Query 003889
Match_columns 788
No_of_seqs 472 out of 2680
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 13:49:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003889.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003889hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0474 Cl- channel CLC-7 and 100.0 2E-158 5E-163 1277.2 45.8 691 39-757 51-748 (762)
2 KOG0475 Cl- channel CLC-3 and 100.0 3.4E-85 7.3E-90 711.5 39.3 589 79-755 58-694 (696)
3 KOG0476 Cl- channel CLC-2 and 100.0 2.3E-86 5E-91 728.7 30.2 647 58-757 78-859 (931)
4 cd03685 ClC_6_like ClC-6-like 100.0 3E-77 6.6E-82 675.8 45.7 461 44-576 1-462 (466)
5 PRK01862 putative voltage-gate 100.0 4.3E-75 9.3E-80 679.4 57.7 543 77-757 26-572 (574)
6 cd03684 ClC_3_like ClC-3-like 100.0 5.3E-68 1.2E-72 597.8 39.2 412 83-573 1-445 (445)
7 cd03683 ClC_1_like ClC-1-like 100.0 2.5E-66 5.5E-71 581.7 39.7 415 76-575 2-426 (426)
8 cd01036 ClC_euk Chloride chann 100.0 2.3E-65 4.9E-70 572.8 37.2 407 83-562 1-416 (416)
9 cd01031 EriC ClC chloride chan 100.0 3.8E-58 8.3E-63 514.3 40.0 401 82-566 1-402 (402)
10 PRK01610 putative voltage-gate 100.0 1.4E-57 3E-62 508.8 40.6 411 74-568 3-417 (418)
11 PRK05277 chloride channel prot 100.0 7.3E-57 1.6E-61 508.7 43.8 411 77-568 2-417 (438)
12 COG0038 EriC Chloride channel 100.0 1.3E-54 2.8E-59 487.3 40.4 411 75-572 22-435 (443)
13 PF00654 Voltage_CLC: Voltage 100.0 5E-55 1.1E-59 481.0 31.8 348 130-554 2-354 (355)
14 cd01034 EriC_like ClC chloride 100.0 2.7E-54 5.8E-59 480.7 37.3 386 87-562 1-390 (390)
15 cd01033 ClC_like Putative ClC 100.0 3.3E-54 7.2E-59 478.5 37.7 385 83-557 1-387 (388)
16 cd00400 Voltage_gated_ClC CLC 100.0 1.7E-51 3.8E-56 458.5 37.1 383 83-550 1-383 (383)
17 cd03682 ClC_sycA_like ClC sycA 100.0 1.6E-48 3.5E-53 432.2 37.6 375 79-562 2-378 (378)
18 PRK03655 putative ion channel 100.0 1.5E-45 3.2E-50 409.7 36.3 383 73-553 10-397 (414)
19 COG3448 CBS-domain-containing 99.7 1.2E-16 2.7E-21 161.3 16.2 133 581-758 242-374 (382)
20 cd01034 EriC_like ClC chloride 99.7 9.2E-16 2E-20 171.4 19.6 183 74-284 200-382 (390)
21 cd01033 ClC_like Putative ClC 99.7 5.3E-16 1.2E-20 172.9 15.4 183 75-285 204-386 (388)
22 PRK05277 chloride channel prot 99.6 4.8E-15 1E-19 168.2 16.4 189 74-284 215-403 (438)
23 COG2524 Predicted transcriptio 99.6 7.6E-15 1.6E-19 146.3 12.0 123 581-756 169-291 (294)
24 PRK10892 D-arabinose 5-phospha 99.6 4.2E-14 9.2E-19 154.7 15.4 147 557-754 169-323 (326)
25 PRK11543 gutQ D-arabinose 5-ph 99.6 5.7E-14 1.2E-18 153.4 16.0 148 557-754 164-318 (321)
26 cd00400 Voltage_gated_ClC CLC 99.5 4E-14 8.6E-19 158.3 14.0 178 73-276 203-380 (383)
27 COG4109 Predicted transcriptio 99.5 1.4E-14 2.9E-19 150.1 8.6 174 510-759 134-309 (432)
28 PRK01862 putative voltage-gate 99.5 7.2E-14 1.6E-18 164.2 14.9 182 76-284 239-421 (574)
29 PRK01610 putative voltage-gate 99.5 1.4E-13 2.9E-18 154.8 15.5 184 74-284 219-403 (418)
30 cd03682 ClC_sycA_like ClC sycA 99.5 1.1E-12 2.4E-17 146.1 16.3 171 74-281 198-370 (378)
31 COG3620 Predicted transcriptio 99.4 5E-13 1.1E-17 123.9 11.0 123 582-757 63-185 (187)
32 cd01031 EriC ClC chloride chan 99.4 7.3E-13 1.6E-17 148.9 14.5 187 73-284 204-390 (402)
33 cd04641 CBS_pair_28 The CBS do 99.4 1.3E-12 2.9E-17 120.8 13.3 118 595-754 3-120 (120)
34 cd04618 CBS_pair_5 The CBS dom 99.4 1.2E-12 2.6E-17 117.0 11.9 94 595-753 3-97 (98)
35 cd04603 CBS_pair_KefB_assoc Th 99.4 1.6E-12 3.4E-17 118.7 12.8 108 595-753 3-110 (111)
36 cd04619 CBS_pair_6 The CBS dom 99.4 2E-12 4.4E-17 118.5 12.7 111 595-753 3-113 (114)
37 PRK07807 inosine 5-monophospha 99.4 1.5E-12 3.3E-17 147.4 12.7 144 558-757 58-206 (479)
38 PRK15094 magnesium/cobalt effl 99.4 2.7E-12 5.9E-17 137.3 12.5 130 581-762 64-195 (292)
39 cd04631 CBS_pair_18 The CBS do 99.4 7.2E-12 1.6E-16 116.4 12.5 122 595-754 3-125 (125)
40 cd04600 CBS_pair_HPP_assoc Thi 99.4 7.4E-12 1.6E-16 116.1 12.4 121 595-754 4-124 (124)
41 cd04639 CBS_pair_26 The CBS do 99.4 8.1E-12 1.8E-16 113.5 12.3 109 595-754 3-111 (111)
42 TIGR03520 GldE gliding motilit 99.3 4.9E-12 1.1E-16 141.8 13.0 128 581-762 188-317 (408)
43 cd04630 CBS_pair_17 The CBS do 99.3 1.6E-11 3.4E-16 112.4 13.4 111 595-754 3-114 (114)
44 cd04605 CBS_pair_MET2_assoc Th 99.3 1.8E-11 3.8E-16 111.0 13.3 106 595-753 4-109 (110)
45 cd04586 CBS_pair_BON_assoc Thi 99.3 7.8E-12 1.7E-16 118.2 11.2 132 595-754 4-135 (135)
46 cd04596 CBS_pair_DRTGG_assoc T 99.3 9.1E-12 2E-16 112.8 11.1 104 595-753 4-107 (108)
47 cd04617 CBS_pair_4 The CBS dom 99.3 1.7E-11 3.7E-16 113.1 12.9 110 595-753 3-117 (118)
48 cd04593 CBS_pair_EriC_assoc_ba 99.3 1.9E-11 4.1E-16 112.0 13.0 111 595-754 3-115 (115)
49 cd04608 CBS_pair_PALP_assoc Th 99.3 8.8E-12 1.9E-16 116.4 10.2 111 595-754 4-123 (124)
50 cd04607 CBS_pair_NTP_transfera 99.3 2.4E-11 5.3E-16 110.9 13.0 109 595-753 4-112 (113)
51 cd04595 CBS_pair_DHH_polyA_Pol 99.3 2.7E-11 5.9E-16 109.9 13.2 106 595-753 4-109 (110)
52 cd04627 CBS_pair_14 The CBS do 99.3 2.1E-11 4.6E-16 113.2 12.6 118 595-752 3-121 (123)
53 cd04801 CBS_pair_M50_like This 99.3 1.9E-11 4.1E-16 111.8 11.9 108 595-753 3-113 (114)
54 cd04623 CBS_pair_10 The CBS do 99.3 3.1E-11 6.6E-16 109.7 13.1 111 595-754 3-113 (113)
55 cd04613 CBS_pair_SpoIVFB_EriC_ 99.3 2.3E-11 5.1E-16 110.7 12.3 110 595-753 3-113 (114)
56 cd04803 CBS_pair_15 The CBS do 99.3 2.1E-11 4.5E-16 112.8 12.0 120 595-754 3-122 (122)
57 cd04583 CBS_pair_ABC_OpuCA_ass 99.3 3.4E-11 7.3E-16 108.8 13.1 105 595-753 4-108 (109)
58 cd04624 CBS_pair_11 The CBS do 99.3 4.6E-11 1E-15 108.7 13.3 109 595-753 3-111 (112)
59 PRK07107 inosine 5-monophospha 99.3 2.5E-11 5.3E-16 138.4 13.9 147 559-756 66-220 (502)
60 cd04629 CBS_pair_16 The CBS do 99.3 2.6E-11 5.7E-16 110.6 11.3 111 595-753 3-113 (114)
61 cd04590 CBS_pair_CorC_HlyC_ass 99.3 4.9E-11 1.1E-15 108.3 12.7 107 595-753 3-110 (111)
62 cd04588 CBS_pair_CAP-ED_DUF294 99.3 6E-11 1.3E-15 107.5 13.3 107 595-753 3-109 (110)
63 cd04614 CBS_pair_1 The CBS dom 99.3 4E-11 8.6E-16 106.6 11.8 94 595-754 3-96 (96)
64 cd04636 CBS_pair_23 The CBS do 99.3 4.6E-11 1E-15 112.5 12.4 127 595-754 3-132 (132)
65 cd04642 CBS_pair_29 The CBS do 99.3 5.3E-11 1.2E-15 111.1 12.7 123 595-753 3-125 (126)
66 cd04626 CBS_pair_13 The CBS do 99.3 5.5E-11 1.2E-15 108.1 12.3 108 595-753 3-110 (111)
67 TIGR00400 mgtE Mg2+ transporte 99.3 2E-11 4.4E-16 138.8 11.5 124 582-761 129-257 (449)
68 cd04615 CBS_pair_2 The CBS dom 99.3 6E-11 1.3E-15 108.1 12.5 110 595-753 3-112 (113)
69 cd04635 CBS_pair_22 The CBS do 99.3 3.9E-11 8.4E-16 111.0 11.3 120 595-754 3-122 (122)
70 cd04582 CBS_pair_ABC_OpuCA_ass 99.3 6.5E-11 1.4E-15 106.5 12.4 103 595-753 3-105 (106)
71 TIGR01137 cysta_beta cystathio 99.3 6E-11 1.3E-15 135.9 15.1 147 556-755 306-453 (454)
72 cd04643 CBS_pair_30 The CBS do 99.2 6.1E-11 1.3E-15 108.5 11.8 114 595-754 3-116 (116)
73 cd04604 CBS_pair_KpsF_GutQ_ass 99.2 7.4E-11 1.6E-15 107.5 12.1 110 595-753 4-113 (114)
74 cd04632 CBS_pair_19 The CBS do 99.2 8.1E-11 1.7E-15 110.1 12.6 124 595-754 3-128 (128)
75 cd04611 CBS_pair_PAS_GGDEF_DUF 99.2 1.2E-10 2.6E-15 105.5 13.4 108 595-753 3-110 (111)
76 cd04620 CBS_pair_7 The CBS dom 99.2 8.9E-11 1.9E-15 107.4 12.4 109 595-753 3-114 (115)
77 TIGR01303 IMP_DH_rel_1 IMP deh 99.2 4.2E-11 9E-16 135.7 12.3 122 580-758 84-205 (475)
78 cd04585 CBS_pair_ACT_assoc2 Th 99.2 9.1E-11 2E-15 108.0 12.4 119 595-753 3-121 (122)
79 cd04612 CBS_pair_SpoIVFB_EriC_ 99.2 1.4E-10 2.9E-15 105.2 13.0 108 595-753 3-110 (111)
80 TIGR01302 IMP_dehydrog inosine 99.2 6.4E-11 1.4E-15 134.5 13.1 119 583-756 79-201 (450)
81 cd04599 CBS_pair_GGDEF_assoc2 99.2 9.3E-11 2E-15 105.2 11.6 102 595-753 3-104 (105)
82 cd04640 CBS_pair_27 The CBS do 99.2 5.9E-11 1.3E-15 110.9 10.6 116 595-753 3-125 (126)
83 cd04621 CBS_pair_8 The CBS dom 99.2 1.1E-10 2.4E-15 110.8 12.5 132 595-753 3-134 (135)
84 cd04601 CBS_pair_IMPDH This cd 99.2 7E-11 1.5E-15 106.9 10.7 105 595-753 4-109 (110)
85 cd04622 CBS_pair_9 The CBS dom 99.2 1.8E-10 3.9E-15 104.8 13.4 110 595-753 3-112 (113)
86 cd04637 CBS_pair_24 The CBS do 99.2 1E-10 2.2E-15 108.3 11.8 120 595-754 3-122 (122)
87 cd04587 CBS_pair_CAP-ED_DUF294 99.2 1.7E-10 3.6E-15 105.0 13.0 110 595-753 3-112 (113)
88 cd04591 CBS_pair_EriC_assoc_eu 99.2 1.7E-10 3.6E-15 104.4 12.8 102 595-754 4-105 (105)
89 cd04800 CBS_pair_CAP-ED_DUF294 99.2 1.9E-10 4.1E-15 104.5 12.9 108 595-753 3-110 (111)
90 PF00654 Voltage_CLC: Voltage 99.2 2.4E-10 5.1E-15 126.5 16.1 185 75-283 163-354 (355)
91 PRK05567 inosine 5'-monophosph 99.2 1.1E-10 2.4E-15 134.0 13.1 118 584-756 87-205 (486)
92 cd02205 CBS_pair The CBS domai 99.2 2.4E-10 5.1E-15 102.9 12.7 110 595-753 3-112 (113)
93 cd04625 CBS_pair_12 The CBS do 99.2 2.8E-10 6E-15 103.5 13.0 110 595-754 3-112 (112)
94 cd04602 CBS_pair_IMPDH_2 This 99.2 2.3E-10 4.9E-15 104.7 12.0 108 595-753 4-113 (114)
95 cd04589 CBS_pair_CAP-ED_DUF294 99.2 3.7E-10 8E-15 102.6 13.3 109 595-754 3-111 (111)
96 cd04610 CBS_pair_ParBc_assoc T 99.2 2.4E-10 5.3E-15 102.9 11.9 103 595-753 4-106 (107)
97 PRK14869 putative manganese-de 99.2 1.7E-10 3.6E-15 135.1 13.8 169 584-757 68-305 (546)
98 TIGR00393 kpsF KpsF/GutQ famil 99.2 1.6E-10 3.5E-15 122.9 12.3 115 583-747 154-268 (268)
99 cd04609 CBS_pair_PALP_assoc2 T 99.2 3.3E-10 7.2E-15 102.3 12.4 108 595-754 3-110 (110)
100 COG0038 EriC Chloride channel 99.2 4.7E-10 1E-14 127.0 16.2 181 77-285 236-418 (443)
101 cd04584 CBS_pair_ACT_assoc Thi 99.2 2.7E-10 5.9E-15 105.0 11.8 118 595-753 3-120 (121)
102 PLN02274 inosine-5'-monophosph 99.2 1.8E-10 4E-15 131.6 12.8 116 590-757 106-223 (505)
103 cd04606 CBS_pair_Mg_transporte 99.2 1.6E-10 3.5E-15 104.8 10.0 102 598-754 2-108 (109)
104 COG0517 FOG: CBS domain [Gener 99.2 5.5E-10 1.2E-14 102.2 13.6 113 588-752 3-117 (117)
105 PTZ00314 inosine-5'-monophosph 99.2 1.5E-10 3.3E-15 132.2 11.7 120 585-756 97-218 (495)
106 PRK03655 putative ion channel 99.1 8.1E-10 1.8E-14 123.8 17.2 172 75-282 222-397 (414)
107 cd04802 CBS_pair_3 The CBS dom 99.1 7.1E-10 1.5E-14 100.8 13.7 109 595-753 3-111 (112)
108 cd04633 CBS_pair_20 The CBS do 99.1 3.5E-10 7.6E-15 104.4 11.8 119 595-754 3-121 (121)
109 cd04594 CBS_pair_EriC_assoc_ar 99.1 5.4E-10 1.2E-14 100.5 12.7 100 596-753 4-103 (104)
110 cd03684 ClC_3_like ClC-3-like 99.1 7.7E-10 1.7E-14 125.7 16.3 194 74-285 205-427 (445)
111 PRK11573 hypothetical protein; 99.1 5.9E-10 1.3E-14 125.1 14.0 134 581-763 184-318 (413)
