Query 003888
Match_columns 788
No_of_seqs 624 out of 4999
Neff 10.3
Searched_HMMs 46136
Date Thu Mar 28 13:48:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003888.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003888hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 8.1E-61 1.8E-65 576.8 45.1 541 75-704 70-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 8.5E-57 1.8E-61 541.9 42.6 521 97-705 68-589 (968)
3 KOG4194 Membrane glycoprotein 100.0 8.6E-43 1.9E-47 352.8 9.4 394 253-726 82-495 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.2E-39 2.6E-44 330.0 4.9 392 48-524 54-448 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 2.1E-40 4.6E-45 321.3 -14.3 478 46-676 45-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 5.4E-37 1.2E-41 297.7 -13.7 476 19-528 45-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 2E-35 4.3E-40 315.7 -7.2 311 10-384 13-323 (1081)
8 KOG0618 Serine/threonine phosp 100.0 2.5E-34 5.4E-39 307.4 -5.4 427 11-528 37-465 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 1.5E-32 3.2E-37 280.5 -4.5 369 248-680 6-379 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 6E-32 1.3E-36 276.0 -4.3 365 224-652 6-375 (1255)
11 KOG4237 Extracellular matrix p 99.9 6.4E-27 1.4E-31 227.7 -4.0 130 251-382 69-199 (498)
12 KOG4237 Extracellular matrix p 99.9 8.1E-27 1.7E-31 227.0 -5.3 281 254-539 51-346 (498)
13 PLN03210 Resistant to P. syrin 99.9 4.9E-22 1.1E-26 239.7 28.2 341 243-650 552-904 (1153)
14 PLN03210 Resistant to P. syrin 99.9 1.1E-21 2.5E-26 236.6 27.7 342 265-674 549-904 (1153)
15 PRK15387 E3 ubiquitin-protein 99.8 5.1E-20 1.1E-24 205.4 18.1 74 347-432 242-315 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 1.3E-19 2.7E-24 202.3 17.7 265 323-683 201-465 (788)
17 PRK15370 E3 ubiquitin-protein 99.7 6.9E-18 1.5E-22 190.0 11.6 97 275-384 179-275 (754)
18 PRK15370 E3 ubiquitin-protein 99.7 1.8E-17 3.8E-22 186.7 13.7 181 323-527 178-358 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 4.2E-18 9.2E-23 179.1 3.2 260 24-311 3-291 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 5.3E-19 1.2E-23 186.0 -3.9 34 303-336 3-36 (319)
21 KOG0617 Ras suppressor protein 99.6 1.8E-17 3.9E-22 143.4 -3.9 86 439-528 30-115 (264)
22 KOG0617 Ras suppressor protein 99.6 1.9E-17 4.1E-22 143.2 -4.2 180 463-700 29-212 (264)
23 PLN03150 hypothetical protein; 99.5 1.5E-13 3.2E-18 155.0 10.8 118 592-709 419-538 (623)
24 PLN03150 hypothetical protein; 99.2 1E-10 2.3E-15 132.0 10.6 114 516-681 419-533 (623)
25 KOG1909 Ran GTPase-activating 99.1 4.3E-12 9.3E-17 123.5 -1.3 96 40-136 25-133 (382)
26 PF14580 LRR_9: Leucine-rich r 99.1 3.5E-11 7.6E-16 110.5 4.1 108 45-161 18-126 (175)
27 KOG1259 Nischarin, modulator o 99.1 1.1E-11 2.3E-16 117.6 0.3 131 490-678 283-414 (490)
28 KOG0532 Leucine-rich repeat (L 99.1 4.8E-12 1E-16 130.5 -3.5 170 446-677 79-248 (722)
29 KOG3207 Beta-tubulin folding c 99.1 2.5E-11 5.5E-16 121.5 1.3 88 200-287 197-284 (505)
30 PF14580 LRR_9: Leucine-rich r 99.0 1.4E-10 2.9E-15 106.6 4.1 131 14-156 14-148 (175)
31 KOG3207 Beta-tubulin folding c 99.0 3.8E-11 8.2E-16 120.2 -0.2 63 224-286 120-184 (505)
32 KOG1259 Nischarin, modulator o 99.0 6.5E-11 1.4E-15 112.4 1.1 132 466-656 283-415 (490)
33 COG4886 Leucine-rich repeat (L 99.0 5.7E-10 1.2E-14 120.8 8.6 104 418-525 115-219 (394)
34 KOG0532 Leucine-rich repeat (L 99.0 7.8E-12 1.7E-16 128.9 -6.0 176 465-701 73-248 (722)
35 COG4886 Leucine-rich repeat (L 99.0 7.3E-10 1.6E-14 119.9 7.7 102 327-432 97-199 (394)
36 KOG4658 Apoptotic ATPase [Sign 98.9 7.3E-10 1.6E-14 127.7 5.9 132 15-158 519-652 (889)
37 KOG0531 Protein phosphatase 1, 98.9 1.1E-10 2.5E-15 126.1 -1.1 226 367-681 91-323 (414)
38 PF13855 LRR_8: Leucine rich r 98.9 8.6E-10 1.9E-14 83.1 3.7 60 592-651 2-61 (61)
39 KOG1909 Ran GTPase-activating 98.9 2E-10 4.3E-15 112.1 -0.1 234 196-431 26-310 (382)
40 PF13855 LRR_8: Leucine rich r 98.9 9.9E-10 2.1E-14 82.8 3.5 61 615-675 1-61 (61)
41 KOG4658 Apoptotic ATPase [Sign 98.8 6.5E-09 1.4E-13 119.9 7.1 272 223-504 521-807 (889)
42 KOG0531 Protein phosphatase 1, 98.8 6.8E-10 1.5E-14 120.1 -1.6 218 369-676 70-290 (414)
43 KOG2120 SCF ubiquitin ligase, 98.6 2.7E-09 5.9E-14 101.7 -4.4 109 200-308 185-296 (419)
44 COG5238 RNA1 Ran GTPase-activa 98.5 2.9E-08 6.3E-13 93.5 -0.3 223 39-287 24-285 (388)
45 KOG2120 SCF ubiquitin ligase, 98.4 1.5E-09 3.2E-14 103.5 -9.4 183 75-260 186-374 (419)
46 KOG1859 Leucine-rich repeat pr 98.4 1.2E-08 2.7E-13 108.6 -3.7 111 588-703 184-295 (1096)
47 KOG2982 Uncharacterized conser 98.3 8.9E-08 1.9E-12 91.5 -1.0 86 72-159 69-157 (418)
48 KOG1859 Leucine-rich repeat pr 98.2 2.8E-08 6.1E-13 105.9 -6.7 128 20-161 165-292 (1096)
49 KOG4341 F-box protein containi 98.2 9.6E-08 2.1E-12 95.8 -3.7 109 47-158 139-252 (483)
50 KOG2982 Uncharacterized conser 98.2 5.4E-07 1.2E-11 86.3 1.1 221 300-521 47-285 (418)
51 PF12799 LRR_4: Leucine Rich r 98.0 5.6E-06 1.2E-10 56.7 3.6 36 75-111 2-37 (44)
52 KOG4579 Leucine-rich repeat (L 98.0 3.5E-07 7.7E-12 77.2 -3.3 102 593-697 29-133 (177)
53 KOG4341 F-box protein containi 98.0 4.1E-07 8.8E-12 91.4 -3.6 300 20-330 139-459 (483)
54 KOG4579 Leucine-rich repeat (L 98.0 2.9E-07 6.2E-12 77.8 -4.5 59 616-676 78-136 (177)
55 KOG3665 ZYG-1-like serine/thre 97.9 1.6E-06 3.5E-11 97.8 -0.5 108 46-159 122-231 (699)
56 KOG1644 U2-associated snRNP A' 97.9 2E-05 4.3E-10 71.7 6.3 131 48-212 21-152 (233)
57 COG5238 RNA1 Ran GTPase-activa 97.9 1.3E-06 2.7E-11 82.7 -1.6 222 15-263 26-286 (388)
58 KOG1644 U2-associated snRNP A' 97.9 2.6E-05 5.6E-10 71.0 6.6 129 21-160 21-152 (233)
59 KOG3665 ZYG-1-like serine/thre 97.8 1.5E-05 3.3E-10 90.0 4.7 138 19-163 122-265 (699)
60 PF12799 LRR_4: Leucine Rich r 97.8 1.5E-05 3.2E-10 54.6 2.6 36 616-652 2-37 (44)
61 PF13306 LRR_5: Leucine rich r 97.7 7E-05 1.5E-09 66.6 6.1 121 294-421 8-128 (129)
62 PF13306 LRR_5: Leucine rich r 97.7 7E-05 1.5E-09 66.5 6.1 122 269-397 7-128 (129)
63 PRK15386 type III secretion pr 97.6 0.00016 3.4E-09 75.2 8.2 32 615-649 156-187 (426)
64 PRK15386 type III secretion pr 97.4 0.00063 1.4E-08 70.9 8.4 137 463-674 48-188 (426)
65 KOG2739 Leucine-rich acidic nu 97.2 9.7E-05 2.1E-09 70.5 0.1 103 44-154 41-149 (260)
66 KOG1947 Leucine rich repeat pr 97.0 7E-05 1.5E-09 83.8 -2.6 61 273-333 242-305 (482)
67 KOG2123 Uncharacterized conser 97.0 2.5E-05 5.3E-10 74.5 -5.7 79 75-158 20-98 (388)
68 KOG2739 Leucine-rich acidic nu 96.9 0.00066 1.4E-08 65.0 3.0 90 69-161 38-129 (260)
69 KOG1947 Leucine rich repeat pr 96.9 0.00019 4.2E-09 80.2 -0.8 241 44-310 186-439 (482)
70 KOG2123 Uncharacterized conser 96.6 9.2E-05 2E-09 70.7 -4.9 101 45-154 18-123 (388)
71 PF00560 LRR_1: Leucine Rich R 94.6 0.014 3E-07 33.1 0.6 11 642-652 3-13 (22)
72 PF00560 LRR_1: Leucine Rich R 94.3 0.018 3.9E-07 32.6 0.7 12 617-628 2-13 (22)
73 TIGR00864 PCC polycystin catio 93.5 0.039 8.5E-07 69.9 2.3 76 645-726 1-77 (2740)
74 KOG4308 LRR-containing protein 93.2 0.00065 1.4E-08 73.7 -12.1 87 48-135 89-184 (478)
75 PF13504 LRR_7: Leucine rich r 92.4 0.078 1.7E-06 27.8 1.2 11 100-110 3-13 (17)
76 smart00369 LRR_TYP Leucine-ric 91.6 0.18 3.9E-06 29.8 2.3 22 97-119 1-22 (26)
77 smart00370 LRR Leucine-rich re 91.6 0.18 3.9E-06 29.8 2.3 22 97-119 1-22 (26)
78 KOG3864 Uncharacterized conser 91.3 0.052 1.1E-06 50.1 -0.4 80 20-108 102-186 (221)
79 smart00369 LRR_TYP Leucine-ric 91.3 0.15 3.2E-06 30.2 1.7 19 615-633 2-20 (26)
80 smart00370 LRR Leucine-rich re 91.3 0.15 3.2E-06 30.2 1.7 19 615-633 2-20 (26)
81 KOG0473 Leucine-rich repeat pr 91.0 0.0067 1.5E-07 56.8 -6.4 84 44-135 40-123 (326)
82 KOG0473 Leucine-rich repeat pr 90.5 0.0071 1.5E-07 56.7 -6.7 93 9-111 32-124 (326)
83 KOG4308 LRR-containing protein 88.6 0.0063 1.4E-07 66.2 -10.1 141 19-163 87-248 (478)
84 KOG4242 Predicted myosin-I-bin 87.3 3 6.6E-05 44.0 8.7 63 98-161 214-281 (553)
85 KOG3864 Uncharacterized conser 87.2 0.059 1.3E-06 49.8 -3.1 84 226-309 102-187 (221)
86 smart00365 LRR_SD22 Leucine-ri 77.4 1.9 4.1E-05 25.5 1.7 14 615-628 2-15 (26)
87 PF13516 LRR_6: Leucine Rich r 75.9 2 4.3E-05 24.7 1.6 22 19-42 2-23 (24)
88 PF08693 SKG6: Transmembrane a 68.5 1.1 2.3E-05 29.5 -0.9 27 734-760 12-38 (40)
89 PHA03099 epidermal growth fact 66.8 3.6 7.8E-05 34.7 1.6 33 737-769 105-137 (139)
90 smart00364 LRR_BAC Leucine-ric 65.1 4.6 0.0001 23.8 1.4 18 98-116 2-19 (26)
91 KOG4242 Predicted myosin-I-bin 57.2 56 0.0012 35.0 8.5 61 46-110 214-280 (553)
92 KOG3763 mRNA export factor TAP 53.3 5.9 0.00013 42.9 0.9 62 590-653 217-284 (585)
93 TIGR00864 PCC polycystin catio 52.9 11 0.00023 49.3 3.2 35 621-655 1-35 (2740)
94 smart00368 LRR_RI Leucine rich 50.0 16 0.00034 22.0 2.0 12 47-58 3-14 (28)
95 PF01102 Glycophorin_A: Glycop 48.2 11 0.00024 32.3 1.6 20 735-754 67-86 (122)
96 PF15102 TMEM154: TMEM154 prot 40.5 9.8 0.00021 33.4 0.1 28 733-760 59-87 (146)
97 PF08374 Protocadherin: Protoc 39.9 25 0.00054 33.1 2.7 28 731-758 37-64 (221)
98 smart00367 LRR_CC Leucine-rich 37.7 23 0.0005 20.7 1.4 11 98-108 2-12 (26)
99 PF02009 Rifin_STEVOR: Rifin/s 36.7 34 0.00074 34.7 3.3 14 747-760 270-283 (299)
100 KOG3763 mRNA export factor TAP 36.4 24 0.00051 38.5 2.2 85 39-129 211-307 (585)
101 PTZ00370 STEVOR; Provisional 35.6 22 0.00047 35.2 1.7 12 750-761 272-283 (296)
102 PTZ00382 Variant-specific surf 34.8 12 0.00027 30.6 -0.1 15 737-751 71-85 (96)
103 PF07204 Orthoreo_P10: Orthore 34.4 24 0.00053 28.1 1.4 29 731-759 41-69 (98)
104 TIGR01478 STEVOR variant surfa 33.0 22 0.00049 35.0 1.3 12 750-761 276-287 (295)
105 PTZ00046 rifin; Provisional 28.3 37 0.0008 35.1 2.0 21 741-761 323-343 (358)
106 TIGR01477 RIFIN variant surfac 27.1 41 0.00088 34.7 2.0 20 742-761 319-338 (353)
107 PF15050 SCIMP: SCIMP protein 26.5 58 0.0013 27.3 2.4 29 733-761 8-36 (133)
108 PF04971 Lysis_S: Lysis protei 26.1 66 0.0014 24.2 2.4 31 731-761 32-62 (68)
109 smart00082 LRRCT Leucine rich 23.4 39 0.00085 23.5 0.9 10 697-706 1-10 (51)
110 PF05393 Hum_adeno_E3A: Human 21.4 1E+02 0.0023 24.3 2.8 18 740-757 38-55 (94)
111 PF04478 Mid2: Mid2 like cell 21.4 23 0.00049 31.5 -0.8 9 734-742 51-59 (154)
112 PF12191 stn_TNFRSF12A: Tumour 21.2 55 0.0012 27.9 1.4 15 749-763 96-110 (129)
113 PRK00523 hypothetical protein; 20.6 1.1E+02 0.0024 23.3 2.7 11 752-762 23-33 (72)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=8.1e-61 Score=576.78 Aligned_cols=541 Identities=33% Similarity=0.496 Sum_probs=393.6
Q ss_pred CCCEEEcCCCCCCcCCChhhcCCCCCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEE
Q 003888 75 HLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFD 154 (788)
Q Consensus 75 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~ 154 (788)
+++.|+|++|.+++.+|..|..+++|++|+|++|++.+.+|...+.++++|++|++++|.+.+.+|. +.+++|++|+
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~ 146 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLD 146 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEE
Confidence 4555555555555555555555555555555555555555553344555555555555555544442 2344555555
Q ss_pred ccCccccccccccccCCCCcccccEEEccCCCCCCCCcCccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCEEEcCC
Q 003888 155 AANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVN 234 (788)
Q Consensus 155 l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~ 234 (788)
+++|.+. +.+|..+..+++|++|++++|.+.+.+|..+ .++++|++|++++
T Consensus 147 Ls~n~~~----------------------------~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~ 197 (968)
T PLN00113 147 LSNNMLS----------------------------GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLAS 197 (968)
T ss_pred CcCCccc----------------------------ccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccC
Confidence 5544432 2234444555566666666666555555554 4566666666666
Q ss_pred CcccccCccCcCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCcc
Q 003888 235 DSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEI 314 (788)
Q Consensus 235 ~~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i 314 (788)
|.+++..|..+..+++|+.|++++|.+++.+|..+.. +++|++|++++|.+.+..|..++++++|++|++++|.+.+.+
T Consensus 198 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 276 (968)
T PLN00113 198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI 276 (968)
T ss_pred CCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc-CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccC
Confidence 6666666666666666666666666666666655544 566666666666666666666666667777777776666566
Q ss_pred chHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCC
Q 003888 315 PEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNL 394 (788)
Q Consensus 315 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l 394 (788)
|..+. .+++|++|++++|.+.+..+..+.++++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..|..+..+
T Consensus 277 p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~ 355 (968)
T PLN00113 277 PPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH 355 (968)
T ss_pred chhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCC
Confidence 66554 46667777777776666666666666677777777777666666666667777777777777666666666667
Q ss_pred CCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCC-CCCccEEEccCcccccccCcccccCCCCCcEEE
Q 003888 395 TGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFH-PLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLD 473 (788)
Q Consensus 395 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 473 (788)
++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+. +++|+.|++++|.+.+.+|.. +..+++|+.|+
T Consensus 356 ~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~ 434 (968)
T PLN00113 356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE-FTKLPLVYFLD 434 (968)
T ss_pred CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChh-HhcCCCCCEEE
Confidence 7777777777777666666666667777777777776666555443 566777777777776666655 88899999999
Q ss_pred ccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCc
Q 003888 474 LSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPF 553 (788)
Q Consensus 474 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (788)
+++|.+++..+..+..+++|+.|++++|++.+..|..+ ..++|+.|++++|++.+..|..+..
T Consensus 435 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~---------------- 497 (968)
T PLN00113 435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGS---------------- 497 (968)
T ss_pred CcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhh----------------
Confidence 99999999999888899999999999999998887755 4689999999999999888776654
Q ss_pred ccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCc
Q 003888 554 ETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPS 633 (788)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~ 633 (788)
+++|+.|++++|.+.+.+|..+.++++|++|+|++|.+++.+|.
T Consensus 498 ------------------------------------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 541 (968)
T PLN00113 498 ------------------------------------LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA 541 (968)
T ss_pred ------------------------------------hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCCh
Confidence 45899999999999999999999999999999999999999999
Q ss_pred cccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCCcccccCCCCccccCCCCCCCCCC
Q 003888 634 TFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP 704 (788)
Q Consensus 634 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~gn~~~c~~~ 704 (788)
.|+++++|+.|++++|++++.+|..+..+++|+.+++++|++.|.+|.. +++.++....+.||+.+|+.+
T Consensus 542 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 542 SFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred hHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCccccCCc
Confidence 9999999999999999999999999999999999999999999999984 778888889999999999754
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=8.5e-57 Score=541.91 Aligned_cols=521 Identities=32% Similarity=0.513 Sum_probs=479.5
Q ss_pred CCCCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEEccCccccccccccccCCCCccc
Q 003888 97 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQ 176 (788)
Q Consensus 97 l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 176 (788)
..+++.|||++|.+.+.++. .+..+++|++|++++|.+.+.+|...+..+++|++|++++|.+.+.
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~-~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~------------- 133 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISS-AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS------------- 133 (968)
T ss_pred CCcEEEEEecCCCccccCCh-HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccc-------------
Confidence 35799999999999988877 8999999999999999999888876677999999999999876532
Q ss_pred ccEEEccCCCCCCCCcCccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCcccccCccCcCCCCCccEEEc
Q 003888 177 LQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDV 256 (788)
Q Consensus 177 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 256 (788)
+|. ..+++|++|++++|.+.+.+|..+ +++++|++|++++|.+.+..|..+.++++|++|++
T Consensus 134 ---------------~p~--~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 134 ---------------IPR--GSIPNLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred ---------------cCc--cccCCCCEEECcCCcccccCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 221 246789999999999999898876 78999999999999999999999999999999999
Q ss_pred ccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCC
Q 003888 257 SNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLK 336 (788)
Q Consensus 257 ~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~ 336 (788)
++|.+.+.+|..+.. +++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+. .+++|++|++++|.++
T Consensus 196 ~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 196 ASNQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQNKLS 273 (968)
T ss_pred cCCCCcCcCChHHcC-cCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh-CCCCCCEEECcCCeee
Confidence 999999888988776 79999999999999999999999999999999999999988888776 7999999999999999
Q ss_pred CcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCcccccc
Q 003888 337 GHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFC 416 (788)
Q Consensus 337 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 416 (788)
+..+..+.++++|++|++++|.+.+..|..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+.
T Consensus 274 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 353 (968)
T PLN00113 274 GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG 353 (968)
T ss_pred ccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh
Confidence 88888899999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred CCCCccEEEccCCcCCCCCCCCCC-CCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCE
Q 003888 417 QLYSLQILDISDNNISGSLPSCFH-PLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSH 495 (788)
Q Consensus 417 ~l~~L~~L~l~~n~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 495 (788)
.+++|+.|++++|++.+..|..+. ..+++.+++.+|.+.+.+|.. +..+++|+.|++++|.+++..|..+..+++|+.
T Consensus 354 ~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 432 (968)
T PLN00113 354 KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS-LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYF 432 (968)
T ss_pred CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHH-HhCCCCCCEEECcCCEeeeECChhHhcCCCCCE
Confidence 999999999999999887776654 678999999999998888876 889999999999999999999999999999999
Q ss_pred EEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhcccccee
Q 003888 496 LILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFE 575 (788)
Q Consensus 496 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (788)
|++++|.+++..+..+..+++|+.|++++|++.+..|..+.
T Consensus 433 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~--------------------------------------- 473 (968)
T PLN00113 433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG--------------------------------------- 473 (968)
T ss_pred EECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc---------------------------------------
Confidence 99999999999998899999999999999999877665432
Q ss_pred eeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccC
Q 003888 576 FTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI 655 (788)
Q Consensus 576 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 655 (788)
.++|+.|++++|++++..|..+.++++|+.|+|++|++++.+|..+.++++|++|++++|.+++.+
T Consensus 474 --------------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 539 (968)
T PLN00113 474 --------------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI 539 (968)
T ss_pred --------------cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccC
Confidence 237999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCEEEccCCcCcccCCCcccccCCCCccccCCCCCCCCCCC
Q 003888 656 PHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPL 705 (788)
Q Consensus 656 p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~gn~~~c~~~l 705 (788)
|..+..+++|+.|++++|++++.+|..+..+..+..+++.+|++.+..|.
