Query 003888
Match_columns 788
No_of_seqs 624 out of 4999
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 07:19:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003888.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003888hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.8E-74 1.3E-78 673.9 46.4 676 19-714 50-754 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.6E-67 5.3E-72 617.9 39.9 593 14-677 95-741 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 7.8E-62 2.7E-66 565.4 50.3 595 46-727 25-670 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 8.5E-59 2.9E-63 539.8 50.5 622 9-706 18-656 (680)
5 3j0a_A TOLL-like receptor 5; m 100.0 1.7E-56 5.9E-61 529.8 42.9 584 23-728 8-608 (844)
6 3t6q_A CD180 antigen; protein- 100.0 3.2E-55 1.1E-59 502.8 42.0 559 23-723 16-602 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-53 3.8E-58 490.1 40.3 572 22-727 14-604 (606)
8 3j0a_A TOLL-like receptor 5; m 100.0 1.9E-53 6.6E-58 503.8 41.7 515 17-656 22-564 (844)
9 3t6q_A CD180 antigen; protein- 100.0 7.3E-53 2.5E-57 483.3 44.8 524 9-680 26-564 (606)
10 3vq2_A TLR4, TOLL-like recepto 100.0 1.5E-49 5.1E-54 455.8 39.2 531 9-656 25-562 (606)
11 2z63_A TOLL-like receptor 4, v 100.0 7E-47 2.4E-51 430.8 37.1 496 75-681 29-536 (570)
12 2z63_A TOLL-like receptor 4, v 100.0 4.1E-46 1.4E-50 424.4 39.4 491 47-657 29-536 (570)
13 4g8a_A TOLL-like receptor 4; l 100.0 1.3E-45 4.5E-50 426.4 38.4 550 29-723 39-622 (635)
14 2z81_A CD282 antigen, TOLL-lik 100.0 8.2E-46 2.8E-50 419.7 35.6 490 50-680 9-514 (549)
15 2z81_A CD282 antigen, TOLL-lik 100.0 1E-45 3.5E-50 418.8 34.5 488 77-704 8-514 (549)
16 4eco_A Uncharacterized protein 100.0 3.7E-46 1.3E-50 426.6 19.6 394 234-704 192-630 (636)
17 4eco_A Uncharacterized protein 100.0 1.2E-45 4E-50 422.5 19.5 463 74-655 81-603 (636)
18 4g8a_A TOLL-like receptor 4; l 100.0 2.1E-42 7.2E-47 399.6 40.6 531 9-679 45-583 (635)
19 4ecn_A Leucine-rich repeat pro 100.0 1.8E-43 6.1E-48 409.7 29.8 354 290-704 481-870 (876)
20 2z7x_B TOLL-like receptor 1, v 100.0 1.9E-43 6.6E-48 397.0 29.3 388 23-528 4-412 (520)
21 2z7x_B TOLL-like receptor 1, v 100.0 6.5E-43 2.2E-47 392.7 29.3 452 1-529 7-482 (520)
22 4ecn_A Leucine-rich repeat pro 100.0 8E-43 2.7E-47 404.3 29.6 383 210-677 435-865 (876)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.5E-40 1.2E-44 373.5 29.5 391 45-528 30-441 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.2E-40 2.4E-44 370.9 28.7 465 16-530 28-512 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 2.2E-39 7.5E-44 357.8 31.3 371 253-681 14-413 (455)
26 3v47_A TOLL-like receptor 5B a 100.0 1.2E-38 4.1E-43 351.9 29.4 382 204-656 14-412 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 5.6E-38 1.9E-42 342.8 24.2 220 249-529 111-331 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 2.3E-36 8E-41 330.0 28.8 392 199-702 10-431 (454)
29 2id5_A Lingo-1, leucine rich r 100.0 1.1E-36 3.8E-41 338.0 25.6 347 277-704 14-360 (477)
30 2id5_A Lingo-1, leucine rich r 100.0 8.1E-36 2.8E-40 331.0 26.1 349 252-682 14-362 (477)
31 1o6v_A Internalin A; bacterial 100.0 1.2E-34 4.2E-39 319.8 33.7 347 223-678 44-390 (466)
32 1o6v_A Internalin A; bacterial 100.0 2.4E-34 8.2E-39 317.5 34.1 346 198-653 44-389 (466)
33 3bz5_A Internalin-J, INLJ; leu 100.0 7E-35 2.4E-39 318.6 24.1 362 191-683 33-394 (457)
34 3o6n_A APL1; leucine-rich repe 100.0 5.1E-34 1.8E-38 307.6 27.0 334 298-704 45-378 (390)
35 3bz5_A Internalin-J, INLJ; leu 100.0 3.5E-33 1.2E-37 305.2 29.3 63 69-137 37-99 (457)
36 3oja_B Anopheles plasmodium-re 100.0 4E-33 1.4E-37 317.1 27.0 334 298-704 51-384 (597)
37 4fmz_A Internalin; leucine ric 100.0 6.3E-32 2.2E-36 286.6 30.1 304 273-676 43-346 (347)
38 3o6n_A APL1; leucine-rich repe 100.0 8.1E-32 2.8E-36 290.4 29.1 333 248-678 44-376 (390)
39 4fmz_A Internalin; leucine ric 100.0 1.8E-31 6.1E-36 283.1 30.8 305 247-652 42-346 (347)
40 1ogq_A PGIP-2, polygalacturona 100.0 7.4E-33 2.5E-37 287.9 18.0 260 371-709 50-313 (313)
41 3oja_B Anopheles plasmodium-re 100.0 5.8E-31 2E-35 299.3 28.4 313 248-656 50-362 (597)
42 1xku_A Decorin; proteoglycan, 100.0 5.6E-30 1.9E-34 269.2 29.1 291 299-674 32-330 (330)
43 2ft3_A Biglycan; proteoglycan, 100.0 3.4E-30 1.2E-34 271.0 25.7 290 299-674 34-331 (332)
44 1z7x_W Ribonuclease inhibitor; 100.0 8.6E-34 2.9E-38 313.7 -4.9 363 249-678 3-413 (461)
45 2ft3_A Biglycan; proteoglycan, 100.0 1.5E-29 5E-34 266.1 26.6 288 348-698 34-331 (332)
46 1xku_A Decorin; proteoglycan, 100.0 3.6E-29 1.2E-33 263.0 27.7 288 348-697 32-329 (330)
47 1z7x_W Ribonuclease inhibitor; 100.0 2E-33 6.7E-38 310.8 -6.0 308 200-527 3-353 (461)
48 1ogq_A PGIP-2, polygalacturona 100.0 1.1E-30 3.8E-35 271.5 14.2 251 347-676 50-304 (313)
49 3zyj_A Leucine-rich repeat-con 100.0 2.5E-28 8.6E-33 267.1 25.9 252 348-680 44-296 (440)
50 3zyi_A Leucine-rich repeat-con 100.0 4.4E-28 1.5E-32 266.2 24.7 252 348-680 55-307 (452)
51 2z66_A Variable lymphocyte rec 100.0 2.1E-28 7.3E-33 254.3 18.6 285 350-721 10-301 (306)
52 2z80_A TOLL-like receptor 2, v 100.0 2.2E-28 7.4E-33 259.6 17.0 208 297-532 30-239 (353)
53 2z80_A TOLL-like receptor 2, v 100.0 5E-28 1.7E-32 256.8 16.4 280 321-680 29-318 (353)
54 2z66_A Variable lymphocyte rec 100.0 1.2E-27 3.9E-32 248.7 18.1 282 325-685 9-296 (306)
55 3ogk_B Coronatine-insensitive 99.9 2.7E-29 9.1E-34 287.0 4.6 432 39-524 67-547 (592)
56 3zyi_A Leucine-rich repeat-con 99.9 2.3E-26 7.7E-31 252.6 26.8 250 325-655 56-306 (452)
57 3zyj_A Leucine-rich repeat-con 99.9 3E-26 1E-30 250.7 26.9 248 325-653 45-293 (440)
58 1ozn_A Reticulon 4 receptor; N 99.9 5.8E-27 2E-31 240.7 19.3 225 398-678 14-240 (285)
59 1ozn_A Reticulon 4 receptor; N 99.9 1E-26 3.4E-31 238.9 18.3 255 350-684 14-269 (285)
60 3ogk_B Coronatine-insensitive 99.9 2.3E-28 7.9E-33 279.2 3.5 424 14-452 68-548 (592)
61 4fcg_A Uncharacterized protein 99.9 1.1E-25 3.6E-30 235.3 20.8 233 347-675 81-313 (328)
62 3g06_A SSPH2 (leucine-rich rep 99.9 1.3E-24 4.3E-29 244.2 27.2 84 592-684 222-305 (622)
63 3o53_A Protein LRIM1, AGAP0063 99.9 1.2E-27 4.2E-32 249.3 2.6 263 328-680 15-280 (317)
64 4fcg_A Uncharacterized protein 99.9 3.1E-25 1E-29 231.8 19.4 223 395-698 81-312 (328)
65 3o53_A Protein LRIM1, AGAP0063 99.9 4.5E-27 1.5E-31 245.0 3.5 261 349-698 12-273 (317)
66 3oja_A Leucine-rich immune mol 99.9 2.2E-26 7.5E-31 253.8 7.7 62 467-528 120-182 (487)
67 3g06_A SSPH2 (leucine-rich rep 99.9 1.1E-23 3.8E-28 236.5 27.6 68 591-663 241-308 (622)
68 2p1m_B Transport inhibitor res 99.9 1.7E-27 5.9E-32 272.2 -5.1 405 196-676 62-519 (594)
69 2o6q_A Variable lymphocyte rec 99.9 1.1E-23 3.8E-28 214.0 23.3 206 420-680 17-222 (270)
70 1wwl_A Monocyte differentiatio 99.9 8.1E-26 2.8E-30 234.9 7.6 132 294-431 39-185 (312)
71 3oja_A Leucine-rich immune mol 99.9 1.4E-25 4.7E-30 247.4 9.3 244 372-704 35-286 (487)
72 1wwl_A Monocyte differentiatio 99.9 5.1E-26 1.7E-30 236.5 5.2 204 297-529 94-310 (312)
73 2z62_A TOLL-like receptor 4, v 99.9 9.1E-24 3.1E-28 215.7 20.8 189 463-704 48-241 (276)
74 2z62_A TOLL-like receptor 4, v 99.9 1.6E-23 5.5E-28 213.8 21.7 209 396-681 29-242 (276)
75 2p1m_B Transport inhibitor res 99.9 1.4E-26 4.8E-31 264.6 -2.2 426 14-453 61-542 (594)
76 1p9a_G Platelet glycoprotein I 99.9 2.2E-23 7.7E-28 213.4 21.4 205 415-678 6-210 (290)
77 2o6q_A Variable lymphocyte rec 99.9 1.2E-22 4.1E-27 206.3 24.3 207 442-704 16-222 (270)
78 3rfs_A Internalin B, repeat mo 99.9 9.5E-23 3.2E-27 207.2 17.6 207 393-686 39-245 (272)
79 1p9a_G Platelet glycoprotein I 99.9 6.6E-22 2.3E-26 202.4 22.1 205 367-654 6-210 (290)
80 3m19_A Variable lymphocyte rec 99.9 1.2E-21 3.9E-26 196.7 19.8 162 467-680 35-196 (251)
81 3rfs_A Internalin B, repeat mo 99.9 9.8E-22 3.3E-26 199.7 17.6 204 420-681 20-223 (272)
82 3m19_A Variable lymphocyte rec 99.9 3.3E-21 1.1E-25 193.4 20.3 183 467-704 14-197 (251)
83 3goz_A Leucine-rich repeat-con 99.9 8.9E-23 3E-27 216.8 2.8 87 592-678 197-299 (362)
84 2xwt_C Thyrotropin receptor; s 99.9 6.6E-21 2.3E-25 189.7 16.0 78 592-673 156-236 (239)
85 2xwt_C Thyrotropin receptor; s 99.8 8.8E-21 3E-25 188.8 15.7 200 443-698 32-237 (239)
86 3goz_A Leucine-rich repeat-con 99.8 1.5E-21 5.2E-26 207.3 10.1 183 24-239 3-210 (362)
87 2ca6_A RAN GTPase-activating p 99.8 5.8E-23 2E-27 220.6 -1.3 245 364-680 25-320 (386)
88 4glp_A Monocyte differentiatio 99.8 4.2E-21 1.4E-25 199.3 11.5 57 591-652 251-307 (310)
89 2v9t_B SLIT homolog 2 protein 99.8 9.2E-21 3.1E-25 185.4 12.9 194 470-727 14-208 (220)
90 4glp_A Monocyte differentiatio 99.8 1.1E-20 3.9E-25 195.9 13.8 228 200-433 64-308 (310)
91 2ca6_A RAN GTPase-activating p 99.8 8.9E-22 3E-26 211.4 5.5 254 37-339 24-319 (386)
92 2ast_B S-phase kinase-associat 99.8 6.1E-22 2.1E-26 208.6 2.8 89 592-684 223-314 (336)
93 2ast_B S-phase kinase-associat 99.8 1E-20 3.5E-25 199.2 11.9 101 48-158 49-152 (336)
94 1h6u_A Internalin H; cell adhe 99.8 4.6E-20 1.6E-24 190.8 16.6 57 592-652 174-230 (308)
95 4ay9_X Follicle-stimulating ho 99.8 3.9E-20 1.3E-24 195.3 15.3 244 350-677 12-260 (350)
96 1h6u_A Internalin H; cell adhe 99.8 6.5E-20 2.2E-24 189.6 16.5 196 391-678 37-232 (308)
97 4ay9_X Follicle-stimulating ho 99.8 3E-19 1E-23 188.5 19.3 243 252-525 12-256 (350)
98 2v70_A SLIT-2, SLIT homolog 2 99.8 5E-20 1.7E-24 180.2 11.6 191 469-723 13-205 (220)
99 2xot_A Amphoterin-induced prot 99.8 1.1E-19 3.7E-24 192.7 13.6 113 592-704 89-206 (361)
100 2o6s_A Variable lymphocyte rec 99.8 3.9E-19 1.3E-23 172.7 15.9 162 466-686 27-188 (208)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 1.5E-18 5.2E-23 169.6 16.0 156 445-656 14-170 (220)
102 3cvr_A Invasion plasmid antige 99.8 1.2E-18 4E-23 193.2 16.4 166 443-686 81-253 (571)
103 2v9t_B SLIT homolog 2 protein 99.8 2.3E-18 7.8E-23 168.4 16.5 154 445-654 14-167 (220)
104 3e6j_A Variable lymphocyte rec 99.8 4E-18 1.4E-22 167.9 17.1 157 468-680 20-176 (229)
105 2o6s_A Variable lymphocyte rec 99.8 3.9E-18 1.4E-22 165.6 15.6 131 298-429 28-158 (208)
106 2xot_A Amphoterin-induced prot 99.8 2.7E-18 9.2E-23 181.9 13.9 160 467-678 39-204 (361)
107 3e6j_A Variable lymphocyte rec 99.8 1.8E-17 6E-22 163.3 17.3 155 444-655 21-175 (229)
108 1h6t_A Internalin B; cell adhe 99.8 8.8E-18 3E-22 172.0 15.7 151 463-677 64-214 (291)
109 1w8a_A SLIT protein; signaling 99.7 1.9E-17 6.7E-22 158.0 14.0 135 592-726 30-181 (192)
110 2wfh_A SLIT homolog 2 protein 99.7 1.7E-17 6E-22 158.2 12.2 135 591-726 31-181 (193)
111 1m9s_A Internalin B; cell inva 99.7 4.6E-17 1.6E-21 182.7 16.0 62 463-528 83-144 (605)
112 3sb4_A Hypothetical leucine ri 99.7 7E-18 2.4E-22 176.4 7.8 292 17-354 23-328 (329)
113 3cvr_A Invasion plasmid antige 99.7 3.6E-16 1.2E-20 173.2 20.8 178 226-433 60-244 (571)
114 3sb4_A Hypothetical leucine ri 99.7 1.7E-17 5.8E-22 173.5 9.7 75 593-669 252-327 (329)
115 1h6t_A Internalin B; cell adhe 99.7 1.8E-16 6E-21 162.2 17.0 170 248-433 45-214 (291)
116 1xeu_A Internalin C; cellular 99.7 6E-17 2.1E-21 162.9 12.4 152 463-679 37-188 (263)
117 4ezg_A Putative uncharacterize 99.7 6.7E-17 2.3E-21 155.2 12.0 155 463-677 40-195 (197)
118 1w8a_A SLIT protein; signaling 99.7 1.6E-16 5.4E-21 151.7 12.8 131 470-655 11-142 (192)
119 4fs7_A Uncharacterized protein 99.7 1.5E-15 5.3E-20 162.8 21.8 331 265-667 62-392 (394)
120 4fdw_A Leucine rich hypothetic 99.7 2.1E-15 7.3E-20 160.7 22.2 266 322-676 112-383 (401)
121 1m9s_A Internalin B; cell inva 99.7 4.4E-16 1.5E-20 174.7 17.0 144 276-432 23-166 (605)
122 4fdw_A Leucine rich hypothetic 99.7 3.7E-15 1.3E-19 158.8 21.9 247 324-652 136-383 (401)
123 4ezg_A Putative uncharacterize 99.6 6.7E-16 2.3E-20 148.2 13.0 103 324-430 45-147 (197)
124 1dce_A Protein (RAB geranylger 99.6 1.8E-18 6.3E-23 192.9 -8.4 77 592-670 487-567 (567)
125 1xeu_A Internalin C; cellular 99.6 6.8E-16 2.3E-20 155.2 10.1 169 324-531 20-188 (263)
126 4fs7_A Uncharacterized protein 99.6 2.4E-14 8.3E-19 153.5 20.7 317 286-673 59-376 (394)
127 2ell_A Acidic leucine-rich nuc 99.6 3.6E-15 1.2E-19 139.1 11.3 86 591-676 71-160 (168)
128 2wfh_A SLIT homolog 2 protein 99.6 1E-14 3.6E-19 138.9 13.9 87 592-678 55-141 (193)
129 2ell_A Acidic leucine-rich nuc 99.6 2.9E-15 9.9E-20 139.8 9.5 137 466-657 23-164 (168)
130 2o6r_A Variable lymphocyte rec 99.6 1.6E-14 5.4E-19 136.0 14.1 89 592-680 53-141 (177)
131 2o6r_A Variable lymphocyte rec 99.6 1.3E-14 4.6E-19 136.5 13.5 114 591-704 28-141 (177)
132 2je0_A Acidic leucine-rich nuc 99.6 5.1E-15 1.7E-19 135.0 9.8 81 591-671 64-148 (149)
133 1dce_A Protein (RAB geranylger 99.6 8.7E-17 3E-21 179.4 -3.5 183 246-436 346-550 (567)
134 2je0_A Acidic leucine-rich nuc 99.5 8.2E-15 2.8E-19 133.6 9.1 131 16-156 14-148 (149)
135 4b8c_D Glucose-repressible alc 99.5 2.5E-15 8.5E-20 173.2 5.0 143 289-436 215-358 (727)
136 4b8c_D Glucose-repressible alc 99.5 1.4E-15 4.9E-20 175.2 2.9 164 347-535 173-336 (727)
137 4gt6_A Cell surface protein; l 99.5 6.6E-13 2.3E-17 142.3 23.4 321 276-674 66-389 (394)
138 3g39_A Variable lymphocyte rec 99.5 7.3E-14 2.5E-18 130.0 11.3 110 592-704 10-119 (170)
139 4gt6_A Cell surface protein; l 99.5 3.2E-12 1.1E-16 136.9 25.0 327 226-652 65-391 (394)
140 1a9n_A U2A', U2A'; complex (nu 99.5 9E-14 3.1E-18 130.5 9.1 84 592-676 65-153 (176)
141 2r9u_A Variable lymphocyte rec 99.5 2.3E-13 7.8E-18 127.1 11.2 108 594-704 15-122 (174)
142 1a9n_A U2A', U2A'; complex (nu 99.4 1E-13 3.5E-18 130.2 7.9 135 463-653 15-154 (176)
143 3g39_A Variable lymphocyte rec 99.4 4.8E-13 1.6E-17 124.5 12.2 90 591-680 30-119 (170)
144 1ds9_A Outer arm dynein; leuci 99.4 1.1E-15 3.9E-20 146.7 -7.6 155 464-677 15-186 (198)
145 2r9u_A Variable lymphocyte rec 99.4 1.5E-12 5.2E-17 121.4 12.1 90 591-680 33-122 (174)
146 1ds9_A Outer arm dynein; leuci 99.3 8.9E-15 3.1E-19 140.4 -8.8 153 487-698 14-183 (198)
147 2ifg_A High affinity nerve gro 99.3 5.6E-12 1.9E-16 132.8 10.2 106 596-704 13-120 (347)
148 4h09_A Hypothetical leucine ri 99.3 4.8E-10 1.7E-14 119.4 24.7 144 463-663 213-356 (379)
149 2ifg_A High affinity nerve gro 99.3 7.9E-12 2.7E-16 131.6 10.0 114 590-704 30-145 (347)
150 4h09_A Hypothetical leucine ri 99.3 4.9E-10 1.7E-14 119.4 22.9 154 463-673 190-343 (379)
151 3un9_A NLR family member X1; l 99.2 1.3E-12 4.6E-17 137.6 -3.0 161 224-384 71-252 (372)
152 3un9_A NLR family member X1; l 99.1 2.5E-12 8.7E-17 135.5 -2.3 159 274-432 72-252 (372)
153 2ra8_A Uncharacterized protein 98.7 3.8E-09 1.3E-13 110.2 4.2 162 463-674 168-341 (362)
154 2ra8_A Uncharacterized protein 98.6 1.4E-08 4.8E-13 105.8 5.1 42 198-239 250-293 (362)
155 1io0_A Tropomodulin; LRR prote 98.6 6.4E-09 2.2E-13 97.8 1.8 123 38-162 29-165 (185)
156 1io0_A Tropomodulin; LRR prote 98.6 7.8E-09 2.7E-13 97.2 1.1 119 14-136 31-164 (185)
157 3rw6_A Nuclear RNA export fact 98.4 1.7E-07 5.7E-12 92.4 3.9 66 44-115 168-237 (267)
158 3rw6_A Nuclear RNA export fact 98.2 9.1E-07 3.1E-11 87.1 5.5 67 612-680 167-237 (267)
159 3e4g_A ATP synthase subunit S, 98.0 1.6E-06 5.4E-11 78.9 2.9 83 47-134 62-150 (176)
160 3rfe_A Platelet glycoprotein I 98.0 3.5E-06 1.2E-10 73.3 3.9 97 618-723 11-109 (130)
161 3e4g_A ATP synthase subunit S, 98.0 1.2E-06 4E-11 79.7 0.5 83 592-674 62-150 (176)
162 1pgv_A TMD-1, tropomodulin TMD 97.7 1.5E-05 5.2E-10 73.9 2.6 117 44-161 39-170 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.5 2.3E-05 7.7E-10 72.7 0.9 116 16-135 38-169 (197)
164 3rfe_A Platelet glycoprotein I 97.0 0.0012 4.2E-08 57.0 7.1 58 594-653 11-69 (130)
165 2lz0_A Uncharacterized protein 63.8 14 0.00047 29.5 5.8 45 335-380 8-52 (100)
166 2lz0_A Uncharacterized protein 62.2 8.3 0.00028 30.8 4.2 45 603-648 8-52 (100)
167 2k1k_A Ephrin type-A receptor 22.4 25 0.00086 22.2 0.6 10 737-746 16-25 (38)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.8e-74 Score=673.90 Aligned_cols=676 Identities=29% Similarity=0.438 Sum_probs=576.2
Q ss_pred CCccEEEcccCCcccccc---hhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCCh--h
Q 003888 19 KSLDHLDMVFARTALNTS---FLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPW--C 93 (788)
Q Consensus 19 ~~L~~L~L~~~~~~~~~~---~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~ 93 (788)
.+++.|+| +++.+.|. ++.++. ++++|+.++++.+.+ ..+++ .|+++++|++|+|++|.+++.+|. .
T Consensus 50 ~~v~~L~L--~~~~l~g~~~~l~~~l~-~L~~L~~l~~~~~~~----~~l~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 121 (768)
T 3rgz_A 50 DKVTSIDL--SSKPLNVGFSAVSSSLL-SLTGLESLFLSNSHI----NGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTS 121 (768)
T ss_dssp TEEEEEEC--TTSCCCEEHHHHHHHTT-TCTTCCEEECTTSCE----EECCC-CCCCCTTCCEEECCSSEEEEEGGGGGG
T ss_pred CcEEEEEC--CCCCcCCccCccChhHh-ccCcccccCCcCCCc----CCCch-hhccCCCCCEEECCCCcCCCcCCChHH
Confidence 57999999 99999988 888999 999999999999876 34444 799999999999999999988888 9
Q ss_pred hcCCCCCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCccc--cccCCCCcEEEccCccccccccccccCC
Q 003888 94 LANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEP--LFNHSRLKIFDAANNEIKAEITESHSLT 171 (788)
Q Consensus 94 l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 171 (788)
++++++|++|++++|.+.+.+|...+.++++|++|++++|.+++..+... +.++++|++|++++|.+.+..+.
T Consensus 122 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----- 196 (768)
T 3rgz_A 122 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV----- 196 (768)
T ss_dssp GGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC-----
T ss_pred HhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc-----
Confidence 99999999999999999988887445899999999999999986655321 78999999999999998764332
Q ss_pred CCcccccEEEccCCCCCCCCcCccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCcccccCccCcCCCCCc
Q 003888 172 APNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWL 251 (788)
Q Consensus 172 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L 251 (788)
....+|++|++ .++.+.+.+|. +..+++|++|++++|.+.+.+|..+ ..+++|++|++++|.+++..+.. .+++|
T Consensus 197 ~~l~~L~~L~L-s~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L 271 (768)
T 3rgz_A 197 SRCVNLEFLDV-SSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFVGPIPPL--PLKSL 271 (768)
T ss_dssp TTCTTCCEEEC-CSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHT-TTCSSCCEEECCSSCCEESCCCC--CCTTC
T ss_pred ccCCcCCEEEC-cCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHH-hcCCCCCEEECCCCcccCccCcc--ccCCC
Confidence 34458999999 88888887887 8999999999999999998888776 78999999999999999877665 89999
Q ss_pred cEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEcc
Q 003888 252 RFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALS 331 (788)
Q Consensus 252 ~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~ 331 (788)
++|++++|.+++.+|..++..+++|++|++++|.+++..|..|+++++|++|++++|.+++.+|...+..+++|++|+++
T Consensus 272 ~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls 351 (768)
T 3rgz_A 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351 (768)
T ss_dssp CEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECC
T ss_pred CEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCc
Confidence 99999999999999999888779999999999999999999999999999999999999989998867789999999999
Q ss_pred CccCCCcCcccCcCCC-CCCEEeccCCcCCCcCCccccC--CCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCccc
Q 003888 332 NNNLKGHMFSRNFNLT-NLRSLQLEGNHLEGEIPQSLSK--CSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLE 408 (788)
Q Consensus 332 ~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~--l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~ 408 (788)
+|++++..+..+..++ +|++|++++|.+++..|..+.. +++|++|++++|.+++..|..+..+++|++|++++|.+.
T Consensus 352 ~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 431 (768)
T 3rgz_A 352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 431 (768)
T ss_dssp SSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred CCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCccc
Confidence 9999988888888877 9999999999999888887777 889999999999999899999999999999999999999
Q ss_pred CCccccccCCCCccEEEccCCcCCCCCCCCCC-CCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccc
Q 003888 409 GPIPVGFCQLYSLQILDISDNNISGSLPSCFH-PLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWV 487 (788)
Q Consensus 409 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 487 (788)
+..|..+..+++|++|++++|.+.+..|..+. +++|+.|++++|.+.+.+|.. +..+++|++|++++|++++.+|.++
T Consensus 432 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~p~~~ 510 (768)
T 3rgz_A 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-LSNCTNLNWISLSNNRLTGEIPKWI 510 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred CcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH-HhcCCCCCEEEccCCccCCcCChHH
Confidence 99999999999999999999999988887665 789999999999998888876 9999999999999999999999999
Q ss_pred cCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCC------------CCCCccc
Q 003888 488 DGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSY------------SLKPFET 555 (788)
Q Consensus 488 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~ 555 (788)
..+++|++|++++|++++.+|..+..+++|+.|++++|++.+.+|..+............. .......
T Consensus 511 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (768)
T 3rgz_A 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA 590 (768)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSS
T ss_pred hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999998765532111100000 0000000
Q ss_pred --ccccccccchhhhcccc--ceeeeeccce--eeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCc
Q 003888 556 --SLVMDSMMIPAEKQIHE--NFEFTTKNIA--YIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTG 629 (788)
Q Consensus 556 --~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 629 (788)
..............+.. ......+... .......+++|+.|||++|++++.+|..++++++|+.|+|++|++++
T Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 670 (768)
T 3rgz_A 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670 (768)
T ss_dssp EEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred ccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCC
Confidence 00000000000000000 0000000000 00111336789999999999999999999999999999999999999
Q ss_pred cCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCCcccccCCCCccccCCCCCCCCCCCCCCC
Q 003888 630 LIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICR 709 (788)
Q Consensus 630 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~gn~~~c~~~l~~c~ 709 (788)
.+|..|+++++|++|||++|++++.+|..+..+++|++|++++|+++|.+|.. .++.++...++.|||.+|+.|+..|.
T Consensus 671 ~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~~l~~C~ 749 (768)
T 3rgz_A 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRCD 749 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEESTTSCCCC
T ss_pred CCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCCCCcCCC
Confidence 99999999999999999999999999999999999999999999999999985 78999999999999999999988887
Q ss_pred CCCCC
Q 003888 710 SPATM 714 (788)
Q Consensus 710 ~~~~~ 714 (788)
.....
T Consensus 750 ~~~~~ 754 (768)
T 3rgz_A 750 PSNAD 754 (768)
T ss_dssp SCC--
T ss_pred CCccC
Confidence 55443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.6e-67 Score=617.90 Aligned_cols=593 Identities=29% Similarity=0.395 Sum_probs=451.7
Q ss_pred CCCCCCCccEEEcccCCcccccchhH--HHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCC
Q 003888 14 GFPHFKSLDHLDMVFARTALNTSFLQ--IIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLP 91 (788)
Q Consensus 14 ~l~~~~~L~~L~L~~~~~~~~~~~~~--~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 91 (788)
.++++++|++|+| ++|.+++.+|. .+. ++++|++|++++|.+. +.++...+.++++|++|+|++|.+++..|
T Consensus 95 ~~~~l~~L~~L~L--s~n~l~~~~~~~~~l~-~l~~L~~L~Ls~n~l~---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 168 (768)
T 3rgz_A 95 GFKCSASLTSLDL--SRNSLSGPVTTLTSLG-SCSGLKFLNVSSNTLD---FPGKVSGGLKLNSLEVLDLSANSISGANV 168 (768)
T ss_dssp CCCCCTTCCEEEC--CSSEEEEEGGGGGGGG-GCTTCCEEECCSSEEE---CCSSCCSCCCCTTCSEEECCSSCCEEETH
T ss_pred hhccCCCCCEEEC--CCCcCCCcCCChHHHh-CCCCCCEEECcCCccC---CcCCHHHhccCCCCCEEECCCCccCCcCC
Confidence 5777788888888 78887777776 777 7888888888887775 55555334677888888888888777666
Q ss_pred hh---hcCCCCCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEEccCccccccccccc
Q 003888 92 WC---LANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESH 168 (788)
Q Consensus 92 ~~---l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 168 (788)
.. +.++++|++|++++|.+++.+| +.++++|++|++++|.+.+.++. ++++++|++|++++|.+.+..+..+
T Consensus 169 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l 243 (768)
T 3rgz_A 169 VGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAI 243 (768)
T ss_dssp HHHHHTTCCTTCCEEECCSSEEESCCB---CTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHT
T ss_pred hhhhhhccCCCCCEEECCCCcccccCC---cccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHHH
Confidence 65 6777888888888887774433 36777888888888877765553 7777888888888887765444332
Q ss_pred cCCCCcccccEEEccCCCCCCCCcCccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCcccccCccCcCCC
Q 003888 169 SLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSH 248 (788)
Q Consensus 169 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~~ 248 (788)
....+|++|++ .++.+.+.+|.. .+++|++|++++|.+.+.+|..++..+++|++|++++|.+++..+..+..+
T Consensus 244 ---~~l~~L~~L~L-s~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l 317 (768)
T 3rgz_A 244 ---STCTELKLLNI-SSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317 (768)
T ss_dssp ---TTCSSCCEEEC-CSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGC
T ss_pred ---hcCCCCCEEEC-CCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcC
Confidence 23346777887 666666666654 677788888888877777777765445778888888888777777777778
Q ss_pred CCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCC-CCCEEEcccCcCCCccchHHHh-cCCCCC
Q 003888 249 RWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMN-FLQILDLSNNQLTGEIPEHLAV-SCVNLE 326 (788)
Q Consensus 249 ~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~-~L~~L~l~~n~i~~~i~~~~~~-~l~~L~ 326 (788)
++|++|++++|.+++.+|...+..+++|++|++++|.+++.+|..+.+++ +|++|++++|.+++.+|..+.. .+++|+
T Consensus 318 ~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~ 397 (768)
T 3rgz_A 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397 (768)
T ss_dssp TTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCC
T ss_pred CCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCcc
Confidence 88888888888877777776555577888888888877777777777776 7888888888777666666542 156788
Q ss_pred EEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCc
Q 003888 327 FLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENH 406 (788)
Q Consensus 327 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 406 (788)
+|++++|.+++..+..+.++++|++|++++|.+++..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 398 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~ 477 (768)
T 3rgz_A 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477 (768)
T ss_dssp EEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred EEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc
Confidence 88888888777777777777888888888888777777777788888888888888877777777778888888888888
Q ss_pred ccCCccccccCCCCccEEEccCCcCCCCCCCCCC-CCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCc
Q 003888 407 LEGPIPVGFCQLYSLQILDISDNNISGSLPSCFH-PLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPN 485 (788)
Q Consensus 407 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 485 (788)
+.+..|..+..+++|++|++++|++++..|..+. +++|+.|++++|.+.+.+|.. +..+++|+.|++++|.+++.+|.
T Consensus 478 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGGCTTCCEEECCSSEEESBCCG
T ss_pred ccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCCCEEECCCCccCCcCCh
Confidence 8777777777788888888888887777776554 677888888888877777765 77778888888888877777776
Q ss_pred cccCCCCCCE----------------------------------------------EEccCCcCccccCcccCCCCCCCE
Q 003888 486 WVDGLSQLSH----------------------------------------------LILGHNNLEGEVPVQLCELNQLQL 519 (788)
Q Consensus 486 ~~~~l~~L~~----------------------------------------------L~L~~n~l~~~~~~~l~~l~~L~~ 519 (788)
.+.....+.. +++..|.+.+..|..+..+++|+.
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~ 636 (768)
T 3rgz_A 557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636 (768)
T ss_dssp GGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCE
T ss_pred HHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccE
Confidence 6544333222 223335556666777888899999
Q ss_pred EEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECC
Q 003888 520 LDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLS 599 (788)
Q Consensus 520 L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls 599 (788)
|++++|++++.+|..+.. ++.|+.|+|+
T Consensus 637 LdLs~N~l~g~ip~~l~~----------------------------------------------------l~~L~~L~Ls 664 (768)
T 3rgz_A 637 LDMSYNMLSGYIPKEIGS----------------------------------------------------MPYLFILNLG 664 (768)
T ss_dssp EECCSSCCBSCCCGGGGG----------------------------------------------------CTTCCEEECC
T ss_pred EECcCCcccccCCHHHhc----------------------------------------------------cccCCEEeCc
Confidence 999999999999887766 4489999999
Q ss_pred CCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcc
Q 003888 600 CNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSG 677 (788)
Q Consensus 600 ~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 677 (788)
+|++++.+|..++++++|+.|||++|++++.+|..++.+++|++||+++|+++|.+|.. ..+.++....+.+|+--|
T Consensus 665 ~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lc 741 (768)
T 3rgz_A 665 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLC 741 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEE
T ss_pred CCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhc
Confidence 99999999999999999999999999999999999999999999999999999999975 344555556677886444
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.8e-62 Score=565.39 Aligned_cols=595 Identities=21% Similarity=0.262 Sum_probs=323.8
Q ss_pred CCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhhcCCCCCCEEECCCCcCcCcCChhhhcCCCCC
Q 003888 46 PSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSI 125 (788)
Q Consensus 46 ~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L 125 (788)
+++++|++++|.+ ..+++.+|.++++|++|+|++|.+++..|.+|+++++|++|++++|.++ .+|...|+++++|
T Consensus 25 ~~l~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L 99 (680)
T 1ziw_A 25 TNITVLNLTHNQL----RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNL 99 (680)
T ss_dssp TTCSEEECCSSCC----CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred CCCcEEECCCCCC----CCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCC
Confidence 4556666666655 3344445555666666666666655555555566666666666666555 4554445556666
Q ss_pred CEEECcCccccccCCccccccCCCCcEEEccCccccccccccccCCCCcccccEEEccCCCCCCCCcCccccCCCCCCEE
Q 003888 126 EELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDV 205 (788)
Q Consensus 126 ~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 205 (788)
++|++++|.+.+ ++...++++++|++|++++|.+.+. .+..+..+++|++|
T Consensus 100 ~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~----------------------------~~~~~~~l~~L~~L 150 (680)
T 1ziw_A 100 TELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSST----------------------------KLGTQVQLENLQEL 150 (680)
T ss_dssp SEEECCSSCCCC-CCSCTTTTCTTCCEEECCSSCCSCC----------------------------CCCSSSCCTTCCEE
T ss_pred CEEECCCCccCc-cChhHccccCCCCEEECCCCccccc----------------------------CchhhcccccCCEE
Confidence 666666665542 2323455555566655555544321 12233445555555
Q ss_pred EcCCCcCCCCCchhHh-hcCCCCCEEEcCCCcccccCccCcCCCCCccEEEcccCcCcccCChhhhh--cCCCCcEEEcc
Q 003888 206 RLSHVNMDGEFPNWLL-ENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGD--ILPSLISFNIS 282 (788)
Q Consensus 206 ~l~~~~~~~~~~~~~~-~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~--~l~~L~~L~L~ 282 (788)
++++|.+.+..+..+. ..+++|++|++++|.+++..+..+..+++|+.++++++.+.+.....+.. ..++|+.|+++
T Consensus 151 ~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~ 230 (680)
T 1ziw_A 151 LLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230 (680)
T ss_dssp ECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECT
T ss_pred EccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEcc
Confidence 5555555544433321 13455666666666655555555555556666666555544222111110 12456666666
Q ss_pred cCcCCCCCcccccCCCC--CCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCC
Q 003888 283 MNALDSSIPSSFGNMNF--LQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLE 360 (788)
Q Consensus 283 ~n~~~~~~~~~~~~l~~--L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 360 (788)
+|.+.+..+..|.+++. |++|++++|.++ .++...+..+++|++|++++|++++..+..+.++++|++|++++|...
T Consensus 231 ~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~ 309 (680)
T 1ziw_A 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309 (680)
T ss_dssp TSCCCEECTTTTGGGGGSCCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCC
T ss_pred CCcccccChhHhhccCcCCCCEEECCCCCcC-ccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhh
Confidence 66666555555555533 666666666665 333222334566666666666666655555666666666666554332
Q ss_pred C-----cCC----ccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCC--ccccccC--CCCccEEEcc
Q 003888 361 G-----EIP----QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGP--IPVGFCQ--LYSLQILDIS 427 (788)
Q Consensus 361 ~-----~~~----~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~--l~~L~~L~l~ 427 (788)
+ .+| ..+..+++|++|++++|.+.+..+..|.++++|++|++++|.+... ....|.. .++|+.|+++
T Consensus 310 ~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~ 389 (680)
T 1ziw_A 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT 389 (680)
T ss_dssp C------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECT
T ss_pred cccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECC
Confidence 1 111 2455566666666666666655555566666666666666653211 1112221 2456666666
Q ss_pred CCcCCCCCCCCCC-CCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCc--
Q 003888 428 DNNISGSLPSCFH-PLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLE-- 504 (788)
Q Consensus 428 ~n~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-- 504 (788)
+|++++..+..+. +++|+.|++++|.+.+.++...|.++++|++|++++|++.+..+..+..+++|+.|++++|.+.
T Consensus 390 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 469 (680)
T 1ziw_A 390 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469 (680)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCT
T ss_pred CCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccccc
Confidence 6666655554443 5566666666666655555555666666666666666666666666666666666666666665
Q ss_pred cccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceee
Q 003888 505 GEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYI 584 (788)
Q Consensus 505 ~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (788)
+..|..+..+++|+.|++++|++++..+..+..
T Consensus 470 ~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~----------------------------------------------- 502 (680)
T 1ziw_A 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEG----------------------------------------------- 502 (680)
T ss_dssp TCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------------------------------------------
T ss_pred ccCCcccccCCCCCEEECCCCCCCcCChhhhcc-----------------------------------------------
Confidence 345566666666666666666666555554444
Q ss_pred ecccccccccEEECCCCcccccCc--------ccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCC
Q 003888 585 YQGKVLSLLSGLDLSCNKLIGHIP--------PQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP 656 (788)
Q Consensus 585 ~~~~~l~~L~~L~Ls~n~l~~~~~--------~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 656 (788)
+++|+.|++++|++++..+ ..|.++++|++|+|++|+++.+.+..|.++++|++|++++|++++..+
T Consensus 503 -----l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~ 577 (680)
T 1ziw_A 503 -----LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577 (680)
T ss_dssp -----CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred -----ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCH
Confidence 2356666666666654321 125666666666666666665555566666666666666666665555
Q ss_pred ccccCCCCCCEEEccCCcCcccCCCccc-ccCCCCccccCCCCCCCCCCC-C--------------------CCCCCCCC
Q 003888 657 HQLVELKTLAVFSVAYNNLSGEIPEWTA-QFATFNESSYEGNTFLCGLPL-P--------------------ICRSPATM 714 (788)
Q Consensus 657 ~~l~~l~~L~~L~l~~N~l~~~~p~~~~-~~~~~~~~~~~gn~~~c~~~l-~--------------------~c~~~~~~ 714 (788)
..|..+++|+.|++++|++++..|..+. .+.++..+++.||||.|+|+. . .|..|...
T Consensus 578 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~ 657 (680)
T 1ziw_A 578 SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHY 657 (680)
T ss_dssp TTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSSCC-------------------
T ss_pred hHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHHhcCcccccccCCcEECCchHH
Confidence 5566666666666666666666555444 456666666666666666653 1 46666666
Q ss_pred CcccCCCCCCCCc
Q 003888 715 SEASIGNERDDNL 727 (788)
Q Consensus 715 ~~~~~~~~~~~~~ 727 (788)
.|..+...+.+.+
T Consensus 658 ~g~~l~~~~~~~~ 670 (680)
T 1ziw_A 658 HGFPVRLFDTSSC 670 (680)
T ss_dssp -------------
T ss_pred CCCcccccChhhc
Confidence 6665555555444
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=8.5e-59 Score=539.83 Aligned_cols=622 Identities=23% Similarity=0.232 Sum_probs=412.3
Q ss_pred eecCCCCCCCCCccEEEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCc
Q 003888 9 LVRGQGFPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRG 88 (788)
Q Consensus 9 ~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 88 (788)
.+|. .+. +++++|+| ++|.+++..+..+. ++++|++|++++|.+. .+++.+|+++++|++|+|++|.++.
T Consensus 18 ~ip~-~~~--~~l~~L~L--s~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~ 87 (680)
T 1ziw_A 18 QVPD-DLP--TNITVLNL--THNQLRRLPAANFT-RYSQLTSLDVGFNTIS----KLEPELCQKLPMLKVLNLQHNELSQ 87 (680)
T ss_dssp SCCS-CSC--TTCSEEEC--CSSCCCCCCGGGGG-GGTTCSEEECCSSCCC----CCCTTHHHHCTTCCEEECCSSCCCC
T ss_pred cccc-ccC--CCCcEEEC--CCCCCCCcCHHHHh-CCCcCcEEECCCCccC----ccCHHHHhcccCcCEEECCCCccCc
Confidence 4674 343 79999999 99999988778898 9999999999999994 4555589999999999999999997
Q ss_pred CCChhhcCCCCCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEEccCccccccccccc
Q 003888 89 SLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESH 168 (788)
Q Consensus 89 ~~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 168 (788)
..+.+|+++++|++|++++|.++ .++...++++++|++|++++|.+.+..+ ..++++++|++|++++|.+.+..+...
T Consensus 88 l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~ 165 (680)
T 1ziw_A 88 LSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKL-GTQVQLENLQELLLSNNKIQALKSEEL 165 (680)
T ss_dssp CCTTTTTTCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCC-CSSSCCTTCCEEECCSSCCCCBCHHHH
T ss_pred cChhhhccCCCCCEEECCCCccC-ccChhHccccCCCCEEECCCCcccccCc-hhhcccccCCEEEccCCcccccCHHHh
Confidence 66668999999999999999998 6775589999999999999999986544 578899999999999998876433321
Q ss_pred cCCCCcccccEEEccCCCCCCCCcCccccCCCCCCEEEcCCCcCCCCCchhHh--hcCCCCCEEEcCCCcccccCccCcC
Q 003888 169 SLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLL--ENNTKLRQLYLVNDSLTGPFRLPIH 246 (788)
Q Consensus 169 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~~L~L~~~~l~~~~~~~l~ 246 (788)
. .....+|+.|++ .++.+.+..|..+..+++|+.++++++.+.+.....+. -..++|++|++++|.+++..+..+.
T Consensus 166 ~-~~~~~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~ 243 (680)
T 1ziw_A 166 D-IFANSSLKKLEL-SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243 (680)
T ss_dssp G-GGTTCEESEEEC-TTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred h-ccccccccEEEC-CCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh
Confidence 1 112235677777 55555555666666666777777766655432222211 1235666666666666666555555
Q ss_pred CCCC--ccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCC
Q 003888 247 SHRW--LRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVN 324 (788)
Q Consensus 247 ~~~~--L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~ 324 (788)
.++. |++|++++|.+++..+..+. .+++|++|++++|.+.+..+..|.++++|++|++++|...+.++..
T Consensus 244 ~l~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~------- 315 (680)
T 1ziw_A 244 GLKWTNLTMLDLSYNNLNVVGNDSFA-WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA------- 315 (680)
T ss_dssp GGGGSCCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------------
T ss_pred ccCcCCCCEEECCCCCcCccCccccc-CcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccc-------
Confidence 5543 66666666666543333332 3566666666666666655666666666666666655433211100
Q ss_pred CCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCC--CcccccC--CCCCCEE
Q 003888 325 LEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGK--IPRWLGN--LTGLKHI 400 (788)
Q Consensus 325 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~--~~~~~~~--l~~L~~L 400 (788)
.+..+....+..+++|++|++++|.+++..+..|.++++|++|++++|.+... ....|.. .++|+.|
T Consensus 316 ---------~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L 386 (680)
T 1ziw_A 316 ---------SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386 (680)
T ss_dssp ----------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEE
T ss_pred ---------cccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceE
Confidence 00111112333444555555555555444444444555555555554443211 1111211 1345555
Q ss_pred eCCCCcccCCccccccCCCCccEEEccCCcCCCCCC-CCC-CCCCccEEEccCcccccccCcccccCCCCCcEEEccCCc
Q 003888 401 IMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLP-SCF-HPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNR 478 (788)
Q Consensus 401 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~ 478 (788)
++++|.+.+..+.+|..+++|++|++++|.+.+..+ ..+ .+++|+.|++++|.+.+ ++...|..+++|+.|++++|.
T Consensus 387 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~L~~L~l~~n~ 465 (680)
T 1ziw_A 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ-LTRNSFALVPSLQRLMLRRVA 465 (680)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEE-CCTTTTTTCTTCCEEECTTSC
T ss_pred ECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcce-eChhhhhcCcccccchhcccc
Confidence 555555554444455555555555555555543222 222 24455555555555433 333347888999999999998
Q ss_pred CC--CCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccc
Q 003888 479 LN--GSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETS 556 (788)
Q Consensus 479 l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (788)
+. +..|..+..+++|++|++++|++++..+..|.++++|+.|++++|++.+..+..+.....
T Consensus 466 l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~---------------- 529 (680)
T 1ziw_A 466 LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI---------------- 529 (680)
T ss_dssp CBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCC----------------
T ss_pred ccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcc----------------
Confidence 86 467888999999999999999999888888999999999999999987543332221100
Q ss_pred cccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCcccc
Q 003888 557 LVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFS 636 (788)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 636 (788)
.....+++|+.|+|++|+++.+.+..|.++++|+.|+|++|+++++.+..|.
T Consensus 530 ----------------------------~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 581 (680)
T 1ziw_A 530 ----------------------------YFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN 581 (680)
T ss_dssp ----------------------------CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ----------------------------hhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhC
Confidence 0001256899999999999966666799999999999999999999888999
Q ss_pred CCCCCCEEECcCCcccccCCcccc-CCCCCCEEEccCCcCcccCC--CcccccCCCCccccCC--CCCCCCCCCC
Q 003888 637 NLKHIESLDLSYNKLNGKIPHQLV-ELKTLAVFSVAYNNLSGEIP--EWTAQFATFNESSYEG--NTFLCGLPLP 706 (788)
Q Consensus 637 ~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~l~~N~l~~~~p--~~~~~~~~~~~~~~~g--n~~~c~~~l~ 706 (788)
++++|++|++++|++++..|..+. .+++|+.+++++|++.|.++ .|+..|..-....+.+ ....|..|..
T Consensus 582 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~ 656 (680)
T 1ziw_A 582 NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPH 656 (680)
T ss_dssp TCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSSCC------------------
T ss_pred CCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHHhcCcccccccCCcEECCchH
Confidence 999999999999999988887777 78999999999999999876 5666654333333322 4567877643
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-56 Score=529.80 Aligned_cols=584 Identities=21% Similarity=0.165 Sum_probs=374.5
Q ss_pred EEEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCC-ChhhcCCCCCC
Q 003888 23 HLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSL-PWCLANMTSLR 101 (788)
Q Consensus 23 ~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~ 101 (788)
..+. +++.++.. |. + .+++++|||++|.+ ..+.+.+|.++++|++|+|++|...+.+ |.+|.++++|+
T Consensus 8 ~~dc--s~~~L~~v-P~-l---p~~l~~LdLs~N~i----~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~ 76 (844)
T 3j0a_A 8 IAFY--RFCNLTQV-PQ-V---LNTTERLLLSFNYI----RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLR 76 (844)
T ss_dssp EEEE--SCCCSSCC-CS-S---CTTCCEEEEESCCC----CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCC
T ss_pred EEEc--cCCCCCCC-CC-C---CCCcCEEECCCCcC----CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCC
Confidence 3445 77777744 44 3 36899999999998 4555558899999999999999655444 78899999999
Q ss_pred EEECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCc-cccccCCCCcEEEccCccccccccccccCCCCcccccEE
Q 003888 102 ILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISL-EPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQAL 180 (788)
Q Consensus 102 ~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L 180 (788)
+|+|++|.+.+..|. .++++++|++|++++|.+.+.++. ..++++++|++|++++|.+.+.
T Consensus 77 ~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~----------------- 138 (844)
T 3j0a_A 77 ILDLGSSKIYFLHPD-AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL----------------- 138 (844)
T ss_dssp EEECTTCCCCEECTT-SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC-----------------
T ss_pred EEECCCCcCcccCHh-HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc-----------------
Confidence 999999999844455 899999999999999988864442 3478889999999888876431
Q ss_pred EccCCCCCCCCcCccccCCCCCCEEEcCCCcCCCCCchhHhhcC--CCCCEEEcCCCcccccCccCcCCCCC------cc
Q 003888 181 SLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENN--TKLRQLYLVNDSLTGPFRLPIHSHRW------LR 252 (788)
Q Consensus 181 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l--~~L~~L~L~~~~l~~~~~~~l~~~~~------L~ 252 (788)
..+..+.++++|++|++++|.+.+..+..+ ..+ ++|+.|++++|.+.+..+..+..+.+ |+
T Consensus 139 ----------~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l-~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~ 207 (844)
T 3j0a_A 139 ----------YLHPSFGKLNSLKSIDFSSNQIFLVCEHEL-EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLE 207 (844)
T ss_dssp ----------CCCGGGGTCSSCCEEEEESSCCCCCCSGGG-HHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBS
T ss_pred ----------ccchhHhhCCCCCEEECCCCcCCeeCHHHc-ccccCCccceEECCCCccccccccchhhcCCccccCcee
Confidence 123467788899999999998888777665 344 78888899888888877766666554 88
Q ss_pred EEEcccCcCcccCChhhhhcC--CCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhc--CCCCCEE
Q 003888 253 FLDVSNNNFQGHIPVEIGDIL--PSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVS--CVNLEFL 328 (788)
Q Consensus 253 ~L~L~~n~i~~~~~~~~~~~l--~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~--l~~L~~L 328 (788)
.|++++|.+++.++..+.... .+++.+.++.+.+... +..+.+. ......+.+ .++|++|
T Consensus 208 ~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~---------------~~~~~l~-~~~~~~f~~l~~~~L~~L 271 (844)
T 3j0a_A 208 ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG---------------FGFHNIK-DPDQNTFAGLARSSVRHL 271 (844)
T ss_dssp EEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS---------------SSCSSST-TGGGTTTTTTTTSCCCEE
T ss_pred EEecCCCcCchhHHHHHHhhcCcccccceeccccccccc---------------ccccccC-CCChhhhhccccCCccEE
Confidence 888888877766666655432 3566666654332210 1122232 122222222 3678888
Q ss_pred EccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCccc
Q 003888 329 ALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLE 408 (788)
Q Consensus 329 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~ 408 (788)
++++|.+.+..+..+..+++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+.
T Consensus 272 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~ 351 (844)
T 3j0a_A 272 DLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351 (844)
T ss_dssp ECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCC
T ss_pred ECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCC
Confidence 88888888888888888888999999999888777888888889999999999888777888888889999999998888
Q ss_pred CCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCC-ccc
Q 003888 409 GPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIP-NWV 487 (788)
Q Consensus 409 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~ 487 (788)
...+..|..+++|++|++++|.+++... .++|+.+++++|.+. .++.. ..+++.|++++|++++... ..+
T Consensus 352 ~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~-~l~~~----~~~l~~L~ls~N~l~~l~~~~~~ 422 (844)
T 3j0a_A 352 IIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLV-TLPKI----NLTANLIHLSENRLENLDILYFL 422 (844)
T ss_dssp CCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCC-CCCCC----CTTCCEEECCSCCCCSSTTHHHH
T ss_pred ccChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCCCCcc-ccccc----ccccceeecccCccccCchhhhh
Confidence 7777778888899999999888764322 445566666666553 23221 2456666666666654321 123
Q ss_pred cCCCCCCEEEccCCcCccccCc-ccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchh
Q 003888 488 DGLSQLSHLILGHNNLEGEVPV-QLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPA 566 (788)
Q Consensus 488 ~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (788)
..+++|++|++++|++++..+. .+..+++|+.|++++|.+....+.......
T Consensus 423 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~--------------------------- 475 (844)
T 3j0a_A 423 LRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV--------------------------- 475 (844)
T ss_dssp TTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSC---------------------------
T ss_pred hcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhh---------------------------
Confidence 4556666666666666543322 234455666666666655422211100000
Q ss_pred hhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEEC
Q 003888 567 EKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDL 646 (788)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 646 (788)
...+++|+.|+|++|++++..|..|.++++|+.|+|++|+++++.+..+. ++|+.|++
T Consensus 476 --------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~L 533 (844)
T 3j0a_A 476 --------------------FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDI 533 (844)
T ss_dssp --------------------SSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEE
T ss_pred --------------------hcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEEC
Confidence 00123455555555555555555555555555555555555554444443 45555555
Q ss_pred cCCcccccCCccccCCCCCCEEEccCCcCcccCCCcccccCCCCccccCCCCCCCCCCC-CCCCCCCCCCcccCCCCCCC
Q 003888 647 SYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPL-PICRSPATMSEASIGNERDD 725 (788)
Q Consensus 647 s~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~gn~~~c~~~l-~~c~~~~~~~~~~~~~~~~~ 725 (788)
++|++++..|..+ ++|+.+++++|++.|.++- ..+..+...++..+|+.+. ..|..|....+.++.....+
T Consensus 534 s~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~-----~~f~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~ 605 (844)
T 3j0a_A 534 SRNQLLAPNPDVF---VSLSVLDITHNKFICECEL-----STFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTE 605 (844)
T ss_dssp EEECCCCCCSCCC---SSCCEEEEEEECCCCSSSC-----CSHHHHHHHTTTTTCCCGGGCCCSSCSSSCSCCTTTCCCC
T ss_pred CCCcCCCCChhHh---CCcCEEEecCCCccccccc-----HHHHHHHHhcCcccccccccCccCCchhhCCCccccCccc
Confidence 5555555444333 2445555555555543321 0111111112222332221 26888988888777666665
Q ss_pred Ccc
Q 003888 726 NLI 728 (788)
Q Consensus 726 ~~~ 728 (788)
.|.
