BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003888
(788 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 197 bits (501), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 197/695 (28%), Positives = 308/695 (44%), Gaps = 101/695 (14%)
Query: 71 CSLMHLQELYIDNNDLRGSLPW--CLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 128
CS L L + N L G + L + + L+ L+VSSN L S + L S+E L
Sbjct: 95 CS-ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 153
Query: 129 MLSNNHFQIPISLEPLFNH--SRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGY 186
LS N + + + LK + N+I ++ S + + + + S+G
Sbjct: 154 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGI 213
Query: 187 GDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPF-RLPI 245
FL L+ + +S + G+F + + T+L+ L + ++ GP LP+
Sbjct: 214 -------PFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGPIPPLPL 265
Query: 246 HSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFG---------- 295
S L++L ++ N F G IP + +L ++S N ++P FG
Sbjct: 266 KS---LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 322
Query: 296 ---------------NMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHM- 339
M L++LDLS N+ +GE+PE L +L L LS+NN G +
Sbjct: 323 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 382
Query: 340 --FSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGL 397
+N T L+ L L+ N G+IP +LS CS L L+L+ N LSG IP LG+L+ L
Sbjct: 383 PNLCQNPKNT-LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 441
Query: 398 KHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQ 457
+ + + N LEG IP + +L+ L + N+++G +PS
Sbjct: 442 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS----------------- 484
Query: 458 LKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVXXXXXXXX 517
+C++L + LS NRL G IP W+ L L+ L L +N+ G +P
Sbjct: 485 -------NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 537
Query: 518 XXXXXXXXXXHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHEN---F 574
+G IP + ++N + + D M +K+ H
Sbjct: 538 IWLDLNTNLFNGTIPAAMFKQSGKIAAN--FIAGKRYVYIKNDGM----KKECHGAGNLL 591
Query: 575 EF-----------TTKN----IAYIYQGKVLSLLSG------LDLSCNKLIGHIPPQIGN 613
EF +T+N + +Y G LD+S N L G+IP +IG+
Sbjct: 592 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 651
Query: 614 LTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYN 673
+ + LNL HN+++G IP +L+ + LDLS NKL+G+IP + L L ++ N
Sbjct: 652 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 711
Query: 674 NLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPIC 708
NLSG IPE QF TF + + N LCG PLP C
Sbjct: 712 NLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRC 745
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 149/475 (31%), Positives = 207/475 (43%), Gaps = 52/475 (10%)
Query: 251 LRFLDVSNNNFQGHIPVEIGDILPS---LISFNISMNALDSSIPSSFG-NMNFLQILDLS 306
L LD+S N+ G PV L S L N+S N LD S G +N L++LDLS
Sbjct: 99 LTSLDLSRNSLSG--PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 156
Query: 307 NNQLTGE--IPEHLAVSCVNLEFLALSNNNLKGHM-FSRNFNLTNLRSLQLEGNHLEGEI 363
N ++G + L+ C L+ LA+S N + G + SR NL L + N+ I
Sbjct: 157 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSR---CVNLEFLDVSSNNFSTGI 213
Query: 364 PQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQI 423
P L CS+L+ L ++ N LSG R + T LK + + N GPIP L SLQ
Sbjct: 214 P-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQY 270
Query: 424 LDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSI 483
L +++N +G +P + L G C +L LDLS N G++
Sbjct: 271 LSLAENKFTGEIP---------------DFLSGA--------CDTLTGLDLSGNHFYGAV 307
Query: 484 PNWVDGLSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXX-HGPIPPCFDNT---- 538
P + S L L L NN GE+P+ G +P N
Sbjct: 308 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 367
Query: 539 -TLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLD 597
TL SSNN P +L + E + N FT K + S L L
Sbjct: 368 LTLDLSSNNFSG--PILPNLCQNPKNTLQELYLQNN-GFTGKIPPTLSN---CSELVSLH 421
Query: 598 LSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPH 657
LS N L G IP +G+L++++ L L N L G IP +K +E+L L +N L G+IP
Sbjct: 422 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 481
Query: 658 QLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP--LPICRS 710
L L S++ N L+GEIP+W + N+F +P L CRS
Sbjct: 482 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 536
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 128/449 (28%), Positives = 206/449 (45%), Gaps = 51/449 (11%)
Query: 275 SLISFNISMNALDSSIPS--SFGNMNFLQILDLSNNQLT--GEIPEHLAVSCVNLEFLAL 330
SL S ++S N+L + + S G+ + L+ L++S+N L G++ L ++ +LE L L
Sbjct: 98 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN--SLEVLDL 155
Query: 331 SNNNLKGH---MFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKI 387
S N++ G + + L+ L + GN + G++ +S+C +LE L +++N+ S I
Sbjct: 156 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGI 213
Query: 388 PRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPL-SIEQ 446
P +LG+ + L+H+ + N L G L++L+IS N G +P PL S++
Sbjct: 214 P-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQY 270
Query: 447 VHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGE 506
+ L++N G++ C +L LDLS N G++P + S L L L NN GE
Sbjct: 271 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 507 VPVXXXXXXXXXXXXXXXXXX-HGPIPPCFDNT-----TLHESSNNSYSLKPFETSLVMD 560
+P+ G +P N TL SSNN
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN------------FS 378
Query: 561 SMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTL 620
++P Q +N L L L N G IPP + N + + +L
Sbjct: 379 GPILPNLCQNPKN------------------TLQELYLQNNGFTGKIPPTLSNCSELVSL 420
Query: 621 NLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIP 680
+LS N L+G IPS+ +L + L L N L G+IP +L+ +KTL + +N+L+GEIP
Sbjct: 421 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 480
Query: 681 EWTAQFATFNESSYEGNTFLCGLPLPICR 709
+ N S N +P I R
Sbjct: 481 SGLSNCTNLNWISLSNNRLTGEIPKWIGR 509
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 118/397 (29%), Positives = 184/397 (46%), Gaps = 44/397 (11%)
Query: 70 LCSLMHLQELYIDNNDLRGSLPWCLANMT-SLRILDVSSNQLTGSISSSPLVH-LTSIEE 127
L + L+ L + N+ G LP L N++ SL LD+SSN +G I + + +++E
Sbjct: 336 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 395
Query: 128 LMLSNNHF--QIPISLEPLFNHSRLKIFDAANNEIKAEITES-HSLTAPNFQLQALSLSS 184
L L NN F +IP +L N S L + N + I S SL+ +L+ L L
Sbjct: 396 LYLQNNGFTGKIPPTLS---NCSELVSLHLSFNYLSGTIPSSLGSLS----KLRDLKLWL 448
Query: 185 GYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLP 244
+G P+ L + LE + L ++ GE P+ L N T L + L N+ LTG
Sbjct: 449 NMLEG-EIPQELMYVKTLETLILDFNDLTGEIPSGL-SNCTNLNWISLSNNRLTGEIPKW 506
Query: 245 IHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILD 304
I L L +SNN+F G+IP E+GD SLI +++ N + +IP++ F Q
Sbjct: 507 IGRLENLAILKLSNNSFSGNIPAELGDCR-SLIWLDLNTNLFNGTIPAAM----FKQSGK 561
Query: 305 LSNNQLTGEIPEHLAVSCVN---------LEFLALSNNNLK----------------GHM 339
++ N + G+ ++ + LEF + + L GH
Sbjct: 562 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 621
Query: 340 FSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKH 399
N ++ L + N L G IP+ + L L L +N +SG IP +G+L GL
Sbjct: 622 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI 681
Query: 400 IIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLP 436
+ + N L+G IP L L +D+S+NN+SG +P
Sbjct: 682 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 93/330 (28%), Positives = 137/330 (41%), Gaps = 50/330 (15%)
Query: 68 QGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEE 127
Q L + L+ L +D NDL G +P L+N T+L + +S+N+LTG I + L ++
Sbjct: 457 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAI 515
Query: 128 LMLSNNHFQIPISLEPLFNHSRLKIFDAA----NNEIKAEITESHSLTAPNFQLQALSLS 183
L LSNN F I E L + L D N I A + + A NF
Sbjct: 516 LKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF-------- 566
Query: 184 SGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLE--NNTKLRQLYLVNDSLTGPF 241
+ +++Y ++D EF E N R + + G
Sbjct: 567 ------IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 620
Query: 242 RLPIHSHRW-LRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFL 300
P + + FLD+S N G+IP EIG +P L N+ N + SIP G++ L
Sbjct: 621 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS-MPYLFILNLGHNDISGSIPDEVGDLRGL 679
Query: 301 QILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLE 360
ILDLS+N+L G IP+ ++ LT L + L N+L
Sbjct: 680 NILDLSSNKLDGRIPQAMSA-------------------------LTMLTEIDLSNNNLS 714
Query: 361 GEIPQSLSKCSSLEGLYLNNNSLSG-KIPR 389
G IP+ + +LNN L G +PR
Sbjct: 715 GPIPEMGQFETFPPAKFLNNPGLCGYPLPR 744
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 197 bits (501), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 197/695 (28%), Positives = 308/695 (44%), Gaps = 101/695 (14%)
Query: 71 CSLMHLQELYIDNNDLRGSLPW--CLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 128
CS L L + N L G + L + + L+ L+VSSN L S + L S+E L
Sbjct: 98 CS-ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156
Query: 129 MLSNNHFQIPISLEPLFNH--SRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGY 186
LS N + + + LK + N+I ++ S + + + + S+G
Sbjct: 157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGI 216
Query: 187 GDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPF-RLPI 245
FL L+ + +S + G+F + + T+L+ L + ++ GP LP+
Sbjct: 217 -------PFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGPIPPLPL 268
Query: 246 HSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFG---------- 295
S L++L ++ N F G IP + +L ++S N ++P FG
Sbjct: 269 KS---LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325
Query: 296 ---------------NMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHM- 339
M L++LDLS N+ +GE+PE L +L L LS+NN G +
Sbjct: 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385
Query: 340 --FSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGL 397
+N T L+ L L+ N G+IP +LS CS L L+L+ N LSG IP LG+L+ L
Sbjct: 386 PNLCQNPKNT-LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 444
Query: 398 KHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQ 457
+ + + N LEG IP + +L+ L + N+++G +PS
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS----------------- 487
Query: 458 LKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVXXXXXXXX 517
+C++L + LS NRL G IP W+ L L+ L L +N+ G +P
Sbjct: 488 -------NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540
Query: 518 XXXXXXXXXXHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHEN---F 574
+G IP + ++N + + D M +K+ H
Sbjct: 541 IWLDLNTNLFNGTIPAAMFKQSGKIAAN--FIAGKRYVYIKNDGM----KKECHGAGNLL 594
Query: 575 EF-----------TTKN----IAYIYQGKVLSLLSG------LDLSCNKLIGHIPPQIGN 613
EF +T+N + +Y G LD+S N L G+IP +IG+
Sbjct: 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 654
Query: 614 LTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYN 673
+ + LNL HN+++G IP +L+ + LDLS NKL+G+IP + L L ++ N
Sbjct: 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714
Query: 674 NLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPIC 708
NLSG IPE QF TF + + N LCG PLP C
Sbjct: 715 NLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRC 748
Score = 124 bits (310), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 149/475 (31%), Positives = 207/475 (43%), Gaps = 52/475 (10%)
Query: 251 LRFLDVSNNNFQGHIPVEIGDILPS---LISFNISMNALDSSIPSSFG-NMNFLQILDLS 306
L LD+S N+ G PV L S L N+S N LD S G +N L++LDLS
Sbjct: 102 LTSLDLSRNSLSG--PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159
Query: 307 NNQLTGE--IPEHLAVSCVNLEFLALSNNNLKGHM-FSRNFNLTNLRSLQLEGNHLEGEI 363
N ++G + L+ C L+ LA+S N + G + SR NL L + N+ I
Sbjct: 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSR---CVNLEFLDVSSNNFSTGI 216
Query: 364 PQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQI 423
P L CS+L+ L ++ N LSG R + T LK + + N GPIP L SLQ
Sbjct: 217 P-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQY 273
Query: 424 LDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSI 483
L +++N +G +P + L G C +L LDLS N G++
Sbjct: 274 LSLAENKFTGEIP---------------DFLSGA--------CDTLTGLDLSGNHFYGAV 310
Query: 484 PNWVDGLSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXX-HGPIPPCFDNT---- 538
P + S L L L NN GE+P+ G +P N
Sbjct: 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 370
Query: 539 -TLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLD 597
TL SSNN P +L + E + N FT K + S L L
Sbjct: 371 LTLDLSSNNFSG--PILPNLCQNPKNTLQELYLQNN-GFTGKIPPTLSN---CSELVSLH 424
Query: 598 LSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPH 657
LS N L G IP +G+L++++ L L N L G IP +K +E+L L +N L G+IP
Sbjct: 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484
Query: 658 QLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP--LPICRS 710
L L S++ N L+GEIP+W + N+F +P L CRS
Sbjct: 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 539
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 128/449 (28%), Positives = 206/449 (45%), Gaps = 51/449 (11%)
Query: 275 SLISFNISMNALDSSIPS--SFGNMNFLQILDLSNNQLT--GEIPEHLAVSCVNLEFLAL 330
SL S ++S N+L + + S G+ + L+ L++S+N L G++ L ++ +LE L L
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN--SLEVLDL 158
Query: 331 SNNNLKGH---MFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKI 387
S N++ G + + L+ L + GN + G++ +S+C +LE L +++N+ S I
Sbjct: 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGI 216
Query: 388 PRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPL-SIEQ 446
P +LG+ + L+H+ + N L G L++L+IS N G +P PL S++
Sbjct: 217 P-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQY 273
Query: 447 VHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGE 506
+ L++N G++ C +L LDLS N G++P + S L L L NN GE
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 507 VPVXXXXXXXXXXXXXXXXXX-HGPIPPCFDNT-----TLHESSNNSYSLKPFETSLVMD 560
+P+ G +P N TL SSNN
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN------------FS 381
Query: 561 SMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTL 620
++P Q +N L L L N G IPP + N + + +L
Sbjct: 382 GPILPNLCQNPKN------------------TLQELYLQNNGFTGKIPPTLSNCSELVSL 423
Query: 621 NLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIP 680
+LS N L+G IPS+ +L + L L N L G+IP +L+ +KTL + +N+L+GEIP
Sbjct: 424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483
Query: 681 EWTAQFATFNESSYEGNTFLCGLPLPICR 709
+ N S N +P I R
Sbjct: 484 SGLSNCTNLNWISLSNNRLTGEIPKWIGR 512
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 120/401 (29%), Positives = 185/401 (46%), Gaps = 52/401 (12%)
Query: 70 LCSLMHLQELYIDNNDLRGSLPWCLANMT-SLRILDVSSNQLTGSISSSPLVHLT----- 123
L + L+ L + N+ G LP L N++ SL LD+SSN +G I L +L
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI----LPNLCQNPKN 394
Query: 124 SIEELMLSNNHF--QIPISLEPLFNHSRLKIFDAANNEIKAEITES-HSLTAPNFQLQAL 180
+++EL L NN F +IP +L N S L + N + I S SL+ +L+ L
Sbjct: 395 TLQELYLQNNGFTGKIPPTLS---NCSELVSLHLSFNYLSGTIPSSLGSLS----KLRDL 447
Query: 181 SLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGP 240
L +G P+ L + LE + L ++ GE P+ L N T L + L N+ LTG
Sbjct: 448 KLWLNMLEG-EIPQELMYVKTLETLILDFNDLTGEIPSGL-SNCTNLNWISLSNNRLTGE 505
Query: 241 FRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFL 300
I L L +SNN+F G+IP E+GD SLI +++ N + +IP++ F
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCR-SLIWLDLNTNLFNGTIPAAM----FK 560
Query: 301 QILDLSNNQLTGEIPEHLAVSCVN---------LEFLALSNNNLK--------------- 336
Q ++ N + G+ ++ + LEF + + L
Sbjct: 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620
Query: 337 -GHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLT 395
GH N ++ L + N L G IP+ + L L L +N +SG IP +G+L
Sbjct: 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 680
Query: 396 GLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLP 436
GL + + N L+G IP L L +D+S+NN+SG +P
Sbjct: 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 93/330 (28%), Positives = 137/330 (41%), Gaps = 50/330 (15%)
Query: 68 QGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEE 127
Q L + L+ L +D NDL G +P L+N T+L + +S+N+LTG I + L ++
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAI 518
Query: 128 LMLSNNHFQIPISLEPLFNHSRLKIFDAA----NNEIKAEITESHSLTAPNFQLQALSLS 183
L LSNN F I E L + L D N I A + + A NF
Sbjct: 519 LKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF-------- 569
Query: 184 SGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLE--NNTKLRQLYLVNDSLTGPF 241
+ +++Y ++D EF E N R + + G
Sbjct: 570 ------IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623
Query: 242 RLPIHSHRW-LRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFL 300
P + + FLD+S N G+IP EIG +P L N+ N + SIP G++ L
Sbjct: 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS-MPYLFILNLGHNDISGSIPDEVGDLRGL 682
Query: 301 QILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLE 360
ILDLS+N+L G IP+ ++ LT L + L N+L
Sbjct: 683 NILDLSSNKLDGRIPQAMSA-------------------------LTMLTEIDLSNNNLS 717
Query: 361 GEIPQSLSKCSSLEGLYLNNNSLSG-KIPR 389
G IP+ + +LNN L G +PR
Sbjct: 718 GPIPEMGQFETFPPAKFLNNPGLCGYPLPR 747
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 100/255 (39%), Gaps = 52/255 (20%)
Query: 477 NRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXXHGPIPPCFD 536
N L G IP + L+QL +L + H N+ G +P G +PP
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP--- 143
Query: 537 NTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGL 596
S S P + D I I +++ G L + +
Sbjct: 144 ----------SISSLPNLVGITFDGNRI--SGAIPDSY------------GSFSKLFTSM 179
Query: 597 DLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSN------------------- 637
+S N+L G IPP NL + ++LS N L G F +
Sbjct: 180 TISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238
Query: 638 ----LKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESS 693
K++ LDL N++ G +P L +LK L +V++NNL GEIP+ F+ S+
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSA 297
Query: 694 YEGNTFLCGLPLPIC 708
Y N LCG PLP C
Sbjct: 298 YANNKCLCGSPLPAC 312
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 99/243 (40%), Gaps = 49/243 (20%)
Query: 290 IPSSFGNMNFLQILDLSN-NQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTN 348
IPSS N+ +L L + N L G IP +A LT
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIA-------------------------KLTQ 102
Query: 349 LRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLE 408
L L + ++ G IP LS+ +L L + N+LSG +P + +L L I N +
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 409 GPIPVGFCQLYSL-QILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQ---------- 457
G IP + L + IS N ++G +P F L++ V LS+NML G
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222
Query: 458 ------------LKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEG 505
G +L LDL NR+ G++P + L L L + NNL G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
Query: 506 EVP 508
E+P
Sbjct: 283 EIP 285
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 112/221 (50%), Gaps = 16/221 (7%)
Query: 225 TKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMN 284
T+L LY+ + +++G + + L LD S N G +P I LP+L+ N
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS-LPNLVGITFDGN 159
Query: 285 ALDSSIPSSFGNMNFL-QILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRN 343
+ +IP S+G+ + L + +S N+LTG+IP A +NL F+ LS N L+G
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN--LNLAFVDLSRNMLEGDASVLF 217
Query: 344 FNLTNLRSLQLEGNHLEGEIPQ-SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIM 402
+ N + + L N L ++ + LSK +L GL L NN + G +P+ L L L + +
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLGKVGLSK--NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275
Query: 403 PENHLEGPIPVGFCQLYSLQILDIS----DNNISGS-LPSC 438
N+L G IP G +LQ D+S + + GS LP+C
Sbjct: 276 SFNNLCGEIPQG----GNLQRFDVSAYANNKCLCGSPLPAC 312
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 607 IPPQIGNLTRIQTLNLSH-NNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTL 665
IP + NL + L + NNL G IP + L + L +++ ++G IP L ++KTL
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 666 AVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP 704
+YN LSG +P + +++GN +P
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 8/137 (5%)
Query: 615 TRIQTLNLSHNNLTGL-------IPSTFSNLKHIESLDLS-YNKLNGKIPHQLVELKTLA 666
T QT +++ +L+GL IPS+ +NL ++ L + N L G IP + +L L
Sbjct: 45 TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104
Query: 667 VFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNERDDN 726
+ + N+SG IP++ +Q T + N LP I P + GN
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164
Query: 727 LIDIDSFFITFTTSYVV 743
+ D F TS +
Sbjct: 165 IPDSYGSFSKLFTSMTI 181
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 40/244 (16%)
Query: 69 GLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSI--SSSPLVHLTSIE 126
+ L L LYI + ++ G++P L+ + +L LD S N L+G++ S S L +L I
Sbjct: 96 AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155
Query: 127 ELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGY 186
FD N I I +S+ + F ++++S
Sbjct: 156 --------------------------FDG--NRISGAIPDSYGSFSKLF--TSMTISRNR 185
Query: 187 GDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRL-PI 245
G P F +L V LS ++G+ + L ++ ++++L +SL F L +
Sbjct: 186 LTGKIPPTF--ANLNLAFVDLSRNMLEGD-ASVLFGSDKNTQKIHLAKNSLA--FDLGKV 240
Query: 246 HSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDL 305
+ L LD+ NN G +P + L L S N+S N L IP GN+ +
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAY 298
Query: 306 SNNQ 309
+NN+
Sbjct: 299 ANNK 302
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 139/307 (45%), Gaps = 42/307 (13%)
Query: 58 LGTNSSRILDQG-LCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISS 116
LG N + L+Q S HL+EL ++ N + P N+ +LR L + SN+L I
Sbjct: 39 LGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPL 97
Query: 117 SPLVHLTSIEELMLSNNHFQIPISLEPLFNH-SRLKIFDAANNEIKAEITESHSLTAPNF 175
L+++ +L +S N +I I L+ +F LK + +N++ + SH +
Sbjct: 98 GVFTGLSNLTKLDISEN--KIVILLDYMFQDLYNLKSLEVGDNDL---VYISHRAFSGLN 152
Query: 176 QLQALSLSSGYGDGVTFP-KFLYHQHDLEDVRLSHVNMDG---------------EFPNW 219
L+ L+L + + P + L H H L +RL H+N++ E +W
Sbjct: 153 SLEQLTLEK--CNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210
Query: 220 -LLENNT-------KLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNN---NFQGHIPVE 268
L+ T L L + + +LT L + +LRFL++S N +G + E
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270
Query: 269 IGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFL 328
L L + L P +F +N+L++L++S NQLT + E + S NLE L
Sbjct: 271 ----LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETL 325
Query: 329 ALSNNNL 335
L +N L
Sbjct: 326 ILDSNPL 332
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 105/233 (45%), Gaps = 16/233 (6%)
Query: 252 RFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLT 311
R LD+ N + E P L ++ N + + P +F N+ L+ L L +N+L
Sbjct: 35 RLLDLGKNRIKTLNQDEFAS-FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93
Query: 312 GEIPEHLAVSCVNLEFLALSNNN---LKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLS 368