T Consensus 540 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 540 PASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred ChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 99999999999999999999999999988999999999999999886653
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=8.6e-43 Score=352.77 Aligned_cols=394 Identities=26% Similarity=0.315 Sum_probs=267.7
Q ss_pred EEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccC
Q 003888 253 FLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSN 332 (788)
Q Consensus 253 ~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~ 332 (788)
.||+++|++. .+....+..+++|+++++.+|.++ .+|.......+|+.|+|.+|.|+ ++.......++.|+.|||+.
T Consensus 82 ~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 82 TLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhhh
Confidence 3455555444 333333333455555555555444 33433333333555555555554 33333333344555555555
Q ss_pred ccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCcc
Q 003888 333 NNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIP 412 (788)
Q Consensus 333 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 412 (788)
|.|+.+....|..-.++++|+|++|+|+......|..+.+|..|.|++|+++...+..|.+++.|+.|++..|+|.-..-
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ 238 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG 238 (873)
T ss_pred chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh
Confidence 55554444444444455555555555554444455555555555555555554444444445555555555555442223
Q ss_pred ccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCC
Q 003888 413 VGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQ 492 (788)
Q Consensus 413 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 492 (788)
-.|.++++|+.|.+..|.+. .+..++|..|.++++|+|+.|++...-..|+-++++
T Consensus 239 ltFqgL~Sl~nlklqrN~I~------------------------kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~ 294 (873)
T KOG4194|consen 239 LTFQGLPSLQNLKLQRNDIS------------------------KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTS 294 (873)
T ss_pred hhhcCchhhhhhhhhhcCcc------------------------cccCcceeeecccceeecccchhhhhhcccccccch
Confidence 34455555555555555443 556667888899999999999998888888889999
Q ss_pred CCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhcccc
Q 003888 493 LSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHE 572 (788)
Q Consensus 493 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (788)
|+.|++++|.|..+.+++...+++|+.|+|++|+++...+..|..
T Consensus 295 L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~----------------------------------- 339 (873)
T KOG4194|consen 295 LEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV----------------------------------- 339 (873)
T ss_pred hhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHH-----------------------------------
Confidence 999999999998888888888899999999999988666655543
Q ss_pred ceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCC---ccccCCCCCCEEECcCC
Q 003888 573 NFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIP---STFSNLKHIESLDLSYN 649 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~Ls~N 649 (788)
++.|++|+|++|.+...-...|..+++|++|||++|.|+..+. ..|.++++|+.|++.+|
T Consensus 340 -----------------L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN 402 (873)
T KOG4194|consen 340 -----------------LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN 402 (873)
T ss_pred -----------------HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc
Confidence 4588999999999988778889999999999999999987665 35888999999999999
Q ss_pred cccccCCccccCCCCCCEEEccCCcCcccCCCcccccCCCCccccCCCCCCCCCCCC-----------------CCCCCC
Q 003888 650 KLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP-----------------ICRSPA 712 (788)
Q Consensus 650 ~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~gn~~~c~~~l~-----------------~c~~~~ 712 (788)
++..+.-.+|..++.|+.||+.+|.+...-|..|.++ .++.+.+..-.++|||.+. .|..|+
T Consensus 403 qlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~CayPe 481 (873)
T KOG4194|consen 403 QLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAKCAYPE 481 (873)
T ss_pred eeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHHHHhcccccceeeeccCCc
Confidence 9986666889999999999999999998889888888 8888888888999999764 799999
Q ss_pred CCCcccCCCCCCCC
Q 003888 713 TMSEASIGNERDDN 726 (788)
Q Consensus 713 ~~~~~~~~~~~~~~ 726 (788)
...+.++...+...
T Consensus 482 ~Lad~~i~svd~~~ 495 (873)
T KOG4194|consen 482 PLADQSIVSVDTAN 495 (873)
T ss_pred ccccceeEeechhh
Confidence 98887665554443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-39 Score=329.98 Aligned_cols=392 Identities=24% Similarity=0.275 Sum_probs=303.9
Q ss_pred CcEEeCCCCCCCCCCCCCCcccccCCC--CCCEEEcCCCCCCcCCChhhcCCCCCCEEECCCCcCcCcCChhhhcC-CCC
Q 003888 48 LKYLSMSDSTLGTNSSRILDQGLCSLM--HLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVH-LTS 124 (788)
Q Consensus 48 L~~L~Ls~~~l~~~~~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~-l~~ 124 (788)
-+.||.++..+ ..+....+.... .-+.|++++|++...-+..|.++++|+++++.+|.++ .||. +++ ..+
T Consensus 54 ~~lldcs~~~l----ea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~--f~~~sgh 126 (873)
T KOG4194|consen 54 TRLLDCSDREL----EAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPR--FGHESGH 126 (873)
T ss_pred ceeeecCcccc----ccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccc--ccccccc
Confidence 34567777666 332222222222 2345888888888777777788888888888888887 7777 444 345
Q ss_pred CCEEECcCccccccCCccccccCCCCcEEEccCccccccccccccCCCCcccccEEEccCCCCCCCCcCccccCCCCCCE
Q 003888 125 IEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLED 204 (788)
Q Consensus 125 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 204 (788)
|++|+|.+|.|+ .+..+.+.-++.|+.||++.|.++.
T Consensus 127 l~~L~L~~N~I~-sv~se~L~~l~alrslDLSrN~is~------------------------------------------ 163 (873)
T KOG4194|consen 127 LEKLDLRHNLIS-SVTSEELSALPALRSLDLSRNLISE------------------------------------------ 163 (873)
T ss_pred eeEEeeeccccc-cccHHHHHhHhhhhhhhhhhchhhc------------------------------------------
Confidence 778888777766 3344455555555555555554432
Q ss_pred EEcCCCcCCCCCchhHhhcCCCCCEEEcCCCcccccCccCcCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccC
Q 003888 205 VRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMN 284 (788)
Q Consensus 205 L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n 284 (788)
+|..-+..-.++++|+|++|+++......|..+.+|..|.|++|.++ .+|...|+.+++|+.|+|..|
T Consensus 164 -----------i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 164 -----------IPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred -----------ccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhcccc
Confidence 22211223457888899999998888888889999999999999998 899999998999999999999
Q ss_pred cCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCC
Q 003888 285 ALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIP 364 (788)
Q Consensus 285 ~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 364 (788)
+|.-.....|.++++|+.|.+..|.|. .+.+..|..+.++++|+|..|+++......+.+++.|+.|+++.|.|..+.+
T Consensus 232 ~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~ 310 (873)
T KOG4194|consen 232 RIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI 310 (873)
T ss_pred ceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec
Confidence 998655668999999999999999998 8888888899999999999999999888889999999999999999999999
Q ss_pred ccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCc
Q 003888 365 QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSI 444 (788)
Q Consensus 365 ~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L 444 (788)
+++..+++|++|+|++|+++...+..|..+..|++|.+++|.+......+|..+.+|++||+++|.++..+.+.
T Consensus 311 d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDa------ 384 (873)
T KOG4194|consen 311 DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA------ 384 (873)
T ss_pred chhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc------
Confidence 99999999999999999999888889999999999999999999887888999999999999999887543321
Q ss_pred cEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccC
Q 003888 445 EQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSN 524 (788)
Q Consensus 445 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 524 (788)
..+|.++++|+.|++.+|++..+...+|.++++|++|+|.+|.|..+.+.+|..+ .|+.|.+..
T Consensus 385 ---------------a~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 385 ---------------AVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred ---------------hhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 1236667777777777777776666677777777777777777776777777766 666665543
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.1e-40 Score=321.30 Aligned_cols=478 Identities=26% Similarity=0.385 Sum_probs=264.9
Q ss_pred CCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhhcCCCCCCEEECCCCcCcCcCChhhhcCCCCC
Q 003888 46 PSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSI 125 (788)
Q Consensus 46 ~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L 125 (788)
..++.+++++|.+ ..+.+ .+.++..|.+|++++|+++ .+|.+++.+..++.|+.++|+++ .+|+ +++.+.+|
T Consensus 45 v~l~~lils~N~l----~~l~~-dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~-~i~s~~~l 116 (565)
T KOG0472|consen 45 VDLQKLILSHNDL----EVLRE-DLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPE-QIGSLISL 116 (565)
T ss_pred cchhhhhhccCch----hhccH-hhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccH-HHhhhhhh
Confidence 3566777888877 44443 5778888888888888877 67778888888888888888887 7887 78888888
Q ss_pred CEEECcCccccccCCccccccCCCCcEEEccCccccccccccccCCCCcccccEEEccCCCCCCCCcCccccCCCCCCEE
Q 003888 126 EELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDV 205 (788)
Q Consensus 126 ~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 205 (788)
++++.++|.+.. .+ ..++.+..|..++..+|+++. .|..++.+.++..+
T Consensus 117 ~~l~~s~n~~~e-l~-~~i~~~~~l~dl~~~~N~i~s-----------------------------lp~~~~~~~~l~~l 165 (565)
T KOG0472|consen 117 VKLDCSSNELKE-LP-DSIGRLLDLEDLDATNNQISS-----------------------------LPEDMVNLSKLSKL 165 (565)
T ss_pred hhhhccccceee-cC-chHHHHhhhhhhhcccccccc-----------------------------CchHHHHHHHHHHh
Confidence 888888887763 22 245666666666655555432 24444455555555
Q ss_pred EcCCCcCCCCCchhHhhcCCCCCEEEcCCCcccccCccCcCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCc
Q 003888 206 RLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNA 285 (788)
Q Consensus 206 ~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~ 285 (788)
++.++++...-|..+ +++.|++|+.. .|.+. .+|.+++. +.+|.-|++..|+
T Consensus 166 ~~~~n~l~~l~~~~i--~m~~L~~ld~~------------------------~N~L~-tlP~~lg~-l~~L~~LyL~~Nk 217 (565)
T KOG0472|consen 166 DLEGNKLKALPENHI--AMKRLKHLDCN------------------------SNLLE-TLPPELGG-LESLELLYLRRNK 217 (565)
T ss_pred hccccchhhCCHHHH--HHHHHHhcccc------------------------hhhhh-cCChhhcc-hhhhHHHHhhhcc
Confidence 555555544333322 24444444444 44443 45555443 4455555555555
Q ss_pred CCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCc
Q 003888 286 LDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQ 365 (788)
Q Consensus 286 ~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 365 (788)
+. ..| .|.+|..|..+.++.|.|. .+|.....+++++..||+..|+++. .|+.++-+.+|++||+++|.++ ..|.
T Consensus 218 i~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is-~Lp~ 292 (565)
T KOG0472|consen 218 IR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDIS-SLPY 292 (565)
T ss_pred cc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc-CchHHHHhhhhhhhcccCCccc-cCCc
Confidence 54 233 4555555666666666555 5555555555556666666666554 3444455555666666666665 4455
Q ss_pred cccCCCCCCEEEccCCcCCCCCcccccC-----CCCCCE----EeCCCC---c------ccCCccccccCCCCccEEEcc
Q 003888 366 SLSKCSSLEGLYLNNNSLSGKIPRWLGN-----LTGLKH----IIMPEN---H------LEGPIPVGFCQLYSLQILDIS 427 (788)
Q Consensus 366 ~l~~l~~L~~L~L~~n~i~~~~~~~~~~-----l~~L~~----L~l~~n---~------~~~~~~~~~~~l~~L~~L~l~ 427 (788)
.++++ .|+.|.+.+|++..+-.+.+.. ++.|+. =.++.. . ..... .........+.|+++
T Consensus 293 sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~-~~~~~~i~tkiL~~s 370 (565)
T KOG0472|consen 293 SLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESF-PDIYAIITTKILDVS 370 (565)
T ss_pred ccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcc-cchhhhhhhhhhccc
Confidence 56665 5666666666553211111110 011111 000000 0 00000 111223445556666
Q ss_pred CCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCE-EEccCCcCccc
Q 003888 428 DNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSH-LILGHNNLEGE 506 (788)
Q Consensus 428 ~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~-L~L~~n~l~~~ 506 (788)
+-+++.++.+.|.... -.-.+..+++.|++. .+|..+..+..+.+ +.+++|.+. .
T Consensus 371 ~~qlt~VPdEVfea~~----------------------~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-f 426 (565)
T KOG0472|consen 371 DKQLTLVPDEVFEAAK----------------------SEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-F 426 (565)
T ss_pred ccccccCCHHHHHHhh----------------------hcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-c
Confidence 6555544444443211 012344555555554 34444433333322 233333333 4
Q ss_pred cCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeec
Q 003888 507 VPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQ 586 (788)
Q Consensus 507 ~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (788)
+|..++.+++|..|++++|.+.. +|..+..
T Consensus 427 v~~~l~~l~kLt~L~L~NN~Ln~-LP~e~~~------------------------------------------------- 456 (565)
T KOG0472|consen 427 VPLELSQLQKLTFLDLSNNLLND-LPEEMGS------------------------------------------------- 456 (565)
T ss_pred chHHHHhhhcceeeecccchhhh-cchhhhh-------------------------------------------------
Confidence 45555555555555555554432 1211111
Q ss_pred ccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCC
Q 003888 587 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLA 666 (788)
Q Consensus 587 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 666 (788)
+..|+.||++.|.+. ..|..+..+..++.+-.++|++....|+.+.++.+|+.||+.+|.+. .+|..++++++|+
T Consensus 457 ---lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~ 531 (565)
T KOG0472|consen 457 ---LVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLR 531 (565)
T ss_pred ---hhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhcccccee
Confidence 224556666666555 56666666666676666777777776677777777777777777776 6666777777777
Q ss_pred EEEccCCcCc
Q 003888 667 VFSVAYNNLS 676 (788)
Q Consensus 667 ~L~l~~N~l~ 676 (788)
.|+++||++.
T Consensus 532 hLeL~gNpfr 541 (565)
T KOG0472|consen 532 HLELDGNPFR 541 (565)
T ss_pred EEEecCCccC
Confidence 7777777777
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=5.4e-37 Score=297.72 Aligned_cols=476 Identities=24% Similarity=0.347 Sum_probs=310.4
Q ss_pred CCccEEEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhhcCCC
Q 003888 19 KSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMT 98 (788)
Q Consensus 19 ~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 98 (788)
.-+..+.+ +.|.+. ++.+.+. ++..|.+|++++|++ .++|+ +++.+..++.|+.++|+++ ++|..+..+.
T Consensus 45 v~l~~lil--s~N~l~-~l~~dl~-nL~~l~vl~~~~n~l----~~lp~-aig~l~~l~~l~vs~n~ls-~lp~~i~s~~ 114 (565)
T KOG0472|consen 45 VDLQKLIL--SHNDLE-VLREDLK-NLACLTVLNVHDNKL----SQLPA-AIGELEALKSLNVSHNKLS-ELPEQIGSLI 114 (565)
T ss_pred cchhhhhh--ccCchh-hccHhhh-cccceeEEEeccchh----hhCCH-HHHHHHHHHHhhcccchHh-hccHHHhhhh
Confidence 34445555 555544 2333444 666666666666666 45554 5666666666666666665 5666666666
Q ss_pred CCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEEccCccccccccccccCCCCccccc
Q 003888 99 SLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQ 178 (788)
Q Consensus 99 ~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~ 178 (788)
+|++|+.++|.+. ++|+ .++.+..|+.++..+|+++.. | +.+.++.+|..+++.+|.+....+... ....|+
T Consensus 115 ~l~~l~~s~n~~~-el~~-~i~~~~~l~dl~~~~N~i~sl-p-~~~~~~~~l~~l~~~~n~l~~l~~~~i----~m~~L~ 186 (565)
T KOG0472|consen 115 SLVKLDCSSNELK-ELPD-SIGRLLDLEDLDATNNQISSL-P-EDMVNLSKLSKLDLEGNKLKALPENHI----AMKRLK 186 (565)
T ss_pred hhhhhhcccccee-ecCc-hHHHHhhhhhhhccccccccC-c-hHHHHHHHHHHhhccccchhhCCHHHH----HHHHHH
Confidence 6666666666665 5555 566666666666666666522 2 245556666666666665543222211 112344
Q ss_pred EEEccCCCCCCCCcCccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCcccccCccCcCCCCCccEEEccc
Q 003888 179 ALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSN 258 (788)
Q Consensus 179 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~ 258 (788)
+++. +....+.+|..++.+.+|+.|++..|++.. .| . |.+|+.|+++++..|++..........++++..||+.+
T Consensus 187 ~ld~--~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~-lP-e-f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd 261 (565)
T KOG0472|consen 187 HLDC--NSNLLETLPPELGGLESLELLYLRRNKIRF-LP-E-FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD 261 (565)
T ss_pred hccc--chhhhhcCChhhcchhhhHHHHhhhccccc-CC-C-CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc
Confidence 4443 122345677788888888888888887653 45 2 25778888888888887765555566788888888888
Q ss_pred CcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCC--CCCEE-------E
Q 003888 259 NNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCV--NLEFL-------A 329 (788)
Q Consensus 259 n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~--~L~~L-------~ 329 (788)
|+++ +.|+++.. +.+|..||+++|.|+ ..|..++++ .|+.|.+.+|.+. +|-..+..+-+ =|++| .
T Consensus 262 Nklk-e~Pde~cl-LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dg 336 (565)
T KOG0472|consen 262 NKLK-EVPDEICL-LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDG 336 (565)
T ss_pred cccc-cCchHHHH-hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCC
Confidence 8887 78888776 677888888888887 456668888 7888888888776 44433321100 01111 0
Q ss_pred ccCccC--------CCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCC---CCCEEEccCCcCCCCCcccccCCCCCC
Q 003888 330 LSNNNL--------KGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCS---SLEGLYLNNNSLSGKIPRWLGNLTGLK 398 (788)
Q Consensus 330 L~~n~i--------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~---~L~~L~L~~n~i~~~~~~~~~~l~~L~ 398 (788)
++..+- ............+.+.|++++-+++ .+|+....-. -.+..+++.|++. +.|..+..+..+.
T Consensus 337 lS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelv 414 (565)
T KOG0472|consen 337 LSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELV 414 (565)
T ss_pred CCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHH
Confidence 111100 0011112224556788888888888 4554433323 3778888888886 6676666655544
Q ss_pred E-EeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCC
Q 003888 399 H-IIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYN 477 (788)
Q Consensus 399 ~-L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n 477 (788)
+ +.+++|.+. .+|..++.+++|..|++++|.+...+.+.+....|+.++++.|++ ..+|.- ......++.+-.++|
T Consensus 415 T~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrF-r~lP~~-~y~lq~lEtllas~n 491 (565)
T KOG0472|consen 415 TDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRF-RMLPEC-LYELQTLETLLASNN 491 (565)
T ss_pred HHHHhhcCccc-cchHHHHhhhcceeeecccchhhhcchhhhhhhhhheeccccccc-ccchHH-HhhHHHHHHHHhccc
Confidence 4 444555444 677778888888888888888877666666677788888888877 344443 444456777777889
Q ss_pred cCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCC
Q 003888 478 RLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLH 528 (788)
Q Consensus 478 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~ 528 (788)
++....++.+.++.+|..|++.+|.+. .+|..++++.+|+.|++.+|+|.
T Consensus 492 qi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 492 QIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 998777777899999999999999998 67778999999999999999987
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=2e-35 Score=315.74 Aligned_cols=311 Identities=29% Similarity=0.353 Sum_probs=157.8
Q ss_pred ecCCCCCCCCCccEEEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcC
Q 003888 10 VRGQGFPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGS 89 (788)
Q Consensus 10 ~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 89 (788)
||.+.+.+-. +..|++ ..|-+-..-.+++. +.-+|++||+++|.+ +..|. .++.+++|+.|+++.|.|. .
T Consensus 13 ip~~i~~~~~-~~~ln~--~~N~~l~~pl~~~~-~~v~L~~l~lsnn~~----~~fp~-~it~l~~L~~ln~s~n~i~-~ 82 (1081)
T KOG0618|consen 13 IPEQILNNEA-LQILNL--RRNSLLSRPLEFVE-KRVKLKSLDLSNNQI----SSFPI-QITLLSHLRQLNLSRNYIR-S 82 (1081)
T ss_pred cchhhccHHH-HHhhhc--cccccccCchHHhh-heeeeEEeecccccc----ccCCc-hhhhHHHHhhcccchhhHh-h
Confidence 4543333333 666666 55554332234444 444577777777776 45554 5667777777777777766 5
Q ss_pred CChhhcCCCCCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEEccCcccccccccccc
Q 003888 90 LPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHS 169 (788)
Q Consensus 90 ~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 169 (788)
.|.+..++.+|++|+|.+|.+. .+|. .+..+.+|++|++++|++. .+|. .+..+..+.++..++|....
T Consensus 83 vp~s~~~~~~l~~lnL~~n~l~-~lP~-~~~~lknl~~LdlS~N~f~-~~Pl-~i~~lt~~~~~~~s~N~~~~------- 151 (1081)
T KOG0618|consen 83 VPSSCSNMRNLQYLNLKNNRLQ-SLPA-SISELKNLQYLDLSFNHFG-PIPL-VIEVLTAEEELAASNNEKIQ------- 151 (1081)
T ss_pred Cchhhhhhhcchhheeccchhh-cCch-hHHhhhcccccccchhccC-CCch-hHHhhhHHHHHhhhcchhhh-------
Confidence 5666777777777777777776 6676 6777777777777777664 3332 34445555555555551110
Q ss_pred CCCCcccccEEEccCCCCCCCCcCccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCcccccCccCcCCCC
Q 003888 170 LTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHR 249 (788)
Q Consensus 170 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~~~ 249 (788)
.++.. .++.+++..+.+.+.++... ..+.. .|+|.+|.+. ...+..++
T Consensus 152 -------------------------~lg~~-~ik~~~l~~n~l~~~~~~~i-~~l~~--~ldLr~N~~~---~~dls~~~ 199 (1081)
T KOG0618|consen 152 -------------------------RLGQT-SIKKLDLRLNVLGGSFLIDI-YNLTH--QLDLRYNEME---VLDLSNLA 199 (1081)
T ss_pred -------------------------hhccc-cchhhhhhhhhcccchhcch-hhhhe--eeecccchhh---hhhhhhcc
Confidence 00011 14455555555555554432 12222 3555555554 12233444
Q ss_pred CccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEE
Q 003888 250 WLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLA 329 (788)
Q Consensus 250 ~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~ 329 (788)
+|+.+....|++. .+.. .-++++.|+.+.|.++...+. .--.+|+++++++|+++ .+|+++. .+.+|+.++
T Consensus 200 ~l~~l~c~rn~ls-~l~~----~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~-~~~nle~l~ 270 (1081)
T KOG0618|consen 200 NLEVLHCERNQLS-ELEI----SGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIG-ACANLEALN 270 (1081)
T ss_pred chhhhhhhhcccc-eEEe----cCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHH-hcccceEec
Confidence 5555555555443 1111 124555555555555422111 11234555555555554 4554443 355555555
Q ss_pred ccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCC
Q 003888 330 LSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLS 384 (788)
Q Consensus 330 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~ 384 (788)
..+|+++. .+..+....+|+.|++..|.+. -+|....+++.|++|+|..|.+.