T Consensus 606 ~C~ 608 (844)
T 3j0a_A 606 GCD 608 (844)
T ss_dssp CC-
T ss_pred cCC
Confidence 554
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.2e-55 Score=502.85 Aligned_cols=559 Identities=19% Similarity=0.217 Sum_probs=340.3
Q ss_pred EEEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhhcCCCCCCE
Q 003888 23 HLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRI 102 (788)
Q Consensus 23 ~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 102 (788)
.++. ++..++ .+|..+. +++++|++++|.+ ..+++.+|+++++|++|+|++|++++..|.+|+++++|++
T Consensus 16 ~~~c--~~~~l~-~iP~~l~---~~l~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 85 (606)
T 3t6q_A 16 TYNC--ENLGLN-EIPGTLP---NSTECLEFSFNVL----PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDT 85 (606)
T ss_dssp EEEC--TTSCCS-SCCTTSC---TTCCEEECTTCCC----SEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred eEEC--CCCCcc-cCcCCCC---CcCcEEEccCCcc----CcCChhHhccCccceEEECCCCccceeChhhccCccccCe
Confidence 4555 666665 4565555 4788888888888 4555557888888888888888888878888888888888
Q ss_pred EECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEEccCccccccccccccCCCCcccccEEEc
Q 003888 103 LDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSL 182 (788)
Q Consensus 103 L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l 182 (788)
|++++|.+++..|. .++++++|++|++++|.+++. +...++++++|++|++++|.+.+.
T Consensus 86 L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~l-~~~~~~~l~~L~~L~L~~n~l~~~------------------- 144 (606)
T 3t6q_A 86 LVLTANPLIFMAET-ALSGPKALKHLFFIQTGISSI-DFIPLHNQKTLESLYLGSNHISSI------------------- 144 (606)
T ss_dssp EECTTCCCSEECTT-TTSSCTTCCEEECTTSCCSCG-GGSCCTTCTTCCEEECCSSCCCCC-------------------
T ss_pred eeCCCCcccccChh-hhcccccccEeeccccCcccC-CcchhccCCcccEEECCCCccccc-------------------
Confidence 88888888744444 788888888888888888743 223577788888888888766431
Q ss_pred cCCCCCCCCcCccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCC--EEEcCCCcccccCccCcCCCCCccEEEcccCc
Q 003888 183 SSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLR--QLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNN 260 (788)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~--~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~n~ 260 (788)
..|... .+++|++|++++|.+.+..+..+ +.+++|+ .|++++|.+++..+..+.. .+|+.|++++|.
T Consensus 145 --------~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~ 213 (606)
T 3t6q_A 145 --------KLPKGF-PTEKLKVLDFQNNAIHYLSKEDM-SSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ 213 (606)
T ss_dssp --------CCCTTC-CCTTCCEEECCSSCCCEECHHHH-HTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS
T ss_pred --------Cccccc-CCcccCEEEcccCcccccChhhh-hhhcccceeEEecCCCccCccChhHhhh-ccccccccCCch
Confidence 112222 26777888888877776555443 5677777 6777777777655554433 456666666664
Q ss_pred CcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCC--CCCEEEccCccCCCc
Q 003888 261 FQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCV--NLEFLALSNNNLKGH 338 (788)
Q Consensus 261 i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~--~L~~L~L~~n~i~~~ 338 (788)
. ++..+ ..+.+++...+....+. .+... .++...+..+. +|++|++++|.++++
T Consensus 214 ~---~~~~~-~~l~~~~l~~l~~~~~~-----------~~~~~---------~i~~~~~~~l~~~~L~~L~l~~n~l~~~ 269 (606)
T 3t6q_A 214 N---LLVIF-KGLKNSTIQSLWLGTFE-----------DMDDE---------DISPAVFEGLCEMSVESINLQKHYFFNI 269 (606)
T ss_dssp C---HHHHH-HHTTTCEEEEEECCCCT-----------TSCCC---------CCCGGGGGGGGGSEEEEEECTTCCCSSC
T ss_pred h---HHHHh-hhccccchhheechhhc-----------ccccc---------ccChhHhchhhcCceeEEEeecCccCcc
Confidence 1 12211 11333333322211111 11111 11122222222 567777777777776
Q ss_pred CcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccc-cccC
Q 003888 339 MFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPV-GFCQ 417 (788)
Q Consensus 339 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~ 417 (788)
.+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+. .+..
T Consensus 270 ~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 348 (606)
T 3t6q_A 270 SSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348 (606)
T ss_dssp CTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT
T ss_pred CHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhc
Confidence 6666667777777777777776 5666677777777777777777665566677777777777777766644433 3666
Q ss_pred CCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEE
Q 003888 418 LYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLI 497 (788)
Q Consensus 418 l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 497 (788)
+++|++|++++|.+.+... .+ ..+..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus 349 l~~L~~L~l~~n~l~~~~~---------------------~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 406 (606)
T 3t6q_A 349 LENLRELDLSHDDIETSDC---------------------CN-LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406 (606)
T ss_dssp CTTCCEEECCSSCCCEEEE---------------------ST-TTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEE
T ss_pred cCcCCEEECCCCccccccC---------------------cc-hhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEE
Confidence 7777777777776653320 01 1144555555555555555555555555555555555
Q ss_pred ccCCcCccccCc-ccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceee
Q 003888 498 LGHNNLEGEVPV-QLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEF 576 (788)
Q Consensus 498 L~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (788)
+++|++++..+. .+..+++|+.|++++|.+.+..|..+..
T Consensus 407 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------------------------------- 447 (606)
T 3t6q_A 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG--------------------------------------- 447 (606)
T ss_dssp CTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT---------------------------------------
T ss_pred CCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhC---------------------------------------
Confidence 555555544332 2555555555555555555444444433
Q ss_pred eeccceeeecccccccccEEECCCCccccc---CcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccc
Q 003888 577 TTKNIAYIYQGKVLSLLSGLDLSCNKLIGH---IPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG 653 (788)
Q Consensus 577 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 653 (788)
+++|++|++++|++.+. .+..+..+++|++|++++|++++..|..|..+++|++|++++|++++
T Consensus 448 -------------l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 514 (606)
T 3t6q_A 448 -------------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514 (606)
T ss_dssp -------------CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCG
T ss_pred -------------CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCc
Confidence 23555555555555441 22345556666666666666665555566666666666666666665
Q ss_pred cCCccccCCCCCCEEEccCCcCcccCCCcccccCCCCccccCCCCCCCCCCC-------------------CCCCCCCCC
Q 003888 654 KIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPL-------------------PICRSPATM 714 (788)
Q Consensus 654 ~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~gn~~~c~~~l-------------------~~c~~~~~~ 714 (788)
..|..+..++.| .|++++|++++..|..+..+.+++.+++.|||+.|+|+. ..|..|...
T Consensus 515 ~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~~~~~~~~~~~~~~~C~~p~~~ 593 (606)
T 3t6q_A 515 SSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLL 593 (606)
T ss_dssp GGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHHHHCGGGEECGGGCBEEESGGG
T ss_pred CChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHHHHHhCcccccCCCCCeeCCchHh
Confidence 555566666666 666666666655555555555566666666666666542 157777777
Q ss_pred CcccCCCCC
Q 003888 715 SEASIGNER 723 (788)
Q Consensus 715 ~~~~~~~~~ 723 (788)
.|..+...+
T Consensus 594 ~g~~l~~~~ 602 (606)
T 3t6q_A 594 RGVRLSDVT 602 (606)
T ss_dssp TTCBGGGCC
T ss_pred CCCeeeeee
Confidence 777555443
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.1e-53 Score=490.13 Aligned_cols=572 Identities=20% Similarity=0.167 Sum_probs=380.4
Q ss_pred cEEEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhhcCCCCCC
Q 003888 22 DHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLR 101 (788)
Q Consensus 22 ~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 101 (788)
++++. +++.++. +|..+. +++++|++++|.+ ..+++.+|.++++|++|++++|.+++..|.+|.++++|+
T Consensus 14 ~~~~c--~~~~l~~-ip~~~~---~~l~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~ 83 (606)
T 3vq2_A 14 ITYQC--MDQKLSK-VPDDIP---SSTKNIDLSFNPL----KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 83 (606)
T ss_dssp TEEEC--TTSCCSS-CCTTSC---TTCCEEECTTSCC----CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CceEc--cCCCccc-CCCCCC---CCcCEEECCCCCc----CEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcC
Confidence 45566 7776663 444333 6788888888887 445555777888888888888888777777788888888
Q ss_pred EEECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEEccCccccccccccccCCCCcccccEEE
Q 003888 102 ILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALS 181 (788)
Q Consensus 102 ~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~ 181 (788)
+|++++|.+++..|. .++++++|++|++++|.+.+..+ ..++++++|++|++++|.+.+
T Consensus 84 ~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~------------------- 142 (606)
T 3vq2_A 84 NLILTGNPIQSFSPG-SFSGLTSLENLVAVETKLASLES-FPIGQLITLKKLNVAHNFIHS------------------- 142 (606)
T ss_dssp EEECTTCCCCCCCTT-SSTTCTTCCEEECTTSCCCCSSS-SCCTTCTTCCEEECCSSCCCC-------------------
T ss_pred EeECCCCcccccChh-hcCCcccCCEEEccCCccccccc-cccCCCCCCCEEeCCCCcccc-------------------
Confidence 888888888733344 77888888888888887764332 357777778888777776532
Q ss_pred ccCCCCCCCCcCccccCCCCCCEEEcCCCcCCCCCchhHhhcCCC----CCEEEcCCCcccccCccCcCCCCCccEEEcc
Q 003888 182 LSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTK----LRQLYLVNDSLTGPFRLPIHSHRWLRFLDVS 257 (788)
Q Consensus 182 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~----L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~ 257 (788)
..+|..+..+++|++|++++|.+.+..+..+ +.+++ ++.|++++|.+++..+..+... +|+.|+++
T Consensus 143 --------~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~ 212 (606)
T 3vq2_A 143 --------CKLPAYFSNLTNLVHVDLSYNYIQTITVNDL-QFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLR 212 (606)
T ss_dssp --------CCCCGGGGTCTTCCEEECCSSCCCEECTTTT-HHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEE
T ss_pred --------eechHhHhhcCCCCEEEccCCcceecChhhh-hhhhccccccceeeccCCCcceeCcccccCc-eeeeeecc
Confidence 1346677778888888888887776555433 33333 4578888888887666655554 78888888
Q ss_pred cCcCcccCChhhhhcCCCCcEEEcccCcCCC------CCcccccCCC--CCCEEEc-ccCcCCCccchHHHhcCCCCCEE
Q 003888 258 NNNFQGHIPVEIGDILPSLISFNISMNALDS------SIPSSFGNMN--FLQILDL-SNNQLTGEIPEHLAVSCVNLEFL 328 (788)
Q Consensus 258 ~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~------~~~~~~~~l~--~L~~L~l-~~n~i~~~i~~~~~~~l~~L~~L 328 (788)
+|.+++.........++.++.+++..+.+.. ..+..+.++. .++.+++ ..+.+.+.+|. +..+++|+.|
T Consensus 213 ~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L 290 (606)
T 3vq2_A 213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAM 290 (606)
T ss_dssp SCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEE
T ss_pred CCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc--cccCCCCCEE
Confidence 8887644444444557788887776544332 1111222222 3445555 55566655555 3457777777
Q ss_pred EccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCccc
Q 003888 329 ALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLE 408 (788)
Q Consensus 329 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~ 408 (788)
++++|.++... .+..+++|++|++++|.+. .+| .+ .+++|++|++++|...+.. .+..+++|++|++++|.+.
T Consensus 291 ~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~ 363 (606)
T 3vq2_A 291 SLAGVSIKYLE--DVPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALS 363 (606)
T ss_dssp EEESCCCCCCC--CCCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEE
T ss_pred EecCccchhhh--hccccccCCEEEcccccCc-ccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccC
Confidence 77777776543 5667777777777777773 556 34 7777777777777543222 4556777777777777776
Q ss_pred CCc--cccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCC-c
Q 003888 409 GPI--PVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIP-N 485 (788)
Q Consensus 409 ~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~ 485 (788)
+.. +..+..+++|++|++++|.+.+ ++ ..+..+++|+.|++++|++.+..+ .
T Consensus 364 ~~~~~~~~~~~~~~L~~L~L~~n~l~~------------------------~~-~~~~~l~~L~~L~l~~n~l~~~~~~~ 418 (606)
T 3vq2_A 364 FSGCCSYSDLGTNSLRHLDLSFNGAII------------------------MS-ANFMGLEELQHLDFQHSTLKRVTEFS 418 (606)
T ss_dssp EEEECCHHHHCCSCCCEEECCSCSEEE------------------------EC-CCCTTCTTCCEEECTTSEEESTTTTT
T ss_pred CCcchhhhhccCCcccEeECCCCcccc------------------------ch-hhccCCCCCCeeECCCCccCCccChh
Confidence 542 5666677777777777776542 22 226778888888888888887766 5
Q ss_pred cccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCC-CCCCCCcCcccccccCCCCCCCCcccccccccccc
Q 003888 486 WVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHG-PIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMI 564 (788)
Q Consensus 486 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (788)
.+..+++|++|++++|.+++..|..+..+++|++|++++|++.+ ..|..+..
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--------------------------- 471 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN--------------------------- 471 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT---------------------------
T ss_pred hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc---------------------------
Confidence 77888889999999888888888888888888888888888876 34555544
Q ss_pred hhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEE
Q 003888 565 PAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESL 644 (788)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 644 (788)
+++|+.|++++|++++..|..|+.+++|++|++++|++++..|..|+++++|++|
T Consensus 472 -------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 526 (606)
T 3vq2_A 472 -------------------------TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTL 526 (606)
T ss_dssp -------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEE
T ss_pred -------------------------CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEE
Confidence 4478888888888888888888888888888888888888888888888888888
Q ss_pred ECcCCcccccCCccccCCC-CCCEEEccCCcCcccCCC-cccccCCCCccccCCCCCCCCCCCCCCCCCCCCCcccCCCC
Q 003888 645 DLSYNKLNGKIPHQLVELK-TLAVFSVAYNNLSGEIPE-WTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNE 722 (788)
Q Consensus 645 ~Ls~N~l~~~~p~~l~~l~-~L~~L~l~~N~l~~~~p~-~~~~~~~~~~~~~~gn~~~c~~~l~~c~~~~~~~~~~~~~~ 722 (788)
++++|+++ .+|..+..++ +|++|++++|++.|..+. |+.+|..-....+. +.....|..|....+..+..+
T Consensus 527 ~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~~~~~~~~------~~~~~~C~~p~~~~~~~l~~~ 599 (606)
T 3vq2_A 527 DCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLV------NVEQMTCATPVEMNTSLVLDF 599 (606)
T ss_dssp ECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTTTSSSSBS------SGGGCCCC-------------
T ss_pred ECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccHHHHHHHHcCccccc------CCccceeCCChHhCCCEeeec
Confidence 88888887 5666677776 588888888888876653 22222111000010 111226888888877777666
Q ss_pred CCCCc
Q 003888 723 RDDNL 727 (788)
Q Consensus 723 ~~~~~ 727 (788)
+.+.|
T Consensus 600 ~~~~c 604 (606)
T 3vq2_A 600 NNSTC 604 (606)
T ss_dssp -----
T ss_pred ccccC
Confidence 65543
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-53 Score=503.75 Aligned_cols=515 Identities=19% Similarity=0.149 Sum_probs=367.6
Q ss_pred CCCCccEEEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhhcC
Q 003888 17 HFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLAN 96 (788)
Q Consensus 17 ~~~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~ 96 (788)
-.+++++|+| ++|.+++..+..+. ++++|++|+|++|... ..+++.+|+++++|++|+|++|.+++..|.+|++
T Consensus 22 lp~~l~~LdL--s~N~i~~i~~~~~~-~l~~L~~LdLs~n~~~---~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~ 95 (844)
T 3j0a_A 22 VLNTTERLLL--SFNYIRTVTASSFP-FLEQLQLLELGSQYTP---LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG 95 (844)
T ss_dssp SCTTCCEEEE--ESCCCCEECSSSCS-SCCSCSEEEECTTCCC---CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCS
T ss_pred CCCCcCEEEC--CCCcCCccChhHCc-ccccCeEEeCCCCCCc---cccCHHHhcCCCCCCEEECCCCcCcccCHhHccC
Confidence 4579999999 99999988888999 9999999999999765 7786778999999999999999999889999999
Q ss_pred CCCCCEEECCCCcCcCcCCh-hhhcCCCCCCEEECcCccccccCCccccccCCCCcEEEccCccccccccccccCCCCcc
Q 003888 97 MTSLRILDVSSNQLTGSISS-SPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNF 175 (788)
Q Consensus 97 l~~L~~L~Ls~n~~~~~i~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 175 (788)
+++|++|+|++|.+++.+|. ..++++++|++|++++|.+.+..+...++++++|++|++++|.+.+.
T Consensus 96 l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~------------ 163 (844)
T 3j0a_A 96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV------------ 163 (844)
T ss_dssp CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC------------
T ss_pred CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee------------
Confidence 99999999999999876665 24899999999999999998765556799999999999999987542
Q ss_pred cccEEEccCCCCCCCCcCccccCC--CCCCEEEcCCCcCCCCCchhHhhcCC------CCCEEEcCCCcccccCccCcCC
Q 003888 176 QLQALSLSSGYGDGVTFPKFLYHQ--HDLEDVRLSHVNMDGEFPNWLLENNT------KLRQLYLVNDSLTGPFRLPIHS 247 (788)
Q Consensus 176 ~L~~L~l~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~l~------~L~~L~L~~~~l~~~~~~~l~~ 247 (788)
.+..+..+ ++|+.|++++|.+.+..|..+ ..++ .|+.|++++|.+++..+..+..
T Consensus 164 ----------------~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 226 (844)
T 3j0a_A 164 ----------------CEHELEPLQGKTLSFFSLAANSLYSRVSVDW-GKCMNPFRNMVLEILDVSGNGWTVDITGNFSN 226 (844)
T ss_dssp ----------------CSGGGHHHHHCSSCCCEECCSBSCCCCCCCC-CSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGG
T ss_pred ----------------CHHHcccccCCccceEECCCCccccccccch-hhcCCccccCceeEEecCCCcCchhHHHHHHh
Confidence 23334444 789999999999988777653 3344 3999999999988776665543
Q ss_pred ---CCCccEEEcccCcCcccC--------Chhhhhc--CCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCcc
Q 003888 248 ---HRWLRFLDVSNNNFQGHI--------PVEIGDI--LPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEI 314 (788)
Q Consensus 248 ---~~~L~~L~L~~n~i~~~~--------~~~~~~~--l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i 314 (788)
...++.+.++.+...... ....+.. .++|+.|++++|.+.+..+..|..+++|++|++++|.++
T Consensus 227 ~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~--- 303 (844)
T 3j0a_A 227 AISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN--- 303 (844)
T ss_dssp TSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCC---
T ss_pred hcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCC---
Confidence 357888888754332110 0011111 134555555555555444444555555555555555554
Q ss_pred chHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCC
Q 003888 315 PEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNL 394 (788)
Q Consensus 315 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l 394 (788)
+..+..+.++++|++|++++|.+++..+..+..+++|+.|++++|.+....+..|..+
T Consensus 304 ----------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l 361 (844)
T 3j0a_A 304 ----------------------KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL 361 (844)
T ss_dssp ----------------------EECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSC
T ss_pred ----------------------CCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCC
Confidence 4444444444444444444444444444444444555555555554444444444445
Q ss_pred CCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEc
Q 003888 395 TGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDL 474 (788)
Q Consensus 395 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L 474 (788)
++|++|++++|.+++. ..+++|+.|++++|+++..... ..+++.+++++|.+.+.-....+..+++|+.|++
T Consensus 362 ~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~L 433 (844)
T 3j0a_A 362 EKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVTLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILIL 433 (844)
T ss_dssp CCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCCCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEE
T ss_pred CCCCEEECCCCCCCcc-----cCCCCcchhccCCCCccccccc---ccccceeecccCccccCchhhhhhcCCccceeeC
Confidence 5555555555544421 1144555555555555422111 2345555555555544322223568899999999
Q ss_pred cCCcCCCCCCc-cccCCCCCCEEEccCCcCc-----cccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCC
Q 003888 475 SYNRLNGSIPN-WVDGLSQLSHLILGHNNLE-----GEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSY 548 (788)
Q Consensus 475 ~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~ 548 (788)
++|++++..+. .+..+++|+.|++++|.++ +..+..|.++++|+.|++++|++++..|..|..
T Consensus 434 s~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----------- 502 (844)
T 3j0a_A 434 NQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSH----------- 502 (844)
T ss_dssp ESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSS-----------
T ss_pred CCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccc-----------
Confidence 99999865443 4566899999999999997 344567889999999999999999888887766
Q ss_pred CCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCC
Q 003888 549 SLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLT 628 (788)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 628 (788)
+++|+.|+|++|++++..+..+. ++|+.|+|++|+++
T Consensus 503 -----------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~ 539 (844)
T 3j0a_A 503 -----------------------------------------LTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLL 539 (844)
T ss_dssp -----------------------------------------CCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCC
T ss_pred -----------------------------------------hhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCC
Confidence 44899999999999988777776 89999999999999
Q ss_pred ccCCccccCCCCCCEEECcCCcccccCC
Q 003888 629 GLIPSTFSNLKHIESLDLSYNKLNGKIP 656 (788)
Q Consensus 629 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 656 (788)
+..|+.| .+|+.|++++|++.+..+
T Consensus 540 ~~~~~~~---~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 540 APNPDVF---VSLSVLDITHNKFICECE 564 (844)
T ss_dssp CCCSCCC---SSCCEEEEEEECCCCSSS
T ss_pred CCChhHh---CCcCEEEecCCCcccccc
Confidence 9988876 479999999999987654
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.3e-53 Score=483.32 Aligned_cols=524 Identities=23% Similarity=0.241 Sum_probs=355.1
Q ss_pred eecCCCCCCCCCccEEEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCc
Q 003888 9 LVRGQGFPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRG 88 (788)
Q Consensus 9 ~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 88 (788)
.+|. .+. +++++|+| ++|.+++..+.++. ++++|++|++++|.+ ..+.+.+|+++++|++|+|++|++++
T Consensus 26 ~iP~-~l~--~~l~~L~L--s~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~Ls~n~l~~ 95 (606)
T 3t6q_A 26 EIPG-TLP--NSTECLEF--SFNVLPTIQNTTFS-RLINLTFLDLTRCQI----YWIHEDTFQSQHRLDTLVLTANPLIF 95 (606)
T ss_dssp SCCT-TSC--TTCCEEEC--TTCCCSEECTTTST-TCTTCSEEECTTCCC----CEECTTTTTTCTTCCEEECTTCCCSE
T ss_pred cCcC-CCC--CcCcEEEc--cCCccCcCChhHhc-cCccceEEECCCCcc----ceeChhhccCccccCeeeCCCCcccc
Confidence 4664 344 37999999 99999988888999 999999999999999 45655689999999999999999998
Q ss_pred CCChhhcCCCCCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEEccCccccccccccc
Q 003888 89 SLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESH 168 (788)
Q Consensus 89 ~~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 168 (788)
..|.+|+++++|++|++++|.++ .++...++++++|++|++++|.+.+... ..+..+++|++|++++|.+.+.
T Consensus 96 ~~~~~~~~l~~L~~L~L~~n~i~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~----- 168 (606)
T 3t6q_A 96 MAETALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISSIKL-PKGFPTEKLKVLDFQNNAIHYL----- 168 (606)
T ss_dssp ECTTTTSSCTTCCEEECTTSCCS-CGGGSCCTTCTTCCEEECCSSCCCCCCC-CTTCCCTTCCEEECCSSCCCEE-----
T ss_pred cChhhhcccccccEeeccccCcc-cCCcchhccCCcccEEECCCCcccccCc-ccccCCcccCEEEcccCccccc-----
Confidence 88999999999999999999998 6644479999999999999999985322 3455699999999999876532
Q ss_pred cCCCCcccccEEEccCCCCCCCCcCccccCCCCCC--EEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCcccccCccCcC
Q 003888 169 SLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLE--DVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIH 246 (788)
Q Consensus 169 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~--~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~ 246 (788)
.+..+..+++|+ .+++++|.+.+..|..+ ....|++|++++|... +..+.
T Consensus 169 -----------------------~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~--~~~~L~~L~l~~~~~~---~~~~~ 220 (606)
T 3t6q_A 169 -----------------------SKEDMSSLQQATNLSLNLNGNDIAGIEPGAF--DSAVFQSLNFGGTQNL---LVIFK 220 (606)
T ss_dssp -----------------------CHHHHHTTTTCCSEEEECTTCCCCEECTTTT--TTCEEEEEECTTCSCH---HHHHH
T ss_pred -----------------------ChhhhhhhcccceeEEecCCCccCccChhHh--hhccccccccCCchhH---HHHhh
Confidence 244566788888 89999999988777664 4578999999988622 23333
Q ss_pred CCCCccEEEcccCcCcc----cCChhhhhcCC--CCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHh
Q 003888 247 SHRWLRFLDVSNNNFQG----HIPVEIGDILP--SLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAV 320 (788)
Q Consensus 247 ~~~~L~~L~L~~n~i~~----~~~~~~~~~l~--~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~ 320 (788)
.+.+++...+.-..+.+ .++...+..+. +|++|++++|.+++..+..|+++++|++|++++|.++ .+|..+.
T Consensus 221 ~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~- 298 (606)
T 3t6q_A 221 GLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLV- 298 (606)
T ss_dssp HTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCC-
T ss_pred hccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhc-
Confidence 34444433333222211 22222222221 5666677766666666666666666666666666665 5555443
Q ss_pred cCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCc-cccCCCCCCEEEccCCcCCCCCcccccCCCCCCE
Q 003888 321 SCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQ-SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKH 399 (788)
Q Consensus 321 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 399 (788)
.+++|++|++++|.+++..+..+..+++|++|++++|.+.+.++. .+..+++|++|++++|.+
T Consensus 299 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l---------------- 362 (606)
T 3t6q_A 299 GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI---------------- 362 (606)
T ss_dssp SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCC----------------
T ss_pred ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcc----------------
Confidence 455566666655555555455555555555555555554433322 244455555555555544
Q ss_pred EeCCCCcccCCc--cccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCC
Q 003888 400 IIMPENHLEGPI--PVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYN 477 (788)
Q Consensus 400 L~l~~n~~~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n 477 (788)
.+.. +..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|
T Consensus 363 --------~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------------------~~~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 363 --------ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT------------------------EAFKECPQLELLDLAFT 410 (606)
T ss_dssp --------CEEEESTTTTTTCTTCCEEECCSCSCEEECT------------------------TTTTTCTTCSEEECTTC
T ss_pred --------ccccCcchhcccCCCCCEEECCCCcCCcCCH------------------------HHhcCCccCCeEECCCC
Confidence 4332 3344455555555555554432211 11444455555555555
Q ss_pred cCCCCCCc-cccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCC---CCCcCcccccccCCCCCCCCc
Q 003888 478 RLNGSIPN-WVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIP---PCFDNTTLHESSNNSYSLKPF 553 (788)
Q Consensus 478 ~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~---~~~~~~~~~~~~~~~~~~~~~ 553 (788)
++++..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|++.+... ..+.
T Consensus 411 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~----------------- 473 (606)
T 3t6q_A 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ----------------- 473 (606)
T ss_dssp CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGG-----------------
T ss_pred cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhc-----------------
Confidence 55444332 35556666666666666665555566666666666666666543110 1111
Q ss_pred ccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCc
Q 003888 554 ETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPS 633 (788)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~ 633 (788)
.+++|+.|++++|++++..|..|..+++|++|+|++|++++..|+
T Consensus 474 -----------------------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 518 (606)
T 3t6q_A 474 -----------------------------------TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518 (606)
T ss_dssp -----------------------------------GCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGG
T ss_pred -----------------------------------cCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChh
Confidence 145778888888888877788888888888888888888888888
Q ss_pred cccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCC
Q 003888 634 TFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIP 680 (788)
Q Consensus 634 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p 680 (788)
.+.++++| +|++++|++++..|..+..+++|+.+++++|++.|.++
T Consensus 519 ~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 519 ALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp GGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred HhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 88888888 88888888888888888888888888999888887665
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.5e-49 Score=455.82 Aligned_cols=531 Identities=20% Similarity=0.216 Sum_probs=393.3
Q ss_pred eecCCCCCCCCCccEEEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCc
Q 003888 9 LVRGQGFPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRG 88 (788)
Q Consensus 9 ~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 88 (788)
.+|. .+. +++++|+| ++|++++..+..+. ++++|++|++++|.+ ..+++.+|.++++|++|+|++|++++
T Consensus 25 ~ip~-~~~--~~l~~L~L--s~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l----~~i~~~~~~~l~~L~~L~Ls~n~l~~ 94 (606)
T 3vq2_A 25 KVPD-DIP--SSTKNIDL--SFNPLKILKSYSFS-NFSELQWLDLSRCEI----ETIEDKAWHGLHHLSNLILTGNPIQS 94 (606)
T ss_dssp SCCT-TSC--TTCCEEEC--TTSCCCEECTTTTT-TCTTCCEEECTTCCC----CEECTTTTTTCTTCCEEECTTCCCCC
T ss_pred cCCC-CCC--CCcCEEEC--CCCCcCEeChhhcc-CCccCcEEeCCCCcc----cccCHHHhhchhhcCEeECCCCcccc
Confidence 4664 233 78999999 99999988888899 999999999999999 55666689999999999999999998
Q ss_pred CCChhhcCCCCCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCccccc-cCCccccccCCCCcEEEccCcccccccccc
Q 003888 89 SLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQI-PISLEPLFNHSRLKIFDAANNEIKAEITES 167 (788)
Q Consensus 89 ~~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 167 (788)
..|.+|+++++|++|++++|.++ .++...++++++|++|++++|.+.+ .+| ..++++++|++|++++|.+.+..+..
T Consensus 95 ~~p~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~lp-~~~~~l~~L~~L~Ls~n~l~~~~~~~ 172 (606)
T 3vq2_A 95 FSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLP-AYFSNLTNLVHVDLSYNYIQTITVND 172 (606)
T ss_dssp CCTTSSTTCTTCCEEECTTSCCC-CSSSSCCTTCTTCCEEECCSSCCCCCCCC-GGGGTCTTCCEEECCSSCCCEECTTT
T ss_pred cChhhcCCcccCCEEEccCCccc-cccccccCCCCCCCEEeCCCCcccceech-HhHhhcCCCCEEEccCCcceecChhh
Confidence 88999999999999999999998 6664479999999999999999975 344 57999999999999999887643322
Q ss_pred ccCCCCcc-cccEEEccCCCCCCCCcCccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCcccccCccCcC
Q 003888 168 HSLTAPNF-QLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIH 246 (788)
Q Consensus 168 ~~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~ 246 (788)
+....... .+..+++ .++.+.. ++.......+|+.|++++|.+.+......+.+++.++.+++..+.+.+..
T Consensus 173 ~~~l~~L~~~l~~L~l-~~n~l~~-~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~----- 245 (606)
T 3vq2_A 173 LQFLRENPQVNLSLDM-SLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER----- 245 (606)
T ss_dssp THHHHHCTTCCCEEEC-TTCCCCE-ECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC-----
T ss_pred hhhhhccccccceeec-cCCCcce-eCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCC-----
Confidence 11110000 1234555 4443332 22222222355555555555543333333345555555554433222100
Q ss_pred CCCCccEEEcccCcCcccCChhhhhcCCCCcEEEc-ccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCC
Q 003888 247 SHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNI-SMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNL 325 (788)
Q Consensus 247 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L-~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L 325 (788)
.+. .+.+..+..+.. -.++.+++ ..+.+.+..|. +..+++|+.|++++|.+. .+| .+ ..+++|
T Consensus 246 ---~l~-------~~~~~~~~~l~~--l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l-~~~~~L 309 (606)
T 3vq2_A 246 ---NLE-------IFEPSIMEGLCD--VTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DV-PKHFKW 309 (606)
T ss_dssp ---CCS-------CCCGGGGTTGGG--SEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CC-CTTCCC
T ss_pred ---ccc-------ccChHHhhhhhh--ccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hc-cccccC
Confidence 000 000011111111 14566666 55666666666 777888888888888876 666 33 357788
Q ss_pred CEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCC--CcccccCCCCCCEEeCC
Q 003888 326 EFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGK--IPRWLGNLTGLKHIIMP 403 (788)
Q Consensus 326 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~l~ 403 (788)
++|++++|.+..+ + .+ .+++|++|++++|...+.. .+..+++|++|++++|.+++. .+..+..+++|++|+++
T Consensus 310 ~~L~l~~n~l~~l-p-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~ 384 (606)
T 3vq2_A 310 QSLSIIRCQLKQF-P-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS 384 (606)
T ss_dssp SEEEEESCCCSSC-C-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECC
T ss_pred CEEEcccccCccc-c-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECC
Confidence 8888888888443 3 44 7888888888888655333 567888899999998888755 26778888999999999
Q ss_pred CCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCC
Q 003888 404 ENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSI 483 (788)
Q Consensus 404 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 483 (788)
+|.+.+ .|..+..+++|++|++++|.+.+.. +...+..+++|++|++++|.+++..
T Consensus 385 ~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~-----------------------~~~~~~~l~~L~~L~l~~n~l~~~~ 440 (606)
T 3vq2_A 385 FNGAII-MSANFMGLEELQHLDFQHSTLKRVT-----------------------EFSAFLSLEKLLYLDISYTNTKIDF 440 (606)
T ss_dssp SCSEEE-ECCCCTTCTTCCEEECTTSEEESTT-----------------------TTTTTTTCTTCCEEECTTSCCEECC
T ss_pred CCcccc-chhhccCCCCCCeeECCCCccCCcc-----------------------ChhhhhccccCCEEECcCCCCCccc
Confidence 998874 5577888889999999888876432 2223677889999999999998888
Q ss_pred CccccCCCCCCEEEccCCcCcc-ccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccc
Q 003888 484 PNWVDGLSQLSHLILGHNNLEG-EVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSM 562 (788)
Q Consensus 484 ~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (788)
|..+..+++|++|++++|++++ ..|..+..+++|+.|++++|++++..|..+..
T Consensus 441 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------------------------- 495 (606)
T 3vq2_A 441 DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT------------------------- 495 (606)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT-------------------------
T ss_pred hhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcc-------------------------
Confidence 8889999999999999999987 47888999999999999999998877776655
Q ss_pred cchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCC-CC
Q 003888 563 MIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLK-HI 641 (788)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L 641 (788)
+++|+.|++++|++++..|..|+++++|++|+|++|+++.+ |..+..++ +|
T Consensus 496 ---------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-p~~~~~l~~~L 547 (606)
T 3vq2_A 496 ---------------------------LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS-KGILQHFPKSL 547 (606)
T ss_dssp ---------------------------CTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCE-ESCGGGSCTTC
T ss_pred ---------------------------cccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCccc-CHhHhhhcccC
Confidence 44899999999999988899999999999999999999954 55588887 69
Q ss_pred CEEECcCCcccccCC
Q 003888 642 ESLDLSYNKLNGKIP 656 (788)
Q Consensus 642 ~~L~Ls~N~l~~~~p 656 (788)
++|++++|++.+..+
T Consensus 548 ~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 548 AFFNLTNNSVACICE 562 (606)
T ss_dssp CEEECCSCCCCCSST
T ss_pred cEEEccCCCcccCCc
Confidence 999999999997665
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=7e-47 Score=430.77 Aligned_cols=496 Identities=21% Similarity=0.256 Sum_probs=297.8
Q ss_pred CCCEEEcCCCCCCcCCChhhcCCCCCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEE
Q 003888 75 HLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFD 154 (788)
Q Consensus 75 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~ 154 (788)
++++|++++|.+++..+.+|.++++|++|++++|+++ .++...++++++|++|++++|.+++. +...++++++|++|+
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLV 106 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEE
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCcc-CHhhhcCcccccccc
Confidence 4555555555555555555555555555555555555 34433455555555555555555422 223455555555555
Q ss_pred ccCccccccccccccCCCCcccccEEEccCCCCCCCCcCccccCCCCCCEEEcCCCcCCC-CCchhHhhcCCCCCEEEcC
Q 003888 155 AANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDG-EFPNWLLENNTKLRQLYLV 233 (788)
Q Consensus 155 l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~L~ 233 (788)
+++|.+... .+..+..+++|++|++++|.+.+ .+|..+ .++++|++|+++
T Consensus 107 L~~n~l~~l----------------------------~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~l~ 157 (570)
T 2z63_A 107 AVETNLASL----------------------------ENFPIGHLKTLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDLS 157 (570)
T ss_dssp CTTSCCCCS----------------------------TTCSCTTCTTCCEEECCSSCCCCCCCCGGG-GGCTTCCEEECT
T ss_pred ccccccccC----------------------------CCccccccccccEEecCCCccceecChhhh-cccCCCCEEeCc
Confidence 555543321 00123455566666666666554 345554 567777777777
Q ss_pred CCcccccCccCcCCCCCc----cEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCC-CCcccccCCCCCCEEEcccC
Q 003888 234 NDSLTGPFRLPIHSHRWL----RFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDS-SIPSSFGNMNFLQILDLSNN 308 (788)
Q Consensus 234 ~~~l~~~~~~~l~~~~~L----~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n 308 (788)
+|.+++..+..+..+++| +.+++++|.+++..+ ..+... +|++|++++|.... ..+..+.+++.++...+...
T Consensus 158 ~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~-~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~ 235 (570)
T 2z63_A 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP-GAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235 (570)
T ss_dssp TSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECT-TTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEE
T ss_pred CCccceecHHHccchhccchhhhhcccCCCCceecCH-HHhccC-cceeEecccccccccchhhhhcCccccceeeeccc
Confidence 777776655555555555 566666666653333 222222 56666666553221 22334444555554444322
Q ss_pred cCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCC--CCCEEeccCC-cCCCcCCccccCCCCCCEEEccCCcCCC
Q 003888 309 QLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLT--NLRSLQLEGN-HLEGEIPQSLSKCSSLEGLYLNNNSLSG 385 (788)
Q Consensus 309 ~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~--~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~L~~n~i~~ 385 (788)
.+.. ..+ +.......+..++ .++.++++++ .+.+..+..+..+++|++|++++|.+.
T Consensus 236 ~~~~---------~~~----------l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~- 295 (570)
T 2z63_A 236 EFRN---------EGN----------LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE- 295 (570)
T ss_dssp ECCC---------CSS----------CEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-
T ss_pred cccC---------chh----------hhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-
Confidence 2110 000 0001111111111 2445555555 444455566666666666666666665
Q ss_pred CCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccC-ccccc
Q 003888 386 KIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLK-RGTFF 464 (788)
Q Consensus 386 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~ 464 (788)
..|..+..+ +|++|++++|.+. .+|. ..+++|+.|++++|.+.+..+. ..+++|+.|++++|.+.+... ...+.
T Consensus 296 ~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~ 370 (570)
T 2z63_A 296 RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDF 370 (570)
T ss_dssp SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHH
T ss_pred hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCcccccccccc
Confidence 455555555 6666666666665 2332 3456666666666665544333 335556666666665543320 12366
Q ss_pred CCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccC-cccCCCCCCCEEEccCCcCCCCCCCCCcCcccccc
Q 003888 465 HCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVP-VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHES 543 (788)
Q Consensus 465 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~ 543 (788)
.+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|++.+..|..+..
T Consensus 371 ~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------ 443 (570)
T 2z63_A 371 GTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG------ 443 (570)
T ss_dssp TCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT------
T ss_pred ccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc------
Confidence 778888888888887754443 7778888888888888876554 46777888888888888877666665554
Q ss_pred cCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCccc-ccCcccccCcccCCeEeC
Q 003888 544 SNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLI-GHIPPQIGNLTRIQTLNL 622 (788)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L 622 (788)
+++|+.|++++|.++ +.+|..+..+++|++|++
T Consensus 444 ----------------------------------------------l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l 477 (570)
T 2z63_A 444 ----------------------------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477 (570)
T ss_dssp ----------------------------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred ----------------------------------------------CCcCcEEECcCCcCccccchhhhhcccCCCEEEC
Confidence 347888888888876 467778888888888888
Q ss_pred CCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCC
Q 003888 623 SHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPE 681 (788)
Q Consensus 623 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~ 681 (788)
++|++++..|..|..+++|++|++++|++++..|..+..+++|+.|++++|+++|.+|.
T Consensus 478 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 478 SQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 88888887788888888888888888888877777788888888888888888887774
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.1e-46 Score=424.39 Aligned_cols=491 Identities=19% Similarity=0.214 Sum_probs=316.9
Q ss_pred CCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhhcCCCCCCEEECCCCcCcCcCChhhhcCCCCCC
Q 003888 47 SLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIE 126 (788)
Q Consensus 47 ~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~ 126 (788)
++++|++++|.+ ..+++.+|.++++|++|+|++|++++..|.+|+++++|++|++++|.++ .++...|+++++|+
T Consensus 29 ~l~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 103 (570)
T 2z63_A 29 STKNLDLSFNPL----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQ 103 (570)
T ss_dssp SCCEEECCSCCC----CEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCC
T ss_pred cccEEEccCCcc----CccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCccccc
Confidence 455555555555 3333334555555555555555555444555555555555555555554 33333455555555
Q ss_pred EEECcCccccccCCccccccCCCCcEEEccCccccccccccccCCCCcccccEEEccCCCCCCCCcCccccCCCCCCEEE
Q 003888 127 ELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVR 206 (788)
Q Consensus 127 ~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 206 (788)
+|++++|.+++. +...++++++|++|++++|.+.+ ..+|..+..+++|++|+
T Consensus 104 ~L~L~~n~l~~l-~~~~~~~l~~L~~L~L~~n~l~~---------------------------~~lp~~~~~l~~L~~L~ 155 (570)
T 2z63_A 104 KLVAVETNLASL-ENFPIGHLKTLKELNVAHNLIQS---------------------------FKLPEYFSNLTNLEHLD 155 (570)
T ss_dssp EEECTTSCCCCS-TTCSCTTCTTCCEEECCSSCCCC---------------------------CCCCGGGGGCTTCCEEE
T ss_pred cccccccccccC-CCccccccccccEEecCCCccce---------------------------ecChhhhcccCCCCEEe
Confidence 555555555422 21235555555555555554321 11344555566666666
Q ss_pred cCCCcCCCCCchhHhhcCCCC----CEEEcCCCcccccCccCcCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcc
Q 003888 207 LSHVNMDGEFPNWLLENNTKL----RQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNIS 282 (788)
Q Consensus 207 l~~~~~~~~~~~~~~~~l~~L----~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~ 282 (788)
+++|.+.+..+..+ +.+++| +.|++++|.+++..+..+... +|+.|++++|.............+++++...+.
T Consensus 156 l~~n~l~~~~~~~~-~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~ 233 (570)
T 2z63_A 156 LSSNKIQSIYCTDL-RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233 (570)
T ss_dssp CTTSCCCEECGGGG-HHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEE
T ss_pred CcCCccceecHHHc-cchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeec
Confidence 66666555444332 344555 677777777776666666554 677777777644322222223335566655554
Q ss_pred cCcCC------CCCcccccCCCC--CCEEEcccC-cCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEe
Q 003888 283 MNALD------SSIPSSFGNMNF--LQILDLSNN-QLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQ 353 (788)
Q Consensus 283 ~n~~~------~~~~~~~~~l~~--L~~L~l~~n-~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 353 (788)
...+. ......+..+.+ ++.++++++ .+.+.++..+. .+++|++|++++|.++. .+..+..+ +|++|+
T Consensus 234 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~ 310 (570)
T 2z63_A 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN-CLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLE 310 (570)
T ss_dssp EEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTG-GGTTCSEEEEESCEECS-CCBCCSCC-CCSEEE
T ss_pred cccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhc-CcCcccEEEecCccchh-hhhhhccC-CccEEe
Confidence 32221 111122222222 445566655 44444444443 56777777777777765 34445555 777777
Q ss_pred ccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCc--cccccCCCCccEEEccCCcC
Q 003888 354 LEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPI--PVGFCQLYSLQILDISDNNI 431 (788)
Q Consensus 354 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~l~~n~~ 431 (788)
+++|.+. .+|. ..+++|++|++++|.+.+..+. ..+++|++|++++|.+.+.. +..+..+++|++|++++|.+
T Consensus 311 l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l 385 (570)
T 2z63_A 311 LVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385 (570)
T ss_dssp EESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSE
T ss_pred eccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcc
Confidence 7777776 4443 4567777777777776654443 56777777777777776543 55667777777777777765
Q ss_pred CCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCC-ccccCCCCCCEEEccCCcCccccCcc
Q 003888 432 SGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIP-NWVDGLSQLSHLILGHNNLEGEVPVQ 510 (788)
Q Consensus 432 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~ 510 (788)
.+ ++.. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..
T Consensus 386 ~~------------------------~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 440 (570)
T 2z63_A 386 IT------------------------MSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440 (570)
T ss_dssp EE------------------------EEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTT
T ss_pred cc------------------------cccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhh
Confidence 42 2223 6678888999999988876655 46788899999999999998888888
Q ss_pred cCCCCCCCEEEccCCcCC-CCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccc
Q 003888 511 LCELNQLQLLDLSNNNLH-GPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKV 589 (788)
Q Consensus 511 l~~l~~L~~L~Ls~n~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (788)
+.++++|+.|++++|++. +.+|..+..
T Consensus 441 ~~~l~~L~~L~l~~n~l~~~~~p~~~~~---------------------------------------------------- 468 (570)
T 2z63_A 441 FNGLSSLEVLKMAGNSFQENFLPDIFTE---------------------------------------------------- 468 (570)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTT----------------------------------------------------
T ss_pred hhcCCcCcEEECcCCcCccccchhhhhc----------------------------------------------------
Confidence 889999999999999886 345555544
Q ss_pred cccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCc
Q 003888 590 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPH 657 (788)
Q Consensus 590 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 657 (788)
+++|+.|++++|++++..|..|..+++|++|++++|++++..+..|..+++|++|++++|++++..|.
T Consensus 469 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 45899999999999988899999999999999999999999889999999999999999999987764
No 13
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.3e-45 Score=426.44 Aligned_cols=550 Identities=20% Similarity=0.199 Sum_probs=303.8
Q ss_pred CCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhhcCCCCCCEEECCCC
Q 003888 29 ARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSN 108 (788)
Q Consensus 29 ~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n 108 (788)
++.+++ .+|..+. +++++|||++|.+ ..+++.+|.++++|++|+|++|+|++..|.+|.++++|++|+|++|
T Consensus 39 ~~~~l~-~vP~~lp---~~~~~LdLs~N~i----~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 39 MELNFY-KIPDNLP---FSTKNLDLSFNPL----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp TTSCCS-SCCSSSC---TTCCEEECTTSCC----CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CCCCcC-ccCCCCC---cCCCEEEeeCCCC----CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence 555555 3454333 4788888888888 6677667888888888888888888777778888888888888888
Q ss_pred cCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEEccCccccccccccccCCCCcccccEEEccCCCCC
Q 003888 109 QLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGD 188 (788)
Q Consensus 109 ~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 188 (788)
+++ .+|...|+++++|++|++++|++++ ++...++++++|++|++++|.+..
T Consensus 111 ~l~-~l~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~~-------------------------- 162 (635)
T 4g8a_A 111 PIQ-SLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQS-------------------------- 162 (635)
T ss_dssp CCC-EECGGGGTTCTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCC--------------------------
T ss_pred cCC-CCCHHHhcCCCCCCEEECCCCcCCC-CChhhhhcCcccCeeccccCcccc--------------------------
Confidence 887 7777678888888888888888874 444567888888888888877642
Q ss_pred CCCcCccccCCCCCCEEEcCCCcCCCCCchhHhhcCC----CCCEEEcCCCcccccCccCcCCCCCccEEEcccCcCccc
Q 003888 189 GVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNT----KLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGH 264 (788)
Q Consensus 189 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~----~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~n~i~~~ 264 (788)
...|..+..+++|++|++++|.+.+..+..+ ..+. ....++++.|.++...+..+. ...++.+++.+|.....
T Consensus 163 -~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l-~~L~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~ 239 (635)
T 4g8a_A 163 -FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLN 239 (635)
T ss_dssp -CCCCGGGGGCTTCCEEECCSSCCCEECGGGG-HHHHTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHH
T ss_pred -CCCchhhccchhhhhhcccCccccccccccc-cchhhhhhhhhhhhcccCcccccCccccc-chhhhhhhhhccccccc
Confidence 1235666777888888888888877655543 2222 344677777777655444333 33466677777765544
Q ss_pred CChhhhhcCCCCcEEEcccCcCC------CCCcccccCCCCCCEEEcccCcCCCccc--hHHHhcCCCCCEEEccCccCC
Q 003888 265 IPVEIGDILPSLISFNISMNALD------SSIPSSFGNMNFLQILDLSNNQLTGEIP--EHLAVSCVNLEFLALSNNNLK 336 (788)
Q Consensus 265 ~~~~~~~~l~~L~~L~L~~n~~~------~~~~~~~~~l~~L~~L~l~~n~i~~~i~--~~~~~~l~~L~~L~L~~n~i~ 336 (788)
++...+..++.++...+..+... ......+..+..+....+..+....... ...+..+.+++.+++.++.+.
T Consensus 240 ~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 319 (635)
T 4g8a_A 240 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIE 319 (635)
T ss_dssp HHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEE
T ss_pred ccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccc
Confidence 44444444566666555433221 1122223333344444433332211100 001112334444444444333
Q ss_pred CcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCcccccc
Q 003888 337 GHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFC 416 (788)
Q Consensus 337 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 416 (788)
... .+.....++.|++.+|.+....+ ..++.|+.+++..|.. ... ....
T Consensus 320 ~~~--~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~------------------------~~~--~~~~ 368 (635)
T 4g8a_A 320 RVK--DFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKG------------------------GNA--FSEV 368 (635)
T ss_dssp ECG--GGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCS------------------------CCB--CCCC
T ss_pred ccc--ccccchhhhhhhcccccccCcCc---ccchhhhhcccccccC------------------------CCC--cccc
Confidence 321 12223344444444444332211 1223344444444433 211 1122
Q ss_pred CCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEE
Q 003888 417 QLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHL 496 (788)
Q Consensus 417 ~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 496 (788)
.+++|+.+++++|.+... +..+. .+..+.+|+.+++..+.... .+..+..+++|+.+
T Consensus 369 ~l~~L~~L~ls~n~l~~~---------------------~~~~~-~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l 425 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFK---------------------GCCSQ-SDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHL 425 (635)
T ss_dssp BCTTCCEEECCSSCCBEE---------------------EECCH-HHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEE
T ss_pred cccccccchhhccccccc---------------------ccccc-chhhhhhhhhhhcccccccc-ccccccccccccch
Confidence 334444444444433211 00111 12233444555555444432 22334444555555
Q ss_pred EccCCcCcccc-CcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhcccccee
Q 003888 497 ILGHNNLEGEV-PVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFE 575 (788)
Q Consensus 497 ~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (788)
++.+++..... +..+..+++++.+++++|.+.+..+..+..
T Consensus 426 ~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~-------------------------------------- 467 (635)
T 4g8a_A 426 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-------------------------------------- 467 (635)
T ss_dssp ECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT--------------------------------------
T ss_pred hhhhcccccccccccccccccccccccccccccccccccccc--------------------------------------
Confidence 55544443222 233445555555555555554444433332
Q ss_pred eeeccceeeecccccccccEEECCCCcc-cccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCccccc
Q 003888 576 FTTKNIAYIYQGKVLSLLSGLDLSCNKL-IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGK 654 (788)
Q Consensus 576 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 654 (788)
++.++.|++++|.+ .+..|..|..+++|++|+|++|+++++.|..|+++++|++|+|++|+|++.
T Consensus 468 --------------~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l 533 (635)
T 4g8a_A 468 --------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 533 (635)
T ss_dssp --------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBC
T ss_pred --------------chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCC
Confidence 22455555555543 223455555666666666666666666566666666666666666666655
Q ss_pred CCccccCCCCCCEEEccCCcCcccCCCccccc-CCCCccccCCCCCCCCCCC-------------------CCCCCCCCC
Q 003888 655 IPHQLVELKTLAVFSVAYNNLSGEIPEWTAQF-ATFNESSYEGNTFLCGLPL-------------------PICRSPATM 714 (788)
Q Consensus 655 ~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~-~~~~~~~~~gn~~~c~~~l-------------------~~c~~~~~~ 714 (788)
.|..|..+++|++|++++|++++..|+.+..+ .+++.+++.+|||.|+|++ ..|.+|...
T Consensus 534 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~~ 613 (635)
T 4g8a_A 534 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 613 (635)
T ss_dssp CCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTTT
T ss_pred ChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCceeCCchHH
Confidence 55556666666666666666666656555554 3555666666666666643 168999988
Q ss_pred CcccCCCCC
Q 003888 715 SEASIGNER 723 (788)
Q Consensus 715 ~~~~~~~~~ 723 (788)
+|+++..++
T Consensus 614 ~g~~l~~~~ 622 (635)
T 4g8a_A 614 QGMPVLSLN 622 (635)
T ss_dssp TTCBGGGCC
T ss_pred CCCEeeeec
Confidence 888766554
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=8.2e-46 Score=419.66 Aligned_cols=490 Identities=21% Similarity=0.198 Sum_probs=309.5
Q ss_pred EEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhhcCCCCCCEEECCCCcCcCcCChhhhcCCCCCCEEE
Q 003888 50 YLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 129 (788)
Q Consensus 50 ~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~ 129 (788)
+.|.+++.+ ..+|. .+. ++|++|++++|++++..|.+|.++++|++|++++|.++ .++...++++++|++|+
T Consensus 9 ~c~~~~~~l----~~ip~-~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 9 VCDGRSRSF----TSIPS-GLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp EEECTTSCC----SSCCS-CCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEE
T ss_pred eEECCCCcc----ccccc-cCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEE
Confidence 345555555 34443 222 45566666666555555555555666666666666555 33322555556666666
Q ss_pred CcCccccccCCccccccCCCCcEEEccCccccccccccccCCCCcccccEEEccCCCCCCCCcCccccCCCCCCEEEcCC
Q 003888 130 LSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSH 209 (788)
Q Consensus 130 Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 209 (788)
+++|.+.+. +...++++++|++|++++|.+.+. ..|..+..+++|++|++++
T Consensus 81 Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~---------------------------~~~~~~~~l~~L~~L~L~~ 132 (549)
T 2z81_A 81 LSDNHLSSL-SSSWFGPLSSLKYLNLMGNPYQTL---------------------------GVTSLFPNLTNLQTLRIGN 132 (549)
T ss_dssp CTTSCCCSC-CHHHHTTCTTCCEEECTTCCCSSS---------------------------CSSCSCTTCTTCCEEEEEE
T ss_pred CCCCccCcc-CHHHhccCCCCcEEECCCCccccc---------------------------chhhhhhccCCccEEECCC
Confidence 666655532 223455555566665555544310 1233445566677777776
Q ss_pred CcCCCCCchhHhhcCCCCCEEEcCCCcccccCccCcCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCC
Q 003888 210 VNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSS 289 (788)
Q Consensus 210 ~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~ 289 (788)
|...+.+|...+.++++|++|++++|.+++..+..+..+++|+.|+++.|.+. .+|..+...+++|++|++++|.+++.
T Consensus 133 n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 133 VETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp SSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred CccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccc
Confidence 66545555444467888888888888888888888888999999999999886 67777666688999999999998864
Q ss_pred C--c-ccccCCCCCCEEEcccCcCCCccchHHH---hcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcC
Q 003888 290 I--P-SSFGNMNFLQILDLSNNQLTGEIPEHLA---VSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEI 363 (788)
Q Consensus 290 ~--~-~~~~~l~~L~~L~l~~n~i~~~i~~~~~---~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 363 (788)
. + .....+++|+.|++++|.+++..+..+. ..+++|+.+++++|.+.+..... . ..