112 cd04638 CBS_pair_25 The CBS do 99.1 9.2E-10 2E-14 99.2 11.7 103 595-753 3-105 (106)
113 cd04634 CBS_pair_21 The CBS do 99.1 1.3E-09 2.9E-14 104.3 12.9 135 595-753 3-142 (143)
114 cd04598 CBS_pair_GGDEF_assoc T 99.1 1.3E-09 2.8E-14 100.2 11.7 112 595-753 3-118 (119)
115 COG2905 Predicted signal-trans 99.0 1.2E-09 2.7E-14 120.6 11.4 126 581-757 146-271 (610)
116 COG1253 TlyC Hemolysins and re 99.0 2.8E-09 6E-14 120.7 14.3 133 581-764 203-336 (429)
117 COG2239 MgtE Mg/Co/Ni transpor 99.0 7.5E-10 1.6E-14 123.6 9.0 126 584-765 132-262 (451)
118 cd03685 ClC_6_like ClC-6-like 99.0 5.4E-09 1.2E-13 119.4 15.8 168 73-284 274-441 (466)
119 cd01036 ClC_euk Chloride chann 98.9 1.9E-08 4.1E-13 113.5 15.6 174 74-284 234-409 (416)
120 COG4536 CorB Putative Mg2+ and 98.9 8.7E-09 1.9E-13 108.8 9.6 131 581-760 197-328 (423)
121 PF00571 CBS: CBS domain CBS d 98.8 6.9E-09 1.5E-13 82.6 5.6 55 702-756 2-56 (57)
122 cd04592 CBS_pair_EriC_assoc_eu 98.8 3.7E-08 8E-13 93.2 10.8 116 595-739 3-118 (133)
123 COG4535 CorC Putative Mg2+ and 98.8 1.5E-08 3.2E-13 100.4 7.3 132 581-763 64-196 (293)
124 cd03683 ClC_1_like ClC-1-like 98.7 1.5E-07 3.4E-12 106.4 14.8 172 74-284 230-406 (426)
125 PF00571 CBS: CBS domain CBS d 98.5 2.2E-07 4.8E-12 73.9 7.0 56 586-646 1-56 (57)
126 KOG1764 5'-AMP-activated prote 98.5 6.9E-07 1.5E-11 98.9 10.6 123 595-759 239-362 (381)
127 TIGR01186 proV glycine betaine 98.4 1.7E-06 3.6E-11 95.6 13.3 109 595-758 252-360 (363)
128 PRK10070 glycine betaine trans 98.4 1.7E-06 3.7E-11 96.7 12.4 120 584-758 274-395 (400)
129 COG3448 CBS-domain-containing 98.4 3.9E-07 8.3E-12 93.3 6.0 185 503-755 109-301 (382)
130 KOG2550 IMP dehydrogenase/GMP 98.3 1.7E-06 3.7E-11 92.3 7.8 111 595-756 118-228 (503)
131 cd04597 CBS_pair_DRTGG_assoc2 98.0 1.4E-05 2.9E-10 73.3 6.0 55 699-753 58-112 (113)
132 cd04597 CBS_pair_DRTGG_assoc2 97.9 3.6E-05 7.7E-10 70.5 7.2 54 584-642 58-111 (113)
133 PRK14869 putative manganese-de 97.8 1E-05 2.2E-10 95.0 3.6 141 582-754 244-391 (546)
134 TIGR00400 mgtE Mg2+ transporte 97.7 2.9E-05 6.3E-10 88.7 5.5 112 584-756 195-306 (449)
135 COG3620 Predicted transcriptio 97.7 2.9E-05 6.2E-10 73.0 3.6 62 697-759 63-124 (187)
136 COG2524 Predicted transcriptio 97.6 0.00012 2.5E-09 74.4 6.4 59 583-646 233-291 (294)
137 cd04641 CBS_pair_28 The CBS do 97.6 0.00018 3.8E-09 66.1 6.9 49 708-756 2-50 (120)
138 cd04618 CBS_pair_5 The CBS dom 97.6 0.00015 3.2E-09 64.6 6.0 47 709-755 3-50 (98)
139 smart00116 CBS Domain in cysta 97.5 0.0002 4.2E-09 53.4 5.7 47 709-755 2-48 (49)
140 cd04603 CBS_pair_KefB_assoc Th 97.5 0.00017 3.8E-09 65.3 5.9 55 584-643 56-110 (111)
141 KOG0475 Cl- channel CLC-3 and 97.5 0.0005 1.1E-08 77.7 10.3 188 77-281 310-512 (696)
142 cd04614 CBS_pair_1 The CBS dom 97.4 0.00031 6.8E-09 62.1 6.5 48 708-755 2-49 (96)
143 cd04619 CBS_pair_6 The CBS dom 97.4 0.00028 6.1E-09 64.2 6.1 56 583-643 58-113 (114)
144 cd04592 CBS_pair_EriC_assoc_eu 97.4 0.00037 8E-09 65.9 6.9 49 708-756 2-50 (133)
145 cd04608 CBS_pair_PALP_assoc Th 97.4 0.00042 9.2E-09 64.4 6.7 50 707-756 2-51 (124)
146 PRK05567 inosine 5'-monophosph 97.3 0.00083 1.8E-08 77.6 9.4 57 584-645 147-204 (486)
147 cd04617 CBS_pair_4 The CBS dom 97.3 0.00042 9.2E-09 63.5 5.4 56 583-643 57-117 (118)
148 PRK10892 D-arabinose 5-phospha 97.2 0.00057 1.2E-08 74.9 6.5 59 698-756 201-261 (326)
149 PRK11543 gutQ D-arabinose 5-ph 97.2 0.00053 1.1E-08 75.0 6.2 58 699-756 197-256 (321)
150 cd04582 CBS_pair_ABC_OpuCA_ass 97.2 0.00088 1.9E-08 59.7 6.5 48 708-755 2-49 (106)
151 cd04605 CBS_pair_MET2_assoc Th 97.2 0.001 2.2E-08 59.8 6.9 50 707-756 2-51 (110)
152 cd04624 CBS_pair_11 The CBS do 97.2 0.00098 2.1E-08 60.1 6.7 50 708-757 2-51 (112)
153 cd04613 CBS_pair_SpoIVFB_EriC_ 97.1 0.001 2.2E-08 60.0 6.3 49 708-756 2-50 (114)
154 cd04607 CBS_pair_NTP_transfera 97.1 0.0011 2.3E-08 60.1 6.3 54 584-642 58-111 (113)
155 cd04643 CBS_pair_30 The CBS do 97.1 0.0011 2.4E-08 60.0 6.5 49 708-756 2-50 (116)
156 cd04623 CBS_pair_10 The CBS do 97.1 0.0014 3E-08 59.0 6.7 50 708-757 2-51 (113)
157 cd04620 CBS_pair_7 The CBS dom 97.1 0.0011 2.4E-08 60.1 6.1 55 584-643 58-114 (115)
158 cd04600 CBS_pair_HPP_assoc Thi 97.1 0.0011 2.4E-08 61.0 6.1 56 583-643 68-123 (124)
159 cd04606 CBS_pair_Mg_transporte 97.1 0.0012 2.6E-08 59.3 6.3 57 583-644 52-108 (109)
160 cd04593 CBS_pair_EriC_assoc_ba 97.1 0.0014 3.1E-08 59.4 6.8 49 708-756 2-50 (115)
161 cd04642 CBS_pair_29 The CBS do 97.0 0.001 2.2E-08 61.7 5.7 49 708-756 2-50 (126)
162 cd04585 CBS_pair_ACT_assoc2 Th 97.0 0.0014 3E-08 59.8 6.4 57 582-643 65-121 (122)
163 cd04596 CBS_pair_DRTGG_assoc T 97.0 0.0014 3.1E-08 58.7 6.4 56 583-643 52-107 (108)
164 cd04615 CBS_pair_2 The CBS dom 97.0 0.0016 3.5E-08 58.7 6.6 55 583-642 57-111 (113)
165 cd04625 CBS_pair_12 The CBS do 97.0 0.0018 3.8E-08 58.4 6.8 54 584-643 58-111 (112)
166 cd04640 CBS_pair_27 The CBS do 97.0 0.0016 3.4E-08 60.5 6.5 46 708-753 2-47 (126)
167 cd04627 CBS_pair_14 The CBS do 97.0 0.0012 2.6E-08 60.9 5.5 52 586-642 70-121 (123)
168 cd04632 CBS_pair_19 The CBS do 97.0 0.0018 3.9E-08 60.0 6.8 48 708-755 2-49 (128)
169 cd04586 CBS_pair_BON_assoc Thi 97.0 0.0014 3.1E-08 61.4 6.1 50 707-756 2-51 (135)
170 TIGR01137 cysta_beta cystathio 97.0 0.0014 3E-08 75.3 7.1 59 698-756 334-392 (454)
171 COG2905 Predicted signal-trans 97.0 0.00092 2E-08 75.0 5.2 64 700-763 150-213 (610)
172 cd04801 CBS_pair_M50_like This 96.9 0.0017 3.6E-08 58.9 6.1 49 708-756 2-51 (114)
173 cd04636 CBS_pair_23 The CBS do 96.9 0.0014 3E-08 61.3 5.7 50 708-757 2-51 (132)
174 TIGR03415 ABC_choXWV_ATP choli 96.9 0.0027 5.8E-08 70.8 8.8 50 705-756 331-380 (382)
175 TIGR00393 kpsF KpsF/GutQ famil 96.9 0.0012 2.7E-08 70.0 6.0 59 698-756 154-213 (268)
176 cd04630 CBS_pair_17 The CBS do 96.9 0.002 4.3E-08 58.4 6.6 55 583-643 59-113 (114)
177 cd04610 CBS_pair_ParBc_assoc T 96.9 0.0021 4.5E-08 57.3 6.4 55 584-643 52-106 (107)
178 cd04629 CBS_pair_16 The CBS do 96.9 0.0017 3.7E-08 58.6 5.8 49 708-756 2-50 (114)
179 cd04621 CBS_pair_8 The CBS dom 96.9 0.0024 5.3E-08 60.2 7.0 55 583-643 80-134 (135)
180 cd04802 CBS_pair_3 The CBS dom 96.9 0.0024 5.3E-08 57.5 6.6 54 583-642 57-110 (112)
181 cd04588 CBS_pair_CAP-ED_DUF294 96.9 0.0026 5.6E-08 57.1 6.8 48 708-756 2-49 (110)
182 cd04602 CBS_pair_IMPDH_2 This 96.9 0.0023 4.9E-08 58.1 6.3 55 584-643 57-113 (114)
183 cd04604 CBS_pair_KpsF_GutQ_ass 96.9 0.0022 4.8E-08 57.8 6.2 55 584-643 59-113 (114)
184 cd04635 CBS_pair_22 The CBS do 96.8 0.0024 5.2E-08 58.5 6.4 57 582-643 65-121 (122)
185 cd04639 CBS_pair_26 The CBS do 96.8 0.0021 4.6E-08 57.7 5.9 55 584-643 56-110 (111)
186 cd04803 CBS_pair_15 The CBS do 96.8 0.0026 5.7E-08 58.2 6.5 57 582-643 65-121 (122)
187 COG4175 ProV ABC-type proline/ 96.8 0.0019 4E-08 68.2 5.9 113 581-757 271-384 (386)
188 cd04587 CBS_pair_CAP-ED_DUF294 96.8 0.0022 4.8E-08 57.8 5.8 54 584-642 58-111 (113)
189 cd04609 CBS_pair_PALP_assoc2 T 96.8 0.0027 5.9E-08 56.7 6.2 48 708-756 2-49 (110)
190 smart00116 CBS Domain in cysta 96.8 0.0037 8E-08 46.3 6.0 47 595-645 2-48 (49)
191 cd04611 CBS_pair_PAS_GGDEF_DUF 96.8 0.0029 6.3E-08 56.7 6.4 56 583-643 55-110 (111)
192 PRK07107 inosine 5-monophospha 96.8 0.0026 5.7E-08 73.2 7.3 57 583-644 160-218 (502)
193 cd04583 CBS_pair_ABC_OpuCA_ass 96.8 0.0029 6.2E-08 56.5 6.2 54 584-642 54-107 (109)
194 cd04590 CBS_pair_CorC_HlyC_ass 96.8 0.0031 6.8E-08 56.6 6.5 50 708-757 2-52 (111)
195 cd02205 CBS_pair The CBS domai 96.8 0.0036 7.7E-08 55.6 6.7 50 708-757 2-51 (113)
196 cd04584 CBS_pair_ACT_assoc Thi 96.7 0.0026 5.7E-08 58.1 5.8 48 708-755 2-49 (121)
197 cd04601 CBS_pair_IMPDH This cd 96.7 0.0029 6.2E-08 56.6 5.9 55 583-642 53-108 (110)
198 cd04622 CBS_pair_9 The CBS dom 96.7 0.0026 5.7E-08 57.3 5.7 55 584-643 58-112 (113)
199 cd04631 CBS_pair_18 The CBS do 96.7 0.0033 7.1E-08 57.8 6.4 56 583-643 69-124 (125)
200 cd04626 CBS_pair_13 The CBS do 96.7 0.0035 7.5E-08 56.4 6.3 49 708-756 2-50 (111)
201 cd04800 CBS_pair_CAP-ED_DUF294 96.7 0.0033 7.2E-08 56.5 6.1 55 583-643 56-110 (111)
202 PRK07807 inosine 5-monophospha 96.7 0.0035 7.5E-08 71.8 7.6 59 584-647 148-206 (479)
203 KOG1764 5'-AMP-activated prote 96.7 0.0065 1.4E-07 67.6 9.4 124 595-757 164-287 (381)
204 cd04595 CBS_pair_DHH_polyA_Pol 96.7 0.0043 9.3E-08 55.7 6.7 54 583-642 55-108 (110)
205 cd04633 CBS_pair_20 The CBS do 96.7 0.004 8.6E-08 56.9 6.4 56 582-643 65-120 (121)
206 cd04589 CBS_pair_CAP-ED_DUF294 96.7 0.0046 1E-07 55.6 6.6 55 583-643 56-110 (111)
207 TIGR01303 IMP_DH_rel_1 IMP deh 96.6 0.0042 9.1E-08 71.1 7.6 59 584-647 146-204 (475)
208 COG0517 FOG: CBS domain [Gener 96.6 0.0046 1E-07 56.0 6.6 52 585-641 63-116 (117)
209 cd04591 CBS_pair_EriC_assoc_eu 96.6 0.0042 9.1E-08 55.8 6.0 49 589-643 56-104 (105)
210 cd04612 CBS_pair_SpoIVFB_EriC_ 96.6 0.005 1.1E-07 55.2 6.5 55 584-643 56-110 (111)
211 cd04599 CBS_pair_GGDEF_assoc2 96.6 0.0052 1.1E-07 54.5 6.5 53 584-642 51-103 (105)
212 cd04594 CBS_pair_EriC_assoc_ar 96.6 0.0042 9.1E-08 55.4 5.7 53 585-643 51-103 (104)
213 cd04634 CBS_pair_21 The CBS do 96.6 0.0039 8.5E-08 59.3 5.8 48 708-756 2-49 (143)
214 TIGR01302 IMP_dehydrog inosine 96.6 0.0035 7.6E-08 71.7 6.3 57 698-754 79-138 (450)
215 cd04637 CBS_pair_24 The CBS do 96.5 0.006 1.3E-07 55.9 6.3 55 584-643 67-121 (122)
216 cd04598 CBS_pair_GGDEF_assoc T 96.4 0.0068 1.5E-07 55.1 6.2 47 708-755 2-49 (119)
217 COG4109 Predicted transcriptio 96.4 0.0074 1.6E-07 64.1 6.7 63 581-648 246-308 (432)
218 PLN02274 inosine-5'-monophosph 96.3 0.0095 2.1E-07 68.8 7.8 61 583-647 162-223 (505)
219 TIGR03520 GldE gliding motilit 96.2 0.0069 1.5E-07 68.4 6.1 57 700-756 192-251 (408)
220 PTZ00314 inosine-5'-monophosph 96.1 0.0092 2E-07 68.8 6.2 58 583-645 158-217 (495)
221 PRK15094 magnesium/cobalt effl 96.0 0.0094 2E-07 64.2 5.7 56 700-755 68-126 (292)
222 cd04638 CBS_pair_25 The CBS do 95.9 0.018 4E-07 51.2 6.0 53 585-643 53-105 (106)
223 COG2239 MgtE Mg/Co/Ni transpor 95.2 0.026 5.7E-07 63.8 5.7 62 582-648 194-255 (451)
224 TIGR01186 proV glycine betaine 94.7 0.063 1.4E-06 59.6 6.8 58 585-648 303-360 (363)
225 PRK11573 hypothetical protein; 93.1 0.2 4.4E-06 56.7 7.1 56 701-756 189-247 (413)
226 PRK10070 glycine betaine trans 93.1 0.19 4.2E-06 56.5 6.8 59 585-649 338-396 (400)
227 KOG2550 IMP dehydrogenase/GMP 92.4 0.14 3.1E-06 55.7 4.4 57 583-644 170-226 (503)