T Consensus 271 ~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~ 323 (1081)
T KOG0618|consen 271 ANHNRLVA-LPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP 323 (1081)
T ss_pred ccchhHHh-hHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc
Confidence 55555533 2333334444555555555444 33333444444555555544444
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=2.5e-34 Score=307.42 Aligned_cols=427 Identities=27% Similarity=0.320 Sum_probs=324.3
Q ss_pred cCCCCCCCCCccEEEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCC
Q 003888 11 RGQGFPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSL 90 (788)
Q Consensus 11 ~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 90 (788)
|..+..+.-+|++||+ +++++. .+|..+. .+.+|+.|+++.|.+ ..+|. +..++.+|++|.|.+|.+. .+
T Consensus 37 pl~~~~~~v~L~~l~l--snn~~~-~fp~~it-~l~~L~~ln~s~n~i----~~vp~-s~~~~~~l~~lnL~~n~l~-~l 106 (1081)
T KOG0618|consen 37 PLEFVEKRVKLKSLDL--SNNQIS-SFPIQIT-LLSHLRQLNLSRNYI----RSVPS-SCSNMRNLQYLNLKNNRLQ-SL 106 (1081)
T ss_pred chHHhhheeeeEEeec--cccccc-cCCchhh-hHHHHhhcccchhhH----hhCch-hhhhhhcchhheeccchhh-cC
Confidence 4445666677999999 999976 6788888 999999999999999 67775 7889999999999999988 88
Q ss_pred ChhhcCCCCCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEEccCccccccccccccC
Q 003888 91 PWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSL 170 (788)
Q Consensus 91 ~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 170 (788)
|..+..+++|++||+|+|.+. .+|. .+..++.++.+..++|.... .++... .+.+++..|.+.
T Consensus 107 P~~~~~lknl~~LdlS~N~f~-~~Pl-~i~~lt~~~~~~~s~N~~~~-----~lg~~~-ik~~~l~~n~l~--------- 169 (1081)
T KOG0618|consen 107 PASISELKNLQYLDLSFNHFG-PIPL-VIEVLTAEEELAASNNEKIQ-----RLGQTS-IKKLDLRLNVLG--------- 169 (1081)
T ss_pred chhHHhhhcccccccchhccC-CCch-hHHhhhHHHHHhhhcchhhh-----hhcccc-chhhhhhhhhcc---------
Confidence 999999999999999999997 9998 89999999999999993221 122222 555555554433
Q ss_pred CCCcccccEEEccCCCCCCCCcCccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCcccccCccCcCCCCC
Q 003888 171 TAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRW 250 (788)
Q Consensus 171 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~~~~ 250 (788)
+.++..+..+.. .+++..|.+. ... ...+.+|+.|....|++..... .-++
T Consensus 170 -------------------~~~~~~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls~l~~----~g~~ 220 (1081)
T KOG0618|consen 170 -------------------GSFLIDIYNLTH--QLDLRYNEME-VLD---LSNLANLEVLHCERNQLSELEI----SGPS 220 (1081)
T ss_pred -------------------cchhcchhhhhe--eeecccchhh-hhh---hhhccchhhhhhhhcccceEEe----cCcc
Confidence 333333444444 5788888765 111 2467788888888877664222 3467
Q ss_pred ccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEc
Q 003888 251 LRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLAL 330 (788)
Q Consensus 251 L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L 330 (788)
++.|+.+.|.++ ....... ..+|+.++++.|.++ .+|+++..+++|+.++..+|.++ .+|..++ ...+|+.|.+
T Consensus 221 l~~L~a~~n~l~-~~~~~p~--p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~-~~~~L~~l~~ 294 (1081)
T KOG0618|consen 221 LTALYADHNPLT-TLDVHPV--PLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRIS-RITSLVSLSA 294 (1081)
T ss_pred hheeeeccCcce-eeccccc--cccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHh-hhhhHHHHHh
Confidence 888999999887 2222211 358999999999998 46699999999999999999997 9999988 5889999999
Q ss_pred cCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccc-cCCC-CCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCccc
Q 003888 331 SNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSL-SKCS-SLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLE 408 (788)
Q Consensus 331 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l-~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~ 408 (788)
..|++..+. ....+++.|++|+|..|.+. ..|+.+ .... .|+.|+.+.|++.......=...+.|+.|++.+|.++
T Consensus 295 ~~nel~yip-~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Lt 372 (1081)
T KOG0618|consen 295 AYNELEYIP-PFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLT 372 (1081)
T ss_pred hhhhhhhCC-Ccccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccc
Confidence 999998754 45567899999999999998 455433 3332 3677777777776322111122567888888888888
Q ss_pred CCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCcccc
Q 003888 409 GPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVD 488 (788)
Q Consensus 409 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 488 (788)
+..-..+.+.+.|+.|++++|.+. .+|...+.+++.|++|+||+|+++ .+|..+.
T Consensus 373 d~c~p~l~~~~hLKVLhLsyNrL~------------------------~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva 427 (1081)
T KOG0618|consen 373 DSCFPVLVNFKHLKVLHLSYNRLN------------------------SFPASKLRKLEELEELNLSGNKLT-TLPDTVA 427 (1081)
T ss_pred ccchhhhccccceeeeeecccccc------------------------cCCHHHHhchHHhHHHhcccchhh-hhhHHHH
Confidence 777677778888888888888774 455555778888888888888887 5677788
Q ss_pred CCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCC
Q 003888 489 GLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLH 528 (788)
Q Consensus 489 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~ 528 (788)
.++.|++|...+|++. ..| .+..+++|+.+|++.|.++
T Consensus 428 ~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 428 NLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred hhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhh
Confidence 8888888888888887 556 6788888888888888775
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.5e-32 Score=280.48 Aligned_cols=369 Identities=25% Similarity=0.362 Sum_probs=207.7
Q ss_pred CCCccEEEcccCcCc-ccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCC
Q 003888 248 HRWLRFLDVSNNNFQ-GHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLE 326 (788)
Q Consensus 248 ~~~L~~L~L~~n~i~-~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~ 326 (788)
++-.+-+|+++|.++ +.+|.+.-+ +++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+...+. .++.|+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs-~Lp~LR 81 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELS-DLPRLR 81 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhc-cchhhH
Confidence 344555677777776 445555544 566777777666664 46666777777777777777665 4544443 466666
Q ss_pred EEEccCccCCC-cCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCC
Q 003888 327 FLALSNNNLKG-HMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPEN 405 (788)
Q Consensus 327 ~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n 405 (788)
.+.+..|++.. -+|..+..+..|+.|+|++|+++ ..|..+..-+++-.|+|++|+|..+....|.+++.|-.|++++|
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 66676666542 23444556666777777777766 56666666666667777777666444445556666666677776
Q ss_pred cccCCccccccCCCCccEEEccCCcCCCCC-CCCCCCCCccEEEccCcccc-cccCcccccCCCCCcEEEccCCcCCCCC
Q 003888 406 HLEGPIPVGFCQLYSLQILDISDNNISGSL-PSCFHPLSIEQVHLSKNMLH-GQLKRGTFFHCSSLVTLDLSYNRLNGSI 483 (788)
Q Consensus 406 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 483 (788)
++. ..|.....+..|++|++++|.+.... .....+.+|+.|.+++.+-+ ..+|.. +..+.+|..+|+|.|.+. ..
T Consensus 161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N~Lp-~v 237 (1255)
T KOG0444|consen 161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSENNLP-IV 237 (1255)
T ss_pred hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhccccccCCC-cc
Confidence 666 44555566666666777666654211 11222344555555544322 122322 455555555555555554 45
Q ss_pred CccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCccccccccccc
Q 003888 484 PNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMM 563 (788)
Q Consensus 484 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (788)
|+.+..+++|+.|+|++|+|+. ..-......+|++|++|.|+++ ..|.++..
T Consensus 238 Pecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcK-------------------------- 289 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCK-------------------------- 289 (1255)
T ss_pred hHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhh--------------------------
Confidence 5555555555555555555552 2222333445555555555554 23333322
Q ss_pred chhhhccccceeeeeccceeeecccccccccEEECCCCcccc-cCcccccCcccCCeEeCCCCcCCccCCccccCCCCCC
Q 003888 564 IPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIG-HIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIE 642 (788)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 642 (788)
++.|+.|++.+|+++- -+|..++.+.+|+.+..++|++. ..|+++..+..|+
T Consensus 290 --------------------------L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~ 342 (1255)
T KOG0444|consen 290 --------------------------LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQ 342 (1255)
T ss_pred --------------------------hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHH
Confidence 3355555666665542 34555666666666666665555 4556666666666
Q ss_pred EEECcCCcccccCCccccCCCCCCEEEccCCcCcccCC
Q 003888 643 SLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIP 680 (788)
Q Consensus 643 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p 680 (788)
.|.|++|++. .+|+++.-++.|+.||+..|+=.-..|
T Consensus 343 kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 343 KLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred Hhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 6666666654 556666666666666666665443333
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=6e-32 Score=276.03 Aligned_cols=365 Identities=23% Similarity=0.319 Sum_probs=212.1
Q ss_pred CCCCCEEEcCCCccc-ccCccCcCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCE
Q 003888 224 NTKLRQLYLVNDSLT-GPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQI 302 (788)
Q Consensus 224 l~~L~~L~L~~~~l~-~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 302 (788)
++-.+-.++++|.+. +.+|.....+..++.|.|...++. .+|.+++. +.+|++|.+++|++.. +-..+..++.|+.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~-lqkLEHLs~~HN~L~~-vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSR-LQKLEHLSMAHNQLIS-VHGELSDLPRLRS 82 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHH-HhhhhhhhhhhhhhHh-hhhhhccchhhHH
Confidence 344455566666666 345556666666666666666665 66666655 5666666666666653 2334566666666
Q ss_pred EEcccCcCCC-ccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCC
Q 003888 303 LDLSNNQLTG-EIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNN 381 (788)
Q Consensus 303 L~l~~n~i~~-~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 381 (788)
+.+..|++.. -||..+| .+..|+.|||++|+++. .|..+...+++-.|+|++|+|..+....|.++..|-.|||++|
T Consensus 83 v~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HhhhccccccCCCCchhc-ccccceeeecchhhhhh-cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 6666665542 2566665 46666666666666655 3444555566666666666666443344556666666666666
Q ss_pred cCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCC-CCCCCCC-CCCCccEEEccCcccccccC
Q 003888 382 SLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNIS-GSLPSCF-HPLSIEQVHLSKNMLHGQLK 459 (788)
Q Consensus 382 ~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~-~~~~L~~L~l~~n~~~~~~~ 459 (788)
++. ..|..+..+..|+.|.+++|.+....-..+..+++|++|.+++.+-+ ..+|... .+.+|..++++.|.+. .+|
T Consensus 161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vP 238 (1255)
T KOG0444|consen 161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVP 238 (1255)
T ss_pred hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cch
Confidence 665 45555666666666666666655433333445555666666655422 1122222 2556666666666652 222
Q ss_pred cccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCC-CCCCCCcCc
Q 003888 460 RGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHG-PIPPCFDNT 538 (788)
Q Consensus 460 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~-~~~~~~~~~ 538 (788)
. .+..+++|+.|+||+|+++. ..-....-.+|++|+++.|+++ ..|++++.++.|+.|.+.+|+++- -+|..++.
T Consensus 239 e-cly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGK- 314 (1255)
T KOG0444|consen 239 E-CLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGK- 314 (1255)
T ss_pred H-HHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhh-
Confidence 2 25566666666666666653 2222333456666666666666 556666666666666666666542 12222222
Q ss_pred ccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCC
Q 003888 539 TLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQ 618 (788)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 618 (788)
+..|+.+..++|.+. .+|+.++.+..|+
T Consensus 315 ---------------------------------------------------L~~Levf~aanN~LE-lVPEglcRC~kL~ 342 (1255)
T KOG0444|consen 315 ---------------------------------------------------LIQLEVFHAANNKLE-LVPEGLCRCVKLQ 342 (1255)
T ss_pred ---------------------------------------------------hhhhHHHHhhccccc-cCchhhhhhHHHH
Confidence 235666666666665 6666666666666
Q ss_pred eEeCCCCcCCccCCccccCCCCCCEEECcCCccc
Q 003888 619 TLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 652 (788)
Q Consensus 619 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 652 (788)
.|.|++|++.. .|+++.-++.|+.||+..|+-.
T Consensus 343 kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 343 KLKLDHNRLIT-LPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred Hhcccccceee-chhhhhhcCCcceeeccCCcCc
Confidence 66666666663 3566666666666666666654
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=6.4e-27 Score=227.72 Aligned_cols=130 Identities=21% Similarity=0.242 Sum_probs=76.1
Q ss_pred ccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEccc-CcCCCccchHHHhcCCCCCEEE
Q 003888 251 LRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSN-NQLTGEIPEHLAVSCVNLEFLA 329 (788)
Q Consensus 251 L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~-n~i~~~i~~~~~~~l~~L~~L~ 329 (788)
...++|..|+|+ .+|...|+.+++|+.|+|++|.|+.+.|++|.++++|..|.+.+ |+|+ .+|...|.++..|+.|.
T Consensus 69 tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 69 TVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL 146 (498)
T ss_pred ceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence 444555555555 55555555556666666666666666666666666655554444 5555 66666666666666666
Q ss_pred ccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCc
Q 003888 330 LSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNS 382 (788)
Q Consensus 330 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 382 (788)
+.-|++..+..+.|..+++|..|.+.+|.+..+--.+|..+..++.+.+..|.
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 66666666555566666666666666666553333355555666666555554
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=8.1e-27 Score=227.05 Aligned_cols=281 Identities=21% Similarity=0.234 Sum_probs=223.6
Q ss_pred EEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccC-
Q 003888 254 LDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSN- 332 (788)
Q Consensus 254 L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~- 332 (788)
.+-++-.++ ++|.++ .+..++++|..|.|+.+.+.+|+.+++|+.|||++|.|+ .|....|.+++++.+|-+.+
T Consensus 51 VdCr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 51 VDCRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred EEccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcC
Confidence 455555565 788776 458899999999999999999999999999999999999 78777788899988887766
Q ss_pred ccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccC---
Q 003888 333 NNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEG--- 409 (788)
Q Consensus 333 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~--- 409 (788)
|+|+.+....|.++..|+.|.+.-|++..+..++|..++++..|.+.+|.+..+....|..+..++.+.+..|.+..
T Consensus 126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc
Confidence 99999999999999999999999999998888999999999999999999985555589999999999998887431
Q ss_pred ---------CccccccCCCCccEEEccCCcCCCCCCCCCCCC--CccEEEccCcccccccCcccccCCCCCcEEEccCCc
Q 003888 410 ---------PIPVGFCQLYSLQILDISDNNISGSLPSCFHPL--SIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNR 478 (788)
Q Consensus 410 ---------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~ 478 (788)
..+..++......-..+.+.++..+.+..|... .+..-..+.+...+..|...|..+++|++|++++|+
T Consensus 206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~ 285 (498)
T KOG4237|consen 206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK 285 (498)
T ss_pred cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence 122233333333333344444443444333322 222223344445567777789999999999999999
Q ss_pred CCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcc
Q 003888 479 LNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTT 539 (788)
Q Consensus 479 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~ 539 (788)
++++-+.+|.+...+++|.|..|++.......|.++..|+.|+|.+|+|+...|..|....
T Consensus 286 i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~ 346 (498)
T KOG4237|consen 286 ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF 346 (498)
T ss_pred cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccc
Confidence 9999999999999999999999999877788899999999999999999988888887654
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=4.9e-22 Score=239.71 Aligned_cols=341 Identities=22% Similarity=0.242 Sum_probs=209.4
Q ss_pred cCcCCCCCccEEEcccCc------CcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccch
Q 003888 243 LPIHSHRWLRFLDVSNNN------FQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPE 316 (788)
Q Consensus 243 ~~l~~~~~L~~L~L~~n~------i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~ 316 (788)
.+|..+++|+.|.+..+. +...+|..+....++|+.|++.++.+. .+|..| ...+|+.|++.+|.+. .++.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~ 628 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD 628 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc
Confidence 345566667766665442 222345444443345777777776665 445544 3567777777777765 5655
Q ss_pred HHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCC
Q 003888 317 HLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTG 396 (788)
Q Consensus 317 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 396 (788)
.+. .+++|+.|+++++......+ .+..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+ ++++
T Consensus 629 ~~~-~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s 705 (1153)
T PLN03210 629 GVH-SLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS 705 (1153)
T ss_pred ccc-cCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC
Confidence 543 56777777777654333222 35566777777777766555667677777777777777765444555443 5667
Q ss_pred CCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCccccc------ccCcccccCCCCCc
Q 003888 397 LKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHG------QLKRGTFFHCSSLV 470 (788)
Q Consensus 397 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~------~~~~~~~~~~~~L~ 470 (788)
|+.|++++|......|.. .++|+.|++++|.+.. .|......+|+.|.+.++.... .++...+..+++|+
T Consensus 706 L~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~ 781 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE-FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLT 781 (1153)
T ss_pred CCEEeCCCCCCccccccc---cCCcCeeecCCCcccc-ccccccccccccccccccchhhccccccccchhhhhccccch
Confidence 777777776544444432 3466777777776653 3444455666666665533210 11111123346777
Q ss_pred EEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCC
Q 003888 471 TLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSL 550 (788)
Q Consensus 471 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~ 550 (788)
.|++++|.....+|..+.++++|+.|++++|...+.+|... .+++|+.|++++|.....+|..
T Consensus 782 ~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---------------- 844 (1153)
T PLN03210 782 RLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---------------- 844 (1153)
T ss_pred heeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc----------------
Confidence 88888776666677777778888888887775444555544 5777888888777543222211
Q ss_pred CCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCcc
Q 003888 551 KPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGL 630 (788)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 630 (788)
.++|+.|+|++|.+. .+|..+..+++|+.|++++|+-...
T Consensus 845 ---------------------------------------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~ 884 (1153)
T PLN03210 845 ---------------------------------------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQR 884 (1153)
T ss_pred ---------------------------------------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCc
Confidence 236777888888877 5677788888888888877433334
Q ss_pred CCccccCCCCCCEEECcCCc
Q 003888 631 IPSTFSNLKHIESLDLSYNK 650 (788)
Q Consensus 631 ~~~~~~~l~~L~~L~Ls~N~ 650 (788)
+|..+..+++|+.+++++|.
T Consensus 885 l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 885 VSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cCcccccccCCCeeecCCCc
Confidence 55566777888888887775
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.1e-21 Score=236.59 Aligned_cols=342 Identities=22% Similarity=0.269 Sum_probs=254.4
Q ss_pred CChhhhhcCCCCcEEEcccCcC------CCCCcccccCCC-CCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCC
Q 003888 265 IPVEIGDILPSLISFNISMNAL------DSSIPSSFGNMN-FLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKG 337 (788)
Q Consensus 265 ~~~~~~~~l~~L~~L~L~~n~~------~~~~~~~~~~l~-~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~ 337 (788)
+....+..+++|+.|.+..+.. ...+|..|..++ +|+.|.+.++.+. .+|..+ ...+|++|++++|.+..
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~ 625 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEK 625 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccc
Confidence 3445566688898888865532 224566666664 5889999888887 888776 37889999999988876
Q ss_pred cCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccC
Q 003888 338 HMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQ 417 (788)
Q Consensus 338 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 417 (788)
. +..+..+++|+.|+++++.....+|. +..+++|+.|++++|......|..+..+++|+.|++++|.....+|..+ +
T Consensus 626 L-~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~ 702 (1153)
T PLN03210 626 L-WDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N 702 (1153)
T ss_pred c-ccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence 3 45567788999999988765546664 7788899999999887666788888888999999998876555666554 6
Q ss_pred CCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCC-------CCCccccCC
Q 003888 418 LYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNG-------SIPNWVDGL 490 (788)
Q Consensus 418 l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-------~~~~~~~~l 490 (788)
+++|+.|++++|......|.. ..+|+.|++++|.+ ..+|.. + .+++|+.|++.++.... ..+......
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i-~~lP~~-~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~ 777 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAI-EEFPSN-L-RLENLDELILCEMKSEKLWERVQPLTPLMTMLS 777 (1153)
T ss_pred CCCCCEEeCCCCCCccccccc--cCCcCeeecCCCcc-cccccc-c-cccccccccccccchhhccccccccchhhhhcc
Confidence 888999999988655555543 35788888888887 345543 2 56788888887754221 112222335
Q ss_pred CCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhcc
Q 003888 491 SQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQI 570 (788)
Q Consensus 491 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (788)
++|+.|++++|.....+|..+.++++|+.|++++|...+.+|...
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~----------------------------------- 822 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI----------------------------------- 822 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-----------------------------------
Confidence 789999999988777788889999999999999886544444322
Q ss_pred ccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCc
Q 003888 571 HENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNK 650 (788)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 650 (788)
.+++|+.|++++|......|.. .++|+.|+|++|.++. +|..+..+++|+.|++++|+
T Consensus 823 ------------------~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~ 880 (1153)
T PLN03210 823 ------------------NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCN 880 (1153)
T ss_pred ------------------CccccCEEECCCCCcccccccc---ccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCC
Confidence 1458999999998765555543 3689999999999985 57889999999999999965
Q ss_pred ccccCCccccCCCCCCEEEccCCc
Q 003888 651 LNGKIPHQLVELKTLAVFSVAYNN 674 (788)
Q Consensus 651 l~~~~p~~l~~l~~L~~L~l~~N~ 674 (788)
-...+|..+..+++|+.+++++|.
T Consensus 881 ~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 881 NLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CcCccCcccccccCCCeeecCCCc
Confidence 545678788899999999999985
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=5.1e-20 Score=205.41 Aligned_cols=74 Identities=32% Similarity=0.503 Sum_probs=32.8
Q ss_pred CCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEc
Q 003888 347 TNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDI 426 (788)
Q Consensus 347 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 426 (788)
++|++|++++|+++ .+|.. .++|+.|++++|.+. .+|.. .++|+.|++++|+++. +|. ..++|+.|++
T Consensus 242 ~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdL 309 (788)
T PRK15387 242 PELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSV 309 (788)
T ss_pred CCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeEC
Confidence 44555555555444 22321 234455555555544 22221 1344455555555542 222 1244555555
Q ss_pred cCCcCC
Q 003888 427 SDNNIS 432 (788)
Q Consensus 427 ~~n~~~ 432 (788)
++|+++
T Consensus 310 S~N~L~ 315 (788)
T PRK15387 310 SDNQLA 315 (788)
T ss_pred CCCccc
Confidence 555554
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.82 E-value=1.3e-19 Score=202.29 Aligned_cols=265 Identities=25% Similarity=0.284 Sum_probs=196.3
Q ss_pred CCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeC
Q 003888 323 VNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIM 402 (788)
Q Consensus 323 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 402 (788)
.+-..|+++++.++.+ |..+. ++|+.|++.+|+++ .+|. ..++|++|++++|+++. +|.. .++|+.|++
T Consensus 201 ~~~~~LdLs~~~LtsL-P~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLTTL-PDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCCcC-Ccchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCc-ccCc---ccccceeec
Confidence 3456677777777653 33333 46788888888887 4554 25789999999999984 4532 468999999
Q ss_pred CCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCC
Q 003888 403 PENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGS 482 (788)
Q Consensus 403 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 482 (788)
++|.+.. +|.. .++|+.|++++|+++.... .+++|+.|++++|.+.+ +|.. ..+|+.|++++|++++
T Consensus 270 s~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~-Lp~l----p~~L~~L~Ls~N~L~~- 336 (788)
T PRK15387 270 FSNPLTH-LPAL---PSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLAS-LPAL----PSELCKLWAYNNQLTS- 336 (788)
T ss_pred cCCchhh-hhhc---hhhcCEEECcCCccccccc---cccccceeECCCCcccc-CCCC----cccccccccccCcccc-
Confidence 9999874 4432 3578899999999885432 24679999999998854 4432 2468888899998874
Q ss_pred CCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccc
Q 003888 483 IPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSM 562 (788)
Q Consensus 483 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (788)
+|.. ..+|++|++++|++++ +|.. .++|+.|++++|.+.+ +|..