IP + NL L +S N L +MF +L NL+SL++ N L ++ S
Sbjct: 94 -LIPLGVFTGLSNLTKLDISENKIVILLDYMFQ---DLYNLKSLEVGDNDLVYISHRAFS 149
Query: 369 KCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISD 428
+SLE L L +L+ L +L GL + + ++ F +LY L++L+IS
Sbjct: 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209
Query: 429 -NNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVT---LDLSYN 477
+ P+C + L++ + ++ H L + LV L+LSYN
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSIT----HCNLTAVPYLAVRHLVYLRFLNLSYN 258
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 48 LKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSS 107
L++L++S + + T +L + L+ LQE+ + L P+ + LR+L+VS
Sbjct: 250 LRFLNLSYNPISTIEGSMLHE----LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG 305
Query: 108 NQLTGSISSSPLVHLTSIEELMLSNN 133
NQLT ++ S + ++E L+L +N
Sbjct: 306 NQLT-TLEESVFHSVGNLETLILDSN 330
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Query: 564 IPAEKQIHENFEFTTKNIAYIYQGKVLSL--LSGLDLSCNKLIGHIPPQIGNLTRIQTLN 621
IP E ++ + I + Q + S L L+L+ N + P NL ++TL
Sbjct: 30 IPTETRL---LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLG 86
Query: 622 LSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNL 675
L N L + F+ L ++ LD+S NK+ + + +L L V N+L
Sbjct: 87 LRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%)
Query: 590 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN 649
LS L+ LD+S NK++ + +L +++L + N+L + FS L +E L L
Sbjct: 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162
Query: 650 KLNGKIPHQLVELKTLAVFSVAYNNLSG 677
L L L L V + + N++
Sbjct: 163 NLTSIPTEALSHLHGLIVLRLRHLNINA 190
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 110/250 (44%), Gaps = 17/250 (6%)
Query: 275 SLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLA--VSCVNLEFLALSN 332
SL ++S N L P F + L L L+N QL + E L +S +++ L+L+N
Sbjct: 172 SLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLAN 231
Query: 333 NNLKGHMFS--RNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRW 390
N L S TNL L L N+L S S SL L L N++ PR
Sbjct: 232 NQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRS 291
Query: 391 LGNLTGLKHIIMPENHLEGPIPVG---------FCQLYSLQILDISDNNISGSLPSCFHP 441
L+ L+++ + + + + F L L+ L++ DNNI + + F
Sbjct: 292 FYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTG 351
Query: 442 L-SIEQVHLSKNMLHGQ-LKRGTFFHC--SSLVTLDLSYNRLNGSIPNWVDGLSQLSHLI 497
L S++ + LSK Q L TF S L+TL+L+ N ++ L QL L
Sbjct: 352 LVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILD 411
Query: 498 LGHNNLEGEV 507
LG N +E ++
Sbjct: 412 LGLNEIEQKL 421
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 114/286 (39%), Gaps = 33/286 (11%)
Query: 402 MPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQV-HLSKNMLHGQLKR 460
+ N L P F + L ILD N+IS P L + +V +L N L Q+
Sbjct: 32 LTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNEL-SQISD 90
Query: 461 GTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVXXXXXXXXXXX 520
TF C++L LDL N ++ N L L L HN L
Sbjct: 91 QTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSS--------------- 135
Query: 521 XXXXXXXHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKN 580
G + L + N +L+ E + +S + + + EF+
Sbjct: 136 -----TKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGC 190
Query: 581 IAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIG---NLTRIQTLNLSHNNLTGLIPSTFSN 637
I GK+ +LL L+ +L H+ ++ + T IQ L+L++N L STFS
Sbjct: 191 FQTI--GKLFALL----LNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSG 244
Query: 638 LK--HIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPE 681
LK ++ LDLSYN L+ L +L S+ YNN+ P
Sbjct: 245 LKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPR 290
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 108/428 (25%), Positives = 163/428 (38%), Gaps = 53/428 (12%)
Query: 242 RLP---IHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMN 298
RLP + L LD N+ P E+ ILP L N+ N L +F
Sbjct: 39 RLPPTNFTRYSQLAILDAGFNSISKLEP-ELCQILPLLKVLNLQHNELSQISDQTFVFCT 97
Query: 299 FLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNH 358
L LDL +N + +I + + NL L LS+N L L NL+ L L N
Sbjct: 98 NLTELDLMSNSI-HKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNK 156
Query: 359 LEGEIPQSLS--KCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFC 416
+ + L SSL L L++N L P + L +++ L + C
Sbjct: 157 ILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLC 216
Query: 417 QLYS---LQILDISDNNISGSLPSCFHPLS---IEQVHLSKNMLHGQLKRGTFFHCSSLV 470
S +Q L +++N + + S F L + Q+ LS N LH + G+F + SL
Sbjct: 217 WELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLH-DVGNGSFSYLPSLR 275
Query: 471 TLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXXHGP 530
L L YN + P GLS L +L L + V +
Sbjct: 276 YLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASH------------------ 317
Query: 531 IPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVL 590
P D+ S+ + L MD IP+ K N ++ Y+ K
Sbjct: 318 --PNIDDF--------SFQWLKYLEYLNMDDNNIPSTK---SNTFTGLVSLKYLSLSKTF 364
Query: 591 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNK 650
+ L L + H P + TLNL+ N+++ + TFS L + LDL N+
Sbjct: 365 TSLQTLTNETFVSLAHSP--------LLTLNLTKNHISKIANGTFSWLGQLRILDLGLNE 416
Query: 651 LNGKIPHQ 658
+ K+ Q
Sbjct: 417 IEQKLSGQ 424
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 604 IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELK 663
+ HIP + + I LNL+HN L L P+ F+ + LD +N ++ P L
Sbjct: 16 LTHIPDDLP--SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILP 73
Query: 664 TLAVFSVAYNNLSGEIPEWTAQFAT 688
L V ++ +N LS +I + T F T
Sbjct: 74 LLKVLNLQHNELS-QISDQTFVFCT 97
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 75/178 (42%), Gaps = 36/178 (20%)
Query: 273 LPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSN 332
L L+ +++ +D S PS F + L ILDLSNN + I E L NLE L +
Sbjct: 456 LQRLMLRRVALKNVDIS-PSPFRPLRNLTILDLSNNNI-ANINEDLLEGLENLEILDFQH 513
Query: 333 NNLKGHMFSR-------NF--NLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSL 383
NNL ++ R NF L++L L LE N L+ EIP + K
Sbjct: 514 NNL-ARLWKRANPGGPVNFLKGLSHLHILNLESNGLD-EIPVGVFK-------------- 557
Query: 384 SGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHP 441
NL LK I + N+L P F SL+ L++ N I+ F P
Sbjct: 558 ---------NLFELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKNLITSVEKDVFGP 606
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 75/161 (46%), Gaps = 30/161 (18%)
Query: 346 LTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPEN 405
L N+R L L GN L +L + ++L L L N L LT LK +++ EN
Sbjct: 62 LPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 406 HLEGPIPVG-FCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFF 464
L+ +P G F +L +L L+++ N + SLP +G F
Sbjct: 120 QLQS-LPDGVFDKLTNLTYLNLAHNQLQ-SLP-----------------------KGVFD 154
Query: 465 HCSSLVTLDLSYNRLNGSIPNWV-DGLSQLSHLILGHNNLE 504
++L LDLSYN+L S+P V D L+QL L L N L+
Sbjct: 155 KLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK 194
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 614 LTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG---KIPHQLVELKTLAVF 668
LT + LNL+HN L L F L ++ LDLSYN+L + +L +LK L ++
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY 189
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 251 LRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQL 310
L+ L + N Q +P + D L +L N++ N L S F + L LDLS NQL
Sbjct: 111 LKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169
Query: 311 TGEIPEHLAVSCVNLEFLALSNNNLKG---HMFSRNFNLTNLRSLQLEGNHLEGEIP 364
+PE + L+ L L N LK +F R LT+L+ + L N + P
Sbjct: 170 QS-LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDR---LTSLQYIWLHDNPWDCTCP 222
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 128/291 (43%), Gaps = 31/291 (10%)
Query: 1 MFDCKVNGLVRGQGFPHFKSLDHLDMVFAR-TALNTSFLQIIRESMPSLKYLSMSDSTLG 59
M D + L G P + L+ L + + TA + L + K L +S++ L
Sbjct: 121 MGDAGLKLLCEGLQDPQCR-LEKLQLEYCNLTATSCEPLASVLRVKADFKELVLSNNDLH 179
Query: 60 TNSSRILDQGLC-SLMHLQELYIDNNDLRGS----LPWCLANMTSLRILDVSSNQL--TG 112
RIL QGL S L+ L ++N + + L +A+ SL+ LD+SSN+L G
Sbjct: 180 EPGVRILCQGLKDSACQLESLKLENCGITAANCKDLCDVVASKASLQELDLSSNKLGNAG 239
Query: 113 SISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSR-------LKIFDAANNEIKAEIT 165
+ P + L S + L ++ I+ E + R LK A+NE+K E
Sbjct: 240 IAALCPGLLLPSCKLRTLW--LWECDITAEGCKDLCRVLRAKQSLKELSLASNELKDEGA 297
Query: 166 E--SHSLTAPNFQLQALSLSSGYGDGVTFPKF---LYHQHDLEDVRLSH--VNMDG--EF 216
SL P QL++L + + + P F L L ++++S + +G E
Sbjct: 298 RLLCESLLEPGCQLESLWIKTCSLTAASCPYFCSVLTKSRSLLELQMSSNPLGDEGVQEL 357
Query: 217 PNWLLENNTKLRQLYL----VNDSLTGPFRLPIHSHRWLRFLDVSNNNFQG 263
L + +T LR+L+L V +S + ++R LR LD+SNN G
Sbjct: 358 CKALSQPDTVLRELWLGDCDVTNSGCSSLANVLLANRSLRELDLSNNCMGG 408
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 5/164 (3%)
Query: 347 TNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENH 406
+ + L L+ N L ++ + + L LYLN+N L L L+ + + +N
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96
Query: 407 LEGPIPVG-FCQLYSLQILDISDNNISGSLPSCFHPLS-IEQVHLSKNMLHGQLKRGTFF 464
L+ +P+G F QL +L L + N + P F L+ + + L N L L +G F
Sbjct: 97 LQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFD 154
Query: 465 HCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVP 508
+SL L L N+L D L++L L L +N L+ VP
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVP 197
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 90/223 (40%), Gaps = 9/223 (4%)
Query: 280 NISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHM 339
N ++ D + S N N + D S+ +LT IP ++ L+ + ++L
Sbjct: 1 NEALCKKDGGVCSCNNNKNSV---DCSSKKLTA-IPSNIPADTKKLDLQSNKLSSLPSKA 56
Query: 340 FSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKH 399
F R LT LR L L N L+ + +LE L++ +N L L L
Sbjct: 57 FHR---LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAE 113
Query: 400 IIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLHGQL 458
+ + N L+ P F L L L + N + F L S++++ L N L ++
Sbjct: 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RV 172
Query: 459 KRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHN 501
G F + L TL L N+L D L +L L L N
Sbjct: 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 14/135 (10%)
Query: 33 LNTSFLQI----IRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRG 88
LN + LQ I + + +L+ L ++D+ L + DQ L++L EL +D N L+
Sbjct: 68 LNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQ----LVNLAELRLDRNQLKS 123
Query: 89 SLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQ-IPISLEPLFNH 147
P ++T L L + N+L S+ LTS++EL L NN + +P E F+
Sbjct: 124 LPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVP---EGAFDK 179
Query: 148 -SRLKIFDAANNEIK 161
+ LK NN++K
Sbjct: 180 LTELKTLKLDNNQLK 194
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 11/94 (11%)
Query: 593 LSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKL 651
L+ L L N+L +PP++ +LT++ L+L +N L L F L ++ L L N+L
Sbjct: 111 LAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169
Query: 652 NGKIPH----QLVELKTLAVFSVAYNNLSGEIPE 681
++P +L ELKTL + NN +PE
Sbjct: 170 K-RVPEGAFDKLTELKTLKL----DNNQLKRVPE 198
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 596 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI 655
LDL NKL LT+++ L L+ N L L F LK++E+L ++ NKL +
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA-L 100
Query: 656 P----HQLVELKTL 665
P QLV L L
Sbjct: 101 PIGVFDQLVNLAEL 114
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 90/192 (46%), Gaps = 17/192 (8%)
Query: 324 NLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSL 383
N+ +LAL N L H S LTNL L L GN L+ K ++L+ L L N L
Sbjct: 64 NVRYLALGGNKL--HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 384 SGKIPRWLGNLTGLKHIIMPENHLEGPIPVG-FCQLYSLQILDISDNNISGSLPS-CFHP 441
LT L ++ + N L+ +P G F +L +L LD+ DNN SLP F
Sbjct: 122 QSLPDGVFDKLTNLTYLYLYHNQLQS-LPKGVFDKLTNLTRLDL-DNNQLQSLPEGVFDK 179
Query: 442 LS-IEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGS------IPNWVDGLSQLS 494
L+ ++Q+ L+ N L + G F +SL + L N + + + W+ SQ
Sbjct: 180 LTQLKQLSLNDNQLKS-VPDGVFDRLTSLTHIWLLNNPWDCACSDILYLSRWI---SQHP 235
Query: 495 HLILGHNNLEGE 506
L+ G+ NL+ +
Sbjct: 236 GLVFGYLNLDPD 247
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 251 LRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQL 310
L+ L + N Q +P + D L +L + N L S F + L LDL NNQL
Sbjct: 111 LKELVLVENQLQS-LPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQL 169
Query: 311 TGEIPEHLAVSCVNLEFLALSNNNLKG---HMFSRNFNLTNL 349
+PE + L+ L+L++N LK +F R +LT++
Sbjct: 170 QS-LPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHI 210
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 109/436 (25%), Positives = 175/436 (40%), Gaps = 68/436 (15%)
Query: 96 NMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPIS--LEPLFNHSRLKIF 153
N+ +L LD+S NQ+ L S++ + S+N + LEPL L F
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL-QGKTLSFF 179
Query: 154 DAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMD 213
A N + + ++ F+ L + G+G T V++
Sbjct: 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT------------------VDIT 221
Query: 214 GEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDIL 273
G F N + + ++ L L + + F H+ + D N F G + +
Sbjct: 222 GNFSNAI--SKSQAFSLILAHHIMGAGF--GFHNIK-----DPDQNTFAGLARSSVRHLD 272
Query: 274 PSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNN 333
S F S+N+ F + L++L+L+ N++ +I + NL+ L LS
Sbjct: 273 LSH-GFVFSLNS------RVFETLKDLKVLNLAYNKI-NKIADEAFYGLDNLQVLNLS-Y 323
Query: 334 NLKGHMFSRNF-NLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSG-----KI 387
NL G ++S NF L + + L+ NH+ Q+ L+ L L +N+L+ I
Sbjct: 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSI 383
Query: 388 PRWLGNLTGLKHIIMP------------ENHLEG-PIPVGFCQLYSLQILDISDNNI--- 431
P L+G K + +P EN LE I ++ LQIL ++ N
Sbjct: 384 PDIF--LSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC 441
Query: 432 SGSLPSCFHPLSIEQVHLSKNMLH----GQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWV 487
SG +P S+EQ+ L +NML +L F S L L L++N LN P
Sbjct: 442 SGDQTPSENP-SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVF 500
Query: 488 DGLSQLSHLILGHNNL 503
L+ L L L N L
Sbjct: 501 SHLTALRGLSLNSNRL 516
Score = 36.2 bits (82), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 615 TRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNN 674
+ ++ L+LSH + L F LK ++ L+L+YNK+N L L V +++Y N
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY-N 324
Query: 675 LSGEI 679
L GE+
Sbjct: 325 LLGEL 329
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 613 NLTRIQTLNLSHNNLTGL-IPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL--KTLAVFS 669
NL + L+LS N + L + +F L ++S+D S N++ H+L L KTL+ FS
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180
Query: 670 VAYNNLSGEIP-EW 682
+A N+L + +W
Sbjct: 181 LAANSLYSRVSVDW 194
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 26/113 (23%)
Query: 346 LTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPEN 405
L++L+ L L N+L P S ++L GL LN+N LT L H +P N
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN-----------RLTVLSHNDLPAN 527
Query: 406 HLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQL 458
L+ILDIS N + P F LS+ + +K + +L
Sbjct: 528 ---------------LEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECEL 565
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 73 LMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT 111
L HLQ LY+++N L P +++T+LR L ++SN+LT
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 67/165 (40%), Gaps = 32/165 (19%)
Query: 614 LTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKL----NGKIPHQLVELK------ 663
L+ +Q L L+HN L L P FS+L + L L+ N+L + +P L L
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQL 538
Query: 664 ---------TLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPI-CRSPAT 713
+L+V + +N E + +TF N + G P I C P +
Sbjct: 539 LAPNPDVFVSLSVLDITHNKFICE-----CELSTFINWLNHTNVTIAGPPADIYCVYPDS 593
Query: 714 MSEASI------GNERDDNLIDID-SFFITFTTSYVVVIFGIVIV 751
S S+ G + ++ L + S FI T + + + I+ V
Sbjct: 594 FSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTV 638
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 98/376 (26%), Positives = 152/376 (40%), Gaps = 61/376 (16%)
Query: 273 LPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSN 332
L +L N S N L P N+ L + ++NNQ+ P + NL L L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFN 116
Query: 333 NNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG 392
N + +N LTNL L+L N + +LS +SL+ L ++N ++ P L
Sbjct: 117 NQITDIDPLKN--LTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP--LA 170
Query: 393 NLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKN 452
NLT L+ + + N + I V +L +L+ L ++N IS PL I +L +
Sbjct: 171 NLTTLERLDISSNKVSD-ISV-LAKLTNLESLIATNNQISD-----ITPLGI-LTNLDEL 222
Query: 453 MLHG-QLKR-GTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVX 510
L+G QLK GT ++L LDL+ N+++ P + GL++L+ L LG N + P+
Sbjct: 223 SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA 280
Query: 511 XXXXXXXXXXXXXXXXXHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQI 570
PI + T L NN + P + + +
Sbjct: 281 GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL-------- 332
Query: 571 HENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGL 630
+ Y KV + S + NLT I L+ HN ++ L
Sbjct: 333 ------------FFYNNKVSDVSS----------------LANLTNINWLSAGHNQISDL 364
Query: 631 IPSTFSNLKHIESLDL 646
P +NL I L L
Sbjct: 365 TP--LANLTRITQLGL 378
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 13/122 (10%)
Query: 69 GLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 128
L L LQ+L +N + P LAN+T+L LD+SSN+++ S L LT++E L
Sbjct: 146 ALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVS---DISVLAKLTNLESL 200
Query: 129 MLSNNHFQIPISLEPLFNHSRLKIFDAANNEIK-----AEITESHSLTAPNFQLQALSLS 183
+ +NN + PL + L N++K A +T L N Q+ L+
Sbjct: 201 IATNNQIS---DITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPL 257
Query: 184 SG 185
SG
Sbjct: 258 SG 259
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 93/348 (26%), Positives = 156/348 (44%), Gaps = 39/348 (11%)
Query: 69 GLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 128
G+ L +L ++ NN L P L N+T L + +++NQ+ +PL +LT++ L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA---DITPLANLTNLTGL 112
Query: 129 MLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGD 188
L NN ++PL N + L + ++N I ++I+ LT+ LQ LS SS +
Sbjct: 113 TLFNNQI---TDIDPLKNLTNLNRLELSSNTI-SDISALSGLTS----LQQLSFSS---N 161
Query: 189 GVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSH 248
VT K L + LE + +S N + +L T L L N+ ++ L I ++
Sbjct: 162 QVTDLKPLANLTTLERLDISS-NKVSDIS--VLAKLTNLESLIATNNQISDITPLGILTN 218
Query: 249 RWLRFLDVSNNNFQGHIPVEIGDI--LPSLISFNISMNALDSSIPSSFGNMNFLQILDLS 306
L L ++ N + +IG + L +L +++ N + + P + L L L
Sbjct: 219 --LDELSLNGNQLK-----DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 269
Query: 307 NNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQS 366
NQ++ P + NLE L+ N L+ S NL NL L L N++ P
Sbjct: 270 ANQISNISPLAGLTALTNLE---LNENQLED--ISPISNLKNLTYLTLYFNNISDISP-- 322
Query: 367 LSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG 414
+S + L+ L+ NN +S L NLT + + N + P+
Sbjct: 323 VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPLA 368
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 9/93 (9%)
Query: 588 KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLS 647
K L+ L+ L+LS N I I G LT +Q L+ S N +T L P +NL +E LD+S
Sbjct: 126 KNLTNLNRLELSSNT-ISDISALSG-LTSLQQLSFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 648 YNKLNG-KIPHQLVELKTLAVFSVAYNNLSGEI 679
NK++ + +L L++L +A NN +I
Sbjct: 182 SNKVSDISVLAKLTNLESL----IATNNQISDI 210
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 98/376 (26%), Positives = 152/376 (40%), Gaps = 61/376 (16%)
Query: 273 LPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSN 332
L +L N S N L P N+ L + ++NNQ+ P + NL L L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFN 116
Query: 333 NNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG 392
N + +N LTNL L+L N + +LS +SL+ L ++N ++ P L
Sbjct: 117 NQITDIDPLKN--LTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLKP--LA 170
Query: 393 NLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKN 452
NLT L+ + + N + I V +L +L+ L ++N IS PL I +L +
Sbjct: 171 NLTTLERLDISSNKVSD-ISV-LAKLTNLESLIATNNQISD-----ITPLGI-LTNLDEL 222
Query: 453 MLHG-QLKR-GTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVX 510
L+G QLK GT ++L LDL+ N+++ P + GL++L+ L LG N + P+
Sbjct: 223 SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA 280
Query: 511 XXXXXXXXXXXXXXXXXHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQI 570
PI + T L NN + P + + +
Sbjct: 281 GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL-------- 332
Query: 571 HENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGL 630
+ Y KV + S + NLT I L+ HN ++ L
Sbjct: 333 ------------FFYNNKVSDVSS----------------LANLTNINWLSAGHNQISDL 364
Query: 631 IPSTFSNLKHIESLDL 646
P +NL I L L
Sbjct: 365 TP--LANLTRITQLGL 378
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 69 GLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 128
L L LQ+L +N + P LAN+T+L LD+SSN+++ S L LT++E L
Sbjct: 146 ALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVS---DISVLAKLTNLESL 200
Query: 129 MLSNNHF 135
+ +NN
Sbjct: 201 IATNNQI 207
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 9/93 (9%)
Query: 588 KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLS 647
K L+ L+ L+LS N I I G LT +Q LN S N +T L P +NL +E LD+S
Sbjct: 126 KNLTNLNRLELSSNT-ISDISALSG-LTSLQQLNFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 648 YNKLNG-KIPHQLVELKTLAVFSVAYNNLSGEI 679
NK++ + +L L++L +A NN +I
Sbjct: 182 SNKVSDISVLAKLTNLESL----IATNNQISDI 210
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 155/348 (44%), Gaps = 39/348 (11%)
Query: 69 GLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 128
G+ L +L ++ NN L P L N+T L + +++NQ+ +PL +LT++ L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA---DITPLANLTNLTGL 112
Query: 129 MLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGD 188
L NN ++PL N + L + ++N I ++I+ LT+ LQ L+ SS
Sbjct: 113 TLFNNQI---TDIDPLKNLTNLNRLELSSNTI-SDISALSGLTS----LQQLNFSSNQ-- 162
Query: 189 GVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSH 248
VT K L + LE + +S N + +L T L L N+ ++ L I ++
Sbjct: 163 -VTDLKPLANLTTLERLDISS-NKVSDIS--VLAKLTNLESLIATNNQISDITPLGILTN 218
Query: 249 RWLRFLDVSNNNFQGHIPVEIGDI--LPSLISFNISMNALDSSIPSSFGNMNFLQILDLS 306
L L ++ N + +IG + L +L +++ N + + P + L L L
Sbjct: 219 --LDELSLNGNQLK-----DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 269
Query: 307 NNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQS 366
NQ++ P + NLE L+ N L+ S NL NL L L N++ P
Sbjct: 270 ANQISNISPLAGLTALTNLE---LNENQLED--ISPISNLKNLTYLTLYFNNISDISP-- 322
Query: 367 LSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG 414
+S + L+ L+ NN +S L NLT + + N + P+
Sbjct: 323 VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPLA 368