228 COG1253 TlyC Hemolysins and re 90.9 0.51 1.1E-05 53.8 7.1 59 701-759 208-269 (429)
229 KOG0474 Cl- channel CLC-7 and 90.8 0.35 7.6E-06 55.4 5.4 109 442-554 181-301 (762)
230 KOG2118 Predicted membrane pro 87.1 1.1 2.5E-05 51.7 6.4 132 581-762 201-334 (498)
231 KOG0476 Cl- channel CLC-2 and 86.7 0.47 1E-05 55.5 2.9 65 698-762 587-653 (931)
232 COG4535 CorC Putative Mg2+ and 84.0 0.24 5.1E-06 50.3 -0.9 49 710-758 80-129 (293)
233 COG1125 OpuBA ABC-type proline 83.5 1.8 3.9E-05 45.1 5.0 42 713-754 267-308 (309)
234 TIGR03415 ABC_choXWV_ATP choli 82.6 2.6 5.5E-05 47.3 6.4 55 585-647 327-381 (382)
235 COG4536 CorB Putative Mg2+ and 73.9 2 4.3E-05 46.8 2.1 52 709-760 212-264 (423)
236 COG4175 ProV ABC-type proline/ 73.1 6.5 0.00014 42.3 5.6 53 589-647 332-384 (386)
237 TIGR02865 spore_II_E stage II 64.4 3.5E+02 0.0076 33.4 21.6 83 480-566 197-289 (764)
238 PRK09765 PTS system 2-O-a-mann 58.9 3.5E+02 0.0075 32.7 17.1 21 170-190 457-477 (631)
239 PF10518 TAT_signal: TAT (twin 58.1 9 0.0002 25.2 2.0 23 228-250 3-25 (26)
240 COG1125 OpuBA ABC-type proline 50.2 27 0.00058 36.7 5.0 57 582-643 247-307 (309)
241 PRK02509 hypothetical protein; 46.8 2.7E+02 0.0058 34.9 13.4 21 317-337 325-345 (973)
242 PF01102 Glycophorin_A: Glycop 37.7 44 0.00094 31.0 3.9 17 320-336 66-82 (122)
243 PRK11388 DNA-binding transcrip 37.6 57 0.0012 39.2 6.1 121 584-747 41-162 (638)
244 PRK10478 putative PTS system f 30.6 7.9E+02 0.017 27.3 14.7 22 169-190 177-198 (359)
245 PRK01844 hypothetical protein; 29.9 1.2E+02 0.0026 25.3 4.8 21 317-337 4-24 (72)
246 PF10399 UCR_Fe-S_N: Ubiquitin 26.6 50 0.0011 24.4 1.9 20 225-244 7-28 (41)
247 KOG0236 Sulfate/bicarbonate/ox 25.1 3.2E+02 0.0068 33.2 9.4 19 228-246 361-379 (665)
248 PRK10712 PTS system fructose-s 24.5 8.2E+02 0.018 29.0 12.4 142 326-569 315-463 (563)
249 PF05198 IF3_N: Translation in 23.5 1.4E+02 0.0029 25.3 4.2 26 731-756 13-38 (76)
250 COG3817 Predicted membrane pro 22.6 1.4E+02 0.0031 31.1 4.9 26 500-525 245-270 (313)
251 PRK09400 secE preprotein trans 22.3 2.8E+02 0.006 22.5 5.5 28 71-98 30-58 (61)
252 PRK10490 sensor protein KdpD; 22.0 2.7E+02 0.0058 35.2 8.3 38 297-337 462-499 (895)
253 COG3763 Uncharacterized protei 21.5 2.3E+02 0.005 23.5 4.9 19 319-337 6-24 (71)
254 PRK14216 camphor resistance pr 20.8 2.1E+02 0.0045 26.9 5.4 19 229-247 6-24 (132)
255 COG4129 Predicted membrane pro 20.4 2.3E+02 0.0049 31.2 6.3 44 522-565 109-156 (332)
256 COG5336 Uncharacterized protei 20.2 2.2E+02 0.0049 25.7 5.0 46 272-335 48-93 (116)
257 KOG4267 Predicted membrane pro 20.1 1.4E+02 0.0031 26.9 3.8 46 475-521 28-73 (110)
No 1
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-158 Score=1277.22 Aligned_cols=691 Identities=54% Similarity=0.910 Sum_probs=639.4
Q ss_pred CCCCCCCcccccccchHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---
Q 003889 39 GSSSVESLDYEVIENYAYREEQAQRGKLYVGYSVVVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKS--- 115 (788)
Q Consensus 39 ~~~~~esldy~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~liGv~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~--- 115 (788)
++++|||||||++||+.|+|+||.+++.+.++|...||+++++||+++|++|.++|..+|++.++|+..+.+.+.+.
T Consensus 51 k~~~yESLDYei~ENdlf~e~~r~~~k~~~~~y~~~kW~~~~lIGi~TgLva~fidl~Ven~ag~Kf~~v~~~v~~~~s~ 130 (762)
T KOG0474|consen 51 KVCDYESLDYEICENDLFLEDWRTRDKKKGRRYEAVKWMVCFLIGICTGLVALFIDLFVENFAGLKFGVVQNSVEECRSQ 130 (762)
T ss_pred CCCCccccchhhhcchHHHHHHHhhcccceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999987776554
Q ss_pred ---hhhhHHHHHHHHHHHHHHHHHhhhccccccCCCCHHHHHHHHcCcccccchhhHHHHHHHHHHHHHhccCCcccccc
Q 003889 116 ---YFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEG 192 (788)
Q Consensus 116 ---~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~g~~~~~~l~~~~l~~K~~~~~lsv~sG~svG~EG 192 (788)
++..++.|.+++++++++++.++.+++|.|+||||||||+||||+++|+.+++||+++|++|++++|++|+.+||||
T Consensus 131 ~g~~~~~~l~~~g~Nl~lv~~as~lv~~iaP~AAGSGIPevK~YLNGV~iP~ivrl~TL~~Ki~Gvi~sV~gGL~~GKEG 210 (762)
T KOG0474|consen 131 KGCLALSLLVLLGFNLVLVFLASVLVAYIAPVAAGSGIPEVKCYLNGVKIPGIVRLRTLIVKILGVIFSVAGGLAVGKEG 210 (762)
T ss_pred cccHHHHHHHHHHHhHHHHHHHHHHHHeechhccCCCCchhhhhhcCccCcceeehhhhHHhHhhhhhhhhhhhhccCcC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhccCccccccccccccccCChhhhhhHHHHhhhhhhhhhhcCCccchhhhhhhhchhhhhhhHHHHH
Q 003889 193 PLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVF 272 (788)
Q Consensus 193 P~vhiGa~igs~l~~~~~~~~~l~~~~~~~f~~~~~~r~li~~GaaAGvaaaF~APigGvlFalE~~~~~~~~~~~~~~~ 272 (788)
||||.|||||+.++|++|++++++|||+|+||||+||||+++||+|||+||+|+||+||+||++||.++||++.++||+|
T Consensus 211 PMIHsGa~Vaagl~QG~S~~~r~~~r~fr~FrnDrdrRD~VscGaAAGVaAAF~APvGGvLFaLEE~aS~Wnq~L~WR~f 290 (762)
T KOG0474|consen 211 PMIHSGSVVAAGLGQGGSTSLRKDWRWFRYFRNDRDRRDLVSCGAAAGVAAAFRAPVGGVLFALEEGASWWNQALLWRTF 290 (762)
T ss_pred CeeehhHHHHhcccCCCccchhhhhhhhhhhcccchhhhhhhcchHHhHHHHhCCCccceEEEechhhHHHHhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCccccCCCceEEeeccCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhc
Q 003889 273 FTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLH 352 (788)
Q Consensus 273 ~~~~va~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~~~~l~~~i~lGv~~Gllg~~f~~~~~~~~~~~~~~~~ 352 (788)
|++++++++++.++.+|.+|+|+.|+.+++++|++.+....|+.+|+++++++|++||++|++||++|....++++ .+
T Consensus 291 Fss~i~~f~l~~~i~~~~~G~~g~f~~~GLi~f~vf~~~~~y~~~el~~f~~iGViGGlLGalfN~Ln~~~~~~r~--~~ 368 (762)
T KOG0474|consen 291 FSSAIVAFVLRAFILSCLSGKCGLFGKGGLINFDVFDGPVDYHIHELPPFLLIGVIGGLLGALFNYLNLKKVLRRY--NY 368 (762)
T ss_pred HHhHHHHHhHHHHHHHHhcCchhccCCcceEEecccCCccccccccccceeEeehhhhhHHHHHHHHHHHHHHHHH--hc
Confidence 9999999999999999999999999999999999987777999999999999999999999999955544333333 45
Q ss_pred ccCCcceeeehhHHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCccchhhhhhccCcHHH
Q 003889 353 KKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDA 432 (788)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~~~p~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~ 432 (788)
.|++..|++++++++++|+++.|.+|++++|+|||.+... .+|| +|+||+|+ |||+|+++|||+||+
T Consensus 369 ~k~k~~kvlea~~Vs~~ts~~af~l~~l~~C~P~~~~~~~--~~~p----------~f~Cp~~~-YNdlAtL~fnt~dda 435 (762)
T KOG0474|consen 369 EKGKIGKVLEALLVSLVTSVLAFGLPFLADCQPCPPSITE--GQCP----------TFFCPDGE-YNDLATLFFNTNDDA 435 (762)
T ss_pred cCchHHHHHHHHHHHHHHHHHHhhhHHHhcCCCCCCCccc--ccCc----------cccCCCCc-hhHHHHHHcCCcHHH
Confidence 6778889999999999999999999999999999974421 1555 48999999 999999999999999
Q ss_pred HHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCCcCcccchhHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHhhh
Q 003889 433 IRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAA 512 (788)
Q Consensus 433 i~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaa 512 (788)
++++||.++ ++|++.+|.+|++.+++++++|||+.+|+|+|+|++++||++||++|+++..++ ++|||.||++|||
T Consensus 436 VrnLFh~~~-~ef~~~tL~iFfv~yf~L~~~TfGi~vpsGlFiP~iL~GAa~GRlvg~~l~~~~---~id~G~yAllGAA 511 (762)
T KOG0474|consen 436 VRNLFHSPT-NEFGILTLAIFFVLYFFLACWTFGIAVPSGLFIPVILTGAAYGRLVGMLLGSYT---NIDPGLYALLGAA 511 (762)
T ss_pred HHHHhcCCC-CccchhHHHHHHHHHHHHHHHHhcccccccchhHHHHhhHHHHHHHHHHHHHhh---ccCchHHHHHhHH
Confidence 999999887 999999999999999999999999999999999999999999999999999888 8999999999999
Q ss_pred hhhhhhcchhHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhCccHHHHHHHHcCCCCCCCCchhhhcccchhhhccC
Q 003889 513 SFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAVGDAFSEGLYEEQAHLRGVPLLESRPKYKMRQMTAKEACGA 592 (788)
Q Consensus 513 a~l~g~~r~pis~~vi~~E~Tg~~~~l~pi~~~~~~a~~v~~~~~~~iy~~~l~~kg~p~l~~~~~~~l~~l~v~diM~~ 592 (788)
|++||++|||+|++||++|+| +..+++|+|++.++|+||+|.||+++||.++++||+|++++++++++++++|+|+|++
T Consensus 512 a~LGG~mRMTvSL~VIl~E~T-n~~~~lPiMlvLliaK~VGD~FNegiYd~~i~LkgvP~Le~~pe~~mr~L~a~ev~~~ 590 (762)
T KOG0474|consen 512 AFLGGVMRMTVSLCVILLELT-NNLLLLPIMLVLLIAKTVGDSFNEGIYDIIIQLKGVPFLEWEPEPYMRNLTAGEVMSK 590 (762)
T ss_pred HHhCCeEEEEeeeehHHHHhh-hhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhccCCccccCCCchHhhhhhHhhhccC
Confidence 999999999999999999999 5678888899999999999999999999999999999999999999999999999999
Q ss_pred CceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCC-CcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCcccccc
Q 003889 593 QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNG-ERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSF 671 (788)
Q Consensus 593 ~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~-~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (788)
| +++++..+++..++++|++++||+|||||++..+ .+++.|+|.|+||..+++++. |..+..+...+ +..+++
T Consensus 591 p-vi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~-f~~~~~~~~~~----~~~~~~ 664 (762)
T KOG0474|consen 591 P-VICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRV-FVEESRSTFDL----PVRRKF 664 (762)
T ss_pred C-eEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhh-hhccCccccCc----chhhcC
Confidence 9 9999999999999999999999999999995533 379999999999999999988 65443322221 111111
Q ss_pred ccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhh
Q 003889 672 SEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDL 751 (788)
Q Consensus 672 ~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DL 751 (788)
. ++ +..++.++++|++++++|+++++|++|+||++|++|++++|+.+++.+||+.|+||+.||++.++++|++||+|+
T Consensus 665 ~-~~-d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~ 742 (762)
T KOG0474|consen 665 T-FR-DFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDL 742 (762)
T ss_pred C-HH-HhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhh
Confidence 1 11 112366789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcC
Q 003889 752 LIEDGE 757 (788)
Q Consensus 752 l~~~~~ 757 (788)
.++...
T Consensus 743 ~~~~~l 748 (762)
T KOG0474|consen 743 ARYRIL 748 (762)
T ss_pred hhHHHh
Confidence 987643
No 2
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.4e-85 Score=711.53 Aligned_cols=589 Identities=32% Similarity=0.545 Sum_probs=465.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHH----------Hhhh--hhhhHHHHHH
Q 003889 79 ALLIGIGTGLAAVFINISVENFAGWKFSLT---------------------FSI----------IQKS--YFAGFLVYIL 125 (788)
Q Consensus 79 ~~liGv~~Gl~~~~~~~~i~~~~~~~~~~~---------------------~~~----------~~~~--~~~~~~~~~~ 125 (788)
.++||..+|..+.+.+...+| ++|.++. ..| .+.. +-..|++|+.