T Consensus 337 LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---------------------------- 380 (788)
T PRK15387 337 LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---------------------------- 380 (788)
T ss_pred cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc----------------------------
Confidence 4432 2578899999999884 4432 3578888888888763 2211
Q ss_pred cchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCC
Q 003888 563 MIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIE 642 (788)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 642 (788)
+++|+.|++++|++++ +|.. .++|+.|++++|+++++ |.. ..+|+
T Consensus 381 ---------------------------~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~LssI-P~l---~~~L~ 425 (788)
T PRK15387 381 ---------------------------PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTSL-PML---PSGLL 425 (788)
T ss_pred ---------------------------ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCCC-Ccc---hhhhh
Confidence 2368999999999984 5543 36899999999999964 543 35788
Q ss_pred EEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCCcc
Q 003888 643 SLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWT 683 (788)
Q Consensus 643 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~ 683 (788)
.|++++|+++ .+|..+.++++|+.|++++|++++..|..+
T Consensus 426 ~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 426 SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 9999999998 789999999999999999999998877654
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.74 E-value=6.9e-18 Score=189.99 Aligned_cols=97 Identities=27% Similarity=0.416 Sum_probs=48.1
Q ss_pred CCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEec
Q 003888 275 SLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQL 354 (788)
Q Consensus 275 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 354 (788)
+.+.|+++++.++. +|..+ .+.|+.|++++|.++ .+|..++ ++|++|++++|.++.++ ..+ .++|+.|++
T Consensus 179 ~~~~L~L~~~~Lts-LP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsLP-~~l--~~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILGLTT-IPACI--PEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSIP-ATL--PDTIQEMEL 248 (754)
T ss_pred CceEEEeCCCCcCc-CCccc--ccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccCC-hhh--hccccEEEC
Confidence 45566666666553 34333 235666666666665 5555442 35666666666555432 221 124555555
Q ss_pred cCCcCCCcCCccccCCCCCCEEEccCCcCC
Q 003888 355 EGNHLEGEIPQSLSKCSSLEGLYLNNNSLS 384 (788)
Q Consensus 355 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~ 384 (788)
++|.+. .+|..+. .+|+.|++++|.++
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~ 275 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS 275 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC
Confidence 555554 3333332 24455555554444
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.73 E-value=1.8e-17 Score=186.69 Aligned_cols=181 Identities=27% Similarity=0.395 Sum_probs=95.2
Q ss_pred CCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeC
Q 003888 323 VNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIM 402 (788)
Q Consensus 323 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 402 (788)
.+...|++++++++.++ ..+ .++|+.|++++|+++ .+|..+. ++|+.|++++|.++ .+|..+. ++|+.|++
T Consensus 178 ~~~~~L~L~~~~LtsLP-~~I--p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLTTIP-ACI--PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcCcCC-ccc--ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 35677888877777643 222 246778888888777 4554443 47788888887776 3454332 36777777
Q ss_pred CCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCC
Q 003888 403 PENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGS 482 (788)
Q Consensus 403 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 482 (788)
++|.+. .+|..+. .+|+.|++++|+++.. |..+ +.+|+.|++++|.+.. +|.. + .++|+.|++++|+++.
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~L-P~~l-~~sL~~L~Ls~N~Lt~-LP~~-l--p~sL~~L~Ls~N~Lt~- 318 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKISCL-PENL-PEELRYLSVYDNSIRT-LPAH-L--PSGITHLNVQSNSLTA- 318 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccCcc-cccc-CCCCcEEECCCCcccc-Cccc-c--hhhHHHHHhcCCcccc-
Confidence 777776 4454443 3677777777776632 2221 1245555555554432 2221 1 1234444455444442
Q ss_pred CCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcC
Q 003888 483 IPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNL 527 (788)
Q Consensus 483 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i 527 (788)
+|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|++
T Consensus 319 LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L 358 (754)
T PRK15370 319 LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQI 358 (754)
T ss_pred CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCC
Confidence 22211 1344444444444442 222221 3444444444444
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=4.2e-18 Score=179.10 Aligned_cols=260 Identities=23% Similarity=0.277 Sum_probs=134.6
Q ss_pred EEcccCCcccccc-hhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCc------CCChhhcC
Q 003888 24 LDMVFARTALNTS-FLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRG------SLPWCLAN 96 (788)
Q Consensus 24 L~L~~~~~~~~~~-~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~l~~ 96 (788)
|+| .++.+++. ....+. .+++|++|+++++.+...+.......+...+.|++|+++++.+.+ .++.++..
T Consensus 3 l~L--~~~~l~~~~~~~~~~-~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~ 79 (319)
T cd00116 3 LSL--KGELLKTERATELLP-KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK 79 (319)
T ss_pred ccc--ccCcccccchHHHHH-HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh
Confidence 455 66666533 233344 666777777777776421111112234566667777777776652 23445666
Q ss_pred CCCCCEEECCCCcCcCcCChhhhcCCCC---CCEEECcCccccccCC---ccccccC-CCCcEEEccCcccccccccccc
Q 003888 97 MTSLRILDVSSNQLTGSISSSPLVHLTS---IEELMLSNNHFQIPIS---LEPLFNH-SRLKIFDAANNEIKAEITESHS 169 (788)
Q Consensus 97 l~~L~~L~Ls~n~~~~~i~~~~l~~l~~---L~~L~Ls~n~l~~~~~---~~~l~~l-~~L~~L~l~~n~~~~~~~~~~~ 169 (788)
+++|++|++++|.+.+..+. .+..+.+ |++|++++|.+.+... ...+..+ ++|++|++++|.+++...
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~-~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~---- 154 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCG-VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC---- 154 (319)
T ss_pred cCceeEEEccCCCCChhHHH-HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH----
Confidence 77777777777777633333 4444444 7777777776652111 0123344 566666666665542100
Q ss_pred CCCCcccccEEEccCCCCCCCCcCccccCCCCCCEEEcCCCcCCCCCchhH---hhcCCCCCEEEcCCCccccc----Cc
Q 003888 170 LTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWL---LENNTKLRQLYLVNDSLTGP----FR 242 (788)
Q Consensus 170 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~l~~L~~L~L~~~~l~~~----~~ 242 (788)
..++..+..+++|++|++++|.+.+.....+ +..+++|++|++++|.+++. ..
T Consensus 155 --------------------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 214 (319)
T cd00116 155 --------------------EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALA 214 (319)
T ss_pred --------------------HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHH
Confidence 0122333445566666776666654322221 12334666666666665532 12
Q ss_pred cCcCCCCCccEEEcccCcCcccCChhhhhc----CCCCcEEEcccCcCCC----CCcccccCCCCCCEEEcccCcCC
Q 003888 243 LPIHSHRWLRFLDVSNNNFQGHIPVEIGDI----LPSLISFNISMNALDS----SIPSSFGNMNFLQILDLSNNQLT 311 (788)
Q Consensus 243 ~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~----l~~L~~L~L~~n~~~~----~~~~~~~~l~~L~~L~l~~n~i~ 311 (788)
..+..+++|++|++++|.+++.....+... .+.|++|++++|.++. .+...+..+++|+++++++|.+.
T Consensus 215 ~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 215 ETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 234455666666666666554222232222 2456666666665541 11223344455555555555554
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=5.3e-19 Score=185.95 Aligned_cols=34 Identities=29% Similarity=0.332 Sum_probs=17.0
Q ss_pred EEcccCcCCCccchHHHhcCCCCCEEEccCccCC
Q 003888 303 LDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLK 336 (788)
Q Consensus 303 L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~ 336 (788)
|+|..+.+++.-....+..+.+|++++++++.++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~ 36 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLG 36 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCc
Confidence 4555555543333333334555666666665553
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=1.8e-17 Score=143.41 Aligned_cols=86 Identities=30% Similarity=0.461 Sum_probs=53.2
Q ss_pred CCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCC
Q 003888 439 FHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQ 518 (788)
Q Consensus 439 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 518 (788)
|.+..++.|.+++|+++ .+|+. ++.+.+|+.|++++|+++ ..|..++.+++|+.|+++-|++. ..|..|+.+|.|+
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppn-ia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPN-IAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCc-HHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 33444444444444442 33333 566667777777777776 45666677777777777777766 6666777777777
Q ss_pred EEEccCCcCC
Q 003888 519 LLDLSNNNLH 528 (788)
Q Consensus 519 ~L~Ls~n~i~ 528 (788)
.||+.+|.+.
T Consensus 106 vldltynnl~ 115 (264)
T KOG0617|consen 106 VLDLTYNNLN 115 (264)
T ss_pred hhhccccccc
Confidence 7777766654
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=1.9e-17 Score=143.24 Aligned_cols=180 Identities=28% Similarity=0.467 Sum_probs=150.6
Q ss_pred ccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCccccc
Q 003888 463 FFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE 542 (788)
Q Consensus 463 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 542 (788)
+-.+..++.|.+++|+++ ..|..+..+.+|+.|++.+|++. ..|..++.+++|+.|+++-|++. ..|..|+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs----- 100 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGS----- 100 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCC-----
Confidence 446678899999999999 56667889999999999999998 67888999999999999999886 55666655
Q ss_pred ccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccc-cCcccccCcccCCeEe
Q 003888 543 SSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIG-HIPPQIGNLTRIQTLN 621 (788)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~ 621 (788)
+|.|+.|||++|++.+ ..|..|..++.|+.|+
T Consensus 101 -----------------------------------------------~p~levldltynnl~e~~lpgnff~m~tlraly 133 (264)
T KOG0617|consen 101 -----------------------------------------------FPALEVLDLTYNNLNENSLPGNFFYMTTLRALY 133 (264)
T ss_pred -----------------------------------------------CchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence 5589999999999864 6789999999999999
Q ss_pred CCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCCcccccCCC---CccccCCCC
Q 003888 622 LSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATF---NESSYEGNT 698 (788)
Q Consensus 622 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~---~~~~~~gn~ 698 (788)
|+.|.+. ++|..++++++|+.|.+..|.+. .+|..++.++.|+.|++.+|+++...|+ ++++.-. .....+.||
T Consensus 134 l~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppe-l~~l~l~~~k~v~r~E~NP 210 (264)
T KOG0617|consen 134 LGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPE-LANLDLVGNKQVMRMEENP 210 (264)
T ss_pred hcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChh-hhhhhhhhhHHHHhhhhCC
Confidence 9999998 56778899999999999999998 7899999999999999999999976665 4444322 123345566
Q ss_pred CC
Q 003888 699 FL 700 (788)
Q Consensus 699 ~~ 700 (788)
|.
T Consensus 211 wv 212 (264)
T KOG0617|consen 211 WV 212 (264)
T ss_pred CC
Confidence 64
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.47 E-value=1.5e-13 Score=154.95 Aligned_cols=118 Identities=36% Similarity=0.629 Sum_probs=107.4
Q ss_pred cccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEcc
Q 003888 592 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVA 671 (788)
Q Consensus 592 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 671 (788)
.++.|+|++|.+.+.+|..++.+++|+.|+|++|.+++.+|..++.+++|+.|+|++|++++.+|+.+.++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccCCCccccc-CCCCccccCCCCCCCCCCC-CCCC
Q 003888 672 YNNLSGEIPEWTAQF-ATFNESSYEGNTFLCGLPL-PICR 709 (788)
Q Consensus 672 ~N~l~~~~p~~~~~~-~~~~~~~~~gn~~~c~~~l-~~c~ 709 (788)
+|+++|.+|..+... ..+..+++.+|+.+|++|. ..|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999876553 4556788999999998763 4564
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.16 E-value=1e-10 Score=132.01 Aligned_cols=114 Identities=33% Similarity=0.522 Sum_probs=101.6
Q ss_pred CCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccE
Q 003888 516 QLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSG 595 (788)
Q Consensus 516 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 595 (788)
.++.|+|++|.+.+.+|..+.. +++|+.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~----------------------------------------------------L~~L~~ 446 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISK----------------------------------------------------LRHLQS 446 (623)
T ss_pred EEEEEECCCCCccccCCHHHhC----------------------------------------------------CCCCCE
Confidence 4678999999998888876655 458999
Q ss_pred EECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCC-CCCCEEEccCCc
Q 003888 596 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL-KTLAVFSVAYNN 674 (788)
Q Consensus 596 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~l~~N~ 674 (788)
|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|+.++++++|++|+|++|++++.+|..+... .++..+++.+|+
T Consensus 447 L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred EECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999988764 577899999998
Q ss_pred CcccCCC
Q 003888 675 LSGEIPE 681 (788)
Q Consensus 675 l~~~~p~ 681 (788)
..|..|.
T Consensus 527 ~lc~~p~ 533 (623)
T PLN03150 527 GLCGIPG 533 (623)
T ss_pred cccCCCC
Confidence 7776554
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.14 E-value=4.3e-12 Score=123.49 Aligned_cols=96 Identities=29% Similarity=0.377 Sum_probs=61.0
Q ss_pred HHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCC---CCCcCCChh-------hcCCCCCCEEECCCCc
Q 003888 40 IIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNN---DLRGSLPWC-------LANMTSLRILDVSSNQ 109 (788)
Q Consensus 40 ~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n---~l~~~~~~~-------l~~l~~L~~L~Ls~n~ 109 (788)
.+. .+..++.++||+|.++.-..+.....+.+.+.|+..++|.- +....+|.+ +-.+++|++||||.|-
T Consensus 25 ~~~-~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 25 ELE-PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred Hhc-ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 344 67788888888888853222222335667777888777653 233344433 4567788888888888
Q ss_pred CcCcCCh---hhhcCCCCCCEEECcCcccc
Q 003888 110 LTGSISS---SPLVHLTSIEELMLSNNHFQ 136 (788)
Q Consensus 110 ~~~~i~~---~~l~~l~~L~~L~Ls~n~l~ 136 (788)
+.-.-+. .-+++++.|++|.|.+|.+.
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 7622222 24567788888888888764
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.13 E-value=3.5e-11 Score=110.46 Aligned_cols=108 Identities=30% Similarity=0.390 Sum_probs=33.7
Q ss_pred CCCCcEEeCCCCCCCCCCCCCCccccc-CCCCCCEEEcCCCCCCcCCChhhcCCCCCCEEECCCCcCcCcCChhhhcCCC
Q 003888 45 MPSLKYLSMSDSTLGTNSSRILDQGLC-SLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLT 123 (788)
Q Consensus 45 l~~L~~L~Ls~~~l~~~~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~ 123 (788)
..++++|+|++|.| ..+. .++ .+.+|++|+|++|.|+.. +.+..+++|++|++++|.|+ .++......++
T Consensus 18 ~~~~~~L~L~~n~I----~~Ie--~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp 88 (175)
T PF14580_consen 18 PVKLRELNLRGNQI----STIE--NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLP 88 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-T
T ss_pred cccccccccccccc----cccc--chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCC
Confidence 34566677777766 3343 244 466677777777776643 24666677777777777776 56541223567
Q ss_pred CCCEEECcCccccccCCccccccCCCCcEEEccCcccc
Q 003888 124 SIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIK 161 (788)
Q Consensus 124 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~ 161 (788)
+|++|++++|++...-....++.+++|+.|++.+|++.
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 77777777777664444455666677777777777654
No 27
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.12 E-value=1.1e-11 Score=117.65 Aligned_cols=131 Identities=27% Similarity=0.277 Sum_probs=92.0
Q ss_pred CCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhc
Q 003888 490 LSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQ 569 (788)
Q Consensus 490 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (788)
...|+++++++|.|+ .+.++..-+|.++.|++|+|.+..... +
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n--L---------------------------------- 325 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN--L---------------------------------- 325 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh--h----------------------------------
Confidence 355777777777777 445566667777777777777652111 1
Q ss_pred cccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCC
Q 003888 570 IHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN 649 (788)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 649 (788)
..+++|+.||||+|.++. +..+-..+-+.++|.|+.|.|.++ +++..+-+|..||+++|
T Consensus 326 ------------------a~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N 384 (490)
T KOG1259|consen 326 ------------------AELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSN 384 (490)
T ss_pred ------------------hhcccceEeecccchhHh-hhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheecccccc
Confidence 115577788888887773 334445677888888888888766 67788888888888888
Q ss_pred cccccC-CccccCCCCCCEEEccCCcCccc
Q 003888 650 KLNGKI-PHQLVELKTLAVFSVAYNNLSGE 678 (788)
Q Consensus 650 ~l~~~~-p~~l~~l~~L~~L~l~~N~l~~~ 678 (788)
+|.... ...++++|-|+.+.+.+|++.+.
T Consensus 385 ~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 385 QIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred chhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 886422 24677888888888888888854
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.09 E-value=4.8e-12 Score=130.48 Aligned_cols=170 Identities=32% Similarity=0.470 Sum_probs=116.1
Q ss_pred EEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCC
Q 003888 446 QVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNN 525 (788)
Q Consensus 446 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 525 (788)
..+++.|++ .++|.. +..+..|+.+.+..|.+. .+|..+..+..|+.|+|+.|++. ..|..++.++ |+.|-+++|
T Consensus 79 ~aDlsrNR~-~elp~~-~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 79 FADLSRNRF-SELPEE-ACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhcccccc-ccCchH-HHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence 344444444 344443 555566777777777766 56667777777777777777776 5566666555 677777777
Q ss_pred cCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccc
Q 003888 526 NLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIG 605 (788)
Q Consensus 526 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 605 (788)
+++. +|..+.. .+.|..||.+.|.+.
T Consensus 154 kl~~-lp~~ig~----------------------------------------------------~~tl~~ld~s~nei~- 179 (722)
T KOG0532|consen 154 KLTS-LPEEIGL----------------------------------------------------LPTLAHLDVSKNEIQ- 179 (722)
T ss_pred cccc-CCccccc----------------------------------------------------chhHHHhhhhhhhhh-
Confidence 7653 2222221 346777888888887
Q ss_pred cCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcc
Q 003888 606 HIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSG 677 (788)
Q Consensus 606 ~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 677 (788)
.+|..++++.+|+.|.++.|++...+ ..+.. -.|..||+|.|+++ .+|..|.+|+.|++|-|.+|+|+.
T Consensus 180 slpsql~~l~slr~l~vrRn~l~~lp-~El~~-LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 180 SLPSQLGYLTSLRDLNVRRNHLEDLP-EELCS-LPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hchHHhhhHHHHHHHHHhhhhhhhCC-HHHhC-CceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence 66777888888888888888888654 34443 34778888888887 788888888888888888888874
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=2.5e-11 Score=121.45 Aligned_cols=88 Identities=23% Similarity=0.235 Sum_probs=42.3
Q ss_pred CCCCEEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCcccccCccCcCCCCCccEEEcccCcCcccCChhhhhcCCCCcEE
Q 003888 200 HDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISF 279 (788)
Q Consensus 200 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L 279 (788)
+.|+.|.+++|+++-.-..+....+|+|+.|++..|............+..|++|||++|++.+.-.......+|.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 45555666666655433344445566666666666642222222333344555556665554421111111224555555
Q ss_pred EcccCcCC
Q 003888 280 NISMNALD 287 (788)
Q Consensus 280 ~L~~n~~~ 287 (788)
+++.|.+.
T Consensus 277 nls~tgi~ 284 (505)
T KOG3207|consen 277 NLSSTGIA 284 (505)
T ss_pred hccccCcc
Confidence 55555544
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.04 E-value=1.4e-10 Score=106.60 Aligned_cols=131 Identities=22% Similarity=0.362 Sum_probs=53.7
Q ss_pred CCCCCCCccEEEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChh
Q 003888 14 GFPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWC 93 (788)
Q Consensus 14 ~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 93 (788)
.+-+..+++.|+| .++.++.. +.+...+.+|+.||+++|.+ ..+. .+..+++|++|++++|+|+.. ...
T Consensus 14 ~~~n~~~~~~L~L--~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I----~~l~--~l~~L~~L~~L~L~~N~I~~i-~~~ 82 (175)
T PF14580_consen 14 QYNNPVKLRELNL--RGNQISTI--ENLGATLDKLEVLDLSNNQI----TKLE--GLPGLPRLKTLDLSNNRISSI-SEG 82 (175)
T ss_dssp --------------------------S--TT-TT--EEE-TTS------S--T--T----TT--EEE--SS---S--CHH
T ss_pred ccccccccccccc--cccccccc--cchhhhhcCCCEEECCCCCC----cccc--CccChhhhhhcccCCCCCCcc-ccc
Confidence 4667778999999 99998753 23432578999999999999 5565 588999999999999999954 444
Q ss_pred h-cCCCCCCEEECCCCcCcCcCCh-hhhcCCCCCCEEECcCccccccCC--ccccccCCCCcEEEcc
Q 003888 94 L-ANMTSLRILDVSSNQLTGSISS-SPLVHLTSIEELMLSNNHFQIPIS--LEPLFNHSRLKIFDAA 156 (788)
Q Consensus 94 l-~~l~~L~~L~Ls~n~~~~~i~~-~~l~~l~~L~~L~Ls~n~l~~~~~--~~~l~~l~~L~~L~l~ 156 (788)
+ ..+++|++|++++|+|. .+.. ..++.+++|++|++.+|+++.... ...+..+++|+.||-.
