dssp SCEEEEESCTTTTTHHH
T ss_pred CCCeEEECCCCCCHHHH
Confidence 35799999999999975
No 490
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=24.13 E-value=40 Score=30.75 Aligned_cols=15 Identities=33% Similarity=0.255 Sum_probs=13.1
Q ss_pred CEEEEccCCChhhHH
Q 003887 264 DIIGIAKTGSGKTAA 278 (789)
Q Consensus 264 dvl~~a~TGsGKTla 278 (789)
.+++.+.+|||||.+
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTV 16 (168)
T ss_dssp EEEEESCTTSCHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 478899999999976
No 491
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=24.00 E-value=39 Score=32.56 Aligned_cols=15 Identities=27% Similarity=0.295 Sum_probs=13.3
Q ss_pred CEEEEccCCChhhHH
Q 003887 264 DIIGIAKTGSGKTAA 278 (789)
Q Consensus 264 dvl~~a~TGsGKTla 278 (789)
.+++.+++|||||++
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQ 16 (214)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999986
No 492
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=23.97 E-value=43 Score=34.76 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=19.5
Q ss_pred cCCCEEEEccCCChhhHHHHHHHHHHHh
Q 003887 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla~llp~l~~l~ 288 (789)
.|.-+.+++|+|+|||.. +-+|..++
T Consensus 125 ~Ge~vaIvGpsGsGKSTL--l~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSML--CNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHH--HHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHH--HHHHhhhc
Confidence 567788999999999964 44555554
No 493
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=23.95 E-value=38 Score=34.41 Aligned_cols=53 Identities=15% Similarity=0.255 Sum_probs=24.7
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHHH-HHHHHH--HcCCCEEEEccCCChhhHH
Q 003887 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQC-QALPII--LSGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 223 pi~sf~~~~l~~~l~~~l~~~g~~~ptpiQ~-~ai~~i--l~grdvl~~a~TGsGKTla 278 (789)
|-.+|++++-.+.+.+.|...= ..|+.. .++..+ .-.+.+++.+|+|+|||+.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp -------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 3456777776666666554320 111111 112111 1124599999999999974
No 494
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=23.92 E-value=40 Score=32.09 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=15.2
Q ss_pred cCCCEEEEccCCChhhHH
Q 003887 261 SGRDIIGIAKTGSGKTAA 278 (789)
Q Consensus 261 ~grdvl~~a~TGsGKTla 278 (789)
.+.-+++++..|||||++
T Consensus 9 ~~~~I~l~G~~GsGKST~ 26 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQ 26 (212)
T ss_dssp CSCEEEEEESTTSSHHHH
T ss_pred cCCEEEEEcCCCCCHHHH
Confidence 355688999999999986
No 495
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=23.83 E-value=1.1e+02 Score=28.98 Aligned_cols=48 Identities=10% Similarity=0.225 Sum_probs=39.3
Q ss_pred CCcEEEEeccc-----------ccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhc
Q 003887 470 DGDVLVFASKK-----------TTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKS 518 (789)
Q Consensus 470 ~~kvLVF~~s~-----------~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~ 518 (789)
.+.+|||.+.. .+++.|.+.|+..||.|. ++.+++..+-..+++.|..
T Consensus 43 ~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~f~~ 101 (178)
T 2h54_A 43 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 101 (178)
T ss_dssp CCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred CCEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHh
Confidence 34578887763 578999999999999975 5678999999999999964
No 496
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=23.74 E-value=37 Score=30.32 Aligned_cols=37 Identities=8% Similarity=0.288 Sum_probs=31.6
Q ss_pred CCCcEEEEecccccHHHHHHHHHHcCCc-eeeccCCCC
Q 003887 469 DDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKD 505 (789)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~-v~~lhg~~~ 505 (789)
...+++|||.+-..+..++..|...|+. +..|.|++.