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 127/298 (42%), Gaps = 74/298 (24%)
Query: 251 LRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQL 310
L+ L V NNN + + D+ P L +S N L+ +P N +FL+I+D+ NN L
Sbjct: 113 LKSLLVDNNNLKA-----LSDLPPLLEYLGVSNNQLEK-LPE-LQNSSFLKIIDVDNNSL 165
Query: 311 TGEIPEHLAVSCVNLEFLALSNNNLK-----------GHMFSRNFNLTNLRSLQLE---- 355
+ L +LEF+A NN L+ +++ N +L L L L
Sbjct: 166 -----KKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESI 220
Query: 356 --GNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPV 413
GN++ E+P+ L L +Y +NN L +P +L L + +N+L
Sbjct: 221 VAGNNILEELPE-LQNLPFLTTIYADNNLLKT-LPDLPPSLEALN---VRDNYL-----T 270
Query: 414 GFCQL-YSLQILDISDNNISG--SLPS---------------CFHPLSIEQVHLSKN--- 452
+L SL LD+S+N SG LP C P S+E++++S N
Sbjct: 271 DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI 330
Query: 453 ---MLHGQLKR--GTFFHCSS-------LVTLDLSYNRLN--GSIPNWVDGLSQLSHL 496
L +L+R +F H + L L + YN L IP V+ L SHL
Sbjct: 331 ELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHL 388
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 94/329 (28%), Positives = 130/329 (39%), Gaps = 69/329 (20%)
Query: 99 SLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANN 158
SL+ L V +N L PL +E L +SNN + L L N S LKI D NN
Sbjct: 112 SLKSLLVDNNNLKALSDLPPL-----LEYLGVSNNQLE---KLPELQNSSFLKIIDVDNN 163
Query: 159 EIKAEITESHSL---TAPNFQLQALS-------LSSGYGDGVTFPKFLYHQHDLEDVRLS 208
+K SL A N QL+ L L++ Y D + K LE + ++
Sbjct: 164 SLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESI-VA 222
Query: 209 HVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSH----------------RWLR 252
N+ E P L+N L +Y N+ L LP + L
Sbjct: 223 GNNILEELPE--LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLT 280
Query: 253 FLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDS--SIPSSFGNMNFLQILDLSNNQL 310
FLDVS N F G + ++ P+L N S N + S +P S L+ L++SNN+L
Sbjct: 281 FLDVSENIFSG-----LSELPPNLYYLNASSNEIRSLCDLPPS------LEELNVSNNKL 329
Query: 311 TGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLE--GEIPQSLS 368
L LE L S N H+ NL+ L +E N L +IP+S+
Sbjct: 330 I-----ELPALPPRLERLIASFN----HLAEVPELPQNLKQLHVEYNPLREFPDIPESVE 380
Query: 369 KCSSLEGLYLNNNSLSGKIPRWLGNLTGL 397
L NS ++P NL L
Sbjct: 381 D--------LRMNSHLAEVPELPQNLKQL 401
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 69/147 (46%), Gaps = 13/147 (8%)
Query: 368 SKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLE--GPIPVGFCQLYSLQILD 425
SK S L +NN L+ + G+LT L+ +I+ N L+ I Q+ SLQ LD
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380
Query: 426 ISDNNIS--GSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHC--SSLVTLDLSYNRLNG 481
IS N++S C S+ +++S N+L T F C + LDL N++
Sbjct: 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL-----TDTIFRCLPPRIKVLDLHSNKIK- 434
Query: 482 SIPNWVDGLSQLSHLILGHNNLEGEVP 508
SIP V L L L + N L+ VP
Sbjct: 435 SIPKQVVKLEALQELNVASNQLKS-VP 460
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%)
Query: 611 IGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSV 670
I +L++++ L +SHN + L S F + +E LDLS+NKL H V LK L +
Sbjct: 41 ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFN 100
Query: 671 AYNNL 675
A++ L
Sbjct: 101 AFDAL 105
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 22/124 (17%)
Query: 572 ENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGL- 630
+NF + + ++ +S LD S N L + G+LT ++TL L N L L
Sbjct: 305 KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS 364
Query: 631 -IPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATF 689
I + +K ++ LD+S N SV+Y+ G+ WT +
Sbjct: 365 KIAEMTTQMKSLQQLDISQN-------------------SVSYDEKKGDC-SWTKSLLSL 404
Query: 690 NESS 693
N SS
Sbjct: 405 NMSS 408
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 596 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI 655
LDL NK I IP Q+ L +Q LN++ N L + F L ++ + L N +
Sbjct: 426 LDLHSNK-IKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 484
Query: 656 PH 657
P
Sbjct: 485 PR 486
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 103/379 (27%), Positives = 158/379 (41%), Gaps = 67/379 (17%)
Query: 273 LPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSN 332
L +L N S N L P N+ L + ++NNQ+ P + NL L L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFN 116
Query: 333 NNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG 392
N + +N LTNL L+L N + +LS +SL+ L ++N ++ P L
Sbjct: 117 NQITDIDPLKN--LTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP--LA 170
Query: 393 NLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKN 452
NLT L+ + + N + I V +L +L+ L ++N IS PL I +L +
Sbjct: 171 NLTTLERLDISSNKVSD-ISV-LAKLTNLESLIATNNQISD-----ITPLGI-LTNLDEL 222
Query: 453 MLHG-QLKR-GTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVX 510
L+G QLK GT ++L LDL+ N+++ P + GL++L+ L LG N + P+
Sbjct: 223 SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA 280
Query: 511 XXXXXXXXXXXXXXXXXHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQI 570
N L+E N + P
Sbjct: 281 GLT--------------------ALTNLELNE--NQLEDISPISN--------------- 303
Query: 571 HENFEFTT---KNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNL 627
+N + T NI+ I L+ L L S NK + + + NLT I L+ HN +
Sbjct: 304 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNK-VSDVS-SLANLTNINWLSAGHNQI 361
Query: 628 TGLIPSTFSNLKHIESLDL 646
+ L P +NL I L L
Sbjct: 362 SDLTP--LANLTRITQLGL 378
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 69 GLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 128
L L LQ+L +N + P LAN+T+L LD+SSN+++ S L LT++E L
Sbjct: 146 ALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVS---DISVLAKLTNLESL 200
Query: 129 MLSNNHF 135
+ +NN
Sbjct: 201 IATNNQI 207
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 93/348 (26%), Positives = 156/348 (44%), Gaps = 39/348 (11%)
Query: 69 GLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 128
G+ L +L ++ NN L P L N+T L + +++NQ+ +PL +LT++ L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA---DITPLANLTNLTGL 112
Query: 129 MLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGD 188
L NN ++PL N + L + ++N I ++I+ LT+ LQ LS SS
Sbjct: 113 TLFNNQI---TDIDPLKNLTNLNRLELSSNTI-SDISALSGLTS----LQQLSFSSNQ-- 162
Query: 189 GVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSH 248
VT K L + LE + +S N + +L T L L N+ ++ L I ++
Sbjct: 163 -VTDLKPLANLTTLERLDISS-NKVSDIS--VLAKLTNLESLIATNNQISDITPLGILTN 218
Query: 249 RWLRFLDVSNNNFQGHIPVEIGDI--LPSLISFNISMNALDSSIPSSFGNMNFLQILDLS 306
L L ++ N + +IG + L +L +++ N + + P + L L L
Sbjct: 219 --LDELSLNGNQLK-----DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 269
Query: 307 NNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQS 366
NQ++ P + NLE L+ N L+ S NL NL L L N++ P
Sbjct: 270 ANQISNISPLAGLTALTNLE---LNENQLED--ISPISNLKNLTYLTLYFNNISDISP-- 322
Query: 367 LSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG 414
+S + L+ L+ +NN +S L NLT + + N + P+
Sbjct: 323 VSSLTKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLTPLA 368
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 9/93 (9%)
Query: 588 KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLS 647
K L+ L+ L+LS N I I G LT +Q L+ S N +T L P +NL +E LD+S
Sbjct: 126 KNLTNLNRLELSSNT-ISDISALSG-LTSLQQLSFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 648 YNKLNG-KIPHQLVELKTLAVFSVAYNNLSGEI 679
NK++ + +L L++L +A NN +I
Sbjct: 182 SNKVSDISVLAKLTNLESL----IATNNQISDI 210
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 101/219 (46%), Gaps = 10/219 (4%)
Query: 288 SSIPSSFG-NMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNL 346
+ +P+S N +L + + S + + +HL +LE L LS N ++ L
Sbjct: 27 AEVPASIPVNTRYLNLQENSIQVIRTDTFKHLR----HLEILQLSKNLVRKIEVGAFNGL 82
Query: 347 TNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGN-LTGLKHIIMPE- 404
+L +L+L N L Q+ S L L+L NN + IP + N + L+ + + E
Sbjct: 83 PSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLRRLDLGEL 141
Query: 405 NHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFF 464
LE F L +L+ L++ N+ +P+ + +E++ LS N L ++ G+F
Sbjct: 142 KRLEYISEAAFEGLVNLRYLNLGMCNLK-DIPNLTALVRLEELELSGNRL-DLIRPGSFQ 199
Query: 465 HCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNL 503
+SL L L + ++ N D L L L L HNNL
Sbjct: 200 GLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 80/193 (41%), Gaps = 29/193 (15%)
Query: 265 IPVEIGDILPSLISFNISMNALDSSIPS-SFGNMNFLQILDLSNNQLTGEIPEHLAVSCV 323
+P + + L L + N ++S IPS +F + L+ LDL + I E V
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLV 156
Query: 324 NLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSL 383
NL +L L NLK L L L+L GN L+ P S +SL L+L + +
Sbjct: 157 NLRYLNLGMCNLKD--IPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV 214
Query: 384 SGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPL- 442
+ I R F L SL+ L++S NN+ F PL
Sbjct: 215 A-TIER-----------------------NAFDDLKSLEELNLSHNNLMSLPHDLFTPLH 250
Query: 443 SIEQVHLSKNMLH 455
+E+VHL+ N H
Sbjct: 251 RLERVHLNHNPWH 263
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 98/249 (39%), Gaps = 52/249 (20%)
Query: 422 QILDISDNNISGSLPSCF-HPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLN 480
+ L++ +N+I F H +E + LSKN++ +++ G F SL TL+L NRL
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVR-KIEVGAFNGLPSLNTLELFDNRLT 96
Query: 481 GSIPNWVDGLSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXXHGPIPPCFDNTTL 540
+ LS+L L L +N +E IP
Sbjct: 97 TVPTQAFEYLSKLRELWLRNNPIES-------------------------IP-------- 123
Query: 541 HESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQG----------KVL 590
SY+ + +D + + I E N+ Y+ G L
Sbjct: 124 ------SYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTAL 177
Query: 591 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNK 650
L L+LS N+L P LT ++ L L H + + + F +LK +E L+LS+N
Sbjct: 178 VRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNN 237
Query: 651 LNGKIPHQL 659
L +PH L
Sbjct: 238 LMS-LPHDL 245
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 92/234 (39%), Gaps = 41/234 (17%)
Query: 18 FKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQ 77
FK L HL+++ L +PSL L + D+ L T + Q L L+
Sbjct: 55 FKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT----VPTQAFEYLSKLR 110
Query: 78 ELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSP------------------- 118
EL++ NN + + + SLR LD+ + IS +
Sbjct: 111 ELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKD 170
Query: 119 ---LVHLTSIEELMLSNNHFQI--PISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAP 173
L L +EEL LS N + P S + L + +L + A I+ +
Sbjct: 171 IPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLK---- 226
Query: 174 NFQLQALSLSSGYGDGVTFPKFLYHQ-HDLEDVRLS----HVNMDGEFPNWLLE 222
L+ L+LS + + ++ P L+ H LE V L+ H N D + +W L+
Sbjct: 227 --SLEELNLS--HNNLMSLPHDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLK 276
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 609 PQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVF 668
P + L R++ L LS N L + P +F L + L L + ++ + +LK+L
Sbjct: 172 PNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEEL 231
Query: 669 SVAYNNL 675
++++NNL
Sbjct: 232 NLSHNNL 238
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 101/219 (46%), Gaps = 10/219 (4%)
Query: 288 SSIPSSFG-NMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNL 346
+ +P+S N +L + + S + + +HL +LE L LS N ++ L
Sbjct: 27 AEVPASIPVNTRYLNLQENSIQVIRTDTFKHLR----HLEILQLSKNLVRKIEVGAFNGL 82
Query: 347 TNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGN-LTGLKHIIMPE- 404
+L +L+L N L Q+ S L L+L NN + IP + N + L+ + + E
Sbjct: 83 PSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLRRLDLGEL 141
Query: 405 NHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFF 464
LE F L +L+ L++ N+ +P+ + +E++ LS N L ++ G+F
Sbjct: 142 KRLEYISEAAFEGLVNLRYLNLGMCNLK-DIPNLTALVRLEELELSGNRL-DLIRPGSFQ 199
Query: 465 HCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNL 503
+SL L L + ++ N D L L L L HNNL
Sbjct: 200 GLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 83/194 (42%), Gaps = 31/194 (15%)
Query: 265 IPVEIGDILPSLISFNISMNALDSSIPS-SFGNMNFLQILDLSNNQLTGEIPEHLAVSCV 323
+P + + L L + N ++S IPS +F + L+ LDL + I E V
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLV 156
Query: 324 NLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSL 383
NL +L L NLK L L L+L GN L+ P S +SL L+L + +
Sbjct: 157 NLRYLNLGMCNLKD--IPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV 214
Query: 384 SGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLP-SCFHPL 442
+ I R F L SL+ L++S NN+ SLP F PL
Sbjct: 215 A-TIER-----------------------NAFDDLKSLEELNLSHNNLM-SLPHDLFTPL 249
Query: 443 -SIEQVHLSKNMLH 455
+E+VHL+ N H
Sbjct: 250 HRLERVHLNHNPWH 263
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 98/249 (39%), Gaps = 52/249 (20%)
Query: 422 QILDISDNNISGSLPSCF-HPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLN 480
+ L++ +N+I F H +E + LSKN++ +++ G F SL TL+L NRL
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVR-KIEVGAFNGLPSLNTLELFDNRLT 96
Query: 481 GSIPNWVDGLSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXXHGPIPPCFDNTTL 540
+ LS+L L L +N +E IP
Sbjct: 97 TVPTQAFEYLSKLRELWLRNNPIES-------------------------IP-------- 123
Query: 541 HESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQG----------KVL 590
SY+ + +D + + I E N+ Y+ G L
Sbjct: 124 ------SYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTAL 177
Query: 591 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNK 650
L L+LS N+L P LT ++ L L H + + + F +LK +E L+LS+N
Sbjct: 178 VRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNN 237
Query: 651 LNGKIPHQL 659
L +PH L
Sbjct: 238 LMS-LPHDL 245
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 92/234 (39%), Gaps = 41/234 (17%)
Query: 18 FKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQ 77
FK L HL+++ L +PSL L + D+ L T + Q L L+
Sbjct: 55 FKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT----VPTQAFEYLSKLR 110
Query: 78 ELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSP------------------- 118
EL++ NN + + + SLR LD+ + IS +
Sbjct: 111 ELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKD 170
Query: 119 ---LVHLTSIEELMLSNNHFQI--PISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAP 173
L L +EEL LS N + P S + L + +L + A I+ +
Sbjct: 171 IPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLK---- 226
Query: 174 NFQLQALSLSSGYGDGVTFPKFLYHQ-HDLEDVRLS----HVNMDGEFPNWLLE 222
L+ L+LS + + ++ P L+ H LE V L+ H N D + +W L+
Sbjct: 227 --SLEELNLS--HNNLMSLPHDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLK 276
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 609 PQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVF 668
P + L R++ L LS N L + P +F L + L L + ++ + +LK+L
Sbjct: 172 PNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEEL 231
Query: 669 SVAYNNL 675
++++NNL
Sbjct: 232 NLSHNNL 238
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 116/267 (43%), Gaps = 30/267 (11%)
Query: 21 LDHLDMVFAR-TALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLC-SLMHLQE 78
L+ L + + R TA + L + + +LK L++S++ +G +R+L QGL S L+
Sbjct: 140 LEKLQLEYCRLTAASCEPLASVLRATRALKELTVSNNDIGEAGARVLGQGLADSACQLET 199
Query: 79 LYIDNNDLRGS----LPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH 134
L ++N L + L +A+ SLR LD+ SN L + + L S + +
Sbjct: 200 LRLENCGLTPANCKDLCGIVASQASLRELDLGSNGLGDAGIAELCPGLLSPASRLKTLWL 259
Query: 135 FQIPISLEPLFNHSR-------LKIFDAANNEIKAEITE--SHSLTAPNFQLQAL----- 180
++ I+ + R LK A N++ E SL P QL++L
Sbjct: 260 WECDITASGCRDLCRVLQAKETLKELSLAGNKLGDEGARLLCESLLQPGCQLESLWVKSC 319
Query: 181 SLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDG----EFPNWLLENNTKLRQLYL---- 232
SL++ V+ L L +++LS + E L + T LR L L
Sbjct: 320 SLTAACCQHVSL--MLTQNKHLLELQLSSNKLGDSGIQELCQALSQPGTTLRVLCLGDCE 377
Query: 233 VNDSLTGPFRLPIHSHRWLRFLDVSNN 259
V +S + ++R LR LD+SNN
Sbjct: 378 VTNSGCSSLASLLLANRSLRELDLSNN 404
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 128/303 (42%), Gaps = 43/303 (14%)
Query: 44 SMPSLKYLSMSDSTLGTNSSRILDQGLCS-LMHLQELYIDNNDLRGS----LPWCLANMT 98
S+P+L+ L +SD+ LG R+L +GL HL++L ++ L + L L
Sbjct: 107 SLPTLRELHLSDNPLGDAGLRLLCEGLLDPQCHLEKLQLEYCRLTAASCEPLASVLRATR 166
Query: 99 SLRILDVSSNQLTGSISSSPLVH-----LTSIEELMLSNNHFQIPISLEPLF----NHSR 149
+L+ L VS+N + G + L +E L L N P + + L + +
Sbjct: 167 ALKELTVSNNDI-GEAGARVLGQGLADSACQLETLRLENCGL-TPANCKDLCGIVASQAS 224
Query: 150 LKIFDAANNEI-KAEITE-SHSLTAPNFQLQALSL------SSGYGDGVTFPKFLYHQHD 201
L+ D +N + A I E L +P +L+ L L +SG D + L +
Sbjct: 225 LRELDLGSNGLGDAGIAELCPGLLSPASRLKTLWLWECDITASGCRD---LCRVLQAKET 281
Query: 202 LEDVRLSHVNMDGEFPNWLLEN----NTKLRQLYLVNDSLTGP----FRLPIHSHRWLRF 253
L+++ L+ + E L E+ +L L++ + SLT L + ++ L
Sbjct: 282 LKELSLAGNKLGDEGARLLCESLLQPGCQLESLWVKSCSLTAACCQHVSLMLTQNKHLLE 341
Query: 254 LDVSNNNFQGHIPVEI-------GDILPSLISFNISM-NALDSSIPSSFGNMNFLQILDL 305
L +S+N E+ G L L + + N+ SS+ S L+ LDL
Sbjct: 342 LQLSSNKLGDSGIQELCQALSQPGTTLRVLCLGDCEVTNSGCSSLASLLLANRSLRELDL 401
Query: 306 SNN 308
SNN
Sbjct: 402 SNN 404
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Query: 593 LSGLDLSCNKLIGH--IPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNK 650
L LDLS N + Q+ NL+ +QTLNLSHN GL F +E LDL++ +
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR 408
Query: 651 LNGKIPHQLVE-LKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCG 702
L+ P + L L V ++ Y L A + +GN F G
Sbjct: 409 LHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDG 461
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 85/206 (41%), Gaps = 38/206 (18%)
Query: 334 NLKGHMFS----RNFN-LTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIP 388
NL+ H FS F T L+ L L HL+G +P + + L+ L L+ N
Sbjct: 257 NLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQ 315
Query: 389 RWLGNLTGLKHIIMPENHLEGPIPVGFCQ-LYSLQILDISDNNISGSLPSCFHPLS---- 443
N L H+ + N + + VG + L +LQ LD+S N+I S C L
Sbjct: 316 ISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEAS-DCCSLQLKNLSH 374
Query: 444 IEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIP------------------- 484
++ ++LS N G L+ F C L LDL++ RL+ + P
Sbjct: 375 LQTLNLSHNEPLG-LQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCF 433
Query: 485 ------NWVDGLSQLSHLILGHNNLE 504
+ + GL L HL L N+ +
Sbjct: 434 LDTSNQHLLAGLPVLRHLNLKGNHFQ 459
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 89/192 (46%), Gaps = 18/192 (9%)
Query: 324 NLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGN---HLEGEIPQSLSKCSSLEGLYLNN 380
NLE L L +N++ F ++F NL+ L + N ++ E +SL + +L L N
Sbjct: 127 NLESLYLGSNHISSIKFPKDFPARNLKVLDFQNNAIHYISREDMRSLEQAINL-SLNFNG 185
Query: 381 NSLSG--------KIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNIS 432
N++ G I + L N G ++ + N L+ L+ DI D +IS
Sbjct: 186 NNVKGIELGAFDSTIFQSL-NFGGTPNLSVIFNGLQNSTTQS---LWLGTFEDIDDEDIS 241
Query: 433 GSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQ 492
++ +S+E ++L ++ + TF + L LDL+ L G +P+ + GL+
Sbjct: 242 SAMLKGLCEMSVESLNLQEHRF-SDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNL 299
Query: 493 LSHLILGHNNLE 504
L L+L N+ +
Sbjct: 300 LKKLVLSVNHFD 311
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 120/308 (38%), Gaps = 67/308 (21%)
Query: 252 RFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQ-- 309
RF D+S+ FQ ++ D+ + + +PS +N L+ L LS N
Sbjct: 262 RFSDISSTTFQCFTQLQELDLTATHLK----------GLPSGMKGLNLLKKLVLSVNHFD 311
Query: 310 -----------------LTGEIPE-HLAVSCV----NLEFLALSNNNLKGHMFS--RNFN 345
+ G + + HL V C+ NL+ L LS+N+++ + N
Sbjct: 312 QLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKN 371
Query: 346 LTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPR---------------- 389
L++L++L L N G Q+ +C LE L L L P+
Sbjct: 372 LSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTY 431
Query: 390 ---------WLGNLTGLKHIIMPENHLE-GPIPVG--FCQLYSLQILDISDNNISGSLPS 437
L L L+H+ + NH + G I + SL++L +S +
Sbjct: 432 CFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQ 491
Query: 438 CFHPL-SIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHL 496
FH L + V LS N L + H + L+L+ N +N P + LSQ S +
Sbjct: 492 AFHSLGKMSHVDLSHNSLTCD-SIDSLSHLKG-IYLNLAANSINIISPRLLPILSQQSTI 549
Query: 497 ILGHNNLE 504
L HN L+
Sbjct: 550 NLSHNPLD 557
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 607 IPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLA 666
+P ++ N + ++LS+N ++ L +FSN+ + +L LSYN+L P LK+L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 667 VFSVAYNNLSGEIPE 681
+ S+ N++S +PE
Sbjct: 106 LLSLHGNDIS-VVPE 119
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 348 NLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHL 407
++ L L+GN +P+ LS L + L+NN +S + N+T L +I+ N L
Sbjct: 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 408 EGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLS 443
P F L SL++L + N+IS F+ LS
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS 126
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%)
Query: 593 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 652
L+ +DLS N++ N+T++ TL LS+N L + P TF LK + L L N ++
Sbjct: 56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Query: 653 GKIPHQLVELKTLAVFSVAYNNL 675
+L L+ ++ N L
Sbjct: 116 VVPEGAFNDLSALSHLAIGANPL 138
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 29/140 (20%)
Query: 272 ILPSLISFNISMNALDSS----IPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEF 327
+LP I +++ LD + +P N L ++DLSNN+++
Sbjct: 24 VLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS---------------- 67
Query: 328 LALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKI 387
LSN + N+T L +L L N L P++ SL L L+ N +S
Sbjct: 68 -TLSNQSFS--------NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP 118
Query: 388 PRWLGNLTGLKHIIMPENHL 407
+L+ L H+ + N L
Sbjct: 119 EGAFNDLSALSHLAIGANPL 138
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 447 VHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNL 503
+ LS N + L +F + + L+TL LSYNRL P DGL L L L N++
Sbjct: 59 IDLSNNRI-STLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI 114
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 254 LDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGE 313
LD+S+N Q +P+ +G LP+L ++S N L S + + LQ L L N+L
Sbjct: 82 LDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-T 138
Query: 314 IPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHL 359
+P L LE L+L+NNNL L NL +L L+ N L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Query: 295 GNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQL 354
G + L LDLS+NQL +P L + L L +S N L L L+ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 355 EGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG 414
+GN L+ P L+ LE L L NN+L+ L L L +++ EN L IP G
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKG 190
Query: 415 F 415
F
Sbjct: 191 F 191
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 6/102 (5%)
Query: 38 LQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANM 97