T Consensus 83 l~~~lp~L~~L~L~~N~I~-~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNKIS-DLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred hHHhCCcCCEEECcCCcCC-ChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 5 47999999999999997 4432 357889999999999999874311 1246778999998743
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=3.8e-11 Score=120.24 Aligned_cols=63 Identities=33% Similarity=0.349 Sum_probs=25.2
Q ss_pred CCCCCEEEcCCCcccccCc-cCcCCCCCccEEEcccCcCcccCC-hhhhhcCCCCcEEEcccCcC
Q 003888 224 NTKLRQLYLVNDSLTGPFR-LPIHSHRWLRFLDVSNNNFQGHIP-VEIGDILPSLISFNISMNAL 286 (788)
Q Consensus 224 l~~L~~L~L~~~~l~~~~~-~~l~~~~~L~~L~L~~n~i~~~~~-~~~~~~l~~L~~L~L~~n~~ 286 (788)
+.+|+++.|.++....... .....|++++.|||+.|-+..-.+ ..+.+.+|+|+.|+++.|++
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl 184 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRL 184 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccc
Confidence 3445555555444432211 233344444455555443331111 11223344444444444443
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.02 E-value=6.5e-11 Score=112.41 Aligned_cols=132 Identities=34% Similarity=0.371 Sum_probs=106.7
Q ss_pred CCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccC
Q 003888 466 CSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSN 545 (788)
Q Consensus 466 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~ 545 (788)
...|+++||++|.|+ .+.+...-.|.++.|++++|.++... .+..+++|+.||+|+|.++.... +-
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~~G-wh---------- 348 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAECVG-WH---------- 348 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhhhh-hH----------
Confidence 367899999999998 56667777899999999999998443 48889999999999998763211 00
Q ss_pred CCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCC
Q 003888 546 NSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHN 625 (788)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N 625 (788)
.-+.+.+.|.|++|.|... ..+..+-+|..||+++|
T Consensus 349 ------------------------------------------~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N 384 (490)
T KOG1259|consen 349 ------------------------------------------LKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSN 384 (490)
T ss_pred ------------------------------------------hhhcCEeeeehhhhhHhhh--hhhHhhhhheecccccc
Confidence 0145889999999998633 46888999999999999
Q ss_pred cCCccC-CccccCCCCCCEEECcCCcccccCC
Q 003888 626 NLTGLI-PSTFSNLKHIESLDLSYNKLNGKIP 656 (788)
Q Consensus 626 ~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p 656 (788)
+|.... -..++++|-|+.+.|.+|++.+ +|
T Consensus 385 ~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~-~v 415 (490)
T KOG1259|consen 385 QIEELDEVNHIGNLPCLETLRLTGNPLAG-SV 415 (490)
T ss_pred chhhHHHhcccccccHHHHHhhcCCCccc-cc
Confidence 998664 3678999999999999999984 44
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.02 E-value=5.7e-10 Score=120.76 Aligned_cols=104 Identities=34% Similarity=0.486 Sum_probs=42.6
Q ss_pred CCCccEEEccCCcCCCCCCCCCCCC-CccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEE
Q 003888 418 LYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHL 496 (788)
Q Consensus 418 l~~L~~L~l~~n~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 496 (788)
.+.++.|++.+|.++...+...... +++.|++++|.+. .++.. +..+++|+.|++++|++.. +|......++|+.|
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~-~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L 191 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSP-LRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNL 191 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhh-hhccccccccccCCchhhh-hhhhhhhhhhhhhe
Confidence 3455555555555554333222221 3333333333331 11111 3444555555555555542 22222234455555
Q ss_pred EccCCcCccccCcccCCCCCCCEEEccCC
Q 003888 497 ILGHNNLEGEVPVQLCELNQLQLLDLSNN 525 (788)
Q Consensus 497 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 525 (788)
++++|++. .+|........|+++.+++|
T Consensus 192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 192 DLSGNKIS-DLPPEIELLSALEELDLSNN 219 (394)
T ss_pred eccCCccc-cCchhhhhhhhhhhhhhcCC
Confidence 55555554 22222222333444444444
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.01 E-value=7.8e-12 Score=128.93 Aligned_cols=176 Identities=30% Similarity=0.444 Sum_probs=150.1
Q ss_pred CCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCccccccc
Q 003888 465 HCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESS 544 (788)
Q Consensus 465 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~ 544 (788)
.+..-...|++.|++. .+|..+..+..|+.+.++.|.+. .+|..++++..|..+|++.|+++...+ .+..+
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~-~lC~l------ 143 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPD-GLCDL------ 143 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCCh-hhhcC------
Confidence 3445567899999998 67888888899999999999998 788899999999999999999874332 22221
Q ss_pred CCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCC
Q 003888 545 NNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSH 624 (788)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 624 (788)
-|+.|-+++|+++ .+|..++.+..|..||.+.
T Consensus 144 -----------------------------------------------pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~ 175 (722)
T KOG0532|consen 144 -----------------------------------------------PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSK 175 (722)
T ss_pred -----------------------------------------------cceeEEEecCccc-cCCcccccchhHHHhhhhh
Confidence 4888999999998 7888999999999999999
Q ss_pred CcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCCcccccCCCCccccCCCCCCC
Q 003888 625 NNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC 701 (788)
Q Consensus 625 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~gn~~~c 701 (788)
|.+..+ |..+.++.+|+.|+++.|++. .+|+++..+ .|..||++.|+++ .+|-.|..+..+..+.++.||..-
T Consensus 176 nei~sl-psql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 176 NEIQSL-PSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hhhhhc-hHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence 999954 677899999999999999998 677777754 5889999999999 788889999999999999999743
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.98 E-value=7.3e-10 Score=119.92 Aligned_cols=102 Identities=35% Similarity=0.513 Sum_probs=53.1
Q ss_pred EEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCC-CCCEEEccCCcCCCCCcccccCCCCCCEEeCCCC
Q 003888 327 FLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCS-SLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPEN 405 (788)
Q Consensus 327 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n 405 (788)
.+++..+.+.... ..+...+.++.|++.+|.++ .++....... +|+.|++++|.+. ..+..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 4555555553211 22233455666666666666 3344344442 6666666666665 33344555666666666666
Q ss_pred cccCCccccccCCCCccEEEccCCcCC
Q 003888 406 HLEGPIPVGFCQLYSLQILDISDNNIS 432 (788)
Q Consensus 406 ~~~~~~~~~~~~l~~L~~L~l~~n~~~ 432 (788)
++.. .+......+.|+.|++++|++.
T Consensus 174 ~l~~-l~~~~~~~~~L~~L~ls~N~i~ 199 (394)
T COG4886 174 DLSD-LPKLLSNLSNLNNLDLSGNKIS 199 (394)
T ss_pred hhhh-hhhhhhhhhhhhheeccCCccc
Confidence 6552 2332334555555555555554
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.94 E-value=7.3e-10 Score=127.66 Aligned_cols=132 Identities=20% Similarity=0.251 Sum_probs=81.5
Q ss_pred CCCCCCccEEEcccCCcccccchhHHHhhcCCCCcEEeCCCCC--CCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCCh
Q 003888 15 FPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDST--LGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPW 92 (788)
Q Consensus 15 l~~~~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~--l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 92 (788)
..+....|...+ -++.+... +.+ ..++.|+.|-+.+|. + ..++...|..++.|++|||++|.--+.+|+
T Consensus 519 ~~~~~~~rr~s~--~~~~~~~~-~~~--~~~~~L~tLll~~n~~~l----~~is~~ff~~m~~LrVLDLs~~~~l~~LP~ 589 (889)
T KOG4658|consen 519 VKSWNSVRRMSL--MNNKIEHI-AGS--SENPKLRTLLLQRNSDWL----LEISGEFFRSLPLLRVLDLSGNSSLSKLPS 589 (889)
T ss_pred ccchhheeEEEE--eccchhhc-cCC--CCCCccceEEEeecchhh----hhcCHHHHhhCcceEEEECCCCCccCcCCh
Confidence 445556666666 55554322 111 145567777777764 4 445554566777777777777665556777
Q ss_pred hhcCCCCCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEEccCc
Q 003888 93 CLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANN 158 (788)
Q Consensus 93 ~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n 158 (788)
.++.+-+||+|+++++.+. .+|. .++++.+|.+||+..+.-...+ ......+++|++|.+-..
T Consensus 590 ~I~~Li~LryL~L~~t~I~-~LP~-~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 590 SIGELVHLRYLDLSDTGIS-HLPS-GLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRS 652 (889)
T ss_pred HHhhhhhhhcccccCCCcc-ccch-HHHHHHhhheeccccccccccc-cchhhhcccccEEEeecc
Confidence 7777777777777777776 7777 6777777777777766543232 234444677777765443
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.93 E-value=1.1e-10 Score=126.08 Aligned_cols=226 Identities=29% Similarity=0.295 Sum_probs=126.6
Q ss_pred ccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccE
Q 003888 367 LSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQ 446 (788)
Q Consensus 367 l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~ 446 (788)
+..+++|+.|++.+|.+... ...+..+++|++|++++|.|+... .+..++.|+.|++++|.+.....
T Consensus 91 l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~~~---------- 157 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDISG---------- 157 (414)
T ss_pred cccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhccC----------
Confidence 33444455555555544421 111344555555555555554332 23344445555555555542110
Q ss_pred EEccCcccccccCcccccCCCCCcEEEccCCcCCCCCC-ccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCC
Q 003888 447 VHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIP-NWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNN 525 (788)
Q Consensus 447 L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 525 (788)
+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+... ..+..+..+..+++..|
T Consensus 158 ----------------~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n 218 (414)
T KOG0531|consen 158 ----------------LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDN 218 (414)
T ss_pred ----------------CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccc
Confidence 3335566666666666654333 1 35566666777777766522 22333444444466666
Q ss_pred cCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccc--cccEEECCCCcc
Q 003888 526 NLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLS--LLSGLDLSCNKL 603 (788)
Q Consensus 526 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~L~~L~Ls~n~l 603 (788)
.++...+... +. .|+.+++++|++
T Consensus 219 ~i~~~~~l~~------------------------------------------------------~~~~~L~~l~l~~n~i 244 (414)
T KOG0531|consen 219 KISKLEGLNE------------------------------------------------------LVMLHLRELYLSGNRI 244 (414)
T ss_pred cceeccCccc------------------------------------------------------chhHHHHHHhcccCcc
Confidence 6542211100 11 277788888887
Q ss_pred cccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCccccc---CCcc-ccCCCCCCEEEccCCcCcccC
Q 003888 604 IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGK---IPHQ-LVELKTLAVFSVAYNNLSGEI 679 (788)
Q Consensus 604 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~p~~-l~~l~~L~~L~l~~N~l~~~~ 679 (788)
. ..+..+..+..+..|++++|++... ..+...+.+..+....|.+... .... ....+.++...+.+|+.....
T Consensus 245 ~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 245 S-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred c-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccccc
Confidence 7 3335677788888888888888865 5566777888888888887521 1111 455678888888888887665
Q ss_pred CC
Q 003888 680 PE 681 (788)
Q Consensus 680 p~ 681 (788)
+.
T Consensus 322 ~~ 323 (414)
T KOG0531|consen 322 SL 323 (414)
T ss_pred cc
Confidence 53
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.92 E-value=8.6e-10 Score=83.11 Aligned_cols=60 Identities=50% Similarity=0.674 Sum_probs=35.7
Q ss_pred cccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcc
Q 003888 592 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKL 651 (788)
Q Consensus 592 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 651 (788)
+|++|++++|++....+..|.++++|++|++++|+++.+.++.|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455666666666655555566666666666666666655555666666666666666553
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.91 E-value=2e-10 Score=112.06 Aligned_cols=234 Identities=18% Similarity=0.174 Sum_probs=117.7
Q ss_pred ccCCCCCCEEEcCCCcCCCCCchhHh---hcCCCCCEEEcCCCcccc----cC-------ccCcCCCCCccEEEcccCcC
Q 003888 196 LYHQHDLEDVRLSHVNMDGEFPNWLL---ENNTKLRQLYLVNDSLTG----PF-------RLPIHSHRWLRFLDVSNNNF 261 (788)
Q Consensus 196 l~~~~~L~~L~l~~~~~~~~~~~~~~---~~l~~L~~L~L~~~~l~~----~~-------~~~l~~~~~L~~L~L~~n~i 261 (788)
+..+..++.+++++|.+......++. ...++|+..++++- ++| .+ ..++..+++|+++|||+|-+
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 34456666666666666554443332 23344454444432 111 11 22445556677777777766
Q ss_pred cccCChhhh---hcCCCCcEEEcccCcCCCCC-------------cccccCCCCCCEEEcccCcCCCccch----HHHhc
Q 003888 262 QGHIPVEIG---DILPSLISFNISMNALDSSI-------------PSSFGNMNFLQILDLSNNQLTGEIPE----HLAVS 321 (788)
Q Consensus 262 ~~~~~~~~~---~~l~~L~~L~L~~n~~~~~~-------------~~~~~~l~~L~~L~l~~n~i~~~i~~----~~~~~ 321 (788)
.-..+..+. +.+..|++|.|.+|.+...- ..-.+.-+.|+++...+|++. ..+. ..+..
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle-n~ga~~~A~~~~~ 183 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE-NGGATALAEAFQS 183 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc-cccHHHHHHHHHh
Confidence 533333332 22456777777777654211 111233466777777777665 2221 22334
Q ss_pred CCCCCEEEccCccCCCcC----cccCcCCCCCCEEeccCCcCCCc----CCccccCCCCCCEEEccCCcCCCCCcccc--
Q 003888 322 CVNLEFLALSNNNLKGHM----FSRNFNLTNLRSLQLEGNHLEGE----IPQSLSKCSSLEGLYLNNNSLSGKIPRWL-- 391 (788)
Q Consensus 322 l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~~~~~~-- 391 (788)
.+.|+.+.+..|.|.... ...+..+++|+.|+|.+|-++.. +..++..+++|+.|++++|.+.......|
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~ 263 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD 263 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence 566666666666654322 12344566666666666655532 22344455566666666665554333222
Q ss_pred ---cCCCCCCEEeCCCCcccCCc----cccccCCCCccEEEccCCcC
Q 003888 392 ---GNLTGLKHIIMPENHLEGPI----PVGFCQLYSLQILDISDNNI 431 (788)
Q Consensus 392 ---~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~l~~n~~ 431 (788)
...|.|+.+.+.+|.++... ...+...+.|+.|++++|.+
T Consensus 264 al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 264 ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 12455666666666554321 12233345556666666655
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.90 E-value=9.9e-10 Score=82.75 Aligned_cols=61 Identities=39% Similarity=0.631 Sum_probs=58.0
Q ss_pred ccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcC
Q 003888 615 TRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNL 675 (788)
Q Consensus 615 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l 675 (788)
++|++|++++|+++.+.++.|.++++|++|++++|+++...|..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5799999999999999889999999999999999999988889999999999999999985
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.80 E-value=6.5e-09 Score=119.93 Aligned_cols=272 Identities=24% Similarity=0.258 Sum_probs=163.5
Q ss_pred cCCCCCEEEcCCCcccccCccCcCCCCCccEEEcccCc--CcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCC
Q 003888 223 NNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNN--FQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFL 300 (788)
Q Consensus 223 ~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~n~--i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 300 (788)
+....+...+-++.+..... -..+++|++|-+.+|. +. .++..++..+|.|++||+++|.--+.+|..++++-+|
T Consensus 521 ~~~~~rr~s~~~~~~~~~~~--~~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHIAG--SSENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred chhheeEEEEeccchhhccC--CCCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 33556666666666543221 2234578888888886 44 7888888889999999999988778899999999999
Q ss_pred CEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCC--CcCCccccCCCCCCEEEc
Q 003888 301 QILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLE--GEIPQSLSKCSSLEGLYL 378 (788)
Q Consensus 301 ~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~L 378 (788)
++|++++..+. .+|..+. ++..|.+|++..+.-....+.....+++|++|.+...... ...-..+..+.+|+.+..
T Consensus 598 ryL~L~~t~I~-~LP~~l~-~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 598 RYLDLSDTGIS-HLPSGLG-NLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hcccccCCCcc-ccchHHH-HHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 99999999998 8999987 6899999999987665555666667899999998776422 122233344555555554
Q ss_pred cCCcCCCCCcccccCCCCCC----EEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCC-------CCCccEE
Q 003888 379 NNNSLSGKIPRWLGNLTGLK----HIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFH-------PLSIEQV 447 (788)
Q Consensus 379 ~~n~i~~~~~~~~~~l~~L~----~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-------~~~L~~L 447 (788)
..... .....+..++.|. .+.+.++... ..+..+..+.+|+.|.+.++.+.+....... ++++..+
T Consensus 676 ~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~ 752 (889)
T KOG4658|consen 676 TISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKV 752 (889)
T ss_pred ecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHH
Confidence 33322 1112233333333 3333332222 3345567788888888888877643322211 1123333
Q ss_pred EccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCc
Q 003888 448 HLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLE 504 (788)
Q Consensus 448 ~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 504 (788)
.+.++......... ...++|+.|.+..+.....+......+..+..+.+..+.+.
T Consensus 753 ~~~~~~~~r~l~~~--~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 753 SILNCHMLRDLTWL--LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLE 807 (889)
T ss_pred Hhhccccccccchh--hccCcccEEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence 33333221222111 12356666666666554444444444444544444444443
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.78 E-value=6.8e-10 Score=120.06 Aligned_cols=218 Identities=28% Similarity=0.294 Sum_probs=142.8
Q ss_pred CCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEE
Q 003888 369 KCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVH 448 (788)
Q Consensus 369 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~ 448 (788)
.+..++.+.++.|.+.. ....+..+++|+.+++.+|.+..+.. .+..+++|++|++++|.|+...+
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~------------ 135 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEG------------ 135 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccccc------------
Confidence 44556666677776653 23345667777788888887774422 25667777777777777763321
Q ss_pred ccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccC-cccCCCCCCCEEEccCCcC
Q 003888 449 LSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVP-VQLCELNQLQLLDLSNNNL 527 (788)
Q Consensus 449 l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~i 527 (788)
+..++.|+.|++++|.+... ..+..++.|+.+++++|.+....+ . ...+.+++.+.+.+|.+
T Consensus 136 --------------l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 136 --------------LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred --------------hhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence 44556688888888888743 345567888888888888875443 2 46777888888888877
Q ss_pred CCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccC
Q 003888 528 HGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHI 607 (788)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 607 (788)
....... .+..+..+++..|.++...
T Consensus 199 ~~i~~~~------------------------------------------------------~~~~l~~~~l~~n~i~~~~ 224 (414)
T KOG0531|consen 199 REIEGLD------------------------------------------------------LLKKLVLLSLLDNKISKLE 224 (414)
T ss_pred hcccchH------------------------------------------------------HHHHHHHhhcccccceecc
Confidence 5321110 0123445577788877443
Q ss_pred cccccCccc--CCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCc
Q 003888 608 PPQIGNLTR--IQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLS 676 (788)
Q Consensus 608 ~~~l~~l~~--L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 676 (788)
+ +..+.. |+.+++++|++... +..+..+..+..|++++|++... ..+...+.+..+....|++.
T Consensus 225 ~--l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 225 G--LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred C--cccchhHHHHHHhcccCccccc-cccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence 3 223333 88899999988854 36677788889999999988743 23455566667777777765
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=2.7e-09 Score=101.66 Aligned_cols=109 Identities=21% Similarity=0.157 Sum_probs=65.2
Q ss_pred CCCCEEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCcccccCccCcCCCCCccEEEcccCc-CcccCChhhhhcCCCCcE
Q 003888 200 HDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNN-FQGHIPVEIGDILPSLIS 278 (788)
Q Consensus 200 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~n~-i~~~~~~~~~~~l~~L~~ 278 (788)
+.++.+|++...++..-...++..|++|+.|.+.++++.+.+...+.+-.+|+.++++.+. ++.....-++..++.|.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 4477778877776655555556777788888888887777777777777777777777653 332222233444666667
Q ss_pred EEcccCcCCCCCcc-cccC-CCCCCEEEcccC
Q 003888 279 FNISMNALDSSIPS-SFGN-MNFLQILDLSNN 308 (788)
Q Consensus 279 L~L~~n~~~~~~~~-~~~~-l~~L~~L~l~~n 308 (788)
|++++|......-. ...+ -++|+.|+++++
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~ 296 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGY 296 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhh
Confidence 77776655432111 1111 134555555554
No 44
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.46 E-value=2.9e-08 Score=93.49 Aligned_cols=223 Identities=18% Similarity=0.206 Sum_probs=127.2
Q ss_pred HHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCC---CCcC-------CChhhcCCCCCCEEECCCC
Q 003888 39 QIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNND---LRGS-------LPWCLANMTSLRILDVSSN 108 (788)
Q Consensus 39 ~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~---l~~~-------~~~~l~~l~~L~~L~Ls~n 108 (788)
+.+. .+..+..+|||+|.|++-...-....+++-.+|++.+++.-- ..+. +..++-+|++|+..+||.|
T Consensus 24 eel~-~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 24 EELE-MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred HHHH-hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 3455 578888999999988531111122345667788888877532 2222 3345678899999999999
Q ss_pred cCcCcCCh---hhhcCCCCCCEEECcCccccccCCccc-------------cccCCCCcEEEccCccccccccccccCCC
Q 003888 109 QLTGSISS---SPLVHLTSIEELMLSNNHFQIPISLEP-------------LFNHSRLKIFDAANNEIKAEITESHSLTA 172 (788)
Q Consensus 109 ~~~~~i~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~~-------------l~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 172 (788)
.+.-..|+ ..+++-+.|+||.+++|.+- .+..+. .++-+.|+.+.+..|++........
T Consensus 103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~---- 177 (388)
T COG5238 103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELS---- 177 (388)
T ss_pred ccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHH----
Confidence 88755554 24567789999999998763 222221 2344667777777776543211110
Q ss_pred CcccccEEEccCCCCCCCCcCccccCCCCCCEEEcCCCcCCCCCchhH----hhcCCCCCEEEcCCCcccccC----ccC
Q 003888 173 PNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWL----LENNTKLRQLYLVNDSLTGPF----RLP 244 (788)
Q Consensus 173 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~----~~~l~~L~~L~L~~~~l~~~~----~~~ 244 (788)
...+..-..|+++.+..|.+.......+ +..+.+|+.|++.+|.++... ..+
T Consensus 178 --------------------a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~a 237 (388)
T COG5238 178 --------------------AALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADA 237 (388)
T ss_pred --------------------HHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHH
Confidence 1112222466777777776654322211 124566777777776665322 223
Q ss_pred cCCCCCccEEEcccCcCcccCChhhhh-----cCCCCcEEEcccCcCC
Q 003888 245 IHSHRWLRFLDVSNNNFQGHIPVEIGD-----ILPSLISFNISMNALD 287 (788)
Q Consensus 245 l~~~~~L~~L~L~~n~i~~~~~~~~~~-----~l~~L~~L~L~~n~~~ 287 (788)
+...+.|+.|.+.+|-++.....+++. ..|+|..|-..+|.+.