T Consensus 212 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~-----~-------------~~ 273 (549)
T 2z81_A 212 QFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFN-----P-------------SE 273 (549)
T ss_dssp CCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCC-----C-------------CT
T ss_pred cccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccccc-----c-------------cc
Confidence 2 1 2235578899999999988755554442 24567777777777655421100 0 00
Q ss_pred CccccCCCCCCEEEccCCcCCCCC-----cccccCCCCCCEEeCCCCcccCCccccc-cCCCCccEEEccCCcCCCCCCC
Q 003888 364 PQSLSKCSSLEGLYLNNNSLSGKI-----PRWLGNLTGLKHIIMPENHLEGPIPVGF-CQLYSLQILDISDNNISGSLPS 437 (788)
Q Consensus 364 ~~~l~~l~~L~~L~L~~n~i~~~~-----~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~ 437 (788)
...+..+++++.|++.++.+.... +..+...++|++|++++|.+. .+|..+ ..+++|++|++++|.+.+
T Consensus 274 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~---- 348 (549)
T 2z81_A 274 SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVE---- 348 (549)
T ss_dssp TTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCH----
T ss_pred hhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCcccc----
Confidence 112344555666666655543210 111122345555555555554 233332 345555555555555542
Q ss_pred CCCCCCccEEEccCcccccccC--cccccCCCCCcEEEccCCcCCCCCC--ccccCCCCCCEEEccCCcCccccCcccCC
Q 003888 438 CFHPLSIEQVHLSKNMLHGQLK--RGTFFHCSSLVTLDLSYNRLNGSIP--NWVDGLSQLSHLILGHNNLEGEVPVQLCE 513 (788)
Q Consensus 438 ~~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 513 (788)
.++ ...+..+++|++|++++|++++..+ ..+..+++|++|++++|+++ .+|..+..
T Consensus 349 -------------------~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 408 (549)
T 2z81_A 349 -------------------EYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW 408 (549)
T ss_dssp -------------------HHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCC
T ss_pred -------------------ccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcc
Confidence 221 1124566777777777777765432 34677788888888888877 55667777
Q ss_pred CCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccc
Q 003888 514 LNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLL 593 (788)
Q Consensus 514 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 593 (788)
+++|++|++++|++.+.. ..+ +++|
T Consensus 409 ~~~L~~L~Ls~N~l~~l~-~~~------------------------------------------------------~~~L 433 (549)
T 2z81_A 409 PEKMRFLNLSSTGIRVVK-TCI------------------------------------------------------PQTL 433 (549)
T ss_dssp CTTCCEEECTTSCCSCCC-TTS------------------------------------------------------CTTC
T ss_pred cccccEEECCCCCccccc-chh------------------------------------------------------cCCc
Confidence 888888888888775321 111 2368
Q ss_pred cEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCC
Q 003888 594 SGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYN 673 (788)
Q Consensus 594 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N 673 (788)
+.|++++|++++.. ..+++|++|+|++|+++.+ |. ...+++|++|++++|++++.+|..+..+++|+.|++++|
T Consensus 434 ~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~i-p~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 507 (549)
T 2z81_A 434 EVLDVSNNNLDSFS----LFLPRLQELYISRNKLKTL-PD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507 (549)
T ss_dssp SEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSC-CC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSS
T ss_pred eEEECCCCChhhhc----ccCChhcEEECCCCccCcC-CC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCC
Confidence 88888888887642 5678888999999988854 43 456888999999999998888888888899999999999
Q ss_pred cCcccCC
Q 003888 674 NLSGEIP 680 (788)
Q Consensus 674 ~l~~~~p 680 (788)
+++|.+|
T Consensus 508 ~~~~~~~ 514 (549)
T 2z81_A 508 PWDCSCP 514 (549)
T ss_dssp CBCCCHH
T ss_pred CccCCCc
Confidence 9888776
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1e-45 Score=418.84 Aligned_cols=488 Identities=19% Similarity=0.218 Sum_probs=353.2
Q ss_pred CEEEcCCCCCCcCCChhhcCCCCCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEEcc
Q 003888 77 QELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAA 156 (788)
Q Consensus 77 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~ 156 (788)
.+.+.+++.++ .+|..+. ++|++|++++|.++ .++...++++++|++|++++|.+.+..+ ..+++
T Consensus 8 ~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~---------- 72 (549)
T 2z81_A 8 GVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEG-DAFYS---------- 72 (549)
T ss_dssp SEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECT-TTTTT----------
T ss_pred ceEECCCCccc-cccccCC--CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccCh-hhccc----------
Confidence 34566667666 4454443 67777777777776 3433367777777777777776653222 23444
Q ss_pred CccccccccccccCCCCcccccEEEccCCCCCCCCcCccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCc
Q 003888 157 NNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDS 236 (788)
Q Consensus 157 ~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 236 (788)
+++|++|++++|.+.+..+.. ++++++|++|++++|.
T Consensus 73 ------------------------------------------l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~ 109 (549)
T 2z81_A 73 ------------------------------------------LGSLEHLDLSDNHLSSLSSSW-FGPLSSLKYLNLMGNP 109 (549)
T ss_dssp ------------------------------------------CTTCCEEECTTSCCCSCCHHH-HTTCTTCCEEECTTCC
T ss_pred ------------------------------------------cccCCEEECCCCccCccCHHH-hccCCCCcEEECCCCc
Confidence 445555555555555433333 3677788888888887
Q ss_pred cccc-CccCcCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccc
Q 003888 237 LTGP-FRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIP 315 (788)
Q Consensus 237 l~~~-~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~ 315 (788)
+++. .+..+..+++|++|++++|.+.+.+|...+..+++|++|++++|.+++..|..++++++|++|++++|.+. .+|
T Consensus 110 l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~ 188 (549)
T 2z81_A 110 YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLL 188 (549)
T ss_dssp CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THH
T ss_pred ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccc
Confidence 7763 45678888899999999998555777655556899999999999999888999999999999999999987 888
Q ss_pred hHHHhcCCCCCEEEccCccCCCcCc---ccCcCCCCCCEEeccCCcCCCcCC----ccccCCCCCCEEEccCCcCCCCCc
Q 003888 316 EHLAVSCVNLEFLALSNNNLKGHMF---SRNFNLTNLRSLQLEGNHLEGEIP----QSLSKCSSLEGLYLNNNSLSGKIP 388 (788)
Q Consensus 316 ~~~~~~l~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~L~~n~i~~~~~ 388 (788)
..++..+++|++|++++|++++... .....+++|+.|++++|.+++..+ ..+..+++|+.+++++|.+.+...
T Consensus 189 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~ 268 (549)
T 2z81_A 189 EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD 268 (549)
T ss_dssp HHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSC
T ss_pred hhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccc
Confidence 8887779999999999999987532 223356788888888887765333 334567788888888887653211
Q ss_pred ccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCC-----CCCC-CCCCccEEEccCcccccccCccc
Q 003888 389 RWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSL-----PSCF-HPLSIEQVHLSKNMLHGQLKRGT 462 (788)
Q Consensus 389 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-----~~~~-~~~~L~~L~l~~n~~~~~~~~~~ 462 (788)
+ +. .....+..+++++.|++.++.+.... +..+ ...+++.+++++|.+ ..+|...
T Consensus 269 --~---~~-------------~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l-~~ip~~~ 329 (549)
T 2z81_A 269 --F---NP-------------SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV-FLVPCSF 329 (549)
T ss_dssp --C---CC-------------CTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC-CCCCHHH
T ss_pred --c---cc-------------cchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcc-ccCCHHH
Confidence 0 00 00011233344444444444433210 0000 024566666666665 3566664
Q ss_pred ccCCCCCcEEEccCCcCCCCCC---ccccCCCCCCEEEccCCcCccccC--cccCCCCCCCEEEccCCcCCCCCCCCCcC
Q 003888 463 FFHCSSLVTLDLSYNRLNGSIP---NWVDGLSQLSHLILGHNNLEGEVP--VQLCELNQLQLLDLSNNNLHGPIPPCFDN 537 (788)
Q Consensus 463 ~~~~~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~ 537 (788)
+..+++|++|++++|++++..| ..+..+++|++|++++|++++..+ ..+..+++|++|++++|++++ +|..+..
T Consensus 330 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~ 408 (549)
T 2z81_A 330 SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQW 408 (549)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCC
T ss_pred HhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhhcc
Confidence 5789999999999999987654 346789999999999999986543 458899999999999999983 4444433
Q ss_pred cccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccC
Q 003888 538 TTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRI 617 (788)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 617 (788)
+++|++|++++|++++ +|..+ .++|
T Consensus 409 ----------------------------------------------------~~~L~~L~Ls~N~l~~-l~~~~--~~~L 433 (549)
T 2z81_A 409 ----------------------------------------------------PEKMRFLNLSSTGIRV-VKTCI--PQTL 433 (549)
T ss_dssp ----------------------------------------------------CTTCCEEECTTSCCSC-CCTTS--CTTC
T ss_pred ----------------------------------------------------cccccEEECCCCCccc-ccchh--cCCc
Confidence 4589999999999984 44443 2689
Q ss_pred CeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCCcccccCCCCccccCCC
Q 003888 618 QTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGN 697 (788)
Q Consensus 618 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~gn 697 (788)
++|++++|++++.+ ..+++|++|++++|+++ .+|. ...+++|++|++++|++++.+|+++..+..+..+++.+|
T Consensus 434 ~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 507 (549)
T 2z81_A 434 EVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507 (549)
T ss_dssp SEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSS
T ss_pred eEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCC
Confidence 99999999999753 57899999999999998 6776 468999999999999999999998999999999999999
Q ss_pred CCCCCCC
Q 003888 698 TFLCGLP 704 (788)
Q Consensus 698 ~~~c~~~ 704 (788)
|+.|+|+
T Consensus 508 ~~~~~~~ 514 (549)
T 2z81_A 508 PWDCSCP 514 (549)
T ss_dssp CBCCCHH
T ss_pred CccCCCc
Confidence 9999997
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.7e-46 Score=426.56 Aligned_cols=394 Identities=20% Similarity=0.257 Sum_probs=287.2
Q ss_pred CCcccccCccCcCCCCCccEEEcccCcCccc-----------------CChhhh-hcCCCCcEEEcccCcCCCCCccccc
Q 003888 234 NDSLTGPFRLPIHSHRWLRFLDVSNNNFQGH-----------------IPVEIG-DILPSLISFNISMNALDSSIPSSFG 295 (788)
Q Consensus 234 ~~~l~~~~~~~l~~~~~L~~L~L~~n~i~~~-----------------~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~~ 295 (788)
+|.+++ +|..++++++|++|++++|.+++. +|..+. ..+++|++|++++|.+.+.+|..++
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 467777 777888888888888888888864 787776 1378899999999998888888899
Q ss_pred CCCCCCEEEcccCc-CCC-ccchHHHh-----cCCCCCEEEccCccCCCcCcc--cCcCCCCCCEEeccCCcCCCcCCcc
Q 003888 296 NMNFLQILDLSNNQ-LTG-EIPEHLAV-----SCVNLEFLALSNNNLKGHMFS--RNFNLTNLRSLQLEGNHLEGEIPQS 366 (788)
Q Consensus 296 ~l~~L~~L~l~~n~-i~~-~i~~~~~~-----~l~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~ 366 (788)
++++|++|++++|+ +++ .+|..+.. .+++|++|++++|+++. .+. .+.++++|++|++++|.+++.+| .
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~-ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~ 348 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT-FPVETSLQKMKKLGMLECLYNQLEGKLP-A 348 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS-CCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc-cCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence 99999999999998 887 78887763 13788888888888884 445 67788888888888888887777 7
Q ss_pred ccCCCCCCEEEccCCcCCCCCcccccCCCC-CCEEeCCCCcccCCccccccCCC--CccEEEccCCcCCCCCCCCCCCCC
Q 003888 367 LSKCSSLEGLYLNNNSLSGKIPRWLGNLTG-LKHIIMPENHLEGPIPVGFCQLY--SLQILDISDNNISGSLPSCFHPLS 443 (788)
Q Consensus 367 l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~~~~~~~ 443 (788)
+..+++|++|++++|.++ .+|..+..+++ |++|++++|.+. .+|..+..++ +|++|++++|.+.+..|..+...
T Consensus 349 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~- 425 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL- 425 (636)
T ss_dssp CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT-
T ss_pred hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccc-
Confidence 778888888888888877 66777777777 888888888877 5666665544 77888888887776555433200
Q ss_pred ccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCC-------CC
Q 003888 444 IEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCEL-------NQ 516 (788)
Q Consensus 444 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-------~~ 516 (788)
... ...+++|++|++++|+++...+..+..+++|++|++++|+++...+..+... ++
T Consensus 426 ---------------~~~-~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~ 489 (636)
T 4eco_A 426 ---------------DPT-PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489 (636)
T ss_dssp ---------------CSS-CCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGG
T ss_pred ---------------ccc-cccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCC
Confidence 000 1145677888888888775444455667888888888888874333333333 27
Q ss_pred CCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEE
Q 003888 517 LQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGL 596 (788)
Q Consensus 517 L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 596 (788)
|+.|++++|+++ .+|..+.. ..+++|+.|
T Consensus 490 L~~L~Ls~N~l~-~lp~~~~~--------------------------------------------------~~l~~L~~L 518 (636)
T 4eco_A 490 LTSIDLRFNKLT-KLSDDFRA--------------------------------------------------TTLPYLVGI 518 (636)
T ss_dssp CCEEECCSSCCC-BCCGGGST--------------------------------------------------TTCTTCCEE
T ss_pred ccEEECcCCcCC-ccChhhhh--------------------------------------------------ccCCCcCEE
Confidence 888888888877 34433320 014578888
Q ss_pred ECCCCcccccCcccccCcccCCeEeC------CCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEc
Q 003888 597 DLSCNKLIGHIPPQIGNLTRIQTLNL------SHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSV 670 (788)
Q Consensus 597 ~Ls~n~l~~~~~~~l~~l~~L~~L~L------s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 670 (788)
+|++|++++ +|..+..+++|++|+| ++|++.+.+|..+..+++|++|++++|++ +.+|..+. ++|+.|++
T Consensus 519 ~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~L 594 (636)
T 4eco_A 519 DLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDI 594 (636)
T ss_dssp ECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEEC
T ss_pred ECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEEC
Confidence 888888886 7888888888888888 56778888899999999999999999999 47777655 79999999
Q ss_pred cCCcCcccCCCccccc--CCCCccccCCCCCCCCCC
Q 003888 671 AYNNLSGEIPEWTAQF--ATFNESSYEGNTFLCGLP 704 (788)
Q Consensus 671 ~~N~l~~~~p~~~~~~--~~~~~~~~~gn~~~c~~~ 704 (788)
++|++.+..+..+... .....+.+.....+|+|+
T Consensus 595 s~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~ 630 (636)
T 4eco_A 595 KDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCD 630 (636)
T ss_dssp CSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCG
T ss_pred cCCCCccccHHhcchhhhcccceeecCCccccCCCc
Confidence 9998886554433221 223344455556666665
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.2e-45 Score=422.45 Aligned_cols=463 Identities=17% Similarity=0.211 Sum_probs=237.4
Q ss_pred CCCCEEEcCCCCCCcCCChhhcCCCCCCEEECCCCcC------cC------cCChhhhcCCCCCCEEECcCccccccCCc
Q 003888 74 MHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQL------TG------SISSSPLVHLTSIEELMLSNNHFQIPISL 141 (788)
Q Consensus 74 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~------~~------~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 141 (788)
.+++.|+|+++.+.+.+|.+++++++|++|+|++|.+ .| .+|... +.+|+ +++++|.+.+.++.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~~ 156 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPRE 156 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCchh
Confidence 3566777777777777777777777777777777754 12 344311 33444 55665555543332
Q ss_pred cccccCCCCcEEEccCccccccccccccCCCCcccccEEEccC-CCCCCCCcCccccCCCCCCEEEcCCCcCCCC-----
Q 003888 142 EPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSS-GYGDGVTFPKFLYHQHDLEDVRLSHVNMDGE----- 215 (788)
Q Consensus 142 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----- 215 (788)
..-..+..+..+++....+.. .....++.+.+.. ++.+.+ +|..++++++|++|++++|.+.+.
T Consensus 157 ~~~~~~~~l~~~~l~~~~~~~---------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 226 (636)
T 4eco_A 157 DFSDLIKDCINSDPQQKSIKK---------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEA 226 (636)
T ss_dssp GSCHHHHHHHHHCTTSCCCCC---------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSS
T ss_pred hHHHHHHHHhhcCcccccccc---------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccc
Confidence 111111111111111111100 0000111111111 223333 566666666666666666666553
Q ss_pred ------------CchhHhh--cCCCCCEEEcCCCcccccCccCcCCCCCccEEEcccCc-Ccc-cCChhhhhc-----CC
Q 003888 216 ------------FPNWLLE--NNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNN-FQG-HIPVEIGDI-----LP 274 (788)
Q Consensus 216 ------------~~~~~~~--~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~n~-i~~-~~~~~~~~~-----l~ 274 (788)
+|..+ . ++++|++|++++|.+.+.+|..+..+++|++|++++|+ +++ .+|..++.. ++
T Consensus 227 ~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~ 305 (636)
T 4eco_A 227 WENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE 305 (636)
T ss_dssp CSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGG
T ss_pred ccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCC
Confidence 44443 2 45555555555555555555555555555555555555 554 455444431 24
Q ss_pred CCcEEEcccCcCCCCCcc--cccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCC-CCE
Q 003888 275 SLISFNISMNALDSSIPS--SFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTN-LRS 351 (788)
Q Consensus 275 ~L~~L~L~~n~~~~~~~~--~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~-L~~ 351 (788)
+|++|++++|.++ .+|. .++++++|++|++++|.++|.+| . +..+++|++|++++|+++ ..+..+..+++ |++
T Consensus 306 ~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~ 381 (636)
T 4eco_A 306 KIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVEN 381 (636)
T ss_dssp TCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCE
T ss_pred CCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEECCCCccc-cccHhhhhhcccCcE
Confidence 5555555555554 3444 45555555555555555544444 2 223444455555544444 22333444444 444
Q ss_pred EeccCCcCCCcCCccccCCC--CCCEEEccCCcCCCCCccccc-------CCCCCCEEeCCCCcccCCccccccCCCCcc
Q 003888 352 LQLEGNHLEGEIPQSLSKCS--SLEGLYLNNNSLSGKIPRWLG-------NLTGLKHIIMPENHLEGPIPVGFCQLYSLQ 422 (788)
Q Consensus 352 L~l~~n~l~~~~~~~l~~l~--~L~~L~L~~n~i~~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 422 (788)
|++++|.++ .+|..+..++ +|++|++++|.+.+..|..+. .+++|++|++++|.+....+..+..+++|+
T Consensus 382 L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~ 460 (636)
T 4eco_A 382 LSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460 (636)
T ss_dssp EECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCS
T ss_pred EEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCC
Confidence 444444444 3344333322 444444444444444444443 333444444444444422222233344444
Q ss_pred EEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCccccc-------CCCCCcEEEccCCcCCCCCCcccc--CCCCC
Q 003888 423 ILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFF-------HCSSLVTLDLSYNRLNGSIPNWVD--GLSQL 493 (788)
Q Consensus 423 ~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-------~~~~L~~L~L~~n~l~~~~~~~~~--~l~~L 493 (788)
+|++++|.++ .+|...+. ++++|+.|++++|+++ .+|..+. .+++|
T Consensus 461 ~L~Ls~N~l~------------------------~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L 515 (636)
T 4eco_A 461 SINLMGNMLT------------------------EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYL 515 (636)
T ss_dssp EEECCSSCCS------------------------BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTC
T ss_pred EEECCCCCCC------------------------CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCc
Confidence 4444444433 22222122 2236666666666665 3444444 56666
Q ss_pred CEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccc
Q 003888 494 SHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHEN 573 (788)
Q Consensus 494 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (788)
++|++++|++++ +|..+..+++|+.|++++|+
T Consensus 516 ~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~----------------------------------------------- 547 (636)
T 4eco_A 516 VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR----------------------------------------------- 547 (636)
T ss_dssp CEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB-----------------------------------------------
T ss_pred CEEECCCCCCCC-cChhhhcCCCCCEEECCCCc-----------------------------------------------
Confidence 666666666664 55555566666666665553
Q ss_pred eeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccc
Q 003888 574 FEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG 653 (788)
Q Consensus 574 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 653 (788)
++++|++.+.+|..+..+++|++|+|++|+++ .+|..+. ++|++|++++|++..
T Consensus 548 -----------------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 548 -----------------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp -----------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCE
T ss_pred -----------------------ccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCcc
Confidence 23567788889999999999999999999995 4566655 799999999998875
Q ss_pred cC
Q 003888 654 KI 655 (788)
Q Consensus 654 ~~ 655 (788)
..
T Consensus 602 ~~ 603 (636)
T 4eco_A 602 ID 603 (636)
T ss_dssp EE
T ss_pred cc
Confidence 44
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.1e-42 Score=399.60 Aligned_cols=531 Identities=22% Similarity=0.223 Sum_probs=333.4
Q ss_pred eecCCCCCCCCCccEEEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCc
Q 003888 9 LVRGQGFPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRG 88 (788)
Q Consensus 9 ~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 88 (788)
+||. .+. +++++||| ++|++++..+.+|. ++++|++|||++|.+ ..+++.+|.++++|++|+|++|++++
T Consensus 45 ~vP~-~lp--~~~~~LdL--s~N~i~~l~~~~f~-~l~~L~~L~Ls~N~i----~~i~~~~f~~L~~L~~L~Ls~N~l~~ 114 (635)
T 4g8a_A 45 KIPD-NLP--FSTKNLDL--SFNPLRHLGSYSFF-SFPELQVLDLSRCEI----QTIEDGAYQSLSHLSTLILTGNPIQS 114 (635)
T ss_dssp SCCS-SSC--TTCCEEEC--TTSCCCEECTTTTT-TCTTCCEEECTTCCC----CEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred ccCC-CCC--cCCCEEEe--eCCCCCCCCHHHHh-CCCCCCEEECCCCcC----CCcChhHhcCCCCCCEEEccCCcCCC
Confidence 5674 333 38999999 99999988778899 999999999999999 67887789999999999999999997
Q ss_pred CCChhhcCCCCCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEEccCccccccccccc
Q 003888 89 SLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESH 168 (788)
Q Consensus 89 ~~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 168 (788)
..+.+|.++++|++|+|++|+++ .++...|+++++|++|++++|.++.......++++++|++|++++|.+.+.....+
T Consensus 115 l~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l 193 (635)
T 4g8a_A 115 LALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 193 (635)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred CCHHHhcCCCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccc
Confidence 77788999999999999999998 78776899999999999999999754444578899999999999999886544332
Q ss_pred cCCCCcc-cccEEEccCCCCCCCCcCccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCcccccCccCcCC
Q 003888 169 SLTAPNF-QLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHS 247 (788)
Q Consensus 169 ~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~ 247 (788)
....... ....+++ ..+.+.. ++........++.+++.++.....++...+..++.++...+..+.....
T Consensus 194 ~~L~~l~~~~~~~~l-s~n~l~~-i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~------- 264 (635)
T 4g8a_A 194 RVLHQMPLLNLSLDL-SLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE------- 264 (635)
T ss_dssp HHHHTCTTCCCEEEC-TTCCCCE-ECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTS-------
T ss_pred cchhhhhhhhhhhhc-ccCcccc-cCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccc-------
Confidence 2111111 2233444 3322222 2222223334455555555444434444444555555444432211110
Q ss_pred CCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCC---CCcccccCCCCCCEEEcccCcCCCccchHHHhcCCC
Q 003888 248 HRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDS---SIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVN 324 (788)
Q Consensus 248 ~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~---~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~ 324 (788)
..+. ............+....+..+.... .....+..+.+++.+++.++.+. .++... ...+
T Consensus 265 -----------~~l~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~--~~~~ 329 (635)
T 4g8a_A 265 -----------GNLE-KFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIE-RVKDFS--YNFG 329 (635)
T ss_dssp -----------CCCS-CCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEE-ECGGGG--SCCC
T ss_pred -----------cccc-cccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccc-cccccc--cchh
Confidence 0011 0111111113344444444333221 22334566778888888888776 444432 4678
Q ss_pred CCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCC--CcccccCCCCCCEEeC
Q 003888 325 LEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGK--IPRWLGNLTGLKHIIM 402 (788)
Q Consensus 325 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~l 402 (788)
++.|++.+|.+...... .++.|+.+++.+|..... .....+++|+.+++++|.+... .+..+..+.+|+.+++
T Consensus 330 L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~ 404 (635)
T 4g8a_A 330 WQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDL 404 (635)
T ss_dssp CSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEEC
T ss_pred hhhhhcccccccCcCcc---cchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhc
Confidence 89999998888765443 457888999998887633 2345678888888888877522 2333444555666666
Q ss_pred CCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCC
Q 003888 403 PENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGS 482 (788)
Q Consensus 403 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 482 (788)
..+.... .+..+..+++|+.++++.++... ..+...|..+++++.++++.|.+.+.
T Consensus 405 ~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~-----------------------~~~~~~~~~l~~l~~l~ls~n~l~~~ 460 (635)
T 4g8a_A 405 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQ-----------------------MSEFSVFLSLRNLIYLDISHTHTRVA 460 (635)
T ss_dssp CSCSEEE-ECSCCTTCTTCCEEECTTSEEES-----------------------TTSSCTTTTCTTCCEEECTTSCCEEC
T ss_pred ccccccc-ccccccccccccchhhhhccccc-----------------------cccccccccccccccccccccccccc
Confidence 6555442 23334445555555555444331 22222244555555555555555555
Q ss_pred CCccccCCCCCCEEEccCCcCc-cccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCccccccccc
Q 003888 483 IPNWVDGLSQLSHLILGHNNLE-GEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDS 561 (788)
Q Consensus 483 ~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (788)
.+..+..+++|+.|++++|.+. +..|..|..++
T Consensus 461 ~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~---------------------------------------------- 494 (635)
T 4g8a_A 461 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR---------------------------------------------- 494 (635)
T ss_dssp CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT----------------------------------------------
T ss_pred cccccccchhhhhhhhhhcccccccCchhhhhcc----------------------------------------------
Confidence 5555555555555555555432 23344444444
Q ss_pred ccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCC
Q 003888 562 MMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHI 641 (788)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 641 (788)
+|+.|+|++|++++..|..|.++++|++|+|++|+|+++.+..|+++++|
T Consensus 495 ------------------------------~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 544 (635)
T 4g8a_A 495 ------------------------------NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 544 (635)
T ss_dssp ------------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTC
T ss_pred ------------------------------ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCC
Confidence 45555555555555566666666777777777777776666667777777
Q ss_pred CEEECcCCcccccCCccccCC-CCCCEEEccCCcCcccC
Q 003888 642 ESLDLSYNKLNGKIPHQLVEL-KTLAVFSVAYNNLSGEI 679 (788)
Q Consensus 642 ~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~l~~N~l~~~~ 679 (788)
++|+|++|++++..|..+..+ ++|++|++++|++.|.+
T Consensus 545 ~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 545 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp CEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred CEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 777777777776666666665 46777777777776643
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.8e-43 Score=409.72 Aligned_cols=354 Identities=21% Similarity=0.251 Sum_probs=223.8
Q ss_pred Cccccc--CCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCcc-CCC-cCcccC-------cCCCCCCEEeccCCc
Q 003888 290 IPSSFG--NMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNN-LKG-HMFSRN-------FNLTNLRSLQLEGNH 358 (788)
Q Consensus 290 ~~~~~~--~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~-i~~-~~~~~~-------~~l~~L~~L~l~~n~ 358 (788)
+|..++ ++++|++|++++|.+.+.+|..+. ++++|++|++++|+ +++ ..|..+ ..+++|++|++++|.
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~-~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG-GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHh-CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 444444 555555555555555445554433 45555555555554 444 233222 233355555555555
Q ss_pred CCCcCCc--cccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCC-ccEEEccCCcCCCCC
Q 003888 359 LEGEIPQ--SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYS-LQILDISDNNISGSL 435 (788)
Q Consensus 359 l~~~~~~--~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~ 435 (788)
++ .+|. .+.++++|+.|++++|.++ .+| .|..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.++ ..
T Consensus 560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~l 634 (876)
T 4ecn_A 560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YI 634 (876)
T ss_dssp CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SC
T ss_pred CC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cC
Confidence 55 4454 5555555555555555555 444 5555555555555555555 44555555555 555555555555 33
Q ss_pred CCCCCC---CCccEEEccCcccccccCccc--cc--CCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccC
Q 003888 436 PSCFHP---LSIEQVHLSKNMLHGQLKRGT--FF--HCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVP 508 (788)
Q Consensus 436 ~~~~~~---~~L~~L~l~~n~~~~~~~~~~--~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 508 (788)
|..+.. .+|+.|++++|.+.+.+|... +. .+++|+.|++++|.++...+..+..+++|+.|++++|+++...+
T Consensus 635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~ 714 (876)
T 4ecn_A 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPE 714 (876)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCT
T ss_pred chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccCh
Confidence 333321 225556666665554433210 11 34578888888888884433344578888888888888884333
Q ss_pred cccCC-------CCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccc
Q 003888 509 VQLCE-------LNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNI 581 (788)
Q Consensus 509 ~~l~~-------l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (788)
..+.. +++|+.|++++|++. .+|..+..
T Consensus 715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~-------------------------------------------- 749 (876)
T 4ecn_A 715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA-------------------------------------------- 749 (876)
T ss_dssp TSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST--------------------------------------------
T ss_pred HHhccccccccccCCccEEECCCCCCc-cchHHhhh--------------------------------------------
Confidence 33332 238899999999887 34443320
Q ss_pred eeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCC------CcCCccCCccccCCCCCCEEECcCCcccccC
Q 003888 582 AYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSH------NNLTGLIPSTFSNLKHIESLDLSYNKLNGKI 655 (788)
Q Consensus 582 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~------N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 655 (788)
..+++|+.|+|++|++++ +|..+..+++|+.|+|++ |++.+.+|..|..+++|++|+|++|++ +.+
T Consensus 750 ------~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~I 821 (876)
T 4ecn_A 750 ------TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKV 821 (876)
T ss_dssp ------TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBC
T ss_pred ------ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-Ccc
Confidence 014588999999999986 688888999999999876 888889999999999999999999999 578
Q ss_pred CccccCCCCCCEEEccCCcCcccCCCcccccCCCCccccCCCCCCC--CCC
Q 003888 656 PHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC--GLP 704 (788)
Q Consensus 656 p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~gn~~~c--~~~ 704 (788)
|..+. ++|+.|++++|++....+..+..........+.+|+..+ +|+
T Consensus 822 p~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~ 870 (876)
T 4ecn_A 822 DEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCD 870 (876)
T ss_dssp CSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESCG
T ss_pred CHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccccCCCC
Confidence 87765 699999999999987777666655555566667776554 775
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.9e-43 Score=397.02 Aligned_cols=388 Identities=19% Similarity=0.164 Sum_probs=200.8
Q ss_pred EEEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhhcCCCCCCE
Q 003888 23 HLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRI 102 (788)
Q Consensus 23 ~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 102 (788)
+|++ ++++++. +|..+. ++|++|++++|.+ ..+++.+|.++++|++|+|++|++++..|.+|+++++|++
T Consensus 4 ~l~l--s~n~l~~-ip~~~~---~~L~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 73 (520)
T 2z7x_B 4 LVDR--SKNGLIH-VPKDLS---QKTTILNISQNYI----SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEY 73 (520)
T ss_dssp EEEC--TTSCCSS-CCCSCC---TTCSEEECCSSCC----CCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCE
T ss_pred eEec--CCCCccc-cccccc---ccccEEECCCCcc----cccChhhccccccccEEecCCCccCCcChHHhhcccCCCE
Confidence 4555 5555542 333222 4555555555555 3333334555555555555555555444555555555555
Q ss_pred EECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEEccCccccccccccccCCCCcccccEEEc
Q 003888 103 LDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSL 182 (788)
Q Consensus 103 L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l 182 (788)
|+|++|+++ .+|. . .+++|++|++++|.+++......++++++|++|++++|
T Consensus 74 L~Ls~N~l~-~lp~-~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n------------------------ 125 (520)
T 2z7x_B 74 LDLSHNKLV-KISC-H--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT------------------------ 125 (520)
T ss_dssp EECCSSCCC-EEEC-C--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES------------------------
T ss_pred EecCCCcee-ecCc-c--ccCCccEEeccCCccccccchhhhccCCcceEEEecCc------------------------
Confidence 555555554 4554 1 45555555555555543111123444444444444444
Q ss_pred cCCCCCCCCcCccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCC--CEEEcCCCcc--cccCccCcCCCC-CccEEEcc
Q 003888 183 SSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKL--RQLYLVNDSL--TGPFRLPIHSHR-WLRFLDVS 257 (788)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L--~~L~L~~~~l--~~~~~~~l~~~~-~L~~L~L~ 257 (788)
.+.+. .+..+++| ++|++++|.+ ++..+..+..+. +...++++
T Consensus 126 ----------------------------~l~~~----~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 173 (520)
T 2z7x_B 126 ----------------------------HLEKS----SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173 (520)
T ss_dssp ----------------------------SCCGG----GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECC
T ss_pred ----------------------------ccchh----hccccccceeeEEEeecccccccccccccccccccceEEEEec
Confidence 43321 11233444 5555555554 333344443333 22245566
Q ss_pred cCcCcccCChhhhhcCCCCcEEEcccCc-------CCCCCcccccCCCCCCEEEcccCcCCCccchHHHh--cCCCCCEE
Q 003888 258 NNNFQGHIPVEIGDILPSLISFNISMNA-------LDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAV--SCVNLEFL 328 (788)
Q Consensus 258 ~n~i~~~~~~~~~~~l~~L~~L~L~~n~-------~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~--~l~~L~~L 328 (788)
+|.+.+.++...+..+++|+.+++++|. +.+.++ .+..+++|+.|++++|.+.+..+..+.. ..++|++|
T Consensus 174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L 252 (520)
T 2z7x_B 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252 (520)
T ss_dssp SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred cCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence 6666555555555556666666666665 333333 4666677777777666655332222211 13455555
Q ss_pred EccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCc-ccccCC---CCCCEEeCCC
Q 003888 329 ALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIP-RWLGNL---TGLKHIIMPE 404 (788)
Q Consensus 329 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~-~~~~~l---~~L~~L~l~~ 404 (788)
++++|++++..+..+... ....+++|+.+++++|.+ ..| ..+..+ ++|+.|++++
T Consensus 253 ~l~~n~l~~~~p~~~~~~-------------------~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~ 311 (520)
T 2z7x_B 253 SISNVKLQGQLDFRDFDY-------------------SGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSG 311 (520)
T ss_dssp EEEEEEEESCCCCCCCCC-------------------CSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEES
T ss_pred EeecccccCccccchhhc-------------------ccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCC
Confidence 555555554444433000 004445555555555544 222 222222 3455555555
Q ss_pred CcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCC--C
Q 003888 405 NHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNG--S 482 (788)
Q Consensus 405 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~ 482 (788)
|.+.... .+..+++|++|++++|.+++..+. . +..+++|++|++++|++++ .
T Consensus 312 n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~-----------------------~-~~~l~~L~~L~L~~N~l~~l~~ 365 (520)
T 2z7x_B 312 TRMVHML--CPSKISPFLHLDFSNNLLTDTVFE-----------------------N-CGHLTELETLILQMNQLKELSK 365 (520)
T ss_dssp SCCCCCC--CCSSCCCCCEEECCSSCCCTTTTT-----------------------T-CCCCSSCCEEECCSSCCCBHHH
T ss_pred Ccccccc--chhhCCcccEEEeECCccChhhhh-----------------------h-hccCCCCCEEEccCCccCcccc
Confidence 5544221 114566667777777666542221 1 4556677777777777765 3
Q ss_pred CCccccCCCCCCEEEccCCcCccccC-cccCCCCCCCEEEccCCcCC
Q 003888 483 IPNWVDGLSQLSHLILGHNNLEGEVP-VQLCELNQLQLLDLSNNNLH 528 (788)
Q Consensus 483 ~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~i~ 528 (788)
.|..+..+++|++|++++|++++.+| ..+..+++|+.|++++|+++
T Consensus 366 ~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~ 412 (520)
T 2z7x_B 366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412 (520)
T ss_dssp HHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC
T ss_pred chHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCC
Confidence 45667788888888888888886344 34677777777777777765
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.5e-43 Score=392.74 Aligned_cols=452 Identities=17% Similarity=0.156 Sum_probs=351.8
Q ss_pred CCCcccceeecCCCCCCCCCccEEEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEE
Q 003888 1 MFDCKVNGLVRGQGFPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELY 80 (788)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~ 80 (788)
+++|+++ .+|. .+. ++|++|++ ++|.+++..+..+. ++++|++|++++|.+ ..+++.+|+++++|++|+
T Consensus 7 ls~n~l~-~ip~-~~~--~~L~~L~L--s~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~ 75 (520)
T 2z7x_B 7 RSKNGLI-HVPK-DLS--QKTTILNI--SQNYISELWTSDIL-SLSKLRILIISHNRI----QYLDISVFKFNQELEYLD 75 (520)
T ss_dssp CTTSCCS-SCCC-SCC--TTCSEEEC--CSSCCCCCCHHHHT-TCTTCCEEECCSSCC----CEEEGGGGTTCTTCCEEE
T ss_pred cCCCCcc-cccc-ccc--ccccEEEC--CCCcccccChhhcc-ccccccEEecCCCcc----CCcChHHhhcccCCCEEe
Confidence 3567777 5885 454 89999999 99999988888999 999999999999999 556556899999999999
Q ss_pred cCCCCCCcCCChhhcCCCCCCEEECCCCcCcC-cCChhhhcCCCCCCEEECcCccccccCCccccccCCCC--cEEEccC
Q 003888 81 IDNNDLRGSLPWCLANMTSLRILDVSSNQLTG-SISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRL--KIFDAAN 157 (788)
Q Consensus 81 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~-~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L--~~L~l~~ 157 (788)
|++|+++ .+|.. .+++|++|++++|.+++ .+|. .++++++|++|++++|.+.+ ..+..+++| ++|++++
T Consensus 76 Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~ 147 (520)
T 2z7x_B 76 LSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICK-EFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVL 147 (520)
T ss_dssp CCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCG-GGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEE
T ss_pred cCCCcee-ecCcc--ccCCccEEeccCCccccccchh-hhccCCcceEEEecCcccch----hhccccccceeeEEEeec
Confidence 9999999 56655 89999999999999985 4666 89999999999999999875 256777777 9999999
Q ss_pred ccccccccccccCCCCcccccEEEccCCCCCCCCcCccccCCC-CCCEEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCc
Q 003888 158 NEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQH-DLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDS 236 (788)
Q Consensus 158 n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 236 (788)
|.+.+ .+..|..+..+. ....+++++|.+.+.++...+..+++|+.|++++|.
T Consensus 148 n~l~~--------------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 201 (520)
T 2z7x_B 148 GETYG--------------------------EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVL 201 (520)
T ss_dssp CTTTT--------------------------SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECC
T ss_pred ccccc--------------------------cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccc
Confidence 87721 111223333322 233456777777777776666678888888888876
Q ss_pred -------ccccCccCcCCCCCccEEEcccCcCcccCChhhhh--cCCCCcEEEcccCcCCCCCcccc-----cCCCCCCE
Q 003888 237 -------LTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGD--ILPSLISFNISMNALDSSIPSSF-----GNMNFLQI 302 (788)
Q Consensus 237 -------l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~--~l~~L~~L~L~~n~~~~~~~~~~-----~~l~~L~~ 302 (788)
+.+.++ .+..+++|+.|++++|.+++..+..+.. ..++|++|++++|.+++.+|..+ .++++|+.
T Consensus 202 ~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~ 280 (520)
T 2z7x_B 202 EDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSI 280 (520)
T ss_dssp STTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEE
T ss_pred cccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEe
Confidence 555444 6778889999999998877544333321 14689999999999988888888 88999999
Q ss_pred EEcccCcCCCccc-hHHHh--cCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEcc
Q 003888 303 LDLSNNQLTGEIP-EHLAV--SCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLN 379 (788)
Q Consensus 303 L~l~~n~i~~~i~-~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 379 (788)
+++++|.+ .+| ..+.. ...+|+.|++++|.+..... ...+++|++|++++|++++..|..+..+++|++|+++
T Consensus 281 l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 356 (520)
T 2z7x_B 281 HQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ 356 (520)
T ss_dssp EEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECC
T ss_pred ccccccce--ecchhhhhcccccCceeEEEcCCCccccccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEcc
Confidence 99999988 566 33332 12679999999998876432 2577889999999999888788888888999999999
Q ss_pred CCcCCC--CCcccccCCCCCCEEeCCCCcccCCccc-cccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCccccc
Q 003888 380 NNSLSG--KIPRWLGNLTGLKHIIMPENHLEGPIPV-GFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHG 456 (788)
Q Consensus 380 ~n~i~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~ 456 (788)
+|.+++ ..|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+++.
T Consensus 357 ~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~---------------------- 414 (520)
T 2z7x_B 357 MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT---------------------- 414 (520)
T ss_dssp SSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGG----------------------
T ss_pred CCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcc----------------------
Confidence 998875 3456678888888888888888874444 467778888888888877532
Q ss_pred ccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCC
Q 003888 457 QLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHG 529 (788)
Q Consensus 457 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~ 529 (788)
++.. +. ++|+.|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|++..
T Consensus 415 -~~~~-l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 415 -IFRC-LP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp -GGGS-CC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred -hhhh-hc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence 2222 21 68999999999998 677777789999999999999995544458889999999999999874
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=8e-43 Score=404.29 Aligned_cols=383 Identities=20% Similarity=0.277 Sum_probs=238.0
Q ss_pred CcCCCCCchhHhhcCCCCCEEEcCCCcccc-----------------cCccCcC--CCCCccEEEcccCcCcccCChhhh
Q 003888 210 VNMDGEFPNWLLENNTKLRQLYLVNDSLTG-----------------PFRLPIH--SHRWLRFLDVSNNNFQGHIPVEIG 270 (788)
Q Consensus 210 ~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-----------------~~~~~l~--~~~~L~~L~L~~n~i~~~~~~~~~ 270 (788)
|.+.+ +|..+ .++++|+.|+|++|.+++ .+|..++ .+++|++|++++|.+.+.+|..+.
T Consensus 435 N~L~~-IP~~l-~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 435 NRITF-ISKAI-QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512 (876)
T ss_dssp CEEEE-ECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred Ccccc-hhHHH-hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence 34444 44443 455555555555555555 3566655 777777777777777667776555
Q ss_pred hcCCCCcEEEcccCc-CCC-CCcccccCC-------CCCCEEEcccCcCCCccch--HHHhcCCCCCEEEccCccCCCcC
Q 003888 271 DILPSLISFNISMNA-LDS-SIPSSFGNM-------NFLQILDLSNNQLTGEIPE--HLAVSCVNLEFLALSNNNLKGHM 339 (788)
Q Consensus 271 ~~l~~L~~L~L~~n~-~~~-~~~~~~~~l-------~~L~~L~l~~n~i~~~i~~--~~~~~l~~L~~L~L~~n~i~~~~ 339 (788)
. +++|++|++++|+ +++ .+|..++++ ++|++|++++|.++ .+|. .+ ..+++|++|++++|+++. .
T Consensus 513 ~-L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l-~~L~~L~~L~Ls~N~l~~-l 588 (876)
T 4ecn_A 513 D-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASL-QKMVKLGLLDCVHNKVRH-L 588 (876)
T ss_dssp G-CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHH-TTCTTCCEEECTTSCCCB-C
T ss_pred C-CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhh-hcCCCCCEEECCCCCccc-c
Confidence 4 6777777777776 665 556544433 47777777777777 7776 44 367777777777777773 3
Q ss_pred cccCcCCCCCCEEeccCCcCCCcCCccccCCCC-CCEEEccCCcCCCCCcccccCCCC--CCEEeCCCCcccCCcccc--
Q 003888 340 FSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSS-LEGLYLNNNSLSGKIPRWLGNLTG--LKHIIMPENHLEGPIPVG-- 414 (788)
Q Consensus 340 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~L~~n~i~~~~~~~~~~l~~--L~~L~l~~n~~~~~~~~~-- 414 (788)
+ .+..+++|+.|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..+..++. |+.|++++|.+.+..|..
T Consensus 589 p-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~ 665 (876)
T 4ecn_A 589 E-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665 (876)
T ss_dssp C-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSS
T ss_pred h-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchh
Confidence 3 6677777777777777777 66767777777 788888777777 56666665543 777888877776654422
Q ss_pred -cc--CCCCccEEEccCCcCCCCCCCCC-CCCCccEEEccCcccccccCccccc-------CCCCCcEEEccCCcCCCCC
Q 003888 415 -FC--QLYSLQILDISDNNISGSLPSCF-HPLSIEQVHLSKNMLHGQLKRGTFF-------HCSSLVTLDLSYNRLNGSI 483 (788)
Q Consensus 415 -~~--~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~-------~~~~L~~L~L~~n~l~~~~ 483 (788)
+. .+++|+.|++++|.+.......+ .+++|+.|++++|.+. .+|...+. ++++|+.|+|++|+++ .+
T Consensus 666 ~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~l 743 (876)
T 4ecn_A 666 SMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SL 743 (876)
T ss_dssp CTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CC
T ss_pred hhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cc
Confidence 11 23467777777776653222211 1233333333333332 22222121 1224444444444444 33
Q ss_pred Ccccc--CCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCccccccccc
Q 003888 484 PNWVD--GLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDS 561 (788)
Q Consensus 484 ~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (788)
|..+. .+++|+.|++++|++++ +|..+..+++|+.|++++|+
T Consensus 744 p~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~----------------------------------- 787 (876)
T 4ecn_A 744 SDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR----------------------------------- 787 (876)
T ss_dssp CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB-----------------------------------
T ss_pred hHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC-----------------------------------
Confidence 33333 44444444444444443 34444444444444444442
Q ss_pred ccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCC
Q 003888 562 MMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHI 641 (788)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 641 (788)
++++|.+.+.+|..|..+++|+.|+|++|++. .+|..+. ++|
T Consensus 788 -----------------------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L 829 (876)
T 4ecn_A 788 -----------------------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT--PQL 829 (876)
T ss_dssp -----------------------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--SSS
T ss_pred -----------------------------------CcccccccccChHHHhcCCCCCEEECCCCCCC-ccCHhhc--CCC
Confidence 22447888899999999999999999999994 5666655 699
Q ss_pred CEEECcCCcccccCCccccCCCCCCEEEccCCcCcc
Q 003888 642 ESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSG 677 (788)
Q Consensus 642 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 677 (788)
+.|||++|++....+..+.....+..+.+.+|++..
T Consensus 830 ~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 830 YILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865 (876)
T ss_dssp CEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred CEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence 999999999987777777766667777888887664
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.5e-40 Score=373.46 Aligned_cols=391 Identities=18% Similarity=0.106 Sum_probs=209.2
Q ss_pred CCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhhcCCCCCCEEECCCCcCcCcCChhhhcCCCC
Q 003888 45 MPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTS 124 (788)
Q Consensus 45 l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~ 124 (788)
+...+++|++++.+ ..+|. .+. ++|++|++++|.+++..|.+|.++++|++|++++|.++ .++...|.++++
T Consensus 30 ~~~~~~l~ls~~~L----~~ip~-~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~ 101 (562)
T 3a79_B 30 NELESMVDYSNRNL----THVPK-DLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQD 101 (562)
T ss_dssp ---CCEEECTTSCC----CSCCT-TSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTT
T ss_pred cCCCcEEEcCCCCC----ccCCC-CCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC-cCCHHHhCCCCC
Confidence 34446777777766 34554 232 56777777777776666666777777777777777776 343336667777
Q ss_pred CCEEECcCccccccCCccccccCCCCcEEEccCccccccccccccCCCCcccccEEEccCCCCCCCCcCccccCCCCCCE
Q 003888 125 IEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLED 204 (788)
Q Consensus 125 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 204 (788)
|++|++++|.++ .++.. .+++|++|++++|.+.+ ..+|..+..+++|++
T Consensus 102 L~~L~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~---------------------------l~~p~~~~~l~~L~~ 150 (562)
T 3a79_B 102 LEYLDVSHNRLQ-NISCC---PMASLRHLDLSFNDFDV---------------------------LPVCKEFGNLTKLTF 150 (562)
T ss_dssp CCEEECTTSCCC-EECSC---CCTTCSEEECCSSCCSB---------------------------CCCCGGGGGCTTCCE
T ss_pred CCEEECCCCcCC-ccCcc---ccccCCEEECCCCCccc---------------------------cCchHhhcccCcccE
Confidence 777777777665 33422 56666666666665432 012344555556666
Q ss_pred EEcCCCcCCCCCchhHhhcCCCC--CEEEcCCCcc--cccCccCcCCCC-CccEEEcccCcCcccCChhhhhcCCCCcEE
Q 003888 205 VRLSHVNMDGEFPNWLLENNTKL--RQLYLVNDSL--TGPFRLPIHSHR-WLRFLDVSNNNFQGHIPVEIGDILPSLISF 279 (788)
Q Consensus 205 L~l~~~~~~~~~~~~~~~~l~~L--~~L~L~~~~l--~~~~~~~l~~~~-~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L 279 (788)
|++++|.+.+... ..+++| ++|++++|.+ ++..+..+..+. ..-.+++++|.+.+.++...+..+++|+.+
T Consensus 151 L~L~~n~l~~~~~----~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L 226 (562)
T 3a79_B 151 LGLSAAKFRQLDL----LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLS 226 (562)
T ss_dssp EEEECSBCCTTTT----GGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEE
T ss_pred EecCCCccccCch----hhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEe
Confidence 6666655543211 223333 5555555555 444444433322 111345555555544444444444555555
Q ss_pred EcccCcCC----CCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEecc
Q 003888 280 NISMNALD----SSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLE 355 (788)
Q Consensus 280 ~L~~n~~~----~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 355 (788)
++++|... ......+.++++|+.++++++.+.+.....+. + ....++|++|+++
T Consensus 227 ~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~--------------------~--~~~~~~L~~L~l~ 284 (562)
T 3a79_B 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLF--------------------Q--FFWPRPVEYLNIY 284 (562)
T ss_dssp EEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHH--------------------H--HHTTSSEEEEEEE
T ss_pred cccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHH--------------------H--hhhcccccEEEEe
Confidence 55554311 01112344445555555544443321111100 0 0112355555555
Q ss_pred CCcCCCcCCccc-----cCCCCCCEEEccCCcCCCCCc-ccccC---CCCCCEEeCCCCcccCCccccccCCCCccEEEc
Q 003888 356 GNHLEGEIPQSL-----SKCSSLEGLYLNNNSLSGKIP-RWLGN---LTGLKHIIMPENHLEGPIPVGFCQLYSLQILDI 426 (788)
Q Consensus 356 ~n~l~~~~~~~l-----~~l~~L~~L~L~~n~i~~~~~-~~~~~---l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 426 (788)
+|.+++.+|..+ ..++.|+.++++.+.+ ..| ..+.. ..+|++|++++|.+.... ....+++|++|++
T Consensus 285 ~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 360 (562)
T 3a79_B 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNF 360 (562)
T ss_dssp EEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEEC
T ss_pred ccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEEC
Confidence 555554444444 4444444444444444 122 11111 245666666666654221 1245677777777
Q ss_pred cCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCC--CCccccCCCCCCEEEccCCcCc
Q 003888 427 SDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGS--IPNWVDGLSQLSHLILGHNNLE 504 (788)
Q Consensus 427 ~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~ 504 (788)
++|.+++..+. . +..+++|+.|++++|++++. .|..+..+++|++|++++|+++
T Consensus 361 ~~n~l~~~~~~-----------------------~-~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~ 416 (562)
T 3a79_B 361 TQNVFTDSVFQ-----------------------G-CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416 (562)
T ss_dssp CSSCCCTTTTT-----------------------T-CCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred CCCccccchhh-----------------------h-hcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC
Confidence 77776643221 1 55667777777777777753 2356778888888888888888
Q ss_pred c-ccCcccCCCCCCCEEEccCCcCC
Q 003888 505 G-EVPVQLCELNQLQLLDLSNNNLH 528 (788)
Q Consensus 505 ~-~~~~~l~~l~~L~~L~Ls~n~i~ 528 (788)
+ ..+..+..+++|+.|++++|+++
T Consensus 417 ~~~~~~~~~~l~~L~~L~l~~n~l~ 441 (562)
T 3a79_B 417 SHAYDRTCAWAESILVLNLSSNMLT 441 (562)
T ss_dssp SCCSSCCCCCCTTCCEEECCSSCCC
T ss_pred CccChhhhcCcccCCEEECCCCCCC
Confidence 6 33345777777777777777765
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=7.2e-40 Score=370.89 Aligned_cols=465 Identities=18% Similarity=0.148 Sum_probs=321.0
Q ss_pred CCCCCccEEEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhhc
Q 003888 16 PHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLA 95 (788)
Q Consensus 16 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~ 95 (788)
..+...+++++ +++++++ +|..+. ++|++|++++|.+ ..+++.+|.++++|++|+|++|++++..|.+|.
T Consensus 28 ~~~~~~~~l~l--s~~~L~~-ip~~~~---~~L~~L~Ls~N~i----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 97 (562)
T 3a79_B 28 FSNELESMVDY--SNRNLTH-VPKDLP---PRTKALSLSQNSI----SELRMPDISFLSELRVLRLSHNRIRSLDFHVFL 97 (562)
T ss_dssp -----CCEEEC--TTSCCCS-CCTTSC---TTCCEEECCSSCC----CCCCGGGTTTCTTCCEEECCSCCCCEECTTTTT
T ss_pred cccCCCcEEEc--CCCCCcc-CCCCCC---CCcCEEECCCCCc----cccChhhhccCCCccEEECCCCCCCcCCHHHhC
Confidence 44555689999 9999885 565443 7999999999999 566666899999999999999999988899999
Q ss_pred CCCCCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEEccCccccccccccccCCCCcc
Q 003888 96 NMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNF 175 (788)
Q Consensus 96 ~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 175 (788)
++++|++||+++|.++ .+|. . .+++|++|++++|.+.+......++++++|++|++++|.+.... +.. .+..
T Consensus 98 ~l~~L~~L~Ls~N~l~-~lp~-~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~-l~~L 169 (562)
T 3a79_B 98 FNQDLEYLDVSHNRLQ-NISC-C--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLP-VAHL 169 (562)
T ss_dssp TCTTCCEEECTTSCCC-EECS-C--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGG-GTTS
T ss_pred CCCCCCEEECCCCcCC-ccCc-c--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhh-hhhc
Confidence 9999999999999998 8988 3 89999999999999875322357899999999999999886521 111 1111
Q ss_pred cccEEEccCCCCC--CCCcCccccCCC-CCCEEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCccc----ccCccCcCCC
Q 003888 176 QLQALSLSSGYGD--GVTFPKFLYHQH-DLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLT----GPFRLPIHSH 248 (788)
Q Consensus 176 ~L~~L~l~~~~~~--~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~----~~~~~~l~~~ 248 (788)
+|+.|++ .++.+ .+..|..+..+. ..-.++++.|.+.+.++...+..+++|+.+++++|... ......+..+
T Consensus 170 ~L~~L~L-~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l 248 (562)
T 3a79_B 170 HLSCILL-DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRG 248 (562)
T ss_dssp CEEEEEE-EESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSC
T ss_pred eeeEEEe-ecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhcc
Confidence 4488888 55555 555666665543 11245677777777666665566777888888777411 0112235566
Q ss_pred CCccEEEcccCcCcccCChhhh--hcCCCCcEEEcccCcCCCCCcccc-----cCCCCCCEEEcccCcCCCccchHHHhc
Q 003888 249 RWLRFLDVSNNNFQGHIPVEIG--DILPSLISFNISMNALDSSIPSSF-----GNMNFLQILDLSNNQLTGEIPEHLAVS 321 (788)
Q Consensus 249 ~~L~~L~L~~n~i~~~~~~~~~--~~l~~L~~L~L~~n~~~~~~~~~~-----~~l~~L~~L~l~~n~i~~~i~~~~~~~ 321 (788)
++|+.++++++.+.+....... ...++|++|++++|.+++.+|..+ .+++.|+.+++..+.+ .+|......
T Consensus 249 ~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~ 326 (562)
T 3a79_B 249 PTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYS 326 (562)
T ss_dssp SSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHH
T ss_pred CcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhh
Confidence 7777777777765532221111 113478888888888877777765 5566666666666665 445322111
Q ss_pred ---CCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCC--CcccccCCCC
Q 003888 322 ---CVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGK--IPRWLGNLTG 396 (788)
Q Consensus 322 ---l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~ 396 (788)
..+|++|++++|.+..... ...+++|++|++++|.+++..|..+.++++|++|++++|.+++. .|..+..+++
T Consensus 327 ~~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~ 404 (562)
T 3a79_B 327 VFAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSS 404 (562)
T ss_dssp HHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTT
T ss_pred hhccCcceEEEccCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCC
Confidence 2567788887777654321 24667777777777777766677777777777777777777642 2345666777
Q ss_pred CCEEeCCCCcccCCcc-ccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEcc
Q 003888 397 LKHIIMPENHLEGPIP-VGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLS 475 (788)
Q Consensus 397 L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~ 475 (788)
|++|++++|.+.+.+| ..+..+++|++|++++|.++ +.++.. +. ++|+.|+++
T Consensus 405 L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~-----------------------~~~~~~-l~--~~L~~L~L~ 458 (562)
T 3a79_B 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT-----------------------GSVFRC-LP--PKVKVLDLH 458 (562)
T ss_dssp CCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCC-----------------------GGGGSS-CC--TTCSEEECC
T ss_pred CCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCC-----------------------cchhhh-hc--CcCCEEECC
Confidence 7777777777765333 34566667777777766654 333222 21 689999999
Q ss_pred CCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCC
Q 003888 476 YNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGP 530 (788)
Q Consensus 476 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~ 530 (788)
+|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|++...