T Consensus 58 ~~~IGl~ag~la~~~di~~~w--D~k~G~C~~~~~~n~~~CC~t~~~~~~c~~~~~w~~~~~~~~~w~~~~~~~~l~y~~ 135 (696)
T KOG0475|consen 58 VLLIGLAAGFLAGLADILTSW--DLKEGYCTPNFWLNHEFCCSTFTEDDVCKEWFFWCEHLGLDFSWTGHYIVSYLIYVL 135 (696)
T ss_pred hhHhHhHHHHhhHHHHhhcch--hhccCcccchhhhhhhhheeeeecCccchhhhhhHHHhccccCCCCcchHHHHHHHH
Confidence 478888888888888887776 2221110 000 0001 3458999999
Q ss_pred HHHHHHHHHHHhhhccccccCCCCHHHHHHHHcCcccccchhhHHHHHHHHHHHHHhccCCcccccchHHHHHHHHHHHh
Q 003889 126 INLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLL 205 (788)
Q Consensus 126 ~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~g~~~~~~l~~~~l~~K~~~~~lsv~sG~svG~EGP~vhiGa~igs~l 205 (788)
+++.+++++..+++.++|.|.||||||+|+++.|..+++++..+|++.|.++..++++||+|+|||||+||++.|+|+.+
T Consensus 136 ~al~fa~la~~lv~~~AP~A~gSGIpEIK~ilSGf~~~~~lg~~tl~iKsVal~lsvaSGLSlGKEGP~VHiA~c~g~~~ 215 (696)
T KOG0475|consen 136 WALLFAFLAVSLVKVVAPYACGSGIPEIKTILSGFIIRGFLGKWTLLIKSVALCLSVASGLSLGKEGPSVHIATCIGNIF 215 (696)
T ss_pred HHHHHHHHHHHHhhheehhhhcCCCccceeeeccchhhhhhhHHHHhhhhhhheeeeccccccCCCCCceeeeechhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCcccccccccccccc-CChhhhhhHHHHhhhhhhhhhhcCCccchhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHH
Q 003889 206 GQGGSTKYHLRYRWLQVF-RSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRS 284 (788)
Q Consensus 206 ~~~~~~~~~l~~~~~~~f-~~~~~~r~li~~GaaAGvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~ 284 (788)
++ +++.+ .|...+|+.++|++|||+|++|||||||++|++|++++++..+.+|+.|+|+.+|..+++.
T Consensus 216 s~-----------~f~~~~~~e~~~reilsAaaAaGvavaFgAPIGGVlFslEev~~~fp~ktlw~sff~aLsAv~~L~~ 284 (696)
T KOG0475|consen 216 SK-----------IFPKYRLNEAKKREILSAAAAAGVAVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALSAVTALRS 284 (696)
T ss_pred hh-----------hhhhhccchhHHHHHHHHHhhccchhhcCCccceeeeehhhhhhcCCccchHHHHHHHHHHHHHHee
Confidence 87 44433 3778899999999999999999999999999999999999999999999999999999886
Q ss_pred hhhhccCCCccccCCCceEEeeccCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhcccCCcceeeehh
Q 003889 285 AMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEAC 364 (788)
Q Consensus 285 ~~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~~~~l~~~i~lGv~~Gllg~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (788)
+ ..|+++....|.+. .+.+|++.|+++|+++|++||+.|.+|. +++.++.|++...+...+++++++
T Consensus 285 i---------~pf~~~~~vLf~V~-Y~~~W~~~EL~pFi~LGifgGl~G~~~i---r~n~~~~~~rK~~~lg~~pv~ev~ 351 (696)
T KOG0475|consen 285 I---------NPFGNSRLVLFYVD-YDRPWSLFELLPFILLGIFGGLWGAFFI---RLNIRFCRFRKSSKLGKFPVLEVV 351 (696)
T ss_pred e---------cccCCCceEEEEEe-ccCCcccccchHHHHHHHhhhHHHHHHH---HHHHHHHhccchhhccCCcchhHH
Confidence 4 46777777788876 5789999999999999999999999999 444455444322234567899999
Q ss_pred HHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCccchhhhhhccCcHHHHHHHhcccCCCc
Q 003889 365 VISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHE 444 (788)
Q Consensus 365 ~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~~~p~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~ 444 (788)
.++++|++++|+.|+++--...-. ......|+ ...+- + + -+ +.-.
T Consensus 352 ~vt~iTaiIs~~np~~r~~~~e~i--~~Lf~~C~---------------~~~s~-~---l-~~-------------~~~~ 396 (696)
T KOG0475|consen 352 FVTLVTAIISLFNPETRFNMSELI--TILFNKCS---------------PSSST-S---L-PE-------------TTVY 396 (696)
T ss_pred HHHHHHHHHHhcCHHHHhhHHHHH--HHHHhhcC---------------Ccccc-c---C-cc-------------cchH
Confidence 999999999999999731000000 00011121 11100 0 0 00 0001
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCcCcccchhHHHHHHHHHHHHHHHHHHhhh--------cCCCchHHHHHHhhhhhhh
Q 003889 445 YSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVNFYK--------KLNIEEGTYALLGAASFLG 516 (788)
Q Consensus 445 ~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~~~~--------~~~~~~~~~aliGaaa~l~ 516 (788)
-..+.|++.+++|+++|++|+|+++|+|+|+|||.+||+.||++|.++..+.+ ...+.|+.||++||||.|+
T Consensus 397 ~~~~~L~~a~i~k~~~t~ftfGakvP~GifvPSmaiGA~aGr~vG~~~e~l~~~~~~~~fg~~ci~Pg~Ya~vGaAA~Ls 476 (696)
T KOG0475|consen 397 SAAILLLLALILKIALTIFTFGAKVPAGIFVPSLAIGAIAGRAVGIIVEQLAQNPDFNLFGLSCATPGAYALVGAAATLS 476 (696)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccCccceecchHHHHHHHHHHHHHHHHHHhcCCCccccchhhcCchHHHHHHHHHHhc
Confidence 12456777888999999999999999999999999999999999988766543 2358899999999999999
Q ss_pred hhcchhHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhh-CccHHHHHHHHcCCCCCCCCchhhhcccchhhhccC---
Q 003889 517 GSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAVGDAF-SEGLYEEQAHLRGVPLLESRPKYKMRQMTAKEACGA--- 592 (788)
Q Consensus 517 g~~r~pis~~vi~~E~Tg~~~~l~pi~~~~~~a~~v~~~~-~~~iy~~~l~~kg~p~l~~~~~~~l~~l~v~diM~~--- 592 (788)
|++|+|+|++|||+|+||++.+++|+|+|+++|+||++.+ ..++||+++++||+||++++.+.. +--..++|.+
T Consensus 477 GvtrltvtlVVImFELTG~l~~IlPlm~av~~SkwI~d~~gk~gIyda~I~~ng~P~l~~k~e~~--~t~~~~v~~p~~~ 554 (696)
T KOG0475|consen 477 GVTRLTVTLVVIMFELTGALNYILPLMLAVMISKWIGDGLGKTGIYDAHIELNGYPFLDSKSEFS--STLAIPVMEPCRS 554 (696)
T ss_pred CcceeeEEEEEEeeeccCcceeHHHHHHHHHHHHHHHhccccchHHHHHHHhcCCCCcccccccc--cchhhhhhchhcC
Confidence 9999999999999999999999999999999999999999 789999999999999997765544 3344555543
Q ss_pred -CceEEecC-cccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccc
Q 003889 593 -QKVVSLPR-IIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHS 670 (788)
Q Consensus 593 -~~vv~l~~-~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (788)
++..++.. .++++|...+|+++++++||||-+. ++++++|+|+|+|+...+.+.....+ .. . . .+
T Consensus 555 ~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~--~sq~lvGfv~rr~l~~~i~~ar~~q~-~~-~-------~--~~ 621 (696)
T KOG0475|consen 555 ESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSE--DSQRLVGFVLRRNLFLAILNARKIQS-FI-V-------T--TS 621 (696)
T ss_pred chhheeccccceeHHHHHHHHhhcccCCceEEEcc--ccceeEEEEchHHHHHHHhhhccccc-cc-e-------e--cc
Confidence 12555554 4999999999999999999998653 27899999999999876654220000 00 0 0 00
Q ss_pred cccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhh
Q 003889 671 FSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKD 750 (788)
Q Consensus 671 ~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~D 750 (788)
. .+.++. .....+.....|++++|+.+|++|.+++|.+-+.++|++.|+++..|.++ |++.|+||+||
T Consensus 622 ~-~f~~~~----------~~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~~-G~l~Giitkkd 689 (696)
T KOG0475|consen 622 I-YFNDPS----------PSAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTKN-GILLGIITKKD 689 (696)
T ss_pred c-ccCCCC----------ccccCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEccC-CeeEeeeehHH
Confidence 0 011111 01112233568899999999999999999999999999999999877655 99999999999
Q ss_pred hhhhh
Q 003889 751 LLIED 755 (788)
Q Consensus 751 Ll~~~ 755 (788)
+++..
T Consensus 690 ~l~~~ 694 (696)
T KOG0475|consen 690 CLRHT 694 (696)
T ss_pred HHHhh
Confidence 99864
No 3
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-86 Score=728.68 Aligned_cols=647 Identities=26% Similarity=0.470 Sum_probs=497.0
Q ss_pred HHHHhcCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 003889 58 EEQAQRGKLYVGYSVVVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYI 137 (788)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~w~~~~liGv~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 137 (788)
++|..|..++++++....|++.+++|++++++++.+|.+++.+++...+....+-+.+....|+.|+.+.+.+.++++.+
T Consensus 78 ~~~~~r~~q~i~r~l~eDW~flalLG~imAlvS~~mD~ai~~~~~a~~~ly~~~~~~~~yl~yl~Wv~y~v~Li~fSA~f 157 (931)
T KOG0476|consen 78 QEFLTRQMQNIVRKLGEDWFFLALLGVIMALVSIGMDMAIESLQHAQVWLYRELGSSHSYLAYLSWVGYPVGLVLFSAGF 157 (931)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666777888899999999999999999999999999999877655433333334577888999999999999999
Q ss_pred hhccccccCCCCHHHHHHHHcCcccccchhhHHHHHHHHHHHHHhccCCcccccchHHHHHHHHHHHhhccCcccccccc
Q 003889 138 ITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRY 217 (788)
Q Consensus 138 ~~~~~p~a~GsGipev~~~l~g~~~~~~l~~~~l~~K~~~~~lsv~sG~svG~EGP~vhiGa~igs~l~~~~~~~~~l~~ 217 (788)
+++++|+|.||||||||.+|.|+..+++++.||++.|++|..+++|||+++|||||+|||++++++.+++..+ +
T Consensus 158 ~h~iapQAvGSGIPEmKtIlrGv~LkeYLt~KtlvAKviGLT~tLGsGlpiGKeGPFVHiasivA~~l~k~~a------~ 231 (931)
T KOG0476|consen 158 CHYIAPQAVGSGIPEMKTILRGVILKEYLTLKTLVAKVIGLTLTLGSGLPIGKEGPFVHIASIVAALLSKVTA------C 231 (931)
T ss_pred HheeccccccCCChhHHHHHHhhhHHhhhhHHHHHHHHHHhhhhhccCCCcCCCCCchhHHHHHHHHHHHHHH------h
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987421 1
Q ss_pred ccccccCChhhhhhHHHHhhhhhhhhhhcCCccchhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhccCCCcccc
Q 003889 218 RWLQVFRSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHF 297 (788)
Q Consensus 218 ~~~~~f~~~~~~r~li~~GaaAGvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~f 297 (788)
..-..|+|+....+++++|||.|+|+.|.||+|||||++|++++||..++|||.||++.++++++|.+..|.......
T Consensus 232 ~~~g~~enesR~~EmLaaaCAVGVactFsAPiGgVLfSIEvTS~yFAVrnYWRGFFAAtcsA~vFR~lavf~v~~~~t-- 309 (931)
T KOG0476|consen 232 QFGGFFENESRNMEMLAAACAVGVACTFSAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCSAFVFRLLAVFFVEAEVT-- 309 (931)
T ss_pred hccccccCcchHHHHHHHHhhhhheeeecCccceeEEEEEEeeeeeeHHHHHHHHHHHHhHHHHHHHHHHHcccchhh--
Confidence 234567788889999999999999999999999999999999999999999999999999999999987775422111
Q ss_pred CCCceEEeeccC-CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHH---HHh--hhcccCCcceeeehhHHHHHHH
Q 003889 298 GSGGFIIWDISD-GQEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSW---RRN--YLHKKGNRVKIIEACVISVITS 371 (788)
Q Consensus 298 ~~~~~~~f~~~~-~~~~~~~~~l~~~i~lGv~~Gllg~~f~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~ 371 (788)
-...|+.++ .+.+|++.|+|+|+++|++||++|++|+ ++.+++ .|. +.++-...+|++.+.+++++.+
T Consensus 310 ---ItA~yqT~F~~d~~F~~~ELp~FallGl~cGllGa~fV---ylhR~ivlf~Rkn~~~~~~f~k~~llyp~~~a~v~s 383 (931)
T KOG0476|consen 310 ---ITALYQTSFRPDFPFDVQELPFFALLGLLCGLLGALFV---YLHRRIVLFLRKNRYAKKLFQKSRLLYPAFIALVFS 383 (931)
T ss_pred ---hHHHHhccCCCCCCCCHHHhHHHHHHHHHHhcccceee---eeeeeeeeeehhhHHHHHHHhhCccHHHHHHHHHHh
Confidence 011233332 3448999999999999999999999999 555443 111 1111123457889999999988
Q ss_pred HHHhcccccccCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCcc---chhhhhhccC------------cHHHHHHH
Q 003889 372 VISFGLPLLRKCSPCPESDLDSGIECPRPPGMYGNYVNFYCSKDKEY---NDLATIFFNT------------QDDAIRNL 436 (788)
Q Consensus 372 ~~~~~~p~~~~c~~~~~~~~~~~~~~p~~~g~~g~~~~~~c~~g~~y---~~la~l~~~~------------~~~~i~~l 436 (788)
.+.|.. -+ | .|. .|+ + ..+.+++.|- +.+...+.