T Consensus 238 l~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 238 LCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred hcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 344455666666666655444333332 1355555555555543
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.5e-09 Score=103.47 Aligned_cols=183 Identities=21% Similarity=0.131 Sum_probs=116.2
Q ss_pred CCCEEEcCCCCCCcC-CChhhcCCCCCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCcc-ccccCCccccccCCCCcE
Q 003888 75 HLQELYIDNNDLRGS-LPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH-FQIPISLEPLFNHSRLKI 152 (788)
Q Consensus 75 ~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~l~~l~~L~~ 152 (788)
.|++||||+..|+.. +-..++.|.+|+.|.+.++++.+.|-. .+.+-.+|+.||++.+. ++.....-.+.+|+.|.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 477888887776632 333466778888888888888766665 67777788888887764 221111124567788888
Q ss_pred EEccCccccccccccccCCCCcccccEEEccCCCCCCC---CcCccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCE
Q 003888 153 FDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGV---TFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQ 229 (788)
Q Consensus 153 L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 229 (788)
|++++|....+.......... ..++.|++ +++.-.- .+..--..+++|..||++.+.....-....+.+++.|++
T Consensus 265 LNlsWc~l~~~~Vtv~V~his-e~l~~LNl-sG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHIS-ETLTQLNL-SGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH 342 (419)
T ss_pred cCchHhhccchhhhHHHhhhc-hhhhhhhh-hhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence 888888766544222211111 26777777 5443211 122223478999999999886433222233458899999
Q ss_pred EEcCCCccc-ccCccCcCCCCCccEEEcccCc
Q 003888 230 LYLVNDSLT-GPFRLPIHSHRWLRFLDVSNNN 260 (788)
Q Consensus 230 L~L~~~~l~-~~~~~~l~~~~~L~~L~L~~n~ 260 (788)
|.++.|... ......+...+.|.+||..++-
T Consensus 343 lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 343 LSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 999988633 2223356788999999998763
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.44 E-value=1.2e-08 Score=108.55 Aligned_cols=111 Identities=27% Similarity=0.325 Sum_probs=87.2
Q ss_pred cccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCE
Q 003888 588 KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAV 667 (788)
Q Consensus 588 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 667 (788)
..++.++.|||++|+++... .+..++.|++|||++|.++...--...++. |+.|.+++|.++.. ..+.++.+|+.
T Consensus 184 qll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~ 258 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYG 258 (1096)
T ss_pred HHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhc
Confidence 34778999999999998654 789999999999999999965433444444 99999999999843 46789999999
Q ss_pred EEccCCcCcccC-CCcccccCCCCccccCCCCCCCCC
Q 003888 668 FSVAYNNLSGEI-PEWTAQFATFNESSYEGNTFLCGL 703 (788)
Q Consensus 668 L~l~~N~l~~~~-p~~~~~~~~~~~~~~~gn~~~c~~ 703 (788)
||+++|-|.+-- -..+..+..+..+.++|||.-|..
T Consensus 259 LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 259 LDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred cchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 999999887521 112335566778899999988854
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=8.9e-08 Score=91.51 Aligned_cols=86 Identities=22% Similarity=0.332 Sum_probs=51.7
Q ss_pred CCCCCCEEEcCCCCCCc--CCChhhcCCCCCCEEECCCCcCcCcCChhhh-cCCCCCCEEECcCccccccCCccccccCC
Q 003888 72 SLMHLQELYIDNNDLRG--SLPWCLANMTSLRILDVSSNQLTGSISSSPL-VHLTSIEELMLSNNHFQIPISLEPLFNHS 148 (788)
Q Consensus 72 ~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~ 148 (788)
..++++.+||.+|.|++ ++...+.++|.|+.|+++.|++...|.. + ..+.+|++|-|.+..+.=......+..++
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~--lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS--LPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc--CcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 35667777777777764 2334456777777777777776532222 2 24457777777766554222223456677
Q ss_pred CCcEEEccCcc
Q 003888 149 RLKIFDAANNE 159 (788)
Q Consensus 149 ~L~~L~l~~n~ 159 (788)
.+++|+++.|.
T Consensus 147 ~vtelHmS~N~ 157 (418)
T KOG2982|consen 147 KVTELHMSDNS 157 (418)
T ss_pred hhhhhhhccch
Confidence 77777777763
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.23 E-value=2.8e-08 Score=105.88 Aligned_cols=128 Identities=24% Similarity=0.324 Sum_probs=95.0
Q ss_pred CccEEEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhhcCCCC
Q 003888 20 SLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTS 99 (788)
Q Consensus 20 ~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 99 (788)
.|.+.+. ++|++.. .-+++. -++.|++|||++|++. ... .+..+++|++|||++|.+....--...++.
T Consensus 165 ~L~~a~f--syN~L~~-mD~SLq-ll~ale~LnLshNk~~----~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~- 233 (1096)
T KOG1859|consen 165 KLATASF--SYNRLVL-MDESLQ-LLPALESLNLSHNKFT----KVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK- 233 (1096)
T ss_pred hHhhhhc--chhhHHh-HHHHHH-HHHHhhhhccchhhhh----hhH--HHHhcccccccccccchhccccccchhhhh-
Confidence 5566666 7777652 345566 6789999999999883 332 577889999999999998844222344555
Q ss_pred CCEEECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEEccCcccc
Q 003888 100 LRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIK 161 (788)
Q Consensus 100 L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~ 161 (788)
|+.|++++|.++ ++-. +.+|.+|+.||+++|-+.+.-....+..+..|+.|.+.||.+-
T Consensus 234 L~~L~lrnN~l~-tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 234 LQLLNLRNNALT-TLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred heeeeecccHHH-hhhh--HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 999999999887 5554 7888899999999998876555556677788888899888765
No 49
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.18 E-value=9.6e-08 Score=95.80 Aligned_cols=109 Identities=15% Similarity=-0.005 Sum_probs=51.8
Q ss_pred CCcEEeCCCCCCCCCCCCCCcccc-cCCCCCCEEEcCCCC-CCcCCChhh-cCCCCCCEEECCCC-cCcCcCChhhhcCC
Q 003888 47 SLKYLSMSDSTLGTNSSRILDQGL-CSLMHLQELYIDNND-LRGSLPWCL-ANMTSLRILDVSSN-QLTGSISSSPLVHL 122 (788)
Q Consensus 47 ~L~~L~Ls~~~l~~~~~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~~~~~l-~~l~~L~~L~Ls~n-~~~~~i~~~~l~~l 122 (788)
.|+.|.++++.-. +.-+-..+ .+++++++|++.+|. +++..-..+ ..|++|++|+|..| .++...-......+
T Consensus 139 ~lk~LSlrG~r~v---~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC 215 (483)
T KOG4341|consen 139 FLKELSLRGCRAV---GDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC 215 (483)
T ss_pred ccccccccccccC---CcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence 5666666666432 11111122 356666776666665 332211122 35667777777664 23311111123456
Q ss_pred CCCCEEECcCcc-ccccCCccccccCCCCcEEEccCc
Q 003888 123 TSIEELMLSNNH-FQIPISLEPLFNHSRLKIFDAANN 158 (788)
Q Consensus 123 ~~L~~L~Ls~n~-l~~~~~~~~l~~l~~L~~L~l~~n 158 (788)
++|++|+++.+. +++.--.....+++.++++...||
T Consensus 216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC 252 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC 252 (483)
T ss_pred hhHHHhhhccCchhhcCcchHHhccchhhhhhhhccc
Confidence 777777777664 222111123345555555555544
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=5.4e-07 Score=86.30 Aligned_cols=221 Identities=20% Similarity=0.163 Sum_probs=112.9
Q ss_pred CCEEEcccCcCCCccc-hHHHhcCCCCCEEEccCccCCCcC--cccCcCCCCCCEEeccCCcCCCcCCccc-cCCCCCCE
Q 003888 300 LQILDLSNNQLTGEIP-EHLAVSCVNLEFLALSNNNLKGHM--FSRNFNLTNLRSLQLEGNHLEGEIPQSL-SKCSSLEG 375 (788)
Q Consensus 300 L~~L~l~~n~i~~~i~-~~~~~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~ 375 (788)
++.+.+.++.|..... ..+...++.++++||.+|.|+... ...+.++|.|+.|+++.|++...+. .+ ....+|+.
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl~~ 125 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNLRV 125 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccceEE
Confidence 4445555554432211 223334667777777777776532 1223467777777777777663322 22 34567777
Q ss_pred EEccCCcCCCC-CcccccCCCCCCEEeCCCCcccCC--ccccccCC-CCccEEEccCCcCCC---CCCCCCCCCCccEEE
Q 003888 376 LYLNNNSLSGK-IPRWLGNLTGLKHIIMPENHLEGP--IPVGFCQL-YSLQILDISDNNISG---SLPSCFHPLSIEQVH 448 (788)
Q Consensus 376 L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l-~~L~~L~l~~n~~~~---~~~~~~~~~~L~~L~ 448 (788)
|-|.+..+.-. ....+..+|.+++|.++.|..... ........ +.++++....|.... ...-.-.++++..+.
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~ 205 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF 205 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence 77777665422 223345567777777777733211 11111111 244444444432110 000000134555566
Q ss_pred ccCcccccccCcccccCCCCCcEEEccCCcCCCC-CCccccCCCCCCEEEccCCcCccccCc------ccCCCCCCCEEE
Q 003888 449 LSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGS-IPNWVDGLSQLSHLILGHNNLEGEVPV------QLCELNQLQLLD 521 (788)
Q Consensus 449 l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~------~l~~l~~L~~L~ 521 (788)
+..|.+...-....+..++.+.-|+|+.+++..- .-+.+.++++|..|.++++.+.+..-. .++.+++++.|+
T Consensus 206 v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 206 VCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred eecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 6666554443333355556666777777776532 123456677777777777776533221 144566666655
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.03 E-value=5.6e-06 Score=56.74 Aligned_cols=36 Identities=36% Similarity=0.609 Sum_probs=18.2
Q ss_pred CCCEEEcCCCCCCcCCChhhcCCCCCCEEECCCCcCc
Q 003888 75 HLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT 111 (788)
Q Consensus 75 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~ 111 (788)
+|++|++++|+|+ .+|..+++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 33434555555555555555554
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.00 E-value=3.5e-07 Score=77.24 Aligned_cols=102 Identities=21% Similarity=0.320 Sum_probs=58.3
Q ss_pred ccEEECCCCcccccCcc---cccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEE
Q 003888 593 LSGLDLSCNKLIGHIPP---QIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFS 669 (788)
Q Consensus 593 L~~L~Ls~n~l~~~~~~---~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 669 (788)
+..+||+.|++. .++. .+.....|+..+|++|.+....+..-...+.++.|++++|.|+ .+|.+++.++.|+.++
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 455666666654 2222 2334445555677777666554444444456667777777776 5666666777777777
Q ss_pred ccCCcCcccCCCcccccCCCCccccCCC
Q 003888 670 VAYNNLSGEIPEWTAQFATFNESSYEGN 697 (788)
Q Consensus 670 l~~N~l~~~~p~~~~~~~~~~~~~~~gn 697 (788)
+++|++.. .|..+.++.++..++..+|
T Consensus 107 l~~N~l~~-~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 107 LRFNPLNA-EPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred cccCcccc-chHHHHHHHhHHHhcCCCC
Confidence 77777663 3333444555555554444
No 53
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.99 E-value=4.1e-07 Score=91.40 Aligned_cols=300 Identities=17% Similarity=0.116 Sum_probs=168.3
Q ss_pred CccEEEcccCCcccccch-hHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccc-cCCCCCCEEEcCCCC-CCcCCCh-hhc
Q 003888 20 SLDHLDMVFARTALNTSF-LQIIRESMPSLKYLSMSDSTLGTNSSRILDQGL-CSLMHLQELYIDNND-LRGSLPW-CLA 95 (788)
Q Consensus 20 ~L~~L~L~~~~~~~~~~~-~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~~~~-~l~ 95 (788)
.|+.|.+ .+++-.+.- ...+...++++++|++.++...+ ..... .+ ..+++|++|+|..|. +++..-. -..
T Consensus 139 ~lk~LSl--rG~r~v~~sslrt~~~~CpnIehL~l~gc~~iT--d~s~~-sla~~C~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 139 FLKELSL--RGCRAVGDSSLRTFASNCPNIEHLALYGCKKIT--DSSLL-SLARYCRKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred ccccccc--cccccCCcchhhHHhhhCCchhhhhhhcceecc--HHHHH-HHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence 5777777 777654432 23344478888888888876421 11111 22 357788888888864 4433222 234
Q ss_pred CCCCCCEEECCCCc-CcC-cCChhhhcCCCCCCEEECcCccccccCCcccc----ccCCCCcEEEccCcccccccccccc
Q 003888 96 NMTSLRILDVSSNQ-LTG-SISSSPLVHLTSIEELMLSNNHFQIPISLEPL----FNHSRLKIFDAANNEIKAEITESHS 169 (788)
Q Consensus 96 ~l~~L~~L~Ls~n~-~~~-~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l----~~l~~L~~L~l~~n~~~~~~~~~~~ 169 (788)
.+++|++|+++.+. +++ .+.. ...++..++.+.+.+|.- .+.+.+ +.+..+.++++..+....+.. ...
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~-~~rG~~~l~~~~~kGC~e---~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~-~~~ 288 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQA-LQRGCKELEKLSLKGCLE---LELEALLKAAAYCLEILKLNLQHCNQLTDED-LWL 288 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchH-Hhccchhhhhhhhccccc---ccHHHHHHHhccChHhhccchhhhccccchH-HHH
Confidence 67888888888774 332 1222 355666677776665531 111111 233444555544443221111 111
Q ss_pred CCCCcccccEEEccCCCCCCCC-cCccc-cCCCCCCEEEcCCCc-CCCCCchhHhhcCCCCCEEEcCCCccc--ccCccC
Q 003888 170 LTAPNFQLQALSLSSGYGDGVT-FPKFL-YHQHDLEDVRLSHVN-MDGEFPNWLLENNTKLRQLYLVNDSLT--GPFRLP 244 (788)
Q Consensus 170 ~~~~~~~L~~L~l~~~~~~~~~-~~~~l-~~~~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~L~~~~l~--~~~~~~ 244 (788)
.......++.+.. .++...+. .-..+ .+.++|+.+.+++|+ ++...-..+..+++.|+.+++..+... +.+...
T Consensus 289 i~~~c~~lq~l~~-s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl 367 (483)
T KOG4341|consen 289 IACGCHALQVLCY-SSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASL 367 (483)
T ss_pred HhhhhhHhhhhcc-cCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhh
Confidence 1122235666666 33332222 22223 467889999999887 333333344467889999999887654 234445
Q ss_pred cCCCCCccEEEcccCcC-cccC---ChhhhhcCCCCcEEEcccCcCC-CCCcccccCCCCCCEEEcccCcCCCc-cchHH
Q 003888 245 IHSHRWLRFLDVSNNNF-QGHI---PVEIGDILPSLISFNISMNALD-SSIPSSFGNMNFLQILDLSNNQLTGE-IPEHL 318 (788)
Q Consensus 245 l~~~~~L~~L~L~~n~i-~~~~---~~~~~~~l~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~l~~n~i~~~-i~~~~ 318 (788)
-..++.|+.+.++.+.. ++.. -......+..+..+.+++++.. ......+..+++|+.+++.+++-... --..+
T Consensus 368 s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~ 447 (483)
T KOG4341|consen 368 SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRF 447 (483)
T ss_pred ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHH
Confidence 56788999999998753 2220 0111223568999999998754 33344577889999999988853212 22233
Q ss_pred HhcCCCCCEEEc
Q 003888 319 AVSCVNLEFLAL 330 (788)
Q Consensus 319 ~~~l~~L~~L~L 330 (788)
...+|+++...+
T Consensus 448 ~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 448 ATHLPNIKVHAY 459 (483)
T ss_pred HhhCccceehhh
Confidence 345666665443
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.96 E-value=2.9e-07 Score=77.79 Aligned_cols=59 Identities=27% Similarity=0.479 Sum_probs=27.8
Q ss_pred cCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCc
Q 003888 616 RIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLS 676 (788)
Q Consensus 616 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 676 (788)
..+.|++++|+|++. |..+..++.|+.|+++.|++. ..|+-+..+.+|-.|+..+|...
T Consensus 78 t~t~lNl~~neisdv-PeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 78 TATTLNLANNEISDV-PEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hhhhhhcchhhhhhc-hHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 444455555555432 333444555555555555544 34444444444445554444443
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.94 E-value=1.6e-06 Score=97.80 Aligned_cols=108 Identities=25% Similarity=0.367 Sum_probs=55.9
Q ss_pred CCCcEEeCCCCCCCCCCCCCCccccc-CCCCCCEEEcCCCCCCcC-CChhhcCCCCCCEEECCCCcCcCcCChhhhcCCC
Q 003888 46 PSLKYLSMSDSTLGTNSSRILDQGLC-SLMHLQELYIDNNDLRGS-LPWCLANMTSLRILDVSSNQLTGSISSSPLVHLT 123 (788)
Q Consensus 46 ~~L~~L~Ls~~~l~~~~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~ 123 (788)
.+|++||+++.... ..-.+..++ .+|+|+.|.+++-.+... ......++++|..||+|+++++ .+. .+++|+
T Consensus 122 ~nL~~LdI~G~~~~---s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl~--GIS~Lk 195 (699)
T KOG3665|consen 122 QNLQHLDISGSELF---SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NLS--GISRLK 195 (699)
T ss_pred HhhhhcCccccchh---hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-CcH--HHhccc
Confidence 46666666664432 111111232 366666666666554322 2233445666666666666665 442 366666
Q ss_pred CCCEEECcCccccccCCccccccCCCCcEEEccCcc
Q 003888 124 SIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNE 159 (788)
Q Consensus 124 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~ 159 (788)
+|++|.+.+=.+........+-++++|+.||+|...
T Consensus 196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 666666655444432222345556666666666543
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.93 E-value=2e-05 Score=71.73 Aligned_cols=131 Identities=23% Similarity=0.330 Sum_probs=82.6
Q ss_pred CcEEeCCCCCCCCCCCCCCccccc-CCCCCCEEEcCCCCCCcCCChhhcCCCCCCEEECCCCcCcCcCChhhhcCCCCCC
Q 003888 48 LKYLSMSDSTLGTNSSRILDQGLC-SLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIE 126 (788)
Q Consensus 48 L~~L~Ls~~~l~~~~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~ 126 (788)
=+.++|.+.++. .+.. ++ -+.....+||++|++... ..|..+++|..|.|++|.|+ .|....-.-+++|+
T Consensus 21 e~e~~LR~lkip----~ien--lg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~ 91 (233)
T KOG1644|consen 21 ERELDLRGLKIP----VIEN--LGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLK 91 (233)
T ss_pred cccccccccccc----chhh--ccccccccceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccc
Confidence 345666665552 2221 22 234566788888877643 34777788888888888887 66653334466788
Q ss_pred EEECcCccccccCCccccccCCCCcEEEccCccccccccccccCCCCcccccEEEccCCCCCCCCcCccccCCCCCCEEE
Q 003888 127 ELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVR 206 (788)
Q Consensus 127 ~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 206 (788)
.|.+.+|.+........+..|++|++|.+-+|++... .++. -..+..+++|+.||
T Consensus 92 ~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k--------------------~~YR-----~yvl~klp~l~~LD 146 (233)
T KOG1644|consen 92 TLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHK--------------------KNYR-----LYVLYKLPSLRTLD 146 (233)
T ss_pred eEEecCcchhhhhhcchhccCCccceeeecCCchhcc--------------------cCce-----eEEEEecCcceEee
Confidence 8888888877444445677788888888888876531 1111 12345677888888
Q ss_pred cCCCcC
Q 003888 207 LSHVNM 212 (788)
Q Consensus 207 l~~~~~ 212 (788)
.++...
T Consensus 147 F~kVt~ 152 (233)
T KOG1644|consen 147 FQKVTR 152 (233)
T ss_pred hhhhhH
Confidence 777543
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.92 E-value=1.3e-06 Score=82.74 Aligned_cols=222 Identities=21% Similarity=0.231 Sum_probs=141.8
Q ss_pred CCCCCCccEEEcccCCcccccch----hHHHhhcCCCCcEEeCCCCCCCCCCCCCCc------ccccCCCCCCEEEcCCC
Q 003888 15 FPHFKSLDHLDMVFARTALNTSF----LQIIRESMPSLKYLSMSDSTLGTNSSRILD------QGLCSLMHLQELYIDNN 84 (788)
Q Consensus 15 l~~~~~L~~L~L~~~~~~~~~~~----~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~------~~~~~l~~L~~L~Ls~n 84 (788)
+..+..+..++| |+|.+..+- +..++ +-++|++-+++.-..+..-..++. .++.++|+|+..+||.|
T Consensus 26 l~~~d~~~evdL--SGNtigtEA~e~l~~~ia-~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 26 LEMMDELVEVDL--SGNTIGTEAMEELCNVIA-NVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred HHhhcceeEEec--cCCcccHHHHHHHHHHHh-hhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 455778899999 999987654 44455 668888888887544211122221 35678999999999999
Q ss_pred CCCcCCChh----hcCCCCCCEEECCCCcCcCcCChhhh-------------cCCCCCCEEECcCccccccC---Ccccc
Q 003888 85 DLRGSLPWC----LANMTSLRILDVSSNQLTGSISSSPL-------------VHLTSIEELMLSNNHFQIPI---SLEPL 144 (788)
Q Consensus 85 ~l~~~~~~~----l~~l~~L~~L~Ls~n~~~~~i~~~~l-------------~~l~~L~~L~Ls~n~l~~~~---~~~~l 144 (788)
.+....|.. ++.-+.|+||.+++|.+. .+...-+ ..-|.|++.....|++.... ....+
T Consensus 103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l 181 (388)
T COG5238 103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALL 181 (388)
T ss_pred ccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHH
Confidence 988665544 567799999999999874 4443222 24578999999999876321 11233
Q ss_pred ccCCCCcEEEccCccccccccccccCCCCcccccEEEccCCCCCCCCcCccccCCCCCCEEEcCCCcCCCCCchhH---h
Q 003888 145 FNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWL---L 221 (788)
Q Consensus 145 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~ 221 (788)
.....|+++.+..|.|.... ++.| +-..+..+++|+.||+..|.++-.....+ +
T Consensus 182 ~sh~~lk~vki~qNgIrpeg------------v~~L-----------~~~gl~y~~~LevLDlqDNtft~~gS~~La~al 238 (388)
T COG5238 182 ESHENLKEVKIQQNGIRPEG------------VTML-----------AFLGLFYSHSLEVLDLQDNTFTLEGSRYLADAL 238 (388)
T ss_pred HhhcCceeEEeeecCcCcch------------hHHH-----------HHHHHHHhCcceeeeccccchhhhhHHHHHHHh
Confidence 34467888888777664210 1111 11234567888888888887664333322 2
Q ss_pred hcCCCCCEEEcCCCcccccCcc----Cc--CCCCCccEEEcccCcCcc
Q 003888 222 ENNTKLRQLYLVNDSLTGPFRL----PI--HSHRWLRFLDVSNNNFQG 263 (788)
Q Consensus 222 ~~l~~L~~L~L~~~~l~~~~~~----~l--~~~~~L~~L~L~~n~i~~ 263 (788)
...+.|++|.+.+|-+...... .+ ...++|..|...+|.+.+
T Consensus 239 ~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 239 CEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred cccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 3345578888888876543221 11 235677778888876654
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.90 E-value=2.6e-05 Score=71.00 Aligned_cols=129 Identities=19% Similarity=0.255 Sum_probs=95.5
Q ss_pred ccEEEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhhcCCCCC
Q 003888 21 LDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSL 100 (788)
Q Consensus 21 L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 100 (788)
=+.++| .+.++.... .++.-......+||++|.+ ..++ .|..++.|.+|.|.+|+|+.+-|.--..+++|
T Consensus 21 e~e~~L--R~lkip~ie--nlg~~~d~~d~iDLtdNdl----~~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l 90 (233)
T KOG1644|consen 21 ERELDL--RGLKIPVIE--NLGATLDQFDAIDLTDNDL----RKLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNL 90 (233)
T ss_pred cccccc--ccccccchh--hccccccccceecccccch----hhcc--cCCCccccceEEecCCcceeeccchhhhcccc
Confidence 456666 665543221 1222346788999999998 5554 48899999999999999998877766678899
Q ss_pred CEEECCCCcCcCcCCh-hhhcCCCCCCEEECcCcccccc--CCccccccCCCCcEEEccCccc
Q 003888 101 RILDVSSNQLTGSISS-SPLVHLTSIEELMLSNNHFQIP--ISLEPLFNHSRLKIFDAANNEI 160 (788)
Q Consensus 101 ~~L~Ls~n~~~~~i~~-~~l~~l~~L~~L~Ls~n~l~~~--~~~~~l~~l~~L~~L~l~~n~~ 160 (788)
+.|.|.+|.+. .+.+ ..+..|++|++|.+-+|..+.. .-.-.+..+++|+.||+..-..