L ++ +++P+L L +S + L + + L L LQELY+ N+L+ P L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRL----TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 98 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH-FQIP 138
L L +++N LT + + L L +++ L+L N + IP
Sbjct: 148 PKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 288 SSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLT 347
+ +P+ N++ L++LDLS+N+LT +P L SC L++ +N + + NL
Sbjct: 260 TELPAEIKNLSNLRVLDLSHNRLTS-LPAELG-SCFQLKYFYFFDNMVTTLPWEFG-NLC 316
Query: 348 NLRSLQLEGNHLEGEIPQSLSKCSSLEGL--YLNNNSLSGKIP 388
NL+ L +EGN LE + + L++ S+ GL YL +N +P
Sbjct: 317 NLQFLGVEGNPLEKQFLKILTE-KSVTGLIFYLRDNRPEIPLP 358
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 76 LQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT 111
L LY++ N L LP + N+++LR+LD+S N+LT
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 592 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGL 630
L+ L L+ N L +P +I NL+ ++ L+LSHN LT L
Sbjct: 248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSL 285
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 65/138 (47%), Gaps = 11/138 (7%)
Query: 225 TKLRQLYLVNDSLTG---PFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNI 281
T+L QL L LT LP+ L LD+S+N Q +P+ +G LP+L ++
Sbjct: 55 TRLTQLNLDRAELTKLQVDGTLPV-----LGTLDLSHNQLQS-LPL-LGQTLPALTVLDV 107
Query: 282 SMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFS 341
S N L S + + LQ L L N+L +P L LE L+L+NNNL
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAG 166
Query: 342 RNFNLTNLRSLQLEGNHL 359
L NL +L L+ N L
Sbjct: 167 LLNGLENLDTLLLQENSL 184
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Query: 295 GNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQL 354
G + L LDLS+NQL +P L + L L +S N L L L+ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 355 EGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG 414
+GN L+ P L+ LE L L NN+L+ L L L +++ EN L IP G
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKG 190
Query: 415 F 415
F
Sbjct: 191 F 191
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 6/102 (5%)
Query: 38 LQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANM 97
L ++ +++P+L L +S + L + + L L LQELY+ N+L+ P L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRL----TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 98 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH-FQIP 138
L L +++N LT + + L L +++ L+L N + IP
Sbjct: 148 PKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 65/138 (47%), Gaps = 11/138 (7%)
Query: 225 TKLRQLYLVNDSLTG---PFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNI 281
T+L QL L LT LP+ L LD+S+N Q +P+ +G LP+L ++
Sbjct: 55 TRLTQLNLDRAELTKLQVDGTLPV-----LGTLDLSHNQLQS-LPL-LGQTLPALTVLDV 107
Query: 282 SMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFS 341
S N L S + + LQ L L N+L +P L LE L+L+NNNL
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAG 166
Query: 342 RNFNLTNLRSLQLEGNHL 359
L NL +L L+ N L
Sbjct: 167 LLNGLENLDTLLLQENSL 184
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Query: 295 GNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQL 354
G + L LDLS+NQL +P L + L L +S N L L L+ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 355 EGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG 414
+GN L+ P L+ LE L L NN+L+ L L L +++ EN L IP G
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKG 190
Query: 415 F 415
F
Sbjct: 191 F 191
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 6/102 (5%)
Query: 38 LQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANM 97
L ++ +++P+L L +S + L + + L L LQELY+ N+L+ P L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRL----TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 98 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH-FQIP 138
L L +++N LT + + L L +++ L+L N + IP
Sbjct: 148 PKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 65/138 (47%), Gaps = 11/138 (7%)
Query: 225 TKLRQLYLVNDSLTG---PFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNI 281
T+L QL L LT LP+ L LD+S+N Q +P+ +G LP+L ++
Sbjct: 55 TRLTQLNLDRAELTKLQVDGTLPV-----LGTLDLSHNQLQS-LPL-LGQTLPALTVLDV 107
Query: 282 SMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFS 341
S N L S + + LQ L L N+L +P L LE L+L+NNNL
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAG 166
Query: 342 RNFNLTNLRSLQLEGNHL 359
L NL +L L+ N L
Sbjct: 167 LLNGLENLDTLLLQENSL 184
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Query: 295 GNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQL 354
G + L LDLS+NQL +P L + L L +S N L L L+ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 355 EGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG 414
+GN L+ P L+ LE L L NN+L+ L L L +++ EN L IP G
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKG 190
Query: 415 F 415
F
Sbjct: 191 F 191
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 6/102 (5%)
Query: 38 LQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANM 97
L ++ +++P+L L +S + L + + L L LQELY+ N+L+ P L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRL----TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 98 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH-FQIP 138
L L +++N LT + + L L +++ L+L N + IP
Sbjct: 148 PKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
Query: 251 LRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQL 310
L LD+S+N Q +P+ +G LP+L ++S N L S + + LQ L L N+L
Sbjct: 80 LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 137
Query: 311 TGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHL 359
+P L LE L+L+NNNL L NL +L L+ N L
Sbjct: 138 K-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 185
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Query: 295 GNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQL 354
G + L LDLS+NQL +P L + L L +S N L L L+ L L
Sbjct: 75 GTLPVLGTLDLSHNQLQ-SLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 132
Query: 355 EGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG 414
+GN L+ P L+ LE L L NN+L+ L L L +++ EN L IP G
Sbjct: 133 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKG 191
Query: 415 F 415
F
Sbjct: 192 F 192
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 6/102 (5%)
Query: 38 LQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANM 97
L ++ +++P+L L +S + L + + L L LQELY+ N+L+ P L
Sbjct: 93 LPLLGQTLPALTVLDVSFNRL----TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 148
Query: 98 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH-FQIP 138
L L +++N LT + + L L +++ L+L N + IP
Sbjct: 149 PKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIP 189
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 55/121 (45%), Gaps = 3/121 (2%)
Query: 295 GNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQL 354
G + L LDLS+NQL +P L + L L +S N L L L+ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 355 EGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG 414
+GN L+ P L+ LE L L NN L+ L L L +++ EN L IP G
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYT-IPKG 190
Query: 415 F 415
F
Sbjct: 191 F 191
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
Query: 251 LRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQL 310
L LD+S+N Q +P+ +G LP+L ++S N L S + + LQ L L N+L
Sbjct: 79 LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 311 TGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHL 359
+P L LE L+L+NN+L L NL +L L+ N L
Sbjct: 137 K-TLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSL 184
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 6/102 (5%)
Query: 38 LQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANM 97
L ++ +++P+L L +S + L + + L L LQELY+ N+L+ P L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRL----TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 98 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH-FQIP 138
L L +++N LT + + L L +++ L+L N + IP
Sbjct: 148 PKLEKLSLANNDLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 89 SLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQ-IPISLEPLFNH 147
SLP + +L +LDVS N+LT S+ L L ++EL L N + +P L L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGL--LTPT 147
Query: 148 SRLKIFDAANNEI 160
+L+ ANN++
Sbjct: 148 PKLEKLSLANNDL 160
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%)
Query: 587 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDL 646
G+ L L+ LD+S N+L + L +Q L L N L L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 647 SYNKL 651
+ N L
Sbjct: 156 ANNDL 160
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 55/121 (45%), Gaps = 3/121 (2%)
Query: 295 GNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQL 354
G + L LDLS+NQL +P L + L L +S N L L L+ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 355 EGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG 414
+GN L+ P L+ LE L L NN L+ L L L +++ EN L IP G
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYT-IPKG 190
Query: 415 F 415
F
Sbjct: 191 F 191
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 3/106 (2%)
Query: 254 LDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGE 313
LD+S+N Q +P+ +G LP+L ++S N L S + + LQ L L N+L
Sbjct: 82 LDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-T 138
Query: 314 IPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHL 359
+P L LE L+L+NN L L NL +L L+ N L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 38 LQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANM 97
L ++ +++P+L L +S + L + + L L LQELY+ N+L+ P L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRL----TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 98 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH-FQIP 138
L L +++NQLT + + L L +++ L+L N + IP
Sbjct: 148 PKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 587 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDL 646
G+ L L+ LD+S N+L + L +Q L L N L L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 647 SYNKL 651
+ N+L
Sbjct: 156 ANNQL 160
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 72 SLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLS 131
+L L L + +N L+ SLP + +L +LDVS N+LT S+ L L ++EL L
Sbjct: 75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLK 132
Query: 132 NNHFQ-IPISLEPLFNHSRLKIFDAANNEI 160
N + +P L L +L+ ANN++
Sbjct: 133 GNELKTLPPGL--LTPTPKLEKLSLANNQL 160
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 55/121 (45%), Gaps = 3/121 (2%)
Query: 295 GNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQL 354
G + L LDLS+NQL +P L + L L +S N L L L+ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 355 EGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG 414
+GN L+ P L+ LE L L NN L+ L L L +++ EN L IP G
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYT-IPKG 190
Query: 415 F 415
F
Sbjct: 191 F 191
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 3/106 (2%)
Query: 254 LDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGE 313
LD+S+N Q +P+ +G LP+L ++S N L S + + LQ L L N+L
Sbjct: 82 LDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-T 138
Query: 314 IPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHL 359
+P L LE L+L+NN L L NL +L L+ N L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 38 LQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANM 97
L ++ +++P+L L +S + L + + L L LQELY+ N+L+ P L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRL----TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 98 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH-FQIP 138
L L +++NQLT + + L L +++ L+L N + IP
Sbjct: 148 PKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 587 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDL 646
G+ L L+ LD+S N+L + L +Q L L N L L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 647 SYNKL 651
+ N+L
Sbjct: 156 ANNQL 160
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 89 SLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQ-IPISLEPLFNH 147
SLP + +L +LDVS N+LT S+ L L ++EL L N + +P L L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGL--LTPT 147
Query: 148 SRLKIFDAANNEI 160
+L+ ANN++
Sbjct: 148 PKLEKLSLANNQL 160
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 55/121 (45%), Gaps = 3/121 (2%)
Query: 295 GNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQL 354
G + L LDLS+NQL +P L + L L +S N L L L+ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 355 EGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG 414
+GN L+ P L+ LE L L NN L+ L L L +++ EN L IP G
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYT-IPKG 190
Query: 415 F 415
F
Sbjct: 191 F 191
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 3/106 (2%)
Query: 254 LDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGE 313
LD+S+N Q +P+ +G LP+L ++S N L S + + LQ L L N+L
Sbjct: 82 LDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-T 138
Query: 314 IPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHL 359
+P L LE L+L+NN L L NL +L L+ N L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 38 LQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANM 97
L ++ +++P+L L +S + L + + L L LQELY+ N+L+ P L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRL----TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 98 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH-FQIP 138
L L +++NQLT + + L L +++ L+L N + IP
Sbjct: 148 PKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 587 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDL 646
G+ L L+ LD+S N+L + L +Q L L N L L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 647 SYNKL 651
+ N+L
Sbjct: 156 ANNQL 160
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 89 SLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQ-IPISLEPLFNH 147
SLP + +L +LDVS N+LT S+ L L ++EL L N + +P L L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGL--LTPT 147
Query: 148 SRLKIFDAANNEI 160
+L+ ANN++
Sbjct: 148 PKLEKLSLANNQL 160
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 55/121 (45%), Gaps = 3/121 (2%)
Query: 295 GNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQL 354
G + L LDLS+NQL +P L + L L +S N L L L+ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 355 EGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG 414
+GN L+ P L+ LE L L NN L+ L L L +++ EN L IP G
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYT-IPKG 190
Query: 415 F 415
F
Sbjct: 191 F 191
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 3/106 (2%)
Query: 254 LDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGE 313
LD+S+N Q +P+ +G LP+L ++S N L S + + LQ L L N+L
Sbjct: 82 LDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-T 138
Query: 314 IPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHL 359
+P L LE L+L+NN L L NL +L L+ N L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 38 LQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANM 97
L ++ +++P+L L +S + L + + L L LQELY+ N+L+ P L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRL----TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 98 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH-FQIP 138
L L +++NQLT + + L L +++ L+L N + IP
Sbjct: 148 PKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 587 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDL 646
G+ L L+ LD+S N+L + L +Q L L N L L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 647 SYNKL 651
+ N+L
Sbjct: 156 ANNQL 160
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 76 LQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHF 135
L L + +N L+ SLP + +L +LDVS N+LT S+ L L ++EL L N
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL 136
Query: 136 Q-IPISLEPLFNHSRLKIFDAANNEI 160
+ +P L L +L+ ANN++
Sbjct: 137 KTLPPGL--LTPTPKLEKLSLANNQL 160
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 32/233 (13%)
Query: 283 MNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSR 342
++ + IPS N +L +++ + + + HL +LE L L N+++
Sbjct: 66 LSEVPQGIPS---NTRYLNLMENNIQMIQADTFRHLH----HLEVLQLGRNSIRQIEVGA 118
Query: 343 NFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRW------------ 390
L +L +L+L N L + S L L+L NN + IP +
Sbjct: 119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLD 177
Query: 391 LGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLS 450
LG L L++I E EG L++L+ L++ NI +P+ + +E++ +S
Sbjct: 178 LGELKKLEYI--SEGAFEG--------LFNLKYLNLGMCNIK-DMPNLTPLVGLEELEMS 226
Query: 451 KNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNL 503
N +++ G+F SSL L + ++++ N DGL+ L L L HNNL
Sbjct: 227 GNHF-PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 78/195 (40%), Gaps = 27/195 (13%)
Query: 259 NNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHL 318
+N+ IP + L L + N ++S +F + L LDL + I E
Sbjct: 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA 191
Query: 319 AVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYL 378
NL++L L N+K L L L++ GNH P S SSL+ L++
Sbjct: 192 FEGLFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV 249
Query: 379 NNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSC 438
N+ +S ++ N +G L SL L+++ NN+S
Sbjct: 250 MNSQVS----------------LIERNAFDG--------LASLVELNLAHNNLSSLPHDL 285
Query: 439 FHPLS-IEQVHLSKN 452
F PL + ++HL N
Sbjct: 286 FTPLRYLVELHLHHN 300
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 121/492 (24%), Positives = 204/492 (41%), Gaps = 67/492 (13%)
Query: 44 SMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRIL 103
S P L+ L +S + T I D SL HL L + N ++ + ++SL+ L
Sbjct: 50 SFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105
Query: 104 DVSSNQLTGSISSSPLVHLTSIEELMLSNN---HFQIPISLEPLFNHSRLKIFDAANNEI 160
L S+ + P+ HL +++EL +++N F++P E N + L+ D ++N+I
Sbjct: 106 VAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLP---EYFSNLTNLEHLDLSSNKI 161
Query: 161 KA----EITESHSL--------------------TAPNFQLQALSLSSGYGDGVTFPKFL 196
++ ++ H + +L L+L + + +
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCI 221
Query: 197 YHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDV 256
LE RL + GEF N E N + +L G L I R L +LD
Sbjct: 222 QGLAGLEVHRL----VLGEFRN---EGNLE----KFDKSALEGLCNLTIEEFR-LAYLDY 269
Query: 257 SNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNF-LQILDLSNNQLTGEIP 315
++ +++ + L ++ SF++ ++ S+ NF Q L+L N + G+ P
Sbjct: 270 YLDDI-----IDLFNCLTNVSSFSLVSVTIERVKDFSY---NFGWQHLELVNCKF-GQFP 320
Query: 316 EHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHL--EGEIPQSLSKCSSL 373
S L F + N G+ FS +L +L L L N L +G QS +SL
Sbjct: 321 TLKLKSLKRLTFTS----NKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375
Query: 374 EGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG-FCQLYSLQILDISDNNIS 432
+ L L+ N + +LG L L+H+ ++L+ F L +L LDIS +
Sbjct: 376 KYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434
Query: 433 GSLPSCFHPLS-IEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLS 491
+ F+ LS +E + ++ N F +L LDLS +L P + LS
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494
Query: 492 QLSHLILGHNNL 503
L L + HNN
Sbjct: 495 SLQVLNMSHNNF 506
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 7/56 (12%)
Query: 611 IGNLTRIQTLNLSHNNLTGL-IPSTFSNLKHIESLDLSYNKLNG------KIPHQL 659
IG+L ++ LN++HN + +P FSNL ++E LDLS NK+ ++ HQ+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 593 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 652
L+ LDLS +L P +L+ +Q LN+SHNN L + L ++ LD S N +
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 531
Query: 653 GKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPA 712
+L + S+A+ NL+ T + +F + + L + C +P+
Sbjct: 532 TSKKQELQHFPS----SLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 587
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 110/278 (39%), Gaps = 25/278 (8%)
Query: 97 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIP-ISLEPLFNHSRLKIFDA 155
+ SL+ L +SN+ + S V L S+E L LS N + F + LK D
Sbjct: 324 LKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380
Query: 156 ANNEIKAEITES------HSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSH 209
+ N + IT S L +FQ L S + ++ +Y + +SH
Sbjct: 381 SFNGV---ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY-------LDISH 430
Query: 210 VNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSH-RWLRFLDVSNNNFQGHIPVE 268
+ F N + + L L + +S F I + R L FLD+S + P
Sbjct: 431 THTRVAF-NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489
Query: 269 IGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFL 328
L SL N+S N S + +N LQ+LD S N + + L +L FL
Sbjct: 490 FNS-LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 548
Query: 329 ALSNNNLKGHMFSRNFN--LTNLRSLQLEGNHLEGEIP 364
L+ N+ ++F + + R L +E +E P
Sbjct: 549 NLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP 586
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 417 QLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNML--HGQLKRGTFFHCSSLVTLDL 474
+L SL+ L + N + P S+E + LS+N L G + F +SL LDL
Sbjct: 323 KLKSLKRLTFTSNKGGNAFSEVDLP-SLEFLDLSRNGLSFKGCCSQSDF-GTTSLKYLDL 380
Query: 475 SYNRLNGSIPNWVDGLSQLSHLILGHNNLE 504
S+N + N++ GL QL HL H+NL+
Sbjct: 381 SFNGVITMSSNFL-GLEQLEHLDFQHSNLK 409
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 301 QILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLE 360
QIL L +NQ+T ++ + S +NL+ L L +N L +LT L L L N L
Sbjct: 43 QILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 361 GEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG-FCQLY 419
+ L+ L++ N L+ ++PR + LT L H+ + +N L+ IP G F +L
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS-IPHGAFDRLS 159
Query: 420 SL 421
SL
Sbjct: 160 SL 161
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 6/84 (7%)
Query: 72 SLMHLQELYIDNNDLRGSLP-WCLANMTSLRILDVSSNQLTGSISS--SPLVHLTSIEEL 128
SL++L+ELY+ +N L G+LP ++T L +LD+ +NQLT S+ LVHL E
Sbjct: 62 SLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLK--ELF 118
Query: 129 MLSNNHFQIPISLEPLFNHSRLKI 152
M N ++P +E L + + L +
Sbjct: 119 MCCNKLTELPRGIERLTHLTHLAL 142
Score = 36.6 bits (83), Expect = 0.061, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 25/107 (23%)
Query: 422 QILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLN 480
QIL + DN I+ P F L ++++++L N L G L G F + L LDL N+L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 481 -----------------------GSIPNWVDGLSQLSHLILGHNNLE 504
+P ++ L+ L+HL L N L+
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148
Score = 34.3 bits (77), Expect = 0.29, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 19/139 (13%)
Query: 577 TTKNIAYIYQGKVLSLLSG----------LDLSCNKLIGHIPPQI-GNLTRIQTLNLSHN 625
T I Y++ ++ L G L L N+L G +P + +LT++ L+L N
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTN 98
Query: 626 NLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQ 685
LT L + F L H++ L + NKL ++P + L L ++ N L IP
Sbjct: 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPH---- 152
Query: 686 FATFNESSYEGNTFLCGLP 704
F+ S + +L G P