T Consensus 384 sltfP~-Gl---------------------G---~f~-----aG~-l~f~etl~~fF~Nctw~~~~~~~~~~~~~~~~hW 432 (931)
T KOG0476|consen 384 SLTFPP-GL---------------------G---QFL-----AGR-LSFRETLVDFFDNCTWWVQTNDSELCPAHILTHW 432 (931)
T ss_pred heecCC-cc---------------------c---ccc-----ccc-ccHHhHHHHHhhcCeeeecCCCcCCCChhhhhhh
Confidence 877631 11 1 000 111 0 0111111000 00001111
Q ss_pred hcccCCCchhHHHHHHHHHHHHHHHHHHhcCCcCcccchhHHHHHHHHHHHHHHHHHHhhh--------cCCCchHHHHH
Q 003889 437 FSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVNFYK--------KLNIEEGTYAL 508 (788)
Q Consensus 437 ~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~~~~--------~~~~~~~~~al 508 (788)
.+. ......+.+|++|+++||++++++..+.+|+|.|+|.+++||++||++|+.+..++| .+.+.||.||+
T Consensus 433 ~~p-~g~~~~f~tL~lf~l~~F~~siia~TipvPsG~FmPvFViGAafGRlvGE~m~~lfP~Gi~~~gi~~~I~PG~YAV 511 (931)
T KOG0476|consen 433 YHP-EGDVSIFGTLVLFFLMYFWMSIIATTIPVPSGVFMPVFVIGAAFGRLVGEIMAVLFPEGIRGGGITPPIHPGGYAV 511 (931)
T ss_pred cCC-CCceeeHHHHHHHHHHHHHHHHHHhccccCccceeeeeeechhhhhhhhhhheeecccccccCCccCccccchhhh
Confidence 110 002233567999999999999999999999999999999999999999998877653 24689999999
Q ss_pred HhhhhhhhhhcchhHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhCccHHHHHHHHcCCCCCCCCchhh--hcccch
Q 003889 509 LGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAVGDAFSEGLYEEQAHLRGVPLLESRPKYK--MRQMTA 586 (788)
Q Consensus 509 iGaaa~l~g~~r~pis~~vi~~E~Tg~~~~l~pi~~~~~~a~~v~~~~~~~iy~~~l~~kg~p~l~~~~~~~--l~~l~v 586 (788)
+|||||-|++ .+|+|.+||++|+||++..++|+|+|+++|++|+.++++|+||..++.|++|||++.++.. .+.+.|
T Consensus 512 VGAAAfsGaV-THTvSvAVIifElTGQl~hiLPVmIAVllaNAVa~~LQPSiYDSII~IKklPYLPDlpps~~~~h~v~V 590 (931)
T KOG0476|consen 512 VGAAAFSGAV-THTVSVAVIIFELTGQLCHILPVMIAVLLANAVAASLQPSIYDSIIRIKKLPYLPDLPPSRSSVHTVKV 590 (931)
T ss_pred hhhhhhccce-eeeeeEEEEEEeeccchHHHHHHHHHHHHHHHHHHHhCcchhhheeeeccCCcCCCCCCcccceeEEEe
Confidence 9999976555 5699999999999999999999999999999999999999999999999999999887654 468899
Q ss_pred hhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCC----------
Q 003889 587 KEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPL---------- 656 (788)
Q Consensus 587 ~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~---------- 656 (788)
+|+|.+| +..+..+.|.+|+.++++.+..+.||+||+++ +..++|.|.|++|..+++++. .++++
T Consensus 591 E~iMV~d-v~yI~k~~Ty~elre~l~~~~lR~~PlV~s~e--smiLlGSV~R~~L~~ll~~~i--g~~~r~~~a~~r~r~ 665 (931)
T KOG0476|consen 591 EHIMVTD-VKYITKDTTYRELREALQTTTLRSFPLVESKE--SMILLGSVARRYLTALLQRHI--GPEPRLVEAQKRVRT 665 (931)
T ss_pred eeecccc-ceeeeccCcHHHHHHHHHhCccceeccccCcc--cceeeehhHHHHHHHHHHhhc--CccHhHHHHHHHhhh
Confidence 9999999 99999999999999999998899999999854 789999999999999887632 11111
Q ss_pred --------------------CCCCCCC----CCc-----------------------ccccccc-------------ccc
Q 003889 657 --------------------PCDTRGG----SKP-----------------------ISHSFSE-------------FVK 676 (788)
Q Consensus 657 --------------------~~~~~~~----~~~-----------------------~~~~~~~-------------~~~ 676 (788)
+++.... .++ ..+.+.+ ..+
T Consensus 666 ~~E~~~~~~~~~~~ee~~~r~p~~~~~~~~~~e~s~~~~~~~et~kp~~p~~~~~p~~~~~lt~~~~sG~~~~~~~s~~~ 745 (931)
T KOG0476|consen 666 ASEIFLTIFERSKKEEPPRRSPSRSEFFTMQRENSDIVTALGETAKPLPPSEQRLPSVVENLTPRTISGTRENALLSLRD 745 (931)
T ss_pred hhhchhhhhhhhhccCCCCCCccccccccccccccccccccccccCCCCchhccCccccccccccccCCccccccccccc
Confidence 0000000 000 0000000 000
Q ss_pred cCCC-CC---------------C-------C--ccccccCccc--------cccccCcccc-cCCCCceecCCCCHHHHH
Q 003889 677 PASS-KG---------------L-------S--IDDIHLSSDD--------MEMYIDLGPF-LNPSPYVVPEDMSLSKVY 722 (788)
Q Consensus 677 ~~~~-~~---------------~-------~--i~di~~~~~~--------~~~~idl~~~-m~~~p~tV~~~~sl~~a~ 722 (788)
..++ +. . + -.+.+...+| ++..+|+.+. +|+.|+...+.+||.+++
T Consensus 746 ~~~~~~~p~~~~~~l~~~~~r~~~~~~~~~~~~~~~~d~~~eei~~we~~~l~~~ld~~~~~IDpaPfQLve~TSL~K~H 825 (931)
T KOG0476|consen 746 MESPLHGPAAEHHPLHKLLTRQTKVNNKKQSHDDNEYDLSAEEIKEWEEEQLSQKLDLDECAIDPAPFQLVEGTSLYKVH 825 (931)
T ss_pred cccCCCCCcccccccccccccccccccccccccccccccChhhhhHHHHHHhccccchhhCCCCCCceeeeccchHHHHH
Confidence 0000 00 0 0 0001112221 2334566554 688999999999999999
Q ss_pred HHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhcC
Q 003889 723 NLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (788)
Q Consensus 723 ~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~ 757 (788)
.+|.-+|++|..|++. ||++|+|+.+||.+++..
T Consensus 826 tLFSLLgL~~AYVT~~-GrLvGVValkELRkAie~ 859 (931)
T KOG0476|consen 826 TLFSLLGLNHAYVTSC-GRLVGVVALKELRKAIEN 859 (931)
T ss_pred HHHHHhccchhhhccc-CcEEEEEEHHHHHHHHHh
Confidence 9999999999999998 999999999999998776
No 4
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=100.00 E-value=3e-77 Score=675.80 Aligned_cols=461 Identities=56% Similarity=0.959 Sum_probs=395.3
Q ss_pred CCcccccccchHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhHHH
Q 003889 44 ESLDYEVIENYAYREEQAQRGKLYVGYSVVVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKS-YFAGFLV 122 (788)
Q Consensus 44 esldy~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~liGv~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~ 122 (788)
||+||++.||+++|.|||+|++++...+...||++++++|+++|+++.+++..+++++++++....++..+. .+..|..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~ilvGi~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (466)
T cd03685 1 ESLDYEVIENDLFREEWRKRKKKQVLQYEFLKWIICLLIGIFTGLVAYFIDLAVENLAGLKFLVVKNYIEKGRLFTAFLV 80 (466)
T ss_pred CCCCccccccHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHH
Confidence 899999999999999999999988889999999999999999999999999999999999887654444333 4455677
Q ss_pred HHHHHHHHHHHHHHhhhccccccCCCCHHHHHHHHcCcccccchhhHHHHHHHHHHHHHhccCCcccccchHHHHHHHHH
Q 003889 123 YILINLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIA 202 (788)
Q Consensus 123 ~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~g~~~~~~l~~~~l~~K~~~~~lsv~sG~svG~EGP~vhiGa~ig 202 (788)
|+.+++++++++++++.+++|.++||||||+|+++||.+.++.+++|+++.|++++++++++|+|+|||||++|+||++|
T Consensus 81 ~~~~~~~~~li~~~l~~~~~p~a~GsGip~v~~~l~g~~~~~~l~~r~~~~K~i~~~l~vgsG~s~GrEGP~v~iGa~ig 160 (466)
T cd03685 81 YLGLNLVLVLVAALLVAYIAPTAAGSGIPEVKGYLNGVKIPHILRLKTLLVKIVGVILSVSGGLALGKEGPMIHIGACIA 160 (466)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHcCcCccccchHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHH
Confidence 77888899999999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred HHhhccCccccccccccccccCChhhhhhHHHHhhhhhhhhhhcCCccchhhhhhhhchhhhhhhHHHHHHHHHHHHHHH
Q 003889 203 SLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVV 282 (788)
Q Consensus 203 s~l~~~~~~~~~l~~~~~~~f~~~~~~r~li~~GaaAGvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~ 282 (788)
++++|..++.+++++|++++++++++||++++||+|||+||+||||++|++|++||+.++|+.+..|+.++++++|++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~li~~GaAAGlaaaF~APl~G~lFa~E~l~~~~~~~~~~~~l~~s~ias~va 240 (466)
T cd03685 161 AGLSQGGSTSLRLDFRWFRYFRNDRDKRDFVTCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQALTWRTFFSSMIVTFTL 240 (466)
T ss_pred HHHhhccccccccchhhhhhccCHHHHHHHHHHHhhcchhhccCCCcceeeeeeehhhhhcchhHHHHHHHHHHHHHHHH
Confidence 99998666666777778888889999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhhhhccCCCccccCCCceEEeeccCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhcccCCcceeee
Q 003889 283 RSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIE 362 (788)
Q Consensus 283 ~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~~~~l~~~i~lGv~~Gllg~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (788)
+.+......+....|+.+..+.|+.......++..|+++++++|++||++|.+|+++++..+++++++ +.+.+++|+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~-~~~~~~~~~l~ 319 (466)
T cd03685 241 NFFLSGCNSGKCGLFGPGGLIMFDGSSTKYLYTYFELIPFMLIGVIGGLLGALFNHLNHKVTRFRKRI-NHKGKLLKVLE 319 (466)
T ss_pred HHHHHHcCCCCccccCCccceecccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHH
Confidence 87755433322234554444455544334568899999999999999999999995444443333321 11133446666
Q ss_pred hhHHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCccchhhhhhccCcHHHHHHHhcccCC
Q 003889 363 ACVISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTI 442 (788)
Q Consensus 363 ~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~~~p~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~ 442 (788)
+++++++++++.+
T Consensus 320 ~~lv~~~~~~~~~------------------------------------------------------------------- 332 (466)
T cd03685 320 ALLVSLVTSVVAF------------------------------------------------------------------- 332 (466)
T ss_pred HHHHHHHHHHHHH-------------------------------------------------------------------
Confidence 6665555544221
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhcCCcCcccchhHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHhhhhhhhhhcchh
Q 003889 443 HEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMT 522 (788)
Q Consensus 443 ~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~p 522 (788)
...+++++++|+++|++|+|+|+|||+|+|++++||++|+++|.+++.+.+..+.+|+.||++||||+++|++|+|
T Consensus 333 ----~~~l~~~~~~k~l~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~~~~~~~~~~~aliGmaa~lag~~raP 408 (466)
T cd03685 333 ----PQTLLIFFVLYYFLACWTFGIAVPSGLFIPMILIGAAYGRLVGILLGSYFGFTSIDPGLYALLGAAAFLGGVMRMT 408 (466)
T ss_pred ----HHHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHHccccCCCchHHHHHHHHHHHhHHhhhh
Confidence 1234556678999999999999999999999999999999999999887666678999999999999999999999
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhCccHHHHHHHHcCCCCCCCC
Q 003889 523 VSLCVIMVEITNNLKFLPLIMLVLLISKAVGDAFSEGLYEEQAHLRGVPLLESR 576 (788)
Q Consensus 523 is~~vi~~E~Tg~~~~l~pi~~~~~~a~~v~~~~~~~iy~~~l~~kg~p~l~~~ 576 (788)
+|+++|++|+||++++++|+|+++++|+++++.+++++||.+++.||+||+++.
T Consensus 409 lt~iviv~ElTg~~~~l~pl~ia~~iA~~va~~~~~siY~~~l~~~g~p~l~~~ 462 (466)
T cd03685 409 VSLTVILLELTNNLTYLPPIMLVLMIAKWVGDYFNEGIYDIIIQLKGVPFLHNG 462 (466)
T ss_pred HHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCC
Confidence 999999999999999999999999999999999999999999999999999874
No 5
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=4.3e-75 Score=679.44 Aligned_cols=543 Identities=19% Similarity=0.286 Sum_probs=439.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccCCCCH-HHHHH
Q 003889 77 FFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGI-PEIKG 155 (788)
Q Consensus 77 ~~~~liGv~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGi-pev~~ 155 (788)
++++++|+++|+++.+|+..++++++++|....++.......+|++...++++++++++++..+..+.++++|+ +.+++
T Consensus 26 ~~~~~vG~~~Gl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ggli~~~~~~~~~~~~~~~g~~~~~~~ 105 (574)
T PRK01862 26 IWSAIVGIGGAFATTAFREGIELIQHLISGHSGSFVEMAKSLPWYVRVWLPAAGGFLAGCVLLLANRGARKGGKTDYMEA 105 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhccccccCCcHHHHHH
Confidence 37899999999999999999999999988632211111111233434455666667777776666666664444 45666
Q ss_pred HHcCcccccchhhHHHHHHHHHHHHHhccCCcccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhHHHH
Q 003889 156 YLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTC 235 (788)
Q Consensus 156 ~l~g~~~~~~l~~~~l~~K~~~~~lsv~sG~svG~EGP~vhiGa~igs~l~~~~~~~~~l~~~~~~~f~~~~~~r~li~~ 235 (788)
+.++ .+.+++++.+.|++++++++++|+|+|||||++|+||++|+++++ |++. +++++|.+++|
T Consensus 106 ~~~~---~~~~~~~~~~~k~~~~~l~i~~G~s~G~EgP~v~~ga~~~~~~~~-----------~~~~--~~~~~r~l~~~ 169 (574)
T PRK01862 106 VALG---DGVVPVRQSLWRSASSLLTIGSGGSIGREGPMVQLAALAASLVGR-----------FAHF--DPPRLRLLVAC 169 (574)
T ss_pred HHcC---CCCCChHHHHHHHHHHHHHHHcCCCcCCcchHHHHHHHHHHHHHH-----------HhCC--CHHHHHHHHHH
Confidence 6654 355778999999999999999999999999999999999999997 4443 56788999999
Q ss_pred hhhhhhhhhhcCCccchhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhccCCCccccCCCceEEeeccCCCCCCc
Q 003889 236 GCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYS 315 (788)
Q Consensus 236 GaaAGvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~ 315 (788)
|+|||+||+||||++|++|++|++...|+.+.++++++++++++++.+.+ ++.++ .|+++ ....++
T Consensus 170 G~aAglaa~F~aPl~g~lFa~E~~~~~~~~~~~~~~~~as~~a~~v~~~~-----------~g~~~--~~~~~-~~~~~~ 235 (574)
T PRK01862 170 GAAAGITSAYNAPIAGAFFVAEIVLGSIAMESFGPLVVASVVANIVMREF-----------AGYQP--PYEMP-VFPAVT 235 (574)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH-----------cCCCc--eeeCC-CcCcCC
Confidence 99999999999999999999999988899999999999999998888754 23333 45555 245678
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhcccCCcceeeehhHHHHHHHHHHhcccccccCCCCCCCCCCCCC
Q 003889 316 FEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLDSGI 395 (788)
Q Consensus 316 ~~~l~~~i~lGv~~Gllg~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~ 395 (788)
..++++++++|++||++|.+|+ +.+.+..+++.+.+ ..+++...+.+++++++.++.|..
T Consensus 236 ~~~~~~~~~lGv~~G~~~~~f~---~~~~~~~~~~~~~~--~~~~~~~~~~gl~~g~l~~~~p~~--------------- 295 (574)
T PRK01862 236 GWEVLLFVALGVLCGAAAPQFL---RLLDASKNQFKRLP--VPLPVRLALGGLLVGVISVWVPEV--------------- 295 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhccC--CchhHHHHHHHHHHHHHHHHHHHH---------------
Confidence 8999999999999999999999 55555555442222 223345567778888888887765
Q ss_pred CCCCCCCCCCccccccccCCCccchhhhhhccCcHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCCcCcccch
Q 003889 396 ECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFV 475 (788)
Q Consensus 396 ~~p~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~ 475 (788)
.| .+|+ .++.++++ ...+..++.+++.|+++|++|+|+|+|||+|+
T Consensus 296 -----~g-------------~G~~------------~i~~~~~~----~~~~~~l~~~~~~K~~~t~~t~g~G~~GG~f~ 341 (574)
T PRK01862 296 -----WG-------------NGYS------------VVNTILHA----PWTWQALVAVLVAKLIATAATAGSGAVGGVFT 341 (574)
T ss_pred -----hc-------------CCHH------------HHHHHHcC----CchHHHHHHHHHHHHHHHHHHHccCCCccchh
Confidence 12 2233 24444432 34456677788899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHhhhhhhhhhcchhHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhh
Q 003889 476 PGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAVGDA 555 (788)
Q Consensus 476 P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg~~~~l~pi~~~~~~a~~v~~~ 555 (788)
|++++||++|+++|.+++.+.+....+|+.|+++||||+++|++|+|++++++++|+|+++++++|+|+++++|+++++.