T Consensus 91 ~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 91 KTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred ceEEecCcchh-hhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 99999999987 3332 2478899999999999987622 2223567889999999876543
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.82 E-value=1.5e-05 Score=90.03 Aligned_cols=138 Identities=20% Similarity=0.309 Sum_probs=98.3
Q ss_pred CCccEEEcccCCccc-ccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhhcCC
Q 003888 19 KSLDHLDMVFARTAL-NTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANM 97 (788)
Q Consensus 19 ~~L~~L~L~~~~~~~-~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l 97 (788)
.+|++||+ ++... +..=+..++..+|+|+.|.+++-.+.. .+. ..-..++++|+.||+|++.++.. .+++++
T Consensus 122 ~nL~~LdI--~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~--~dF-~~lc~sFpNL~sLDIS~TnI~nl--~GIS~L 194 (699)
T KOG3665|consen 122 QNLQHLDI--SGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN--DDF-SQLCASFPNLRSLDISGTNISNL--SGISRL 194 (699)
T ss_pred HhhhhcCc--cccchhhccHHHHHhhhCcccceEEecCceecc--hhH-HHHhhccCccceeecCCCCccCc--HHHhcc
Confidence 47888999 77543 222345666689999999999977641 222 22456899999999999999855 789999
Q ss_pred CCCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCccccccC--C---ccccccCCCCcEEEccCcccccc
Q 003888 98 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPI--S---LEPLFNHSRLKIFDAANNEIKAE 163 (788)
Q Consensus 98 ~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~--~---~~~l~~l~~L~~L~l~~n~~~~~ 163 (788)
++|++|.+.+-.+...-.-..+.+|++|++||+|........ . .+--..+++||.||.|+..+...
T Consensus 195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 999999999888762122225788999999999987543211 0 11123478999999998876654
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.80 E-value=1.5e-05 Score=54.63 Aligned_cols=36 Identities=42% Similarity=0.727 Sum_probs=16.5
Q ss_pred cCCeEeCCCCcCCccCCccccCCCCCCEEECcCCccc
Q 003888 616 RIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 652 (788)
Q Consensus 616 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 652 (788)
+|++|++++|+|+.+ |..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDL-PPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCC
Confidence 445555555555533 223455555555555555554
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.70 E-value=7e-05 Score=66.55 Aligned_cols=121 Identities=21% Similarity=0.292 Sum_probs=39.5
Q ss_pred ccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCC
Q 003888 294 FGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSL 373 (788)
Q Consensus 294 ~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 373 (788)
|.++++|+.+.+.. .+. .++...|.++++|+.+.+..+ +..+....|.++++++.+.+.+ .+.......|..++++
T Consensus 8 F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 44444444444442 233 344444444444444444442 4443444444444455555543 2222333344445555
Q ss_pred CEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCc
Q 003888 374 EGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSL 421 (788)
Q Consensus 374 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 421 (788)
+.+++..+ +.......|.++ .++.+.+.. .+..+....|.++++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 55555433 332333344444 555555543 2222333444444443
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.70 E-value=7e-05 Score=66.55 Aligned_cols=122 Identities=24% Similarity=0.281 Sum_probs=47.5
Q ss_pred hhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCC
Q 003888 269 IGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTN 348 (788)
Q Consensus 269 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 348 (788)
.+..+++|+.+.+.. .+..+...+|.++++|+.+.+.++ +. .++...+.++++++.+.+.. .+..+....|..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccc
Confidence 333344555555543 333344445555555555555553 43 55555555555566666643 444444445555666
Q ss_pred CCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCC
Q 003888 349 LRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGL 397 (788)
Q Consensus 349 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 397 (788)
|+.+.+..+ +.......|.++ +++.+.+.. .+.......|.++++|
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 666666543 333444555555 666666654 3333444555555554
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.63 E-value=0.00016 Score=75.24 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=15.7
Q ss_pred ccCCeEeCCCCcCCccCCccccCCCCCCEEECcCC
Q 003888 615 TRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN 649 (788)
Q Consensus 615 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 649 (788)
++|++|++++|.... .|..+. .+|+.|+++.|
T Consensus 156 sSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCccc-Cccccc--ccCcEEEeccc
Confidence 355566665555442 233232 45556665554
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.36 E-value=0.00063 Score=70.88 Aligned_cols=137 Identities=13% Similarity=0.186 Sum_probs=88.5
Q ss_pred ccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCccccc
Q 003888 463 FFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE 542 (788)
Q Consensus 463 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 542 (788)
+..+.+++.|++++|.++ .+|. + .++|++|.+++|.--...|+.+ .++|+.|++++|.-...+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL----------- 110 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL----------- 110 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc-----------
Confidence 345788999999999887 4452 2 2579999998865444666544 258999999988322111
Q ss_pred ccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccc--cCcccccCcccCCeE
Q 003888 543 SSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIG--HIPPQIGNLTRIQTL 620 (788)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L 620 (788)
+++|+.|+++++.... .+| ++|+.|
T Consensus 111 -----------------------------------------------P~sLe~L~L~~n~~~~L~~LP------ssLk~L 137 (426)
T PRK15386 111 -----------------------------------------------PESVRSLEIKGSATDSIKNVP------NGLTSL 137 (426)
T ss_pred -----------------------------------------------ccccceEEeCCCCCcccccCc------chHhhe
Confidence 3467788887766431 233 357778
Q ss_pred eCCCCc-CCc-cCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCc
Q 003888 621 NLSHNN-LTG-LIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNN 674 (788)
Q Consensus 621 ~Ls~N~-l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~ 674 (788)
.+.+++ ... ..|..+ -++|++|++++|... ..|..+. .+|+.|+++.|.
T Consensus 138 ~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 138 SINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred ecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence 775433 111 111111 168999999999876 4454433 589999998874
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.17 E-value=9.7e-05 Score=70.50 Aligned_cols=103 Identities=22% Similarity=0.327 Sum_probs=62.5
Q ss_pred cCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCC--CCCcCCChhhcCCCCCCEEECCCCcCc--CcCChhhh
Q 003888 44 SMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNN--DLRGSLPWCLANMTSLRILDVSSNQLT--GSISSSPL 119 (788)
Q Consensus 44 ~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~l~~l~~L~~L~Ls~n~~~--~~i~~~~l 119 (788)
.+..|+.|++.+..++ ++ ..+-.|++|++|.+|.| ++.+.++--...+++|++|++++|++. .+++ .+
T Consensus 41 ~~~~le~ls~~n~glt----t~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~--pl 112 (260)
T KOG2739|consen 41 EFVELELLSVINVGLT----TL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR--PL 112 (260)
T ss_pred cccchhhhhhhcccee----ec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc--hh
Confidence 5556777777766653 22 23556778888888888 566555555566688888888888775 1222 25
Q ss_pred cCCCCCCEEECcCccccccCC--ccccccCCCCcEEE
Q 003888 120 VHLTSIEELMLSNNHFQIPIS--LEPLFNHSRLKIFD 154 (788)
Q Consensus 120 ~~l~~L~~L~Ls~n~l~~~~~--~~~l~~l~~L~~L~ 154 (788)
..+.+|..|++.+|..+.... -..+.-+++|++|+
T Consensus 113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 666777777777776442110 11234455666554
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.04 E-value=7e-05 Score=83.76 Aligned_cols=61 Identities=30% Similarity=0.240 Sum_probs=26.8
Q ss_pred CCCCcEEEcccCc-CCCCCcccccC-CCCCCEEEcccCc-CCCccchHHHhcCCCCCEEEccCc
Q 003888 273 LPSLISFNISMNA-LDSSIPSSFGN-MNFLQILDLSNNQ-LTGEIPEHLAVSCVNLEFLALSNN 333 (788)
Q Consensus 273 l~~L~~L~L~~n~-~~~~~~~~~~~-l~~L~~L~l~~n~-i~~~i~~~~~~~l~~L~~L~L~~n 333 (788)
+++|+.|+++++. ++...-..++. +++|++|.+.++. +++..-..+...+++|++|+++++
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 4455555555544 33222222222 4555555544444 333333333344555555555544
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=2.5e-05 Score=74.51 Aligned_cols=79 Identities=25% Similarity=0.262 Sum_probs=35.3
Q ss_pred CCCEEEcCCCCCCcCCChhhcCCCCCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEE
Q 003888 75 HLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFD 154 (788)
Q Consensus 75 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~ 154 (788)
+.+.|+..+|+++++ +...+++.|++|.||-|.|+ ++.. +..|++|++|+|..|.|........+.++++|+.|.
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 344444444444433 22334444444444444444 3332 444445555555444444322223344445555554
Q ss_pred ccCc
Q 003888 155 AANN 158 (788)
Q Consensus 155 l~~n 158 (788)
+..|
T Consensus 95 L~EN 98 (388)
T KOG2123|consen 95 LDEN 98 (388)
T ss_pred hccC
Confidence 4444
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.90 E-value=0.00066 Score=64.96 Aligned_cols=90 Identities=22% Similarity=0.255 Sum_probs=69.3
Q ss_pred cccCCCCCCEEEcCCCCCCcCCChhhcCCCCCCEEECCCC--cCcCcCChhhhcCCCCCCEEECcCccccccCCcccccc
Q 003888 69 GLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSN--QLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFN 146 (788)
Q Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n--~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~ 146 (788)
..-.+..|+.|++.+..++.. ..|..+++|+.|++|.| .+++.++. ....+++|++|++++|++...-....+..
T Consensus 38 l~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~ 114 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKE 114 (260)
T ss_pred ccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhh
Confidence 344677888888888887744 34778899999999999 66666666 45677999999999999885444456777
Q ss_pred CCCCcEEEccCcccc
Q 003888 147 HSRLKIFDAANNEIK 161 (788)
Q Consensus 147 l~~L~~L~l~~n~~~ 161 (788)
+.+|..|++..|...
T Consensus 115 l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVT 129 (260)
T ss_pred hcchhhhhcccCCcc
Confidence 888888888877644
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.88 E-value=0.00019 Score=80.22 Aligned_cols=241 Identities=23% Similarity=0.149 Sum_probs=114.8
Q ss_pred cCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCC-CCCcC----CChhhcCCCCCCEEECCCCc-CcCcCChh
Q 003888 44 SMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNN-DLRGS----LPWCLANMTSLRILDVSSNQ-LTGSISSS 117 (788)
Q Consensus 44 ~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~-~~~~i~~~ 117 (788)
.++.|+.|.+.++.-....+ + .......++|+.|+++++ ..... .......+++|+.|+++++. ++ ...-.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~-~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is-d~~l~ 262 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDS-L-DALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT-DIGLS 262 (482)
T ss_pred hCchhhHhhhcccccCChhh-H-HHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC-chhHH
Confidence 46777777777664321101 1 123456677777777662 11111 11233455777777777766 44 22222
Q ss_pred hhc-CCCCCCEEECcCcc-ccccCCccccccCCCCcEEEccCccccccccccccCCCCcccccEEEccCCCCCCCCcCcc
Q 003888 118 PLV-HLTSIEELMLSNNH-FQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKF 195 (788)
Q Consensus 118 ~l~-~l~~L~~L~Ls~n~-l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 195 (788)
.+. .+++|++|.+.++. ++...-.....++++|++|+++++....+..-... .....+++.+.+ ..
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~-~~---------- 330 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKL-LS---------- 330 (482)
T ss_pred HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhh-hh----------
Confidence 232 36677777766665 34222222334566677777776654321111000 111223333332 11
Q ss_pred ccCCCCCCEEEcCCCcCCC--CCchhHhhcCCCCCEEEcCCCcccccC-ccCcCCCCCccEEEcccCcCcccCChhhhhc
Q 003888 196 LYHQHDLEDVRLSHVNMDG--EFPNWLLENNTKLRQLYLVNDSLTGPF-RLPIHSHRWLRFLDVSNNNFQGHIPVEIGDI 272 (788)
Q Consensus 196 l~~~~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~L~~~~l~~~~-~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~ 272 (788)
...+..++.+.+.++.... .........+++++.+.+..+...... ...+..++.|+ ..+.... ..
T Consensus 331 ~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~~----------~~ 399 (482)
T KOG1947|consen 331 LNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELRL----------CR 399 (482)
T ss_pred cCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHHh----------cc
Confidence 1114455555555443322 333444567788888888777744322 23445555552 2211110 11
Q ss_pred CCCCcEEEcccCcCCCCC-cccccC-CCCCCEEEcccCcC
Q 003888 273 LPSLISFNISMNALDSSI-PSSFGN-MNFLQILDLSNNQL 310 (788)
Q Consensus 273 l~~L~~L~L~~n~~~~~~-~~~~~~-l~~L~~L~l~~n~i 310 (788)
...++.|+++.+...... -..... +..++.+++.++..
T Consensus 400 ~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 400 SDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred CCccceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence 223778888777643211 111111 55667777776654
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.61 E-value=9.2e-05 Score=70.71 Aligned_cols=101 Identities=23% Similarity=0.170 Sum_probs=66.0
Q ss_pred CCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhhcCCCCCCEEECCCCcCcCcCCh-hhhcCCC
Q 003888 45 MPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISS-SPLVHLT 123 (788)
Q Consensus 45 l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~i~~-~~l~~l~ 123 (788)
+.+.+.|+.-+|.+. .|. ...+++.|++|.||-|+|+..- .+..|++|++|.|..|.|. ++.+ .-+.+++
T Consensus 18 l~~vkKLNcwg~~L~----DIs--ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlp 88 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD----DIS--ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLP 88 (388)
T ss_pred HHHhhhhcccCCCcc----HHH--HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCc
Confidence 446677777777773 332 1346777888888888777553 3777888888888888776 4443 2357778
Q ss_pred CCCEEECcCccccccCCc----cccccCCCCcEEE
Q 003888 124 SIEELMLSNNHFQIPISL----EPLFNHSRLKIFD 154 (788)
Q Consensus 124 ~L~~L~Ls~n~l~~~~~~----~~l~~l~~L~~L~ 154 (788)
+|++|-|..|.-.+..+. ..+.-+++|++||
T Consensus 89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 888888887765543332 1345567777665
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.57 E-value=0.014 Score=33.10 Aligned_cols=11 Identities=64% Similarity=0.658 Sum_probs=4.5
Q ss_pred CEEECcCCccc
Q 003888 642 ESLDLSYNKLN 652 (788)
Q Consensus 642 ~~L~Ls~N~l~ 652 (788)
++||+++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 34444444443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.31 E-value=0.018 Score=32.60 Aligned_cols=12 Identities=58% Similarity=0.769 Sum_probs=6.5
Q ss_pred CCeEeCCCCcCC
Q 003888 617 IQTLNLSHNNLT 628 (788)
Q Consensus 617 L~~L~Ls~N~l~ 628 (788)
|++|||++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 455555555555
No 73
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=93.51 E-value=0.039 Score=69.88 Aligned_cols=76 Identities=13% Similarity=0.110 Sum_probs=44.9
Q ss_pred ECcCCcccccCCccccCCCCCCEEEccCCcCcccCCC-cccccCCCCccccCCCCCCCCCCCCCCCCCCCCCcccCCCCC
Q 003888 645 DLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPE-WTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNER 723 (788)
Q Consensus 645 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~~~~~~~~~~~gn~~~c~~~l~~c~~~~~~~~~~~~~~~ 723 (788)
||++|+|+...+..|..+++|+.|+|++|++.|.+.- |+.+|..-....+. ......|..|...+++++....
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v~------~~~~i~CasP~~LrG~~L~~l~ 74 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVR------QPEAALCAGPGALAGQPLLGIP 74 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCcccc------CCcccCCCCChHHCCCCcccCC
Confidence 5788888866667777788888888888877765431 22222111111000 0011258888888888776665
Q ss_pred CCC
Q 003888 724 DDN 726 (788)
Q Consensus 724 ~~~ 726 (788)
.++
T Consensus 75 ~~d 77 (2740)
T TIGR00864 75 LLD 77 (2740)
T ss_pred ccc
Confidence 544
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.17 E-value=0.00065 Score=73.66 Aligned_cols=87 Identities=29% Similarity=0.302 Sum_probs=44.5
Q ss_pred CcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChh----hcCC-CCCCEEECCCCcCcCc----CChhh
Q 003888 48 LKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWC----LANM-TSLRILDVSSNQLTGS----ISSSP 118 (788)
Q Consensus 48 L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----l~~l-~~L~~L~Ls~n~~~~~----i~~~~ 118 (788)
+..|.|.+|.+.+.+......++...++|+.|+++.|.+.+..-.. +... ..|++|++..|.+++. +.. .
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~-~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA-V 167 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH-H
Confidence 5566666666653333333334555666666666666665432111 2222 4455566666665521 222 3
Q ss_pred hcCCCCCCEEECcCccc
Q 003888 119 LVHLTSIEELMLSNNHF 135 (788)
Q Consensus 119 l~~l~~L~~L~Ls~n~l 135 (788)
+.....++.+|++.|.+
T Consensus 168 L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGL 184 (478)
T ss_pred HhcccchhHHHHHhccc
Confidence 44455666666666654
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.44 E-value=0.078 Score=27.76 Aligned_cols=11 Identities=64% Similarity=0.939 Sum_probs=3.3
Q ss_pred CCEEECCCCcC
Q 003888 100 LRILDVSSNQL 110 (788)
Q Consensus 100 L~~L~Ls~n~~ 110 (788)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 34444444443
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.60 E-value=0.18 Score=29.84 Aligned_cols=22 Identities=41% Similarity=0.665 Sum_probs=13.5
Q ss_pred CCCCCEEECCCCcCcCcCChhhh
Q 003888 97 MTSLRILDVSSNQLTGSISSSPL 119 (788)
Q Consensus 97 l~~L~~L~Ls~n~~~~~i~~~~l 119 (788)
+++|++|+|++|++. .+|...|
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 356666777777666 6665443
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.60 E-value=0.18 Score=29.84 Aligned_cols=22 Identities=41% Similarity=0.665 Sum_probs=13.5
Q ss_pred CCCCCEEECCCCcCcCcCChhhh
Q 003888 97 MTSLRILDVSSNQLTGSISSSPL 119 (788)
Q Consensus 97 l~~L~~L~Ls~n~~~~~i~~~~l 119 (788)
+++|++|+|++|++. .+|...|
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 356666777777666 6665443
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.26 E-value=0.052 Score=50.13 Aligned_cols=80 Identities=21% Similarity=0.245 Sum_probs=55.3
Q ss_pred CccEEEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCccc---cc-CCCCCCEEEcCCCC-CCcCCChhh
Q 003888 20 SLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQG---LC-SLMHLQELYIDNND-LRGSLPWCL 94 (788)
Q Consensus 20 ~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~---~~-~l~~L~~L~Ls~n~-l~~~~~~~l 94 (788)
.++.+|- +++.+..+..+.+. .++.++.|.+.+|.-- ...+ ++ -.++|+.|++++|. |++..-..+
T Consensus 102 ~IeaVDA--sds~I~~eGle~L~-~l~~i~~l~l~~ck~~------dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L 172 (221)
T KOG3864|consen 102 KIEAVDA--SDSSIMYEGLEHLR-DLRSIKSLSLANCKYF------DDWCLERLGGLAPSLQDLDLSGCPRITDGGLACL 172 (221)
T ss_pred eEEEEec--CCchHHHHHHHHHh-ccchhhhheeccccch------hhHHHHHhcccccchheeeccCCCeechhHHHHH
Confidence 5677777 88888888888888 8888888888887542 2212 22 24678888888775 665555566
Q ss_pred cCCCCCCEEECCCC
Q 003888 95 ANMTSLRILDVSSN 108 (788)
Q Consensus 95 ~~l~~L~~L~Ls~n 108 (788)
..+++|+.|.+.+-
T Consensus 173 ~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 173 LKLKNLRRLHLYDL 186 (221)
T ss_pred HHhhhhHHHHhcCc
Confidence 66777777766654
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.25 E-value=0.15 Score=30.22 Aligned_cols=19 Identities=37% Similarity=0.667 Sum_probs=8.6
Q ss_pred ccCCeEeCCCCcCCccCCc
Q 003888 615 TRIQTLNLSHNNLTGLIPS 633 (788)
Q Consensus 615 ~~L~~L~Ls~N~l~~~~~~ 633 (788)
++|+.|+|++|+|+.+.+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3444444444444444333
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.25 E-value=0.15 Score=30.22 Aligned_cols=19 Identities=37% Similarity=0.667 Sum_probs=8.6
Q ss_pred ccCCeEeCCCCcCCccCCc
Q 003888 615 TRIQTLNLSHNNLTGLIPS 633 (788)
Q Consensus 615 ~~L~~L~Ls~N~l~~~~~~ 633 (788)
++|+.|+|++|+|+.+.+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3444444444444444333
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.04 E-value=0.0067 Score=56.81 Aligned_cols=84 Identities=14% Similarity=0.116 Sum_probs=42.7
Q ss_pred cCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhhcCCCCCCEEECCCCcCcCcCChhhhcCCC
Q 003888 44 SMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLT 123 (788)
Q Consensus 44 ~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~ 123 (788)
..+..++||++.|++. .+-. .|..++.|..|+++.|.+. .+|..++.+..++++++..|..+ ..|. .++..+
T Consensus 40 ~~kr~tvld~~s~r~v----n~~~-n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~-s~~k~~ 111 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV----NLGK-NFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPK-SQKKEP 111 (326)
T ss_pred ccceeeeehhhhhHHH----hhcc-chHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCc-cccccC
Confidence 3445555555555442 2221 2344445555555555554 44555555555555555555554 4555 555555
Q ss_pred CCCEEECcCccc
Q 003888 124 SIEELMLSNNHF 135 (788)
Q Consensus 124 ~L~~L~Ls~n~l 135 (788)
+++++++..|.+
T Consensus 112 ~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 112 HPKKNEQKKTEF 123 (326)
T ss_pred CcchhhhccCcc
Confidence 555555555543
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.48 E-value=0.0071 Score=56.66 Aligned_cols=93 Identities=11% Similarity=0.066 Sum_probs=62.1
Q ss_pred eecCCCCCCCCCccEEEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCc
Q 003888 9 LVRGQGFPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRG 88 (788)
Q Consensus 9 ~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 88 (788)
.+|..+++.+...++||+ +.++.... -..+. .+..+..||++.|.+ ..+|. ++..+..++.+++..|..+
T Consensus 32 ~~~v~ei~~~kr~tvld~--~s~r~vn~-~~n~s-~~t~~~rl~~sknq~----~~~~~-d~~q~~e~~~~~~~~n~~~- 101 (326)
T KOG0473|consen 32 EIPVREIASFKRVTVLDL--SSNRLVNL-GKNFS-ILTRLVRLDLSKNQI----KFLPK-DAKQQRETVNAASHKNNHS- 101 (326)
T ss_pred ccchhhhhccceeeeehh--hhhHHHhh-ccchH-HHHHHHHHhccHhhH----hhChh-hHHHHHHHHHHHhhccchh-
Confidence 466667777777777777 66665422 12233 445677777777776 44554 6677777777777777666
Q ss_pred CCChhhcCCCCCCEEECCCCcCc
Q 003888 89 SLPWCLANMTSLRILDVSSNQLT 111 (788)
Q Consensus 89 ~~~~~l~~l~~L~~L~Ls~n~~~ 111 (788)
..|.+++..++++++++-++.+.