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 3568999999988889999999999995 888888864
No 497
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=23.72 E-value=33 Score=32.24 Aligned_cols=14 Identities=36% Similarity=0.344 Sum_probs=12.5
Q ss_pred EEEEccCCChhhHH
Q 003887 265 IIGIAKTGSGKTAA 278 (789)
Q Consensus 265 vl~~a~TGsGKTla 278 (789)
+++.++.|||||++
T Consensus 3 I~l~G~~GsGKsT~ 16 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQ 16 (197)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999986
No 498
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=23.67 E-value=4.2e+02 Score=24.97 Aligned_cols=86 Identities=17% Similarity=0.064 Sum_probs=0.0
Q ss_pred EEEEccCCChhhHHHHHHHHHHHhcCcccccCCCCEEEE--EcCcHHHHHHHHH-----------HHHHHhhhcCcEEEE
Q 003887 265 IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI--CAPTRELAHQIYL-----------ETKKFAKSHGIRVSA 331 (789)
Q Consensus 265 vl~~a~TGsGKTla~llp~l~~l~~~~~~~~~~gp~vLI--l~PTreLa~Qi~~-----------~~~k~~~~~~i~v~~ 331 (789)
.+....-|.|||...+..+.... ..| ++|+ +-|...+...... .+..+...+++-++-
T Consensus 4 ~v~s~KGGvGKTT~a~~LA~~la--------~~g-~VlliD~D~q~~~~~~~~~~~l~~~vi~~~~l~~l~~~yD~viiD 74 (209)
T 3cwq_A 4 TVASFKGGVGKTTTAVHLSAYLA--------LQG-ETLLIDGDPNRSATGWGKRGSLPFKVVDERQAAKYAPKYQNIVID 74 (209)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHH--------TTS-CEEEEEECTTCHHHHHHHHSCCSSEEEEGGGHHHHGGGCSEEEEE
T ss_pred EEEcCCCCCcHHHHHHHHHHHHH--------hcC-CEEEEECCCCCCHHHHhcCCCCCcceeCHHHHHHhhhcCCEEEEe
Q ss_pred EEcC-CChHHHHHHHhcCCcEEEeCHHHH
Q 003887 332 VYGG-MSKLDQFKELKAGCEIVIATPGRL 359 (789)
Q Consensus 332 ~~gg-~~~~~~~~~l~~~~dIiV~Tp~~L 359 (789)
.-++ ........-.....-|++++|...
T Consensus 75 ~p~~~~~~~~~~~l~~aD~viiv~~~~~~ 103 (209)
T 3cwq_A 75 TQARPEDEDLEALADGCDLLVIPSTPDAL 103 (209)
T ss_dssp EECCCSSSHHHHHHHTSSEEEEEECSSHH
T ss_pred CCCCcCcHHHHHHHHHCCEEEEEecCCch
No 499
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=23.25 E-value=30 Score=32.57 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=0.0
Q ss_pred EEEEccCCChhhHHHHHHH
Q 003887 265 IIGIAKTGSGKTAAFVLPM 283 (789)
Q Consensus 265 vl~~a~TGsGKTla~llp~ 283 (789)
+.+++++|||||+...+.+
T Consensus 5 v~IvG~SGsGKSTL~~~L~ 23 (171)
T 2f1r_A 5 LSIVGTSDSGKTTLITRMM 23 (171)
T ss_dssp EEEEESCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
No 500
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=23.25 E-value=41 Score=31.92 Aligned_cols=19 Identities=21% Similarity=0.132 Sum_probs=0.0
Q ss_pred EEEEccCCChhhHHHHHHH
Q 003887 265 IIGIAKTGSGKTAAFVLPM 283 (789)
Q Consensus 265 vl~~a~TGsGKTla~llp~ 283 (789)
+.+++++|||||+..-+.+
T Consensus 4 i~i~G~~GsGKSTl~~~L~ 22 (204)
T 2if2_A 4 IGLTGNIGCGKSTVAQMFR 22 (204)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHH
Done!