T Consensus 342 P~l~iGa~~G~~~g~~~~~~~~~~~~~~~~~a~vGmaa~~aa~~~aPlt~i~l~~Elt~~~~~~~P~~ia~~~a~~v~~~ 421 (574)
T PRK01862 342 PTLFVGAVVGSLFGLAMHALWPGHTSAPFAYAMVGMGAFLAGATQAPLMAILMIFEMTLSYQVVLPLMVSCVVAYFTARA 421 (574)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887655556788899999999999999999999999999999999999999999999999998
Q ss_pred h-CccHHHHHHHHcCCCCCCCCchhhhcccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEE
Q 003889 556 F-SEGLYEEQAHLRGVPLLESRPKYKMRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIG 634 (788)
Q Consensus 556 ~-~~~iy~~~l~~kg~p~l~~~~~~~l~~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvG 634 (788)
+ ++++||.++++++. +.+.+.+++++++|+|+++ ..+++++++++|+.+.+++++++.+||+|+ +++++|
T Consensus 422 ~~~~~iy~~~~~~~~~----~~~~~~L~~~~V~dim~~~-~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~----~g~lvG 492 (574)
T PRK01862 422 LGTTSMYEITLRRHQD----EAERERLRTTQMRELIQPA-QTVVPPTASVADMTRVFLEYPVKYLYVVDD----DGRFRG 492 (574)
T ss_pred hCCCChHHHHHHhccc----cchhhHHhhCcHHHHhcCC-CceeCCCCCHHHHHHHHHhCCCceEEEEcC----CCeEEE
Confidence 8 78999999998764 3356678899999999998 899999999999999999999999999998 789999
Q ss_pred EEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecC
Q 003889 635 LVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPE 714 (788)
Q Consensus 635 iI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~ 714 (788)
+|+++|+.+.+.++. . . ...+++++|++++.++++
T Consensus 493 iVt~~dL~~~l~~~~-----~------------------------~----------------~~~~v~dim~~~~~~v~~ 527 (574)
T PRK01862 493 AVALKDITSDLLDKR-----D------------------------T----------------TDKTAADYAHTPFPLLTP 527 (574)
T ss_pred EEEHHHHHHHhhccc-----c------------------------c----------------ccchHHHhccCCCeeECC
Confidence 999999977543221 0 0 011244558899999999
Q ss_pred CCCHHHHHHHHHHcCCCEEEEecCC--CeEEEEEeHhhhhhhhcC
Q 003889 715 DMSLSKVYNLFRQLGLRHIFVVPRA--SRVIGLITRKDLLIEDGE 757 (788)
Q Consensus 715 ~~sl~~a~~lf~~~glr~lpVVd~~--g~lvGIITr~DLl~~~~~ 757 (788)
|++++++.++|.+++.+++||+|++ ++++|+||++|+++++.+
T Consensus 528 d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 528 DMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred CCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence 9999999999999999999999986 589999999999998754
No 6
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=100.00 E-value=5.3e-68 Score=597.77 Aligned_cols=412 Identities=39% Similarity=0.699 Sum_probs=344.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccCCCCHHHHHHHHcCccc
Q 003889 83 GIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGVDI 162 (788)
Q Consensus 83 Gv~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~g~~~ 162 (788)
|+++|+++..++..++++.+++.... +|+.|+++++++++++++++++++|.++||||||+|+++||.+.
T Consensus 1 g~~~g~~~~~i~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~i~~~l~~~~~p~a~GsGIp~v~~~l~g~~~ 70 (445)
T cd03684 1 GIAIGLIAGLIDIIASWLSDLKEGYC----------NYIIYVLLALLFAFIAVLLVKVVAPYAAGSGIPEIKTILSGFII 70 (445)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHHHHHHHHHHHhcCccccCCCHHHHHHHHcCccc
Confidence 78999999999999999988775432 45667788888999999999999999999999999999999888
Q ss_pred ccchhhHHHHHHHHHHHHHhccCCcccccchHHHHHHHHHHHhhccCcccccccccccccc-CChhhhhhHHHHhhhhhh
Q 003889 163 HGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVF-RSDRDRRDLVTCGCAAGV 241 (788)
Q Consensus 163 ~~~l~~~~l~~K~~~~~lsv~sG~svG~EGP~vhiGa~igs~l~~~~~~~~~l~~~~~~~f-~~~~~~r~li~~GaaAGv 241 (788)
++.+++|+++.|++++++++++|+|+|||||++|+||++|++++| |++.+ .++++||++++||+|||+
T Consensus 71 ~~~~~~~~~~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ia~~l~~-----------~~~~~~~~~~~~r~li~~GaaAGl 139 (445)
T cd03684 71 RGFLGKWTLLIKSVGLVLAVASGLSLGKEGPLVHIATCVGNIISR-----------LFPKYRRNEAKRREILSAAAAAGV 139 (445)
T ss_pred cccccHHHHHHHHHhhHHhhccCCcCCCCCCcchHHHHHHHHHHH-----------HHHHhccCHHHHHHHHHHHHhhhh
Confidence 899999999999999999999999999999999999999999986 44433 378999999999999999
Q ss_pred hhhhcCCccchhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhccCCCccccCCCceEEeeccCCCCCCchhhHHH
Q 003889 242 AAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLP 321 (788)
Q Consensus 242 aaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~~~~l~~ 321 (788)
||+||||+||++|++||+.++|+.+.+|++++++++|+++.+.+.. ++.++.+.|+++ ...+++..|+++
T Consensus 140 aAaF~APi~G~lFalE~l~~~~~~~~l~~~~~as~~a~~v~~~~~~---------~~~~~~~~f~~~-~~~~~~~~~l~~ 209 (445)
T cd03684 140 AVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALVAAFTLKSLNP---------FGTGRLVLFEVE-YDRDWHYFELIP 209 (445)
T ss_pred HHhcCCccchhhhhhHhhhhhccHHHHHHHHHHHHHHHHHHHHhcc---------cCCCCceEEecc-CCCCccHHHHHH
Confidence 9999999999999999999999999999999999999998886532 334444556654 245678899999
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhhcccCCcceeeehhHHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCC
Q 003889 322 MAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPP 401 (788)
Q Consensus 322 ~i~lGv~~Gllg~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~~~p~~~ 401 (788)
++++|++||++|.+|+ +.+.++.+++.+.+.+.++++++++++++++++.++.|+...
T Consensus 210 ~i~lGi~~Gl~g~lf~---~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~l~~~~p~~~~------------------- 267 (445)
T cd03684 210 FILLGIFGGLYGAFFI---KANIKWARFRKKSLLKRYPVLEVLLVALITALISFPNPYTRL------------------- 267 (445)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHcc-------------------
Confidence 9999999999999999 555444444322221234677888999999999998887620
Q ss_pred CCCCccccccccCCCccchhhhhhccCcHHHHHHHhcc----------------cCCC-chhHHHHHHHHHHHHHHHHHH
Q 003889 402 GMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSA----------------KTIH-EYSAQSLLTFLVMFYTLAVVT 464 (788)
Q Consensus 402 g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~----------------~~~~-~~~~~~l~~~~~~k~~~t~~t 464 (788)
+|+ + .++.+|.. ..+. ......+++++++|+++|++|
T Consensus 268 ------------~g~--~------------~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~K~~~t~lt 321 (445)
T cd03684 268 ------------DMT--E------------LLELLFNECEPGDDNSLCCYRDPPAGDGVYKALWSLLLALIIKLLLTIFT 321 (445)
T ss_pred ------------chh--h------------HHHHHHhcCCCcccccccccccccCCccchhHHHHHHHHHHHHHHHHHHH
Confidence 010 0 01111110 0001 123456777889999999999
Q ss_pred hcCCcCcccchhHHHHHHHHHHHHHHHHHHhh---hc-----------CCCchHHHHHHhhhhhhhhhcchhHHHHHHHH
Q 003889 465 FGIAVPAGQFVPGIMIGSTYGRLVGMFVVNFY---KK-----------LNIEEGTYALLGAASFLGGSMRMTVSLCVIMV 530 (788)
Q Consensus 465 ~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~~~---~~-----------~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~ 530 (788)
+|+|+|||+|+|++++||++|+++|.+++.+. |+ ...+|+.||++||||+++|++|+|+|+++|++
T Consensus 322 ~gsG~~GG~f~P~l~iGA~~G~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~alvGmaa~~a~~~raPlt~ivlv~ 401 (445)
T cd03684 322 FGIKVPAGIFVPSMAVGALFGRIVGILVEQLAYSYPDSIFFACCTAGPSCITPGLYAMVGAAAFLGGVTRMTVSLVVIMF 401 (445)
T ss_pred HcCCCCcceeHHHHHHHHHHhHHHHHHHHHHHhhCCcccccccccCCCCccCchHHHHHHHHHHhcchhccchhhhheee
Confidence 99999999999999999999999999998653 22 24789999999999999999999999999999
Q ss_pred HHhCCCchHHHHHHHHHHHHHHHhhh-CccHHHHHHHHcCCCCC
Q 003889 531 EITNNLKFLPLIMLVLLISKAVGDAF-SEGLYEEQAHLRGVPLL 573 (788)
Q Consensus 531 E~Tg~~~~l~pi~~~~~~a~~v~~~~-~~~iy~~~l~~kg~p~l 573 (788)
|+||++++++|+|+++++|+++++.+ ++++||.+++.||+||+
T Consensus 402 ElTg~~~~l~pl~ia~~iA~~vs~~~~~~siY~~~l~~~g~p~l 445 (445)
T cd03684 402 ELTGALNYILPLMIAVMVSKWVADAIGKEGIYDAHIHLNGYPFL 445 (445)
T ss_pred eccCCcccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCC
Confidence 99999999999999999999999999 58999999999999986
No 7
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=100.00 E-value=2.5e-66 Score=581.66 Aligned_cols=415 Identities=31% Similarity=0.565 Sum_probs=341.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccCCCCHHHHHH
Q 003889 76 WFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKG 155 (788)
Q Consensus 76 w~~~~liGv~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~ 155 (788)
|++.+++|+++|+++.+++..++++++++..... ..+++.+..|+.|+.+++++++++++++++++|.++||||||+++
T Consensus 2 w~~~~l~gv~~Gl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~ 80 (426)
T cd03683 2 WLFLALLGILMALISIAMDFAVEKLLNARRWLYS-LLTGNSLLQYLVWVAYPVALVLFSALFCKYISPQAVGSGIPEMKT 80 (426)
T ss_pred eEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHH
Confidence 8889999999999999999999999988865532 223345566778888888889999999999999999999999999
Q ss_pred HHcCcccccchhhHHHHHHHHHHHHHhccCCcccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhHHHH
Q 003889 156 YLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTC 235 (788)
Q Consensus 156 ~l~g~~~~~~l~~~~l~~K~~~~~lsv~sG~svG~EGP~vhiGa~igs~l~~~~~~~~~l~~~~~~~f~~~~~~r~li~~ 235 (788)
+++|.+.++.+++|+++.|++++++++++|+|+|||||++|+||++|+.++|.. +.+ . ..++++++||++++|
T Consensus 81 ~l~g~~~~~~l~~r~~~~k~i~~~l~i~sG~svGrEGP~v~iGa~i~~~~~~~~----~~~--~-~~~~~~~~rr~Li~~ 153 (426)
T cd03683 81 ILRGVVLPEYLTFKTLVAKVIGLTCALGSGLPLGKEGPFVHISSIVAALLSKLT----TFF--S-GIYENESRRMEMLAA 153 (426)
T ss_pred HHcCCCccccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhc----ccc--c-ccccCHHHHHHHHHh
Confidence 999988899999999999999999999999999999999999999999999731 110 0 013477889999999
Q ss_pred hhhhhhhhhhcCCccchhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhccCCCccccCCCceEEeecc-CCCCCC
Q 003889 236 GCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDIS-DGQEDY 314 (788)
Q Consensus 236 GaaAGvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~-~~~~~~ 314 (788)
|+|||+||+||||++|++|++|++.++|+.+.+|++++++++++++.+.+.++..... ..+ + .|... ....++
T Consensus 154 GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~i~s~~a~~v~~~~~~~~~~~~-~~~--~---~~~~~~~~~~~~ 227 (426)
T cd03683 154 ACAVGVACTFGAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCGAFTFRLLAVFFSDQE-TIT--A---LFKTTFFVDFPF 227 (426)
T ss_pred HhhhhhHHhcCCcceeeEEEeehhhhhccHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-ccc--c---cccccccCCCCC
Confidence 9999999999999999999999999999999999999999999998876644321110 000 0 01111 123467
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhc--ccCCcceeeehhHHHHHHHHHHhcccccccCCCCCCCCCC
Q 003889 315 SFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLH--KKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLD 392 (788)
Q Consensus 315 ~~~~l~~~i~lGv~~Gllg~~f~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~ 392 (788)
+..++++++++|+++|++|++|+++++...++++++.. +..+..+++++++++++++++.+ |
T Consensus 228 ~~~~l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~--p-------------- 291 (426)
T cd03683 228 DVQELPIFALLGIICGLLGALFVFLHRKIVRFRRKNRLFSKFLKRSPLLYPAIVALLTAVLTF--P-------------- 291 (426)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHH--H--------------
Confidence 88999999999999999999999555544444433211 11223456677777766655321 1
Q ss_pred CCCCCCCCCCCCCccccccccCCCccchhhhhhccCcHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCCcCcc
Q 003889 393 SGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAG 472 (788)
Q Consensus 393 ~~~~~p~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG 472 (788)
+..++++++.|+++|++|+|+|+|||
T Consensus 292 ------------------------------------------------------~~~l~~~~~~K~~~t~~t~gsG~~GG 317 (426)
T cd03683 292 ------------------------------------------------------FLTLFLFIVVKFVLTALAITLPVPAG 317 (426)
T ss_pred ------------------------------------------------------HHHHHHHHHHHHHHHHHHHhCCCChh
Confidence 23456678899999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhh-------cCCCchHHHHHHhhhhhhhhhcchhHHHHHHHHHHhCCCchHHHHHHH
Q 003889 473 QFVPGIMIGSTYGRLVGMFVVNFYK-------KLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLV 545 (788)
Q Consensus 473 ~f~P~l~iGa~~G~l~g~~~~~~~~-------~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg~~~~l~pi~~~ 545 (788)
+|+|++++||++|+++|.+++.+.| ....+|+.||++||||+++|++|+|.+ ++|++|+||++++++|+|++
T Consensus 318 if~Psl~iGa~~G~~~g~~~~~~~p~~~~~~~~~~~~~~~~alvGmaa~~a~~~ra~~t-~vlv~E~Tg~~~~llpl~ia 396 (426)
T cd03683 318 IFMPVFVIGAALGRLVGEIMAVLFPEGIRGGISNPIGPGGYAVVGAAAFSGAVTHTVSV-AVIIFELTGQISHLLPVLIA 396 (426)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCCcCchHHHHHHHHHHHHHHHhHHHH-HheeeeecCCcchHHHHHHH
Confidence 9999999999999999999988775 345789999999999999999998665 57999999999999999999
Q ss_pred HHHHHHHHhhhCccHHHHHHHHcCCCCCCC
Q 003889 546 LLISKAVGDAFSEGLYEEQAHLRGVPLLES 575 (788)
Q Consensus 546 ~~~a~~v~~~~~~~iy~~~l~~kg~p~l~~ 575 (788)
+++|+++++.+++++||.+++.||+||+++
T Consensus 397 ~~ia~~v~~~~~~~iY~~~l~~~~~p~l~~ 426 (426)
T cd03683 397 VLISNAVAQFLQPSIYDSIIKIKKLPYLPD 426 (426)
T ss_pred HHHHHHHHHhhCCCHHHHHHHhCCCCCCCC
Confidence 999999999998899999999999999974
No 8
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=100.00 E-value=2.3e-65 Score=572.83 Aligned_cols=407 Identities=43% Similarity=0.716 Sum_probs=336.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccCCCCHHHHHHHHcCccc
Q 003889 83 GIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGVDI 162 (788)
Q Consensus 83 Gv~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~g~~~ 162 (788)
|+++|+++.+++..+++.++++.....+. .+++...|+.|+..++++++++++++++++|.++||||||+|+++||.+.