Sbjct: 153 -GAFDRLSSLTHAYLFGNP 170
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 271 DILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLAL 330
D L +L + N L + F ++ L +LDL NQLT +P + V+L+ L +
Sbjct: 61 DSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFM 119
Query: 331 SNNNLKGHMFSRNFN-LTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNN 381
N L R LT+L L L+ N L+ + + SSL YL N
Sbjct: 120 CCNKLT--ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 11/128 (8%)
Query: 593 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKL- 651
L+ LDLS +L L R+Q LN+SHNNL L S ++ L + +LD S+N++
Sbjct: 470 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 529
Query: 652 --NGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICR 709
G + H K+LA F++ N+++ + F + E FL + C
Sbjct: 530 TSKGILQH---FPKSLAFFNLTNNSVAC-----ICEHQKFLQWVKEQKQFLVNVEQMTCA 581
Query: 710 SPATMSEA 717
+P M+ +
Sbjct: 582 TPVEMNTS 589
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 611 IGNLTRIQTLNLSHNNL-TGLIPSTFSNLKHIESLDLSYN 649
IG L ++ LN++HN + + +P+ FSNL ++ +DLSYN
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 72/175 (41%), Gaps = 32/175 (18%)
Query: 308 NQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSL 367
+Q ++P+ + S N++ LK + FS N + L+ L L +E ++
Sbjct: 15 DQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFS---NFSELQWLDLSRCEIETIEDKAW 71
Query: 368 SKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEG--PIPVGFCQLYSLQILD 425
L L L N + P LT L++++ E L P+G QL +L+ L+
Sbjct: 72 HGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIG--QLITLKKLN 129
Query: 426 ISDNNI-SGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRL 479
++ N I S LP+ F L+ +LV +DLSYN +
Sbjct: 130 VAHNFIHSCKLPAYFSNLT------------------------NLVHVDLSYNYI 160
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 99/376 (26%), Positives = 149/376 (39%), Gaps = 62/376 (16%)
Query: 273 LPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSN 332
L +L N S N L P N+ L + ++NNQ+ P + NL L L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFN 116
Query: 333 NNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG 392
N + +N LTNL L+L N + +LS +SL+ L N K P L
Sbjct: 117 NQITDIDPLKN--LTNLNRLELSSNTISD--ISALSGLTSLQQLNFGNQVTDLK-P--LA 169
Query: 393 NLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKN 452
NLT L+ + + N + I V +L +L+ L ++N IS PL I +L +
Sbjct: 170 NLTTLERLDISSNKVSD-ISV-LAKLTNLESLIATNNQISD-----ITPLGI-LTNLDEL 221
Query: 453 MLHG-QLKR-GTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVX 510
L+G QLK GT ++L LDL+ N+++ P + GL++L+ L LG N + P+
Sbjct: 222 SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA 279
Query: 511 XXXXXXXXXXXXXXXXXHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQI 570
PI + T L NN + P + + +
Sbjct: 280 GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL-------- 331
Query: 571 HENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGL 630
+ Y KV + S + NLT I L+ HN ++ L
Sbjct: 332 ------------FFYNNKVSDVSS----------------LANLTNINWLSAGHNQISDL 363
Query: 631 IPSTFSNLKHIESLDL 646
P +NL I L L
Sbjct: 364 TP--LANLTRITQLGL 377
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 18/124 (14%)
Query: 69 GLCSLMHLQELYIDN--NDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIE 126
L L LQ+L N DL+ LAN+T+L LD+SSN+++ S L LT++E
Sbjct: 146 ALSGLTSLQQLNFGNQVTDLK-----PLANLTTLERLDISSNKVS---DISVLAKLTNLE 197
Query: 127 ELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIK-----AEITESHSLTAPNFQLQALS 181
L+ +NN + PL + L N++K A +T L N Q+ L+
Sbjct: 198 SLIATNNQIS---DITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA 254
Query: 182 LSSG 185
SG
Sbjct: 255 PLSG 258
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 91/348 (26%), Positives = 156/348 (44%), Gaps = 40/348 (11%)
Query: 69 GLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 128
G+ L +L ++ NN L P L N+T L + +++NQ+ +PL +LT++ L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA---DITPLANLTNLTGL 112
Query: 129 MLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGD 188
L NN ++PL N + L + ++N I ++I+ LT+ LQ L+ +G+
Sbjct: 113 TLFNNQI---TDIDPLKNLTNLNRLELSSNTI-SDISALSGLTS----LQQLN----FGN 160
Query: 189 GVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSH 248
VT K L + LE + +S N + +L T L L N+ ++ L I ++
Sbjct: 161 QVTDLKPLANLTTLERLDISS-NKVSDIS--VLAKLTNLESLIATNNQISDITPLGILTN 217
Query: 249 RWLRFLDVSNNNFQGHIPVEIGDI--LPSLISFNISMNALDSSIPSSFGNMNFLQILDLS 306
L L ++ N + +IG + L +L +++ N + + P + L L L
Sbjct: 218 --LDELSLNGNQLK-----DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 268
Query: 307 NNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQS 366
NQ++ P + NLE L+ N L+ S NL NL L L N++ P
Sbjct: 269 ANQISNISPLAGLTALTNLE---LNENQLED--ISPISNLKNLTYLTLYFNNISDISP-- 321
Query: 367 LSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG 414
+S + L+ L+ NN +S L NLT + + N + P+
Sbjct: 322 VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPLA 367
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 11/128 (8%)
Query: 593 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKL- 651
L+ LDLS +L L R+Q LN+SHNNL L S ++ L + +LD S+N++
Sbjct: 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534
Query: 652 --NGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICR 709
G + H K+LA F++ N+++ + F + E FL + C
Sbjct: 535 TSKGILQH---FPKSLAFFNLTNNSVA-----CICEHQKFLQWVKEQKQFLVNVEQMTCA 586
Query: 710 SPATMSEA 717
+P M+ +
Sbjct: 587 TPVEMNTS 594
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 611 IGNLTRIQTLNLSHNNL-TGLIPSTFSNLKHIESLDLSYN 649
IG L ++ LN++HN + + +P+ FSNL ++ +DLSYN
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 72/175 (41%), Gaps = 32/175 (18%)
Query: 308 NQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSL 367
+Q ++P+ + S N++ LK + FS N + L+ L L +E ++
Sbjct: 20 DQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFS---NFSELQWLDLSRCEIETIEDKAW 76
Query: 368 SKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEG--PIPVGFCQLYSLQILD 425
L L L N + P LT L++++ E L P+G QL +L+ L+
Sbjct: 77 HGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIG--QLITLKKLN 134
Query: 426 ISDNNI-SGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRL 479
++ N I S LP+ F L+ +LV +DLSYN +
Sbjct: 135 VAHNFIHSCKLPAYFSNLT------------------------NLVHVDLSYNYI 165
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 98/376 (26%), Positives = 148/376 (39%), Gaps = 62/376 (16%)
Query: 273 LPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSN 332
L +L N S N L P N+ L + ++NNQ+ P + NL L L N
Sbjct: 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFN 121
Query: 333 NNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG 392
N + +N LTNL L+L N + +LS +SL+ L N K L
Sbjct: 122 NQITDIDPLKN--LTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTDLK---PLA 174
Query: 393 NLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKN 452
NLT L+ + + N + I V +L +L+ L ++N IS PL I +L +
Sbjct: 175 NLTTLERLDISSNKVSD-ISV-LAKLTNLESLIATNNQISD-----ITPLGI-LTNLDEL 226
Query: 453 MLHG-QLKR-GTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVX 510
L+G QLK GT ++L LDL+ N+++ P + GL++L+ L LG N + P+
Sbjct: 227 SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA 284
Query: 511 XXXXXXXXXXXXXXXXXHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQI 570
PI + T L NN + P + + +
Sbjct: 285 GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL-------- 336
Query: 571 HENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGL 630
+ Y KV + S + NLT I L+ HN ++ L
Sbjct: 337 ------------FFYNNKVSDVSS----------------LANLTNINWLSAGHNQISDL 368
Query: 631 IPSTFSNLKHIESLDL 646
P +NL I L L
Sbjct: 369 TP--LANLTRITQLGL 382
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 156/348 (44%), Gaps = 40/348 (11%)
Query: 69 GLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 128
G+ L +L ++ NN L P L N+T L + +++NQ+ +PL +LT++ L
Sbjct: 63 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA---DITPLANLTNLTGL 117
Query: 129 MLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGD 188
L NN ++PL N + L + ++N I ++I+ LT+ LQ LS +G+
Sbjct: 118 TLFNNQI---TDIDPLKNLTNLNRLELSSNTI-SDISALSGLTS----LQQLS----FGN 165
Query: 189 GVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSH 248
VT K L + LE + +S N + +L T L L N+ ++ L I ++
Sbjct: 166 QVTDLKPLANLTTLERLDISS-NKVSDIS--VLAKLTNLESLIATNNQISDITPLGILTN 222
Query: 249 RWLRFLDVSNNNFQGHIPVEIGDI--LPSLISFNISMNALDSSIPSSFGNMNFLQILDLS 306
L L ++ N + +IG + L +L +++ N + + P + L L L
Sbjct: 223 --LDELSLNGNQLK-----DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 273
Query: 307 NNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQS 366
NQ++ P + NLE L+ N L+ S NL NL L L N++ P
Sbjct: 274 ANQISNISPLAGLTALTNLE---LNENQLED--ISPISNLKNLTYLTLYFNNISDISP-- 326
Query: 367 LSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG 414
+S + L+ L+ NN +S L NLT + + N + P+
Sbjct: 327 VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPLA 372
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 616 RIQTLNLSHNNLTGL-IPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNN 674
+IQ + + +NNL + ++ K + L+ YN+L GK+P E+K LA ++AYN
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIK-LASLNLAYNQ 364
Query: 675 LSGEIPEWTAQFATFNE 691
++ EIP A F F E
Sbjct: 365 IT-EIP---ANFCGFTE 377
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 8/87 (9%)
Query: 593 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNL-KHIESLDLSYNKL 651
L L+ N+L G +P G+ ++ +LNL++N +T IP+ F + +E+L ++NKL
Sbjct: 332 LGXLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKL 389
Query: 652 NGKIPHQLVELKTLAVFSV---AYNNL 675
IP+ + + K+++V S +YN +
Sbjct: 390 K-YIPN-IFDAKSVSVXSAIDFSYNEI 414
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 69 GLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 128
GL L L+ LY+ NN + L+ +T L L + NQ+ + PL LT ++ L
Sbjct: 127 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQIRRIV---PLARLTKLQNL 181
Query: 129 MLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPN 174
LS NH +L L N L++F + + I +L PN
Sbjct: 182 YLSKNHISDLRALRGLKNLDVLELF--SQEALNKPINHQSNLVVPN 225
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 69 GLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 128
GL L L+ LY+ NN + L+ +T L L + NQ++ + PL LT ++ L
Sbjct: 126 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 180
Query: 129 MLSNNHFQIPISLEPLFNHSRLKIF 153
LS NH +L L N L++F
Sbjct: 181 YLSKNHISDLRALAGLKNLDVLELF 205
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 610 QIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE-LKTLAVF 668
Q+ NL +Q LNLS+N GL F +E LD+++ L+ K PH + L L V
Sbjct: 370 QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVL 429
Query: 669 SVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCG 702
++++ L A + +GN+F G
Sbjct: 430 NLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDG 463
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 14/190 (7%)
Query: 324 NLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGN---HLEGEIPQSLSKCSSLEGLYLNN 380
NLE L L +N++ NF NL+ L + N ++ + SL + ++L L N
Sbjct: 129 NLESLHLGSNHISSINLPENFPTQNLKVLDFQNNAIHYISRKDTNSLEQATNL-SLNFNG 187
Query: 381 NSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQIL------DISDNNISGS 434
N + G P ++ + + L I Q +LQ L D D ++ +
Sbjct: 188 NDIKGIEPGAF--ISKIFQSLKFGGSLNLFIIFKGLQNSTLQSLWLGTFEDTDDQYLTSA 245
Query: 435 LPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLS 494
+S+E ++L K+ L TF + + LDL+ LNG +P+ ++G++ L
Sbjct: 246 TFEGLCDMSVESINLQKHRF-SDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLK 303
Query: 495 HLILGHNNLE 504
L+L N+ +
Sbjct: 304 KLVLNANSFD 313
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 87/354 (24%), Positives = 139/354 (39%), Gaps = 66/354 (18%)
Query: 334 NLKGHMFS-------RNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGK 386
NL+ H FS R F T ++ L L HL G +P + +SL+ L LN NS
Sbjct: 259 NLQKHRFSDLSSSTFRCF--TRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQL 315
Query: 387 IPRWLGNLTGLKHIIMPENHLEGPIPVGFCQ-LYSLQILDISDNNISGSLPSCFHPLSIE 445
+ L+ + + N + + + L +LQ LD+S ++I S C L
Sbjct: 316 CQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEAS-DCCNLQL--- 371
Query: 446 QVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEG 505
KN+ H Q L+LSYN G QL L + +L
Sbjct: 372 -----KNLRHLQY-------------LNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHV 413
Query: 506 EVPVXXXXXXXXXXXXXXXXXXHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIP 565
+ P H P F N L N S+ L +TS ++
Sbjct: 414 KAP-------------------HSP----FQNLHLLRVLNLSHCL--LDTS--NQHLLAG 446
Query: 566 AEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDL----SCNKLIGHIPPQIGNLTRIQTLN 621
+ H N + + I + +L ++ L++ SCN L+ L + L+
Sbjct: 447 LQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCN-LLSIDQQAFHGLRNVNHLD 505
Query: 622 LSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNL 675
LSHN+LTG S+LK + L+++ N + PH L L ++ ++++N L
Sbjct: 506 LSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPALSQQSIINLSHNPL 558
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 615 TRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNN 674
T I LNL+HN L L + F+ + SLD+ +N ++ P +L L V ++ +N
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 675 LSGEIPEWTAQFAT 688
LS ++ + T F T
Sbjct: 95 LS-QLSDKTFAFCT 107
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%)
Query: 591 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNK 650
S L+ LD+ N + P L ++ LNL HN L+ L TF+ ++ L L N
Sbjct: 59 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 118
Query: 651 LNGKIPHQLVELKTLAVFSVAYNNLSG 677
+ + V+ K L +++N LS
Sbjct: 119 IQKIKNNPFVKQKNLITLDLSHNGLSS 145
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 120/505 (23%), Positives = 203/505 (40%), Gaps = 102/505 (20%)
Query: 43 ESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRI 102
+ +P LK L++ + L S++ D+ +L EL++ +N ++ +L
Sbjct: 80 QKLPMLKVLNLQHNEL----SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 135
Query: 103 LDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLE-PLFNHSRLKIFDAANNEIK 161
LD+S N L+ S V L +++EL+LSNN Q S E +F +S LK + ++N+IK
Sbjct: 136 LDLSHNGLS-STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 194
Query: 162 A------------------------EITESHSLTAPNFQLQALSLSSGY---GDGVTFPK 194
+TE L N ++ LSLS+ TF
Sbjct: 195 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 254
Query: 195 FLYHQHDLEDVRLSHVNMDG-EFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRF 253
+ + D+ +++N+ G + WL +L +L +++ F +H +R+
Sbjct: 255 LKWTNLTMLDLSYNNLNVVGNDSFAWL----PQLEYFFLEYNNIQHLFSHSLHGLFNVRY 310
Query: 254 LDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGE 313
L++ S +IS+ +L SF + L+ L++ +N + G
Sbjct: 311 LNLKR----------------SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG- 353
Query: 314 IPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTN----------LRSLQLEGNHLEGEI 363
I ++ +NL++L+LSN+ F+ LTN L L L N +
Sbjct: 354 IKSNMFTGLINLKYLSLSNS------FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE 407
Query: 364 PQSLSKCSSLEGLYLNNNSLSGKIP--RWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSL 421
+ S LE L L N + ++ W G L + I + N F + SL
Sbjct: 408 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRG-LENIFEIYLSYNKYLQLTRNSFALVPSL 466
Query: 422 QIL---DISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNR 478
Q L ++ N+ S PS F PL +L LDLS N
Sbjct: 467 QRLMLRRVALKNVDSS-PSPFQPLR------------------------NLTILDLSNNN 501
Query: 479 LNGSIPNWVDGLSQLSHLILGHNNL 503
+ + ++GL +L L L HNNL
Sbjct: 502 IANINDDMLEGLEKLEILDLQHNNL 526
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 109/278 (39%), Gaps = 29/278 (10%)
Query: 402 MPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQV-HLSKNMLHGQLKR 460
+ N L F + L LD+ N IS P L + +V +L N L QL
Sbjct: 42 LTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL-SQLSD 100
Query: 461 GTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVXXXXXXXXXXX 520
TF C++L L L N + N L L L HN L
Sbjct: 101 KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS--------------- 145
Query: 521 XXXXXXXHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKN 580
G + L S+N +LK E + +S + E ++ EF+
Sbjct: 146 -----TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC 200
Query: 581 IAYIYQGKVLSL-LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLK 639
I G++ L L+ + L + L + ++ N T I+ L+LS++ L+ +TF LK
Sbjct: 201 FHAI--GRLFGLFLNNVQLGPS-LTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLK 256
Query: 640 --HIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNL 675
++ LDLSYN LN L L F + YNN+
Sbjct: 257 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 294
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 102/430 (23%), Positives = 159/430 (36%), Gaps = 60/430 (13%)
Query: 267 VEIGDILPSLIS-FNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNL 325
++ D LP+ I+ N++ N L ++F + L LD+ N ++ PE L L
Sbjct: 27 TQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPML 85
Query: 326 EFLALSNNNLKGHMFSRNFNL-TNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLS 384
+ L L +N L + + F TNL L L N ++ K +L L L++N LS
Sbjct: 86 KVLNLQHNEL-SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 144
Query: 385 GKIPRWLGNLTGLKHIIMPENHLEG--PIPVGFCQLYSLQILDISDNNISGSLPSCFHPL 442
L L+ +++ N ++ + SL+ L++S N I P CFH +
Sbjct: 145 STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI 204
Query: 443 ----------------------------SIEQVHLSKNMLHGQLKRGTFF--HCSSLVTL 472
SI + LS + L TF ++L L
Sbjct: 205 GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL-STTSNTTFLGLKWTNLTML 263
Query: 473 DLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXXHGPIP 532
DLSYN LN + L QL + L +NN++ I
Sbjct: 264 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 323
Query: 533 ----PCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGK 588
P D+ + LK E L M+ IP I N N+ Y+
Sbjct: 324 LASLPKIDDFSFQW-------LKCLE-HLNMEDNDIPG---IKSNMFTGLINLKYLSLSN 372
Query: 589 VLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSY 648
+ L L + H P I LNL+ N ++ + FS L H+E LDL
Sbjct: 373 SFTSLRTLTNETFVSLAHSPLHI--------LNLTKNKISKIESDAFSWLGHLEVLDLGL 424
Query: 649 NKLNGKIPHQ 658
N++ ++ Q
Sbjct: 425 NEIGQELTGQ 434
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 399 HIIMPENHLEGPIPVG-FCQLYSLQILDISDNNISGSLPSCF-HPLSIEQVHLSKNMLHG 456
HI+ E++ IPV F L+ L+I+D+ NN++ S F + +S++ ++L KN++
Sbjct: 549 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 608
Query: 457 QLKRGTFFHCSSLVTLDLSYNRLNGSIP------NWVD 488
K+ +L LD+ +N + + NW++
Sbjct: 609 VEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWIN 646
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 615 TRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNN 674
T I LNL+HN L L + F+ + SLD+ +N ++ P +L L V ++ +N
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 675 LSGEIPEWTAQFAT 688
LS ++ + T F T
Sbjct: 85 LS-QLSDKTFAFCT 97
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%)
Query: 591 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNK 650
S L+ LD+ N + P L ++ LNL HN L+ L TF+ ++ L L N
Sbjct: 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 108
Query: 651 LNGKIPHQLVELKTLAVFSVAYNNLSG 677
+ + V+ K L +++N LS
Sbjct: 109 IQKIKNNPFVKQKNLITLDLSHNGLSS 135
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 120/505 (23%), Positives = 203/505 (40%), Gaps = 102/505 (20%)
Query: 43 ESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRI 102
+ +P LK L++ + L S++ D+ +L EL++ +N ++ +L
Sbjct: 70 QKLPMLKVLNLQHNEL----SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 125
Query: 103 LDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLE-PLFNHSRLKIFDAANNEIK 161
LD+S N L+ S V L +++EL+LSNN Q S E +F +S LK + ++N+IK
Sbjct: 126 LDLSHNGLS-STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184
Query: 162 A------------------------EITESHSLTAPNFQLQALSLSSGY---GDGVTFPK 194
+TE L N ++ LSLS+ TF
Sbjct: 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244
Query: 195 FLYHQHDLEDVRLSHVNMDG-EFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRF 253
+ + D+ +++N+ G + WL +L +L +++ F +H +R+
Sbjct: 245 LKWTNLTMLDLSYNNLNVVGNDSFAWL----PQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300
Query: 254 LDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGE 313
L++ S +IS+ +L SF + L+ L++ +N + G
Sbjct: 301 LNLKR----------------SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG- 343
Query: 314 IPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTN----------LRSLQLEGNHLEGEI 363
I ++ +NL++L+LSN+ F+ LTN L L L N +
Sbjct: 344 IKSNMFTGLINLKYLSLSNS------FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE 397
Query: 364 PQSLSKCSSLEGLYLNNNSLSGKIP--RWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSL 421
+ S LE L L N + ++ W G L + I + N F + SL
Sbjct: 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRG-LENIFEIYLSYNKYLQLTRNSFALVPSL 456
Query: 422 QIL---DISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNR 478
Q L ++ N+ S PS F PL +L LDLS N
Sbjct: 457 QRLMLRRVALKNVDSS-PSPFQPLR------------------------NLTILDLSNNN 491
Query: 479 LNGSIPNWVDGLSQLSHLILGHNNL 503
+ + ++GL +L L L HNNL
Sbjct: 492 IANINDDMLEGLEKLEILDLQHNNL 516
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 109/278 (39%), Gaps = 29/278 (10%)
Query: 402 MPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQV-HLSKNMLHGQLKR 460
+ N L F + L LD+ N IS P L + +V +L N L QL
Sbjct: 32 LTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL-SQLSD 90
Query: 461 GTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVXXXXXXXXXXX 520
TF C++L L L N + N L L L HN L
Sbjct: 91 KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS--------------- 135
Query: 521 XXXXXXXHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKN 580
G + L S+N +LK E + +S + E ++ EF+
Sbjct: 136 -----TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC 190
Query: 581 IAYIYQGKVLSL-LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLK 639
I G++ L L+ + L + L + ++ N T I+ L+LS++ L+ +TF LK
Sbjct: 191 FHAI--GRLFGLFLNNVQLGPS-LTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLK 246
Query: 640 --HIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNL 675
++ LDLSYN LN L L F + YNN+
Sbjct: 247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 102/430 (23%), Positives = 159/430 (36%), Gaps = 60/430 (13%)
Query: 267 VEIGDILPSLIS-FNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNL 325
++ D LP+ I+ N++ N L ++F + L LD+ N ++ PE L L
Sbjct: 17 TQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPML 75
Query: 326 EFLALSNNNLKGHMFSRNFNL-TNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLS 384
+ L L +N L + + F TNL L L N ++ K +L L L++N LS
Sbjct: 76 KVLNLQHNEL-SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134
Query: 385 GKIPRWLGNLTGLKHIIMPENHLEG--PIPVGFCQLYSLQILDISDNNISGSLPSCFHPL 442
L L+ +++ N ++ + SL+ L++S N I P CFH +
Sbjct: 135 STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI 194