T Consensus 459 ~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 459 NNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp SSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred CCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 99988 4666666889999999999999855444588899999999999988753
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.2e-39 Score=357.79 Aligned_cols=371 Identities=21% Similarity=0.219 Sum_probs=287.5
Q ss_pred EEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccC
Q 003888 253 FLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSN 332 (788)
Q Consensus 253 ~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~ 332 (788)
.++.+++.++ .+|. + .++|++|++++|.+++..|..|+++++|++|++++|.+.+.++...+.++++|++|++++
T Consensus 14 ~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 14 NAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp EEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 4566666665 5665 2 368888888888888777888888888888888888887677666666788888888888
Q ss_pred ccCCCcCcccCcCCCCCCEEeccCCcCCCcCCcc--ccCCCCCCEEEccCCcCCCCCccc-ccCCCCCCEEeCCCCcccC
Q 003888 333 NNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQS--LSKCSSLEGLYLNNNSLSGKIPRW-LGNLTGLKHIIMPENHLEG 409 (788)
Q Consensus 333 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--l~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~l~~n~~~~ 409 (788)
|++++..+..+.++++|++|++++|.+++..+.. +..+++|++|++++|.+++..|.. +..+++|++|++++|.+.+
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 8888887888888888888888888888644443 788888888888888888776665 7788888888888888887
Q ss_pred CccccccCC--CCccEEEccCCcCCCCCCCC---------CCCCCccEEEccCcccccccCcccccC---CCCCcEEEcc
Q 003888 410 PIPVGFCQL--YSLQILDISDNNISGSLPSC---------FHPLSIEQVHLSKNMLHGQLKRGTFFH---CSSLVTLDLS 475 (788)
Q Consensus 410 ~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~---------~~~~~L~~L~l~~n~~~~~~~~~~~~~---~~~L~~L~L~ 475 (788)
..+..+..+ .+|+.|++++|.+.+..+.. +..++|+.|++++|.+.+..+.. +.. .++|+.|+++
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR-FFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHH-HHHHTTTCCEEEEECT
T ss_pred cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhh-hhccccccceeeEeec
Confidence 777776655 68888888888887655433 23467888888888876665544 322 3778888888
Q ss_pred CCcCCCC----------CCccccC--CCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccc
Q 003888 476 YNRLNGS----------IPNWVDG--LSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHES 543 (788)
Q Consensus 476 ~n~l~~~----------~~~~~~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~ 543 (788)
+|...+. .+..+.+ .++|++|++++|.+++..+..+..+++|+.|++++|++.+..|..+..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------ 321 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG------ 321 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT------
T ss_pred cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC------
Confidence 8755432 1112222 367888888888888888888888888888888888888766666654
Q ss_pred cCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCC
Q 003888 544 SNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLS 623 (788)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 623 (788)
+++|+.|++++|.+++..|..|+.+++|++|+|+
T Consensus 322 ----------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 322 ----------------------------------------------LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355 (455)
T ss_dssp ----------------------------------------------CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred ----------------------------------------------cccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence 3478888888888888888888888888888888
Q ss_pred CCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCC
Q 003888 624 HNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPE 681 (788)
Q Consensus 624 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~ 681 (788)
+|++++..|..|.++++|++|++++|++++..+..+..+++|++|++++|+++|.+|.
T Consensus 356 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 356 YNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 8888888888888888888888888888876666778888888888888888888874
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.2e-38 Score=351.89 Aligned_cols=382 Identities=21% Similarity=0.220 Sum_probs=309.8
Q ss_pred EEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCcccccCccCcCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEccc
Q 003888 204 DVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISM 283 (788)
Q Consensus 204 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~ 283 (788)
.++.+++.+.. +|. + .++|++|++++|.+++..+..+..+++|++|++++|.+.+.++...+..+++|++|++++
T Consensus 14 ~~~c~~~~l~~-lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 14 NAICINRGLHQ-VPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp EEECCSSCCSS-CCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccCcCCCCccc-CCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 44555554433 444 2 367888899888888888888889999999999999887777766666688999999999
Q ss_pred CcCCCCCcccccCCCCCCEEEcccCcCCCccchH-HHhcCCCCCEEEccCccCCCcCccc-CcCCCCCCEEeccCCcCCC
Q 003888 284 NALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEH-LAVSCVNLEFLALSNNNLKGHMFSR-NFNLTNLRSLQLEGNHLEG 361 (788)
Q Consensus 284 n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~-~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~l~~n~l~~ 361 (788)
|.+++..|..|+++++|++|++++|.+++.++.. .+..+++|++|++++|.+++..+.. +.++++|++|++++|.+++
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 9998888888999999999999999988544443 3446889999999999998876665 7788999999999999988
Q ss_pred cCCccccCC--CCCCEEEccCCcCCCCCccc--------ccCCCCCCEEeCCCCcccCCccccccCC---CCccEEEccC
Q 003888 362 EIPQSLSKC--SSLEGLYLNNNSLSGKIPRW--------LGNLTGLKHIIMPENHLEGPIPVGFCQL---YSLQILDISD 428 (788)
Q Consensus 362 ~~~~~l~~l--~~L~~L~L~~n~i~~~~~~~--------~~~l~~L~~L~l~~n~~~~~~~~~~~~l---~~L~~L~l~~ 428 (788)
..+..+..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|.+.+..+..+... ++|+.|++++
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 878777765 68899999999888655443 2356789999999999887777666543 7899999999
Q ss_pred CcCCCCCCCCCCCCCccEEEccCcccccccCccccc--CCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccc
Q 003888 429 NNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFF--HCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGE 506 (788)
Q Consensus 429 n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 506 (788)
|...+......... . .....+. ..++|+.|++++|.+++..|..+..+++|++|++++|++++.
T Consensus 249 ~~~~~~~~~~~~~~-------------~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 314 (455)
T 3v47_A 249 SYNMGSSFGHTNFK-------------D-PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314 (455)
T ss_dssp CTTTSCCTTCCSSC-------------C-CCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred ccccccccchhhhc-------------c-CcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence 87654322211111 1 1111122 237899999999999998999999999999999999999988
Q ss_pred cCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeec
Q 003888 507 VPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQ 586 (788)
Q Consensus 507 ~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (788)
.+..|.++++|+.|++++|++.+..|..+..
T Consensus 315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------------------------------------- 345 (455)
T 3v47_A 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN------------------------------------------------- 345 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECGGGGTT-------------------------------------------------
T ss_pred ChhHhcCcccCCEEECCCCccCCcChhHhcC-------------------------------------------------
Confidence 8999999999999999999997666655544
Q ss_pred ccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCC
Q 003888 587 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP 656 (788)
Q Consensus 587 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 656 (788)
+++|+.|++++|++++..|..|..+++|++|+|++|+++++.+..|+.+++|++|++++|++++..|
T Consensus 346 ---l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 346 ---LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp ---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ---cccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 4589999999999999999999999999999999999999888889999999999999999998877
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.6e-38 Score=342.81 Aligned_cols=220 Identities=32% Similarity=0.395 Sum_probs=124.8
Q ss_pred CCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEE
Q 003888 249 RWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFL 328 (788)
Q Consensus 249 ~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L 328 (788)
++|++|++++|.++ .++.. .++|++|++++|.+++ +| .++++++|++|++++|+++ .+|.. .++|++|
T Consensus 111 ~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L 178 (454)
T 1jl5_A 111 QSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFI 178 (454)
T ss_dssp TTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEE
T ss_pred CCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEE
Confidence 44555555555554 22211 2467777777777765 44 4777777777777777776 45542 3467777
Q ss_pred EccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCccc
Q 003888 329 ALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLE 408 (788)
Q Consensus 329 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~ 408 (788)
++++|++++.. .+.++++|++|++++|.+++ +|.. .++|++|++++|.+. .+| .+..+++|++|++++|++.
T Consensus 179 ~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 179 AAGNNQLEELP--ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp ECCSSCCSSCC--CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS
T ss_pred ECcCCcCCcCc--cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC
Confidence 77777776632 46667777777777777663 3332 246677777777666 444 3666667777777776666
Q ss_pred CCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCcccc
Q 003888 409 GPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVD 488 (788)
Q Consensus 409 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 488 (788)
+ +|. ..++|++|++++|.+++.. .. +++|+.|++++|++++. |.
T Consensus 251 ~-l~~---~~~~L~~L~l~~N~l~~l~-~~---------------------------~~~L~~L~ls~N~l~~l-~~--- 294 (454)
T 1jl5_A 251 T-LPD---LPPSLEALNVRDNYLTDLP-EL---------------------------PQSLTFLDVSENIFSGL-SE--- 294 (454)
T ss_dssp S-CCS---CCTTCCEEECCSSCCSCCC-CC---------------------------CTTCCEEECCSSCCSEE-SC---
T ss_pred c-ccc---cccccCEEECCCCcccccC-cc---------------------------cCcCCEEECcCCccCcc-cC---
Confidence 4 222 1356666666666655321 11 14555555555555431 11
Q ss_pred CCCCCCEEEccCCcCccccCcccCCC-CCCCEEEccCCcCCC
Q 003888 489 GLSQLSHLILGHNNLEGEVPVQLCEL-NQLQLLDLSNNNLHG 529 (788)
Q Consensus 489 ~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~Ls~n~i~~ 529 (788)
..++|++|++++|++++. + .+ ++|+.|++++|++.+
T Consensus 295 ~~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~ 331 (454)
T 1jl5_A 295 LPPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE 331 (454)
T ss_dssp CCTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC
T ss_pred cCCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc
Confidence 014556666666655531 1 12 356666666665553
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.3e-36 Score=330.00 Aligned_cols=392 Identities=26% Similarity=0.310 Sum_probs=224.9
Q ss_pred CCCCCEEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCcccccCccCcCCCCCc-------------cEEEcccCcCcccC
Q 003888 199 QHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWL-------------RFLDVSNNNFQGHI 265 (788)
Q Consensus 199 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L-------------~~L~L~~n~i~~~~ 265 (788)
.+.|++++++++.+ +.+|..+ +++++|++|++++|.+++..|..++.+.+| ++|++++|.++ .+
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i-~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~l 86 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEA-ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SL 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CC
T ss_pred cccchhhhcccCch-hhCChhH-hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cC
Confidence 45667777777776 6677664 567777777777777777777777766654 77777777766 34
Q ss_pred ChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcC
Q 003888 266 PVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFN 345 (788)
Q Consensus 266 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 345 (788)
|. ..++|++|++++|.+++ +|.. +++|++|++++|.++ .++.. .++|++|++++|+++++. .+.+
T Consensus 87 p~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~lp--~~~~ 151 (454)
T 1jl5_A 87 PE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEKLP--ELQN 151 (454)
T ss_dssp CS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSSCC--CCTT
T ss_pred CC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCCCc--ccCC
Confidence 43 13577777777777765 4432 366777777777776 44421 256777777777777633 4667
Q ss_pred CCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEE
Q 003888 346 LTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILD 425 (788)
Q Consensus 346 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 425 (788)
+++|++|++++|++++ +|..+ ++|++|++++|.+++ .| .++.+++|++|++++|.+.+ +|.. .++|++|+
T Consensus 152 l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ 221 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIV 221 (454)
T ss_dssp CTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEE
T ss_pred CCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEE
Confidence 7777777777777764 44332 467777777777764 34 46777777777777777764 2321 24677777
Q ss_pred ccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCcc
Q 003888 426 ISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEG 505 (788)
Q Consensus 426 l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 505 (788)
+++|.+. ..+....+++|+.|++++|.+.+ ++. .+++|+.|++++|++++ +|.. +++|++|++++|++++
T Consensus 222 l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 222 AGNNILE-ELPELQNLPFLTTIYADNNLLKT-LPD----LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG 291 (454)
T ss_dssp CCSSCCS-SCCCCTTCTTCCEEECCSSCCSS-CCS----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE
T ss_pred CcCCcCC-cccccCCCCCCCEEECCCCcCCc-ccc----cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc
Confidence 7777776 33444446677777777777643 332 23678888888888775 4432 3678888888888775
Q ss_pred ccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeee
Q 003888 506 EVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIY 585 (788)
Q Consensus 506 ~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (788)
. +.. .++|+.|++++|++.+..
T Consensus 292 l-~~~---~~~L~~L~l~~N~l~~i~------------------------------------------------------ 313 (454)
T 1jl5_A 292 L-SEL---PPNLYYLNASSNEIRSLC------------------------------------------------------ 313 (454)
T ss_dssp E-SCC---CTTCCEEECCSSCCSEEC------------------------------------------------------
T ss_pred c-cCc---CCcCCEEECcCCcCCccc------------------------------------------------------
Confidence 3 211 257888888888775311
Q ss_pred cccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccc--cCCccccCC-
Q 003888 586 QGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG--KIPHQLVEL- 662 (788)
Q Consensus 586 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l- 662 (788)
..+++|+.|++++|++++ +|.. +++|++|++++|+++++ |. .+++|++|++++|++++ .+|..+..+
T Consensus 314 --~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~l-p~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~ 383 (454)
T 1jl5_A 314 --DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEV-PE---LPQNLKQLHVEYNPLREFPDIPESVEDLR 383 (454)
T ss_dssp --CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSCCCCCTTCCEEE
T ss_pred --CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccc-cc---hhhhccEEECCCCCCCcCCCChHHHHhhh
Confidence 012479999999999986 5544 58899999999999964 44 47899999999999998 678888777
Q ss_pred ------------CCCCEEEccCCcCcc--cCCCcccccCCCCccccCCCCCCCC
Q 003888 663 ------------KTLAVFSVAYNNLSG--EIPEWTAQFATFNESSYEGNTFLCG 702 (788)
Q Consensus 663 ------------~~L~~L~l~~N~l~~--~~p~~~~~~~~~~~~~~~gn~~~c~ 702 (788)
++|+.|++++|++++ .+|.+ +..+.+.+|.+.|.
T Consensus 384 ~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~ 431 (454)
T 1jl5_A 384 MNSHLAEVPELPQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDP 431 (454)
T ss_dssp CCC---------------------------------------------------
T ss_pred hcccccccccccCcCCEEECCCCcCCccccchhh------HhheeCcCcccCCc
Confidence 889999999999997 66654 33445555555443
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-36 Score=337.97 Aligned_cols=347 Identities=21% Similarity=0.192 Sum_probs=223.5
Q ss_pred cEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccC
Q 003888 277 ISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEG 356 (788)
Q Consensus 277 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~ 356 (788)
+.++.+++.++ .+|..+ .+++++|++++|.++ .++...+..+++|++|++++|.++++.+..|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 34555555554 233332 235566666666655 33333333455566666666555555555555555556666655
Q ss_pred CcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCC
Q 003888 357 NHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLP 436 (788)
Q Consensus 357 n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 436 (788)
|.++...+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.++
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---- 165 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT---- 165 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS----
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc----
Confidence 5555444444555555555555555555444555555555555555555555555555555555555555555443
Q ss_pred CCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCC
Q 003888 437 SCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQ 516 (788)
Q Consensus 437 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 516 (788)
.++...+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+..+.......+
T Consensus 166 --------------------~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 225 (477)
T 2id5_A 166 --------------------SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225 (477)
T ss_dssp --------------------SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred --------------------ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcc
Confidence 233334677788888888888888777777888888888888888776666666666668
Q ss_pred CCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEE
Q 003888 517 LQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGL 596 (788)
Q Consensus 517 L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 596 (788)
|+.|++++|++.+..+..+.. +++|+.|
T Consensus 226 L~~L~l~~n~l~~~~~~~~~~----------------------------------------------------l~~L~~L 253 (477)
T 2id5_A 226 LTSLSITHCNLTAVPYLAVRH----------------------------------------------------LVYLRFL 253 (477)
T ss_dssp CSEEEEESSCCCSCCHHHHTT----------------------------------------------------CTTCCEE
T ss_pred ccEEECcCCcccccCHHHhcC----------------------------------------------------ccccCee
Confidence 888888888776433223322 4478888
Q ss_pred ECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCc
Q 003888 597 DLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLS 676 (788)
Q Consensus 597 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 676 (788)
+|++|.+++..+..|..+++|++|+|++|+++++.|..|.++++|++|++++|++++..+..|..+++|+.|++++|++.
T Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 254 NLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp ECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 88888888777777888888888888888888888888888888888888888888766677788888888888888888
Q ss_pred ccCCCcccccCCCCccccCCCCCCCCCC
Q 003888 677 GEIPEWTAQFATFNESSYEGNTFLCGLP 704 (788)
Q Consensus 677 ~~~p~~~~~~~~~~~~~~~gn~~~c~~~ 704 (788)
|..+.. ..+.......+.++...|..|
T Consensus 334 c~c~~~-~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 334 CDCRLL-WVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp CSGGGH-HHHTTTTSSCCTTCCCBEEES
T ss_pred CccchH-hHHhhhhccccCccCceeCCc
Confidence 654421 112233345566666666544
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=8.1e-36 Score=331.00 Aligned_cols=349 Identities=21% Similarity=0.212 Sum_probs=291.9
Q ss_pred cEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEcc
Q 003888 252 RFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALS 331 (788)
Q Consensus 252 ~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~ 331 (788)
+.++.+++.++ .+|..+ .+++++|++++|.+++..+..|.++++|++|++++|.+++..|.. +.++++|++|+++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~ 88 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA-FNNLFNLRTLGLR 88 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhh-hhCCccCCEEECC
Confidence 56888888887 788765 358999999999999888889999999999999999998433444 4579999999999
Q ss_pred CccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCc
Q 003888 332 NNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPI 411 (788)
Q Consensus 332 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 411 (788)
+|+++.+....|.++++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 99999888888889999999999999999888888999999999999999998888888999999999999999999877
Q ss_pred cccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCC
Q 003888 412 PVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLS 491 (788)
Q Consensus 412 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 491 (788)
+..+..+++|+.|++++|.+.+. +...|..+++|+.|++++|...+.++.......
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~------------------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 224 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAI------------------------RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL 224 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEE------------------------CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTC
T ss_pred hhHhcccCCCcEEeCCCCcCcEe------------------------ChhhcccCcccceeeCCCCccccccCcccccCc
Confidence 77889999999999999987632 223377889999999999987777776666667
Q ss_pred CCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccc
Q 003888 492 QLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIH 571 (788)
Q Consensus 492 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (788)
+|++|++++|++++..+..+..+++|+.|++++|++.+..+..+..
T Consensus 225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---------------------------------- 270 (477)
T 2id5_A 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE---------------------------------- 270 (477)
T ss_dssp CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT----------------------------------
T ss_pred cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc----------------------------------
Confidence 9999999999999666677899999999999999988766655554
Q ss_pred cceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcc
Q 003888 572 ENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKL 651 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 651 (788)
+++|+.|+|++|++++..|..|..+++|+.|+|++|+++++.+..|..+++|++|++++|++
T Consensus 271 ------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 271 ------------------LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp ------------------CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred ------------------cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 45899999999999999899999999999999999999998888899999999999999999
Q ss_pred cccCCccccCCCCCCEEEccCCcCcccCCCc
Q 003888 652 NGKIPHQLVELKTLAVFSVAYNNLSGEIPEW 682 (788)
Q Consensus 652 ~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~ 682 (788)
.+..+..+ -......+.+.++...|..|..
T Consensus 333 ~c~c~~~~-~~~~~~~~~~~~~~~~C~~p~~ 362 (477)
T 2id5_A 333 ACDCRLLW-VFRRRWRLNFNRQQPTCATPEF 362 (477)
T ss_dssp ECSGGGHH-HHTTTTSSCCTTCCCBEEESGG
T ss_pred cCccchHh-HHhhhhccccCccCceeCCchH
Confidence 86544221 1223344556677777766654
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.2e-34 Score=319.77 Aligned_cols=347 Identities=27% Similarity=0.375 Sum_probs=244.3
Q ss_pred cCCCCCEEEcCCCcccccCccCcCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCE
Q 003888 223 NNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQI 302 (788)
Q Consensus 223 ~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 302 (788)
.+++++.|++.++.+... ..+..+++|++|++++|.+++ ++. +..+++|++|++++|.+.+..+ +.++++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l--~~~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred HhccccEEecCCCCCccC--cchhhhcCCCEEECCCCccCC-chh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 356777777777776642 235666777777777777663 333 3336677777777777665443 667777777
Q ss_pred EEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCc
Q 003888 303 LDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNS 382 (788)
Q Consensus 303 L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 382 (788)
|++++|.++ .++. +..+++|++|++++|.+++.. .+..+++|++|+++ +.+.+. ..+.++++|++|++++|.
T Consensus 117 L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 117 LTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNK 188 (466)
T ss_dssp EECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSC
T ss_pred EECCCCCCC-CChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCc
Confidence 777777766 4443 335667777777777666532 35566667777665 333322 226666666666666666
Q ss_pred CCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCccc
Q 003888 383 LSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGT 462 (788)
Q Consensus 383 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 462 (788)
+.+. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. ..
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--------------------------~~ 238 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--------------------------GT 238 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--------------------------GG
T ss_pred CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--------------------------hh
Confidence 6532 235566666666666666665433 45566666666666655421 12
Q ss_pred ccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCccccc
Q 003888 463 FFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE 542 (788)
Q Consensus 463 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 542 (788)
+..+++|+.|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|++.+..+ +..
T Consensus 239 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~----- 307 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN----- 307 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGG-----
T ss_pred hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcC-----
Confidence 6778899999999999886544 7888999999999999986544 7889999999999998875432 111
Q ss_pred ccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeC
Q 003888 543 SSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNL 622 (788)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 622 (788)
+++|+.|++++|++++..| +..+++|++|++
T Consensus 308 -----------------------------------------------l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 338 (466)
T 1o6v_A 308 -----------------------------------------------LKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 338 (466)
T ss_dssp -----------------------------------------------CTTCSEEECCSSCCSCCGG--GGGCTTCCEEEC
T ss_pred -----------------------------------------------CCCCCEEECcCCcCCCchh--hccCccCCEeEC
Confidence 5689999999999987655 788999999999
Q ss_pred CCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCccc
Q 003888 623 SHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGE 678 (788)
Q Consensus 623 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 678 (788)
++|++++. ..+..+++|++|++++|++++..| +..+++|+.|++++|++++.
T Consensus 339 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 339 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 99999976 578899999999999999988776 78899999999999999874
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.4e-34 Score=317.47 Aligned_cols=346 Identities=27% Similarity=0.376 Sum_probs=287.1
Q ss_pred CCCCCCEEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCcccccCccCcCCCCCccEEEcccCcCcccCChhhhhcCCCCc
Q 003888 198 HQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLI 277 (788)
Q Consensus 198 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~ 277 (788)
.+++++.|+++++.+.. +|. +..+++|++|++++|.+++..+ +..+++|++|++++|.+.+ ++. +..+++|+
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~ 115 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-IDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-ITP--LANLTNLT 115 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG--GTTCTTCC
T ss_pred HhccccEEecCCCCCcc-Ccc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcccc-Chh--hcCCCCCC
Confidence 46789999999998765 554 3689999999999999998655 8999999999999999984 443 44589999
Q ss_pred EEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCC
Q 003888 278 SFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGN 357 (788)
Q Consensus 278 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n 357 (788)
+|++++|.+++..+ +.++++|++|++++|.+. .++. +..+++|++|+++ |.+.+.. .+.++++|++|++++|
T Consensus 116 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 116 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSN 187 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSS
T ss_pred EEECCCCCCCCChH--HcCCCCCCEEECCCCccC-CChh--hccCCcccEeecC-CcccCch--hhccCCCCCEEECcCC
Confidence 99999999987543 899999999999999998 5664 4479999999997 5555543 3789999999999999
Q ss_pred cCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCC
Q 003888 358 HLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPS 437 (788)
Q Consensus 358 ~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 437 (788)
.+++. ..+..+++|++|++++|.+.+..+ ++.+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+
T Consensus 188 ~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~- 260 (466)
T 1o6v_A 188 KVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP- 260 (466)
T ss_dssp CCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred cCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh-
Confidence 99854 358899999999999999986655 77899999999999999864 467889999999999998864321
Q ss_pred CCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCC
Q 003888 438 CFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQL 517 (788)
Q Consensus 438 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 517 (788)
+..+++|+.|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|
T Consensus 261 -------------------------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 311 (466)
T 1o6v_A 261 -------------------------LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL 311 (466)
T ss_dssp -------------------------GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred -------------------------hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCC
Confidence 5667888888998888886543 7788899999999998886544 7788999
Q ss_pred CEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEE
Q 003888 518 QLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLD 597 (788)
Q Consensus 518 ~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 597 (788)
+.|++++|++.+..| +.. +++|+.|+
T Consensus 312 ~~L~L~~n~l~~~~~--~~~----------------------------------------------------l~~L~~L~ 337 (466)
T 1o6v_A 312 TYLTLYFNNISDISP--VSS----------------------------------------------------LTKLQRLF 337 (466)
T ss_dssp SEEECCSSCCSCCGG--GGG----------------------------------------------------CTTCCEEE
T ss_pred CEEECcCCcCCCchh--hcc----------------------------------------------------CccCCEeE
Confidence 999999998876543 211 45899999
Q ss_pred CCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccc
Q 003888 598 LSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG 653 (788)
Q Consensus 598 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 653 (788)
+++|++++. ..+..+++|+.|++++|++++..| +..+++|++|++++|++++
T Consensus 338 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 999998865 478899999999999999998876 8889999999999999985
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=7e-35 Score=318.59 Aligned_cols=362 Identities=19% Similarity=0.179 Sum_probs=231.0
Q ss_pred CcCccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCcccccCccCcCCCCCccEEEcccCcCcccCChhhh
Q 003888 191 TFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIG 270 (788)
Q Consensus 191 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~ 270 (788)
..+..+..+++|++|+++++.+.+ +| . +..+++|++|++++|.+++. .+..+++|++|++++|.+++ ++ +
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~-l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~-~~--~- 102 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNSSITD-MT-G-IEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTN-LD--V- 102 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSSCCCC-CT-T-GGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--C-
T ss_pred ccccChhHcCCCCEEEccCCCccc-Ch-h-hcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCce-ee--c-
Confidence 344556677788888888887775 34 2 35777888888888877764 26677777777777777764 33 2
Q ss_pred hcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCC
Q 003888 271 DILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLR 350 (788)
Q Consensus 271 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 350 (788)
..+++|++|++++|.+++. + ++.+++|++|++++|.++ .++ ...+++|++|++++|+..+.. .+..+++|+
T Consensus 103 ~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~-~l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~ 173 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLT-EID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLT 173 (457)
T ss_dssp TTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCS-CCC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred CCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccc-eec---cccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence 2367777777777777653 2 667777777777777776 343 235677777777777433322 355667777
Q ss_pred EEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCc
Q 003888 351 SLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNN 430 (788)
Q Consensus 351 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 430 (788)
+|++++|++++ +| +..+++|+.|++++|.+++. .+..+++|++|++++|++++ +| +..+++|+.|++++|.
T Consensus 174 ~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 174 TLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp EEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSC
T ss_pred EEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCc
Confidence 77777777764 33 56667777777777776643 25666777777777777765 33 5666677777777776
Q ss_pred CCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcc
Q 003888 431 ISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQ 510 (788)
Q Consensus 431 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 510 (788)
+++..+. .+++++.|+++++ +|+.|++++|.+.+.+| +..+++|+.|++++|...+.+|.
T Consensus 245 l~~~~~~--~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~- 304 (457)
T 3bz5_A 245 LTELDVS--TLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC- 304 (457)
T ss_dssp CSCCCCT--TCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC-
T ss_pred CCCcCHH--HCCCCCEEeccCC---------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc-
Confidence 6654221 1233444433322 23334444444333332 23344444444444443333332
Q ss_pred cCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeeccccc
Q 003888 511 LCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVL 590 (788)
Q Consensus 511 l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 590 (788)
..++|+.|++++ .
T Consensus 305 --~~~~L~~L~l~~-----------------------------------------------------------------~ 317 (457)
T 3bz5_A 305 --QAAGITELDLSQ-----------------------------------------------------------------N 317 (457)
T ss_dssp --TTCCCSCCCCTT-----------------------------------------------------------------C
T ss_pred --CCCcceEechhh-----------------------------------------------------------------c
Confidence 122333333333 2
Q ss_pred ccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEc
Q 003888 591 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSV 670 (788)
Q Consensus 591 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 670 (788)
++|+.|++++|++++. + ++.+++|+.|++++|+++++ +.|+.|++++|.+.+. ..+..|..+++
T Consensus 318 ~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~l--------~~L~~L~l~~n~l~g~-----~~~~~l~~l~l 381 (457)
T 3bz5_A 318 PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQDF--------SSVGKIPALNNNFEAE-----GQTITMPKETL 381 (457)
T ss_dssp TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCBC--------TTGGGSSGGGTSEEEE-----EEEEECCCBCC
T ss_pred ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCCc--------cccccccccCCcEEec-----ceeeecCcccc
Confidence 4799999999999974 3 88999999999999999863 5677788999999865 34566788899
Q ss_pred cCCcCcccCCCcc
Q 003888 671 AYNNLSGEIPEWT 683 (788)
Q Consensus 671 ~~N~l~~~~p~~~ 683 (788)
++|+++|.+|..+
T Consensus 382 ~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 382 TNNSLTIAVSPDL 394 (457)
T ss_dssp BTTBEEEECCTTC
T ss_pred ccCcEEEEcChhH
Confidence 9999999998743
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=5.1e-34 Score=307.57 Aligned_cols=334 Identities=23% Similarity=0.219 Sum_probs=179.8
Q ss_pred CCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEE
Q 003888 298 NFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLY 377 (788)
Q Consensus 298 ~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 377 (788)
+++++|++++|.++ .+|..++..+++|++|++++|.++++.+..+..+++|++|++++|.+++..|..+.++++|++|+
T Consensus 45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 44555555555554 45554444455555555555555555444555555555555555555544455555555555555
Q ss_pred ccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccc
Q 003888 378 LNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQ 457 (788)
Q Consensus 378 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 457 (788)
+++|.++...+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.. ....++++.+++++|.+.+
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~- 200 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST- 200 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSE-
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccc-
Confidence 5555555333333455555555555555555544455555555555555555554321 1112344444444443322
Q ss_pred cCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcC
Q 003888 458 LKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDN 537 (788)
Q Consensus 458 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~ 537 (788)
+...++|+.|++++|.+... |. ...++|++|++++|.+++. ..+..+++|+.|++++|.+.+..|..+..
T Consensus 201 -----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (390)
T 3o6n_A 201 -----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK 270 (390)
T ss_dssp -----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred -----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc
Confidence 22234566666666665533 22 1235566666666666532 34555666666666666655444433332
Q ss_pred cccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccC
Q 003888 538 TTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRI 617 (788)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 617 (788)
+++|+.|++++|++++ +|..+..+++|
T Consensus 271 ----------------------------------------------------l~~L~~L~L~~n~l~~-~~~~~~~l~~L 297 (390)
T 3o6n_A 271 ----------------------------------------------------MQRLERLYISNNRLVA-LNLYGQPIPTL 297 (390)
T ss_dssp ----------------------------------------------------CSSCCEEECCSSCCCE-EECSSSCCTTC
T ss_pred ----------------------------------------------------cccCCEEECCCCcCcc-cCcccCCCCCC
Confidence 2356666666666653 34445566677
Q ss_pred CeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCCcccccCCCCccccCCC
Q 003888 618 QTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGN 697 (788)
Q Consensus 618 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~gn 697 (788)
++|++++|+++++ |..+..+++|++|++++|+++.. | +..+++|+.|++++|++.+.... ..+..+....+.++
T Consensus 298 ~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~ 371 (390)
T 3o6n_A 298 KVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDDA 371 (390)
T ss_dssp CEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCCC
T ss_pred CEEECCCCcceec-CccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH--HHHHHHHhhccccc
Confidence 7777777777643 44456667777777777777643 2 45667777777777777764321 22334444556666
Q ss_pred CCCCCCC
Q 003888 698 TFLCGLP 704 (788)
Q Consensus 698 ~~~c~~~ 704 (788)
+..|.++
T Consensus 372 ~~~c~~~ 378 (390)
T 3o6n_A 372 DQHCKID 378 (390)
T ss_dssp CSCCCTT
T ss_pred Cceeccc
Confidence 6666543
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.5e-33 Score=305.20 Aligned_cols=63 Identities=22% Similarity=0.256 Sum_probs=40.4
Q ss_pred cccCCCCCCEEEcCCCCCCcCCChhhcCCCCCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCccccc
Q 003888 69 GLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQI 137 (788)
Q Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~ 137 (788)
.++++++|++|++++|.+++. | .++.+++|++|++++|.++ .+| ++.+++|++|++++|.+++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N~l~~ 99 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNIT-TLD---LSQNTNLTYLACDSNKLTN 99 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSC
T ss_pred ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCC-eEc---cccCCCCCEEECcCCCCce
Confidence 466667777777777776643 4 5666777777777777666 343 5566666666666666553
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4e-33 Score=317.13 Aligned_cols=334 Identities=23% Similarity=0.223 Sum_probs=192.4
Q ss_pred CCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEE
Q 003888 298 NFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLY 377 (788)
Q Consensus 298 ~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 377 (788)
++++.+++++|.+. .+|..++..+++|++|++++|.++++.+..+..+++|++|++++|.+++..|..|+++++|++|+
T Consensus 51 ~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 34444444444443 44444444444555555555544444444444455555555555555444444444555555555
Q ss_pred ccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccc
Q 003888 378 LNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQ 457 (788)
Q Consensus 378 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 457 (788)
+++|.+++..+..|..+++|++|++++|.+.+..|..|..+++|++|++++|.+++.. ...+++|+.|++++|.+.+
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~- 206 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST- 206 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSE-
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcccc-
Confidence 5555554333333444555555555555554444444555555555555555444321 1113344444444444422
Q ss_pred cCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcC
Q 003888 458 LKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDN 537 (788)
Q Consensus 458 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~ 537 (788)
+...++|+.|++++|.+....+. + .++|+.|++++|.+++ +..+..+++|+.|++++|.+.+..|..+..
T Consensus 207 -----l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 276 (597)
T 3oja_B 207 -----LAIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK 276 (597)
T ss_dssp -----EECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred -----ccCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence 23335677777777776533222 1 2567777777777764 245667777777777777776655554443
Q ss_pred cccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccC
Q 003888 538 TTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRI 617 (788)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 617 (788)
+++|+.|+|++|.+++ +|..+..+++|
T Consensus 277 ----------------------------------------------------l~~L~~L~Ls~N~l~~-l~~~~~~l~~L 303 (597)
T 3oja_B 277 ----------------------------------------------------MQRLERLYISNNRLVA-LNLYGQPIPTL 303 (597)
T ss_dssp ----------------------------------------------------CSSCCEEECTTSCCCE-EECSSSCCTTC
T ss_pred ----------------------------------------------------ccCCCEEECCCCCCCC-CCcccccCCCC
Confidence 3467777777777774 45566677888
Q ss_pred CeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCCcccccCCCCccccCCC
Q 003888 618 QTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGN 697 (788)
Q Consensus 618 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~gn 697 (788)
+.|+|++|.+++ +|..+..+++|++|++++|++++. | +..+++|+.|++++|++.|..+. ..+..+....+.++
T Consensus 304 ~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~ 377 (597)
T 3oja_B 304 KVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDDA 377 (597)
T ss_dssp CEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCCC
T ss_pred cEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH--HHHHHHhhhccccc
Confidence 888888888884 456677788888888888888754 2 56678888888888888875432 23445556667788
Q ss_pred CCCCCCC
Q 003888 698 TFLCGLP 704 (788)
Q Consensus 698 ~~~c~~~ 704 (788)
+..|+.+
T Consensus 378 ~~~C~~~ 384 (597)
T 3oja_B 378 DQHCKID 384 (597)
T ss_dssp CCCCCTT
T ss_pred cccCCcc
Confidence 8777653
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=6.3e-32 Score=286.58 Aligned_cols=304 Identities=24% Similarity=0.341 Sum_probs=182.3
Q ss_pred CCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEE
Q 003888 273 LPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSL 352 (788)
Q Consensus 273 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 352 (788)
+++|++|++++|.+... + .+..+++|++|++++|.++ .++. +..+++|++|++++|.++.. ..+.++++|++|
T Consensus 43 l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L 115 (347)
T 4fmz_A 43 LESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL 115 (347)
T ss_dssp HTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred cccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence 34555555555555432 2 2555555666666666555 3443 33455666666666655543 235556666666
Q ss_pred eccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCC
Q 003888 353 QLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNIS 432 (788)
Q Consensus 353 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 432 (788)
++++|.+++. +. +..+++|++|++++|...... ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.
T Consensus 116 ~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 116 YLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp ECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred ECcCCcccCc-hh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence 6666665532 22 556666666666666443222 235566666666666666554332 555666666666666554
Q ss_pred CCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccC
Q 003888 433 GSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLC 512 (788)
Q Consensus 433 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 512 (788)
+.. . +..+++|+.|++++|.+++..+ +..+++|++|++++|.+++..+ +.
T Consensus 191 ~~~------------------------~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~ 240 (347)
T 4fmz_A 191 DIS------------------------P--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LA 240 (347)
T ss_dssp CCG------------------------G--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT
T ss_pred ccc------------------------c--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hh
Confidence 221 1 4455666667777666664333 5666677777777777664433 66
Q ss_pred CCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeeccccccc
Q 003888 513 ELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSL 592 (788)
Q Consensus 513 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 592 (788)
.+++|++|++++|.+.+. ..+. .+++
T Consensus 241 ~l~~L~~L~l~~n~l~~~--~~~~----------------------------------------------------~l~~ 266 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQISDI--NAVK----------------------------------------------------DLTK 266 (347)
T ss_dssp TCTTCCEEECCSSCCCCC--GGGT----------------------------------------------------TCTT
T ss_pred cCCCCCEEECCCCccCCC--hhHh----------------------------------------------------cCCC
Confidence 677777777777766532 1111 1346
Q ss_pred ccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccC
Q 003888 593 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAY 672 (788)
Q Consensus 593 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~ 672 (788)
|+.|++++|.+++. ..+..+++|++|++++|++++..+..++.+++|++|++++|++++..| +..+++|+.|++++
T Consensus 267 L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 267 LKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFAN 342 (347)
T ss_dssp CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSC
T ss_pred cCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhh
Confidence 77777777777653 357777788888888888877777777778888888888888776555 67778888888888
Q ss_pred CcCc
Q 003888 673 NNLS 676 (788)
Q Consensus 673 N~l~ 676 (788)
|+++
T Consensus 343 N~i~ 346 (347)
T 4fmz_A 343 QVIK 346 (347)
T ss_dssp C---
T ss_pred hccc
Confidence 8765
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=8.1e-32 Score=290.37 Aligned_cols=333 Identities=23% Similarity=0.269 Sum_probs=240.4
Q ss_pred CCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCE
Q 003888 248 HRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEF 327 (788)
Q Consensus 248 ~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~ 327 (788)
+++++.++++++.++ .+|..++..+++|++|++++|.+.+..+..|.++++|++|++++|.++ .++...+..+++|++
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCE
Confidence 456777777777776 677766666778888888888887766667778888888888888877 444444446777777
Q ss_pred EEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcc
Q 003888 328 LALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHL 407 (788)
Q Consensus 328 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~ 407 (788)
|++++|+++.+....+.++++|++|++++|.+++..+..+..+++|++|++++|.+++. .+..+++|+.|++++|.+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 77777777766665566777777777777777766666677777777777777777643 244566777777777766
Q ss_pred cCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccc
Q 003888 408 EGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWV 487 (788)
Q Consensus 408 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 487 (788)
.+. ...++|++|++++|.+.. ++.. ..++|+.|++++|.+++. .++
T Consensus 199 ~~~-----~~~~~L~~L~l~~n~l~~------------------------~~~~---~~~~L~~L~l~~n~l~~~--~~l 244 (390)
T 3o6n_A 199 STL-----AIPIAVEELDASHNSINV------------------------VRGP---VNVELTILKLQHNNLTDT--AWL 244 (390)
T ss_dssp SEE-----ECCSSCSEEECCSSCCCE------------------------EECC---CCSSCCEEECCSSCCCCC--GGG
T ss_pred ccc-----CCCCcceEEECCCCeeee------------------------cccc---ccccccEEECCCCCCccc--HHH
Confidence 532 233456666666665542 1211 236889999999988853 568
Q ss_pred cCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhh
Q 003888 488 DGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAE 567 (788)
Q Consensus 488 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (788)
..+++|++|++++|.+++..|..+..+++|+.|++++|++.+. |..+.
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~------------------------------- 292 (390)
T 3o6n_A 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQ------------------------------- 292 (390)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSS-------------------------------
T ss_pred cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccC-------------------------------
Confidence 8899999999999999988888899999999999999988642 11111
Q ss_pred hccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECc
Q 003888 568 KQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLS 647 (788)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 647 (788)
.+++|+.|++++|++. .+|..+..+++|++|++++|++++.. +..+++|++|+++
T Consensus 293 ---------------------~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~ 347 (390)
T 3o6n_A 293 ---------------------PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLS 347 (390)
T ss_dssp ---------------------CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECC
T ss_pred ---------------------CCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---chhhccCCEEEcC
Confidence 1568999999999998 56778889999999999999999763 6778999999999
Q ss_pred CCcccccCCccccCCCCCCEEEccCCcCccc
Q 003888 648 YNKLNGKIPHQLVELKTLAVFSVAYNNLSGE 678 (788)
Q Consensus 648 ~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 678 (788)
+|++.+.....+ +..+....+..+...+.
T Consensus 348 ~N~~~~~~~~~~--~~~~~~~~~~~~~~~c~ 376 (390)
T 3o6n_A 348 HNDWDCNSLRAL--FRNVARPAVDDADQHCK 376 (390)
T ss_dssp SSCEEHHHHHHH--TTTCCTTTBCCCCSCCC
T ss_pred CCCccchhHHHH--HHHHHhhcccccCceec
Confidence 999987533222 22333333444544443
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.8e-31 Score=283.08 Aligned_cols=305 Identities=27% Similarity=0.355 Sum_probs=223.4
Q ss_pred CCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCC
Q 003888 247 SHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLE 326 (788)
Q Consensus 247 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~ 326 (788)
.+++|++|+++++.+. .++. ...+++|++|++++|.+++..+ +.++++|++|++++|.++ .++. +..+++|+
T Consensus 42 ~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~ 113 (347)
T 4fmz_A 42 ELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISA--LQNLTNLR 113 (347)
T ss_dssp HHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCS
T ss_pred hcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-CchH--HcCCCcCC
Confidence 3445555555555554 3332 2235677777777777664433 677777777777777776 4542 33577777
Q ss_pred EEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCc
Q 003888 327 FLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENH 406 (788)
Q Consensus 327 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 406 (788)
+|++++|.+++..+ +..+++|++|++++|..... +..+..+++|++|++++|.+.+..+ +..+++|++|++++|.
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence 77777777776543 66778888888888865533 3347888888888888888775433 7778888888888888
Q ss_pred ccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCcc
Q 003888 407 LEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNW 486 (788)
Q Consensus 407 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 486 (788)
+.+..+ +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+++..+
T Consensus 189 l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--------------------------~~~~~~L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 189 IEDISP--LASLTSLHYFTAYVNQITDITP--------------------------VANMTRLNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCCGG--------------------------GGGCTTCCEEECCSSCCCCCGG--
T ss_pred cccccc--ccCCCccceeecccCCCCCCch--------------------------hhcCCcCCEEEccCCccCCCcc--
Confidence 875433 7788888888888887763211 5567888888888888875443
Q ss_pred ccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchh
Q 003888 487 VDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPA 566 (788)
Q Consensus 487 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (788)
+..+++|++|++++|.+++. ..+..+++|+.|++++|++.+. +.+.
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~------------------------------ 284 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLN------------------------------ 284 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGG------------------------------
T ss_pred hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhc------------------------------
Confidence 77888899999999988754 4688889999999999988653 1111
Q ss_pred hhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEEC
Q 003888 567 EKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDL 646 (788)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 646 (788)
.+++|+.|++++|.+++..|..++.+++|++|++++|++++..| +..+++|++|++
T Consensus 285 ----------------------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 340 (347)
T 4fmz_A 285 ----------------------NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADF 340 (347)
T ss_dssp ----------------------GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESS
T ss_pred ----------------------CCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeeh
Confidence 15689999999999998888999999999999999999998766 888999999999
Q ss_pred cCCccc
Q 003888 647 SYNKLN 652 (788)
Q Consensus 647 s~N~l~ 652 (788)
++|+++
T Consensus 341 ~~N~i~ 346 (347)
T 4fmz_A 341 ANQVIK 346 (347)
T ss_dssp SCC---
T ss_pred hhhccc
Confidence 999986
No 40
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=7.4e-33 Score=287.91 Aligned_cols=260 Identities=35% Similarity=0.565 Sum_probs=209.2
Q ss_pred CCCCEEEccCCcCCC--CCcccccCCCCCCEEeCCC-CcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEE
Q 003888 371 SSLEGLYLNNNSLSG--KIPRWLGNLTGLKHIIMPE-NHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQV 447 (788)
Q Consensus 371 ~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L 447 (788)
.+++.|++++|.+.+ ..|..+..+++|++|++++ |.+.+..|..|..+++|++|++++|.+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-------------- 115 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-------------- 115 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE--------------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC--------------
Confidence 355666666666665 5556666666666666663 66666666666677777777777766652
Q ss_pred EccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCC-CCCEEEccCCc
Q 003888 448 HLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELN-QLQLLDLSNNN 526 (788)
Q Consensus 448 ~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~ 526 (788)
.+|.. +..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..++ +|+.|++++|+
T Consensus 116 ---------~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 116 ---------AIPDF-LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp ---------ECCGG-GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred ---------cCCHH-HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence 23332 66777888888888888877888888888888888888888878888888887 88888888888
Q ss_pred CCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCccccc
Q 003888 527 LHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGH 606 (788)
Q Consensus 527 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 606 (788)
+.+..|..+.. + .|+.|++++|.+++.
T Consensus 186 l~~~~~~~~~~----------------------------------------------------l-~L~~L~Ls~N~l~~~ 212 (313)
T 1ogq_A 186 LTGKIPPTFAN----------------------------------------------------L-NLAFVDLSRNMLEGD 212 (313)
T ss_dssp EEEECCGGGGG----------------------------------------------------C-CCSEEECCSSEEEEC
T ss_pred eeccCChHHhC----------------------------------------------------C-cccEEECcCCcccCc
Confidence 87666655443 2 388999999999989
Q ss_pred CcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCCccccc
Q 003888 607 IPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQF 686 (788)
Q Consensus 607 ~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~ 686 (788)
.|..|..+++|+.|++++|++++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|.. ..+
T Consensus 213 ~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l 290 (313)
T 1ogq_A 213 ASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL 290 (313)
T ss_dssp CGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTG
T ss_pred CCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccc
Confidence 999999999999999999999977665 888999999999999999999999999999999999999999999986 889
Q ss_pred CCCCccccCCCCCCCCCCCCCCC
Q 003888 687 ATFNESSYEGNTFLCGLPLPICR 709 (788)
Q Consensus 687 ~~~~~~~~~gn~~~c~~~l~~c~ 709 (788)
+++..+++.+|+++|+.|++.|.
T Consensus 291 ~~L~~l~l~~N~~lc~~p~~~C~ 313 (313)
T 1ogq_A 291 QRFDVSAYANNKCLCGSPLPACT 313 (313)
T ss_dssp GGSCGGGTCSSSEEESTTSSCCC
T ss_pred cccChHHhcCCCCccCCCCCCCC
Confidence 99999999999999998887773
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=5.8e-31 Score=299.29 Aligned_cols=313 Identities=23% Similarity=0.278 Sum_probs=238.5
Q ss_pred CCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCE
Q 003888 248 HRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEF 327 (788)
Q Consensus 248 ~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~ 327 (788)
+.+++.+++++|.+. .+|..++..+++|++|++++|.+.+..+..|..+++|++|++++|.++ .++...+.++++|++
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCE
Confidence 456777777777776 667766666788888888888888777777888888888888888887 455554456788888
Q ss_pred EEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcc
Q 003888 328 LALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHL 407 (788)
Q Consensus 328 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~ 407 (788)
|++++|.++++++..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++.. +..+++|+.|++++|.+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcc
Confidence 888888887766666677788888888888887777777777888888888888776442 44567777777777766
Q ss_pred cCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccc
Q 003888 408 EGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWV 487 (788)
Q Consensus 408 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 487 (788)
.+ +...++|+.|++++|.+... +.. ..++|+.|++++|.+++ +.++
T Consensus 205 ~~-----l~~~~~L~~L~ls~n~l~~~------------------------~~~---~~~~L~~L~L~~n~l~~--~~~l 250 (597)
T 3oja_B 205 ST-----LAIPIAVEELDASHNSINVV------------------------RGP---VNVELTILKLQHNNLTD--TAWL 250 (597)
T ss_dssp SE-----EECCTTCSEEECCSSCCCEE------------------------ECS---CCSCCCEEECCSSCCCC--CGGG
T ss_pred cc-----ccCCchhheeeccCCccccc------------------------ccc---cCCCCCEEECCCCCCCC--Chhh
Confidence 53 23345677777777765422 111 12578899999998885 4678
Q ss_pred cCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhh
Q 003888 488 DGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAE 567 (788)
Q Consensus 488 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (788)
..+++|+.|++++|.+++..|..|..+++|+.|++++|.+.+. |..+.
T Consensus 251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~------------------------------- 298 (597)
T 3oja_B 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQ------------------------------- 298 (597)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSSS-------------------------------
T ss_pred ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-Ccccc-------------------------------
Confidence 8899999999999999988888999999999999999988752 22211
Q ss_pred hccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECc
Q 003888 568 KQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLS 647 (788)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 647 (788)
.+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+++.. +..+++|+.|+++
T Consensus 299 ---------------------~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~ 353 (597)
T 3oja_B 299 ---------------------PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLS 353 (597)
T ss_dssp ---------------------CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECC
T ss_pred ---------------------cCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEee
Confidence 1568999999999998 67888899999999999999999763 6778999999999
Q ss_pred CCcccccCC
Q 003888 648 YNKLNGKIP 656 (788)
Q Consensus 648 ~N~l~~~~p 656 (788)
+|++.+...
T Consensus 354 ~N~~~~~~~ 362 (597)
T 3oja_B 354 HNDWDCNSL 362 (597)
T ss_dssp SSCEEHHHH
T ss_pred CCCCCChhH
Confidence 999987543
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=5.6e-30 Score=269.21 Aligned_cols=291 Identities=23% Similarity=0.311 Sum_probs=206.9
Q ss_pred CCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEc
Q 003888 299 FLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYL 378 (788)
Q Consensus 299 ~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 378 (788)
+++.++++++.++ .+|..+ .+++++|++++|+++++.+..+.++++|++|++++|.+++..|..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 4566666666665 566543 356777777777777766666777777777777777777666777777788888888
Q ss_pred cCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCccccccc
Q 003888 379 NNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQL 458 (788)
Q Consensus 379 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 458 (788)
++|.++ ..|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+... ..
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~ 162 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS----------------------GI 162 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG----------------------GB
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc----------------------Cc
Confidence 887776 3444333 6788888888888777667777888888888888776421 11
Q ss_pred CcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCc
Q 003888 459 KRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNT 538 (788)
Q Consensus 459 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~ 538 (788)
....+..+++|++|++++|.++. +|..+. ++|++|++++|++++..+..+..+++|+.|++++|++.+..+..+..
T Consensus 163 ~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~- 238 (330)
T 1xku_A 163 ENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN- 238 (330)
T ss_dssp CTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG-
T ss_pred ChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC-
Confidence 22236677788888888888774 444332 67888888888888777777888888888888888877655544433
Q ss_pred ccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCC
Q 003888 539 TLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQ 618 (788)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 618 (788)
+++|+.|++++|+++ .+|..+..+++|+
T Consensus 239 ---------------------------------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~ 266 (330)
T 1xku_A 239 ---------------------------------------------------TPHLRELHLNNNKLV-KVPGGLADHKYIQ 266 (330)
T ss_dssp ---------------------------------------------------STTCCEEECCSSCCS-SCCTTTTTCSSCC
T ss_pred ---------------------------------------------------CCCCCEEECCCCcCc-cCChhhccCCCcC
Confidence 347888888888887 6677788888888
Q ss_pred eEeCCCCcCCccCCccccCC------CCCCEEECcCCcccc--cCCccccCCCCCCEEEccCCc
Q 003888 619 TLNLSHNNLTGLIPSTFSNL------KHIESLDLSYNKLNG--KIPHQLVELKTLAVFSVAYNN 674 (788)
Q Consensus 619 ~L~Ls~N~l~~~~~~~~~~l------~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~l~~N~ 674 (788)
+|++++|+++++.+..|... ++|+.|++++|++.. ..|..|..+.+++.+++++|+
T Consensus 267 ~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 267 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp EEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred EEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 88888888888777777543 678888888888763 556777788888888888874
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3.4e-30 Score=271.00 Aligned_cols=290 Identities=22% Similarity=0.301 Sum_probs=197.0
Q ss_pred CCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEc
Q 003888 299 FLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYL 378 (788)
Q Consensus 299 ~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 378 (788)
+++.++++++.++ .+|..+ .++|++|++++|.++++.+..+.++++|++|++++|.+++..|..+.++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4667777777776 666554 356777777777777766667777777777777777777666777777777888888
Q ss_pred cCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCccccccc
Q 003888 379 NNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQL 458 (788)
Q Consensus 379 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 458 (788)
++|.++ .+|..+. ++|++|++++|.+....+..|..+++|++|++++|.++.. ..
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~ 164 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS----------------------GF 164 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG----------------------GS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC----------------------CC
Confidence 777776 3443333 6777778877777766666677777777777777776421 01
Q ss_pred CcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCc
Q 003888 459 KRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNT 538 (788)
Q Consensus 459 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~ 538 (788)
....+..+ +|+.|++++|++++ +|..+. ++|++|++++|.+++..+..+..+++|+.|++++|++.+..+..+..
T Consensus 165 ~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~- 239 (332)
T 2ft3_A 165 EPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF- 239 (332)
T ss_dssp CTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG-
T ss_pred CcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC-
Confidence 11124444 66677777777664 333332 56777777777777666667777777777777777776655544433
Q ss_pred ccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCC
Q 003888 539 TLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQ 618 (788)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 618 (788)
+++|+.|++++|+++ .+|..+..+++|+
T Consensus 240 ---------------------------------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~ 267 (332)
T 2ft3_A 240 ---------------------------------------------------LPTLRELHLDNNKLS-RVPAGLPDLKLLQ 267 (332)
T ss_dssp ---------------------------------------------------CTTCCEEECCSSCCC-BCCTTGGGCTTCC
T ss_pred ---------------------------------------------------CCCCCEEECCCCcCe-ecChhhhcCccCC
Confidence 346777777777777 5666777788888
Q ss_pred eEeCCCCcCCccCCccccCC------CCCCEEECcCCccc--ccCCccccCCCCCCEEEccCCc
Q 003888 619 TLNLSHNNLTGLIPSTFSNL------KHIESLDLSYNKLN--GKIPHQLVELKTLAVFSVAYNN 674 (788)
Q Consensus 619 ~L~Ls~N~l~~~~~~~~~~l------~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~l~~N~ 674 (788)
.|++++|+++++.+..|... ++|+.|++++|++. +..|..|..+++|+.+++++|+
T Consensus 268 ~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 268 VVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp EEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred EEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 88888888887776666553 56788888888776 5666777778888888887774
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=8.6e-34 Score=313.67 Aligned_cols=363 Identities=19% Similarity=0.151 Sum_probs=237.2
Q ss_pred CCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCC----CCcccccCCCCCCEEEcccCcCCCccchHHHhcCC-
Q 003888 249 RWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDS----SIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCV- 323 (788)
Q Consensus 249 ~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~----~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~- 323 (788)
++|++|++++|.+++.....++..+++|++|++++|.++. .++..+..+++|++|++++|.+.+..+..++..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4678888888888754444545667899999999998874 34566788899999999999887555556665566
Q ss_pred ---CCCEEEccCccCCC----cCcccCcCCCCCCEEeccCCcCCCcCCccc-----cCCCCCCEEEccCCcCCCCC----
Q 003888 324 ---NLEFLALSNNNLKG----HMFSRNFNLTNLRSLQLEGNHLEGEIPQSL-----SKCSSLEGLYLNNNSLSGKI---- 387 (788)
Q Consensus 324 ---~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~i~~~~---- 387 (788)
+|++|++++|+++. ..+..+..+++|++|++++|.+++..+..+ ...++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 68888888888875 335667788888888888888764333322 23567888888888877543
Q ss_pred cccccCCCCCCEEeCCCCcccCCcccccc-----CCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCccc
Q 003888 388 PRWLGNLTGLKHIIMPENHLEGPIPVGFC-----QLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGT 462 (788)
Q Consensus 388 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 462 (788)
+..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++.... .++. .