T Consensus 102 ~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 102 QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred hCCccccccCCcchhhhccCcch
Confidence 66777777777777777777665
No 83
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=88.56 E-value=0.0063 Score=66.16 Aligned_cols=141 Identities=31% Similarity=0.358 Sum_probs=91.8
Q ss_pred CCccEEEcccCCcccccch----hHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCC-CCCCEEEcCCCCCCcC----
Q 003888 19 KSLDHLDMVFARTALNTSF----LQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSL-MHLQELYIDNNDLRGS---- 89 (788)
Q Consensus 19 ~~L~~L~L~~~~~~~~~~~----~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~---- 89 (788)
..+.+|.| .+|.+.... ...+. ..++|..|++++|.++..+.......+... ..+++|++..|.+++.
T Consensus 87 ~~l~~L~L--~~~~l~~~~~~~l~~~l~-t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~ 163 (478)
T KOG4308|consen 87 ASLLHLSL--ANNRLGDRGAEELAQALK-TLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAP 163 (478)
T ss_pred hhHHHhhh--hhCccccchHHHHHHHhc-ccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHH
Confidence 34788888 888876443 34455 678888999999988633333333334443 5678888888888755
Q ss_pred CChhhcCCCCCCEEECCCCcCc--C--cCChhhhc----CCCCCCEEECcCccccccCC---ccccccCCC-CcEEEccC
Q 003888 90 LPWCLANMTSLRILDVSSNQLT--G--SISSSPLV----HLTSIEELMLSNNHFQIPIS---LEPLFNHSR-LKIFDAAN 157 (788)
Q Consensus 90 ~~~~l~~l~~L~~L~Ls~n~~~--~--~i~~~~l~----~l~~L~~L~Ls~n~l~~~~~---~~~l~~l~~-L~~L~l~~ 157 (788)
+.+.+.....++.+|++.|.+. | .++. .+. ...++++|++++|.++.... ...+...++ +.++++..
T Consensus 164 l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~-~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~ 242 (478)
T KOG4308|consen 164 LAAVLEKNEHLTELDLSLNGLIELGLLVLSQ-ALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLAS 242 (478)
T ss_pred HHHHHhcccchhHHHHHhcccchhhhHHHhh-hhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHh
Confidence 4556677888999999998874 1 1111 233 46788999999987652110 123444455 67788888
Q ss_pred cccccc
Q 003888 158 NEIKAE 163 (788)
Q Consensus 158 n~~~~~ 163 (788)
|.+.+.
T Consensus 243 n~l~d~ 248 (478)
T KOG4308|consen 243 NKLGDV 248 (478)
T ss_pred cCcchH
Confidence 887654
No 84
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=87.25 E-value=3 Score=44.00 Aligned_cols=63 Identities=17% Similarity=0.082 Sum_probs=33.5
Q ss_pred CCCCEEECCCCcCcCcCChhhhcC---CCCCCEEECcCccccccCC--ccccccCCCCcEEEccCcccc
Q 003888 98 TSLRILDVSSNQLTGSISSSPLVH---LTSIEELMLSNNHFQIPIS--LEPLFNHSRLKIFDAANNEIK 161 (788)
Q Consensus 98 ~~L~~L~Ls~n~~~~~i~~~~l~~---l~~L~~L~Ls~n~l~~~~~--~~~l~~l~~L~~L~l~~n~~~ 161 (788)
..+.+++|+.|.....+|. .+.. -.-+++++.+...++.... .-..++-+++...+++.|...
T Consensus 214 ~~lteldls~n~~Kddip~-~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s 281 (553)
T KOG4242|consen 214 LWLTELDLSTNGGKDDIPR-TLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTS 281 (553)
T ss_pred ccccccccccCCCCccchh-HHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCC
Confidence 3567777777777666665 3322 2356666666665542111 112233456666666655543
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.25 E-value=0.059 Score=49.80 Aligned_cols=84 Identities=15% Similarity=0.164 Sum_probs=50.4
Q ss_pred CCCEEEcCCCcccccCccCcCCCCCccEEEcccCcCcc-cCChhhhhcCCCCcEEEcccCc-CCCCCcccccCCCCCCEE
Q 003888 226 KLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQG-HIPVEIGDILPSLISFNISMNA-LDSSIPSSFGNMNFLQIL 303 (788)
Q Consensus 226 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~n~i~~-~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L 303 (788)
.++.++-+++.+.......+..++.++.|.+.++.--+ ..-..+....++|+.|++++|. |++..-..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 35666666666665555566666777777777664221 1111222345788888888774 555555566677777777
Q ss_pred EcccCc
Q 003888 304 DLSNNQ 309 (788)
Q Consensus 304 ~l~~n~ 309 (788)
.+.+-.
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 765543
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=77.40 E-value=1.9 Score=25.52 Aligned_cols=14 Identities=36% Similarity=0.674 Sum_probs=7.1
Q ss_pred ccCCeEeCCCCcCC
Q 003888 615 TRIQTLNLSHNNLT 628 (788)
Q Consensus 615 ~~L~~L~Ls~N~l~ 628 (788)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555554
No 87
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=75.88 E-value=2 Score=24.68 Aligned_cols=22 Identities=14% Similarity=0.283 Sum_probs=12.5
Q ss_pred CCccEEEcccCCcccccchhHHHh
Q 003888 19 KSLDHLDMVFARTALNTSFLQIIR 42 (788)
Q Consensus 19 ~~L~~L~L~~~~~~~~~~~~~~l~ 42 (788)
++|++|+| ++|++++....+++
T Consensus 2 ~~L~~L~l--~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDL--SNNQITDEGASALA 23 (24)
T ss_dssp TT-SEEE---TSSBEHHHHHHHHH
T ss_pred CCCCEEEc--cCCcCCHHHHHHhC
Confidence 56777777 77776665555443
No 88
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=68.50 E-value=1.1 Score=29.50 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=13.1
Q ss_pred eehhhhhhhHHHHHHHHhhhhhhhHHH
Q 003888 734 FITFTTSYVVVIFGIVIVLYVNSYWRR 760 (788)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (788)
.+++++++-+++++++..+.++.||||
T Consensus 12 aIa~~VvVPV~vI~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 12 AIAVGVVVPVGVIIIVLGAFLFFWYRR 38 (40)
T ss_pred EEEEEEEechHHHHHHHHHHhheEEec
Confidence 445555554444444444444445554
No 89
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=66.82 E-value=3.6 Score=34.73 Aligned_cols=33 Identities=21% Similarity=0.091 Sum_probs=23.5
Q ss_pred hhhhhhHHHHHHHHhhhhhhhHHHHHHHHHHhh
Q 003888 737 FTTSYVVVIFGIVIVLYVNSYWRRKWFYFVEMW 769 (788)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 769 (788)
+++++.++++++++..++++|.|+++..+-++.
T Consensus 105 ~il~il~~i~is~~~~~~yr~~r~~~~~~~~~~ 137 (139)
T PHA03099 105 GIVLVLVGIIITCCLLSVYRFTRRTKLPLQDMV 137 (139)
T ss_pred HHHHHHHHHHHHHHHHhhheeeecccCchhhcc
Confidence 445566666677777888888888887766654
No 90
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=65.06 E-value=4.6 Score=23.82 Aligned_cols=18 Identities=56% Similarity=0.696 Sum_probs=12.0
Q ss_pred CCCCEEECCCCcCcCcCCh
Q 003888 98 TSLRILDVSSNQLTGSISS 116 (788)
Q Consensus 98 ~~L~~L~Ls~n~~~~~i~~ 116 (788)
++|+.|++++|+++ ++|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35677777777776 6665
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=57.16 E-value=56 Score=35.02 Aligned_cols=61 Identities=21% Similarity=0.134 Sum_probs=29.7
Q ss_pred CCCcEEeCCCCCCCCCCCCCCcccc---cCCCCCCEEEcCCCCCCcC---CChhhcCCCCCCEEECCCCcC
Q 003888 46 PSLKYLSMSDSTLGTNSSRILDQGL---CSLMHLQELYIDNNDLRGS---LPWCLANMTSLRILDVSSNQL 110 (788)
Q Consensus 46 ~~L~~L~Ls~~~l~~~~~~~~~~~~---~~l~~L~~L~Ls~n~l~~~---~~~~l~~l~~L~~L~Ls~n~~ 110 (788)
..+.+++++.|... ..++. .+ ..-..+++++.+...+... -+-..+.-++|++.+++.|..
T Consensus 214 ~~lteldls~n~~K---ddip~-~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 214 LWLTELDLSTNGGK---DDIPR-TLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred ccccccccccCCCC---ccchh-HHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 45566667766654 33332 11 1112355666665554321 122234455666666666543
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=53.27 E-value=5.9 Score=42.91 Aligned_cols=62 Identities=27% Similarity=0.266 Sum_probs=33.9
Q ss_pred cccccEEECCCCcccccC--cccccCcccCCeEeCCCC--cCCccCCccccC--CCCCCEEECcCCcccc
Q 003888 590 LSLLSGLDLSCNKLIGHI--PPQIGNLTRIQTLNLSHN--NLTGLIPSTFSN--LKHIESLDLSYNKLNG 653 (788)
Q Consensus 590 l~~L~~L~Ls~n~l~~~~--~~~l~~l~~L~~L~Ls~N--~l~~~~~~~~~~--l~~L~~L~Ls~N~l~~ 653 (788)
.+.+..+.|++|++.... ...-...|+|+.|+|++| .+... ..+.. ...|++|-+.+|++..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCcccc
Confidence 456777777777765321 111233467777777777 33322 22222 2446677777777653
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=52.89 E-value=11 Score=49.33 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=28.2
Q ss_pred eCCCCcCCccCCccccCCCCCCEEECcCCcccccC
Q 003888 621 NLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI 655 (788)
Q Consensus 621 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 655 (788)
||++|+|+.+.+..|..+++|++|+|++|++.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC 35 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDC 35 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccccc
Confidence 57888888887888888888888888888887653
No 94
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=50.00 E-value=16 Score=22.01 Aligned_cols=12 Identities=42% Similarity=0.636 Sum_probs=6.5
Q ss_pred CCcEEeCCCCCC
Q 003888 47 SLKYLSMSDSTL 58 (788)
Q Consensus 47 ~L~~L~Ls~~~l 58 (788)
+|++|||++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 455555555555
No 95
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=48.25 E-value=11 Score=32.30 Aligned_cols=20 Identities=15% Similarity=0.351 Sum_probs=9.2
Q ss_pred ehhhhhhhHHHHHHHHhhhh
Q 003888 735 ITFTTSYVVVIFGIVIVLYV 754 (788)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~ 754 (788)
+++++|+++++++++.+++|
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y 86 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISY 86 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHHHH
Confidence 44444555555444444433
No 96
>PF15102 TMEM154: TMEM154 protein family
Probab=40.46 E-value=9.8 Score=33.44 Aligned_cols=28 Identities=14% Similarity=0.271 Sum_probs=12.6
Q ss_pred eeehhh-hhhhHHHHHHHHhhhhhhhHHH
Q 003888 733 FFITFT-TSYVVVIFGIVIVLYVNSYWRR 760 (788)
Q Consensus 733 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 760 (788)
++|.+. +.+++++++++++++++++||.
T Consensus 59 LmIlIP~VLLvlLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 59 LMILIPLVLLVLLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred EEEeHHHHHHHHHHHHHHHheeEEeeccc
Confidence 344443 3333444444444444455544
No 97
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=39.91 E-value=25 Score=33.11 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=17.6
Q ss_pred hheeehhhhhhhHHHHHHHHhhhhhhhH
Q 003888 731 DSFFITFTTSYVVVIFGIVIVLYVNSYW 758 (788)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (788)
..++++++.|++++++++++++++++++
T Consensus 37 ~~I~iaiVAG~~tVILVI~i~v~vR~CR 64 (221)
T PF08374_consen 37 VKIMIAIVAGIMTVILVIFIVVLVRYCR 64 (221)
T ss_pred eeeeeeeecchhhhHHHHHHHHHHHHHh
Confidence 3456667777777776666666654344
No 98
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=37.72 E-value=23 Score=20.68 Aligned_cols=11 Identities=45% Similarity=0.555 Sum_probs=5.6
Q ss_pred CCCCEEECCCC
Q 003888 98 TSLRILDVSSN 108 (788)
Q Consensus 98 ~~L~~L~Ls~n 108 (788)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 44555555554
No 99
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=36.72 E-value=34 Score=34.72 Aligned_cols=14 Identities=29% Similarity=0.634 Sum_probs=6.2
Q ss_pred HHHHhhhhhhhHHH
Q 003888 747 GIVIVLYVNSYWRR 760 (788)
Q Consensus 747 ~~~~~~~~~~~~~~ 760 (788)
+|++++|..+++||
T Consensus 270 LIMvIIYLILRYRR 283 (299)
T PF02009_consen 270 LIMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444444
No 100
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=36.41 E-value=24 Score=38.52 Aligned_cols=85 Identities=21% Similarity=0.202 Sum_probs=54.2
Q ss_pred HHHhhcCCCCcEEeCCCCCCCCCCCCCCc-ccc-cCCCCCCEEEcCCC--CCCcCCChhhcC--CCCCCEEECCCCcCcC
Q 003888 39 QIIRESMPSLKYLSMSDSTLGTNSSRILD-QGL-CSLMHLQELYIDNN--DLRGSLPWCLAN--MTSLRILDVSSNQLTG 112 (788)
Q Consensus 39 ~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~-~~~-~~l~~L~~L~Ls~n--~l~~~~~~~l~~--l~~L~~L~Ls~n~~~~ 112 (788)
..+.++.+.+..++|++|++- .+.. .++ ..-|+|+.|+|++| .+... .++.+ ...|++|-+.+|.+..
T Consensus 211 ~~~~~n~p~i~sl~lsnNrL~----~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 211 KHIEENFPEILSLSLSNNRLY----HLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred HHhhcCCcceeeeecccchhh----chhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCcccc
Confidence 445557889999999999883 3321 012 35688999999999 44422 23332 3457889999998874
Q ss_pred cCCh--h----hhcCCCCCCEEE
Q 003888 113 SISS--S----PLVHLTSIEELM 129 (788)
Q Consensus 113 ~i~~--~----~l~~l~~L~~L~ 129 (788)
.... . .-...|+|..||
T Consensus 285 tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 285 TFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred chhhhHHHHHHHHHhcchheeec
Confidence 3321 1 123578888876
No 101
>PTZ00370 STEVOR; Provisional
Probab=35.64 E-value=22 Score=35.20 Aligned_cols=12 Identities=58% Similarity=0.974 Sum_probs=4.8
Q ss_pred HhhhhhhhHHHH
Q 003888 750 IVLYVNSYWRRK 761 (788)
Q Consensus 750 ~~~~~~~~~~~~ 761 (788)
+++|++.|+||+
T Consensus 272 iilYiwlyrrRK 283 (296)
T PTZ00370 272 IILYIWLYRRRK 283 (296)
T ss_pred HHHHHHHHHhhc
Confidence 333444444443
No 102
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=34.76 E-value=12 Score=30.63 Aligned_cols=15 Identities=27% Similarity=0.350 Sum_probs=5.6
Q ss_pred hhhhhhHHHHHHHHh
Q 003888 737 FTTSYVVVIFGIVIV 751 (788)
Q Consensus 737 ~~~~~~~~~~~~~~~ 751 (788)
++++.++++.+++.+
T Consensus 71 i~vg~~~~v~~lv~~ 85 (96)
T PTZ00382 71 ISVAVVAVVGGLVGF 85 (96)
T ss_pred EEeehhhHHHHHHHH
Confidence 333333333333333
No 103
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=34.38 E-value=24 Score=28.11 Aligned_cols=29 Identities=7% Similarity=0.132 Sum_probs=18.9
Q ss_pred hheeehhhhhhhHHHHHHHHhhhhhhhHH
Q 003888 731 DSFFITFTTSYVVVIFGIVIVLYVNSYWR 759 (788)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (788)
.|.+++.+.+++++++++..+++++.+|+
T Consensus 41 yWpyLA~GGG~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 41 YWPYLAAGGGLILILIIIALVCCCRAKHK 69 (98)
T ss_pred hhHHhhccchhhhHHHHHHHHHHhhhhhh
Confidence 35667777777776666666666665555
No 104
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=33.02 E-value=22 Score=35.02 Aligned_cols=12 Identities=58% Similarity=0.974 Sum_probs=5.0
Q ss_pred HhhhhhhhHHHH
Q 003888 750 IVLYVNSYWRRK 761 (788)
Q Consensus 750 ~~~~~~~~~~~~ 761 (788)
+++|++.|+||+
T Consensus 276 iiLYiWlyrrRK 287 (295)
T TIGR01478 276 IILYIWLYRRRK 287 (295)
T ss_pred HHHHHHHHHhhc
Confidence 334444444443
No 105
>PTZ00046 rifin; Provisional
Probab=28.27 E-value=37 Score=35.12 Aligned_cols=21 Identities=38% Similarity=0.660 Sum_probs=10.3
Q ss_pred hhHHHHHHHHhhhhhhhHHHH
Q 003888 741 YVVVIFGIVIVLYVNSYWRRK 761 (788)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~~~ 761 (788)
++++++++++++|...++||+
T Consensus 323 AIvVIVLIMvIIYLILRYRRK 343 (358)
T PTZ00046 323 AIVVIVLIMVIIYLILRYRRK 343 (358)
T ss_pred HHHHHHHHHHHHHHHHHhhhc
Confidence 333334444455655555554
No 106
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=27.14 E-value=41 Score=34.71 Aligned_cols=20 Identities=30% Similarity=0.698 Sum_probs=9.7
Q ss_pred hHHHHHHHHhhhhhhhHHHH
Q 003888 742 VVVIFGIVIVLYVNSYWRRK 761 (788)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~ 761 (788)
+++++++++++|...++||+
T Consensus 319 IvvIVLIMvIIYLILRYRRK 338 (353)
T TIGR01477 319 ILIIVLIMVIIYLILRYRRK 338 (353)
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 33333444445555555554
No 107
>PF15050 SCIMP: SCIMP protein
Probab=26.47 E-value=58 Score=27.34 Aligned_cols=29 Identities=21% Similarity=0.573 Sum_probs=11.7
Q ss_pred eeehhhhhhhHHHHHHHHhhhhhhhHHHH
Q 003888 733 FFITFTTSYVVVIFGIVIVLYVNSYWRRK 761 (788)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (788)
|+|.+++.++++-.++..++|+..+|+.+
T Consensus 8 FWiiLAVaII~vS~~lglIlyCvcR~~lR 36 (133)
T PF15050_consen 8 FWIILAVAIILVSVVLGLILYCVCRWQLR 36 (133)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444333333333334544455433
No 108
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=26.07 E-value=66 Score=24.16 Aligned_cols=31 Identities=13% Similarity=0.051 Sum_probs=18.2
Q ss_pred hheeehhhhhhhHHHHHHHHhhhhhhhHHHH
Q 003888 731 DSFFITFTTSYVVVIFGIVIVLYVNSYWRRK 761 (788)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (788)
.|..|++..+++++++..+.=+||+.+..++
T Consensus 32 qW~aIGvi~gi~~~~lt~ltN~YFK~k~drr 62 (68)
T PF04971_consen 32 QWAAIGVIGGIFFGLLTYLTNLYFKIKEDRR 62 (68)
T ss_pred cchhHHHHHHHHHHHHHHHhHhhhhhhHhhh
Confidence 3555666666666665555556666554443
No 109
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=23.44 E-value=39 Score=23.49 Aligned_cols=10 Identities=40% Similarity=0.879 Sum_probs=8.5
Q ss_pred CCCCCCCCCC
Q 003888 697 NTFLCGLPLP 706 (788)
Q Consensus 697 n~~~c~~~l~ 706 (788)
|||.|+|.+.
T Consensus 1 NP~~CdC~l~ 10 (51)
T smart00082 1 NPFICDCELR 10 (51)
T ss_pred CCccCcCCch
Confidence 8999999864
No 110
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=21.42 E-value=1e+02 Score=24.32 Aligned_cols=18 Identities=17% Similarity=0.362 Sum_probs=7.1
Q ss_pred hhhHHHHHHHHhhhhhhh
Q 003888 740 SYVVVIFGIVIVLYVNSY 757 (788)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~ 757 (788)
++++++++.+++.|+..+
T Consensus 38 lvI~~iFil~VilwfvCC 55 (94)
T PF05393_consen 38 LVICGIFILLVILWFVCC 55 (94)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334333344444333
No 111
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=21.42 E-value=23 Score=31.47 Aligned_cols=9 Identities=11% Similarity=-0.031 Sum_probs=4.2
Q ss_pred eehhhhhhh
Q 003888 734 FITFTTSYV 742 (788)
Q Consensus 734 ~~~~~~~~~ 742 (788)
.|++++|+.
T Consensus 51 VIGvVVGVG 59 (154)
T PF04478_consen 51 VIGVVVGVG 59 (154)
T ss_pred EEEEEeccc
Confidence 445544443
No 112
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=21.19 E-value=55 Score=27.93 Aligned_cols=15 Identities=27% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHhhhhhhhHHHHHH
Q 003888 749 VIVLYVNSYWRRKWF 763 (788)
Q Consensus 749 ~~~~~~~~~~~~~~~ 763 (788)
.+++++++.+|+++|
T Consensus 96 sg~lv~rrcrrr~~~ 110 (129)
T PF12191_consen 96 SGFLVWRRCRRREKF 110 (129)
T ss_dssp ---------------
T ss_pred HHHHHHhhhhccccC
Confidence 355566666666655
No 113
>PRK00523 hypothetical protein; Provisional
Probab=20.61 E-value=1.1e+02 Score=23.31 Aligned_cols=11 Identities=18% Similarity=0.196 Sum_probs=4.3
Q ss_pred hhhhhhHHHHH
Q 003888 752 LYVNSYWRRKW 762 (788)
Q Consensus 752 ~~~~~~~~~~~ 762 (788)
+|+-+++..+|
T Consensus 23 ffiark~~~k~ 33 (72)
T PRK00523 23 YFVSKKMFKKQ 33 (72)
T ss_pred HHHHHHHHHHH
Confidence 33333343333
Done!