Query: 443 ----------------------------SIEQVHLSKNMLHGQLKRGTFF--HCSSLVTL 472
SI + LS + L TF ++L L
Sbjct: 195 GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL-STTSNTTFLGLKWTNLTML 253
Query: 473 DLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXXHGPIP 532
DLSYN LN + L QL + L +NN++ I
Sbjct: 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 313
Query: 533 ----PCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGK 588
P D+ + LK E L M+ IP I N N+ Y+
Sbjct: 314 LASLPKIDDFSFQW-------LKCLE-HLNMEDNDIPG---IKSNMFTGLINLKYLSLSN 362
Query: 589 VLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSY 648
+ L L + H P I NLT+ N ++ + FS L H+E LDL
Sbjct: 363 SFTSLRTLTNETFVSLAHSPLHILNLTK--------NKISKIESDAFSWLGHLEVLDLGL 414
Query: 649 NKLNGKIPHQ 658
N++ ++ Q
Sbjct: 415 NEIGQELTGQ 424
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 399 HIIMPENHLEGPIPVG-FCQLYSLQILDISDNNISGSLPSCF-HPLSIEQVHLSKNMLHG 456
HI+ E++ IPV F L+ L+I+D+ NN++ S F + +S++ ++L KN++
Sbjct: 539 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598
Query: 457 QLKRGTFFHCSSLVTLDLSYNRLNGSIP------NWVD 488
K+ +L LD+ +N + + NW++
Sbjct: 599 VEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWIN 636
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 69 GLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 128
GL L L+ LY+ NN + L+ +T L L + NQ++ + PL LT ++ L
Sbjct: 129 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 183
Query: 129 MLSNNHFQIPISLEPLFNHSRLKIF 153
LS NH +L L N L++F
Sbjct: 184 YLSKNHISDLRALAGLKNLDVLELF 208
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 615 TRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNN 674
T I LNL+HN L L + F+ + SLD+ +N ++ P +L L V ++ +N
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 675 LSGEIPEWTAQFAT 688
LS ++ + T F T
Sbjct: 90 LS-QLSDKTFAFCT 102
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%)
Query: 591 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNK 650
S L+ LD+ N + P L ++ LNL HN L+ L TF+ ++ L L N
Sbjct: 54 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 113
Query: 651 LNGKIPHQLVELKTLAVFSVAYNNLSG 677
+ + V+ K L +++N LS
Sbjct: 114 IQKIKNNPFVKQKNLITLDLSHNGLSS 140
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 120/505 (23%), Positives = 203/505 (40%), Gaps = 102/505 (20%)
Query: 43 ESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRI 102
+ +P LK L++ + L S++ D+ +L EL++ +N ++ +L
Sbjct: 75 QKLPMLKVLNLQHNEL----SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 130
Query: 103 LDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLE-PLFNHSRLKIFDAANNEIK 161
LD+S N L+ S V L +++EL+LSNN Q S E +F +S LK + ++N+IK
Sbjct: 131 LDLSHNGLS-STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 189
Query: 162 A------------------------EITESHSLTAPNFQLQALSLSSGY---GDGVTFPK 194
+TE L N ++ LSLS+ TF
Sbjct: 190 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 249
Query: 195 FLYHQHDLEDVRLSHVNMDG-EFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRF 253
+ + D+ +++N+ G + WL +L +L +++ F +H +R+
Sbjct: 250 LKWTNLTMLDLSYNNLNVVGNDSFAWL----PQLEYFFLEYNNIQHLFSHSLHGLFNVRY 305
Query: 254 LDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGE 313
L++ S +IS+ +L SF + L+ L++ +N + G
Sbjct: 306 LNLKR----------------SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG- 348
Query: 314 IPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTN----------LRSLQLEGNHLEGEI 363
I ++ +NL++L+LSN+ F+ LTN L L L N +
Sbjct: 349 IKSNMFTGLINLKYLSLSNS------FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE 402
Query: 364 PQSLSKCSSLEGLYLNNNSLSGKIP--RWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSL 421
+ S LE L L N + ++ W G L + I + N F + SL
Sbjct: 403 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRG-LENIFEIYLSYNKYLQLTRNSFALVPSL 461
Query: 422 QIL---DISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNR 478
Q L ++ N+ S PS F PL +L LDLS N
Sbjct: 462 QRLMLRRVALKNVDSS-PSPFQPLR------------------------NLTILDLSNNN 496
Query: 479 LNGSIPNWVDGLSQLSHLILGHNNL 503
+ + ++GL +L L L HNNL
Sbjct: 497 IANINDDMLEGLEKLEILDLQHNNL 521
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 109/278 (39%), Gaps = 29/278 (10%)
Query: 402 MPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQV-HLSKNMLHGQLKR 460
+ N L F + L LD+ N IS P L + +V +L N L QL
Sbjct: 37 LTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL-SQLSD 95
Query: 461 GTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVXXXXXXXXXXX 520
TF C++L L L N + N L L L HN L
Sbjct: 96 KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS--------------- 140
Query: 521 XXXXXXXHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKN 580
G + L S+N +LK E + +S + E ++ EF+
Sbjct: 141 -----TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC 195
Query: 581 IAYIYQGKVLSL-LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLK 639
I G++ L L+ + L + L + ++ N T I+ L+LS++ L+ +TF LK
Sbjct: 196 FHAI--GRLFGLFLNNVQLGPS-LTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLK 251
Query: 640 --HIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNL 675
++ LDLSYN LN L L F + YNN+
Sbjct: 252 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 289
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 102/430 (23%), Positives = 159/430 (36%), Gaps = 60/430 (13%)
Query: 267 VEIGDILPSLIS-FNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNL 325
++ D LP+ I+ N++ N L ++F + L LD+ N ++ PE L L
Sbjct: 22 TQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPML 80
Query: 326 EFLALSNNNLKGHMFSRNFNL-TNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLS 384
+ L L +N L + + F TNL L L N ++ K +L L L++N LS
Sbjct: 81 KVLNLQHNEL-SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 139
Query: 385 GKIPRWLGNLTGLKHIIMPENHLEG--PIPVGFCQLYSLQILDISDNNISGSLPSCFHPL 442
L L+ +++ N ++ + SL+ L++S N I P CFH +
Sbjct: 140 STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI 199
Query: 443 ----------------------------SIEQVHLSKNMLHGQLKRGTFF--HCSSLVTL 472
SI + LS + L TF ++L L
Sbjct: 200 GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL-STTSNTTFLGLKWTNLTML 258
Query: 473 DLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXXHGPIP 532
DLSYN LN + L QL + L +NN++ I
Sbjct: 259 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 318
Query: 533 ----PCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGK 588
P D+ + LK E L M+ IP I N N+ Y+
Sbjct: 319 LASLPKIDDFSFQW-------LKCLE-HLNMEDNDIPG---IKSNMFTGLINLKYLSLSN 367
Query: 589 VLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSY 648
+ L L + H P I NLT+ N ++ + FS L H+E LDL
Sbjct: 368 SFTSLRTLTNETFVSLAHSPLHILNLTK--------NKISKIESDAFSWLGHLEVLDLGL 419
Query: 649 NKLNGKIPHQ 658
N++ ++ Q
Sbjct: 420 NEIGQELTGQ 429
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 399 HIIMPENHLEGPIPVG-FCQLYSLQILDISDNNISGSLPSCF-HPLSIEQVHLSKNMLHG 456
HI+ E++ IPV F L+ L+I+D+ NN++ S F + +S++ ++L KN++
Sbjct: 544 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 603
Query: 457 QLKRGTFFHCSSLVTLDLSYNRLNGSIP------NWVD 488
K+ +L LD+ +N + + NW++
Sbjct: 604 VEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWIN 641
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 121/492 (24%), Positives = 202/492 (41%), Gaps = 67/492 (13%)
Query: 44 SMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRIL 103
S P L+ L +S + T I D SL HL L + N ++ + ++SL+ L
Sbjct: 74 SFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 129
Query: 104 DVSSNQLTGSISSSPLVHLTSIEELMLSNN---HFQIPISLEPLFNHSRLKIFDAANNEI 160
L S+ + P+ HL +++EL +++N F++P E N + L+ D ++N+I
Sbjct: 130 VAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLP---EYFSNLTNLEHLDLSSNKI 185
Query: 161 KA----EITESHSL--------------------TAPNFQLQALSLSSGYGDGVTFPKFL 196
++ ++ H + +L L+L + + +
Sbjct: 186 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCI 245
Query: 197 YHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDV 256
LE RL + GEF N E N + +L G L I R L +LD
Sbjct: 246 QGLAGLEVHRL----VLGEFRN---EGNLE----KFDKSALEGLCNLTIEEFR-LAYLDY 293
Query: 257 SNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNF-LQILDLSNNQLTGEIP 315
+ +++ + L ++ SF++ ++ S+ NF Q L+L N + G+ P
Sbjct: 294 YLDGI-----IDLFNCLTNVSSFSLVSVTIERVKDFSY---NFGWQHLELVNCKF-GQFP 344
Query: 316 EHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHL--EGEIPQSLSKCSSL 373
S L F +N G+ FS +L +L L L N L +G QS SL
Sbjct: 345 TLKLKSLKRLTF----TSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISL 399
Query: 374 EGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG-FCQLYSLQILDISDNNIS 432
+ L L+ N + +LG L L+H+ ++L+ F L +L LDIS +
Sbjct: 400 KYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 458
Query: 433 GSLPSCFHPLS-IEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLS 491
+ F+ LS +E + ++ N F +L LDLS +L P + LS
Sbjct: 459 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 518
Query: 492 QLSHLILGHNNL 503
L L + HNN
Sbjct: 519 SLQVLNMSHNNF 530
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 7/56 (12%)
Query: 611 IGNLTRIQTLNLSHNNLTGL-IPSTFSNLKHIESLDLSYNKLNG------KIPHQL 659
IG+L ++ LN++HN + +P FSNL ++E LDLS NK+ ++ HQ+
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 593 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 652
L+ LDLS +L P +L+ +Q LN+SHNN L + L ++ LD S N +
Sbjct: 496 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 555
Query: 653 GKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPA 712
+L + S+A+ NL+ T + +F + + L + C +P+
Sbjct: 556 TSKKQELQHFPS----SLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 611
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 103/379 (27%), Positives = 154/379 (40%), Gaps = 68/379 (17%)
Query: 273 LPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSN 332
L +L N S N L P N+ L + ++NNQ+ P + NL L L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFN 116
Query: 333 NNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG 392
N + +N LTNL L+L N + +LS +SL+ L N K P L
Sbjct: 117 NQITDIDPLKN--LTNLNRLELSSNTISD--ISALSGLTSLQQLNFGNQVTDLK-P--LA 169
Query: 393 NLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKN 452
NLT L+ + + N + I V +L +L+ L ++N IS PL I +L +
Sbjct: 170 NLTTLERLDISSNKVSD-ISV-LAKLTNLESLIATNNQISD-----ITPLGI-LTNLDEL 221
Query: 453 MLHG-QLKR-GTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVX 510
L+G QLK GT ++L LDL+ N+++ P + GL++L+ L LG N + P+
Sbjct: 222 SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA 279
Query: 511 XXXXXXXXXXXXXXXXXHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQI 570
T L + N + P
Sbjct: 280 GLTAL----------------------TNLELNENQLEDISPISN--------------- 302
Query: 571 HENFEFTT---KNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNL 627
+N + T NI+ I L+ L L S NK + + + NLT I L+ HN +
Sbjct: 303 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNK-VSDVS-SLANLTNINWLSAGHNQI 360
Query: 628 TGLIPSTFSNLKHIESLDL 646
+ L P +NL I L L
Sbjct: 361 SDLTP--LANLTRITQLGL 377
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 91/348 (26%), Positives = 157/348 (45%), Gaps = 40/348 (11%)
Query: 69 GLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 128
G+ L +L ++ NN L P L N+T L + +++NQ+ +PL +LT++ L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA---DITPLANLTNLTGL 112
Query: 129 MLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGD 188
L NN ++PL N + L + ++N I ++I+ LT+ LQ L+ +G+
Sbjct: 113 TLFNNQI---TDIDPLKNLTNLNRLELSSNTI-SDISALSGLTS----LQQLN----FGN 160
Query: 189 GVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSH 248
VT K L + LE + +S N + +L T L L N+ ++ L I ++
Sbjct: 161 QVTDLKPLANLTTLERLDISS-NKVSDIS--VLAKLTNLESLIATNNQISDITPLGILTN 217
Query: 249 RWLRFLDVSNNNFQGHIPVEIGDI--LPSLISFNISMNALDSSIPSSFGNMNFLQILDLS 306
L L ++ N + +IG + L +L +++ N + + P + L L L
Sbjct: 218 --LDELSLNGNQLK-----DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 268
Query: 307 NNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQS 366
NQ++ P + NLE L+ N L+ S NL NL L L N++ P
Sbjct: 269 ANQISNISPLAGLTALTNLE---LNENQLED--ISPISNLKNLTYLTLYFNNISDISP-- 321
Query: 367 LSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG 414
+S + L+ L+ +NN +S L NLT + + N + P+
Sbjct: 322 VSSLTKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLTPLA 367
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 92/234 (39%), Gaps = 49/234 (20%)
Query: 221 LENNTKLRQLYLVNDS---------LTGPFRL------------PIHSHRWLRFLDVSNN 259
L+N T LR+LYL D+ LT + L P+ + L +L V+ +
Sbjct: 106 LQNLTNLRELYLNEDNISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTES 165
Query: 260 NFQGHIPV--------------EIGDILP-----SLISFNISMNALDSSIPSSFGNMNFL 300
+ P+ +I DI P SL F +N + P N L
Sbjct: 166 KVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANXTRL 223
Query: 301 QILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLE 360
L + NN++T P + L +L + N + ++ LT L+ L + N +
Sbjct: 224 NSLKIGNNKITDLSP---LANLSQLTWLEIGTNQISDINAVKD--LTKLKXLNVGSNQIS 278
Query: 361 GEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG 414
L+ S L L+LNNN L + +G LT L + + +NH+ P+
Sbjct: 279 D--ISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRPLA 330
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 122/497 (24%), Positives = 206/497 (41%), Gaps = 68/497 (13%)
Query: 44 SMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRIL 103
S P L+ L +S + T I D SL HL L + N ++ + ++SL+ L
Sbjct: 50 SFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105
Query: 104 DVSSNQLTGSISSSPLVHLTSIEELMLSNN---HFQIPISLEPLFNHSRLKIFDAANNEI 160
L S+ + P+ HL +++EL +++N F++P E N + L+ D ++N+I
Sbjct: 106 VAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLP---EYFSNLTNLEHLDLSSNKI 161
Query: 161 KA----EITESHSL--------------------TAPNFQLQALSLSSGYGDGVTFPKFL 196
++ ++ H + +L L+L + + +
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCI 221
Query: 197 YHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDV 256
LE RL + GEF N E N + +L G L I R L +LD
Sbjct: 222 QGLAGLEVHRL----VLGEFRN---EGNLE----KFDKSALEGLCNLTIEEFR-LAYLDY 269
Query: 257 SNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNF-LQILDLSNNQLTGEIP 315
++ +++ + L ++ SF++ ++ S+ NF Q L+L N + G+ P
Sbjct: 270 YLDDI-----IDLFNCLTNVSSFSLVSVTIERVKDFSY---NFGWQHLELVNCKF-GQFP 320
Query: 316 EHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHL--EGEIPQSLSKCSSL 373
S L F +N G+ FS +L +L L L N L +G QS +SL
Sbjct: 321 TLKLKSLKRLTF----TSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375
Query: 374 EGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG-FCQLYSLQILDISDNNIS 432
+ L L+ N + +LG L L+H+ ++L+ F L +L LDIS +
Sbjct: 376 KYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434
Query: 433 GSLPSCFHPLS-IEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLS 491
+ F+ LS +E + ++ N F +L LDLS +L P + LS
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494
Query: 492 QLSHLILGHNNLEGEVP 508
L L + N L+ VP
Sbjct: 495 SLQVLNMASNQLKS-VP 510
Score = 36.2 bits (82), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 7/56 (12%)
Query: 611 IGNLTRIQTLNLSHNNLTGL-IPSTFSNLKHIESLDLSYNKLNG------KIPHQL 659
IG+L ++ LN++HN + +P FSNL ++E LDLS NK+ ++ HQ+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 251 LRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQL 310
L L ++ N+FQ + +I L +L ++S L+ P++F +++ LQ+L++++NQL
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Query: 311 TGEIPEHLAVSCVNLEFLALSNN 333
+P+ + +L+ + L N
Sbjct: 507 KS-VPDGIFDRLTSLQKIWLHTN 528
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 3/143 (2%)
Query: 268 EIGDILP-SLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLE 326
+I D LP S + ++S N L SF + LQ+LDLS ++ I + S +L
Sbjct: 21 KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLS 79
Query: 327 FLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSL-SG 385
L L+ N ++ L++L+ L +L + +L+ L + +N + S
Sbjct: 80 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139
Query: 386 KIPRWLGNLTGLKHIIMPENHLE 408
K+P + NLT L+H+ + N ++
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQ 162
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 69 GLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 128
GL L L+ LY+ NN + L+ +T L L + NQ++ + PL LT ++ L
Sbjct: 129 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 183
Query: 129 MLSNNHFQIPISLEPLFNHSRLKIF 153
LS NH +L L N L++F
Sbjct: 184 YLSKNHISDLRALAGLKNLDVLELF 208
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 69 GLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 128
GL L L+ LY+ NN + L+ +T L L + NQ++ + PL LT ++ L
Sbjct: 127 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 181
Query: 129 MLSNNHFQIPISLEPLFNHSRLKIF 153
LS NH +L L N L++F
Sbjct: 182 YLSKNHISDLRALAGLKNLDVLELF 206
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 69 GLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 128
GL L L+ LY+ NN + L+ +T L L + NQ++ + PL LT ++ L
Sbjct: 149 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 203
Query: 129 MLSNNHFQIPISLEPLFNHSRLKIF 153
LS NH +L L N L++F
Sbjct: 204 YLSKNHISDLRALAGLKNLDVLELF 228
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 10/102 (9%)
Query: 68 QGLCSLMHLQELYI------DNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVH 121
+ L L HL++L + +N LR LP LA + L +L S N L + +
Sbjct: 451 KDLTVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV---DGVAN 506
Query: 122 LTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAE 163
L ++EL+L NN Q +++PL + RL + + N + E
Sbjct: 507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 10/102 (9%)
Query: 68 QGLCSLMHLQELYI------DNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVH 121
+ L L HL++L + +N LR LP LA + L +L S N L + +
Sbjct: 451 KDLTVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV---DGVAN 506
Query: 122 LTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAE 163
L ++EL+L NN Q +++PL + RL + + N + E
Sbjct: 507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 69 GLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 128
GL L L+ LY+ NN + L+ +T L L + NQ++ + PL LT ++ L
Sbjct: 147 GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 201
Query: 129 MLSNNHFQIPISLEPLFNHSRLKIF 153
LS NH +L L N L++F
Sbjct: 202 YLSKNHISDLRALAGLKNLDVLELF 226
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 69 GLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 128
GL L L+ LY+ NN + L+ +T L L + NQ++ + PL LT ++ L
Sbjct: 147 GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 201
Query: 129 MLSNNHFQIPISLEPLFNHSRLKIF 153
LS NH +L L N L++F
Sbjct: 202 YLSKNHISDLRALAGLKNLDVLELF 226
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 69 GLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 128
GL L L+ LY+ NN + L+ +T L L + NQ++ + PL LT ++ L
Sbjct: 147 GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 201
Query: 129 MLSNNHFQIPISLEPLFNHSRLKIF 153
LS NH +L L N L++F
Sbjct: 202 YLSKNHISDLRALAGLKNLDVLELF 226
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 69 GLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 128
GL L L+ LY+ NN + L+ +T L L + NQ++ + PL LT ++ L
Sbjct: 124 GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 178
Query: 129 MLSNNHFQIPISLEPLFNHSRLKIF 153
LS NH +L L N L++F
Sbjct: 179 YLSKNHISDLRALAGLKNLDVLELF 203
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 101/379 (26%), Positives = 152/379 (40%), Gaps = 68/379 (17%)
Query: 273 LPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSN 332
L +L N S N L P N+ L + ++NNQ+ P + NL L L N
Sbjct: 66 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFN 120
Query: 333 NNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG 392
N + +N LTNL L+L N + +LS +SL+ L N K L
Sbjct: 121 NQITDIDPLKN--LTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTDLK---PLA 173
Query: 393 NLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKN 452
NLT L+ + + N + I V +L +L+ L ++N IS PL I +L +
Sbjct: 174 NLTTLERLDISSNKVSD-ISV-LAKLTNLESLIATNNQISD-----ITPLGI-LTNLDEL 225
Query: 453 MLHG-QLKR-GTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVX 510
L+G QLK GT ++L LDL+ N+++ P + GL++L+ L LG N + P+
Sbjct: 226 SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA 283
Query: 511 XXXXXXXXXXXXXXXXXHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQI 570
T L + N + P
Sbjct: 284 GLTAL----------------------TNLELNENQLEDISPISN--------------- 306
Query: 571 HENFEFTT---KNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNL 627
+N + T NI+ I L+ L L + NK+ + NLT I L+ HN +
Sbjct: 307 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKV--SDVSSLANLTNINWLSAGHNQI 364
Query: 628 TGLIPSTFSNLKHIESLDL 646
+ L P +NL I L L
Sbjct: 365 SDLTP--LANLTRITQLGL 381
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 156/348 (44%), Gaps = 40/348 (11%)
Query: 69 GLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 128
G+ L +L ++ NN L P L N+T L + +++NQ+ +PL +LT++ L
Sbjct: 62 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA---DITPLANLTNLTGL 116
Query: 129 MLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGD 188
L NN ++PL N + L + ++N I ++I+ LT+ LQ LS +G+
Sbjct: 117 TLFNNQI---TDIDPLKNLTNLNRLELSSNTI-SDISALSGLTS----LQQLS----FGN 164
Query: 189 GVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSH 248
VT K L + LE + +S N + +L T L L N+ ++ L I ++
Sbjct: 165 QVTDLKPLANLTTLERLDISS-NKVSDIS--VLAKLTNLESLIATNNQISDITPLGILTN 221
Query: 249 RWLRFLDVSNNNFQGHIPVEIGDI--LPSLISFNISMNALDSSIPSSFGNMNFLQILDLS 306
L L ++ N + +IG + L +L +++ N + + P + L L L
Sbjct: 222 --LDELSLNGNQLK-----DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 272
Query: 307 NNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQS 366
NQ++ P + NLE L+ N L+ S NL NL L L N++ P
Sbjct: 273 ANQISNISPLAGLTALTNLE---LNENQLED--ISPISNLKNLTYLTLYFNNISDISP-- 325
Query: 367 LSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG 414
+S + L+ L+ NN +S L NLT + + N + P+
Sbjct: 326 VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLTPLA 371
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 83/191 (43%), Gaps = 18/191 (9%)
Query: 325 LEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGN---HLEGEIPQSLSKCSSLEGLYLNNN 381
LE L L +N++ + F L+ L + N +L E SL + ++L L LN N
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL-SLNLNGN 189
Query: 382 SLSGKIPRWLG-------NLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGS 434
++G P N G +++++ +G L+ D+ D +IS +
Sbjct: 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVI---FKGLKNSTIQSLWLGTFEDMDDEDISPA 246
Query: 435 LPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHC-SSLVTLDLSYNRLNGSIPNWVDGLSQL 493
+ +S+E ++L K+ FHC S L LDL+ L +P+ + GLS L
Sbjct: 247 VFEGLCEMSVESINLQKHYFFN--ISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTL 303
Query: 494 SHLILGHNNLE 504
L+L N E
Sbjct: 304 KKLVLSANKFE 314
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 610 QIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGK 654
Q+ NL+ +Q+LNLS+N L F +E LDL++ +L K
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK 415
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 85/218 (38%), Gaps = 44/218 (20%)