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-------------------~l~~-~ 222 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR-------------------DLCG-I 222 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH-------------------HHHH-H
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH-------------------HHHH-H
Confidence 44555678888888888887654443332 255788888888776532100 1121 1
Q ss_pred ccCCCCCcEEEccCCcCCCCC-----CccccCCCCCCEEEccCCcCccc----cCcccCCCCCCCEEEccCCcCCCCCCC
Q 003888 463 FFHCSSLVTLDLSYNRLNGSI-----PNWVDGLSQLSHLILGHNNLEGE----VPVQLCELNQLQLLDLSNNNLHGPIPP 533 (788)
Q Consensus 463 ~~~~~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~i~~~~~~ 533 (788)
+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++. ++..+..+++|+.|++++|++.+..+.
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 455677777777777665432 22233467777777777777643 345566677777777777765421111
Q ss_pred CCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCccccc----Ccc
Q 003888 534 CFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGH----IPP 609 (788)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~ 609 (788)
.+...- ....++|+.|++++|.+++. ++.
T Consensus 303 ~l~~~l-----------------------------------------------~~~~~~L~~L~L~~n~l~~~~~~~l~~ 335 (461)
T 1z7x_W 303 LLCETL-----------------------------------------------LEPGCQLESLWVKSCSFTAACCSHFSS 335 (461)
T ss_dssp HHHHHH-----------------------------------------------TSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred HHHHHh-----------------------------------------------ccCCccceeeEcCCCCCchHHHHHHHH
Confidence 110000 00123677777777777654 345
Q ss_pred cccCcccCCeEeCCCCcCCccCCccccC-----CCCCCEEECcCCcccc----cCCccccCCCCCCEEEccCCcCccc
Q 003888 610 QIGNLTRIQTLNLSHNNLTGLIPSTFSN-----LKHIESLDLSYNKLNG----KIPHQLVELKTLAVFSVAYNNLSGE 678 (788)
Q Consensus 610 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~l~~N~l~~~ 678 (788)
.+..+++|++|++++|++++..+..+.. .++|++|++++|++++ .+|..+..+++|++|++++|++++.
T Consensus 336 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 336 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 5666677788888877777654433332 5677888888887775 5666777777788888888877643
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.5e-29 Score=266.15 Aligned_cols=288 Identities=21% Similarity=0.254 Sum_probs=193.4
Q ss_pred CCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEcc
Q 003888 348 NLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDIS 427 (788)
Q Consensus 348 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 427 (788)
+++.++++++.++ .+|..+. ++++.|++++|.+.+..+..|.++++|++|++++|.+.+..|..|..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4555555555555 3343332 455666666666554445555666666666666666655555556666666666666
Q ss_pred CCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCC--CCCccccCCCCCCEEEccCCcCcc
Q 003888 428 DNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNG--SIPNWVDGLSQLSHLILGHNNLEG 505 (788)
Q Consensus 428 ~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~ 505 (788)
+|.++......+ .+|++|++++|.+. .++...|..+++|++|++++|.++. ..+..+..+ +|++|++++|++++
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCCccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 666553333222 45555555555553 3444447788888888888888853 566677777 88888888888885
Q ss_pred ccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeee
Q 003888 506 EVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIY 585 (788)
Q Consensus 506 ~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (788)
+|..+. ++|+.|++++|++.+..+..+..
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~------------------------------------------------ 215 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLR------------------------------------------------ 215 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTT------------------------------------------------
T ss_pred -cCcccc--CCCCEEECCCCcCCccCHHHhcC------------------------------------------------
Confidence 444433 68888888888887766665554
Q ss_pred cccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCC---
Q 003888 586 QGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL--- 662 (788)
Q Consensus 586 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l--- 662 (788)
+++|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|...
T Consensus 216 ----l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~ 290 (332)
T 2ft3_A 216 ----YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFG 290 (332)
T ss_dssp ----CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCC
T ss_pred ----CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccc
Confidence 347888888888888777778888888888888888888 456678888888888888888887666666543
Q ss_pred ---CCCCEEEccCCcCc--ccCCCcccccCCCCccccCCCC
Q 003888 663 ---KTLAVFSVAYNNLS--GEIPEWTAQFATFNESSYEGNT 698 (788)
Q Consensus 663 ---~~L~~L~l~~N~l~--~~~p~~~~~~~~~~~~~~~gn~ 698 (788)
+.|+.+++++|++. +..|..+..+..+..+++.+|.
T Consensus 291 ~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 291 VKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 56888888888887 5666666777777777777764
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=3.6e-29 Score=263.05 Aligned_cols=288 Identities=20% Similarity=0.256 Sum_probs=163.9
Q ss_pred CCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEcc
Q 003888 348 NLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDIS 427 (788)
Q Consensus 348 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 427 (788)
+++.++++++.++ .+|..+. +.++.|++++|.+++..+..|..+++|++|++++|.+.+..|..|..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 4555555555554 3333332 355556666665555444455556666666666666655555556666666666666
Q ss_pred CCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCC--CCCccccCCCCCCEEEccCCcCcc
Q 003888 428 DNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNG--SIPNWVDGLSQLSHLILGHNNLEG 505 (788)
Q Consensus 428 ~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~ 505 (788)
+|.++......+ .+|+.|++++|.+. .++...+..+++|+.|++++|.++. ..+..+.++++|++|++++|.++.
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCCccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 665553222211 34444444444442 2333336666777777777776643 455566667777777777777663
Q ss_pred ccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeee
Q 003888 506 EVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIY 585 (788)
Q Consensus 506 ~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (788)
+|..+. ++|+.|++++|++.+..+..+..
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~------------------------------------------------ 214 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKITKVDAASLKG------------------------------------------------ 214 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCCEECTGGGTT------------------------------------------------
T ss_pred -CCcccc--ccCCEEECCCCcCCccCHHHhcC------------------------------------------------
Confidence 333332 56777777777666544444333
Q ss_pred cccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccC----
Q 003888 586 QGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE---- 661 (788)
Q Consensus 586 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~---- 661 (788)
+++|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|..
T Consensus 215 ----l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~ 289 (330)
T 1xku_A 215 ----LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN 289 (330)
T ss_dssp ----CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCC
T ss_pred ----CCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccc
Confidence 336677777777776666666666777777777777766 34556666677777777777776555555533
Q ss_pred --CCCCCEEEccCCcCcc--cCCCcccccCCCCccccCCC
Q 003888 662 --LKTLAVFSVAYNNLSG--EIPEWTAQFATFNESSYEGN 697 (788)
Q Consensus 662 --l~~L~~L~l~~N~l~~--~~p~~~~~~~~~~~~~~~gn 697 (788)
.+.++.+++++|++.. ..|..+..+..+..+++++|
T Consensus 290 ~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 290 TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp TTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 2566667777776653 33444444555555555554
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2e-33 Score=310.79 Aligned_cols=308 Identities=19% Similarity=0.131 Sum_probs=182.8
Q ss_pred CCCCEEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCccccc----CccCcCCCCCccEEEcccCcCcccCChhhhhcCC-
Q 003888 200 HDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGP----FRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILP- 274 (788)
Q Consensus 200 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~----~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~l~- 274 (788)
++|++|+++++.+.......++..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..++..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 56788888888877655555567888999999999988753 3556777889999999999887655656666565
Q ss_pred ---CCcEEEcccCcCCC----CCcccccCCCCCCEEEcccCcCCCccchHHHh----cCCCCCEEEccCccCCCcC----
Q 003888 275 ---SLISFNISMNALDS----SIPSSFGNMNFLQILDLSNNQLTGEIPEHLAV----SCVNLEFLALSNNNLKGHM---- 339 (788)
Q Consensus 275 ---~L~~L~L~~n~~~~----~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~----~l~~L~~L~L~~n~i~~~~---- 339 (788)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+.. ..++|++|++++|+++...
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 69999999998874 44777888999999999999887444443332 2446777777777776533
Q ss_pred cccCcCCCCCCEEeccCCcCCCcCCcccc-----CCCCCCEEEccCCcCCCC----CcccccCCCCCCEEeCCCCcccCC
Q 003888 340 FSRNFNLTNLRSLQLEGNHLEGEIPQSLS-----KCSSLEGLYLNNNSLSGK----IPRWLGNLTGLKHIIMPENHLEGP 410 (788)
Q Consensus 340 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~~~~~ 410 (788)
+..+..+++|++|++++|.++...+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.+.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 23334456677777776666543222222 244666666666666543 234444555666666666555432
Q ss_pred cc-----ccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCc
Q 003888 411 IP-----VGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPN 485 (788)
Q Consensus 411 ~~-----~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 485 (788)
.. ..+..+++|++|++++|.+++... ..++.. +..+++|++|++++|.+++..+.
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~-------------------~~l~~~-l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGC-------------------GDLCRV-LRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHH-------------------HHHHHH-HHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHH-------------------HHHHHH-HhhCCCcceEECCCCCCchHHHH
Confidence 11 111234455555555554431100 001111 34455566666666655432222
Q ss_pred ccc-----CCCCCCEEEccCCcCccc----cCcccCCCCCCCEEEccCCcC
Q 003888 486 WVD-----GLSQLSHLILGHNNLEGE----VPVQLCELNQLQLLDLSNNNL 527 (788)
Q Consensus 486 ~~~-----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~i 527 (788)
.+. ..++|++|++++|.+++. ++..+..+++|+.|++++|++
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 353 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL 353 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBC
T ss_pred HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcc
Confidence 221 124555555555555533 233344445555555555544
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1.1e-30 Score=271.51 Aligned_cols=251 Identities=31% Similarity=0.490 Sum_probs=174.6
Q ss_pred CCCCEEeccCCcCCC--cCCccccCCCCCCEEEccC-CcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccE
Q 003888 347 TNLRSLQLEGNHLEG--EIPQSLSKCSSLEGLYLNN-NSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQI 423 (788)
Q Consensus 347 ~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 423 (788)
.+++.|++++|.+++ .+|..+.++++|++|++++ |.+.+..|..|..+++|++|++++|.+.+..|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 456667777777666 5666677777777777773 6666666666777777777777777776666666777777777
Q ss_pred EEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCC-CCCEEEccCCc
Q 003888 424 LDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLS-QLSHLILGHNN 502 (788)
Q Consensus 424 L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~ 502 (788)
|++++|.+++..+ .. +..+++|++|++++|++++..|..+..++ +|++|++++|+
T Consensus 130 L~Ls~N~l~~~~p-----------------------~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 130 LDFSYNALSGTLP-----------------------PS-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp EECCSSEEESCCC-----------------------GG-GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred EeCCCCccCCcCC-----------------------hH-HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence 7777776653322 21 45556666666666666666666666665 67777777777
Q ss_pred CccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccce
Q 003888 503 LEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIA 582 (788)
Q Consensus 503 l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (788)
+++..|..+..++ |+.|++++|++.+..|..+..
T Consensus 186 l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~--------------------------------------------- 219 (313)
T 1ogq_A 186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGS--------------------------------------------- 219 (313)
T ss_dssp EEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCT---------------------------------------------
T ss_pred eeccCChHHhCCc-ccEEECcCCcccCcCCHHHhc---------------------------------------------
Confidence 7666666666665 777777777766555544433
Q ss_pred eeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCC
Q 003888 583 YIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL 662 (788)
Q Consensus 583 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 662 (788)
+++|+.|++++|.+++..|. +..+++|++|++++|++++.+|..|..+++|++|++++|++++.+|.. ..+
T Consensus 220 -------l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l 290 (313)
T 1ogq_A 220 -------DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL 290 (313)
T ss_dssp -------TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTG
T ss_pred -------CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccc
Confidence 34677777777777655554 677788888888888888778888888888888888888888878776 777
Q ss_pred CCCCEEEccCCcCc
Q 003888 663 KTLAVFSVAYNNLS 676 (788)
Q Consensus 663 ~~L~~L~l~~N~l~ 676 (788)
++|+.+++++|+..
T Consensus 291 ~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 291 QRFDVSAYANNKCL 304 (313)
T ss_dssp GGSCGGGTCSSSEE
T ss_pred cccChHHhcCCCCc
Confidence 88888888888743
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=2.5e-28 Score=267.15 Aligned_cols=252 Identities=23% Similarity=0.253 Sum_probs=201.9
Q ss_pred CCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEcc
Q 003888 348 NLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDIS 427 (788)
Q Consensus 348 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 427 (788)
..+.++.++..++ .+|..+. ++++.|++++|.+....+..|.++++|++|++++|.+....+..|.++++|++|+++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 4567888888887 5666554 578889999998887777888888889999998888887777888888888888888
Q ss_pred CCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCC-cCccc
Q 003888 428 DNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHN-NLEGE 506 (788)
Q Consensus 428 ~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~ 506 (788)
+|.++.. +...|..+++|++|++++|.++...+..|..+++|++|++++| .+...
T Consensus 121 ~n~l~~~------------------------~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i 176 (440)
T 3zyj_A 121 DNRLTTI------------------------PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI 176 (440)
T ss_dssp SSCCSSC------------------------CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred CCcCCee------------------------CHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCccee
Confidence 8877633 3333677889999999999998777778888999999999884 45555
Q ss_pred cCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeec
Q 003888 507 VPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQ 586 (788)
Q Consensus 507 ~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (788)
.+..|.++++|+.|++++|++... |. +..
T Consensus 177 ~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~------------------------------------------------- 205 (440)
T 3zyj_A 177 SEGAFEGLSNLRYLNLAMCNLREI-PN-LTP------------------------------------------------- 205 (440)
T ss_dssp CTTTTTTCSSCCEEECTTSCCSSC-CC-CTT-------------------------------------------------
T ss_pred CcchhhcccccCeecCCCCcCccc-cc-cCC-------------------------------------------------
Confidence 556788899999999999988633 21 111
Q ss_pred ccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCC
Q 003888 587 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLA 666 (788)
Q Consensus 587 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 666 (788)
+++|+.|+|++|++++..|..|.++++|+.|+|++|+++++.+..|.++++|++|+|++|++++..+..|..+++|+
T Consensus 206 ---l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 206 ---LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282 (440)
T ss_dssp ---CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred ---CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence 45788888888888888888888888888888888888888888888888888888888888877777788888888
Q ss_pred EEEccCCcCcccCC
Q 003888 667 VFSVAYNNLSGEIP 680 (788)
Q Consensus 667 ~L~l~~N~l~~~~p 680 (788)
.|++++|++.|...
T Consensus 283 ~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 283 RIHLHHNPWNCNCD 296 (440)
T ss_dssp EEECCSSCEECSST
T ss_pred EEEcCCCCccCCCC
Confidence 88888888877543
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=4.4e-28 Score=266.22 Aligned_cols=252 Identities=21% Similarity=0.228 Sum_probs=204.8
Q ss_pred CCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEcc
Q 003888 348 NLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDIS 427 (788)
Q Consensus 348 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 427 (788)
....++.++..++ .+|..+. ++++.|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|+++
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 3567788887777 5665544 578888888888887777888888888888888888887777788888888888888
Q ss_pred CCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccC-CcCccc
Q 003888 428 DNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGH-NNLEGE 506 (788)
Q Consensus 428 ~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~ 506 (788)
+|.++. ++...|..+++|++|++++|+++...+..|..+++|++|++++ +.+...
T Consensus 132 ~n~l~~------------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i 187 (452)
T 3zyi_A 132 DNWLTV------------------------IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI 187 (452)
T ss_dssp SSCCSB------------------------CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred CCcCCc------------------------cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcccc
Confidence 887763 3333477788999999999999877777888999999999998 455555
Q ss_pred cCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeec
Q 003888 507 VPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQ 586 (788)
Q Consensus 507 ~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (788)
.+..|.++++|+.|++++|++.+. | .+..
T Consensus 188 ~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~------------------------------------------------- 216 (452)
T 3zyi_A 188 SEGAFEGLFNLKYLNLGMCNIKDM-P-NLTP------------------------------------------------- 216 (452)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSSC-C-CCTT-------------------------------------------------
T ss_pred ChhhccCCCCCCEEECCCCccccc-c-cccc-------------------------------------------------
Confidence 566788999999999999988743 2 1111
Q ss_pred ccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCC
Q 003888 587 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLA 666 (788)
Q Consensus 587 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 666 (788)
+++|+.|+|++|.+++..|..|.++++|+.|+|++|+++++.+..|.++++|++|+|++|++++..+..+..+++|+
T Consensus 217 ---l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 293 (452)
T 3zyi_A 217 ---LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293 (452)
T ss_dssp ---CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred ---cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence 45889999999999988888999999999999999999988888899999999999999999877777888889999
Q ss_pred EEEccCCcCcccCC
Q 003888 667 VFSVAYNNLSGEIP 680 (788)
Q Consensus 667 ~L~l~~N~l~~~~p 680 (788)
.|++++|++.|...
T Consensus 294 ~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 294 ELHLHHNPWNCDCD 307 (452)
T ss_dssp EEECCSSCEECSTT
T ss_pred EEEccCCCcCCCCC
Confidence 99999998887654
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=2.1e-28 Score=254.26 Aligned_cols=285 Identities=22% Similarity=0.277 Sum_probs=215.2
Q ss_pred CEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCC--ccccccCCCCccEEEcc
Q 003888 350 RSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGP--IPVGFCQLYSLQILDIS 427 (788)
Q Consensus 350 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~ 427 (788)
+.++.+++.++ .+|..+. ++|++|++++|.++...+..|..+++|++|++++|.+... .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 57788888887 5565443 5888889988888865555678888888888888887743 25566677888888888
Q ss_pred CCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCC-ccccCCCCCCEEEccCCcCccc
Q 003888 428 DNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIP-NWVDGLSQLSHLILGHNNLEGE 506 (788)
Q Consensus 428 ~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~ 506 (788)
+|.+. .++.. +..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+.
T Consensus 87 ~n~i~------------------------~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 141 (306)
T 2z66_A 87 FNGVI------------------------TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 141 (306)
T ss_dssp SCSEE------------------------EEEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred CCccc------------------------cChhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc
Confidence 88664 22222 6778899999999999886654 5788899999999999999888
Q ss_pred cCcccCCCCCCCEEEccCCcCCC-CCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeee
Q 003888 507 VPVQLCELNQLQLLDLSNNNLHG-PIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIY 585 (788)
Q Consensus 507 ~~~~l~~l~~L~~L~Ls~n~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (788)
.+..+..+++|++|++++|.+.+ ..|..+..
T Consensus 142 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~------------------------------------------------ 173 (306)
T 2z66_A 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE------------------------------------------------ 173 (306)
T ss_dssp STTTTTTCTTCCEEECTTCEEGGGEECSCCTT------------------------------------------------
T ss_pred chhhcccCcCCCEEECCCCccccccchhHHhh------------------------------------------------
Confidence 88888899999999999998875 34444443
Q ss_pred cccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCC-C
Q 003888 586 QGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELK-T 664 (788)
Q Consensus 586 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~ 664 (788)
+++|+.|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..++ +
T Consensus 174 ----l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~ 249 (306)
T 2z66_A 174 ----LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 249 (306)
T ss_dssp ----CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTT
T ss_pred ----CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhcc
Confidence 45899999999999888888899999999999999999988777888899999999999999988888888884 8
Q ss_pred CCEEEccCCcCcccCCC-ccccc-CCCCccccCCCCCCCCCCCCCCCCCCCCCcccCCC
Q 003888 665 LAVFSVAYNNLSGEIPE-WTAQF-ATFNESSYEGNTFLCGLPLPICRSPATMSEASIGN 721 (788)
Q Consensus 665 L~~L~l~~N~l~~~~p~-~~~~~-~~~~~~~~~gn~~~c~~~l~~c~~~~~~~~~~~~~ 721 (788)
|++|++++|+++|..+. ++.+| ..........+.. .|..|....+.++..
T Consensus 250 L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~-------~C~~p~~~~g~~~~~ 301 (306)
T 2z66_A 250 LAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERM-------ECATPSDKQGMPVLS 301 (306)
T ss_dssp CCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGC-------BEEESGGGTTCBGGG
T ss_pred CCEEEccCCCeecccChHHHHHHHHhhhhhhcccccc-------ccCCchhhCCceeee
Confidence 99999999999875431 11111 1222233333333 466666666654433
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.2e-28 Score=259.62 Aligned_cols=208 Identities=25% Similarity=0.254 Sum_probs=146.7
Q ss_pred CCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEE
Q 003888 297 MNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGL 376 (788)
Q Consensus 297 l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 376 (788)
++.....+.+++.++ .+|..+. ++|++|++++|+++++.+..+.++++|++|++++|.+++..+..|.++++|++|
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 444455677777776 6776543 477777887777777666677777888888888887776666777777888888
Q ss_pred EccCCcCCCCCcccccCCCCCCEEeCCCCcccCCcc-ccccCCCCccEEEccCCc-CCCCCCCCCCCCCccEEEccCccc
Q 003888 377 YLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIP-VGFCQLYSLQILDISDNN-ISGSLPSCFHPLSIEQVHLSKNML 454 (788)
Q Consensus 377 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~L~~L~l~~n~~ 454 (788)
++++|.+++..+..|..+++|++|++++|.+....+ ..+..+++|++|++++|. +.
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~---------------------- 163 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT---------------------- 163 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC----------------------
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc----------------------
Confidence 888887775555557777777777777777775433 356677777777777763 32
Q ss_pred ccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCC
Q 003888 455 HGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIP 532 (788)
Q Consensus 455 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~ 532 (788)
.++...+..+++|++|++++|++++..|..+..+++|++|++++|.++......+..+++|+.|++++|++.+..+
T Consensus 164 --~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 239 (353)
T 2z80_A 164 --KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF 239 (353)
T ss_dssp --EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCC
T ss_pred --ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccc
Confidence 2333336677788888888888877777778888888888888888764444445557788888888887765443
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=5e-28 Score=256.79 Aligned_cols=280 Identities=19% Similarity=0.206 Sum_probs=211.8
Q ss_pred cCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEE
Q 003888 321 SCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHI 400 (788)
Q Consensus 321 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 400 (788)
.|+.....+.+++.++.++. .+. ++|++|++++|.+++..+..+.++++|++|++++|.+++..+..|.++++|++|
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~-~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPS-GLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp EECTTSEEECCSTTCSSCCT-TCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCeEeeCCCCCcccccc-ccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 35666677888888877543 222 578888888888886666678888888888888888887667778888888888
Q ss_pred eCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCc-ccccCCCCCcEEEccCC-c
Q 003888 401 IMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKR-GTFFHCSSLVTLDLSYN-R 478 (788)
Q Consensus 401 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~L~~n-~ 478 (788)
++++|.+++..+..+..+++|++|++++|.+++. +. ..+..+++|++|++++| .
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l------------------------~~~~~~~~l~~L~~L~l~~n~~ 161 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTL------------------------GETSLFSHLTKLQILRVGNMDT 161 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSS------------------------CSSCSCTTCTTCCEEEEEESSS
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCccc------------------------CchhhhccCCCCcEEECCCCcc
Confidence 8888888866665678888888888888877632 22 23778899999999998 4
Q ss_pred CCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccc
Q 003888 479 LNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLV 558 (788)
Q Consensus 479 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (788)
+.+..+..+.++++|++|++++|.+++..|..+..+++|++|++++|++....+..+
T Consensus 162 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~----------------------- 218 (353)
T 2z80_A 162 FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFV----------------------- 218 (353)
T ss_dssp CCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHH-----------------------
T ss_pred ccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhh-----------------------
Confidence 666667788889999999999999998888889999999999999998742111100
Q ss_pred cccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCccccc---CcccCCeEeCCCCcCCcc----C
Q 003888 559 MDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIG---NLTRIQTLNLSHNNLTGL----I 631 (788)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~---~l~~L~~L~Ls~N~l~~~----~ 631 (788)
..+++|+.|++++|.+++..+..+. ..+.++.++++++.+++. +
T Consensus 219 -----------------------------~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l 269 (353)
T 2z80_A 219 -----------------------------DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV 269 (353)
T ss_dssp -----------------------------HHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred -----------------------------hhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence 1145889999999998876554443 356778888888887752 4
Q ss_pred CccccCCCCCCEEECcCCcccccCCcc-ccCCCCCCEEEccCCcCcccCC
Q 003888 632 PSTFSNLKHIESLDLSYNKLNGKIPHQ-LVELKTLAVFSVAYNNLSGEIP 680 (788)
Q Consensus 632 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~l~~N~l~~~~p 680 (788)
|+.+..+++|++|++++|+++ .+|.. |..+++|++|++++|+++|.+|
T Consensus 270 ~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 270 MKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred HHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 667788888999999999888 44544 5788889999999998888766
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.2e-27 Score=248.73 Aligned_cols=282 Identities=23% Similarity=0.234 Sum_probs=232.0
Q ss_pred CCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCC--cccccCCCCCCEEeC
Q 003888 325 LEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKI--PRWLGNLTGLKHIIM 402 (788)
Q Consensus 325 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~l 402 (788)
-+.++.+++.++.++.. + .++|++|++++|.++...+..|.++++|++|++++|.++... +..+..+++|++|++
T Consensus 9 ~~~l~c~~~~l~~ip~~-~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPTG-I--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TTEEECCSSCCSSCCSC-C--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CCEEEcCCCCcccCCCC-C--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 35788999888876543 2 368999999999999666666899999999999999987432 566778999999999
Q ss_pred CCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCC
Q 003888 403 PENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGS 482 (788)
Q Consensus 403 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 482 (788)
++|.+. ..+..+..+++|++|++++|.+++..+ ...+..+++|++|++++|.+.+.
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~-----------------------~~~~~~l~~L~~L~l~~n~l~~~ 141 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSE-----------------------FSVFLSLRNLIYLDISHTHTRVA 141 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTT-----------------------TTTTTTCTTCCEEECTTSCCEEC
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCccccccc-----------------------chhhhhccCCCEEECCCCcCCcc
Confidence 999998 466678899999999999998864322 12367788999999999999888
Q ss_pred CCccccCCCCCCEEEccCCcCcc-ccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCccccccccc
Q 003888 483 IPNWVDGLSQLSHLILGHNNLEG-EVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDS 561 (788)
Q Consensus 483 ~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (788)
.+..+..+++|++|++++|.+++ ..|..+..+++|+.|++++|++.+..|..+..
T Consensus 142 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------------------------ 197 (306)
T 2z66_A 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS------------------------ 197 (306)
T ss_dssp STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT------------------------
T ss_pred chhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcC------------------------
Confidence 88889999999999999999986 57888999999999999999998776666654
Q ss_pred ccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCC-C
Q 003888 562 MMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLK-H 640 (788)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~ 640 (788)
+++|+.|++++|.+++..+..+..+++|+.|++++|++++..|..+..++ +
T Consensus 198 ----------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~ 249 (306)
T 2z66_A 198 ----------------------------LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 249 (306)
T ss_dssp ----------------------------CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTT
T ss_pred ----------------------------CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhcc
Confidence 45899999999999988888899999999999999999999999999984 9
Q ss_pred CCEEECcCCcccccCCc--cccCCCCCCEEEccCCcCcccCCCcccc
Q 003888 641 IESLDLSYNKLNGKIPH--QLVELKTLAVFSVAYNNLSGEIPEWTAQ 685 (788)
Q Consensus 641 L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~l~~N~l~~~~p~~~~~ 685 (788)
|++|++++|++++..+. ...-+...+.+.+..+++.|..|..+..
T Consensus 250 L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g 296 (306)
T 2z66_A 250 LAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG 296 (306)
T ss_dssp CCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred CCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCC
Confidence 99999999999875431 1222344555667788899888876543
No 55
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=2.7e-29 Score=286.99 Aligned_cols=432 Identities=13% Similarity=0.081 Sum_probs=254.3
Q ss_pred HHHhhcCCCCcEEeCCCCCCCCCCCCCCc-----------ccccCCCCCCEEEcCCCCCCcCCChhhcCC-C-CCCEEEC
Q 003888 39 QIIRESMPSLKYLSMSDSTLGTNSSRILD-----------QGLCSLMHLQELYIDNNDLRGSLPWCLANM-T-SLRILDV 105 (788)
Q Consensus 39 ~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~-----------~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l-~-~L~~L~L 105 (788)
..+. ++++|++|+++++......+.+|. .....+++|++|+|++|.+++..+..+... + +|++|++
T Consensus 67 ~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 67 RLSR-RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp HHHH-HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred HHHH-hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence 3444 888899999987542111122221 011267889999999888877666666653 3 4999999
Q ss_pred CCCc-CcC-cCChhhhcCCCCCCEEECcCccccccCC---ccccccCCCCcEEEccCccccccccccccCCCCcccccEE
Q 003888 106 SSNQ-LTG-SISSSPLVHLTSIEELMLSNNHFQIPIS---LEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQAL 180 (788)
Q Consensus 106 s~n~-~~~-~i~~~~l~~l~~L~~L~Ls~n~l~~~~~---~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L 180 (788)
++|. ++. .++. ...++++|++|++++|.+.+... .....++++|++|++++|.+.+..
T Consensus 146 ~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~---------------- 208 (592)
T 3ogk_B 146 DKCSGFTTDGLLS-IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKIS---------------- 208 (592)
T ss_dssp ESCEEEEHHHHHH-HHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCC----------------
T ss_pred cCCCCcCHHHHHH-HHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccC----------------
Confidence 8886 221 1222 34578889999999888764311 123456788888888877654210
Q ss_pred EccCCCCCCCCcCccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCccc---ccCccCcCCCCCccEEEcc
Q 003888 181 SLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLT---GPFRLPIHSHRWLRFLDVS 257 (788)
Q Consensus 181 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~---~~~~~~l~~~~~L~~L~L~ 257 (788)
...++..+..+++|+.|++++|.+.+ ++.. +..+++|++|+++..... ......+..+++|+.++++
T Consensus 209 --------~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 278 (592)
T 3ogk_B 209 --------PKDLETIARNCRSLVSVKVGDFEILE-LVGF-FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLS 278 (592)
T ss_dssp --------HHHHHHHHHHCTTCCEEECSSCBGGG-GHHH-HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEET
T ss_pred --------HHHHHHHHhhCCCCcEEeccCccHHH-HHHH-HhhhhHHHhhcccccccccchHHHHHHhhccccccccCcc
Confidence 01234455678889999999988766 5544 478899999999753322 2344566778888888888
Q ss_pred cCcCcccCChhhhhcCCCCcEEEcccCcCCCCCc-ccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccC----
Q 003888 258 NNNFQGHIPVEIGDILPSLISFNISMNALDSSIP-SSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSN---- 332 (788)
Q Consensus 258 ~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~---- 332 (788)
++... .+|..+ ..+++|++|++++|.+++... ..+.++++|++|+++ +.+.+.....+...+++|++|++++
T Consensus 279 ~~~~~-~l~~~~-~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~ 355 (592)
T 3ogk_B 279 YMGPN-EMPILF-PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADE 355 (592)
T ss_dssp TCCTT-TGGGGG-GGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCS
T ss_pred ccchh-HHHHHH-hhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccc
Confidence 76432 444433 346788999998888664433 335788888888888 4444344444445688888888883
Q ss_pred -------ccCCCcCccc-CcCCCCCCEEeccCCcCCCcCCccccC-CCCCCEEEcc----CCcCCCC-----CcccccCC
Q 003888 333 -------NNLKGHMFSR-NFNLTNLRSLQLEGNHLEGEIPQSLSK-CSSLEGLYLN----NNSLSGK-----IPRWLGNL 394 (788)
Q Consensus 333 -------n~i~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~L~----~n~i~~~-----~~~~~~~l 394 (788)
+.++...... ...+++|++|+++.+.+++..+..+.. +++|++|+++ .|.+++. .+..+.++
T Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~ 435 (592)
T 3ogk_B 356 QGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC 435 (592)
T ss_dssp STTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHC
T ss_pred cccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhC
Confidence 4555432222 234677777777777776555545544 6777777775 4445432 11223445
Q ss_pred CCCCEEeCCCCc--ccCCcccccc-CCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcE
Q 003888 395 TGLKHIIMPENH--LEGPIPVGFC-QLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVT 471 (788)
Q Consensus 395 ~~L~~L~l~~n~--~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 471 (788)
++|++|+++.|. +++.....+. .+++|++|++++|.++ +......+..+++|++
T Consensus 436 ~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~-----------------------~~~~~~~~~~~~~L~~ 492 (592)
T 3ogk_B 436 KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES-----------------------DEGLMEFSRGCPNLQK 492 (592)
T ss_dssp TTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSS-----------------------HHHHHHHHTCCTTCCE
T ss_pred CCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCC-----------------------HHHHHHHHhcCcccCe
Confidence 566666664432 3322222222 2455555555555443 1111111345566666
Q ss_pred EEccCCcCCCC-CCccccCCCCCCEEEccCCcCccccCccc-CCCCCCCEEEccC
Q 003888 472 LDLSYNRLNGS-IPNWVDGLSQLSHLILGHNNLEGEVPVQL-CELNQLQLLDLSN 524 (788)
Q Consensus 472 L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~Ls~ 524 (788)
|++++|.+++. .+.....+++|++|++++|++++.....+ ..+|.+....+..
T Consensus 493 L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 493 LEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp EEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred eeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence 66666665433 22223446666666666666654322222 2345554444443
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=2.3e-26 Score=252.60 Aligned_cols=250 Identities=26% Similarity=0.251 Sum_probs=189.9
Q ss_pred CCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCC
Q 003888 325 LEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPE 404 (788)
Q Consensus 325 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~ 404 (788)
...++.++..++.++. .+ .+++++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++
T Consensus 56 ~~~v~c~~~~l~~iP~-~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQ-GI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSSCCS-CC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCccCC-CC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 4567777777776443 22 25788888888888877777888888888888888888877777888888888888888
Q ss_pred CcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCC-cCCCCC
Q 003888 405 NHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYN-RLNGSI 483 (788)
Q Consensus 405 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~ 483 (788)
|.++...+..|..+++|++|++++|.+.. ++...|..+++|+.|++++| .+....
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------------~~~~~~~~l~~L~~L~l~~~~~l~~i~ 188 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIES------------------------IPSYAFNRVPSLMRLDLGELKKLEYIS 188 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCE------------------------ECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcce------------------------eCHhHHhcCCcccEEeCCCCCCccccC
Confidence 88887766677888888888888887652 23333677788888888874 444444
Q ss_pred CccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCccccccccccc
Q 003888 484 PNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMM 563 (788)
Q Consensus 484 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (788)
+..|.++++|++|++++|++++. | .+..+++|+.|++++|++.+..|..|..
T Consensus 189 ~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------------------------- 240 (452)
T 3zyi_A 189 EGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHG-------------------------- 240 (452)
T ss_dssp TTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTT--------------------------
T ss_pred hhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccC--------------------------
Confidence 45677888888888888888744 3 4777888888888888887666655544
Q ss_pred chhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCE
Q 003888 564 IPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIES 643 (788)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 643 (788)
+++|+.|++++|++++..+..|..+++|+.|+|++|+++++.+..|..+++|++
T Consensus 241 --------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 294 (452)
T 3zyi_A 241 --------------------------LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVE 294 (452)
T ss_dssp --------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCE
T ss_pred --------------------------ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCE
Confidence 347888888888888888888888888888888888888877778888888888
Q ss_pred EECcCCcccccC
Q 003888 644 LDLSYNKLNGKI 655 (788)
Q Consensus 644 L~Ls~N~l~~~~ 655 (788)
|++++|++.+..
T Consensus 295 L~L~~Np~~CdC 306 (452)
T 3zyi_A 295 LHLHHNPWNCDC 306 (452)
T ss_dssp EECCSSCEECST
T ss_pred EEccCCCcCCCC
Confidence 888888877543
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=3e-26 Score=250.71 Aligned_cols=248 Identities=29% Similarity=0.279 Sum_probs=140.2
Q ss_pred CCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCC
Q 003888 325 LEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPE 404 (788)
Q Consensus 325 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~ 404 (788)
...++.++..++.++. .+ .++++.|++++|+++...+..|.++++|++|++++|.+.+..+..|.++++|++|++++
T Consensus 45 ~~~v~c~~~~l~~iP~-~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLREVPD-GI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSSCCS-CC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCcCCC-CC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 3455555555554332 22 14566666666666655555566666666666666666555555566666666666666
Q ss_pred CcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCC-cCCCCC
Q 003888 405 NHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYN-RLNGSI 483 (788)
Q Consensus 405 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~ 483 (788)
|.++...+..|..+++|++|++++|.+.. ++...|..+++|++|++++| .+....
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~------------------------~~~~~~~~l~~L~~L~l~~~~~l~~i~ 177 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIES------------------------IPSYAFNRIPSLRRLDLGELKRLSYIS 177 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCE------------------------ECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccc------------------------cCHHHhhhCcccCEeCCCCCCCcceeC
Confidence 66665544555666666666666665542 22222455566666666653 333333
Q ss_pred CccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCccccccccccc
Q 003888 484 PNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMM 563 (788)
Q Consensus 484 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (788)
+..|.++++|++|++++|+++. +| .+..+++|+.|++++|++.+..|..|..
T Consensus 178 ~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------------------------- 229 (440)
T 3zyj_A 178 EGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQG-------------------------- 229 (440)
T ss_dssp TTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTT--------------------------
T ss_pred cchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhcc--------------------------
Confidence 3355556666666666666652 22 3555666666666666665554444443
Q ss_pred chhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCE
Q 003888 564 IPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIES 643 (788)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 643 (788)
+++|+.|++++|++++..+..|.++++|+.|+|++|+++++.+..|..+++|+.
T Consensus 230 --------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 283 (440)
T 3zyj_A 230 --------------------------LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLER 283 (440)
T ss_dssp --------------------------CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCE
T ss_pred --------------------------CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCE
Confidence 235666666666666655666666666666666666666555555666666666
Q ss_pred EECcCCcccc
Q 003888 644 LDLSYNKLNG 653 (788)
Q Consensus 644 L~Ls~N~l~~ 653 (788)
|+|++|++.+
T Consensus 284 L~L~~Np~~C 293 (440)
T 3zyj_A 284 IHLHHNPWNC 293 (440)
T ss_dssp EECCSSCEEC
T ss_pred EEcCCCCccC
Confidence 6666666554
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=5.8e-27 Score=240.66 Aligned_cols=225 Identities=25% Similarity=0.281 Sum_probs=119.9
Q ss_pred CEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCC-CCCccEEEccCcccccccCcccccCCCCCcEEEccC
Q 003888 398 KHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFH-PLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSY 476 (788)
Q Consensus 398 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~ 476 (788)
+.++.+++.++. +|..+ .++|++|++++|.+++..+..+. +++|+.|++++|.+.+..+. .|..+++|++|++++
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA-AFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCS
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHh-hcCCccCCCEEeCCC
Confidence 566666666663 34332 35677777777777655444333 44555555555555332222 255555555555555
Q ss_pred Cc-CCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCccc
Q 003888 477 NR-LNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFET 555 (788)
Q Consensus 477 n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (788)
|. ++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..+..+..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------ 151 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD------------------ 151 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------------------
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc------------------
Confidence 54 44444455555555555555555555544555555555555555555555433333322
Q ss_pred ccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccc
Q 003888 556 SLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTF 635 (788)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 635 (788)
+++|+.|++++|++++..+..|..+++|++|++++|++++..|..|
T Consensus 152 ----------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 197 (285)
T 1ozn_A 152 ----------------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197 (285)
T ss_dssp ----------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred ----------------------------------CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHc
Confidence 2245555555555554444445555555555555555555555555
Q ss_pred cCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCccc
Q 003888 636 SNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGE 678 (788)
Q Consensus 636 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 678 (788)
..+++|++|++++|++++..+..+..+++|+.|++++|++.+.
T Consensus 198 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred cCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 5555555555555555544444455555555555555555543
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1e-26 Score=238.86 Aligned_cols=255 Identities=24% Similarity=0.256 Sum_probs=181.3
Q ss_pred CEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCC
Q 003888 350 RSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDN 429 (788)
Q Consensus 350 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 429 (788)
+.++.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 45566666555 334322 346666666666666555556666666777777766666655666666777777777776
Q ss_pred c-CCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccC
Q 003888 430 N-ISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVP 508 (788)
Q Consensus 430 ~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 508 (788)
. +... +...+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+
T Consensus 91 ~~l~~~------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 146 (285)
T 1ozn_A 91 AQLRSV------------------------DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146 (285)
T ss_dssp TTCCCC------------------------CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCcccc------------------------CHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH
Confidence 5 4322 22225666777777777777777667777778888888888888876666
Q ss_pred cccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeeccc
Q 003888 509 VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGK 588 (788)
Q Consensus 509 ~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (788)
..+..+++|+.|++++|++.+..+..+..
T Consensus 147 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------------------------------------------- 175 (285)
T 1ozn_A 147 DTFRDLGNLTHLFLHGNRISSVPERAFRG--------------------------------------------------- 175 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTT---------------------------------------------------
T ss_pred hHhccCCCccEEECCCCcccccCHHHhcC---------------------------------------------------
Confidence 66778888888888888777555444443
Q ss_pred ccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEE
Q 003888 589 VLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVF 668 (788)
Q Consensus 589 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 668 (788)
+++|+.|++++|.+++..|..|..+++|+.|++++|++++..+..+..+++|++|++++|++.+..+.. .-...++.+
T Consensus 176 -l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~ 253 (285)
T 1ozn_A 176 -LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKF 253 (285)
T ss_dssp -CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHC
T ss_pred -ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhc
Confidence 347888888888888888889999999999999999999887788999999999999999998655432 122345555
Q ss_pred EccCCcCcccCCCccc
Q 003888 669 SVAYNNLSGEIPEWTA 684 (788)
Q Consensus 669 ~l~~N~l~~~~p~~~~ 684 (788)
..+.+.+.|..|+.+.
T Consensus 254 ~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 254 RGSSSEVPCSLPQRLA 269 (285)
T ss_dssp CSEECCCBEEESGGGT
T ss_pred ccccCccccCCchHhC
Confidence 6778888888887543
No 60
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=2.3e-28 Score=279.22 Aligned_cols=424 Identities=14% Similarity=0.076 Sum_probs=291.9
Q ss_pred CCCCCCCccEEEcccCCcccc-----------cc---hhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccC-CC-CCC
Q 003888 14 GFPHFKSLDHLDMVFARTALN-----------TS---FLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCS-LM-HLQ 77 (788)
Q Consensus 14 ~l~~~~~L~~L~L~~~~~~~~-----------~~---~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~-l~-~L~ 77 (788)
.+..+++|++|++ +++... +. ....+...+++|++|+|++|.+. ...+ ..+.. ++ +|+
T Consensus 68 ~~~~~~~L~~L~L--~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~---~~~~-~~l~~~~~~~L~ 141 (592)
T 3ogk_B 68 LSRRFPNLRSLKL--KGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVS---DLDL-DRLAKARADDLE 141 (592)
T ss_dssp HHHHCTTCSEEEE--ECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCC---HHHH-HHHHHHHGGGCC
T ss_pred HHHhCCCCeEEEe--cCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEec---HHHH-HHHHHhccccCc
Confidence 4567888999999 765321 11 12223337899999999998874 3322 23444 33 499
Q ss_pred EEEcCCCC-CCc-CCChhhcCCCCCCEEECCCCcCcCc----CChhhhcCCCCCCEEECcCccccccC---CccccccCC
Q 003888 78 ELYIDNND-LRG-SLPWCLANMTSLRILDVSSNQLTGS----ISSSPLVHLTSIEELMLSNNHFQIPI---SLEPLFNHS 148 (788)
Q Consensus 78 ~L~Ls~n~-l~~-~~~~~l~~l~~L~~L~Ls~n~~~~~----i~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~~l~~l~ 148 (788)
+|+|++|. ++. .++....++++|++|+|++|.+++. ++. .+.++++|++|++++|.+.+.. ....+.+++
T Consensus 142 ~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~ 220 (592)
T 3ogk_B 142 TLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE-LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCR 220 (592)
T ss_dssp EEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH-HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCT
T ss_pred EEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHH-HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCC
Confidence 99999886 221 1333445889999999999988644 333 4567899999999999876211 112456789
Q ss_pred CCcEEEccCccccccccccccCCCCcccccEEEccCCCCCC---CCcCccccCCCCCCEEEcCCCcCCCCCchhHhhcCC
Q 003888 149 RLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDG---VTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNT 225 (788)
Q Consensus 149 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~ 225 (788)
+|++|++++|.+.+.. .. .....+|++|+++. +... ...+..+..+++|+.++++++. ...+|.. +..++
T Consensus 221 ~L~~L~L~~~~~~~l~-~~---~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~-~~~~~ 293 (592)
T 3ogk_B 221 SLVSVKVGDFEILELV-GF---FKAAANLEEFCGGS-LNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPIL-FPFAA 293 (592)
T ss_dssp TCCEEECSSCBGGGGH-HH---HHHCTTCCEEEECB-CCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGG-GGGGG
T ss_pred CCcEEeccCccHHHHH-HH---HhhhhHHHhhcccc-cccccchHHHHHHhhccccccccCccccc-hhHHHHH-HhhcC
Confidence 9999999998876522 11 12234788888832 2221 3345667788999999998853 3334544 46889
Q ss_pred CCCEEEcCCCcccccCc-cCcCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEccc-----------CcCCCCCc-c
Q 003888 226 KLRQLYLVNDSLTGPFR-LPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISM-----------NALDSSIP-S 292 (788)
Q Consensus 226 ~L~~L~L~~~~l~~~~~-~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~-----------n~~~~~~~-~ 292 (788)
+|++|++++|.+++... ..+..+++|++|+++ +.+.+.....+...+++|++|++++ +.++.... .
T Consensus 294 ~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~ 372 (592)
T 3ogk_B 294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA 372 (592)
T ss_dssp GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHH
T ss_pred CCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHH
Confidence 99999999999765443 336789999999999 5555444455556689999999993 45553322 2
Q ss_pred cccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEcc----CccCCCcC-----cccCcCCCCCCEEeccCCc--CCC
Q 003888 293 SFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALS----NNNLKGHM-----FSRNFNLTNLRSLQLEGNH--LEG 361 (788)
Q Consensus 293 ~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~----~n~i~~~~-----~~~~~~l~~L~~L~l~~n~--l~~ 361 (788)
....+++|++|+++.+.+++..+..+...+++|++|+++ .|.+++.+ ...+.++++|++|+++.|. +++
T Consensus 373 l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~ 452 (592)
T 3ogk_B 373 LAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD 452 (592)
T ss_dssp HHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH
T ss_pred HHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH
Confidence 245689999999999999877777777669999999996 56777642 2224568999999998654 554
Q ss_pred cCCcccc-CCCCCCEEEccCCcCCCC-CcccccCCCCCCEEeCCCCcccCCc-cccccCCCCccEEEccCCcCCCCCCCC
Q 003888 362 EIPQSLS-KCSSLEGLYLNNNSLSGK-IPRWLGNLTGLKHIIMPENHLEGPI-PVGFCQLYSLQILDISDNNISGSLPSC 438 (788)
Q Consensus 362 ~~~~~l~-~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~ 438 (788)
..+..+. .+++|++|++++|.+++. .+..+..+++|++|++++|.+++.. +.....+++|++|++++|++++.....
T Consensus 453 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~ 532 (592)
T 3ogk_B 453 LGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDL 532 (592)
T ss_dssp HHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTG
T ss_pred HHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHH
Confidence 4443343 488999999999998753 3445678899999999999986543 333457899999999999987654333
Q ss_pred CC--CCCccEEEccCc
Q 003888 439 FH--PLSIEQVHLSKN 452 (788)
Q Consensus 439 ~~--~~~L~~L~l~~n 452 (788)
+. .+.+....+..+
T Consensus 533 l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 533 MQMARPYWNIELIPSR 548 (592)
T ss_dssp GGGCCTTEEEEEECCC
T ss_pred HHHhCCCcEEEEecCc
Confidence 32 455555444443
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.1e-25 Score=235.27 Aligned_cols=233 Identities=21% Similarity=0.311 Sum_probs=130.0
Q ss_pred CCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEc
Q 003888 347 TNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDI 426 (788)
Q Consensus 347 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 426 (788)
++++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 44555555555555 44555555666666666666665 45555566666666666666665 44556666677777777
Q ss_pred cCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccc
Q 003888 427 SDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGE 506 (788)
Q Consensus 427 ~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 506 (788)
++|++.+..|..+.. . .+ .+.+..+++|++|++++|+++ .+|..+..+++|++|++++|++++
T Consensus 158 ~~n~~~~~~p~~~~~-----~---------~~-~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~- 220 (328)
T 4fcg_A 158 RACPELTELPEPLAS-----T---------DA-SGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA- 220 (328)
T ss_dssp EEETTCCCCCSCSEE-----E---------C--CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-
T ss_pred CCCCCccccChhHhh-----c---------cc-hhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-
Confidence 776655444432210 0 00 011445566666666666665 455556666666666666666653
Q ss_pred cCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeec
Q 003888 507 VPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQ 586 (788)
Q Consensus 507 ~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (788)
+|..+..+++|+.|++++|++.
T Consensus 221 l~~~l~~l~~L~~L~Ls~n~~~---------------------------------------------------------- 242 (328)
T 4fcg_A 221 LGPAIHHLPKLEELDLRGCTAL---------------------------------------------------------- 242 (328)
T ss_dssp CCGGGGGCTTCCEEECTTCTTC----------------------------------------------------------
T ss_pred CchhhccCCCCCEEECcCCcch----------------------------------------------------------
Confidence 3334555555555555555544
Q ss_pred ccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCC
Q 003888 587 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLA 666 (788)
Q Consensus 587 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 666 (788)
+.+|..++.+++|++|+|++|++.+.+|..+.++++|++|++++|++.+.+|..+..+++|+
T Consensus 243 ------------------~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~ 304 (328)
T 4fcg_A 243 ------------------RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304 (328)
T ss_dssp ------------------CBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred ------------------hhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence 44444555555555555555555555555555555555555555555555555555555555
Q ss_pred EEEccCCcC
Q 003888 667 VFSVAYNNL 675 (788)
Q Consensus 667 ~L~l~~N~l 675 (788)
.+++..|.+
T Consensus 305 ~l~l~~~~~ 313 (328)
T 4fcg_A 305 IILVPPHLQ 313 (328)
T ss_dssp EEECCGGGS
T ss_pred EEeCCHHHH
Confidence 555555443
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.3e-24 Score=244.18 Aligned_cols=84 Identities=26% Similarity=0.272 Sum_probs=48.6
Q ss_pred cccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEcc
Q 003888 592 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVA 671 (788)
Q Consensus 592 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 671 (788)
+|+.|++++|.+++ +| ..+++|+.|+|++|+|+.+. . .+++|++|++++|+++ .+|..+..+++|+.|+++
T Consensus 222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp-~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLP-M---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292 (622)
T ss_dssp TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCC-c---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence 45555666665553 33 33456666666666666432 2 3456666666666666 456666666666666666
Q ss_pred CCcCcccCCCccc
Q 003888 672 YNNLSGEIPEWTA 684 (788)
Q Consensus 672 ~N~l~~~~p~~~~ 684 (788)
+|++++.+|..+.
T Consensus 293 ~N~l~~~~~~~l~ 305 (622)
T 3g06_A 293 GNPLSERTLQALR 305 (622)
T ss_dssp SCCCCHHHHHHHH
T ss_pred CCCCCCcCHHHHH
Confidence 6666665555443
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.2e-27 Score=249.35 Aligned_cols=263 Identities=22% Similarity=0.218 Sum_probs=158.4
Q ss_pred EEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcc
Q 003888 328 LALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHL 407 (788)
Q Consensus 328 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~ 407 (788)
.+++.+.+.......+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+ +..+++|++|++++|.+
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l 92 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV 92 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEE
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcc
Confidence 3444444433333333344455555555555554444455555555555555555543222 45555555555555554
Q ss_pred cCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccc
Q 003888 408 EGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWV 487 (788)
Q Consensus 408 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 487 (788)
++.. ..++|++|++++|.++ +.. ...+++|++|++++|++++..+..+
T Consensus 93 ~~l~-----~~~~L~~L~l~~n~l~-----------------------~~~----~~~~~~L~~L~l~~N~l~~~~~~~~ 140 (317)
T 3o53_A 93 QELL-----VGPSIETLHAANNNIS-----------------------RVS----CSRGQGKKNIYLANNKITMLRDLDE 140 (317)
T ss_dssp EEEE-----ECTTCCEEECCSSCCS-----------------------EEE----ECCCSSCEEEECCSSCCCSGGGBCT
T ss_pred cccc-----CCCCcCEEECCCCccC-----------------------CcC----ccccCCCCEEECCCCCCCCccchhh
Confidence 4221 1244455555444443 222 1234678888888888887767777
Q ss_pred cCCCCCCEEEccCCcCccccCcccC-CCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchh
Q 003888 488 DGLSQLSHLILGHNNLEGEVPVQLC-ELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPA 566 (788)
Q Consensus 488 ~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (788)
..+++|++|++++|.+++..+..+. .+++|++|++++|++++..+..
T Consensus 141 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-------------------------------- 188 (317)
T 3o53_A 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-------------------------------- 188 (317)
T ss_dssp GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC--------------------------------
T ss_pred hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccccc--------------------------------
Confidence 7788888888888888876666553 6778888888888775321100
Q ss_pred hhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEEC
Q 003888 567 EKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDL 646 (788)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 646 (788)
.+++|+.|++++|++++..+ .+..+++|+.|++++|+++++ |..+..+++|++|++
T Consensus 189 ----------------------~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~~l-~~~~~~l~~L~~L~l 244 (317)
T 3o53_A 189 ----------------------VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDL 244 (317)
T ss_dssp ----------------------CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEEC
T ss_pred ----------------------ccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCcccch-hhHhhcCCCCCEEEc
Confidence 13467777777777775433 477777777777777777753 556777777777777
Q ss_pred cCCccc-ccCCccccCCCCCCEEEccCC-cCcccCC
Q 003888 647 SYNKLN-GKIPHQLVELKTLAVFSVAYN-NLSGEIP 680 (788)
Q Consensus 647 s~N~l~-~~~p~~l~~l~~L~~L~l~~N-~l~~~~p 680 (788)
++|++. +.+|..+..++.|+.+++++| .+++..|
T Consensus 245 ~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 245 RGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp TTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred cCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 777777 556666777777777777743 4444333
No 64
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=3.1e-25 Score=231.79 Aligned_cols=223 Identities=21% Similarity=0.244 Sum_probs=181.1
Q ss_pred CCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEc
Q 003888 395 TGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDL 474 (788)
Q Consensus 395 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L 474 (788)
+.++.|++++|.+. .+|..+..+++|++|++++|.++ .+|.. +..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~------------------------~lp~~-~~~l~~L~~L~L 134 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM------------------------ELPDT-MQQFAGLETLTL 134 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC------------------------CCCSC-GGGGTTCSEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc------------------------chhHH-HhccCCCCEEEC
Confidence 45566666666655 44444555566666666665554 34433 677888888888
Q ss_pred cCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCC---------CCCCCEEEccCCcCCCCCCCCCcCcccccccC
Q 003888 475 SYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCE---------LNQLQLLDLSNNNLHGPIPPCFDNTTLHESSN 545 (788)
Q Consensus 475 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~---------l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~ 545 (788)
++|.++ .+|..+..+++|++|++++|++.+.+|..+.. +++|+.|++++|+++ .+|..+..
T Consensus 135 s~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~-------- 204 (328)
T 4fcg_A 135 ARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN-------- 204 (328)
T ss_dssp ESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGG--------
T ss_pred CCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcC--------
Confidence 888888 66778888888999999888877777766654 999999999999987 45544433
Q ss_pred CCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCC
Q 003888 546 NSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHN 625 (788)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N 625 (788)
+++|+.|++++|.+++ +|..++.+++|++|++++|
T Consensus 205 --------------------------------------------l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n 239 (328)
T 4fcg_A 205 --------------------------------------------LQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGC 239 (328)
T ss_dssp --------------------------------------------CTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTC
T ss_pred --------------------------------------------CCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCC
Confidence 4589999999999995 6668999999999999999
Q ss_pred cCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCCcccccCCCCccccCCCC
Q 003888 626 NLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNT 698 (788)
Q Consensus 626 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~gn~ 698 (788)
++.+.+|..++++++|++|++++|.+.+.+|..+..+++|+.|++++|++.+.+|.++..++++..+.+..+.