T Consensus 1 ~~~~Glv~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~~l~g~~~ 79 (416)
T cd01036 1 GLLMGLVAVVLDYAVESSLDAGQWLLRRI-PGSYLLGYLMWVLWSVVLVLISSGICLYFAPQAAGSGIPEVMAYLNGVHL 79 (416)
T ss_pred CeeehHHHHHHHHHHHHHHHHHHHHHHHc-ccchHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHcCCcc
Confidence 67899999999999999999988775432 33345567778888889999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHhccCCcccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhHHHHhhhhhhh
Q 003889 163 HGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGCAAGVA 242 (788)
Q Consensus 163 ~~~l~~~~l~~K~~~~~lsv~sG~svG~EGP~vhiGa~igs~l~~~~~~~~~l~~~~~~~f~~~~~~r~li~~GaaAGva 242 (788)
++++++|+++.|++++++++++|+|+|||||++|+||++|+++++..+..++...+++++++++++||++++||+|||+|
T Consensus 80 ~~~l~~~~~~~K~i~~~l~igsG~svGrEGP~V~iGa~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~r~ll~aGaaAGla 159 (416)
T cd01036 80 PMYLSIRTLIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQGRSRTLGCHVHLFQLFRNPRDRRDFLVAGAAAGVA 159 (416)
T ss_pred cccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccchhhhccCHHHHHHHHHHHhhcchh
Confidence 99999999999999999999999999999999999999999999854333333335566677899999999999999999
Q ss_pred hhhcCCccchhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhccCCCccccCCC-ceEEeeccCCCCCCchhhHHH
Q 003889 243 AAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSG-GFIIWDISDGQEDYSFEELLP 321 (788)
Q Consensus 243 aaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~f~~~-~~~~f~~~~~~~~~~~~~l~~ 321 (788)
|+||||++|++|++||+.++|+.+.+|+.++++++++++.+.+.++........+..+ ..+.++++ ...+++.+|+++
T Consensus 160 AaF~APiaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~ 238 (416)
T cd01036 160 SAFGAPIGGLLFVLEEVSTFFPVRLAWRVFFAALVSAFVIQIYNSFNSGFELLDRSSAMFLSLTVFE-LHVPLNLYEFIP 238 (416)
T ss_pred hccCCcceeeeeeeHHhhccccHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccceeccccC-CCCCCCHHHHHH
Confidence 9999999999999999999999999999999999999998876543211100000000 00122232 245688899999
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhhcccCCcceeeehhHHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCC
Q 003889 322 MAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPP 401 (788)
Q Consensus 322 ~i~lGv~~Gllg~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~~~p~~~ 401 (788)
++++|++||++|.+|+++++...+++++..+.+.++.|++++++++++++++.+
T Consensus 239 ~illGv~~G~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------------------------- 292 (416)
T cd01036 239 TVVIGVICGLLAALFVRLSIIFLRWRRRLLFRKTARYRVLEPVLFTLIYSTIHY-------------------------- 292 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHH--------------------------
Confidence 999999999999999955544444433322222345577788888877766432
Q ss_pred CCCCccccccccCCCccchhhhhhccCcHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCCcCcccchhHHHHH
Q 003889 402 GMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIG 481 (788)
Q Consensus 402 g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iG 481 (788)
...++++++.|+++|++|+|+|+|||+|+|++++|
T Consensus 293 ---------------------------------------------~~~l~~~~~~K~~~t~~t~~sg~pGG~f~Psl~iG 327 (416)
T cd01036 293 ---------------------------------------------APTLLLFLLIYFWMSALAFGIAVPGGTFIPSLVIG 327 (416)
T ss_pred ---------------------------------------------HHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHH
Confidence 12345677889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhc--------CCCchHHHHHHhhhhhhhhhcchhHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 003889 482 STYGRLVGMFVVNFYKK--------LNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAVG 553 (788)
Q Consensus 482 a~~G~l~g~~~~~~~~~--------~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg~~~~l~pi~~~~~~a~~v~ 553 (788)
|++|+++|.+++.+.|. ..++|+.||++||||+++|++|+|+|+++|++|+||++++++|+|+++++|++++
T Consensus 328 A~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~alvGmaa~l~~~~r~Plt~~vi~~ElTg~~~~l~pl~ia~~ia~~v~ 407 (416)
T cd01036 328 AAIGRLVGLLVHRIAVAGIGAESATLWADPGVYALIGAAAFLGGTTRLTFSICVIMMELTGDLHHLLPLMVAILIAKAVA 407 (416)
T ss_pred HHHHHHHHHHHHHHccccccccccCCccChHHHHHHHHHHHhhhhhcchHhhhhheeeccCChhhHHHHHHHHHHHHHHH
Confidence 99999999999887653 2478999999999999999999999999999999999999999999999999999
Q ss_pred hhhCccHHH
Q 003889 554 DAFSEGLYE 562 (788)
Q Consensus 554 ~~~~~~iy~ 562 (788)
+.+++++||
T Consensus 408 ~~~~~siY~ 416 (416)
T cd01036 408 DAFCESLYH 416 (416)
T ss_pred HhhCCCCCC
Confidence 999999997
No 9
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=100.00 E-value=3.8e-58 Score=514.34 Aligned_cols=401 Identities=29% Similarity=0.499 Sum_probs=333.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccCCCCHHHHHHHHcCcc
Q 003889 82 IGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGVD 161 (788)
Q Consensus 82 iGv~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~g~~ 161 (788)
+|+++|+++.+|+..+++++++++....... ..+..|+.++.++.+++++++++++++.|.++|+|+|+++++++|..
T Consensus 1 iGi~~G~~~~~f~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~l~~~~~p~~~g~G~~~v~~~l~~~~ 78 (402)
T cd01031 1 IGLLAGLVAVLFRLGIDKLGNLRLSLYDFAA--NNPPLLLVLPLISAVLGLLAGWLVKKFAPEAKGSGIPQVEGVLAGLL 78 (402)
T ss_pred CeehHhHHHHHHHHHHHHHHHHHHHHHHhcc--cccHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHHcCCC
Confidence 5899999999999999999999887532211 22223445566677778888899888999999999999999999854
Q ss_pred cccchhhHHHHHHHHHHHHHhccCCcccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhHHHHhhhhhh
Q 003889 162 IHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGCAAGV 241 (788)
Q Consensus 162 ~~~~l~~~~l~~K~~~~~lsv~sG~svG~EGP~vhiGa~igs~l~~~~~~~~~l~~~~~~~f~~~~~~r~li~~GaaAGv 241 (788)
+...+++++.|++++++++++|+|+|||||++|+|+++|+++++ +++. ++.++|++++||+|||+
T Consensus 79 --~~~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga~ig~~~~~-----------~~~~--~~~~~~~l~~~g~aag~ 143 (402)
T cd01031 79 --PPNWWRVLPVKFVGGVLALGSGLSLGREGPSVQIGAAIGQGVSK-----------WFKT--SPEERRQLIAAGAAAGL 143 (402)
T ss_pred --CcccHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHH-----------HhcC--CHHHHHHHHHHHHHHhH
Confidence 34678999999999999999999999999999999999999997 3343 57789999999999999
Q ss_pred hhhhcCCccchhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhccCCCccccCCCceEEeeccCCCCCCchhhHHH
Q 003889 242 AAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLP 321 (788)
Q Consensus 242 aaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~~~~l~~ 321 (788)
+++||||++|++|++|++.++|+.+.+++.++++.+|+++.+.+ +++++ .|.++ ....++..|+++
T Consensus 144 aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~a~~~a~~v~~~~-----------~~~~~--~~~~~-~~~~~~~~~l~~ 209 (402)
T cd01031 144 AAAFNAPLAGVLFVLEELRHSFSPLALLTALVASIAADFVSRLF-----------FGLGP--VLSIP-PLPALPLKSYWL 209 (402)
T ss_pred HHHhCCccHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH-----------cCCCc--eEecC-CCCCCCHHHHHH
Confidence 99999999999999999999888889999999999998888753 23333 34444 245688999999
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhhcccCCcceeeehhHHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCC
Q 003889 322 MAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPP 401 (788)
Q Consensus 322 ~i~lGv~~Gllg~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~~~p~~~ 401 (788)
++++|+++|++|.+|+ +.+.+.++++.+. .+..+++.+.+.+++++++.++.|+. .
T Consensus 210 ~illGv~~G~~g~~f~---~~~~~~~~~~~~~-~~~~~~~~~~l~gl~~~~~~~~~p~~--------------------~ 265 (402)
T cd01031 210 LLLLGIIAGLLGYLFN---RSLLKSQDLYRKL-KKLPRELRVLLPGLLIGPLGLLLPEA--------------------L 265 (402)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHhc-ccCChhHHHHHHHHHHHHHHHHHHHH--------------------h
Confidence 9999999999999999 5555555444221 12234555677788888888887765 1
Q ss_pred CCCCccccccccCCCccchhhhhhccCcHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCCcCcccchhHHHHH
Q 003889 402 GMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIG 481 (788)
Q Consensus 402 g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iG 481 (788)
| +| | +.++.+++ +++++..++++++.|+++|++|+|+|+|||+|+|++++|
T Consensus 266 g-----------~G--~------------~~i~~~~~----~~~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iG 316 (402)
T cd01031 266 G-----------GG--H------------GLILSLAG----GNFSISLLLLIFVLRFIFTMLSYGSGAPGGIFAPMLALG 316 (402)
T ss_pred C-----------CH--H------------HHHHHHHc----CCchHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 2 12 2 33444443 345667788888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCchHHHHHHhhhhhhhhhcchhHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhh-CccH
Q 003889 482 STYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAVGDAF-SEGL 560 (788)
Q Consensus 482 a~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg~~~~l~pi~~~~~~a~~v~~~~-~~~i 560 (788)
|++|+++|++++.+++....+|+.||++||+|+++|++|+|++++++++|+||++++++|+|+++++|+++++.+ ++++
T Consensus 317 a~~G~~~g~~~~~~~~~~~~~~~~~a~~G~aa~~a~~~~aPlta~vl~~Eltg~~~~l~p~~ia~~ia~~v~~~~~~~si 396 (402)
T cd01031 317 ALLGLLFGTILVQLGPIPISAPATFAIAGMAAFFAAVVRAPITAIILVTEMTGNFNLLLPLMVVCLVAYLVADLLGGKPI 396 (402)
T ss_pred HHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 999999999999887766789999999999999999999999999999999999999999999999999999998 9999
Q ss_pred HHHHHH
Q 003889 561 YEEQAH 566 (788)
Q Consensus 561 y~~~l~ 566 (788)
||.+++
T Consensus 397 Y~~~l~ 402 (402)
T cd01031 397 YEALLE 402 (402)
T ss_pred hHHHhC
Confidence 998763
No 10
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=1.4e-57 Score=508.77 Aligned_cols=411 Identities=17% Similarity=0.258 Sum_probs=326.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhhHHHHHHHHHHHHHHHHHhhhcccc--ccCCCCH
Q 003889 74 VKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTF-SIIQKSYFAGFLVYILINLILVFSSVYIITKFAP--AAAGSGI 150 (788)
Q Consensus 74 ~~w~~~~liGv~~Gl~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p--~a~GsGi 150 (788)
++|++++++|+++|+.+.+|+..+++++++.+.... ++.+.....++++...++++.+++++++..++.| ..+++|+
T Consensus 3 ~~~~~a~~iG~~~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ggll~g~~~~~~~~~~~~~~~g~ 82 (418)
T PRK01610 3 RRLLIATVVGILAALAVAGFRHAMLLLEWLFLSNDSGSLVNAATNLSPWRRLLTPALGGLAAGLLLWGWQKFTQQRPHAP 82 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchhhcccccchHHHHHHHHHHHHHHHHHHHHHcccccccCCCc
Confidence 456689999999999999999999998775443211 1111111112223445666778888887777765 4788999
Q ss_pred HHHHHHHcCcccccchhhHHHHHHHHHHHHHhccCCcccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhh
Q 003889 151 PEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRR 230 (788)
Q Consensus 151 pev~~~l~g~~~~~~l~~~~l~~K~~~~~lsv~sG~svG~EGP~vhiGa~igs~l~~~~~~~~~l~~~~~~~f~~~~~~r 230 (788)
+++++.++. ++.+++|+.+.|++++++++++|+|+|||||++|+|+++|++++| +++ +++|||
T Consensus 83 ~~vi~av~~---~g~~~~~~~~~k~~~~~l~igsG~S~GrEGP~v~iGa~~g~~~~~-----------~~~---~~~~~r 145 (418)
T PRK01610 83 TDYMEALQT---DGQFDYAASLVKSLASLLVVTSGSAIGREGAMILLAALAASCFAQ-----------RFT---PRQEWK 145 (418)
T ss_pred HHHHHHHHc---CCCCCccHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH-----------HhC---ChHHHH
Confidence 998887764 367889999999999999999999999999999999999999997 343 568899
Q ss_pred hHHHHhhhhhhhhhhcCCccchhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhccCCCccccCCCceEEeeccCC
Q 003889 231 DLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDG 310 (788)
Q Consensus 231 ~li~~GaaAGvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~~~ 310 (788)
++++||+|||+||+||||++|++|++|++.+.++.+.+.++++++++++++.+.+ ++.. ...|+++ .
T Consensus 146 ~li~~GaaAGlaa~F~aPlaG~lFa~E~l~~~~~~~~~~p~~ias~~a~~v~~~~-----------~g~~-~~~~~i~-~ 212 (418)
T PRK01610 146 LWIACGAAAGMASAYHAPLAGSLFIAEILFGTLMLASLGPVVISAVVALLTTNLL-----------NGSD-ALLYNVQ-L 212 (418)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-----------cCCC-CCeeecC-C
Confidence 9999999999999999999999999999988887777778888777777776643 2221 1235555 3
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhcccCCcceeeehhHHHHHHHHHHhcccccccCCCCCCCC
Q 003889 311 QEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESD 390 (788)
Q Consensus 311 ~~~~~~~~l~~~i~lGv~~Gllg~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~ 390 (788)
...++..+++.++++|+++|++|.+|+ +.+++..+++.+.+ ..+++.+.+.+++++++.++.|+.
T Consensus 213 ~~~~~~~~l~~~i~lGii~Gl~g~~f~---~~~~~~~~~~~~~~--~~~~~~~~lggli~g~l~~~~p~~---------- 277 (418)
T PRK01610 213 SVTVQARDYALIISTGLLAGLCGPLLL---TLMNASHRGFVSLK--LAPPWQLALGGLIVGLLSLFTPAV---------- 277 (418)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHcccc--cchhHHHHHHHHHHHHHHHHhhHH----------
Confidence 456788999999999999999999999 66666655543222 223455677888888888877765
Q ss_pred CCCCCCCCCCCCCCCccccccccCCCccchhhhhhccCcHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCCcC
Q 003889 391 LDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVP 470 (788)
Q Consensus 391 ~~~~~~~p~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~ 470 (788)
.| .+|+. ++.+++ .+.....++++++.|+++|++|+|+|+|
T Consensus 278 ----------~G-------------~G~~~------------i~~~~~----~~~~~~~l~~l~l~K~~~t~lt~gsG~~ 318 (418)
T PRK01610 278 ----------WG-------------NGYSV------------VQSFLT----APPLLMLIAGIFLCKLLAVLASSGSGAP 318 (418)
T ss_pred ----------hC-------------CcHHH------------HHHHHc----CChhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 12 22433 333332 1234455666788999999999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHhhhhhhhhhcchhHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 003889 471 AGQFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISK 550 (788)
Q Consensus 471 gG~f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg~~~~l~pi~~~~~~a~ 550 (788)
||+|.|++++||++|.++|++++.+++....++..||++||+|++++++|+|++++++++|+||++++++|+|+++++|+
T Consensus 319 GG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~~~~a~vGmaA~laa~~~aPltaivl~~Eltg~~~~~~p~~ia~~ia~ 398 (418)
T PRK01610 319 GGVFTPTLFVGLAIGMLYGRSLGLWLPDGEEITLLLGLTGMATLLAATTHAPIMSTLMICEMTGEYQLLPGLLIACVIAS 398 (418)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHhCCHhHHHHHHHHHHHHH
Confidence 99999999999999999999998776544556789999999999999999999999999999999999999999999999
Q ss_pred HHHhhh-CccHHHHHHHHc
Q 003889 551 AVGDAF-SEGLYEEQAHLR 568 (788)
Q Consensus 551 ~v~~~~-~~~iy~~~l~~k 568 (788)
++++.+ ++++||.++..+
T Consensus 399 ~vs~~~~~~siy~~~~~~~ 417 (418)
T PRK01610 399 VISRTLRRDSIYRQHTAEH 417 (418)
T ss_pred HHHHHhCCCCchHHHHhcc
Confidence 999988 999999998654
No 11
>PRK05277 chloride channel protein; Provisional
Probab=100.00 E-value=7.3e-57 Score=508.68 Aligned_cols=411 Identities=27% Similarity=0.506 Sum_probs=328.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccCCCCHHHHHHH
Q 003889 77 FFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGY 156 (788)
Q Consensus 77 ~~~~liGv~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~ 156 (788)
++++++|+++|+++.+|+..+++++++++..... .....+..|..++.++.+++.++.+++++++|.++|+|+||++++
T Consensus 2 ~~~i~iGi~~Gl~~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~p~~~GsGi~~i~~~ 80 (438)
T PRK05277 2 FMAAVVGTLTGLVGVAFELAVDWVQNQRLGLLAS-VADNGLLLWIVAFLISAVLAMIGYFLVRRFAPEAGGSGIPEIEGA 80 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccchHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHH
Confidence 4688999999999999999999999998765332 111122334444556667777888899999999999999999999
Q ss_pred HcCcccccchhhHHHHHHHHHHHHHhccCCcccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhHHHHh
Q 003889 157 LNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCG 236 (788)
Q Consensus 157 l~g~~~~~~l~~~~l~~K~~~~~lsv~sG~svG~EGP~vhiGa~igs~l~~~~~~~~~l~~~~~~~f~~~~~~r~li~~G 236 (788)
+++.+... ..++++.|++++++++++|+|+|||||++|+|+++|+++++ +++. +++.++|++++||
T Consensus 81 l~~~~~~~--~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iGa~ig~~~~~-----------~~~~-~~~~~~~~li~~G 146 (438)
T PRK05277 81 LEGLRPVR--WWRVLPVKFFGGLGTLGSGMVLGREGPTVQMGGNIGRMVLD-----------IFRL-RSDEARHTLLAAG 146 (438)
T ss_pred HcCCCccc--hHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHH-----------Hccc-CCHHHHHHHHHHH
Confidence 99754221 25789999999999999999999999999999999999987 3332 2567899999999
Q ss_pred hhhhhhhhhcCCccchhhhhhhhchhh--hhhhHHHHHHHHHHHHHHHHHhhhhccCCCccccCCCceEEeeccCCCCCC
Q 003889 237 CAAGVAAAFRAPVGGVLFALEEVTSWW--RSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQEDY 314 (788)
Q Consensus 237 aaAGvaaaF~APigGvlFalE~~~~~~--~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~~~ 314 (788)
+|||+||+||||++|++|++|++.+.+ +.+.+++.++++++++++.+.+. +..+ .++++. ...+
T Consensus 147 ~aaglaa~f~APl~g~lf~~E~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~~-----------g~~~--~~~~~~-~~~~ 212 (438)
T PRK05277 147 AAAGLAAAFNAPLAGILFVIEEMRPQFRYSLISIKAVFIGVIMATIVFRLFN-----------GEQA--VIEVGK-FSAP 212 (438)
T ss_pred HHHhHHHhcCCchHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhc-----------CCCc--eEeccC-CCCC
Confidence 999999999999999999999987643 66678888888888888877542 2233 344442 2345
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhcc-cCCcce-eeehhHHHHHHHHHHhcccccccCCCCCCCCCC
Q 003889 315 SFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHK-KGNRVK-IIEACVISVITSVISFGLPLLRKCSPCPESDLD 392 (788)
Q Consensus 315 ~~~~l~~~i~lGv~~Gllg~~f~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~ 392 (788)
+..+++.++++|+++|++|.+|+ +.+.+..+++.+. +.++++ ++.+.+++++++++.++.|..