Query: 317 HLAVSCVNLE---FLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSL 373
++V +NL+ F +S+N H FS L+ L L HL E+P L S+L
Sbjct: 253 EMSVESINLQKHYFFNISSNTF--HCFS------GLQELDLTATHL-SELPSGLVGLSTL 303
Query: 374 EGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQ-LYSLQILDISDNNIS 432
+ L L+ N N L H+ + N + G + L +L+ LD+S ++I
Sbjct: 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363
Query: 433 GSLPSCFHPLSIEQVHL-SKNMLHGQ---LKRGTFFHCSSLVTLDLSYNRL--------- 479
S C + HL S N+ + + LK F C L LDL++ RL
Sbjct: 364 TS--DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421
Query: 480 ----------------NGSIPNWVDGLSQLSHLILGHN 501
+ S DGL L HL L N
Sbjct: 422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 583 YIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIE 642
+ ++G S + DLS +K+ + + T ++ L L+ N + + + F L H+
Sbjct: 267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326
Query: 643 SLDLSYNKLNGKIPHQLVE-LKTLAVFSVAYNNLSG 677
L+LS N L G I ++ E L L V ++YN++
Sbjct: 327 KLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRA 361
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 84/372 (22%), Positives = 139/372 (37%), Gaps = 38/372 (10%)
Query: 45 MPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILD 104
+ L++L + T G +GL SL+ L+ +D N + +L +L
Sbjct: 53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK---LDYNQFLQLETGAFNGLANLEVLT 109
Query: 105 VSSNQLTGSISSSPLVH-LTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAE 163
++ L G++ S LTS+E L+L +N+ + N R + D N++K+
Sbjct: 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS- 168
Query: 164 ITESHSLTAPNFQLQALSLSS-------GYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEF 216
I E L L LSS Y G + + + LS
Sbjct: 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM 228
Query: 217 PNWLLEN--NTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQG--HIPVEIGDI 272
+ TK++ L L N G S F D N F+G V+ D+
Sbjct: 229 AKRFFDAIAGTKIQSLILSNSYNMGS------SFGHTNFKDPDNFTFKGLEASGVKTCDL 282
Query: 273 LPSLI---------------SFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEH 317
S I ++ N ++ ++F + L L+LS N L G I
Sbjct: 283 SKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSR 341
Query: 318 LAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLY 377
+ + LE L LS N+++ L NL+ L L+ N L+ + +SL+ ++
Sbjct: 342 MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIW 401
Query: 378 LNNNSLSGKIPR 389
L+ N PR
Sbjct: 402 LHTNPWDCSCPR 413
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 614 LTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYN 673
LT + LNLS N L + F NL +E LDLSYN + + L L ++ N
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381
Query: 674 NLSGEIPE 681
L +P+
Sbjct: 382 QLK-SVPD 388
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 2/111 (1%)
Query: 395 TGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLS-IEQVHLSKNM 453
+G+K + ++ + + F L+ L ++ N I+ + F L+ + +++LS+N
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334
Query: 454 LHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLE 504
L G + F + L LDLSYN + GL L L L N L+
Sbjct: 335 L-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 8/167 (4%)
Query: 274 PSLISF-NISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVN-LEFLALS 331
PS +F N + N S+ + LQ L L N L L ++ LE L +S
Sbjct: 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411
Query: 332 NNNLKGHMFSRNFNLT-NLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRW 390
N+L H + R ++ L L N L G + + L ++ L L+NN + IP+
Sbjct: 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIMS-IPKD 468
Query: 391 LGNLTGLKHIIMPENHLEGPIPVG-FCQLYSLQILDISDNNISGSLP 436
+ +L L+ + + N L+ +P G F +L SLQ + + DN + P
Sbjct: 469 VTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 59/138 (42%), Gaps = 13/138 (9%)
Query: 68 QGLCSLMHLQELYIDNNDLRGSLPWCL--ANMTSLRILDVSSNQLTGSISSSPLVHLTSI 125
QG +L LQ L + N L+ L NM+SL LDVS N L SI
Sbjct: 371 QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430
Query: 126 EELMLSNNHFQIPI--SLEPLFNHSRLKIFDAANNEIKA---EITESHSLTAPNFQLQAL 180
L LS+N + L P ++K+ D NN I + ++T +L N L
Sbjct: 431 LVLNLSSNMLTGSVFRCLPP-----KVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQL 485
Query: 181 -SLSSGYGDGVTFPKFLY 197
S+ G D +T ++++
Sbjct: 486 KSVPDGVFDRLTSLQYIW 503
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 563 MIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNL 622
M P ++ +++ +N+ ++ + + L LS N + P I L+ ++ L L
Sbjct: 25 MTPFSNELESMVDYSNRNLTHVPKD-LPPRTKALSLSQNSISELRMPDISFLSELRVLRL 83
Query: 623 SHNNLTGLIPSTFSNLKHIESLDLSYNKL 651
SHN + L F + +E LD+S+N+L
Sbjct: 84 SHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 79/190 (41%), Gaps = 4/190 (2%)
Query: 243 LPIHSHRWLRFLDVS--NNNFQGHIPVEIGDILPSLISFNISMNA-LDSSIPSSFGNMNF 299
+P S R R L + ++N I L L ++S NA L S P++F +
Sbjct: 46 VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 105
Query: 300 LQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHL 359
L L L L E+ L L++L L +N L+ +L NL L L GN +
Sbjct: 106 LHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 164
Query: 360 EGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLY 419
++ SL+ L L+ N ++ P +L L + + N+L L
Sbjct: 165 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 224
Query: 420 SLQILDISDN 429
+LQ L ++DN
Sbjct: 225 ALQYLRLNDN 234
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 70/162 (43%), Gaps = 11/162 (6%)
Query: 288 SSIPS-SFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFN- 345
S +P+ SF L IL L +N L I LE L LS+N + F+
Sbjct: 44 SHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG 102
Query: 346 LTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIP----RWLGNLTGLKHII 401
L L +L L+ L+ P ++L+ LYL +N+L +P R LGNLT H+
Sbjct: 103 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLT---HLF 158
Query: 402 MPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLS 443
+ N + F L+SL L + N ++ P F L
Sbjct: 159 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 200
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Query: 69 GLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 128
GL L L+ LY+ NN + L+ +T L L + NQ++ + PL LT ++ L
Sbjct: 124 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLACLTKLQNL 178
Query: 129 MLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPN 174
LS NH +L L N L++F + + I +L PN
Sbjct: 179 YLSKNHISDLRALCGLKNLDVLELF--SQEALNKPINHQSNLVVPN 222
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 79/190 (41%), Gaps = 4/190 (2%)
Query: 243 LPIHSHRWLRFLDVS--NNNFQGHIPVEIGDILPSLISFNISMNA-LDSSIPSSFGNMNF 299
+P S R R L + ++N I L L ++S NA L S P++F +
Sbjct: 47 VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106
Query: 300 LQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHL 359
L L L L E+ L L++L L +N L+ +L NL L L GN +
Sbjct: 107 LHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165
Query: 360 EGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLY 419
++ SL+ L L+ N ++ P +L L + + N+L L
Sbjct: 166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225
Query: 420 SLQILDISDN 429
+LQ L ++DN
Sbjct: 226 ALQYLRLNDN 235
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 70/162 (43%), Gaps = 11/162 (6%)
Query: 288 SSIPS-SFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFN- 345
S +P+ SF L IL L +N L I LE L LS+N + F+
Sbjct: 45 SHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG 103
Query: 346 LTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIP----RWLGNLTGLKHII 401
L L +L L+ L+ P ++L+ LYL +N+L +P R LGNLT H+
Sbjct: 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLT---HLF 159
Query: 402 MPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLS 443
+ N + F L+SL L + N ++ P F L
Sbjct: 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 36.2 bits (82), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 611 IGNLTRIQTLNLSHNNLTGL-IPSTFSNLKHIESLDLSYNKLNG 653
IG+L ++ LN++HN + +P FSNL ++E LDLS NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 44 SMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRIL 103
S P L+ L +S + T I D SL HL L + N ++ + ++SL+ L
Sbjct: 50 SFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105
Query: 104 DVSSNQLTGSISSSPLVHLTSIEELMLSNN---HFQIPISLEPLFNHSRLKIFDAANNEI 160
L S+ + P+ HL +++EL +++N F++P E N + L+ D ++N+I
Sbjct: 106 VAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLP---EYFSNLTNLEHLDLSSNKI 161
Query: 161 KA 162
++
Sbjct: 162 QS 163
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 105/231 (45%), Gaps = 9/231 (3%)
Query: 268 EIGDILP-SLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLE 326
+I D LP S + ++S N L SF + LQ+LDLS ++ I + S +L
Sbjct: 21 KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLS 79
Query: 327 FLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSL-SG 385
L L+ N ++ L++L+ L +L + +L+ L + +N + S
Sbjct: 80 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139
Query: 386 KIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSL----PSCFHP 441
K+P + NLT L+H+ + N ++ L+ + +L++S + + P F
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199
Query: 442 LSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQ 492
+ ++++ L N L + G F +SL + L N + S P +D LS+
Sbjct: 200 IRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR-IDYLSR 248
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 611 IGNLTRIQTLNLSHNNLTGL-IPSTFSNLKHIESLDLSYNKLN 652
IG+L ++ LN++HN + +P FSNL ++E LDLS NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 44 SMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRIL 103
S P L+ L +S + T I D SL HL L + N ++ + ++SL+ L
Sbjct: 52 SFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 107
Query: 104 DVSSNQLTGSISSSPLVHLTSIEELMLSNN---HFQIPISLEPLFNHSRLKIFDAANNEI 160
L S+ + P+ HL +++EL +++N F++P E N + L+ D ++N+I
Sbjct: 108 VAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLP---EYFSNLTNLEHLDLSSNKI 163
Query: 161 KA 162
++
Sbjct: 164 QS 165
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 105/231 (45%), Gaps = 9/231 (3%)
Query: 268 EIGDILP-SLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLE 326
+I D LP S + ++S N L SF + LQ+LDLS ++ I + S +L
Sbjct: 23 KIPDNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLS 81
Query: 327 FLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSL-SG 385
L L+ N ++ L++L+ L +L + +L+ L + +N + S
Sbjct: 82 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 141
Query: 386 KIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSL----PSCFHP 441
K+P + NLT L+H+ + N ++ L+ + +L++S + + P F
Sbjct: 142 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 201
Query: 442 LSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQ 492
+ ++++ L N L + G F +SL + L N + S P +D LS+
Sbjct: 202 IRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR-IDYLSR 250
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 611 IGNLTRIQTLNLSHNNLTGL-IPSTFSNLKHIESLDLSYNKL 651
IG+L ++ LN++HN + +P FSNL ++E LDLS NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 44 SMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRIL 103
S P L+ L +S + T I D SL HL L + N ++ + ++SL+ L
Sbjct: 51 SFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 106
Query: 104 DVSSNQLTGSISSSPLVHLTSIEELMLSNN---HFQIPISLEPLFNHSRLKIFDAANNEI 160
L S+ + P+ HL +++EL +++N F++P E N + L+ D ++N+I
Sbjct: 107 VAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLP---EYFSNLTNLEHLDLSSNKI 162
Query: 161 KA 162
++
Sbjct: 163 QS 164
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 105/231 (45%), Gaps = 9/231 (3%)
Query: 268 EIGDILP-SLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLE 326
+I D LP S + ++S N L SF + LQ+LDLS ++ I + S +L
Sbjct: 22 KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLS 80
Query: 327 FLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSL-SG 385
L L+ N ++ L++L+ L +L + +L+ L + +N + S
Sbjct: 81 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 140
Query: 386 KIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSL----PSCFHP 441
K+P + NLT L+H+ + N ++ L+ + +L++S + + P F
Sbjct: 141 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 200
Query: 442 LSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQ 492
+ ++++ L N L + G F +SL + L N + S P +D LS+
Sbjct: 201 IRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR-IDYLSR 249
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 611 IGNLTRIQTLNLSHNNLTGL-IPSTFSNLKHIESLDLSYNKLN 652
IG+L ++ LN++HN + +P FSNL ++E LDLS NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 44 SMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRIL 103
S P L+ L +S + T I D SL HL L + N ++ + ++SL+ L
Sbjct: 52 SFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 107
Query: 104 DVSSNQLTGSISSSPLVHLTSIEELMLSNN---HFQIPISLEPLFNHSRLKIFDAANNEI 160
L S+ + P+ HL +++EL +++N F++P E N + L+ D ++N+I
Sbjct: 108 VALETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLP---EYFSNLTNLEHLDLSSNKI 163
Query: 161 KA 162
++
Sbjct: 164 QS 165
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 105/231 (45%), Gaps = 9/231 (3%)
Query: 268 EIGDILP-SLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLE 326
+I D LP S + ++S N L SF + LQ+LDLS ++ I + S +L
Sbjct: 23 KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLS 81
Query: 327 FLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSL-SG 385
L L+ N ++ L++L+ L +L + +L+ L + +N + S
Sbjct: 82 TLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSF 141
Query: 386 KIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSL----PSCFHP 441
K+P + NLT L+H+ + N ++ L+ + +L++S + + P F
Sbjct: 142 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 201
Query: 442 LSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQ 492
+ ++++ L N L + G F +SL + L N + S P +D LS+
Sbjct: 202 IRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR-IDYLSR 250
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 611 IGNLTRIQTLNLSHNNLTGL-IPSTFSNLKHIESLDLSYNKL 651
IG+L ++ LN++HN + +P FSNL ++E LDLS NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 44 SMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRIL 103
S P L+ L +S + T I D SL HL L + N ++ + ++SL+ L
Sbjct: 51 SFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 106
Query: 104 DVSSNQLTGSISSSPLVHLTSIEELMLSNN---HFQIPISLEPLFNHSRLKIFDAANNEI 160
L S+ + P+ HL +++EL +++N F++P E N + L+ D ++N+I
Sbjct: 107 VAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLP---EYFSNLTNLEHLDLSSNKI 162
Query: 161 KA 162
++
Sbjct: 163 QS 164
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 105/231 (45%), Gaps = 9/231 (3%)
Query: 268 EIGDILP-SLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLE 326
+I D LP S + ++S N L SF + LQ+LDLS ++ I + S +L
Sbjct: 22 KIPDNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLS 80
Query: 327 FLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSL-SG 385
L L+ N ++ L++L+ L +L + +L+ L + +N + S
Sbjct: 81 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 140
Query: 386 KIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSL----PSCFHP 441
K+P + NLT L+H+ + N ++ L+ + +L++S + + P F
Sbjct: 141 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 200
Query: 442 LSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQ 492
+ ++++ L N L + G F +SL + L N + S P +D LS+
Sbjct: 201 IRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR-IDYLSR 249
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 35.8 bits (81), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%)
Query: 612 GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVA 671
G L + L L N LTG+ P+ F HI+ L L NK+ + L L ++
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110
Query: 672 YNNLSGEIPEWTAQFATFNESSYEGNTFLC 701
N +S +P + + N F C
Sbjct: 111 DNQISCVMPGSFEHLNSLTSLNLASNPFNC 140
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%)
Query: 441 PLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGH 500
PL ++ L+ N L G F LV L+L N+L G PN +G S + L LG
Sbjct: 28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87
Query: 501 NNLE 504
N ++
Sbjct: 88 NKIK 91
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 294 FGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQ 353
FG + L L+L NQLTG P + +++ L L N +K L L++L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGA-SHIQELQLGENKIKEISNKMFLGLHQLKTLN 108
Query: 354 LEGNHLEGEIPQSLSKCSSLEGLYLNNN 381
L N + +P S +SL L L +N
Sbjct: 109 LYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 424 LDISDNNISGSLP-SCFHPL-SIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNG 481
LD+ N++ SLP F L S+ Q++L N L L G F +SL L+LS N+L
Sbjct: 33 LDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ- 89
Query: 482 SIPNWV-DGLSQLSHLILGHNNLE 504
S+PN V D L+QL L L N L+
Sbjct: 90 SLPNGVFDKLTQLKELALNTNQLQ 113
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 42 RESMPSLKYLSMSDSTLGTNSSRILDQGLCS-LMHLQELYIDNNDLRGSLPWCLAN-MTS 99
R S+P+ + L TNS + L G+ L L +LY+ N L+ SLP + N +TS
Sbjct: 19 RTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTS 77
Query: 100 LRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQ 136
L L++S+NQL S+ + LT ++EL L+ N Q
Sbjct: 78 LTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ 113
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 58/135 (42%), Gaps = 3/135 (2%)
Query: 303 LDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGE 362
LDL N L +P + +L L L N L+ LT+L L L N L+
Sbjct: 33 LDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 363 IPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG-FCQLYSL 421
K + L+ L LN N L LT LK + + +N L+ +P G F +L SL
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSL 150
Query: 422 QILDISDNNISGSLP 436
Q + + DN + P
Sbjct: 151 QYIWLHDNPWDCTCP 165
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 7/114 (6%)
Query: 273 LPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSN 332
L L N+ N L + F ++ L L L+NNQL +P + L+ L L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGG 116
Query: 333 NNLK---GHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSL 383
N LK +F R LT L+ L+L N L+ + K ++L+ L L+ N L
Sbjct: 117 NQLKSLPSGVFDR---LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 614 LTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPH----QLVELKTLAVFS 669
LT+++ L L+ N L + F L ++++L LS N+L +PH +L +L+T+ +F
Sbjct: 130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFG 188
Query: 670 VAYNNLSGEI 679
++ EI
Sbjct: 189 NQFDCSRCEI 198
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 73 LMHLQELYIDNNDLRGSLP-WCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLS 131
L L +LY+ N L+ SLP +T L+ L +++NQL SI + LT+++ L LS
Sbjct: 106 LTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLS 163
Query: 132 NNHFQ 136
N Q
Sbjct: 164 TNQLQ 168
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 66/169 (39%), Gaps = 6/169 (3%)
Query: 271 DILPSLI-----SFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNL 325
D +PS I ++ L + ++F + L L+L NQL + + L
Sbjct: 27 DSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTEL 85
Query: 326 EFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSG 385
L L+NN L +LT L L L GN L+ + + L+ L LN N L
Sbjct: 86 GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS 145
Query: 386 KIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGS 434
LT L+ + + N L+ F +L LQ + + N S
Sbjct: 146 IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 7/114 (6%)
Query: 273 LPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSN 332
L L N+ N L + F ++ L L L+NNQL +P + L+ L L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGG 116
Query: 333 NNLK---GHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSL 383
N LK +F R LT L+ L+L N L+ + K ++L+ L L+ N L
Sbjct: 117 NQLKSLPSGVFDR---LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 73 LMHLQELYIDNNDLRGSLP-WCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLS 131
L L +LY+ N L+ SLP +T L+ L +++NQL SI + LT+++ L LS
Sbjct: 106 LTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLS 163
Query: 132 NNHFQ 136
N Q
Sbjct: 164 TNQLQ 168
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 614 LTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPH----QLVELKTLAVFS 669
LT+++ L L+ N L + F L ++++L LS N+L +PH +L +L+T+ +F
Sbjct: 130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFG 188
Query: 670 VAYN 673
++
Sbjct: 189 NQFD 192
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 66/169 (39%), Gaps = 6/169 (3%)
Query: 271 DILPSLI-----SFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNL 325
D +PS I ++ L + ++F + L L+L NQL + + L
Sbjct: 27 DSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTEL 85
Query: 326 EFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSG 385
L L+NN L +LT L L L GN L+ + + L+ L LN N L
Sbjct: 86 GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS 145
Query: 386 KIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGS 434
LT L+ + + N L+ F +L LQ + + N S
Sbjct: 146 IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 57/101 (56%), Gaps = 6/101 (5%)
Query: 579 KNIAYIYQGKV--LSLLSGLDLS-CNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTF 635
K ++YI +G LS L L+L+ CN + IP + L ++ L+LS N+L+ + P +F
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNLAMCN--LREIP-NLTPLIKLDELDLSGNHLSAIRPGSF 227
Query: 636 SNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLS 676
L H++ L + +++ + L++L ++A+NNL+
Sbjct: 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 96/208 (46%), Gaps = 10/208 (4%)
Query: 249 RWLRFLDVSNNNFQGHIPVEIGDI--LPSLISFNISMNALDSSIPSSFGNMNFLQILDLS 306
R L L +S N+ + +EIG L +L + + N L + +F ++ L+ L L
Sbjct: 88 RHLEILQLSRNHIRT---IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144
Query: 307 NNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNF-NLTNLRSLQLEGNHLEGEIPQ 365
NN + IP + +L L L ++ F L+NLR L L +L EIP
Sbjct: 145 NNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP- 201
Query: 366 SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILD 425
+L+ L+ L L+ N LS P L L+ + M ++ ++ F L SL ++
Sbjct: 202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN 261
Query: 426 ISDNNISGSLPSCFHPL-SIEQVHLSKN 452
++ NN++ F PL +E++HL N
Sbjct: 262 LAHNNLTLLPHDLFTPLHHLERIHLHHN 289
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 613 NLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 652
NL + +NL+HNNLT L F+ L H+E + L +N N
Sbjct: 253 NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 86/207 (41%), Gaps = 10/207 (4%)
Query: 227 LRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPS-LISFNISMNA 285
L L LVN+ ++ R L+ L +S N+ VEI LPS L+ I N
Sbjct: 80 LYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL-----VEIPPNLPSSLVELRIHDNR 134
Query: 286 LDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFN 345
+ F + + +++ N L E A + L +L +S L G ++
Sbjct: 135 IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG--IPKDLP 192
Query: 346 LTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPEN 405