T Consensus 240 ~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp TTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred cchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999988887776654
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=4.5e-27 Score=245.03 Aligned_cols=261 Identities=19% Similarity=0.193 Sum_probs=195.8
Q ss_pred CCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccC
Q 003888 349 LRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISD 428 (788)
Q Consensus 349 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 428 (788)
++..+++.+.+.......+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4555666666654444555667788899999988887777788888889999999888876544 78888888888888
Q ss_pred CcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccC
Q 003888 429 NNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVP 508 (788)
Q Consensus 429 n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 508 (788)
|.+++ +...++|++|++++|++++..+. .+++|++|++++|++++..+
T Consensus 90 n~l~~-----------------------------l~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~ 137 (317)
T 3o53_A 90 NYVQE-----------------------------LLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRD 137 (317)
T ss_dssp SEEEE-----------------------------EEECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGG
T ss_pred Ccccc-----------------------------ccCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccc
Confidence 87652 12237888888888888765443 35778899999998887777
Q ss_pred cccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeeccc
Q 003888 509 VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGK 588 (788)
Q Consensus 509 ~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (788)
..+..+++|+.|++++|++.+..+..+..
T Consensus 138 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------------------------------------------------- 166 (317)
T 3o53_A 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAA--------------------------------------------------- 166 (317)
T ss_dssp BCTGGGSSEEEEECTTSCCCEEEGGGGGG---------------------------------------------------
T ss_pred hhhhccCCCCEEECCCCCCCcccHHHHhh---------------------------------------------------
Confidence 78888888999999988887543332210
Q ss_pred ccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEE
Q 003888 589 VLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVF 668 (788)
Q Consensus 589 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 668 (788)
.+++|+.|++++|.+++. + ....+++|++|+|++|+++++.+ .+..+++|++|++++|+++ .+|..+..+++|+.|
T Consensus 167 ~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L 242 (317)
T 3o53_A 167 SSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHF 242 (317)
T ss_dssp GTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEE
T ss_pred ccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhhcCCCCCEE
Confidence 145788899999888855 3 23358888999999998887654 4888888999999999888 567778888889999
Q ss_pred EccCCcCc-ccCCCcccccCCCCccccCCCC
Q 003888 669 SVAYNNLS-GEIPEWTAQFATFNESSYEGNT 698 (788)
Q Consensus 669 ~l~~N~l~-~~~p~~~~~~~~~~~~~~~gn~ 698 (788)
++++|+++ +.+|.++..+..+..+.+.+++
T Consensus 243 ~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp ECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred EccCCCccCcCHHHHHhccccceEEECCCch
Confidence 99999888 5666766777666666666443
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.2e-26 Score=253.77 Aligned_cols=62 Identities=18% Similarity=0.080 Sum_probs=36.5
Q ss_pred CCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccC-CCCCCCEEEccCCcCC
Q 003888 467 SSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLC-ELNQLQLLDLSNNNLH 528 (788)
Q Consensus 467 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~Ls~n~i~ 528 (788)
++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|+.|++++|.++
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 5566666666666655555555566666666666666655555543 4555666666655554
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=1.1e-23 Score=236.46 Aligned_cols=68 Identities=26% Similarity=0.356 Sum_probs=46.9
Q ss_pred ccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCC
Q 003888 591 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELK 663 (788)
Q Consensus 591 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 663 (788)
++|+.|++++|.++ .+|. .+++|+.|+|++|+|+ .+|..+.++++|+.|+|++|++++..|..+..++
T Consensus 241 ~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 241 SELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 36677777777776 3443 4567777777777777 3466677777788888888877777776655543
No 68
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=1.7e-27 Score=272.15 Aligned_cols=405 Identities=17% Similarity=0.136 Sum_probs=208.7
Q ss_pred ccCCCCCCEEEcCCCcCCCCC--------------chhHhhcCCCCCEEEcCCCcccccCccCcC-CCCCccEEEcccC-
Q 003888 196 LYHQHDLEDVRLSHVNMDGEF--------------PNWLLENNTKLRQLYLVNDSLTGPFRLPIH-SHRWLRFLDVSNN- 259 (788)
Q Consensus 196 l~~~~~L~~L~l~~~~~~~~~--------------~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~-~~~~L~~L~L~~n- 259 (788)
+..+++|++++++++.....+ ...+...+++|++|++++|.+++..+..+. .+++|++|++++|
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 345566777777665422111 012334667777777777777665444443 4677777777777
Q ss_pred cCcccCChhhhhcCCCCcEEEcccCcCCCCCcccc----cCCCCCCEEEcccCc--CCCccchHHHhcCCCCCEEEccCc
Q 003888 260 NFQGHIPVEIGDILPSLISFNISMNALDSSIPSSF----GNMNFLQILDLSNNQ--LTGEIPEHLAVSCVNLEFLALSNN 333 (788)
Q Consensus 260 ~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~----~~l~~L~~L~l~~n~--i~~~i~~~~~~~l~~L~~L~L~~n 333 (788)
.+++.....+...+++|++|++++|.+++..+..+ ..+++|++|++++|. +.......+...+++|++|++++|
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 44432233344446778888888777665443333 356678888887775 221112222334677888877776
Q ss_pred -cCCCcCcccCcCCCCCCEEeccCCc-------CCCcCCccccCCCCCCEE-EccCCcCCCCCcccccCCCCCCEEeCCC
Q 003888 334 -NLKGHMFSRNFNLTNLRSLQLEGNH-------LEGEIPQSLSKCSSLEGL-YLNNNSLSGKIPRWLGNLTGLKHIIMPE 404 (788)
Q Consensus 334 -~i~~~~~~~~~~l~~L~~L~l~~n~-------l~~~~~~~l~~l~~L~~L-~L~~n~i~~~~~~~~~~l~~L~~L~l~~ 404 (788)
.+.+ .+..+..+++|++|+++.+. +. .++..+.++++|+.+ .+.+... ...+..+..+++|++|++++
T Consensus 222 ~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~ 298 (594)
T 2p1m_B 222 VPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSY 298 (594)
T ss_dssp SCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTT
T ss_pred CcHHH-HHHHHhcCCcceEcccccccCccchhhHH-HHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccC
Confidence 3332 34445566777777755443 22 123356667777777 2332211 12333334567777777777
Q ss_pred CcccCCccc-cccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccC-------
Q 003888 405 NHLEGPIPV-GFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSY------- 476 (788)
Q Consensus 405 n~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~------- 476 (788)
|.+.+.... .+..+++|++|++++| +.+ .........+++|++|++++
T Consensus 299 ~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~-----------------------~~l~~l~~~~~~L~~L~L~~~~~~g~~ 354 (594)
T 2p1m_B 299 ATVQSYDLVKLLCQCPKLQRLWVLDY-IED-----------------------AGLEVLASTCKDLRELRVFPSEPFVME 354 (594)
T ss_dssp CCCCHHHHHHHHTTCTTCCEEEEEGG-GHH-----------------------HHHHHHHHHCTTCCEEEEECSCTTCSS
T ss_pred CCCCHHHHHHHHhcCCCcCEEeCcCc-cCH-----------------------HHHHHHHHhCCCCCEEEEecCcccccc
Confidence 765432222 2446677777777665 221 00011122355566665522
Q ss_pred --CcCCCCCCccc-cCCCCCCEEEccCCcCccccCcccC-CCCCCCEEEcc--C----CcCCCCCCC-CCcCcccccccC
Q 003888 477 --NRLNGSIPNWV-DGLSQLSHLILGHNNLEGEVPVQLC-ELNQLQLLDLS--N----NNLHGPIPP-CFDNTTLHESSN 545 (788)
Q Consensus 477 --n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~Ls--~----n~i~~~~~~-~~~~~~~~~~~~ 545 (788)
+.+++.....+ .++++|++|.+..|.+++.....+. .+++|+.|+++ + +.++..... .+.
T Consensus 355 ~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~--------- 425 (594)
T 2p1m_B 355 PNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFG--------- 425 (594)
T ss_dssp CSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHH---------
T ss_pred cCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHH---------
Confidence 22322111112 2356666666666666544333333 35666666666 2 222110000 000
Q ss_pred CCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccC-cccCCeEeCCC
Q 003888 546 NSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGN-LTRIQTLNLSH 624 (788)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~Ls~ 624 (788)
.. ...+++|+.|++++ .+++..+..+.. +++|+.|+|++
T Consensus 426 -------------------------------------~l--~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~ 465 (594)
T 2p1m_B 426 -------------------------------------AI--VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAF 465 (594)
T ss_dssp -------------------------------------HH--HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEES
T ss_pred -------------------------------------HH--HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccC
Confidence 00 01134566666655 444444444443 56666666666
Q ss_pred CcCCccCCccc-cCCCCCCEEECcCCcccccCCc-cccCCCCCCEEEccCCcCc
Q 003888 625 NNLTGLIPSTF-SNLKHIESLDLSYNKLNGKIPH-QLVELKTLAVFSVAYNNLS 676 (788)
Q Consensus 625 N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~l~~N~l~ 676 (788)
|.+++..+..+ ..+++|++|++++|++++..+. ....+++|+.|++++|+++
T Consensus 466 ~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 466 AGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp CCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred CCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 66654433333 4456666666666666433322 2234566666666666653
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=1.1e-23 Score=213.98 Aligned_cols=206 Identities=23% Similarity=0.283 Sum_probs=120.3
Q ss_pred CccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEcc
Q 003888 420 SLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILG 499 (788)
Q Consensus 420 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 499 (788)
..+.++++++.++...... ..+++.|++++|.+. .++...|..+++|++|++++|.++...+..|..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI--PADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCC--CCCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 4678888888877543222 245666666666653 3333336666666666666666665444455556666666666
Q ss_pred CCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeec
Q 003888 500 HNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTK 579 (788)
Q Consensus 500 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (788)
+|++++..+..|..+++|++|++++|++.+..+..|..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------------------------ 131 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS------------------------------------------ 131 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT------------------------------------------
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc------------------------------------------
Confidence 66666555555566666666666666665544444433
Q ss_pred cceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccc
Q 003888 580 NIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQL 659 (788)
Q Consensus 580 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 659 (788)
+++|+.|++++|.+++..+..|..+++|++|++++|+++++.+..|..+++|++|++++|++++..+..+
T Consensus 132 ----------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 201 (270)
T 2o6q_A 132 ----------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF 201 (270)
T ss_dssp ----------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred ----------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHh
Confidence 2356666666666665544455666666666666666665555556666666666666666655444455
Q ss_pred cCCCCCCEEEccCCcCcccCC
Q 003888 660 VELKTLAVFSVAYNNLSGEIP 680 (788)
Q Consensus 660 ~~l~~L~~L~l~~N~l~~~~p 680 (788)
..+++|+.|++++|++.+..+
T Consensus 202 ~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 202 DSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTCTTCCEEECCSSCBCCSSS
T ss_pred ccccCCCEEEecCCCeeCCCc
Confidence 556666666666666655443
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=8.1e-26 Score=234.94 Aligned_cols=132 Identities=24% Similarity=0.294 Sum_probs=71.6
Q ss_pred ccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCc-CcccCc-------CCCCCCEEeccCCcCCCcCCc
Q 003888 294 FGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGH-MFSRNF-------NLTNLRSLQLEGNHLEGEIPQ 365 (788)
Q Consensus 294 ~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~-------~l~~L~~L~l~~n~l~~~~~~ 365 (788)
++..++|++|++++|.+ .+|..+... |+.|++++|.++.. .+..+. ++++|++|++++|.+++..|.
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 34445566666666666 555555432 55556666655321 122221 456666666666666655555
Q ss_pred cc--cCCCCCCEEEccCCcCCCCCcccccCC-----CCCCEEeCCCCcccCCccccccCCCCccEEEccCCcC
Q 003888 366 SL--SKCSSLEGLYLNNNSLSGKIPRWLGNL-----TGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNI 431 (788)
Q Consensus 366 ~l--~~l~~L~~L~L~~n~i~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 431 (788)
.+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|++
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 185 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTT
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCc
Confidence 54 5666666666666666644 4444443 4555555555555544444555555555555555543
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.4e-25 Score=247.39 Aligned_cols=244 Identities=21% Similarity=0.223 Sum_probs=150.6
Q ss_pred CCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccC
Q 003888 372 SLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSK 451 (788)
Q Consensus 372 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~ 451 (788)
+|+.|++++|.+++..|..|..+++|++|++++|.+.+..+ +..+++|++|++++|.+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~------------------ 94 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE------------------ 94 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE------------------
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC------------------
Confidence 45555555555554444555555555555555555554333 5555666666666665442
Q ss_pred cccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCC
Q 003888 452 NMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPI 531 (788)
Q Consensus 452 n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~ 531 (788)
+...++|+.|++++|.+++..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..
T Consensus 95 -----------l~~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (487)
T 3oja_A 95 -----------LLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (487)
T ss_dssp -----------EEECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE
T ss_pred -----------CCCCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC
Confidence 11125666666666666654332 3466777777777777666667777777777777777776544
Q ss_pred CCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccc
Q 003888 532 PPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI 611 (788)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l 611 (788)
|..+.. .+++|+.|+|++|.+++.. .+
T Consensus 161 ~~~l~~---------------------------------------------------~l~~L~~L~Ls~N~l~~~~--~~ 187 (487)
T 3oja_A 161 FAELAA---------------------------------------------------SSDTLEHLNLQYNFIYDVK--GQ 187 (487)
T ss_dssp GGGGGG---------------------------------------------------GTTTCCEEECTTSCCCEEE--CC
T ss_pred hHHHhh---------------------------------------------------hCCcccEEecCCCcccccc--cc
Confidence 433321 1346777777777777552 23
Q ss_pred cCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCc-ccCCCcccccCCCC
Q 003888 612 GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLS-GEIPEWTAQFATFN 690 (788)
Q Consensus 612 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~-~~~p~~~~~~~~~~ 690 (788)
..+++|+.|+|++|++++++|. +..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|.++..+..+.
T Consensus 188 ~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~ 265 (487)
T 3oja_A 188 VVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265 (487)
T ss_dssp CCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHH
T ss_pred ccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCc
Confidence 3477777777777777765443 6677777777777777774 5666777777777777777777 44555555555544
Q ss_pred ccccC-------CCCCCCCCC
Q 003888 691 ESSYE-------GNTFLCGLP 704 (788)
Q Consensus 691 ~~~~~-------gn~~~c~~~ 704 (788)
.+... ++++.|.|+
T Consensus 266 ~l~~~~~~~~~~~~~~~c~~~ 286 (487)
T 3oja_A 266 TVAKQTVKKLTGQNEEECTVP 286 (487)
T ss_dssp HHHHHHHHHHTSSSSCCCSST
T ss_pred EEeccccccccCCCcccccCC
Confidence 44443 778888775
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=5.1e-26 Score=236.49 Aligned_cols=204 Identities=25% Similarity=0.267 Sum_probs=106.1
Q ss_pred CCCCCEEEcccCcCCCccchHHH-hcCCCCCEEEccCccCCCcCcccCcCC-----CCCCEEeccCCcCCCcCCccccCC
Q 003888 297 MNFLQILDLSNNQLTGEIPEHLA-VSCVNLEFLALSNNNLKGHMFSRNFNL-----TNLRSLQLEGNHLEGEIPQSLSKC 370 (788)
Q Consensus 297 l~~L~~L~l~~n~i~~~i~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~l~~l 370 (788)
+++|++|++++|.+++.+|..++ ..+++|++|++++|++++. +..+..+ ++|++|++++|++++..+..+..+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 44444444444444433333321 2344444444444444433 2222222 455555555555554444555555
Q ss_pred CCCCEEEccCCcCCCC--Ccccc--cCCCCCCEEeCCCCcccCC---ccccccCCCCccEEEccCCcCCCCCCCCCCCCC
Q 003888 371 SSLEGLYLNNNSLSGK--IPRWL--GNLTGLKHIIMPENHLEGP---IPVGFCQLYSLQILDISDNNISGSLPSCFHPLS 443 (788)
Q Consensus 371 ~~L~~L~L~~n~i~~~--~~~~~--~~l~~L~~L~l~~n~~~~~---~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 443 (788)
++|++|++++|++.+. .+..+ ..+++|++|++++|.+.+. ....+..+++|++|++++|.+++..
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------- 244 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA-------- 244 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC--------
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc--------
Confidence 5555555555554332 11222 4556666666666665521 1122345566666666666665432
Q ss_pred ccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEcc
Q 003888 444 IEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLS 523 (788)
Q Consensus 444 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 523 (788)
+...+..+++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|++|+++
T Consensus 245 ---------------~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~ 304 (312)
T 1wwl_A 245 ---------------GAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLK 304 (312)
T ss_dssp ---------------CCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECT
T ss_pred ---------------chhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEecc
Confidence 1122344566777777777766 4455444 6677777777777654 44 6667777777777
Q ss_pred CCcCCC
Q 003888 524 NNNLHG 529 (788)
Q Consensus 524 ~n~i~~ 529 (788)
+|++++
T Consensus 305 ~N~l~~ 310 (312)
T 1wwl_A 305 GNPFLD 310 (312)
T ss_dssp TCTTTC
T ss_pred CCCCCC
Confidence 777653
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=9.1e-24 Score=215.66 Aligned_cols=189 Identities=25% Similarity=0.299 Sum_probs=111.1
Q ss_pred ccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCccccc
Q 003888 463 FFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE 542 (788)
Q Consensus 463 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 542 (788)
|..+++|++|++++|++++..+..+..+++|++|++++|++++..+..|.++++|++|++++|++.+..+..+..
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----- 122 (276)
T 2z62_A 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH----- 122 (276)
T ss_dssp TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTT-----
T ss_pred hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhccc-----
Confidence 555566666666666665555555666666666666666666555555666666666666666665444333322
Q ss_pred ccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCccccc-CcccccCcccCCeEe
Q 003888 543 SSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGH-IPPQIGNLTRIQTLN 621 (788)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~ 621 (788)
+++|+.|++++|.+++. +|..+..+++|++|+
T Consensus 123 -----------------------------------------------l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~ 155 (276)
T 2z62_A 123 -----------------------------------------------LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155 (276)
T ss_dssp -----------------------------------------------CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred -----------------------------------------------CCCCCEEECcCCccceecCchhhccCCCCCEEE
Confidence 23566666666666543 355666666666666
Q ss_pred CCCCcCCccCCccccCCCCCC----EEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCCcccccCCCCccccCCC
Q 003888 622 LSHNNLTGLIPSTFSNLKHIE----SLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGN 697 (788)
Q Consensus 622 Ls~N~l~~~~~~~~~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~gn 697 (788)
+++|++++..+..+..+++|+ +|++++|++++..+..+. ..+|+.|++++|++++..+..+..+.++..+++.+|
T Consensus 156 Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred CCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 666666665555555555555 666666666644443333 235666666666666555554555666666666666
Q ss_pred CCCCCCC
Q 003888 698 TFLCGLP 704 (788)
Q Consensus 698 ~~~c~~~ 704 (788)
|+.|+|+
T Consensus 235 ~~~c~c~ 241 (276)
T 2z62_A 235 PWDCSCP 241 (276)
T ss_dssp CBCCCTT
T ss_pred cccccCC
Confidence 6666664
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.6e-23 Score=213.79 Aligned_cols=209 Identities=26% Similarity=0.321 Sum_probs=140.4
Q ss_pred CCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEcc
Q 003888 396 GLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLS 475 (788)
Q Consensus 396 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~ 475 (788)
++++|++++|.+++..+..|.++++|++|++++|.+.+ ++...|..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------------------~~~~~~~~l~~L~~L~L~ 84 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT------------------------IEDGAYQSLSHLSTLILT 84 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCE------------------------ECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCc------------------------cCHHHccCCcCCCEEECC
Confidence 45555555555554444445555555555555555432 122225555666666666
Q ss_pred CCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCC-CCCCCcCcccccccCCCCCCCCcc
Q 003888 476 YNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGP-IPPCFDNTTLHESSNNSYSLKPFE 554 (788)
Q Consensus 476 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 554 (788)
+|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|++.+. +|..+..
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~----------------- 147 (276)
T 2z62_A 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN----------------- 147 (276)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG-----------------
T ss_pred CCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhcc-----------------
Confidence 6666655556666667777777777776655555666777777777777776543 2433333
Q ss_pred cccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCC----eEeCCCCcCCcc
Q 003888 555 TSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQ----TLNLSHNNLTGL 630 (788)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~----~L~Ls~N~l~~~ 630 (788)
+++|+.|++++|++++..+..+..+++|+ +|++++|+++++
T Consensus 148 -----------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~ 192 (276)
T 2z62_A 148 -----------------------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192 (276)
T ss_dssp -----------------------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEE
T ss_pred -----------------------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCccccc
Confidence 34677777777777777777777777777 889999999887
Q ss_pred CCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCC
Q 003888 631 IPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPE 681 (788)
Q Consensus 631 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~ 681 (788)
.+..+.. .+|++|++++|++++..+..+..+++|+.|++++|+++|..|.
T Consensus 193 ~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 193 QPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp CTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred CccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 7666654 4799999999999877667778899999999999999987763
No 75
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=1.4e-26 Score=264.61 Aligned_cols=426 Identities=13% Similarity=0.075 Sum_probs=279.8
Q ss_pred CCCCCCCccEEEcccCCcccccch--------------hHHHhhcCCCCcEEeCCCCCCCCCCCCCCccccc-CCCCCCE
Q 003888 14 GFPHFKSLDHLDMVFARTALNTSF--------------LQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLC-SLMHLQE 78 (788)
Q Consensus 14 ~l~~~~~L~~L~L~~~~~~~~~~~--------------~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~-~l~~L~~ 78 (788)
.+..+++|+.|++ +++.....+ ...+...+++|++|++++|.+. ...+. .+. .+++|++
T Consensus 61 ~~~~~~~L~~L~L--~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~---~~~~~-~l~~~~~~L~~ 134 (594)
T 2p1m_B 61 VIRRFPKVRSVEL--KGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVT---DDCLE-LIAKSFKNFKV 134 (594)
T ss_dssp HHHHCTTCCEEEE--ECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCC---HHHHH-HHHHHCTTCCE
T ss_pred HHhhCCCceEEec--cCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEc---HHHHH-HHHHhCCCCcE
Confidence 3567899999999 776532211 1223338899999999999875 33333 454 6899999
Q ss_pred EEcCCC-CCCcC-CChhhcCCCCCCEEECCCCcCcCcCCh---hhhcCCCCCCEEECcCcc--ccccCCccccccCCCCc
Q 003888 79 LYIDNN-DLRGS-LPWCLANMTSLRILDVSSNQLTGSISS---SPLVHLTSIEELMLSNNH--FQIPISLEPLFNHSRLK 151 (788)
Q Consensus 79 L~Ls~n-~l~~~-~~~~l~~l~~L~~L~Ls~n~~~~~i~~---~~l~~l~~L~~L~Ls~n~--l~~~~~~~~l~~l~~L~ 151 (788)
|+|++| .+++. ++..+.++++|++|++++|.+++..+. .....+++|++|++++|. +..........++++|+
T Consensus 135 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~ 214 (594)
T 2p1m_B 135 LVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLK 214 (594)
T ss_dssp EEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCC
T ss_pred EeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCc
Confidence 999999 45533 455556899999999999997743222 123467899999999986 22111111235579999
Q ss_pred EEEccCccccccccccccCCCCcccccEEEccCCCCCC------CCcCccccCCCCCCEE-EcCCCcCCCCCchhHhhcC
Q 003888 152 IFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDG------VTFPKFLYHQHDLEDV-RLSHVNMDGEFPNWLLENN 224 (788)
Q Consensus 152 ~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~l~~~~~L~~L-~l~~~~~~~~~~~~~~~~l 224 (788)
+|++++|......+.. .....+|+.|++ ..+... ..++..+..+++|+.+ .+..... +.++.. ...+
T Consensus 215 ~L~L~~~~~~~~l~~~---~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~-~~~~ 288 (594)
T 2p1m_B 215 SLKLNRAVPLEKLATL---LQRAPQLEELGT-GGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLPAV-YSVC 288 (594)
T ss_dssp EEECCTTSCHHHHHHH---HHHCTTCSEEEC-SBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGG-HHHH
T ss_pred EEecCCCCcHHHHHHH---HhcCCcceEccc-ccccCccchhhHHHHHHHHhcCCCcccccCCcccch-hhHHHH-HHhh
Confidence 9999988322221111 122347888887 333210 1133466788999988 3443322 233333 3568
Q ss_pred CCCCEEEcCCCcccccCc-cCcCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEccc---------CcCCCCCcccc
Q 003888 225 TKLRQLYLVNDSLTGPFR-LPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISM---------NALDSSIPSSF 294 (788)
Q Consensus 225 ~~L~~L~L~~~~l~~~~~-~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~---------n~~~~~~~~~~ 294 (788)
++|++|++++|.+++... ..+..+++|++|++++| +.+.....+...+++|++|++.+ +.+++.....+
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l 367 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH
T ss_pred CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH
Confidence 899999999998765332 23567899999999988 54333344445588999999944 34443322233
Q ss_pred c-CCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEcc--C----ccCCCcCcc-----cCcCCCCCCEEeccCCcCCCc
Q 003888 295 G-NMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALS--N----NNLKGHMFS-----RNFNLTNLRSLQLEGNHLEGE 362 (788)
Q Consensus 295 ~-~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~--~----n~i~~~~~~-----~~~~l~~L~~L~l~~n~l~~~ 362 (788)
. ++++|++|.+..+.+++.....+...+++|++|+++ + +.++....+ .+..+++|+.|++++ .+++.
T Consensus 368 ~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~ 446 (594)
T 2p1m_B 368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK 446 (594)
T ss_dssp HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHH
T ss_pred HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHH
Confidence 3 488999999988888866666666568999999999 4 555532211 245678999999977 66655
Q ss_pred CCccccC-CCCCCEEEccCCcCCCCCcccc-cCCCCCCEEeCCCCcccCCccc-cccCCCCccEEEccCCcCCCCCCCCC
Q 003888 363 IPQSLSK-CSSLEGLYLNNNSLSGKIPRWL-GNLTGLKHIIMPENHLEGPIPV-GFCQLYSLQILDISDNNISGSLPSCF 439 (788)
Q Consensus 363 ~~~~l~~-l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~ 439 (788)
.+..+.. +++|+.|++++|.+++.....+ ..+++|++|++++|.+++.... ....+++|++|++++|.++......+
T Consensus 447 ~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 526 (594)
T 2p1m_B 447 VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLL 526 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHH
T ss_pred HHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHH
Confidence 4445554 8899999999999875555444 5689999999999998644333 33457899999999998743211111
Q ss_pred --CCCCccEEEccCcc
Q 003888 440 --HPLSIEQVHLSKNM 453 (788)
Q Consensus 440 --~~~~L~~L~l~~n~ 453 (788)
..+.++...+..+.
T Consensus 527 ~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 527 GQKMPKLNVEVIDERG 542 (594)
T ss_dssp HHHCTTEEEEEECSSS
T ss_pred HHhCCCCEEEEecCCC
Confidence 14556555554443
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=2.2e-23 Score=213.36 Aligned_cols=205 Identities=25% Similarity=0.262 Sum_probs=112.7
Q ss_pred ccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCC
Q 003888 415 FCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLS 494 (788)
Q Consensus 415 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 494 (788)
+.+++++++++++++.++...+... ..++.|++++|.+.+.. ...|..+++|+.|++++|.+++..+ ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 3444555555555555543322211 23333333333332222 2235566666666666666654322 24566666
Q ss_pred EEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccce
Q 003888 495 HLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENF 574 (788)
Q Consensus 495 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (788)
+|++++|+++ .+|..+..+++|+.|++++|++++..+..|..
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~------------------------------------- 122 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG------------------------------------- 122 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT-------------------------------------
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcC-------------------------------------
Confidence 6666666665 44555566666666666666666554444443
Q ss_pred eeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCccccc
Q 003888 575 EFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGK 654 (788)
Q Consensus 575 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 654 (788)
+++|+.|+|++|++++..+..|..+++|+.|+|++|+++++.+..|..+++|++|++++|+++ .
T Consensus 123 ---------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ 186 (290)
T 1p9a_G 123 ---------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T 186 (290)
T ss_dssp ---------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred ---------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-c
Confidence 235666666666666555555566666666666666666555555566666666666666665 4
Q ss_pred CCccccCCCCCCEEEccCCcCccc
Q 003888 655 IPHQLVELKTLAVFSVAYNNLSGE 678 (788)
Q Consensus 655 ~p~~l~~l~~L~~L~l~~N~l~~~ 678 (788)
+|..+...++|+.+++++|++.|.
T Consensus 187 ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 187 IPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCTTTTTTCCCSEEECCSCCBCCS
T ss_pred cChhhcccccCCeEEeCCCCccCc
Confidence 555555555666666666666543
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=1.2e-22 Score=206.31 Aligned_cols=207 Identities=23% Similarity=0.254 Sum_probs=170.9
Q ss_pred CCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEE
Q 003888 442 LSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLD 521 (788)
Q Consensus 442 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 521 (788)
...+.++++++.+. .+|.. + .+++++|++++|++++..+..|..+++|++|++++|.++...+..|..+++|++|+
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~-~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSN-I--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSC-C--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCCEEEccCCCCC-ccCCC-C--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 35678888888885 45544 2 26788999999998877777888889999999999998877777778889999999
Q ss_pred ccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCC
Q 003888 522 LSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCN 601 (788)
Q Consensus 522 Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n 601 (788)
+++|++.+..+..+.. +++|++|++++|
T Consensus 92 l~~n~l~~~~~~~~~~----------------------------------------------------l~~L~~L~l~~n 119 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQ----------------------------------------------------LVNLAELRLDRN 119 (270)
T ss_dssp CCSSCCCCCCTTTTTT----------------------------------------------------CSSCCEEECCSS
T ss_pred CCCCcCCcCCHhHccc----------------------------------------------------ccCCCEEECCCC
Confidence 9999888666655544 347889999999
Q ss_pred cccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCC
Q 003888 602 KLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPE 681 (788)
Q Consensus 602 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~ 681 (788)
.+++..+..|..+++|++|+|++|+++++.+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+.
T Consensus 120 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 199 (270)
T 2o6q_A 120 QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG 199 (270)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHH
Confidence 99888888888899999999999999888777788899999999999999877777788889999999999999877777
Q ss_pred cccccCCCCccccCCCCCCCCCC
Q 003888 682 WTAQFATFNESSYEGNTFLCGLP 704 (788)
Q Consensus 682 ~~~~~~~~~~~~~~gn~~~c~~~ 704 (788)
.+..+.++..+++.+|||.|+|+
T Consensus 200 ~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 200 AFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTCTTCCEEECCSSCBCCSSS
T ss_pred HhccccCCCEEEecCCCeeCCCc
Confidence 67778888888999999999886
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=9.5e-23 Score=207.23 Aligned_cols=207 Identities=24% Similarity=0.293 Sum_probs=153.0
Q ss_pred CCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEE
Q 003888 393 NLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTL 472 (788)
Q Consensus 393 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 472 (788)
.+++|+.|++++|.+... ..+..+++|++|++++|.+++. + .+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~------------------------~--~l~~l~~L~~L 90 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI------------------------S--ALKELTNLTYL 90 (272)
T ss_dssp HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC------------------------G--GGTTCTTCCEE
T ss_pred cccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc------------------------h--hhcCCCCCCEE
Confidence 345555555555554422 2345556666666666655421 1 15566777777
Q ss_pred EccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCC
Q 003888 473 DLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKP 552 (788)
Q Consensus 473 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (788)
++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..+..+..
T Consensus 91 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--------------- 155 (272)
T 3rfs_A 91 ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK--------------- 155 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---------------
T ss_pred ECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc---------------
Confidence 77777777666666777788888888888887766667778888888888888877665555544
Q ss_pred cccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCC
Q 003888 553 FETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIP 632 (788)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~ 632 (788)
+++|+.|++++|++++..+..++.+++|++|++++|++++..+
T Consensus 156 -------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 156 -------------------------------------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp -------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred -------------------------------------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 3478888888888887777778899999999999999999888
Q ss_pred ccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCCccccc
Q 003888 633 STFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQF 686 (788)
Q Consensus 633 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~ 686 (788)
..+..+++|++|++++|++.+. +++|+.++++.|.++|.+|.+++.+
T Consensus 199 ~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 199 GVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp TTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred HHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence 8899999999999999998754 4578889999999999999876543
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=6.6e-22 Score=202.45 Aligned_cols=205 Identities=25% Similarity=0.194 Sum_probs=149.8
Q ss_pred ccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccE
Q 003888 367 LSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQ 446 (788)
Q Consensus 367 l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~ 446 (788)
+.+++++++++++++.++ .+|..+. +.++.|++++|.+.+..+..|..+++|++|++++|.+++.
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------------ 70 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL------------ 70 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE------------
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc------------
Confidence 556677888888887776 3444333 5777888888887776677777778888888877776532
Q ss_pred EEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCc
Q 003888 447 VHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNN 526 (788)
Q Consensus 447 L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 526 (788)
+. ...+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.++++|+.|++++|+
T Consensus 71 ------------~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~ 135 (290)
T 1p9a_G 71 ------------QV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135 (290)
T ss_dssp ------------EC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC
T ss_pred ------------cC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC
Confidence 11 245677888888888887 566677778888888888888887777778888888888888888
Q ss_pred CCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCccccc
Q 003888 527 LHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGH 606 (788)
Q Consensus 527 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 606 (788)
+.+..+..|.. +++|+.|+|++|++++.
T Consensus 136 l~~~~~~~~~~----------------------------------------------------l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 136 LKTLPPGLLTP----------------------------------------------------TPKLEKLSLANNNLTEL 163 (290)
T ss_dssp CCCCCTTTTTT----------------------------------------------------CTTCCEEECTTSCCSCC
T ss_pred CCccChhhccc----------------------------------------------------ccCCCEEECCCCcCCcc
Confidence 87666555544 34788888888888866
Q ss_pred CcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCccccc
Q 003888 607 IPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGK 654 (788)
Q Consensus 607 ~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 654 (788)
.+..|..+++|+.|+|++|+++. +|..+...++|+.|++++|++.+.
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBCCS
T ss_pred CHHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCCccCc
Confidence 66667778888888888888884 455566677888888888887653
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.2e-21 Score=196.70 Aligned_cols=162 Identities=26% Similarity=0.292 Sum_probs=141.4
Q ss_pred CCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCC
Q 003888 467 SSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNN 546 (788)
Q Consensus 467 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~ 546 (788)
++++.|++++|.+++..+..+.++++|++|++++|.+++..+..|..+++|++|++++|++.+..+..|..
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--------- 105 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDH--------- 105 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT---------
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcc---------
Confidence 57888999999988888888888999999999999998888888888999999999999988766666554
Q ss_pred CCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCc
Q 003888 547 SYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN 626 (788)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~ 626 (788)
+++|+.|+|++|++++..+..|..+++|++|+|++|+
T Consensus 106 -------------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 142 (251)
T 3m19_A 106 -------------------------------------------LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ 142 (251)
T ss_dssp -------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred -------------------------------------------cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc
Confidence 4489999999999997777778999999999999999
Q ss_pred CCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCC
Q 003888 627 LTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIP 680 (788)
Q Consensus 627 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p 680 (788)
++++.+..|+.+++|++|++++|++++..+..+..+++|+.|++++|++.+...
T Consensus 143 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 196 (251)
T 3m19_A 143 LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC 196 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTST
T ss_pred CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCcc
Confidence 998888889999999999999999998878889999999999999999998633
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=9.8e-22 Score=199.73 Aligned_cols=204 Identities=23% Similarity=0.243 Sum_probs=149.9
Q ss_pred CccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEcc
Q 003888 420 SLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILG 499 (788)
Q Consensus 420 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 499 (788)
.+..+++..+.+.+. .....+.+++.|++.+|.+.. ++ .+..+++|++|++++|.+++. ..+..+++|++|+++
T Consensus 20 ~l~~l~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~-~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA-VTQNELNSIDQIIANNSDIKS-VQ--GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHTCSCTTSE-ECHHHHTTCCEEECTTSCCCC-CT--TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred HHHHHHhcCcccccc-cccccccceeeeeeCCCCccc-cc--ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence 344455555554432 112235678888888887642 22 267778888888888888753 367778888888888
Q ss_pred CCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeec
Q 003888 500 HNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTK 579 (788)
Q Consensus 500 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (788)
+|.+++..+..+..+++|++|++++|++.+..+..+..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------------------------------------------ 131 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK------------------------------------------ 131 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT------------------------------------------
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhcc------------------------------------------
Confidence 88888777777788888888888888887666655544
Q ss_pred cceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccc
Q 003888 580 NIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQL 659 (788)
Q Consensus 580 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 659 (788)
+++|+.|++++|.+++..+..++.+++|++|++++|++++..+..|+.+++|++|++++|++++..|..+
T Consensus 132 ----------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 201 (272)
T 3rfs_A 132 ----------LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF 201 (272)
T ss_dssp ----------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred ----------CCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHH
Confidence 3478888888888887777777888888888888888887777777888888888888888887777777
Q ss_pred cCCCCCCEEEccCCcCcccCCC
Q 003888 660 VELKTLAVFSVAYNNLSGEIPE 681 (788)
Q Consensus 660 ~~l~~L~~L~l~~N~l~~~~p~ 681 (788)
..+++|+.|++++|++.|.+|.
T Consensus 202 ~~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 202 DRLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp TTCTTCCEEECCSSCBCCCTTT
T ss_pred hCCcCCCEEEccCCCccccCcH
Confidence 8888888888888888876663
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=3.3e-21 Score=193.38 Aligned_cols=183 Identities=23% Similarity=0.298 Sum_probs=165.7
Q ss_pred CCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCC
Q 003888 467 SSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNN 546 (788)
Q Consensus 467 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~ 546 (788)
...++++++++.++ .+|..+. ++++.|++++|.+++..+..|.++++|++|++++|.+.+..+..+..
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--------- 81 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD--------- 81 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT---------
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhcc---------
Confidence 45788999999998 4565554 68999999999999888889999999999999999999877776665
Q ss_pred CCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCc
Q 003888 547 SYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN 626 (788)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~ 626 (788)
+++|+.|++++|++++..+..|..+++|++|+|++|+
T Consensus 82 -------------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 118 (251)
T 3m19_A 82 -------------------------------------------LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118 (251)
T ss_dssp -------------------------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred -------------------------------------------CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCc
Confidence 4589999999999998888889999999999999999
Q ss_pred CCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCCcccccCCCCccccCCCCCCCC-CC
Q 003888 627 LTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCG-LP 704 (788)
Q Consensus 627 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~gn~~~c~-~~ 704 (788)
++++.+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+.++..+++.+|++.|+ |.
T Consensus 119 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 197 (251)
T 3m19_A 119 LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCE 197 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTT
T ss_pred CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccc
Confidence 9998888899999999999999999987777899999999999999999988888888899999999999999998 54
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=8.9e-23 Score=216.80 Aligned_cols=87 Identities=20% Similarity=0.239 Sum_probs=40.2
Q ss_pred cccEEECCCCccccc----CcccccC-cccCCeEeCCCCcCCccCC----ccccCCCCCCEEECcCCcccccC-------
Q 003888 592 LLSGLDLSCNKLIGH----IPPQIGN-LTRIQTLNLSHNNLTGLIP----STFSNLKHIESLDLSYNKLNGKI------- 655 (788)
Q Consensus 592 ~L~~L~Ls~n~l~~~----~~~~l~~-l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~------- 655 (788)
+|+.|||++|.+++. ++..+.. .++|++|+|++|++++..+ ..+..+++|++|++++|.+.+..
T Consensus 197 ~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l 276 (362)
T 3goz_A 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL 276 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHH
T ss_pred CCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHH
Confidence 444555555554432 2223333 2355555555555554322 22344455555555555533221
Q ss_pred CccccCCCCCCEEEccCCcCccc
Q 003888 656 PHQLVELKTLAVFSVAYNNLSGE 678 (788)
Q Consensus 656 p~~l~~l~~L~~L~l~~N~l~~~ 678 (788)
+..+..+++|+.||+++|++...
T Consensus 277 ~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 277 GAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHhccCCceEEEecCCCcCCCc
Confidence 22344455555555655555543
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=6.6e-21 Score=189.73 Aligned_cols=78 Identities=19% Similarity=0.233 Sum_probs=35.0
Q ss_pred ccc-EEECCCCcccccCcccccCcccCCeEeCCCCc-CCccCCccccCC-CCCCEEECcCCcccccCCccccCCCCCCEE
Q 003888 592 LLS-GLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN-LTGLIPSTFSNL-KHIESLDLSYNKLNGKIPHQLVELKTLAVF 668 (788)
Q Consensus 592 ~L~-~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 668 (788)
+|+ .|++++|+++...+..|.. ++|++|++++|+ ++++.+..|.++ ++|++|++++|++++ +|.. .+++|+.|
T Consensus 156 ~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L 231 (239)
T 2xwt_C 156 NETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKEL 231 (239)
T ss_dssp SSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEE
T ss_pred cceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCcee
Confidence 344 4444444444222222332 445555555552 554444455555 555555555555542 2222 34445555
Q ss_pred EccCC
Q 003888 669 SVAYN 673 (788)
Q Consensus 669 ~l~~N 673 (788)
+++++
T Consensus 232 ~l~~~ 236 (239)
T 2xwt_C 232 IARNT 236 (239)
T ss_dssp ECTTC
T ss_pred eccCc
Confidence 55443
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=8.8e-21 Score=188.85 Aligned_cols=200 Identities=18% Similarity=0.197 Sum_probs=160.4
Q ss_pred CccEEEccCcccccccCcccccCCCCCcEEEccCCc-CCCCCCccccCCCCCCEEEccC-CcCccccCcccCCCCCCCEE
Q 003888 443 SIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNR-LNGSIPNWVDGLSQLSHLILGH-NNLEGEVPVQLCELNQLQLL 520 (788)
Q Consensus 443 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L 520 (788)
+++.|++++|.+. .++...|..+++|++|++++|+ ++...+..|.++++|++|++++ |++++..+..|.++++|++|
T Consensus 32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 4555555555553 3444458889999999999997 8877777899999999999998 99998878889999999999
Q ss_pred EccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCC
Q 003888 521 DLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSC 600 (788)
Q Consensus 521 ~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~ 600 (788)
++++|++.+ +|. +...+ .+..|+.|++++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~-------------------------------------------------~L~~L~~L~l~~ 139 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVY-------------------------------------------------STDIFFILEITD 139 (239)
T ss_dssp EEEEECCCS-CCC-CTTCC-------------------------------------------------BCCSEEEEEEES
T ss_pred eCCCCCCcc-ccc-ccccc-------------------------------------------------ccccccEEECCC
Confidence 999999886 343 43321 012244999999
Q ss_pred C-cccccCcccccCcccCC-eEeCCCCcCCccCCccccCCCCCCEEECcCCc-ccccCCccccCC-CCCCEEEccCCcCc
Q 003888 601 N-KLIGHIPPQIGNLTRIQ-TLNLSHNNLTGLIPSTFSNLKHIESLDLSYNK-LNGKIPHQLVEL-KTLAVFSVAYNNLS 676 (788)
Q Consensus 601 n-~l~~~~~~~l~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~L~l~~N~l~ 676 (788)
| .+++..+..|.++++|+ +|++++|+++.+.+..|.. ++|++|++++|+ ++...+..|..+ ++|+.|++++|+++
T Consensus 140 N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 140 NPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp CTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 9 99988888899999999 9999999999777777777 899999999995 997778889999 99999999999999
Q ss_pred ccCCCcccccCCCCccccCCCC
Q 003888 677 GEIPEWTAQFATFNESSYEGNT 698 (788)
Q Consensus 677 ~~~p~~~~~~~~~~~~~~~gn~ 698 (788)
+..+. .+..+..+.+.++.
T Consensus 219 ~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 219 ALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp CCCCT---TCTTCSEEECTTC-
T ss_pred cCChh---HhccCceeeccCcc
Confidence 65443 56666666666543
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=1.5e-21 Score=207.29 Aligned_cols=183 Identities=17% Similarity=0.142 Sum_probs=111.9
Q ss_pred EEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCc----ccccCCC-CCCEEEcCCCCCCcCCChhhcCC-
Q 003888 24 LDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILD----QGLCSLM-HLQELYIDNNDLRGSLPWCLANM- 97 (788)
Q Consensus 24 L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~~~~l~~l- 97 (788)
+++ +++.+++.+++.+. ..++|++|++++|.+ ...+. +++.+++ +|++|+|++|++++..+..+..+
T Consensus 3 ~~l--s~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l----~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 75 (362)
T 3goz_A 3 YKL--TLHPGSNPVEEFTS-IPHGVTSLDLSLNNL----YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQIL 75 (362)
T ss_dssp EEC--CCCTTCCHHHHHHT-SCTTCCEEECTTSCG----GGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHH
T ss_pred ccc--ccccchHHHHHHHh-CCCCceEEEccCCCC----ChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHH
Confidence 456 77788877777666 666688888888887 34443 4667777 78888888888887766666664
Q ss_pred ----CCCCEEECCCCcCcCcCChhh----hcCC-CCCCEEECcCccccccCCccc----ccc-CCCCcEEEccCcccccc
Q 003888 98 ----TSLRILDVSSNQLTGSISSSP----LVHL-TSIEELMLSNNHFQIPISLEP----LFN-HSRLKIFDAANNEIKAE 163 (788)
Q Consensus 98 ----~~L~~L~Ls~n~~~~~i~~~~----l~~l-~~L~~L~Ls~n~l~~~~~~~~----l~~-l~~L~~L~l~~n~~~~~ 163 (788)
++|++|+|++|.+++ .+... +..+ ++|++|++++|.+++. +... +.. .++|++|++++|.+.+.
T Consensus 76 ~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 153 (362)
T 3goz_A 76 AAIPANVTSLNLSGNFLSY-KSSDELVKTLAAIPFTITVLDLGWNDFSSK-SSSEFKQAFSNLPASITSLNLRGNDLGIK 153 (362)
T ss_dssp HTSCTTCCEEECCSSCGGG-SCHHHHHHHHHTSCTTCCEEECCSSCGGGS-CHHHHHHHHTTSCTTCCEEECTTSCGGGS
T ss_pred hccCCCccEEECcCCcCCh-HHHHHHHHHHHhCCCCccEEECcCCcCCcH-HHHHHHHHHHhCCCceeEEEccCCcCCHH
Confidence 888888888888873 33322 3344 7888888888887633 2222 223 35777777777766532
Q ss_pred ccccccCCCCcccccEEEccCCCCCCCCcCccccCCC-CCCEEEcCCCcCCCCCchhHh---hcC-CCCCEEEcCCCccc
Q 003888 164 ITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQH-DLEDVRLSHVNMDGEFPNWLL---ENN-TKLRQLYLVNDSLT 238 (788)
Q Consensus 164 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~---~~l-~~L~~L~L~~~~l~ 238 (788)
... .++..+...+ +|++|++++|.+.+..+..+. ..+ ++|++|++++|.++
T Consensus 154 ~~~------------------------~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 154 SSD------------------------ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp CHH------------------------HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHH------------------------HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 111 1222333333 666666666666655544321 223 35555555555554
Q ss_pred c
Q 003888 239 G 239 (788)
Q Consensus 239 ~ 239 (788)
+
T Consensus 210 ~ 210 (362)
T 3goz_A 210 L 210 (362)
T ss_dssp G
T ss_pred h
Confidence 3
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=5.8e-23 Score=220.63 Aligned_cols=245 Identities=18% Similarity=0.224 Sum_probs=152.9
Q ss_pred CccccCCCCCCEEEccCCcCCCCCc----ccccCCCCCCEEeCCCCcc---cCCcccc-------ccCCCCccEEEccCC
Q 003888 364 PQSLSKCSSLEGLYLNNNSLSGKIP----RWLGNLTGLKHIIMPENHL---EGPIPVG-------FCQLYSLQILDISDN 429 (788)
Q Consensus 364 ~~~l~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~l~~n~~---~~~~~~~-------~~~l~~L~~L~l~~n 429 (788)
+..+..+++|++|++++|.++...+ ..+..+++|++|++++|.+ .+.+|.. +..+++|++|++++|
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 3444455555555555555543322 2244555666666655432 2223333 256667777777776
Q ss_pred cCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCcccc----CC---------CCCCEE
Q 003888 430 NISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVD----GL---------SQLSHL 496 (788)
Q Consensus 430 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~----~l---------~~L~~L 496 (788)
.+..... ..++.. +..+++|++|++++|.+++..+..+. .+ ++|++|
T Consensus 105 ~l~~~~~-------------------~~l~~~-l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L 164 (386)
T 2ca6_A 105 AFGPTAQ-------------------EPLIDF-LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI 164 (386)
T ss_dssp CCCTTTH-------------------HHHHHH-HHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred cCCHHHH-------------------HHHHHH-HHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEE
Confidence 6653110 011111 45566777777777766533332222 22 677777
Q ss_pred EccCCcCc-cccC---cccCCCCCCCEEEccCCcCCC-----CCCCCCcCcccccccCCCCCCCCcccccccccccchhh
Q 003888 497 ILGHNNLE-GEVP---VQLCELNQLQLLDLSNNNLHG-----PIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAE 567 (788)
Q Consensus 497 ~L~~n~l~-~~~~---~~l~~l~~L~~L~Ls~n~i~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (788)
++++|+++ ...+ ..+..+++|+.|++++|++.. ..+..+.
T Consensus 165 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~------------------------------- 213 (386)
T 2ca6_A 165 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA------------------------------- 213 (386)
T ss_dssp ECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG-------------------------------
T ss_pred ECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh-------------------------------
Confidence 77777776 2223 345667788888888887641 0111111
Q ss_pred hccccceeeeeccceeeecccccccccEEECCCCccc----ccCcccccCcccCCeEeCCCCcCCcc----CCcccc--C
Q 003888 568 KQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLI----GHIPPQIGNLTRIQTLNLSHNNLTGL----IPSTFS--N 637 (788)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~l~~l~~L~~L~Ls~N~l~~~----~~~~~~--~ 637 (788)
.+++|+.|+|++|.++ ..+|..+..+++|+.|+|++|++++. ++..+. .
T Consensus 214 ---------------------~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 272 (386)
T 2ca6_A 214 ---------------------YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE 272 (386)
T ss_dssp ---------------------GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCS
T ss_pred ---------------------cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhcc
Confidence 1457888888888885 56777888889999999999998865 455563 3
Q ss_pred CCCCCEEECcCCcccc----cCCccc-cCCCCCCEEEccCCcCcccCC
Q 003888 638 LKHIESLDLSYNKLNG----KIPHQL-VELKTLAVFSVAYNNLSGEIP 680 (788)
Q Consensus 638 l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~l~~N~l~~~~p 680 (788)
+++|++|+|++|.+++ .+|..+ .++++|++|++++|++++..+
T Consensus 273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 8899999999999987 477776 568999999999999987664
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=4.2e-21 Score=199.26 Aligned_cols=57 Identities=30% Similarity=0.458 Sum_probs=36.5
Q ss_pred ccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCccc
Q 003888 591 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 652 (788)
Q Consensus 591 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 652 (788)
++|++|++++|+++ .+|..+. ++|++|+|++|+++++ |. +..+++|++|++++|+++
T Consensus 251 ~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 251 SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 35666666666666 4455443 5777777777777754 22 566677777777777775
No 89
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=9.2e-21 Score=185.43 Aligned_cols=194 Identities=23% Similarity=0.339 Sum_probs=146.3
Q ss_pred cEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCC
Q 003888 470 VTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYS 549 (788)
Q Consensus 470 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~ 549 (788)
+.++++++.++. +|..+. ++|+.|++++|++++..+..|..+++|+.|++++|++.+..|..|..
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~------------ 78 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG------------ 78 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT------------
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC------------
Confidence 678999998884 555443 68999999999999887778999999999999999988777776665
Q ss_pred CCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCc
Q 003888 550 LKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTG 629 (788)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 629 (788)
+++|++|+|++|.+++..+..|..+++|++|+|++|++++
T Consensus 79 ----------------------------------------l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~ 118 (220)
T 2v9t_B 79 ----------------------------------------LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC 118 (220)
T ss_dssp ----------------------------------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred ----------------------------------------CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCE
Confidence 3488889999999887766778888899999999999988
Q ss_pred cCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCC-CcccccCCCCccccCCCCCCCCCCCCCC
Q 003888 630 LIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIP-EWTAQFATFNESSYEGNTFLCGLPLPIC 708 (788)
Q Consensus 630 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p-~~~~~~~~~~~~~~~gn~~~c~~~l~~c 708 (788)
+.|..|..+++|++|+|++|++++..+..|..+++|+.|++++|++.|... .|+..+ +..++..- ....|
T Consensus 119 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~~l~~~-------l~~~~~~~--~~~~C 189 (220)
T 2v9t_B 119 LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADY-------LHTNPIET--SGARC 189 (220)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHH-------HHHCCCBC--SCCBE
T ss_pred eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccHHHHHH-------HHhCCCCc--cCCCc
Confidence 888888888999999999999887777778888888888888888886433 111111 11111110 11268
Q ss_pred CCCCCCCcccCCCCCCCCc
Q 003888 709 RSPATMSEASIGNERDDNL 727 (788)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~ 727 (788)
..|....++.+.....+++
T Consensus 190 ~~P~~l~g~~l~~l~~~~~ 208 (220)
T 2v9t_B 190 TSPRRLANKRIGQIKSKKF 208 (220)
T ss_dssp EESGGGTTCBGGGSCGGGC
T ss_pred CCchHHcCCchhhCCHHHC
Confidence 8888888876665554443
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=1.1e-20 Score=195.95 Aligned_cols=228 Identities=19% Similarity=0.191 Sum_probs=174.2
Q ss_pred CCCCEEEcCCCcCCCCCchhH--hhcCCCCCEEEcCCCcccccCccCc--CCCCCccEEEcccCcCcccCC----hhhhh
Q 003888 200 HDLEDVRLSHVNMDGEFPNWL--LENNTKLRQLYLVNDSLTGPFRLPI--HSHRWLRFLDVSNNNFQGHIP----VEIGD 271 (788)
Q Consensus 200 ~~L~~L~l~~~~~~~~~~~~~--~~~l~~L~~L~L~~~~l~~~~~~~l--~~~~~L~~L~L~~n~i~~~~~----~~~~~ 271 (788)
..++.+.+.++.+.......+ ...+++|++|++++|.+++..+..+ ..+++|++|++++|.+++..+ ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~- 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW- 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-
Confidence 356778888777654221111 1245779999999999998888887 889999999999999986555 2223
Q ss_pred cCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCc--cch-HHHhcCCCCCEEEccCccCCCcCcc---cCcC
Q 003888 272 ILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGE--IPE-HLAVSCVNLEFLALSNNNLKGHMFS---RNFN 345 (788)
Q Consensus 272 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~--i~~-~~~~~l~~L~~L~L~~n~i~~~~~~---~~~~ 345 (788)
.+++|++|++++|.+.+..+..|+++++|++|++++|++.+. ++. .....+++|++|++++|+++..... .+..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 478999999999999988888999999999999999987632 222 2224688899999999998754322 2456
Q ss_pred CCCCCEEeccCCcCCCcCCccccCC---CCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCcc
Q 003888 346 LTNLRSLQLEGNHLEGEIPQSLSKC---SSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQ 422 (788)
Q Consensus 346 l~~L~~L~l~~n~l~~~~~~~l~~l---~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 422 (788)
+++|++|++++|++++..|..+..+ ++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 7899999999999987777777766 68999999999888 5566553 7888999999988864 32 56778888
Q ss_pred EEEccCCcCCC
Q 003888 423 ILDISDNNISG 433 (788)
Q Consensus 423 ~L~l~~n~~~~ 433 (788)
.|++++|++++
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 88888888764
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=8.9e-22 Score=211.39 Aligned_cols=254 Identities=17% Similarity=0.239 Sum_probs=154.0
Q ss_pred hhHHHhhcCCCCcEEeCCCCCCCCCCCCCC---cccccCCCCCCEEEcCCCC---CCcCCChhh-------cCCCCCCEE
Q 003888 37 FLQIIRESMPSLKYLSMSDSTLGTNSSRIL---DQGLCSLMHLQELYIDNND---LRGSLPWCL-------ANMTSLRIL 103 (788)
Q Consensus 37 ~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~---~~~~~~l~~L~~L~Ls~n~---l~~~~~~~l-------~~l~~L~~L 103 (788)
++..+. .+++|++|+|++|.++ ...+ ...+.++++|++|+|++|. +++.+|..+ ..+++|++|
T Consensus 24 l~~~l~-~~~~L~~L~L~~n~i~---~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 24 VFAVLL-EDDSVKEIVLSGNTIG---TEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp TSHHHH-HCSCCCEEECTTSEEC---HHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHh-cCCCccEEECCCCCCC---HHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEE
Confidence 456677 7888888888888874 2211 1246678888888888864 334445444 677888888
Q ss_pred ECCCCcCcC----cCChhhhcCCCCCCEEECcCccccccCCc---cccccCCCCcEEEccCccccccccccccCCCCccc
Q 003888 104 DVSSNQLTG----SISSSPLVHLTSIEELMLSNNHFQIPISL---EPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQ 176 (788)
Q Consensus 104 ~Ls~n~~~~----~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~---~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 176 (788)
+|++|.+.+ .+|. .+.++++|++|++++|.+....+. ..+..+ ..+.+.
T Consensus 100 ~Ls~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l--------~~~~~~--------------- 155 (386)
T 2ca6_A 100 RLSDNAFGPTAQEPLID-FLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL--------AVNKKA--------------- 155 (386)
T ss_dssp ECCSCCCCTTTHHHHHH-HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHH--------HHHHHH---------------
T ss_pred ECCCCcCCHHHHHHHHH-HHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHH--------hhhhhc---------------
Confidence 888888774 2554 567777888888887776522110 011111 000000
Q ss_pred ccEEEccCCCCCCCCcCccccCCCCCCEEEcCCCcCCC-CCch--hHhhcCCCCCEEEcCCCcccc-----cCccCcCCC
Q 003888 177 LQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDG-EFPN--WLLENNTKLRQLYLVNDSLTG-----PFRLPIHSH 248 (788)
Q Consensus 177 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~--~~~~~l~~L~~L~L~~~~l~~-----~~~~~l~~~ 248 (788)
...++|++|++++|.+.. .++. ..+..+++|++|++++|.++. ..+..+..+
T Consensus 156 --------------------~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~ 215 (386)
T 2ca6_A 156 --------------------KNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC 215 (386)
T ss_dssp --------------------HTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC
T ss_pred --------------------ccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcC
Confidence 000455555555555542 2221 123456677777777776652 223356667
Q ss_pred CCccEEEcccCcCc----ccCChhhhhcCCCCcEEEcccCcCCCC----Cccccc--CCCCCCEEEcccCcCCC----cc
Q 003888 249 RWLRFLDVSNNNFQ----GHIPVEIGDILPSLISFNISMNALDSS----IPSSFG--NMNFLQILDLSNNQLTG----EI 314 (788)
Q Consensus 249 ~~L~~L~L~~n~i~----~~~~~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~--~l~~L~~L~l~~n~i~~----~i 314 (788)
++|+.|++++|.++ +.+|..+.. +++|++|++++|.+++. ++..+. .+++|++|++++|.+++ .+
T Consensus 216 ~~L~~L~Ls~n~l~~~g~~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l 294 (386)
T 2ca6_A 216 QELKVLDLQDNTFTHLGSSALAIALKS-WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 294 (386)
T ss_dssp TTCCEEECCSSCCHHHHHHHHHHHGGG-CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH
T ss_pred CCccEEECcCCCCCcHHHHHHHHHHcc-CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHH
Confidence 77777777777774 344444433 67777777777777654 344553 37778888888888774 27
Q ss_pred chHHHhcCCCCCEEEccCccCCCcC
Q 003888 315 PEHLAVSCVNLEFLALSNNNLKGHM 339 (788)
Q Consensus 315 ~~~~~~~l~~L~~L~L~~n~i~~~~ 339 (788)
|..++.++++|++|++++|.+++..
T Consensus 295 ~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 295 KTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHhcCCCceEEEccCCcCCcch
Confidence 7766556777777777777777644
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=6.1e-22 Score=208.65 Aligned_cols=89 Identities=17% Similarity=0.116 Sum_probs=45.3
Q ss_pred cccEEECCCCc-ccccCcccccCcccCCeEeCCCCc-CCccCCccccCCCCCCEEECcCCcccccCCccccCC-CCCCEE
Q 003888 592 LLSGLDLSCNK-LIGHIPPQIGNLTRIQTLNLSHNN-LTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL-KTLAVF 668 (788)
Q Consensus 592 ~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L 668 (788)
+|+.|++++|. +++..+..+..+++|++|++++|. +.......++.+++|++|++++| ++.. .+..+ ..++.|
T Consensus 223 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L 298 (336)
T 2ast_B 223 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHL 298 (336)
T ss_dssp TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTS
T ss_pred CCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcce
Confidence 44444444444 333444455556666666666663 22221124556666666666666 3221 22222 224445
Q ss_pred EccCCcCcccCCCccc
Q 003888 669 SVAYNNLSGEIPEWTA 684 (788)
Q Consensus 669 ~l~~N~l~~~~p~~~~ 684 (788)
++++|++++..|.+++
T Consensus 299 ~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 299 QINCSHFTTIARPTIG 314 (336)
T ss_dssp EESCCCSCCTTCSSCS
T ss_pred EEecccCccccCCccc
Confidence 5677777776666543
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=1e-20 Score=199.21 Aligned_cols=101 Identities=15% Similarity=0.144 Sum_probs=48.7
Q ss_pred CcEEeCCCCCCCCCCCCCCcccccCC--CCCCEEEcCCCCCCcCCChhhcCCCCCCEEECCCCcCcCc-CChhhhcCCCC
Q 003888 48 LKYLSMSDSTLGTNSSRILDQGLCSL--MHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGS-ISSSPLVHLTS 124 (788)
Q Consensus 48 L~~L~Ls~~~l~~~~~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~-i~~~~l~~l~~ 124 (788)
++.++++++.+. +..+..+ +++++|++++|.+.+..+. +..+++|++|++++|.+++. ++. .+.++++
T Consensus 49 ~~~l~l~~~~~~-------~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~-~~~~~~~ 119 (336)
T 2ast_B 49 WQTLDLTGKNLH-------PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHG-ILSQCSK 119 (336)
T ss_dssp SSEEECTTCBCC-------HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHH-HHTTBCC
T ss_pred heeeccccccCC-------HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHH-HHhhCCC
Confidence 555555555442 1233444 5555555555555544333 33455555555555555432 333 4555555
Q ss_pred CCEEECcCccccccCCccccccCCCCcEEEccCc
Q 003888 125 IEELMLSNNHFQIPISLEPLFNHSRLKIFDAANN 158 (788)
Q Consensus 125 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n 158 (788)
|++|++++|.+.+..+ ..++.+++|++|++++|
T Consensus 120 L~~L~L~~~~l~~~~~-~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIV-NTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp CSEEECTTCBCCHHHH-HHHTTCTTCSEEECTTC
T ss_pred CCEEeCcCcccCHHHH-HHHhcCCCCCEEECCCC
Confidence 5555555555442222 23444445555544444
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=4.6e-20 Score=190.76 Aligned_cols=57 Identities=18% Similarity=0.325 Sum_probs=29.5
Q ss_pred cccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCccc
Q 003888 592 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 652 (788)
Q Consensus 592 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 652 (788)
+|+.|++++|.+++..+ +..+++|++|++++|++++.. .+..+++|++|++++|+++
T Consensus 174 ~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 174 KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp TCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred CCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 44444555544443222 455555555555555555443 2555555555555555554
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=3.9e-20 Score=195.34 Aligned_cols=244 Identities=18% Similarity=0.128 Sum_probs=171.3
Q ss_pred CEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCcc-ccccCCCCccE-EEcc
Q 003888 350 RSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIP-VGFCQLYSLQI-LDIS 427 (788)
Q Consensus 350 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~-L~l~ 427 (788)
+.++.++++++ .+|..+ .+++++|++++|+++...+..|.++++|++|++++|++.+.++ .+|.+++++++ +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 46677777777 556544 2467778888777775555567777777777777777654333 45666666554 3444
Q ss_pred CCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccC-CcCccc
Q 003888 428 DNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGH-NNLEGE 506 (788)
Q Consensus 428 ~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~ 506 (788)
+|+++ .++..+|..+++|++|++++|+++...+..+....++..|++.+ +++...
T Consensus 89 ~N~l~------------------------~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l 144 (350)
T 4ay9_X 89 ANNLL------------------------YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI 144 (350)
T ss_dssp ETTCC------------------------EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEE
T ss_pred CCccc------------------------ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccc
Confidence 45554 34444588889999999999999877666666777788888865 567766
Q ss_pred cCcccCCCC-CCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeee
Q 003888 507 VPVQLCELN-QLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIY 585 (788)
Q Consensus 507 ~~~~l~~l~-~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (788)
.+..|..+. .++.|++++|+++.+.+..|..
T Consensus 145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~------------------------------------------------ 176 (350)
T 4ay9_X 145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNG------------------------------------------------ 176 (350)
T ss_dssp CTTSSTTSBSSCEEEECCSSCCCEECTTSSTT------------------------------------------------
T ss_pred cccchhhcchhhhhhccccccccCCChhhccc------------------------------------------------
Confidence 666777765 5888999999987655544432
Q ss_pred cccccccccEEECCC-CcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCC
Q 003888 586 QGKVLSLLSGLDLSC-NKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKT 664 (788)
Q Consensus 586 ~~~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 664 (788)
.+|+.|++++ |.++.+.+..|..+++|++|+|++|+|+.+.+..|. +|+.|.+.++.-...+| .+.++++
T Consensus 177 -----~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP-~l~~l~~ 247 (350)
T 4ay9_X 177 -----TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLP-TLEKLVA 247 (350)
T ss_dssp -----EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCC-CTTTCCS
T ss_pred -----cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCC-CchhCcC
Confidence 3688899875 566655556789999999999999999987666654 45556555554444666 4788899
Q ss_pred CCEEEccCCcCcc
Q 003888 665 LAVFSVAYNNLSG 677 (788)
Q Consensus 665 L~~L~l~~N~l~~ 677 (788)
|+.++++++.-.+
T Consensus 248 L~~l~l~~~~~c~ 260 (350)
T 4ay9_X 248 LMEASLTYPSHCC 260 (350)
T ss_dssp CCEEECSCHHHHH
T ss_pred hhhCcCCCCcccc
Confidence 9999998765433
No 96
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=6.5e-20 Score=189.63 Aligned_cols=196 Identities=21% Similarity=0.338 Sum_probs=156.2
Q ss_pred ccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCc
Q 003888 391 LGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLV 470 (788)
Q Consensus 391 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 470 (788)
+..+++|++|++++|.+... + .+..+++|++|++++|.+.+. +. +..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~------------------------~~--~~~l~~L~ 88 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDL------------------------AP--LKNLTKIT 88 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC------------------------GG--GTTCCSCC
T ss_pred HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCC------------------------hh--HccCCCCC
Confidence 34567777777777777643 3 466777777777777766532 22 66788999
Q ss_pred EEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCC
Q 003888 471 TLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSL 550 (788)
Q Consensus 471 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~ 550 (788)
+|++++|++++. ..+..+++|++|++++|++++.. .+..+++|+.|++++|++.+..+ +..
T Consensus 89 ~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~------------- 149 (308)
T 1h6u_A 89 ELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAG------------- 149 (308)
T ss_dssp EEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGG-------------
T ss_pred EEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccC-------------
Confidence 999999998853 35888999999999999998643 38899999999999998875432 221
Q ss_pred CCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCcc
Q 003888 551 KPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGL 630 (788)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 630 (788)
+++|+.|++++|.+++..+ +..+++|+.|++++|++++.
T Consensus 150 ---------------------------------------l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 150 ---------------------------------------LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp ---------------------------------------CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred ---------------------------------------CCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcC
Confidence 5689999999999986443 89999999999999999987
Q ss_pred CCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCccc
Q 003888 631 IPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGE 678 (788)
Q Consensus 631 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 678 (788)
.+ +..+++|++|++++|++++.. .+..+++|+.|++++|++++.
T Consensus 189 ~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 189 SP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp GG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred hh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecC
Confidence 54 889999999999999998655 388999999999999999863
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=3e-19 Score=188.50 Aligned_cols=243 Identities=19% Similarity=0.164 Sum_probs=159.5
Q ss_pred cEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCE-EEc
Q 003888 252 RFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEF-LAL 330 (788)
Q Consensus 252 ~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~-L~L 330 (788)
++++.++++++ .+|..+ .+++++|+|++|+++.+.+.+|+++++|++|++++|++.+.+|...+.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 56778888887 777665 3578888888888876666678888888888888888765677666666666654 444
Q ss_pred cCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccC-CcCCCCCcccccCCCCCCEEeCCCCcccC
Q 003888 331 SNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNN-NSLSGKIPRWLGNLTGLKHIIMPENHLEG 409 (788)
Q Consensus 331 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~l~~n~~~~ 409 (788)
..|+++.+.+..|..+++|++|++++|+++...+..+....++..+++.+ +.+....+..|..+.
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~-------------- 153 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS-------------- 153 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB--------------
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc--------------
Confidence 55666666666666666666666666666654444444445555555544 233322222333321
Q ss_pred CccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccC
Q 003888 410 PIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDG 489 (788)
Q Consensus 410 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 489 (788)
..++.|++++|+++.+.+..+...+++++.+.++...+.++..+|..+++|+.||+++|+++...+..
T Consensus 154 ---------~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~--- 221 (350)
T 4ay9_X 154 ---------FESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG--- 221 (350)
T ss_dssp ---------SSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---
T ss_pred ---------hhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---
Confidence 23555666666665555555555566666666544446777777899999999999999998654443
Q ss_pred CCCCCEEEccCCcCccccCcccCCCCCCCEEEccCC
Q 003888 490 LSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNN 525 (788)
Q Consensus 490 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 525 (788)
+.+|+.|.+.++.-....| .+..+++|+.++++++
T Consensus 222 ~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 222 LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 4567777766554333555 4788999999999764
No 98
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=5e-20 Score=180.22 Aligned_cols=191 Identities=23% Similarity=0.294 Sum_probs=151.7
Q ss_pred CcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccC-cccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCC
Q 003888 469 LVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVP-VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNS 547 (788)
Q Consensus 469 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~ 547 (788)
-+.+++++|.++. +|..+. +.+++|++++|++++..+ ..|..+++|+.|++++|++++..+..|..
T Consensus 13 ~~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~---------- 79 (220)
T 2v70_A 13 GTTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG---------- 79 (220)
T ss_dssp TTEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT----------
T ss_pred CCEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC----------
Confidence 3689999999985 565443 567999999999997754 56889999999999999998777766665
Q ss_pred CCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcC
Q 003888 548 YSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNL 627 (788)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l 627 (788)
+++|+.|+|++|.+++..+..|..+++|++|+|++|+|
T Consensus 80 ------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 117 (220)
T 2v70_A 80 ------------------------------------------ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI 117 (220)
T ss_dssp ------------------------------------------CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCC
T ss_pred ------------------------------------------CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcC
Confidence 44899999999999988888899999999999999999
Q ss_pred CccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCC-cccccCCCCccccCCCCCCCCCCCC
Q 003888 628 TGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPE-WTAQFATFNESSYEGNTFLCGLPLP 706 (788)
Q Consensus 628 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~~~~~~~~~~~gn~~~c~~~l~ 706 (788)
+++.|..|.++++|++|+|++|++++..|..|..+++|+.|++++|++.|..+- |+..+..-.. ...+++
T Consensus 118 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~~~~-~~~~~~-------- 188 (220)
T 2v70_A 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKR-IVTGNP-------- 188 (220)
T ss_dssp CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHHHSC-CBCCCC--------
T ss_pred CeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHHhcC-ccccCC--------
Confidence 999999999999999999999999988899999999999999999999987652 2222111000 122332
Q ss_pred CCCCCCCCCcccCCCCC
Q 003888 707 ICRSPATMSEASIGNER 723 (788)
Q Consensus 707 ~c~~~~~~~~~~~~~~~ 723 (788)
.|..|...++..+....
T Consensus 189 ~C~~P~~l~g~~l~~l~ 205 (220)
T 2v70_A 189 RCQKPYFLKEIPIQDVA 205 (220)
T ss_dssp EEEESGGGTTEEGGGSC
T ss_pred ccCCChHHCCCChhhCC
Confidence 57777776666544443
No 99
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=1.1e-19 Score=192.72 Aligned_cols=113 Identities=20% Similarity=0.200 Sum_probs=58.8
Q ss_pred cccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccc---cCCCCCCEE
Q 003888 592 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQL---VELKTLAVF 668 (788)
Q Consensus 592 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L 668 (788)
+|+.|+|++|++++..+..|..+++|+.|+|++|+|+++.+..|.++++|++|+|++|+++...+..| ..+++|+.|
T Consensus 89 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L 168 (361)
T 2xot_A 89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLL 168 (361)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEE
T ss_pred CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEE
Confidence 55555555555555545555555555555555555555555555555555555555555553333333 345555555
Q ss_pred EccCCcCcccCCCcccccCC--CCccccCCCCCCCCCC
Q 003888 669 SVAYNNLSGEIPEWTAQFAT--FNESSYEGNTFLCGLP 704 (788)
Q Consensus 669 ~l~~N~l~~~~p~~~~~~~~--~~~~~~~gn~~~c~~~ 704 (788)
++++|++++..+..+..+.. +..+++.+|||.|+|+
T Consensus 169 ~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 169 DLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp ECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred ECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 55555555433333333332 2445556666666553
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=3.9e-19 Score=172.72 Aligned_cols=162 Identities=26% Similarity=0.292 Sum_probs=138.4
Q ss_pred CCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccC
Q 003888 466 CSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSN 545 (788)
Q Consensus 466 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~ 545 (788)
.+++++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|++.+..+..+..
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-------- 98 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK-------- 98 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC--------
Confidence 357899999999998777777888999999999999998777777888999999999999988666555544
Q ss_pred CCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCC
Q 003888 546 NSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHN 625 (788)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N 625 (788)
+++|+.|++++|++++..+..|..+++|++|++++|
T Consensus 99 --------------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (208)
T 2o6s_A 99 --------------------------------------------LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN 134 (208)
T ss_dssp --------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred --------------------------------------------ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC
Confidence 458999999999999877777899999999999999
Q ss_pred cCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCCccccc
Q 003888 626 NLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQF 686 (788)
Q Consensus 626 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~ 686 (788)
+++++.+..|..+++|++|++++|++.+ .+++|+.|+++.|+++|.+|.+++.+
T Consensus 135 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 135 QLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred ccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccc
Confidence 9998888889999999999999998874 35678999999999999999876543
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=1.5e-18 Score=169.63 Aligned_cols=156 Identities=20% Similarity=0.224 Sum_probs=101.5
Q ss_pred cEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCC-ccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEcc
Q 003888 445 EQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIP-NWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLS 523 (788)
Q Consensus 445 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 523 (788)
+.+++++|.+. .+|.. + .+.++.|++++|++++..+ ..|..+++|++|++++|++++..+..|.++++|++|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~-~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEH-I--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSC-C--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccC-C--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 46666666663 34443 2 2345677777777765533 346667777777777777776666667777777777777
Q ss_pred CCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcc
Q 003888 524 NNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKL 603 (788)
Q Consensus 524 ~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l 603 (788)
+|++.+..+..|.. +++|++|+|++|++
T Consensus 90 ~N~l~~~~~~~~~~----------------------------------------------------l~~L~~L~Ls~N~l 117 (220)
T 2v70_A 90 SNRLENVQHKMFKG----------------------------------------------------LESLKTLMLRSNRI 117 (220)
T ss_dssp SSCCCCCCGGGGTT----------------------------------------------------CSSCCEEECTTSCC
T ss_pred CCccCccCHhHhcC----------------------------------------------------CcCCCEEECCCCcC
Confidence 77776555544433 33677777777777
Q ss_pred cccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCC
Q 003888 604 IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP 656 (788)
Q Consensus 604 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 656 (788)
++..|..|..+++|+.|+|++|+++++.|..|..+++|++|++++|++.+..+
T Consensus 118 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 76666677777777777777777776666777777777777777777765443
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=1.2e-18 Score=193.21 Aligned_cols=166 Identities=27% Similarity=0.340 Sum_probs=111.3
Q ss_pred CccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEc
Q 003888 443 SIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDL 522 (788)
Q Consensus 443 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 522 (788)
+|+.|++++|.+. .+| ..+++|+.|++++|++++ +|. +.. +|++|++++|++++ +|. .+++|+.|++
T Consensus 81 ~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 81 QITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINA 147 (571)
T ss_dssp TCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred CCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeC
Confidence 3444444444443 333 234677788888887775 555 443 78888888888775 444 5677888888
Q ss_pred cCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCc
Q 003888 523 SNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNK 602 (788)
Q Consensus 523 s~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 602 (788)
++|++++ +|. . +++|+.|+|++|+
T Consensus 148 s~N~l~~-lp~---~----------------------------------------------------l~~L~~L~Ls~N~ 171 (571)
T 3cvr_A 148 DNNQLTM-LPE---L----------------------------------------------------PTSLEVLSVRNNQ 171 (571)
T ss_dssp CSSCCSC-CCC---C----------------------------------------------------CTTCCEEECCSSC
T ss_pred CCCccCc-CCC---c----------------------------------------------------CCCcCEEECCCCC
Confidence 8887764 222 1 3467888888888
Q ss_pred ccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCC-------CEEECcCCcccccCCccccCCCCCCEEEccCCcC
Q 003888 603 LIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHI-------ESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNL 675 (788)
Q Consensus 603 l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l 675 (788)
+++ +|. |. ++|+.|+|++|+|+.+ |. |.. +| +.|+|++|+|+ .+|..+..+++|+.|++++|++
T Consensus 172 L~~-lp~-l~--~~L~~L~Ls~N~L~~l-p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 172 LTF-LPE-LP--ESLEALDVSTNLLESL-PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp CSC-CCC-CC--TTCCEEECCSSCCSSC-CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSC
T ss_pred CCC-cch-hh--CCCCEEECcCCCCCch-hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcC
Confidence 875 555 55 7888888888888844 44 543 66 88888888887 5677777788888888888888
Q ss_pred cccCCCccccc
Q 003888 676 SGEIPEWTAQF 686 (788)
Q Consensus 676 ~~~~p~~~~~~ 686 (788)
++.+|..+..+
T Consensus 243 ~~~~p~~l~~l 253 (571)
T 3cvr_A 243 SSRIRESLSQQ 253 (571)
T ss_dssp CHHHHHHHHHH
T ss_pred CCcCHHHHHHh
Confidence 88777665554
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=2.3e-18 Score=168.38 Aligned_cols=154 Identities=21% Similarity=0.247 Sum_probs=107.1
Q ss_pred cEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccC
Q 003888 445 EQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSN 524 (788)
Q Consensus 445 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 524 (788)
+.++++++.+. .+|.. + .++++.|++++|++++..+..|..+++|++|++++|++++..|..|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~-l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTN-L--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSS-C--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCc-c--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 45666666663 44443 2 15677777777777766666677777777777777777766677777777777777777
Q ss_pred CcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCccc
Q 003888 525 NNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLI 604 (788)
Q Consensus 525 n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 604 (788)
|++++..+..|.. +++|+.|+|++|+++
T Consensus 90 N~l~~l~~~~f~~----------------------------------------------------l~~L~~L~L~~N~l~ 117 (220)
T 2v9t_B 90 NKITELPKSLFEG----------------------------------------------------LFSLQLLLLNANKIN 117 (220)
T ss_dssp SCCCCCCTTTTTT----------------------------------------------------CTTCCEEECCSSCCC
T ss_pred CcCCccCHhHccC----------------------------------------------------CCCCCEEECCCCCCC
Confidence 7776555544443 346777777777777
Q ss_pred ccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCccccc
Q 003888 605 GHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGK 654 (788)
Q Consensus 605 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 654 (788)
+..|..|..+++|+.|+|++|+++++.+..|..+++|++|++++|++.+.
T Consensus 118 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 77777777777777777777777777666777777777777777777653
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=4e-18 Score=167.89 Aligned_cols=157 Identities=26% Similarity=0.263 Sum_probs=132.0
Q ss_pred CCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCC
Q 003888 468 SLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNS 547 (788)
Q Consensus 468 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~ 547 (788)
+.+.++.+++.++ .+|..+. ++|++|++++|.+++..+..|..+++|+.|++++|++.+..+..|..
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~---------- 86 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS---------- 86 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT----------
T ss_pred eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc----------
Confidence 3567999999887 4555443 88999999999999888888999999999999999997666555554
Q ss_pred CCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcC
Q 003888 548 YSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNL 627 (788)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l 627 (788)
+++|+.|+|++|++++..+..|..+++|++|+|++|++
T Consensus 87 ------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l 124 (229)
T 3e6j_A 87 ------------------------------------------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124 (229)
T ss_dssp ------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ------------------------------------------CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcc
Confidence 44899999999999987777788999999999999999
Q ss_pred CccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCC
Q 003888 628 TGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIP 680 (788)
Q Consensus 628 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p 680 (788)
+ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|++.|..+
T Consensus 125 ~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 125 T-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp C-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred c-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 8 457778889999999999999987777778889999999999999987665
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.77 E-value=3.9e-18 Score=165.59 Aligned_cols=131 Identities=29% Similarity=0.276 Sum_probs=59.9
Q ss_pred CCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEE
Q 003888 298 NFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLY 377 (788)
Q Consensus 298 ~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 377 (788)
++|++|++++|.++ .++...+..+++|++|++++|+++++.+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 34555555555554 34333333445555555555555444444444444555555555444433333344444444444
Q ss_pred ccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCC
Q 003888 378 LNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDN 429 (788)
Q Consensus 378 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 429 (788)
+++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 4444444333333444444444444444444333333444444444444444
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=2.7e-18 Score=181.94 Aligned_cols=160 Identities=29% Similarity=0.320 Sum_probs=119.0
Q ss_pred CCCcEEEccCCcCCCCCCcccc-CCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccC
Q 003888 467 SSLVTLDLSYNRLNGSIPNWVD-GLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSN 545 (788)
Q Consensus 467 ~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~ 545 (788)
+.++.|+|++|++++..+..+. .+++|++|++++|++++..+..|.++++|+.|++++|++.+..+..|..
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------- 110 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSD-------- 110 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT--------
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCC--------
Confidence 3567788888877776666666 7788888888888887777777778888888888888777655555544
Q ss_pred CCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCC
Q 003888 546 NSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHN 625 (788)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N 625 (788)
+++|+.|+|++|++++..|..|..+++|+.|+|++|
T Consensus 111 --------------------------------------------l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N 146 (361)
T 2xot_A 111 --------------------------------------------LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146 (361)
T ss_dssp --------------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred --------------------------------------------CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC
Confidence 347888888888888777778888888888888888
Q ss_pred cCCccCCccc---cCCCCCCEEECcCCcccccCCccccCCCC--CCEEEccCCcCccc
Q 003888 626 NLTGLIPSTF---SNLKHIESLDLSYNKLNGKIPHQLVELKT--LAVFSVAYNNLSGE 678 (788)
Q Consensus 626 ~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~l~~N~l~~~ 678 (788)
+|+++.+..| ..+++|+.|+|++|+++...+..+..++. ++.|++++|++.|.
T Consensus 147 ~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 147 QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred cCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 8887666666 56788888888888888655566777776 37788888888764
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=1.8e-17 Score=163.26 Aligned_cols=155 Identities=28% Similarity=0.326 Sum_probs=98.6
Q ss_pred ccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEcc
Q 003888 444 IEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLS 523 (788)
Q Consensus 444 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 523 (788)
.+.++.+++.+ ..+|.. + .++|+.|++++|.+++..|..|..+++|++|++++|+++...+..|..+++|+.|+++
T Consensus 21 ~~~v~c~~~~l-~~ip~~-~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRH-ASVPAG-I--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCC-SSCCSC-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCc-CccCCC-C--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 44566666655 344443 1 2566677777777766666666666777777777777665555556666777777777
Q ss_pred CCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcc
Q 003888 524 NNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKL 603 (788)
Q Consensus 524 ~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l 603 (788)
+|++++..+..|.. +++|+.|+|++|++
T Consensus 97 ~N~l~~l~~~~~~~----------------------------------------------------l~~L~~L~Ls~N~l 124 (229)
T 3e6j_A 97 TNQLTVLPSAVFDR----------------------------------------------------LVHLKELFMCCNKL 124 (229)
T ss_dssp SSCCCCCCTTTTTT----------------------------------------------------CTTCCEEECCSSCC
T ss_pred CCcCCccChhHhCc----------------------------------------------------chhhCeEeccCCcc
Confidence 77666555444443 33666777777776
Q ss_pred cccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccC
Q 003888 604 IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI 655 (788)
Q Consensus 604 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 655 (788)
+ .+|..+..+++|+.|+|++|+++++.+..|..+++|+.|++++|++.+..
T Consensus 125 ~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 125 T-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp C-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred c-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 6 55666666677777777777776666666666677777777777666543
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=8.8e-18 Score=171.96 Aligned_cols=151 Identities=26% Similarity=0.380 Sum_probs=106.5
Q ss_pred ccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCccccc
Q 003888 463 FFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE 542 (788)
Q Consensus 463 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 542 (788)
+..+++|++|++++|++++..+ +..+++|++|++++|.+++. ..+..+++|+.|++++|++.+. ..+.
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~------ 131 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLV------ 131 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGG------
T ss_pred HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhc------
Confidence 5556677777777777765433 66777777777777777642 2367777777777777776542 1111
Q ss_pred ccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeC
Q 003888 543 SSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNL 622 (788)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 622 (788)
.+++|+.|++++|++++. ..+..+++|+.|++
T Consensus 132 ----------------------------------------------~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 163 (291)
T 1h6t_A 132 ----------------------------------------------HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSL 163 (291)
T ss_dssp ----------------------------------------------GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred ----------------------------------------------CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEc
Confidence 145777788888877754 46778888888888
Q ss_pred CCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcc
Q 003888 623 SHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSG 677 (788)
Q Consensus 623 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 677 (788)
++|++++..+ +..+++|++|++++|++++ +| .+..+++|+.|++++|+++.
T Consensus 164 ~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 164 EDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred cCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 8888887654 7788888888888888874 34 37788888888888888875
No 109
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=1.9e-17 Score=158.02 Aligned_cols=135 Identities=24% Similarity=0.373 Sum_probs=111.8
Q ss_pred cccEEECCCCcccccCcc-cccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEc
Q 003888 592 LLSGLDLSCNKLIGHIPP-QIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSV 670 (788)
Q Consensus 592 ~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 670 (788)
.++.|++++|.+++..+. .|+.+++|++|+|++|+|+++.|..|.++++|++|+|++|++++..|..|..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 688888999888876664 4888888999999999988888888888889999999999988888888888888999999
Q ss_pred cCCcCcccCCCcccccCCCCccccCCCCCCCCCCCC----------------CCCCCCCCCcccCCCCCCCC
Q 003888 671 AYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP----------------ICRSPATMSEASIGNERDDN 726 (788)
Q Consensus 671 ~~N~l~~~~p~~~~~~~~~~~~~~~gn~~~c~~~l~----------------~c~~~~~~~~~~~~~~~~~~ 726 (788)
++|++++..|..+..+.++..+++.+|++.|+|++. .|..|....+..+.....+.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~~l~~~~l~~l~~~~ 181 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSE 181 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTTTTSBGGGSCTTT
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCChHHcCCChhhCcHhh
Confidence 999988888888888888888888999998888642 68888888887665555443
No 110
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=158.21 Aligned_cols=135 Identities=22% Similarity=0.373 Sum_probs=120.3
Q ss_pred ccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEc
Q 003888 591 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSV 670 (788)
Q Consensus 591 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 670 (788)
++++.|++++|.++ .+|..|..+++|+.|+|++|+|+++.+..|.++++|++|+|++|++++..|..|..+++|+.|++
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 47999999999998 67789999999999999999999998899999999999999999999888889999999999999
Q ss_pred cCCcCcccCCCcccccCCCCccccCCCCCCCCCCCC----------------CCCCCCCCCcccCCCCCCCC
Q 003888 671 AYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP----------------ICRSPATMSEASIGNERDDN 726 (788)
Q Consensus 671 ~~N~l~~~~p~~~~~~~~~~~~~~~gn~~~c~~~l~----------------~c~~~~~~~~~~~~~~~~~~ 726 (788)
++|+++...+..+..+..+..+++.+|||.|+|++. .|..|....++.+.....+.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~~~ 181 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPSKK 181 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSSCCCSCCBEEESGGGTTCBTTTSCGGG
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhccCCCCCcCcCCchHHCCCCcccCChHH
Confidence 999999877777888999999999999999999642 58888888887666655443
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=4.6e-17 Score=182.65 Aligned_cols=62 Identities=29% Similarity=0.346 Sum_probs=33.1
Q ss_pred ccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCC
Q 003888 463 FFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLH 528 (788)
Q Consensus 463 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~ 528 (788)
+..+++|+.|+|++|.+.+ ++ .+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|++.
T Consensus 83 l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 144 (605)
T 1m9s_A 83 LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT 144 (605)
T ss_dssp GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccC
Confidence 4455556666666665553 22 355555566666655555532 23555555555555555554
No 112
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=7e-18 Score=176.42 Aligned_cols=292 Identities=16% Similarity=0.142 Sum_probs=175.6
Q ss_pred CCCCccEEEcccCCcccccchhHHHhhc-CCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhhc
Q 003888 17 HFKSLDHLDMVFARTALNTSFLQIIRES-MPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLA 95 (788)
Q Consensus 17 ~~~~L~~L~L~~~~~~~~~~~~~~l~~~-l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~ 95 (788)
.+.+++.|.+ ++. +.......+. . +++|++|||++|++... .... +.++.++.+.+..+.+ .+.+|.
T Consensus 23 ~~~~l~~L~l--~g~-i~~~~~~~l~-~~l~~L~~LdLs~n~i~~~--~~~~---~~~~~~~~~~~~~~~I---~~~aF~ 90 (329)
T 3sb4_A 23 EANSITHLTL--TGK-LNAEDFRHLR-DEFPSLKVLDISNAEIKMY--SGKA---GTYPNGKFYIYMANFV---PAYAFS 90 (329)
T ss_dssp HHHHCSEEEE--EEE-ECHHHHHHHH-HSCTTCCEEEEEEEEECCE--EESS---SSSGGGCCEEECTTEE---CTTTTE
T ss_pred hhCceeEEEE--ecc-ccHHHHHHHH-HhhccCeEEecCcceeEEe--cCcc---cccccccccccccccc---CHHHhc
Confidence 3678999999 654 3333344566 5 89999999999998410 1111 1223355566666633 345677
Q ss_pred C--------CCCCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEEccCcccccccccc
Q 003888 96 N--------MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITES 167 (788)
Q Consensus 96 ~--------l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 167 (788)
+ |++|+.|++++ .++ .|+..+|.+|++|+++++++|.+. .++...|.++.++..+....+........
T Consensus 91 ~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~- 166 (329)
T 3sb4_A 91 NVVNGVTKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNR- 166 (329)
T ss_dssp EEETTEEEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTT-
T ss_pred ccccccccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhcccc-
Confidence 7 89999999988 777 788878888999999999888776 45556777777777776554321100000
Q ss_pred ccCCCCcccccEEEccCCCCCCCCcCccccCCCCCC-EEEcCCCcCCCCCchhHhhc---CCCCCEEEcCCCcccccCcc
Q 003888 168 HSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLE-DVRLSHVNMDGEFPNWLLEN---NTKLRQLYLVNDSLTGPFRL 243 (788)
Q Consensus 168 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~---l~~L~~L~L~~~~l~~~~~~ 243 (788)
--...+..+..|+ .+.+... +.++..++.. ..+++.+.+.++-.......
T Consensus 167 -----------------------i~~~~f~~~~~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~ 220 (329)
T 3sb4_A 167 -----------------------WEHFAFIEGEPLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKL 220 (329)
T ss_dssp -----------------------TTTSCEEESCCCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHH
T ss_pred -----------------------ccccccccccccceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHH
Confidence 0001122233333 2333221 1122222221 23444444443311111110
Q ss_pred CcCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCC-EEEcccCcCCCccchHHHhcC
Q 003888 244 PIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQ-ILDLSNNQLTGEIPEHLAVSC 322 (788)
Q Consensus 244 ~l~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~-~L~l~~n~i~~~i~~~~~~~l 322 (788)
....+++|+.+++++|+++ .++...|..+++|+++++.+| +..+.+.+|.++++|+ .+++.+ .++ .|+...|.+|
T Consensus 221 l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c 296 (329)
T 3sb4_A 221 IRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGC 296 (329)
T ss_dssp HHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTC
T ss_pred HHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCC
Confidence 0112566777777776666 666666666777777777766 6656666777777777 777777 565 6777777777
Q ss_pred CCCCEEEccCccCCCcCcccCcCCCCCCEEec
Q 003888 323 VNLEFLALSNNNLKGHMFSRNFNLTNLRSLQL 354 (788)
Q Consensus 323 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 354 (788)
++|+.++++.|.++.+....|.++++|+.++.
T Consensus 297 ~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 297 DNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 77777777777777777777777777777653
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.70 E-value=3.6e-16 Score=173.24 Aligned_cols=178 Identities=27% Similarity=0.352 Sum_probs=104.4
Q ss_pred CCCEEEcCCCcccccCccCcCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEc
Q 003888 226 KLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDL 305 (788)
Q Consensus 226 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 305 (788)
+++.|++++|.+++ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.+ +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 56666666666655 33322 255666666666666 555 224666667776666665 444 443 6667777
Q ss_pred ccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCC
Q 003888 306 SNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSG 385 (788)
Q Consensus 306 ~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~ 385 (788)
++|.++ .+|. .+++|++|++++|.++++.. .+++|++|++++|.+++ +|. +. ++|+.|++++|.++
T Consensus 128 s~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~- 193 (571)
T 3cvr_A 128 DNNQLT-MLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE- 193 (571)
T ss_dssp CSSCCS-CCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-
T ss_pred CCCcCC-CCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-
Confidence 777666 3555 35666777777666665332 35666667777666664 444 44 66667777766666
Q ss_pred CCcccccCCCCC-------CEEeCCCCcccCCccccccCCCCccEEEccCCcCCC
Q 003888 386 KIPRWLGNLTGL-------KHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISG 433 (788)
Q Consensus 386 ~~~~~~~~l~~L-------~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 433 (788)
.+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|.+++
T Consensus 194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 194 SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCH
T ss_pred chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCC
Confidence 3443 333 44 66666666666 345555556666666666666654
No 114
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=1.7e-17 Score=173.49 Aligned_cols=75 Identities=16% Similarity=0.087 Sum_probs=35.6
Q ss_pred ccEEECCCCcccccCcccccCcccCC-eEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEE
Q 003888 593 LSGLDLSCNKLIGHIPPQIGNLTRIQ-TLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFS 669 (788)
Q Consensus 593 L~~L~Ls~n~l~~~~~~~l~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 669 (788)
|+.+++.+| +..+.+.+|.++++|+ .+++.+ +++.+.+.+|.++++|+++++++|.++...+.+|.++++|+.++
T Consensus 252 L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 252 LLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 333333333 3333444445555555 555544 44444445555555555555555555444444555555555443
No 115
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=1.8e-16 Score=162.24 Aligned_cols=170 Identities=22% Similarity=0.346 Sum_probs=104.3
Q ss_pred CCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCE
Q 003888 248 HRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEF 327 (788)
Q Consensus 248 ~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~ 327 (788)
+++|+.|++++|.+. .++. ...+++|++|++++|.+++..+ +.++++|++|++++|.++ .++. +..+++|++
T Consensus 45 l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~ 116 (291)
T 1h6t_A 45 LNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS--LKDLKKLKS 116 (291)
T ss_dssp HHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG--GTTCTTCCE
T ss_pred cCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh--hccCCCCCE
Confidence 444555555555544 2222 2225566666666666654433 666666666666666665 3443 235666666
Q ss_pred EEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcc
Q 003888 328 LALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHL 407 (788)
Q Consensus 328 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~ 407 (788)
|++++|++++. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++..+ +..+++|++|++++|.+
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence 66666666653 3455666777777777776643 456667777777777777765433 66677777777777777
Q ss_pred cCCccccccCCCCccEEEccCCcCCC
Q 003888 408 EGPIPVGFCQLYSLQILDISDNNISG 433 (788)
Q Consensus 408 ~~~~~~~~~~l~~L~~L~l~~n~~~~ 433 (788)
++. + .+..+++|+.|++++|++..
T Consensus 191 ~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 191 SDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCC-h-hhccCCCCCEEECcCCcccC
Confidence 643 2 36677777777777776653
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=6e-17 Score=162.94 Aligned_cols=152 Identities=22% Similarity=0.261 Sum_probs=127.2
Q ss_pred ccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCccccc
Q 003888 463 FFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE 542 (788)
Q Consensus 463 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 542 (788)
+..+++|+.|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|+.|++++|++.+..+...
T Consensus 37 ~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~------- 105 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS------- 105 (263)
T ss_dssp HHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC-------
T ss_pred hhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcccc-------
Confidence 6778899999999999884 44 67889999999999999986554 8899999999999998875322110
Q ss_pred ccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeC
Q 003888 543 SSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNL 622 (788)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 622 (788)
++|+.|++++|++++. + .+..+++|+.|++
T Consensus 106 ------------------------------------------------~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~L 135 (263)
T 1xeu_A 106 ------------------------------------------------ACLSRLFLDNNELRDT-D-SLIHLKNLEILSI 135 (263)
T ss_dssp ------------------------------------------------SSCCEEECCSSCCSBS-G-GGTTCTTCCEEEC
T ss_pred ------------------------------------------------CcccEEEccCCccCCC-h-hhcCcccccEEEC
Confidence 3799999999999864 3 6889999999999
Q ss_pred CCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccC
Q 003888 623 SHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEI 679 (788)
Q Consensus 623 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~ 679 (788)
++|+++++ ..+..+++|++|++++|++++. ..+..+++|+.|++++|++++..
T Consensus 136 s~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 136 RNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp TTSCCCBC--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred CCCcCCCC--hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 99999976 3688899999999999999866 67889999999999999998763
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=6.7e-17 Score=155.19 Aligned_cols=155 Identities=16% Similarity=0.277 Sum_probs=124.3
Q ss_pred ccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCccccc
Q 003888 463 FFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE 542 (788)
Q Consensus 463 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 542 (788)
...+++|+.|++++|.++ .+| .+..+++|++|++++|.++. +..+..+++|++|++++|++.+..+..+..
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~----- 110 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSG----- 110 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTT-----
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcC-----
Confidence 456678999999999888 445 57888999999999997763 346888999999999999887655555544
Q ss_pred ccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeC
Q 003888 543 SSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNL 622 (788)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 622 (788)
+++|+.|++++|++++..|..++.+++|++|++
T Consensus 111 -----------------------------------------------l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L 143 (197)
T 4ezg_A 111 -----------------------------------------------LTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143 (197)
T ss_dssp -----------------------------------------------CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred -----------------------------------------------CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence 458999999999998878888999999999999
Q ss_pred CCCc-CCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcc
Q 003888 623 SHNN-LTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSG 677 (788)
Q Consensus 623 s~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 677 (788)
++|+ ++.+ | .+..+++|++|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus 144 ~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 144 SYNGAITDI-M-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CSCTBCCCC-G-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred cCCCCcccc-H-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 9998 7655 3 68889999999999999985 44 77889999999999998764
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=1.6e-16 Score=151.66 Aligned_cols=131 Identities=28% Similarity=0.392 Sum_probs=72.2
Q ss_pred cEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCc-ccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCC
Q 003888 470 VTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPV-QLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSY 548 (788)
Q Consensus 470 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~ 548 (788)
+.+++++|.++ .+|..+. .++++|++++|++++..+. .|..+++|++|++++|++++..|..|..
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----------- 76 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG----------- 76 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-----------
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC-----------
Confidence 56666666665 3444332 2666666666666654443 3555666666666666655544444433
Q ss_pred CCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCC
Q 003888 549 SLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLT 628 (788)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 628 (788)
+++|+.|+|++|++++..+..|..+++|++|+|++|+++
T Consensus 77 -----------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 115 (192)
T 1w8a_A 77 -----------------------------------------ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS 115 (192)
T ss_dssp -----------------------------------------CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCC
T ss_pred -----------------------------------------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC
Confidence 224555555555555555555555555555555555555
Q ss_pred ccCCccccCCCCCCEEECcCCcccccC
Q 003888 629 GLIPSTFSNLKHIESLDLSYNKLNGKI 655 (788)
Q Consensus 629 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 655 (788)
+..|..|..+++|++|++++|++.+..
T Consensus 116 ~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 116 CVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp EECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred eeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 555555555555555555555555443
No 119
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.68 E-value=1.5e-15 Score=162.84 Aligned_cols=331 Identities=15% Similarity=0.159 Sum_probs=174.9
Q ss_pred CChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCc
Q 003888 265 IPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNF 344 (788)
Q Consensus 265 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~ 344 (788)
|....|..+.+|+++.+.. .++.+...+|.++++|+.+++.++ ++ .++...|.++.+|+.+.+..+ +..+...+|.
T Consensus 62 Ig~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~ 137 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFK 137 (394)
T ss_dssp ECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred hHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeee
Confidence 3333444444555555542 244344445555666666665443 33 555555555666665555432 3444444454
Q ss_pred CCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEE
Q 003888 345 NLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQIL 424 (788)
Q Consensus 345 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 424 (788)
++..++...... .......+|.+|++|+.+.+.++. .......|.++++|+.+.+..+ ++.+...+|.++..|+.+
T Consensus 138 ~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i 213 (394)
T 4fs7_A 138 GCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENM 213 (394)
T ss_dssp TCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBC
T ss_pred cccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhcccccccee
Confidence 443332222221 122334566777777777776543 2244556667777777777665 443555667777777766
Q ss_pred EccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCc
Q 003888 425 DISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLE 504 (788)
Q Consensus 425 ~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 504 (788)
.+..+... .....+....++.+.+.... ..+...+|..+..++.+.+..+... .....|..+..++.+....+.+
T Consensus 214 ~~~~~~~~-i~~~~~~~~~l~~i~ip~~~--~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i- 288 (394)
T 4fs7_A 214 EFPNSLYY-LGDFALSKTGVKNIIIPDSF--TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV- 288 (394)
T ss_dssp CCCTTCCE-ECTTTTTTCCCCEEEECTTC--CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE-
T ss_pred ecCCCceE-eehhhcccCCCceEEECCCc--eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee-
Confidence 66554322 22223334455555554322 2344455667777777777665433 4455566666777666655432
Q ss_pred cccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceee
Q 003888 505 GEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYI 584 (788)
Q Consensus 505 ~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (788)
....|..+.+|+.+.+.++ +..+...+|..+
T Consensus 289 --~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c---------------------------------------------- 319 (394)
T 4fs7_A 289 --PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESC---------------------------------------------- 319 (394)
T ss_dssp --CTTTTTTCTTCCEEEECTT-CCEECTTTTTTC----------------------------------------------
T ss_pred --ccccccccccccccccccc-cceechhhhcCC----------------------------------------------
Confidence 2335666666776666543 333333344332
Q ss_pred ecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCC
Q 003888 585 YQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKT 664 (788)
Q Consensus 585 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 664 (788)
++|+.+++..+ ++.+...+|.++++|+.+++..+ ++.+...+|.++++|+++++..+ +. .+..+|.++++
T Consensus 320 ------~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~ 389 (394)
T 4fs7_A 320 ------TSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTK 389 (394)
T ss_dssp ------TTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCE
T ss_pred ------CCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCC
Confidence 25566666433 44455556666666666666554 55555566666666666666544 22 22345555555
Q ss_pred CCE
Q 003888 665 LAV 667 (788)
Q Consensus 665 L~~ 667 (788)
|+.
T Consensus 390 L~~ 392 (394)
T 4fs7_A 390 FKW 392 (394)
T ss_dssp EEE
T ss_pred CcE
Confidence 544
No 120
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.68 E-value=2.1e-15 Score=160.66 Aligned_cols=266 Identities=14% Similarity=0.145 Sum_probs=170.9
Q ss_pred CCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEe
Q 003888 322 CVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHII 401 (788)
Q Consensus 322 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 401 (788)
+..++.+.+.+ .++.+...+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .+.......|.+|++|+.++
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 45566666653 3455555555553 5666665544 443444455553 455555543 33333334444455555555
Q ss_pred CCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCC
Q 003888 402 MPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNG 481 (788)
Q Consensus 402 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 481 (788)
+.+ |.++......|...+|+.+.+..+ ...++..+|.+|++|+.+++..+ ++.
T Consensus 187 l~~------------------------n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~ 239 (401)
T 4fdw_A 187 LSK------------------------TKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VST 239 (401)
T ss_dssp CTT------------------------SCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCE
T ss_pred cCC------------------------CcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccC
Confidence 544 444444444444444555555433 24566677889999999999875 555
Q ss_pred CCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCC-----CCCCCCCcCcccccccCCCCCCCCcccc
Q 003888 482 SIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLH-----GPIPPCFDNTTLHESSNNSYSLKPFETS 556 (788)
Q Consensus 482 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (788)
....+|.+ .+|+.+.+ .+.++.+...+|.++++|+.+++.+|.+. .+.+.+|..
T Consensus 240 I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~------------------- 298 (401)
T 4fdw_A 240 IGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEG------------------- 298 (401)
T ss_dssp ECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTT-------------------
T ss_pred cccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhC-------------------
Confidence 66677777 78999999 45566677888999999999999887664 223333433
Q ss_pred cccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCcccc
Q 003888 557 LVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFS 636 (788)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 636 (788)
+++|+.+++. +.++.+...+|.++++|+.++|..| ++.+.+.+|.
T Consensus 299 ---------------------------------c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~ 343 (401)
T 4fdw_A 299 ---------------------------------CPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFN 343 (401)
T ss_dssp ---------------------------------CTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSS
T ss_pred ---------------------------------CccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCC
Confidence 3478888887 4466677778888888888888554 7777778888
Q ss_pred CCCCCCEEECcCCcccccCCccccCCC-CCCEEEccCCcCc
Q 003888 637 NLKHIESLDLSYNKLNGKIPHQLVELK-TLAVFSVAYNNLS 676 (788)
Q Consensus 637 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~l~~N~l~ 676 (788)
++ +|+.+++++|.+....+..|..++ .++.+.+..+.+.
T Consensus 344 ~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 344 NT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp SS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred CC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 88 888888888887766666777774 6777877776544
No 121
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.67 E-value=4.4e-16 Score=174.74 Aligned_cols=144 Identities=24% Similarity=0.292 Sum_probs=74.0
Q ss_pred CcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEecc
Q 003888 276 LISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLE 355 (788)
Q Consensus 276 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 355 (788)
+..+.+..+.+....+ +..+++|+.|++++|.+. .++. +..+++|+.|+|++|.+++..+ +..+++|+.|+|+
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 4444455555543322 345666666666666665 4442 2246666666666666665443 4555666666666
Q ss_pred CCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCC
Q 003888 356 GNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNIS 432 (788)
Q Consensus 356 ~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 432 (788)
+|.+.+ ++ .+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.
T Consensus 96 ~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 96 ENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp SSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred CCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence 665553 22 355555555555555555432 2344445555555555554432 33444444444444444443
No 122
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.66 E-value=3.7e-15 Score=158.77 Aligned_cols=247 Identities=14% Similarity=0.199 Sum_probs=126.1
Q ss_pred CCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCC
Q 003888 324 NLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMP 403 (788)
Q Consensus 324 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 403 (788)
+|+.+.+..+ ++.+...+|.++ +|+.+.+.+ .++.+.+.+|.+|++|+.+++.+|.++......|. +.+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 3444444333 333334444432 345555443 33334444555555555555555555433333443 3555555555
Q ss_pred CCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCC
Q 003888 404 ENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSI 483 (788)
Q Consensus 404 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 483 (788)
++ +..+...+|.++++|+.+++..+ ++.+....|...+|+.+.+.++ + ..++..+|.+|++|+.+++.++.+..
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~~-i-~~I~~~aF~~c~~L~~l~l~~~~~~~-- 285 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPNG-V-TNIASRAFYYCPELAEVTTYGSTFND-- 285 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEETT-C-CEECTTTTTTCTTCCEEEEESSCCCC--
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCCC-c-cEEChhHhhCCCCCCEEEeCCccccC--
Confidence 33 44444555556666666665543 2222222222222333333111 1 23344445555555555555544320
Q ss_pred CccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCccccccccccc
Q 003888 484 PNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMM 563 (788)
Q Consensus 484 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (788)
+.+..+.+.+|.++++|+.+++.+ .+..+...+|..+
T Consensus 286 -----------------~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c------------------------- 322 (401)
T 4fdw_A 286 -----------------DPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGN------------------------- 322 (401)
T ss_dssp -----------------CTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTC-------------------------
T ss_pred -----------------CcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCC-------------------------
Confidence 001123344555555555555552 2443333444332
Q ss_pred chhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCC-CCC
Q 003888 564 IPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLK-HIE 642 (788)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~ 642 (788)
++|+.++|..+ ++.+.+.+|.++ +|+.+++++|.+..+.+..|.+++ .++
T Consensus 323 ---------------------------~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~ 373 (401)
T 4fdw_A 323 ---------------------------RKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDIT 373 (401)
T ss_dssp ---------------------------CSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCC
T ss_pred ---------------------------CCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCcc
Confidence 25555566433 455666788888 899999999888888788888884 788
Q ss_pred EEECcCCccc
Q 003888 643 SLDLSYNKLN 652 (788)
Q Consensus 643 ~L~Ls~N~l~ 652 (788)
.|++..+.+.
T Consensus 374 ~l~vp~~~~~ 383 (401)
T 4fdw_A 374 VIRVPAESVE 383 (401)
T ss_dssp EEEECGGGHH
T ss_pred EEEeCHHHHH
Confidence 8888887654
No 123
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=6.7e-16 Score=148.18 Aligned_cols=103 Identities=20% Similarity=0.234 Sum_probs=51.0
Q ss_pred CCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCC
Q 003888 324 NLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMP 403 (788)
Q Consensus 324 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 403 (788)
+|++|++++|.++.+. .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 45 ~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 45 SLTYITLANINVTDLT--GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp TCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CccEEeccCCCccChH--HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 4444444444443221 2334444455555544433 11234555555555555555554444455555555555555
Q ss_pred CCcccCCccccccCCCCccEEEccCCc
Q 003888 404 ENHLEGPIPVGFCQLYSLQILDISDNN 430 (788)
Q Consensus 404 ~n~~~~~~~~~~~~l~~L~~L~l~~n~ 430 (788)
+|.+.+..+..+..+++|++|++++|.
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCC
Confidence 555554445555555555555555554
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=1.8e-18 Score=192.89 Aligned_cols=77 Identities=23% Similarity=0.187 Sum_probs=50.5
Q ss_pred cccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccC-CccccCCCCCCEEECcCCcccccCCc---cccCCCCCCE
Q 003888 592 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLI-PSTFSNLKHIESLDLSYNKLNGKIPH---QLVELKTLAV 667 (788)
Q Consensus 592 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~ 667 (788)
+|+.|+|++|.+++ +| .++.+++|+.|+|++|+|++.. |..++.+++|+.|++++|++++.+|. .+..+++|+.
T Consensus 487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~ 564 (567)
T 1dce_A 487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564 (567)
T ss_dssp TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence 56666666666654 45 6677777777777777777665 77777777777777777777755442 1233677777
Q ss_pred EEc
Q 003888 668 FSV 670 (788)
Q Consensus 668 L~l 670 (788)
|++
T Consensus 565 L~l 567 (567)
T 1dce_A 565 ILT 567 (567)
T ss_dssp EEC
T ss_pred cCC
Confidence 653
No 125
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.62 E-value=6.8e-16 Score=155.22 Aligned_cols=169 Identities=20% Similarity=0.273 Sum_probs=112.8
Q ss_pred CCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCC
Q 003888 324 NLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMP 403 (788)
Q Consensus 324 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 403 (788)
++..++++++.++++. .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 4555566666666543 34456666677776666663 33 45666666666666666664333 5666666666666
Q ss_pred CCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCC
Q 003888 404 ENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSI 483 (788)
Q Consensus 404 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 483 (788)
+|++.+..+ +.. ++|++|++++|.++ + ++ .+..+++|+.|++++|++++.
T Consensus 94 ~N~l~~l~~--~~~-~~L~~L~L~~N~l~-----------------------~-~~--~l~~l~~L~~L~Ls~N~i~~~- 143 (263)
T 1xeu_A 94 RNRLKNLNG--IPS-ACLSRLFLDNNELR-----------------------D-TD--SLIHLKNLEILSIRNNKLKSI- 143 (263)
T ss_dssp SSCCSCCTT--CCC-SSCCEEECCSSCCS-----------------------B-SG--GGTTCTTCCEEECTTSCCCBC-
T ss_pred CCccCCcCc--ccc-CcccEEEccCCccC-----------------------C-Ch--hhcCcccccEEECCCCcCCCC-
Confidence 666654321 122 55555555555554 2 22 277888999999999998864
Q ss_pred CccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCC
Q 003888 484 PNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPI 531 (788)
Q Consensus 484 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~ 531 (788)
+ .+..+++|++|++++|++++. ..+..+++|+.|++++|++....