T L L L+ N ++ + L + S L L L +N + L L L+ + + N
Sbjct: 193 ET-LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN 251
Query: 406 HLEGPIPVGFCQLYSLQILDISDNNIS 432
L +P G L LQ++ + NNI+
Sbjct: 252 KLSR-VPAGLPDLKLLQVVYLHTNNIT 277
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 90/197 (45%), Gaps = 17/197 (8%)
Query: 226 KLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNA 285
KL++LY+ + L +P + L L + +N + +P + L ++ + N
Sbjct: 103 KLQKLYISKNHLV---EIPPNLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNP 158
Query: 286 LDSS--IPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRN 343
L++S P +F + L L +S +LTG IP+ L + L L L +N ++
Sbjct: 159 LENSGFEPGAFDGLK-LNYLRISEAKLTG-IPKDLPET---LNELHLDHNKIQAIELEDL 213
Query: 344 FNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMP 403
+ L L L N + SLS +L L+L+NN LS ++P L +L L+ + +
Sbjct: 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH 272
Query: 404 ENHLEGP-----IPVGF 415
N++ PVGF
Sbjct: 273 TNNITKVGVNDFCPVGF 289
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 5/139 (3%)
Query: 298 NFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGN 357
++ +LDLS+N L+ E NL L LS+N+L + NLR L L N
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98
Query: 358 HLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFC- 416
HL S +LE L L NN + ++ L+ + + +N + PV
Sbjct: 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIK 157
Query: 417 ---QLYSLQILDISDNNIS 432
+L L +LD+S N +
Sbjct: 158 DGNKLPKLMLLDLSSNKLK 176
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 363 IPQSLSKCSSLEGLYLNNNSLSGKIPRWL-GNLTGLKHIIMPENHLEGPIPVGFCQLYSL 421
+PQSL ++L L L++N+LS W LT L +++ NHL F + +L
Sbjct: 33 VPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL 90
Query: 422 QILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLN 480
+ LD+S N++ F L +V L N + R F + L L LS N+++
Sbjct: 91 RYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 81/191 (42%), Gaps = 11/191 (5%)
Query: 276 LISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVS--------CVNLEF 327
L + ++ N L ++P+S ++N L+ L + E+PE LA + VNL+
Sbjct: 129 LETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187
Query: 328 LALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKI 387
L L ++ + + NL NL+SL++ + L P ++ LE L L +
Sbjct: 188 LRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNY 245
Query: 388 PRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQV 447
P G LK +I+ + +P+ +L L+ LD+ LPS L +
Sbjct: 246 PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305
Query: 448 HLSKNMLHGQL 458
L L QL
Sbjct: 306 ILVPPHLQAQL 316
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 82/192 (42%), Gaps = 4/192 (2%)
Query: 314 IPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSL 373
+P + S LE + +L +F + LT L SL G +G QS +SL
Sbjct: 22 VPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKL-SLSSNGLSFKGCCSQSDFGTTSL 80
Query: 374 EGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG-FCQLYSLQILDISDNNIS 432
+ L L+ N + +LG L L+H+ ++L+ F L +L LDIS +
Sbjct: 81 KYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 139
Query: 433 GSLPSCFHPLS-IEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLS 491
+ F+ LS +E + ++ N F +L LDLS +L P + LS
Sbjct: 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 199
Query: 492 QLSHLILGHNNL 503
L L + HNN
Sbjct: 200 SLQVLNMSHNNF 211
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 593 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 652
L+ LDLS +L P +L+ +Q LN+SHNN L + L ++ LD S N +
Sbjct: 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236
Query: 653 GKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPA 712
+L + S+A+ NL+ T + +F + + L + C +P+
Sbjct: 237 TSKKQELQHFPS----SLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 35/58 (60%)
Query: 251 LRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNN 308
L L ++ N+FQ + +I L +L ++S L+ P++F +++ LQ+L++S+N
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 3/118 (2%)
Query: 249 RWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNN 308
R L FLD+S + P L SL N+S N S + +N LQ+LD S N
Sbjct: 175 RNLTFLDLSQCQLEQLSPTAFNS-LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233
Query: 309 QLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFN--LTNLRSLQLEGNHLEGEIP 364
+ + L +L FL L+ N+ ++F + + R L +E +E P
Sbjct: 234 HIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP 291
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 94 LANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIF 153
LA +++L++L + NQ+T + SPL LT+++ L + NN L PL N S+L
Sbjct: 131 LAGLSNLQVLYLDLNQIT---NISPLAGLTNLQYLSIGNNQVN---DLTPLANLSKLTTL 184
Query: 154 DAANNEI 160
A +N+I
Sbjct: 185 RADDNKI 191
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 54/130 (41%), Gaps = 25/130 (19%)
Query: 345 NLTNLRSLQLEGNHLEG------------------EIPQ--SLSKCSSLEGLYLNNNSLS 384
NLT + L+L GN L+ +I L+ S+L+ LYL+ N ++
Sbjct: 89 NLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQIT 148
Query: 385 GKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSI 444
P L LT L+++ + N + P L L L DN IS P P I
Sbjct: 149 NISP--LAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKISDISPLASLPNLI 204
Query: 445 EQVHLSKNML 454
E VHL N +
Sbjct: 205 E-VHLKDNQI 213
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 103/226 (45%), Gaps = 43/226 (19%)
Query: 290 IPSSFGN-MNFLQILDLSNNQLTGEIPEHLAVSCV--NLEFLALSNNNLKGHMFSRNFNL 346
+P SF + L+ LDLS N + E ++ A +L+ L LS N+L+ + L
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384
Query: 347 T--NLRSLQLEGNHLEGEIPQSLSKCSSLEGL-YLNNNSLSGKIPRWLGNLTGLKHIIMP 403
T NL SL + N +P S C E + +LN +S TG++
Sbjct: 385 TLKNLTSLDISRNTFH-PMPDS---CQWPEKMRFLNLSS------------TGIR----- 423
Query: 404 ENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTF 463
V C +L++LD+S+NN+ S F P ++++++S+N L L +
Sbjct: 424 --------VVKTCIPQTLEVLDVSNNNLDSF--SLFLP-RLQELYISRNKLK-TLPDASL 471
Query: 464 FHCSSLVTLDLSYNRLNGSIPNWV-DGLSQLSHLILGHNNLEGEVP 508
F L+ + +S N+L S+P+ + D L+ L + L N + P
Sbjct: 472 FPV--LLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 514
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 27/113 (23%)
Query: 288 SSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLT 347
+SIPS G ++ LDLS N++T I +C NL+ L L ++ +
Sbjct: 18 TSIPS--GLTAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRI------------ 62
Query: 348 NLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHI 400
N +EG+ SL SLE L L++N LS W G L+ LK++
Sbjct: 63 ---------NTIEGDAFYSLG---SLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 13/97 (13%)
Query: 412 PVGFCQLYS-----LQILDISDNNI--SGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFF 464
P G C + LQ LD+S N++ + PSC P + ++LS L Q+ +G
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP- 273
Query: 465 HCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHN 501
+ L LDLSYNRL+ + P+ D L Q+ +L L N
Sbjct: 274 --AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGN 306
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 596 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN--- 652
LDL NK+ NL + TL L +N ++ + P F+ L +E L LS N+L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 653 GKIPHQLVELKT 664
K+P L EL+
Sbjct: 117 EKMPKTLQELRV 128
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 97/237 (40%), Gaps = 31/237 (13%)
Query: 201 DLEDVRLSHVNMDGEFPNW------LLENN-------------TKLRQLYLVNDSLTGPF 241
DL++ +++ + DG+F N +L NN KL +LYL + L
Sbjct: 58 DLQNNKITEIK-DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK--- 113
Query: 242 RLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSS--IPSSFGNMNF 299
LP + L+ L V N + + + L +I + N L SS +F M
Sbjct: 114 ELPEKMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 300 LQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHL 359
L + +++ +T IP+ L S L L L N + + L NL L L N +
Sbjct: 173 LSYIRIADTNIT-TIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228
Query: 360 EGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFC 416
SL+ L L+LNNN L K+P L + ++ + + N++ FC
Sbjct: 229 SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 590 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN 649
L ++ DL K+ +PP L+L +N +T + F NLK++ +L L N
Sbjct: 33 LRVVQCSDLGLEKVPKDLPPDTA------LLDLQNNKITEIKDGDFKNLKNLHTLILINN 86
Query: 650 KLNGKIPHQLVELKTLAVFSVAYNNLSGEIPE 681
K++ P L L ++ N L E+PE
Sbjct: 87 KISKISPGAFAPLVKLERLYLSKNQLK-ELPE 117
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 596 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN--- 652
LDL NK+ NL + TL L +N ++ + P F+ L +E L LS N+L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 653 GKIPHQLVELKT 664
K+P L EL+
Sbjct: 117 EKMPKTLQELRV 128
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 97/237 (40%), Gaps = 31/237 (13%)
Query: 201 DLEDVRLSHVNMDGEFPNW------LLENN-------------TKLRQLYLVNDSLTGPF 241
DL++ +++ + DG+F N +L NN KL +LYL + L
Sbjct: 58 DLQNNKITEIK-DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK--- 113
Query: 242 RLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSS--IPSSFGNMNF 299
LP + L+ L V N + + + L +I + N L SS +F M
Sbjct: 114 ELPEKMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 300 LQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHL 359
L + +++ +T IP+ L S L L L N + + L NL L L N +
Sbjct: 173 LSYIRIADTNIT-TIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228
Query: 360 EGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFC 416
SL+ L L+LNNN L K+P L + ++ + + N++ FC
Sbjct: 229 SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 590 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN 649
L ++ DL K+ +PP L+L +N +T + F NLK++ +L L N
Sbjct: 33 LRVVQCSDLGLEKVPKDLPPDTA------LLDLQNNKITEIKDGDFKNLKNLHTLILINN 86
Query: 650 KLNGKIPHQLVELKTLAVFSVAYNNLSGEIPE 681
K++ P L L ++ N L E+PE
Sbjct: 87 KISKISPGAFAPLVKLERLYLSKNQLK-ELPE 117
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 65/152 (42%), Gaps = 3/152 (1%)
Query: 354 LEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPEN-HLEGPIP 412
L GN + S C +L L+L++N+L+G LT L+ + + +N L P
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDP 97
Query: 413 VGFCQLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLHGQLKRGTFFHCSSLVT 471
F L L L + + P F L +++ ++L N L L TF +L
Sbjct: 98 TTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQA-LPDNTFRDLGNLTH 156
Query: 472 LDLSYNRLNGSIPNWVDGLSQLSHLILGHNNL 503
L L NR+ + GL L L+L N++
Sbjct: 157 LFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHV 188
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 73/162 (45%), Gaps = 11/162 (6%)
Query: 288 SSIPS-SFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFN- 345
S +P+ SF + L IL L +N L G I LE L LS+N + F
Sbjct: 44 SYVPAASFQSCRNLTILWLHSNALAG-IDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRG 102
Query: 346 LTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIP----RWLGNLTGLKHII 401
L +L +L L+ L+ P ++L+ LYL +N+L +P R LGNLT H+
Sbjct: 103 LGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQA-LPDNTFRDLGNLT---HLF 158
Query: 402 MPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLS 443
+ N + F L+SL L + N+++ P F L
Sbjct: 159 LHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLG 200
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 60/149 (40%)
Query: 284 NALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRN 343
NAL ++F + L+ LDLS+N + +L L L L+
Sbjct: 65 NALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLF 124
Query: 344 FNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMP 403
L L+ L L+ N+L+ + +L L+L+ N + L L +++
Sbjct: 125 RGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLH 184
Query: 404 ENHLEGPIPVGFCQLYSLQILDISDNNIS 432
+NH+ P F L L L + NN+S
Sbjct: 185 QNHVARVHPHAFRDLGRLMTLYLFANNLS 213
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 66/152 (43%), Gaps = 2/152 (1%)
Query: 349 LRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLE 408
++SL L N + L +C +L+ L L +N ++ +L L+H+ + N+L
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 409 GPIPVGFCQLYSLQILDISDNNISG-SLPSCFHPLSIEQVHLSKNM-LHGQLKRGTFFHC 466
F L SL L++ N S F L+ Q+ NM +++R F
Sbjct: 88 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 147
Query: 467 SSLVTLDLSYNRLNGSIPNWVDGLSQLSHLIL 498
+ L L++ + L P + + +SHLIL
Sbjct: 148 TFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 179
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 593 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 652
+ LDLS N++ + +Q L L+ N + + +FS+L +E LDLSYN L+
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 66/152 (43%), Gaps = 2/152 (1%)
Query: 349 LRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLE 408
++SL L N + L +C +L+ L L +N ++ +L L+H+ + N+L
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 409 GPIPVGFCQLYSLQILDISDNNISG-SLPSCFHPLSIEQVHLSKNM-LHGQLKRGTFFHC 466
F L SL L++ N S F L+ Q+ NM +++R F
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 173
Query: 467 SSLVTLDLSYNRLNGSIPNWVDGLSQLSHLIL 498
+ L L++ + L P + + +SHLIL
Sbjct: 174 TFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 593 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 652
+ LDLS N++ + +Q L L+ N + + +FS+L +E LDLSYN L+
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 24/110 (21%)
Query: 70 LCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT-----GSISS-------- 116
L +L + EL + N L+ +A + S++ LD++S Q+T +S+
Sbjct: 81 LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL 138
Query: 117 ------SPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEI 160
SPL LT+++ L + N L PL N S+L A +N+I
Sbjct: 139 NQITNISPLAGLTNLQYLSIGNAQVS---DLTPLANLSKLTTLKADDNKI 185
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 13/105 (12%)
Query: 280 NISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIP---EHLAVSCVNLEFLALSNNNLK 336
NI + ++ + IP+ Q L L+NNQ+T P +HL VNL+ L ++N L
Sbjct: 21 NIRLASVPAGIPTD------KQRLWLNNNQITKLEPGVFDHL----VNLQQLYFNSNKLT 70
Query: 337 GHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNN 381
LT L L L NHL+ + SL +YL NN
Sbjct: 71 AIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 422 QILDISDNNISGSLPSCF-HPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLN 480
Q L +++N I+ P F H ++++Q++ + N L + G F + L LDL+ N L
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLK 94
Query: 481 GSIPNWV-DGLSQLSHLILGHNNLEGEV 507
SIP D L L+H+ L +N + E
Sbjct: 95 -SIPRGAFDNLKSLTHIYLYNNPWDCEC 121
>pdb|2FK5|A Chain A, Crystal Structure Of L-Fuculose-1-Phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FK5|B Chain B, Crystal Structure Of L-Fuculose-1-Phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FLF|A Chain A, Crystal Structure Of L-fuculose-1-phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FLF|B Chain B, Crystal Structure Of L-fuculose-1-phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FLF|C Chain C, Crystal Structure Of L-fuculose-1-phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FLF|D Chain D, Crystal Structure Of L-fuculose-1-phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FLF|E Chain E, Crystal Structure Of L-fuculose-1-phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FLF|F Chain F, Crystal Structure Of L-fuculose-1-phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FLF|G Chain G, Crystal Structure Of L-fuculose-1-phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FLF|H Chain H, Crystal Structure Of L-fuculose-1-phosphate Aldolase From
Thermus Thermophilus Hb8
Length = 200
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 304 DLSNNQLTGEIPEHLAV-SCVNLEFLALSNNNLKGHMFSR-----NFNLTNLRSLQLEGN 357
DL L G IPE +V S V+ E + H R +F+L+ LR L LEG
Sbjct: 53 DLLEVPLEGPIPEGASVESVVHREVYRRTGARALVHAHPRVAVALSFHLSRLRPLDLEGQ 112
Query: 358 HLEGEIP 364
H E+P
Sbjct: 113 HYLKEVP 119
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 4/120 (3%)
Query: 271 DILPSLISFNISMNALDSSIPSSF-GNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLA 329
D L L F + L + IP++ +M L L+L N E+P HL NLE +
Sbjct: 120 DRLHGLKRFRFTTRRL-THIPANLLTDMRNLSHLELRAN--IEEMPSHLFDDLENLESIE 176
Query: 330 LSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPR 389
+N L+ + L+ L L N L+ + +SL+ ++L+ N PR
Sbjct: 177 FGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 236
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 34/69 (49%)
Query: 583 YIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIE 642
+ ++G S + DLS +K+ + + T ++ L L+ N + + + F L H++
Sbjct: 267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLK 326
Query: 643 SLDLSYNKL 651
L L N+L
Sbjct: 327 ELALDTNQL 335
>pdb|2LCQ|A Chain A, Solution Structure Of The Endonuclease Nob1 From
P.Horikoshii
Length = 165
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 4/42 (9%)
Query: 311 TGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSL 352
TGE+ E +S ++E LAL+ LKG +FS ++N+ N+ SL
Sbjct: 76 TGEVNE---LSKADIEVLALAYE-LKGEIFSDDYNVQNIASL 113
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 27/113 (23%)
Query: 288 SSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLT 347
+SIPS G ++ LDLS N++T I +C NL+ L L ++ +
Sbjct: 44 TSIPS--GLTAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRI------------ 88
Query: 348 NLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHI 400
N +EG+ SL SLE L L++N LS W G L+ LK++
Sbjct: 89 ---------NTIEGDAFYSLG---SLEHLDLSDNHLSSLSSSWFGPLSSLKYL 129
>pdb|3DKT|A Chain A, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|B Chain B, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|C Chain C, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|D Chain D, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|E Chain E, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|F Chain F, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|G Chain G, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|H Chain H, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|I Chain I, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|J Chain J, Crystal Structure Of Thermotoga Maritima Encapsulin
Length = 265
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 214 GEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVE 268
G P LLE + ++ D + GP+ L I++ RW+ FL GH P+E
Sbjct: 142 GSTPKDLLEAIVRALSIF-SKDGIEGPYTLVINTDRWINFL----KEEAGHYPLE 191
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 594 SGLDLSCN-KLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKL 651
SG + C+ K + +P G T Q L L N +T L P F L + LDL N+L
Sbjct: 18 SGTTVDCSGKSLASVP--TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL 74
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 594 SGLDLSCN-KLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKL 651
SG + C+ K + +P G T Q L L N +T L P F L + LDL N+L
Sbjct: 10 SGTTVDCSGKSLASVP--TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL 66
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 594 SGLDLSCN-KLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKL 651
SG + C+ K + +P G T Q L L N +T L P F L + LDL N+L
Sbjct: 10 SGTTVDCSGKSLASVP--TGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQL 66
>pdb|2R0B|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase-like
Serine/threonine/tyrosine-interacting Protein
Length = 154
Score = 30.0 bits (66), Expect = 5.8, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 373 LEGLYLN--NNSLSGKIPRWLGNLTGLKHIIMPENHLEGP-IPVGFCQLYSLQILDISDN 429
L GL+L ++++ K+P + G+ HII ++E I F QL+ +LDI+DN
Sbjct: 10 LPGLFLGPYSSAMKSKLP--VLQKHGITHIICIRQNIEANFIKPNFQQLFRYLVLDIADN 67
Query: 430 NISGSLPSCFHPLSIEQVHLSKNM 453
+ + F P++ E + S M
Sbjct: 68 PVENIIR--FFPMTKEFIDGSLQM 89
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 67/137 (48%), Gaps = 21/137 (15%)
Query: 32 ALNTSFLQIIRE--SMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGS 89
AL+T+ ++ I M +L+ LS LG N + ++ L+EL+I N + S
Sbjct: 54 ALSTNNIEKISSLSGMENLRILS-----LGRNLIKKIENLDAVADTLEELWISYNQI-AS 107
Query: 90 LPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSR 149
L + + +LR+L +S+N++T L L +E+L+L+ N PL+N +
Sbjct: 108 LSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN---------PLYNDYK 157
Query: 150 LKIFDAANNEIKAEITE 166
+ A +E + E+ +
Sbjct: 158 E---NNATSEYRIEVVK 171
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 29.6 bits (65), Expect = 7.0, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 67/137 (48%), Gaps = 21/137 (15%)
Query: 32 ALNTSFLQIIRE--SMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGS 89
AL+T+ ++ I M +L+ LS LG N + ++ L+EL+I N + S
Sbjct: 55 ALSTNNIEKISSLSGMENLRILS-----LGRNLIKKIENLDAVADTLEELWISYNQI-AS 108
Query: 90 LPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSR 149
L + + +LR+L +S+N++T L L +E+L+L+ N PL+N +
Sbjct: 109 LSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN---------PLYNDYK 158
Query: 150 LKIFDAANNEIKAEITE 166
+ A +E + E+ +
Sbjct: 159 E---NNATSEYRIEVVK 172
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 110/278 (39%), Gaps = 67/278 (24%)
Query: 216 FPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPS 275
P + +N L L L + L+ R H+ L L +SNNN + I + S
Sbjct: 108 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTS 166
Query: 276 LISFNISMNALD----SSIPSSF-GNMNF-----------LQILDLSNNQLTGEIPEHLA 319
L + +S N L S IPS F N+++ ++ LD S+N + ++
Sbjct: 167 LQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI------NVV 220
Query: 320 VSCVNLEF--LALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLY 377
VN+E L L +NNL + N+ L + L N LE + K LE LY
Sbjct: 221 RGPVNVELTILKLQHNNLTDTAWLLNY--PGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278
Query: 378 LNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPS 437
++NN L NL G PIP +L++LD+S N++
Sbjct: 279 ISNNRLVA------LNLYG------------QPIP-------TLKVLDLSHNHL------ 307
Query: 438 CFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLS 475
+H+ +N + +S+VTL LS
Sbjct: 308 ---------LHVERNQPQFDRLENLYLDHNSIVTLKLS 336
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 604 IGHIPP-QIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE 661
I IPP +++ ++LS+N ++ L P F L+ + SL L NK+ ++P L E
Sbjct: 44 IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFE 101
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 604 IGHIPP-QIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE 661
I IPP +++ ++LS+N ++ L P F L+ + SL L NK+ ++P L E
Sbjct: 44 IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFE 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,062,467
Number of Sequences: 62578
Number of extensions: 950654
Number of successful extensions: 3155
Number of sequences better than 100.0: 125
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 1885
Number of HSP's gapped (non-prelim): 760
length of query: 788
length of database: 14,973,337
effective HSP length: 107
effective length of query: 681
effective length of database: 8,277,491
effective search space: 5636971371
effective search space used: 5636971371
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)