T Consensus 144 ~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 144 V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 3 678889999999999999866 67888999999999999887653
No 126
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.60 E-value=2.4e-14 Score=153.49 Aligned_cols=317 Identities=12% Similarity=0.086 Sum_probs=210.1
Q ss_pred CCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCc
Q 003888 286 LDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQ 365 (788)
Q Consensus 286 ~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 365 (788)
++.+...+|.++.+|+.+.+..+ ++ .|+...|.+|++|+.+++..+ ++.+....|.++.+|+.+.+..+ +......
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence 44556678999999999999754 66 888888888999999999755 77777788888999998877654 4435566
Q ss_pred cccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCC-CCCc
Q 003888 366 SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFH-PLSI 444 (788)
Q Consensus 366 ~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~L 444 (788)
+|.++..++...... ........|.++++|+.+.+.++. ..+...+|.++.+|+.+++..+ ++.+....|. +..|
T Consensus 135 aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L 210 (394)
T 4fs7_A 135 AFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILL 210 (394)
T ss_dssp TTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTC
T ss_pred eeecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhcccccc
Confidence 777775443333222 222445678888999999987654 3356677888888888888765 3323333332 3444
Q ss_pred cEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccC
Q 003888 445 EQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSN 524 (788)
Q Consensus 445 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 524 (788)
+.+.+..+.. .+... +..+.+|+.+.+.... +.....++.++..++.+.+..+... .....|..+..++.+....
T Consensus 211 ~~i~~~~~~~--~i~~~-~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~ 285 (394)
T 4fs7_A 211 ENMEFPNSLY--YLGDF-ALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGS 285 (394)
T ss_dssp CBCCCCTTCC--EECTT-TTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECS
T ss_pred ceeecCCCce--Eeehh-hcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCc
Confidence 4444443322 11112 2233455555554332 2233345555666666666554333 4445555666666555544
Q ss_pred CcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCccc
Q 003888 525 NNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLI 604 (788)
Q Consensus 525 n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 604 (788)
+.+. ...|.. ..+|+.+.+..+ +.
T Consensus 286 ~~i~---~~~F~~----------------------------------------------------~~~L~~i~l~~~-i~ 309 (394)
T 4fs7_A 286 VIVP---EKTFYG----------------------------------------------------CSSLTEVKLLDS-VK 309 (394)
T ss_dssp SEEC---TTTTTT----------------------------------------------------CTTCCEEEECTT-CC
T ss_pred eeec---cccccc----------------------------------------------------cccccccccccc-cc
Confidence 3221 111211 347888888765 66
Q ss_pred ccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCC
Q 003888 605 GHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYN 673 (788)
Q Consensus 605 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N 673 (788)
.+...+|.++++|+.++|..+ ++.+...+|.++++|+.+++..+ ++.....+|.++++|+.+++..+
T Consensus 310 ~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 310 FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 677788999999999999754 88788899999999999999877 76677789999999999998754
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=3.6e-15 Score=139.10 Aligned_cols=86 Identities=23% Similarity=0.257 Sum_probs=58.7
Q ss_pred ccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCC-ccccCCCCCCEEECcCCcccccCC---ccccCCCCCC
Q 003888 591 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIP-STFSNLKHIESLDLSYNKLNGKIP---HQLVELKTLA 666 (788)
Q Consensus 591 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~ 666 (788)
++|+.|++++|.+++.+|..+..+++|+.|++++|++++..+ ..+..+++|++|++++|++++..+ ..+..+++|+
T Consensus 71 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 150 (168)
T 2ell_A 71 PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLT 150 (168)
T ss_dssp SSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCC
T ss_pred CCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCc
Confidence 356666666666665566666667777777777777776532 567777777777777777775444 3667777777
Q ss_pred EEEccCCcCc
Q 003888 667 VFSVAYNNLS 676 (788)
Q Consensus 667 ~L~l~~N~l~ 676 (788)
+|++++|++.
T Consensus 151 ~L~l~~n~~~ 160 (168)
T 2ell_A 151 YLDGYDREDQ 160 (168)
T ss_dssp EETTEETTSC
T ss_pred EecCCCCChh
Confidence 7777777766
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.59 E-value=1e-14 Score=138.89 Aligned_cols=87 Identities=29% Similarity=0.342 Sum_probs=53.4
Q ss_pred cccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEcc
Q 003888 592 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVA 671 (788)
Q Consensus 592 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 671 (788)
+|+.|+|++|.+++..+..|.++++|++|+|++|+|+++.+..|.++++|++|+|++|+++...+..|..+++|+.|+++
T Consensus 55 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence 44445555555554555556666666666666666666666666666666666666666665444556666666666666
Q ss_pred CCcCccc
Q 003888 672 YNNLSGE 678 (788)
Q Consensus 672 ~N~l~~~ 678 (788)
+|++.|.
T Consensus 135 ~N~~~C~ 141 (193)
T 2wfh_A 135 ANPLYCD 141 (193)
T ss_dssp SSCEECS
T ss_pred CCCeecC
Confidence 6666653
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=2.9e-15 Score=139.77 Aligned_cols=137 Identities=26% Similarity=0.280 Sum_probs=111.7
Q ss_pred CCCCcEEEccCCcCC-CCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCccccccc
Q 003888 466 CSSLVTLDLSYNRLN-GSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESS 544 (788)
Q Consensus 466 ~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~ 544 (788)
.++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|+.|++++|++.+.+|..+..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------- 93 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK------- 93 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH-------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh-------
Confidence 377899999999887 56777788889999999999998865 67888999999999999887654433322
Q ss_pred CCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccC-cccccCcccCCeEeCC
Q 003888 545 NNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHI-PPQIGNLTRIQTLNLS 623 (788)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls 623 (788)
+++|+.|++++|.+++.. +..+..+++|+.|+++
T Consensus 94 ---------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~ 128 (168)
T 2ell_A 94 ---------------------------------------------LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLF 128 (168)
T ss_dssp ---------------------------------------------CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECC
T ss_pred ---------------------------------------------CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEee
Confidence 458999999999998643 2788999999999999
Q ss_pred CCcCCccCC---ccccCCCCCCEEECcCCcccccCCc
Q 003888 624 HNNLTGLIP---STFSNLKHIESLDLSYNKLNGKIPH 657 (788)
Q Consensus 624 ~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~p~ 657 (788)
+|.+++..+ ..+..+++|++|++++|.+. .+|.
T Consensus 129 ~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 129 NCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp SSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred CCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 999997765 58899999999999999987 4454
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=1.6e-14 Score=135.97 Aligned_cols=89 Identities=25% Similarity=0.290 Sum_probs=61.5
Q ss_pred cccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEcc
Q 003888 592 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVA 671 (788)
Q Consensus 592 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 671 (788)
+|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|+++
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence 55555555555555555556677777777777777777666667777777777777777775555556677777777777
Q ss_pred CCcCcccCC
Q 003888 672 YNNLSGEIP 680 (788)
Q Consensus 672 ~N~l~~~~p 680 (788)
+|++.+.+|
T Consensus 133 ~N~~~~~~~ 141 (177)
T 2o6r_A 133 TNPWDCSCP 141 (177)
T ss_dssp SSCBCCCHH
T ss_pred CCCeeccCc
Confidence 777776655
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=1.3e-14 Score=136.48 Aligned_cols=114 Identities=24% Similarity=0.287 Sum_probs=105.5
Q ss_pred ccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEc
Q 003888 591 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSV 670 (788)
Q Consensus 591 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 670 (788)
++|+.|++++|++++..+..|+.+++|++|++++|+++++.+..|..+++|++|++++|++++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 47999999999999887778899999999999999999988888999999999999999999877778899999999999
Q ss_pred cCCcCcccCCCcccccCCCCccccCCCCCCCCCC
Q 003888 671 AYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP 704 (788)
Q Consensus 671 ~~N~l~~~~p~~~~~~~~~~~~~~~gn~~~c~~~ 704 (788)
++|++++..+..+..+.++..+++.+|++.|+|+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999998777767888999999999999999886
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=5.1e-15 Score=135.01 Aligned_cols=81 Identities=23% Similarity=0.272 Sum_probs=57.3
Q ss_pred ccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCcc-CCccccCCCCCCEEECcCCcccccCC---ccccCCCCCC
Q 003888 591 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGL-IPSTFSNLKHIESLDLSYNKLNGKIP---HQLVELKTLA 666 (788)
Q Consensus 591 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~ 666 (788)
++|+.|++++|.+++.+|..+..+++|++|++++|++++. .+..+..+++|++|++++|++++..+ ..+..+++|+
T Consensus 64 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 143 (149)
T 2je0_A 64 NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT 143 (149)
T ss_dssp TTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCC
T ss_pred CCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcc
Confidence 3566666666666655666666777778888887777764 23667777888888888888776555 4677778888
Q ss_pred EEEcc
Q 003888 667 VFSVA 671 (788)
Q Consensus 667 ~L~l~ 671 (788)
.|+++
T Consensus 144 ~L~l~ 148 (149)
T 2je0_A 144 YLDGY 148 (149)
T ss_dssp EETTB
T ss_pred cccCC
Confidence 77775
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.56 E-value=8.7e-17 Score=179.39 Aligned_cols=183 Identities=16% Similarity=0.197 Sum_probs=128.3
Q ss_pred CCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCc-------------CCCCCcccccCCCCCCEEE-cccCcCC
Q 003888 246 HSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNA-------------LDSSIPSSFGNMNFLQILD-LSNNQLT 311 (788)
Q Consensus 246 ~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~-------------~~~~~~~~~~~l~~L~~L~-l~~n~i~ 311 (788)
..++.|+.|++++|.++ .+|.++.. +++|++|++++|. ..+..|..++++++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 34556666666666665 56666655 5566666665443 4455666777777788777 5655443
Q ss_pred CccchHHHh-------cCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCC
Q 003888 312 GEIPEHLAV-------SCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLS 384 (788)
Q Consensus 312 ~~i~~~~~~-------~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~ 384 (788)
.++..... ....|+.|++++|.+++++ . +..+++|+.|++++|.++ .+|..+..+++|+.|++++|.++
T Consensus 424 -~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp-~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 424 -DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC-H-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCC-C-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred -hhhhhhhhcccccccCccCceEEEecCCCCCCCc-C-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence 33321110 1235888888888888753 3 778888888888888888 67778888888888888888887
Q ss_pred CCCcccccCCCCCCEEeCCCCcccCCc-cccccCCCCccEEEccCCcCCCCCC
Q 003888 385 GKIPRWLGNLTGLKHIIMPENHLEGPI-PVGFCQLYSLQILDISDNNISGSLP 436 (788)
Q Consensus 385 ~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~ 436 (788)
+ +| .+..+++|+.|++++|.+++.. |..+..+++|+.|++++|.+++..+
T Consensus 500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 5 45 6788888888888888888765 7788888888888888888775543
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=8.2e-15 Score=133.61 Aligned_cols=131 Identities=21% Similarity=0.255 Sum_probs=111.6
Q ss_pred CCCCCccEEEcccCCcccc-cchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhh
Q 003888 16 PHFKSLDHLDMVFARTALN-TSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCL 94 (788)
Q Consensus 16 ~~~~~L~~L~L~~~~~~~~-~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l 94 (788)
...++|+.|++ ++|.++ +.++..+. .+++|++|++++|.+. .+ ..++++++|++|++++|.+++.+|..+
T Consensus 14 ~~~~~l~~L~l--~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~----~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~ 84 (149)
T 2je0_A 14 RTPSDVKELVL--DNSRSNEGKLEGLTD-EFEELEFLSTINVGLT----SI--ANLPKLNKLKKLELSDNRVSGGLEVLA 84 (149)
T ss_dssp CCGGGCSEEEC--TTCBCBTTBCCSCCT-TCTTCCEEECTTSCCC----CC--TTCCCCTTCCEEECCSSCCCSCTHHHH
T ss_pred CCCccCeEEEc--cCCcCChhHHHHHHh-hcCCCcEEECcCCCCC----Cc--hhhhcCCCCCEEECCCCcccchHHHHh
Confidence 45688999999 999998 67788778 9999999999999995 33 368999999999999999998788888
Q ss_pred cCCCCCCEEECCCCcCcCcCCh-hhhcCCCCCCEEECcCccccccCC--ccccccCCCCcEEEcc
Q 003888 95 ANMTSLRILDVSSNQLTGSISS-SPLVHLTSIEELMLSNNHFQIPIS--LEPLFNHSRLKIFDAA 156 (788)
Q Consensus 95 ~~l~~L~~L~Ls~n~~~~~i~~-~~l~~l~~L~~L~Ls~n~l~~~~~--~~~l~~l~~L~~L~l~ 156 (788)
.++++|++|++++|.++ .++. ..++.+++|++|++++|.+++..+ ...+..+++|++|+++
T Consensus 85 ~~l~~L~~L~ls~N~i~-~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 85 EKCPNLTHLNLSGNKIK-DLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHCTTCCEEECTTSCCC-SHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hhCCCCCEEECCCCcCC-ChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 89999999999999998 5541 378999999999999999985433 1468889999999875
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.53 E-value=2.5e-15 Score=173.16 Aligned_cols=143 Identities=29% Similarity=0.331 Sum_probs=94.9
Q ss_pred CCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCcccc
Q 003888 289 SIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLS 368 (788)
Q Consensus 289 ~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 368 (788)
..+..+..++.|+.|+|++|.+. .+|..++ .+++|++|+|++|.++. .+..+.++++|++|+|++|.++ .+|..+.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~ 290 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLT-SLPAELG 290 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCSC-CCGGGGGGTTCCEEECTTSCCS-SCCSSGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCcc-cChhhhCCCCCCEEeCcCCcCC-ccChhhc
Confidence 44566777778888888888777 7777666 57777777777777773 4566677777777777777777 5677777
Q ss_pred CCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCC-CccEEEccCCcCCCCCC
Q 003888 369 KCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLY-SLQILDISDNNISGSLP 436 (788)
Q Consensus 369 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~ 436 (788)
.+++|++|+|++|.++ .+|..|..+++|+.|+|++|.+.+..|..+..+. .+..+++++|.+++..|
T Consensus 291 ~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 7777777777777776 5566677777777777777777766666554331 11235666666665444
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.53 E-value=1.4e-15 Score=175.15 Aligned_cols=164 Identities=23% Similarity=0.180 Sum_probs=74.4
Q ss_pred CCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEc
Q 003888 347 TNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDI 426 (788)
Q Consensus 347 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 426 (788)
+.++.|++.+|.+.. .+.. .++.++|+.+.+.+ +++..|.+. ..+..+..++.|+.|++
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~-----~l~~l~Ls~~~i~~--------------~~~~~n~~~-~~~~~~~~l~~L~~L~L 231 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQA-----LLQHKKLSQYSIDE--------------DDDIENRMV-MPKDSKYDDQLWHALDL 231 (727)
T ss_dssp ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred CccceEEeeCCCCCc-chhh-----HhhcCccCcccccC--------------cccccccee-cChhhhccCCCCcEEEC
Confidence 556777777777663 2322 23444444444331 122233333 33445555666666666
Q ss_pred cCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccc
Q 003888 427 SDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGE 506 (788)
Q Consensus 427 ~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 506 (788)
++|.+....+..+.+.+|+.|++++|.+. .+|.. |..+++|+.|+|++|.++ .+|..+..+++|++|+|++|.++ .
T Consensus 232 s~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~ 307 (727)
T 4b8c_D 232 SNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAE-IKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-T 307 (727)
T ss_dssp TTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGG-GGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-C
T ss_pred CCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChh-hhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-c
Confidence 66665543334444444555555555443 44443 667777778888877777 55777777777888888777776 5
Q ss_pred cCcccCCCCCCCEEEccCCcCCCCCCCCC
Q 003888 507 VPVQLCELNQLQLLDLSNNNLHGPIPPCF 535 (788)
Q Consensus 507 ~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~ 535 (788)
+|..|..+++|+.|+|++|++++.+|..+
T Consensus 308 lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 308 LPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp CCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred cChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 56667777777777777777766555443
No 137
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.53 E-value=6.6e-13 Score=142.29 Aligned_cols=321 Identities=12% Similarity=0.143 Sum_probs=147.6
Q ss_pred CcEEEcccCcCCCCCcccccCCCCCCEEEcccCc---CCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEE
Q 003888 276 LISFNISMNALDSSIPSSFGNMNFLQILDLSNNQ---LTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSL 352 (788)
Q Consensus 276 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~---i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 352 (788)
|+.+.+.. .++.+...+|.++.+|+.+.+..+. ++ .|+...|.++.+|+.+.+..+ ++.+....|.++.+|+.+
T Consensus 66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred CEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 44444432 2333444445555555555554432 33 444455545555555544432 444444455555556665
Q ss_pred eccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCC
Q 003888 353 QLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNIS 432 (788)
Q Consensus 353 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 432 (788)
.+..+. ..+...+|..+.+|+.+.+..+ +.......|.. ..|+.+.+..+... ....+|..+..++..........
T Consensus 143 ~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~ 218 (394)
T 4gt6_A 143 TIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYP 218 (394)
T ss_dssp ECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSC
T ss_pred ccccee-eeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccccceecccccccc
Confidence 554332 2244445555666666665543 22233334433 45666665543322 34455566666665555443322
Q ss_pred CCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccC
Q 003888 433 GSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLC 512 (788)
Q Consensus 433 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 512 (788)
......+....... .....+.....+..+.+... ++.....+|.++.+|+.+.+.++... +...+|.
T Consensus 219 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~ 285 (394)
T 4gt6_A 219 AIDNVLYEKSANGD-----------YALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVVS-IGTGAFM 285 (394)
T ss_dssp BSSSCEEEECTTSC-----------EEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTT
T ss_pred cccceeeccccccc-----------ccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccce-ecCcccc
Confidence 11111110000000 00000111122333333221 22233344555555666655544332 4445555
Q ss_pred CCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeeccccccc
Q 003888 513 ELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSL 592 (788)
Q Consensus 513 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 592 (788)
++++|+.+.+.. .+..+...+|..+ .+
T Consensus 286 ~c~~L~~i~l~~-~i~~I~~~aF~~c----------------------------------------------------~~ 312 (394)
T 4gt6_A 286 NCPALQDIEFSS-RITELPESVFAGC----------------------------------------------------IS 312 (394)
T ss_dssp TCTTCCEEECCT-TCCEECTTTTTTC----------------------------------------------------TT
T ss_pred cccccccccCCC-cccccCceeecCC----------------------------------------------------CC
Confidence 666666666542 2333333333332 25
Q ss_pred ccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccC
Q 003888 593 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAY 672 (788)
Q Consensus 593 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~ 672 (788)
|+.+++..+ ++.+...+|.++.+|+++.+..+ ++.+...+|.++++|+.+++.++.... ..+....+|+.+.+..
T Consensus 313 L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 313 LKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAP 387 (394)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-------
T ss_pred cCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCC
Confidence 555555443 44455566777777777777543 665666777777777777777765431 3455666677666655
Q ss_pred Cc
Q 003888 673 NN 674 (788)
Q Consensus 673 N~ 674 (788)
|.
T Consensus 388 ~~ 389 (394)
T 4gt6_A 388 GS 389 (394)
T ss_dssp --
T ss_pred CC
Confidence 43
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.50 E-value=7.3e-14 Score=130.04 Aligned_cols=110 Identities=25% Similarity=0.272 Sum_probs=82.3
Q ss_pred cccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEcc
Q 003888 592 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVA 671 (788)
Q Consensus 592 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 671 (788)
..+.+++++|.++ .+|..+. ++|+.|+|++|+|+++.|..|.++++|++|+|++|+|++..+..|..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3567778887777 3555543 677788888888887777777778888888888888876666667777888888888
Q ss_pred CCcCcccCCCcccccCCCCccccCCCCCCCCCC
Q 003888 672 YNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP 704 (788)
Q Consensus 672 ~N~l~~~~p~~~~~~~~~~~~~~~gn~~~c~~~ 704 (788)
+|++++..+..+..+.++..+++.+|++.|+|+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 888877666667777777778888888888775
No 139
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.49 E-value=3.2e-12 Score=136.90 Aligned_cols=327 Identities=9% Similarity=0.083 Sum_probs=164.7
Q ss_pred CCCEEEcCCCcccccCccCcCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEc
Q 003888 226 KLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDL 305 (788)
Q Consensus 226 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 305 (788)
.|+.+.+..+ ++.....+|.++.+|+.+.+..+.- ..++.+...+|.++.+|+.+.+
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p----------------------~~l~~Ig~~aF~~c~~L~~i~~ 121 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKP----------------------SCVKKIGRQAFMFCSELTDIPI 121 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCC----------------------CCCCEECTTTTTTCTTCCBCGG
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCC----------------------CeeeEechhhchhcccceeecc
Confidence 3565555432 4444445555555555555554320 0122233334444555554444
Q ss_pred ccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCC
Q 003888 306 SNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSG 385 (788)
Q Consensus 306 ~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~ 385 (788)
..+ ++ .++...+..+.+|+.+.+.. .+..+....|..+.+|+.+.+.++ ++.+...+|.. .+|+.+.+..+-. .
T Consensus 122 ~~~-~~-~I~~~aF~~c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~ 195 (394)
T 4gt6_A 122 LDS-VT-EIDSEAFHHCEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-R 195 (394)
T ss_dssp GTT-CS-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-E
T ss_pred CCc-cc-eehhhhhhhhcccccccccc-eeeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc-c
Confidence 333 22 44444444455555555542 233334444555555555555443 22233333432 3455555544322 1
Q ss_pred CCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccC
Q 003888 386 KIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFH 465 (788)
Q Consensus 386 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 465 (788)
.....|..+..++................+........-..... ....+..+.+... + ..+...+|.+
T Consensus 196 i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ip~~-v-~~i~~~aF~~ 263 (394)
T 4gt6_A 196 IGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYP----------SQREDPAFKIPNG-V-ARIETHAFDS 263 (394)
T ss_dssp ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECC----------TTCCCSEEECCTT-E-EEECTTTTTT
T ss_pred cccchhhhccccceecccccccccccceeecccccccccccccc----------cccccceEEcCCc-c-eEcccceeee
Confidence 33344555555555554443322111111111111010000000 0011122222111 1 2344556888
Q ss_pred CCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccC
Q 003888 466 CSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSN 545 (788)
Q Consensus 466 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~ 545 (788)
|..|+.+.+.++... ....+|.++++|+.+.+. +.++.+...+|.++.+|+.+++.++ ++.+...+|..+
T Consensus 264 c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C------- 333 (394)
T 4gt6_A 264 CAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGC------- 333 (394)
T ss_dssp CSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC-------
T ss_pred cccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCC-------
Confidence 888888888765443 556677888888888885 4555566778888888888888754 544445555553
Q ss_pred CCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCC
Q 003888 546 NSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHN 625 (788)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N 625 (788)
.+|+.+.+..+ ++.+...+|.++++|+.+++.++
T Consensus 334 ---------------------------------------------~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 334 ---------------------------------------------EQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp ---------------------------------------------TTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred ---------------------------------------------CCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 37888888654 66677788999999999999988
Q ss_pred cCCccCCccccCCCCCCEEECcCCccc
Q 003888 626 NLTGLIPSTFSNLKHIESLDLSYNKLN 652 (788)
Q Consensus 626 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 652 (788)
.... ..+....+|+.+.+..|.+.
T Consensus 368 ~~~~---~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 368 RSQW---NAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp HHHH---HTCBCCCCC-----------
T ss_pred eeeh---hhhhccCCCCEEEeCCCCEE
Confidence 6542 46777888999988777653
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=9e-14 Score=130.55 Aligned_cols=84 Identities=19% Similarity=0.185 Sum_probs=57.0
Q ss_pred cccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCC-ccccCCCCCCEEECcCCcccccCCcc----ccCCCCCC
Q 003888 592 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIP-STFSNLKHIESLDLSYNKLNGKIPHQ----LVELKTLA 666 (788)
Q Consensus 592 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~ 666 (788)
+|+.|++++|.+++..+..+..+++|++|++++|+++...+ ..+..+++|++|++++|+++ .+|.. +..+++|+
T Consensus 65 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~ 143 (176)
T 1a9n_A 65 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVR 143 (176)
T ss_dssp SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCS
T ss_pred CCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccc
Confidence 55556666666654444455777777777777777765432 26777778888888888876 44543 77788888
Q ss_pred EEEccCCcCc
Q 003888 667 VFSVAYNNLS 676 (788)
Q Consensus 667 ~L~l~~N~l~ 676 (788)
.||+++|...
T Consensus 144 ~Ld~~~n~~~ 153 (176)
T 1a9n_A 144 VLDFQKVKLK 153 (176)
T ss_dssp EETTEECCHH
T ss_pred eeCCCcCCHH
Confidence 8888887765
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=2.3e-13 Score=127.10 Aligned_cols=108 Identities=21% Similarity=0.253 Sum_probs=72.3
Q ss_pred cEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCC
Q 003888 594 SGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYN 673 (788)
Q Consensus 594 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N 673 (788)
+.+++++|.++ .+|..+. ++|+.|+|++|+|+++.|..|.++++|++|+|++|+|++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45677777765 4555443 66777777777777666667777777777777777776555555666777777777777
Q ss_pred cCcccCCCcccccCCCCccccCCCCCCCCCC
Q 003888 674 NLSGEIPEWTAQFATFNESSYEGNTFLCGLP 704 (788)
Q Consensus 674 ~l~~~~p~~~~~~~~~~~~~~~gn~~~c~~~ 704 (788)
++++..+..+..+.++..+++.+|++.|+|+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 7776555556666677777777777777664
No 142
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=1e-13 Score=130.21 Aligned_cols=135 Identities=20% Similarity=0.183 Sum_probs=107.6
Q ss_pred ccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCccccc
Q 003888 463 FFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE 542 (788)
Q Consensus 463 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 542 (788)
+..+++|+.|++++|+++. ++......++|++|++++|.+++. ..+..+++|++|++++|++.+..+..+..
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~----- 86 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQA----- 86 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHH-----
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhc-----
Confidence 6678899999999999985 454333345999999999999865 57889999999999999987544333232
Q ss_pred ccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcc--cccCcccCCeE
Q 003888 543 SSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPP--QIGNLTRIQTL 620 (788)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~l~~l~~L~~L 620 (788)
+++|+.|++++|.+. .+|. .+..+++|+.|
T Consensus 87 -----------------------------------------------l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L 118 (176)
T 1a9n_A 87 -----------------------------------------------LPDLTELILTNNSLV-ELGDLDPLASLKSLTYL 118 (176)
T ss_dssp -----------------------------------------------CTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEE
T ss_pred -----------------------------------------------CCCCCEEECCCCcCC-cchhhHhhhcCCCCCEE
Confidence 458999999999997 4554 78899999999
Q ss_pred eCCCCcCCccCCc---cccCCCCCCEEECcCCcccc
Q 003888 621 NLSHNNLTGLIPS---TFSNLKHIESLDLSYNKLNG 653 (788)
Q Consensus 621 ~Ls~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~ 653 (788)
++++|.++...+. .+..+++|+.||+++|.+..
T Consensus 119 ~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 119 CILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp ECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 9999999865332 48899999999999998764
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=4.8e-13 Score=124.50 Aligned_cols=90 Identities=24% Similarity=0.263 Sum_probs=84.7
Q ss_pred ccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEc
Q 003888 591 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSV 670 (788)
Q Consensus 591 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 670 (788)
+.|+.|+|++|.+++..|..|..+++|++|+|++|+|+++.+..|.++++|++|+|++|++++..+..|..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 37999999999999998999999999999999999999998889999999999999999999877778999999999999
Q ss_pred cCCcCcccCC
Q 003888 671 AYNNLSGEIP 680 (788)
Q Consensus 671 ~~N~l~~~~p 680 (788)
++|++++..+
T Consensus 110 ~~N~~~c~c~ 119 (170)
T 3g39_A 110 LNNPWDCACS 119 (170)
T ss_dssp CSSCBCTTBG
T ss_pred CCCCCCCCch
Confidence 9999998765
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=1.1e-15 Score=146.68 Aligned_cols=155 Identities=24% Similarity=0.296 Sum_probs=117.6
Q ss_pred cCCCCCcEEEccCCcCCCCCCc------cccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcC
Q 003888 464 FHCSSLVTLDLSYNRLNGSIPN------WVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDN 537 (788)
Q Consensus 464 ~~~~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~ 537 (788)
...+.++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|+.|++++|++.. +|..+..
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~ 91 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAV 91 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhhc
Confidence 3445666666666666665554 78888899999999999886 45 78888999999999998863 2322111
Q ss_pred cccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccC
Q 003888 538 TTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRI 617 (788)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 617 (788)
+++|+.|++++|++++ +| .+..+++|
T Consensus 92 ----------------------------------------------------~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 92 ----------------------------------------------------ADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp ----------------------------------------------------HHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred ----------------------------------------------------CCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 3578999999999886 34 68889999
Q ss_pred CeEeCCCCcCCccCC-ccccCCCCCCEEECcCCcccccCCcc----------ccCCCCCCEEEccCCcCcc
Q 003888 618 QTLNLSHNNLTGLIP-STFSNLKHIESLDLSYNKLNGKIPHQ----------LVELKTLAVFSVAYNNLSG 677 (788)
Q Consensus 618 ~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~l~~N~l~~ 677 (788)
+.|++++|++++..+ ..+..+++|++|++++|++.+.+|.. +..+++|+.|| +|+++.
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 999999999987543 56888999999999999998776643 77888999887 676663
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=1.5e-12 Score=121.43 Aligned_cols=90 Identities=24% Similarity=0.272 Sum_probs=83.6
Q ss_pred ccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEc
Q 003888 591 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSV 670 (788)
Q Consensus 591 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 670 (788)
+.|+.|+|++|++++..|..|.++++|+.|+|++|+|+++.+..|.++++|++|+|++|+|++..+..|..+++|+.|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 37999999999999998999999999999999999999988888999999999999999999776667999999999999
Q ss_pred cCCcCcccCC
Q 003888 671 AYNNLSGEIP 680 (788)
Q Consensus 671 ~~N~l~~~~p 680 (788)
++|++.+..+
T Consensus 113 ~~N~~~c~~~ 122 (174)
T 2r9u_A 113 YNNPWDCECR 122 (174)
T ss_dssp CSSCBCTTBG
T ss_pred CCCCcccccc
Confidence 9999997654
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.31 E-value=8.9e-15 Score=140.41 Aligned_cols=153 Identities=22% Similarity=0.246 Sum_probs=121.8
Q ss_pred ccCCCCCCEEEccCCcCccccCc------ccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccc
Q 003888 487 VDGLSQLSHLILGHNNLEGEVPV------QLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMD 560 (788)
Q Consensus 487 ~~~l~~L~~L~L~~n~l~~~~~~------~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (788)
+.....++.++++++.+.+..|. .+..+++|++|++++|++.+ +| .+..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~----------------------- 68 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSG----------------------- 68 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHH-----------------------
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cccc-----------------------
Confidence 34456777777777777766665 88999999999999999986 33 3332
Q ss_pred cccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCC
Q 003888 561 SMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKH 640 (788)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 640 (788)
+++|+.|++++|.++ .+|..+..+++|++|++++|+++++ | .+..+++
T Consensus 69 -----------------------------l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~ 116 (198)
T 1ds9_A 69 -----------------------------MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-S-GIEKLVN 116 (198)
T ss_dssp -----------------------------HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHH
T ss_pred -----------------------------CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCCC
Confidence 458999999999998 6788888889999999999999985 3 6888999
Q ss_pred CCEEECcCCcccccCC-ccccCCCCCCEEEccCCcCcccCCCc----------ccccCCCCccccCCCC
Q 003888 641 IESLDLSYNKLNGKIP-HQLVELKTLAVFSVAYNNLSGEIPEW----------TAQFATFNESSYEGNT 698 (788)
Q Consensus 641 L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~l~~N~l~~~~p~~----------~~~~~~~~~~~~~gn~ 698 (788)
|++|++++|++++..+ ..+..+++|++|++++|++++.+|.. +..++.+..++ ||+
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~ 183 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMP 183 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGG
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Ccc
Confidence 9999999999985433 47889999999999999999887652 44555555543 554
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.29 E-value=5.6e-12 Score=132.77 Aligned_cols=106 Identities=15% Similarity=0.208 Sum_probs=58.4
Q ss_pred EECCCC-cccccCcccccCcccCCeEeCCC-CcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCC
Q 003888 596 LDLSCN-KLIGHIPPQIGNLTRIQTLNLSH-NNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYN 673 (788)
Q Consensus 596 L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N 673 (788)
++++++ +++ .+|. +..+++|++|+|++ |+|+++.+..|.++++|++|+|++|+|++..|..|..+++|+.|+|++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455555 554 3444 55555556666654 5555555555555556666666666555555555555555666666666
Q ss_pred cCcccCCCcccccCCCCccccCCCCCCCCCC
Q 003888 674 NLSGEIPEWTAQFATFNESSYEGNTFLCGLP 704 (788)
Q Consensus 674 ~l~~~~p~~~~~~~~~~~~~~~gn~~~c~~~ 704 (788)
+|++..+..+..+. +..+++.+|++.|+|+
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence 55544444333332 5555555565555554
No 148
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.28 E-value=4.8e-10 Score=119.41 Aligned_cols=144 Identities=11% Similarity=0.095 Sum_probs=83.4
Q ss_pred ccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCccccc
Q 003888 463 FFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE 542 (788)
Q Consensus 463 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 542 (788)
+..+.+|+.+.+..+ +......++.++.+|+.+.+..+ ++.+...+|.++.+|+.+.+..+ +......+|..
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~----- 284 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSG----- 284 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTT-----
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccc-----
Confidence 455556666665543 22234445556666666666554 44455556666666666666443 33222333333
Q ss_pred ccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeC
Q 003888 543 SSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNL 622 (788)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 622 (788)
+++|+.+++.++.++.+...+|.++.+|+.++|
T Consensus 285 -----------------------------------------------c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 285 -----------------------------------------------CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp -----------------------------------------------CTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred -----------------------------------------------ccccccccccccccceehhhhhcCCCCCCEEEc
Confidence 235666666666666566667777777777777
Q ss_pred CCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCC
Q 003888 623 SHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELK 663 (788)
Q Consensus 623 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 663 (788)
..+ ++.+...+|.++++|+++.+..+ ++..-..+|.+.+
T Consensus 318 p~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 318 PTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred Ccc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 643 66666677777777777777554 4444445555543
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.27 E-value=7.9e-12 Score=131.60 Aligned_cols=114 Identities=17% Similarity=0.220 Sum_probs=94.7
Q ss_pred cccccEEECCC-CcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEE
Q 003888 590 LSLLSGLDLSC-NKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVF 668 (788)
Q Consensus 590 l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 668 (788)
+++|+.|+|++ |.+.+..+..|.++++|+.|+|++|+|+++.|..|.++++|++|+|++|+|++..+..+..++ |+.|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 34899999996 999998889999999999999999999999999999999999999999999977666776666 9999
Q ss_pred EccCCcCcccCC-CcccccCCCCccccCCCCCCCCCC
Q 003888 669 SVAYNNLSGEIP-EWTAQFATFNESSYEGNTFLCGLP 704 (788)
Q Consensus 669 ~l~~N~l~~~~p-~~~~~~~~~~~~~~~gn~~~c~~~ 704 (788)
++++|++.+... .|+..+.......+..+.+.|..+
T Consensus 109 ~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~ 145 (347)
T 2ifg_A 109 VLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQ 145 (347)
T ss_dssp ECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSS
T ss_pred EeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCC
Confidence 999999997654 334444444444556677778654
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.25 E-value=4.9e-10 Score=119.36 Aligned_cols=154 Identities=10% Similarity=0.071 Sum_probs=93.9
Q ss_pred ccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCccccc
Q 003888 463 FFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE 542 (788)
Q Consensus 463 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 542 (788)
+..+..+..+.+...... .....+..+.+|+.+.+..+ +......+|.++..|+.+.+..+ ++.+...+|..+
T Consensus 190 ~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~---- 262 (379)
T 4h09_A 190 YPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNC---- 262 (379)
T ss_dssp CCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTC----
T ss_pred ccccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCcccccee----
Confidence 334445555555443222 33445566677777777554 33355566777777777777654 433333344332
Q ss_pred ccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeC
Q 003888 543 SSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNL 622 (788)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 622 (788)
..|+.+++..+ +..+....|.++++|+.+.+
T Consensus 263 ------------------------------------------------~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l 293 (379)
T 4h09_A 263 ------------------------------------------------TALKTLNFYAK-VKTVPYLLCSGCSNLTKVVM 293 (379)
T ss_dssp ------------------------------------------------TTCCEEEECCC-CSEECTTTTTTCTTCCEEEE
T ss_pred ------------------------------------------------ehhcccccccc-ceeccccccccccccccccc
Confidence 25666666543 44455566777777777777
Q ss_pred CCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCC
Q 003888 623 SHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYN 673 (788)
Q Consensus 623 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N 673 (788)
.++.++.+...+|.++++|+.+++..+ ++..-..+|.++++|+.+.+..+
T Consensus 294 ~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 294 DNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 777777777777777777777777654 55455567777777777766543
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.15 E-value=1.3e-12 Score=137.65 Aligned_cols=161 Identities=19% Similarity=0.138 Sum_probs=79.3
Q ss_pred CCCCCEEEcCCCcccccCccC----cC-CCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccc----
Q 003888 224 NTKLRQLYLVNDSLTGPFRLP----IH-SHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSF---- 294 (788)
Q Consensus 224 l~~L~~L~L~~~~l~~~~~~~----l~-~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~---- 294 (788)
.+.|++|++++|.++...... +. ..++|++|++++|.+++.....+...+++|++|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 345666666666655422221 11 225677777777766544344444445567777777776654333332
Q ss_pred -cCCCCCCEEEcccCcCCCccchHHH---hcCCCCCEEEccCccCCCcC----cccCcCCCCCCEEeccCCcCCCc----
Q 003888 295 -GNMNFLQILDLSNNQLTGEIPEHLA---VSCVNLEFLALSNNNLKGHM----FSRNFNLTNLRSLQLEGNHLEGE---- 362 (788)
Q Consensus 295 -~~l~~L~~L~l~~n~i~~~i~~~~~---~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~l~~n~l~~~---- 362 (788)
...++|++|++++|.+++.....+. ..+++|++|++++|.++... ...+...++|++|++++|.++..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2345666777766666521111111 23555666666666554322 12233344555555555555432
Q ss_pred CCccccCCCCCCEEEccCCcCC
Q 003888 363 IPQSLSKCSSLEGLYLNNNSLS 384 (788)
Q Consensus 363 ~~~~l~~l~~L~~L~L~~n~i~ 384 (788)
+...+..+++|++|++++|.++
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHhCCCCCEEeccCCCCC
Confidence 1122233444555555555444
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.13 E-value=2.5e-12 Score=135.51 Aligned_cols=159 Identities=18% Similarity=0.145 Sum_probs=88.0
Q ss_pred CCCcEEEcccCcCCCCCccccc-----CCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccC-----
Q 003888 274 PSLISFNISMNALDSSIPSSFG-----NMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRN----- 343 (788)
Q Consensus 274 ~~L~~L~L~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~----- 343 (788)
+.|++|++++|.++......+. ..++|++|++++|.+++.....+...+++|++|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4556666666655533222221 124666666666666533333333334566666666666654333332
Q ss_pred cCCCCCCEEeccCCcCCCc----CCccccCCCCCCEEEccCCcCCCCC----cccccCCCCCCEEeCCCCcccCCc----
Q 003888 344 FNLTNLRSLQLEGNHLEGE----IPQSLSKCSSLEGLYLNNNSLSGKI----PRWLGNLTGLKHIIMPENHLEGPI---- 411 (788)
Q Consensus 344 ~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~l~~n~~~~~~---- 411 (788)
...++|++|++++|.++.. ++..+..+++|++|+|++|.+++.. +..+...++|++|++++|.++...
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 1345677777777766532 2333455667777777777765322 334555667777777777766432
Q ss_pred cccccCCCCccEEEccCCcCC
Q 003888 412 PVGFCQLYSLQILDISDNNIS 432 (788)
Q Consensus 412 ~~~~~~l~~L~~L~l~~n~~~ 432 (788)
...+...++|++|++++|.+.
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHhCCCCCEEeccCCCCC
Confidence 233444567777777777665
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.74 E-value=3.8e-09 Score=110.16 Aligned_cols=162 Identities=17% Similarity=0.149 Sum_probs=96.5
Q ss_pred ccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccC--CCCCCCEEEccCC--cCCCCCCCCCcCc
Q 003888 463 FFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLC--ELNQLQLLDLSNN--NLHGPIPPCFDNT 538 (788)
Q Consensus 463 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~Ls~n--~i~~~~~~~~~~~ 538 (788)
+..+|+|+.|++++|.-. ..+. +. +++|++|++..|.+.......+. .+|+|+.|+|+.+ ...+.. .+...
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~--~~~~l 242 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG--DMNVF 242 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS--CGGGT
T ss_pred HhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch--hHHHH
Confidence 456678888888777311 1222 33 67888888888877644333333 6788888888532 111100 00000
Q ss_pred ccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCccccc---Ccc
Q 003888 539 TLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIG---NLT 615 (788)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~---~l~ 615 (788)
........+++|+.|+|++|.+.+..+..+. .++
T Consensus 243 -------------------------------------------~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~ 279 (362)
T 2ra8_A 243 -------------------------------------------RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILP 279 (362)
T ss_dssp -------------------------------------------GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGG
T ss_pred -------------------------------------------HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCC
Confidence 0000111256888888888887654333332 578
Q ss_pred cCCeEeCCCCcCCcc----CCccccCCCCCCEEECcCCcccccCCccccC-CCCCCEEEccCCc
Q 003888 616 RIQTLNLSHNNLTGL----IPSTFSNLKHIESLDLSYNKLNGKIPHQLVE-LKTLAVFSVAYNN 674 (788)
Q Consensus 616 ~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~l~~N~ 674 (788)
+|++|+|+.|.+++. ++..+..+++|+.|++++|.|+...-..+.. + ...+++++++
T Consensus 280 ~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 280 QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp GCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 888888888888764 2334456788888888888877544333433 2 3557777765
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.65 E-value=1.4e-08 Score=105.82 Aligned_cols=42 Identities=14% Similarity=0.127 Sum_probs=21.8
Q ss_pred CCCCCCEEEcCCCcCCCCCchhHhh--cCCCCCEEEcCCCcccc
Q 003888 198 HQHDLEDVRLSHVNMDGEFPNWLLE--NNTKLRQLYLVNDSLTG 239 (788)
Q Consensus 198 ~~~~L~~L~l~~~~~~~~~~~~~~~--~l~~L~~L~L~~~~l~~ 239 (788)
.+++|+.|++.+|.+.+..+..++. .+++|++|+|+.|.+++
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 3566777777666655433333321 24455555555555443
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.63 E-value=6.4e-09 Score=97.78 Aligned_cols=123 Identities=18% Similarity=0.187 Sum_probs=79.5
Q ss_pred hHHHhhcCCCCcEEeCCCC-CCCCCCCCCCcccccCCCCCCEEEcCCCCCCcC----CChhhcCCCCCCEEECCCCcCcC
Q 003888 38 LQIIRESMPSLKYLSMSDS-TLGTNSSRILDQGLCSLMHLQELYIDNNDLRGS----LPWCLANMTSLRILDVSSNQLTG 112 (788)
Q Consensus 38 ~~~l~~~l~~L~~L~Ls~~-~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~~~~ 112 (788)
...+. ..++|++|+|++| .++..+.......+...++|++|+|++|.+.+. +..++...++|++|+|++|.|.+
T Consensus 29 ~~~l~-~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 29 KRIQN-NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHT-TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHh-cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 34455 6778888888887 774222222233556677888888888887653 34455666788888888888762
Q ss_pred c----CChhhhcCCCCCCEEEC--cCccccccC---CccccccCCCCcEEEccCccccc
Q 003888 113 S----ISSSPLVHLTSIEELML--SNNHFQIPI---SLEPLFNHSRLKIFDAANNEIKA 162 (788)
Q Consensus 113 ~----i~~~~l~~l~~L~~L~L--s~n~l~~~~---~~~~l~~l~~L~~L~l~~n~~~~ 162 (788)
. +.. .+...++|++|++ ++|.+.... -...+...++|++|++++|.+..
T Consensus 108 ~g~~~l~~-~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 108 SGILALVE-ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHHHH-GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHH-HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 2 233 5666778888888 777765321 11345566788888888887653
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.59 E-value=7.8e-09 Score=97.17 Aligned_cols=119 Identities=18% Similarity=0.147 Sum_probs=90.7
Q ss_pred CCCCCCCccEEEcccCCc-ccccc----hhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCc
Q 003888 14 GFPHFKSLDHLDMVFART-ALNTS----FLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRG 88 (788)
Q Consensus 14 ~l~~~~~L~~L~L~~~~~-~~~~~----~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 88 (788)
.+.+.++|++|+| ++| .+... +...+. ..++|++|+|++|.+++.+.....+.+...++|++|+|++|.+.+
T Consensus 31 ~l~~~~~L~~L~L--~~n~~i~~~g~~~l~~~L~-~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 31 IQNNDPDLEEVNL--NNIMNIPVPTLKACAEALK-TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHTTCTTCCEEEC--TTCTTCCHHHHHHHHHHHT-TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHhcCCCCCEEEe--cCCCCCCHHHHHHHHHHHH-hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3567889999999 998 88754 345566 678999999999998532222223456667899999999999986
Q ss_pred C----CChhhcCCCCCCEEEC--CCCcCcCc----CChhhhcCCCCCCEEECcCcccc
Q 003888 89 S----LPWCLANMTSLRILDV--SSNQLTGS----ISSSPLVHLTSIEELMLSNNHFQ 136 (788)
Q Consensus 89 ~----~~~~l~~l~~L~~L~L--s~n~~~~~----i~~~~l~~l~~L~~L~Ls~n~l~ 136 (788)
. +..++...++|++|+| ++|.+... +.. .+...++|++|++++|.+.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCCCCC
Confidence 4 4667788899999999 88988732 333 5667789999999999875
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.36 E-value=1.7e-07 Score=92.39 Aligned_cols=66 Identities=21% Similarity=0.282 Sum_probs=30.7
Q ss_pred cCCCCcEEeCCCCCCCCCCC--CCCcccccCCCCCCEEEcCCCCCCcCCChhhcCCC--CCCEEECCCCcCcCcCC
Q 003888 44 SMPSLKYLSMSDSTLGTNSS--RILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMT--SLRILDVSSNQLTGSIS 115 (788)
Q Consensus 44 ~l~~L~~L~Ls~~~l~~~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~--~L~~L~Ls~n~~~~~i~ 115 (788)
.+++|++|+|++|.+. + .++. .+..+++|++|+|++|++++. ..+..++ +|++|+|++|.+.+.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~---~l~~l~~-~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLY---RLDDMSS-IVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCC---CCGGGTT-HHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCC---CCccchh-HHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 4555555555555553 1 1111 334455555555555555533 2222222 55555555555544333
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.22 E-value=9.1e-07 Score=87.11 Aligned_cols=67 Identities=28% Similarity=0.391 Sum_probs=36.8
Q ss_pred cCcccCCeEeCCCCcCCcc--CCccccCCCCCCEEECcCCcccccCCccccCCC--CCCEEEccCCcCcccCC
Q 003888 612 GNLTRIQTLNLSHNNLTGL--IPSTFSNLKHIESLDLSYNKLNGKIPHQLVELK--TLAVFSVAYNNLSGEIP 680 (788)
Q Consensus 612 ~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~l~~N~l~~~~p 680 (788)
.++++|++|+|++|+|+++ +|..++.+++|+.|+|++|+|++. ..+..+. +|++|++++|++++.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 3455666666666666653 234444566666666666666543 2233333 66666666666665444
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.04 E-value=1.6e-06 Score=78.87 Aligned_cols=83 Identities=16% Similarity=0.178 Sum_probs=43.2
Q ss_pred CCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCC-CCcCCChhhcCC----CCCCEEECCCCc-CcCcCChhhhc
Q 003888 47 SLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNND-LRGSLPWCLANM----TSLRILDVSSNQ-LTGSISSSPLV 120 (788)
Q Consensus 47 ~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~l----~~L~~L~Ls~n~-~~~~i~~~~l~ 120 (788)
.|++||+++|.+++ ..-..+..+++|++|+|++|. +++..-..++.+ ++|++|+|++|. ++ .-.-..+.
T Consensus 62 ~L~~LDLs~~~Itd----~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT-D~Gl~~L~ 136 (176)
T 3e4g_A 62 KIQAIDATDSCIMS----IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT-DKGIIALH 136 (176)
T ss_dssp CEEEEEEESCCCCG----GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC-HHHHHHGG
T ss_pred eEeEEeCcCCCccH----HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC-HHHHHHHh
Confidence 46666666665531 111234556666666666664 554433444443 356666666653 44 21112355
Q ss_pred CCCCCCEEECcCcc
Q 003888 121 HLTSIEELMLSNNH 134 (788)
Q Consensus 121 ~l~~L~~L~Ls~n~ 134 (788)
++++|++|++++|.
T Consensus 137 ~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 137 HFRNLKYLFLSDLP 150 (176)
T ss_dssp GCTTCCEEEEESCT
T ss_pred cCCCCCEEECCCCC
Confidence 66666666666664
No 160
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.99 E-value=3.5e-06 Score=73.29 Aligned_cols=97 Identities=15% Similarity=0.125 Sum_probs=60.0
Q ss_pred CeEeCCCCcCC-ccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCC-CcccccCCCCccccC
Q 003888 618 QTLNLSHNNLT-GLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIP-EWTAQFATFNESSYE 695 (788)
Q Consensus 618 ~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p-~~~~~~~~~~~~~~~ 695 (788)
..++.++++++ ..+|..+. ++|++|+|++|+|+...+..|..+++|+.|+|++|++.+... .|+..|..-......
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~~~~~~ 88 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAP 88 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTSSCSGG
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHHhCccccc
Confidence 47888888887 23454432 468899999999987767778888888888888888876332 112221110000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccCCCCC
Q 003888 696 GNTFLCGLPLPICRSPATMSEASIGNER 723 (788)
Q Consensus 696 gn~~~c~~~l~~c~~~~~~~~~~~~~~~ 723 (788)
.....|.+|....|+.+....
T Consensus 89 -------~~~~~C~~P~~l~g~~l~~l~ 109 (130)
T 3rfe_A 89 -------YRDLRCVAPPALRGRLLPYLA 109 (130)
T ss_dssp -------GTTCBCCBSTTTTTCBGGGCC
T ss_pred -------ccCcEeCcChHHcCCCcccCC
Confidence 011268888888877655444
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.97 E-value=1.2e-06 Score=79.72 Aligned_cols=83 Identities=11% Similarity=0.108 Sum_probs=69.1
Q ss_pred cccEEECCCCcccccCcccccCcccCCeEeCCCCc-CCccCCccccCC----CCCCEEECcCCc-ccccCCccccCCCCC
Q 003888 592 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN-LTGLIPSTFSNL----KHIESLDLSYNK-LNGKIPHQLVELKTL 665 (788)
Q Consensus 592 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~L 665 (788)
.|+.||+++|.++...-..+..+++|++|+|++|. |++..-..+..+ ++|++|+|++|. |++.--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 69999999999988777778999999999999995 776544455554 479999999985 876555677889999
Q ss_pred CEEEccCCc
Q 003888 666 AVFSVAYNN 674 (788)
Q Consensus 666 ~~L~l~~N~ 674 (788)
+.|++++++
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 999999986
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.66 E-value=1.5e-05 Score=73.92 Aligned_cols=117 Identities=20% Similarity=0.238 Sum_probs=75.4
Q ss_pred cCCCCcEEeCCCC-CCCCCCCCCCcccccCCCCCCEEEcCCCCCCcC----CChhhcCCCCCCEEECCCCcCcCc----C
Q 003888 44 SMPSLKYLSMSDS-TLGTNSSRILDQGLCSLMHLQELYIDNNDLRGS----LPWCLANMTSLRILDVSSNQLTGS----I 114 (788)
Q Consensus 44 ~l~~L~~L~Ls~~-~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~~~~~----i 114 (788)
.-+.|++|+|+++ .+++.+.....+++..-+.|++|+|++|++.+. +.+++..-+.|++|+|++|.|.+. +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 5678888888875 664322233334566777888888888888754 445556678888888888888622 2
Q ss_pred ChhhhcCCCCCCEEECcCcc---cccc---CCccccccCCCCcEEEccCcccc
Q 003888 115 SSSPLVHLTSIEELMLSNNH---FQIP---ISLEPLFNHSRLKIFDAANNEIK 161 (788)
Q Consensus 115 ~~~~l~~l~~L~~L~Ls~n~---l~~~---~~~~~l~~l~~L~~L~l~~n~~~ 161 (788)
.. .+..-+.|++|+|++|. +... .-...+..-+.|++|+++.+.+.
T Consensus 119 a~-aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 119 LR-STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HH-HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HH-HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 22 45555678888887652 2211 01134566678888888877644
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.47 E-value=2.3e-05 Score=72.73 Aligned_cols=116 Identities=11% Similarity=0.127 Sum_probs=66.1
Q ss_pred CCCCCccEEEcccCCc-ccccc----hhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcC-
Q 003888 16 PHFKSLDHLDMVFART-ALNTS----FLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGS- 89 (788)
Q Consensus 16 ~~~~~L~~L~L~~~~~-~~~~~----~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~- 89 (788)
.+=+.|+.|+| +++ ++... +.+++. .-++|++|+|++|.+++.+....++.+..-+.|++|+|+.|.|.+.
T Consensus 38 ~~n~~L~~L~L--~~nn~igd~ga~~la~aL~-~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 38 EDDTDLKEVNI--NNMKRVSKERIRSLIEAAC-NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp TTCSSCCEEEC--TTCCSSCHHHHHHHHHHHT-TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred hcCCCccEEEC--CCCCCCCHHHHHHHHHHHh-hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 34456777777 664 55432 345555 5567777777777775433333334455556677777777777643
Q ss_pred ---CChhhcCCCCCCEEECCCC---cCcC----cCChhhhcCCCCCCEEECcCccc
Q 003888 90 ---LPWCLANMTSLRILDVSSN---QLTG----SISSSPLVHLTSIEELMLSNNHF 135 (788)
Q Consensus 90 ---~~~~l~~l~~L~~L~Ls~n---~~~~----~i~~~~l~~l~~L~~L~Ls~n~l 135 (788)
+.+++..-+.|++|+|+++ .+.. .+.. .+..-+.|++|+++.|.+
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCCCc
Confidence 3344555566777777654 2221 1222 445556777777766643
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.03 E-value=0.0012 Score=57.02 Aligned_cols=58 Identities=24% Similarity=0.302 Sum_probs=46.5
Q ss_pred cEEECCCCccc-ccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccc
Q 003888 594 SGLDLSCNKLI-GHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG 653 (788)
Q Consensus 594 ~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 653 (788)
..++.+++.++ ..+|..+. ++|+.|+|++|+|+.+.++.|..+++|+.|+|++|++.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 47888888886 35565443 468899999999998888888999999999999998865
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=63.82 E-value=14 Score=29.52 Aligned_cols=45 Identities=24% Similarity=0.228 Sum_probs=22.2
Q ss_pred CCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccC
Q 003888 335 LKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNN 380 (788)
Q Consensus 335 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 380 (788)
++.+....|.++.+|+.+.+..+ ++.+...+|.+|.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34444445555555555555443 2224444555555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=62.17 E-value=8.3 Score=30.82 Aligned_cols=45 Identities=22% Similarity=0.244 Sum_probs=24.9
Q ss_pred ccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcC
Q 003888 603 LIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSY 648 (788)
Q Consensus 603 l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 648 (788)
++.+...+|.++++|+++.+-.+ ++.+...+|.++.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 44444555666666666666543 4444455566666666665544
No 167
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=22.35 E-value=25 Score=22.16 Aligned_cols=10 Identities=0% Similarity=-0.167 Sum_probs=3.8
Q ss_pred hhhhhhHHHH
Q 003888 737 FTTSYVVVIF 746 (788)
Q Consensus 737 ~~~~~~~~~~ 746 (788)
+.++.++++.
T Consensus 16 iVvG~v~gv~ 25 (38)
T 2k1k_A 16 VIFGLLLGAA 25 (38)
T ss_dssp HHHHHHHHHH
T ss_pred eehHHHHHHH
Confidence 3334333333
Done!