T Consensus 213 ~~~~l~~~i~lGi~~G~~g~lf~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~gl~~g~l~~~~p~~------------ 277 (438)
T PRK05277 213 PLNTLWLFLLLGIIFGIFGVLFN---KLLLRTQDLFDRLHGGNKKRWVLMGGAVGGLCGLLGLLAPAA------------ 277 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHhhhh------------
Confidence 67889999999999999999999 5555555544221 122222 234556667777777766654
Q ss_pred CCCCCCCCCCCCCccccccccCCCccchhhhhhccCcHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCCcCcc
Q 003889 393 SGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAG 472 (788)
Q Consensus 393 ~~~~~p~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG 472 (788)
.| .+|+ .++..++ +++++..++.+++.|++++++|+|+|+|||
T Consensus 278 --------~g-------------~G~~------------~i~~~~~----~~~~~~~l~~~~~~K~i~t~ls~gsG~~GG 320 (438)
T PRK05277 278 --------VG-------------GGFN------------LIPIALA----GNFSIGMLLFIFVARFITTLLCFGSGAPGG 320 (438)
T ss_pred --------cC-------------ChHH------------HHHHHHc----CCchHHHHHHHHHHHHHHHHHHHcCCCcHH
Confidence 12 2233 3444443 235566677788999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHhhhhhhhhhcchhHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Q 003889 473 QFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAV 552 (788)
Q Consensus 473 ~f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg~~~~l~pi~~~~~~a~~v 552 (788)
+|.|++++||++|+++|.+++.++|....+|..|+++||+|+++|++|+|+|++++++|+||++++++|+++++++|+++
T Consensus 321 ~f~Psl~iGa~~G~~~g~~~~~~~p~~~~~~~~~a~~G~aA~la~~~~aPlt~~v~~~Eltg~~~~l~p~lia~~~A~~v 400 (438)
T PRK05277 321 IFAPMLALGTLLGLAFGMVAAALFPQYHIEPGTFAIAGMGALFAATVRAPLTGIVLVLEMTDNYQLILPLIITCLGATLL 400 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Confidence 99999999999999999999888776678999999999999999999999999999999999999999999999999999
Q ss_pred Hhhh-CccHHHHHHHHc
Q 003889 553 GDAF-SEGLYEEQAHLR 568 (788)
Q Consensus 553 ~~~~-~~~iy~~~l~~k 568 (788)
++.+ ++++||.++++.
T Consensus 401 ~~~~~~~~iy~~~l~~~ 417 (438)
T PRK05277 401 AQFLGGKPIYSALLERT 417 (438)
T ss_pred HHHhCCCChHHHHHHHH
Confidence 9999 789999999764
No 12
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-54 Score=487.25 Aligned_cols=411 Identities=27% Similarity=0.434 Sum_probs=321.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH-HhhhccccccCCCCHHHH
Q 003889 75 KWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSV-YIITKFAPAAAGSGIPEI 153 (788)
Q Consensus 75 ~w~~~~liGv~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~p~a~GsGipev 153 (788)
.+....++|+++|+.....+....+.......... ..+....| +.+.....++++++ ++..++.|+++|+|+|++
T Consensus 22 ~i~~~~~lgvi~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~l~~~~~gl~~g~~~~~~~~p~~~g~Gi~~~ 97 (443)
T COG0038 22 LIGIAAALGVIVGLFAVALDLALLLLGRLRGGLLS---AAQAPGPW-LLPLVPALGGLLVGALLVYKFAPEARGSGIPQA 97 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc---ccccchhH-HHHHHHHHHHHHHHHHHHHHhCccccCCChhHH
Confidence 33467777777777666666666655544322110 01111122 22333445555555 688889999999999999
Q ss_pred HHHHcCcccccchhhHHHHHHHHHHHHHhccCCcccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhHH
Q 003889 154 KGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLV 233 (788)
Q Consensus 154 ~~~l~g~~~~~~l~~~~l~~K~~~~~lsv~sG~svG~EGP~vhiGa~igs~l~~~~~~~~~l~~~~~~~f~~~~~~r~li 233 (788)
++.+++. ++.+++|..++|+++++++++||+|+|||||++|+|+++|+.+++ |++. +++|||.++
T Consensus 98 i~a~~~~--~~~~~~~~~~vk~~~~~l~i~sG~s~GrEGP~vqiga~~g~~~~~-----------~l~~--~~~~~r~Ll 162 (443)
T COG0038 98 IEALHGR--KGRISPRVLPVKLVATLLTIGSGASLGREGPSVQIGAAIGSLLGR-----------LLKL--SREDRRILL 162 (443)
T ss_pred HHHHhcC--CCcccHHHHHHHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHH-----------HhCC--CHHHHHHHH
Confidence 9998874 467889999999999999999999999999999999999999997 4443 578999999
Q ss_pred HHhhhhhhhhhhcCCccchhhhhhhhchh-hhhhhHHHHHHHHHHHHHHHHHhhhhccCCCccccCCCceEEeeccCCCC
Q 003889 234 TCGCAAGVAAAFRAPVGGVLFALEEVTSW-WRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQE 312 (788)
Q Consensus 234 ~~GaaAGvaaaF~APigGvlFalE~~~~~-~~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~ 312 (788)
+||+|||+||+|||||+|++|++|++... |+.+.+++.++++.++..+.+.+ ++.+ ..+.+.. ..
T Consensus 163 ~~GaAaGlaaaF~aPlagvlF~~E~l~~~~~~~~~l~p~~vaa~va~~v~~~~-----------~~~~--~~~~~~~-~~ 228 (443)
T COG0038 163 AAGAAAGLAAAFNAPLAGALFAIEVLYGRFLEYRALVPVLVAAVVALLVAGLF-----------GGPH--FLLPIVT-TP 228 (443)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHc-----------CCCC--ceeeccc-cC
Confidence 99999999999999999999999999887 88888888888887777776643 1212 2334432 46
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhcccCCcceeeehhHHHHHHHHHHhcccccccCCCCCCCCCC
Q 003889 313 DYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLD 392 (788)
Q Consensus 313 ~~~~~~l~~~i~lGv~~Gllg~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~ 392 (788)
.++.++++.++++|+++|++|.+|. +.+.+.++.+. +.+..+.+.+.+.+++++++.++.|..
T Consensus 229 ~~~~~~~~~~~~lGii~G~~g~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~g~l~g~~~l~~P~~------------ 291 (443)
T COG0038 229 HMSLWDLLLYLVLGIIAGLFGVLLS---RLLALSRRFFR--RLPLPPLLRPALGGLLVGALGLLFPEV------------ 291 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHh--cCcchHHHHHHHHHHHHHHHHHhchhh------------
Confidence 6789999999999999999999999 44433333222 222335677788888889999888876
Q ss_pred CCCCCCCCCCCCCccccccccCCCccchhhhhhccCcHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCCcCcc
Q 003889 393 SGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAG 472 (788)
Q Consensus 393 ~~~~~p~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG 472 (788)
.| .|+++.+ ..++ .++.+..++.+++.|+++|.+|+|+|.|||
T Consensus 292 --------lg-----------~G~~~~~--------------~~~~----~~~~~~~l~~l~~~K~l~t~~s~gSG~~GG 334 (443)
T COG0038 292 --------LG-----------NGYGLIQ--------------LALA----GEGGLLVLLLLFLLKLLATLLSYGSGAPGG 334 (443)
T ss_pred --------hC-----------CCccHHH--------------HHHc----cCccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 12 2332222 1222 223333367788999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHhhhhhhhhhcchhHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Q 003889 473 QFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAV 552 (788)
Q Consensus 473 ~f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg~~~~l~pi~~~~~~a~~v 552 (788)
+|+|++++||++|..+|.+++..++.....|+.|+++||++++++++|+|++++++++|+||++++++|+|+++++|+.+
T Consensus 335 if~Psl~iGa~lG~~~g~~~~~~~~~~~~~~~~~al~Gm~a~la~~~~aPlta~vlv~EmTg~~~~~l~ll~a~~ia~~~ 414 (443)
T COG0038 335 IFAPSLFIGAALGLAFGALLGLLFPPSILEPGLFALLGMAAFLAATTRAPLTAIVLVLEMTGNYQLLLPLLIACLIAYLV 414 (443)
T ss_pred eehHHHHHHHHHHHHHHHHHHhhcCccccchHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCcchHHHHHHHHHHHHHH
Confidence 99999999999999999999988765567788999999999999999999999999999999999999999999999999
Q ss_pred Hhhh-CccHHHHHHHHcCCCC
Q 003889 553 GDAF-SEGLYEEQAHLRGVPL 572 (788)
Q Consensus 553 ~~~~-~~~iy~~~l~~kg~p~ 572 (788)
++.. ++++|++.+++++.+.
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~ 435 (443)
T COG0038 415 SRLLGGRPIYTQLLARRGAPI 435 (443)
T ss_pred HHHhCCCcHHHHHHHhcCchh
Confidence 9988 8899999999998773
No 13
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=100.00 E-value=5e-55 Score=480.98 Aligned_cols=348 Identities=35% Similarity=0.603 Sum_probs=273.9
Q ss_pred HHHHHHHhhhccccccCCCCHHHHHHHHcCcccccchhhHHHHHHHHHHHHHhccCCcccccchHHHHHHHHHHHhhccC
Q 003889 130 LVFSSVYIITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGG 209 (788)
Q Consensus 130 ~~~~~~~l~~~~~p~a~GsGipev~~~l~g~~~~~~l~~~~l~~K~~~~~lsv~sG~svG~EGP~vhiGa~igs~l~~~~ 209 (788)
++++++++++++.|.++|+||||+++.+++.+ +.+++|+.+.|++++++++++|+|+|||||++|+|+++|++++|
T Consensus 2 ~~~~~~~l~~~~~p~~~g~Gi~~v~~~~~~~~--~~~~~~~~~~k~~~~~~s~~~G~s~G~EGp~v~iga~i~~~~~~-- 77 (355)
T PF00654_consen 2 GGLLSGLLWKKFAPEAAGSGIPEVKAALRGKS--GRLPFRTLPVKFVGSILSLGSGLSVGREGPSVQIGAAIGSWLGR-- 77 (355)
T ss_dssp HHHHHHHHHHHC-GGGSB-SHHHHHHHCTTSS-----HHHHHHHHHHHHHHHHHTT-S-BSHHHHHHHHHHHHHHHHH--
T ss_pred EEEEeeHHHHHHCCccCCCCHHHHHHHHhCCC--CCCCHHHHHHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHH--
Confidence 46778889999999999999999999999854 34899999999999999999999999999999999999999997
Q ss_pred ccccccccccccccCChhh-hhhHHHHhhhhhhhhhhcCCccchhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 003889 210 STKYHLRYRWLQVFRSDRD-RRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGW 288 (788)
Q Consensus 210 ~~~~~l~~~~~~~f~~~~~-~r~li~~GaaAGvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~~~~ 288 (788)
+++. ++.+ +|.+++||+|||+||+||||++|++|++|++.++++.+.+++.++++++++++.+.+..
T Consensus 78 ---------~~~~--~~~~~~r~l~~~g~aAglaa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~~- 145 (355)
T PF00654_consen 78 ---------RFRL--SRNETRRLLLAAGAAAGLAAAFNAPLAGVLFALEELSRDFSVRLLLPALVASIVATLVSRLLFG- 145 (355)
T ss_dssp ---------HTT----CHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHCCTCHCCSTTTHHHHHHHHHHHHHHHHHHHT-
T ss_pred ---------hhcc--cchHHHhHHHHHHHHHHHHHHhcCCcccceehhheeeccccchhhHHHHHHHHHHHHHHHHHcC-
Confidence 3333 3344 77799999999999999999999999999999999999999999999999999987643
Q ss_pred ccCCCccccCCCceEEee-ccCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhcccCCcceeeehhHHH
Q 003889 289 CKSGKCGHFGSGGFIIWD-ISDGQEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVIS 367 (788)
Q Consensus 289 ~~~~~~~~f~~~~~~~f~-~~~~~~~~~~~~l~~~i~lGv~~Gllg~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (788)
..+ .|+ ++ ....+++.++++++++|++||++|.+|+++++..+++.+++. +.+..+++++.+.+
T Consensus 146 ----------~~~--~f~~~~-~~~~~~~~~~~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~--~~~~~~~l~~~i~g 210 (355)
T PF00654_consen 146 ----------NHP--IFGSVP-QLFPFSLWELPLFLLLGIICGLLGALFNRLLRWLRKFFRKLK--RLKIPPILRPVIGG 210 (355)
T ss_dssp ----------SS---SS---T-T-----GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHH
T ss_pred ----------cCc--cccccc-ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccccchHHHHHHHH
Confidence 222 233 43 234789999999999999999999999955544444333321 22233456889999
Q ss_pred HHHHHHHhcccc--cccCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCccchhhhhhccCcHHHHHHHhcccCCCch
Q 003889 368 VITSVISFGLPL--LRKCSPCPESDLDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEY 445 (788)
Q Consensus 368 ~~~~~~~~~~p~--~~~c~~~~~~~~~~~~~~p~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~ 445 (788)
++++++.++.|+ + .| .| |+. ++.+++++ ...+
T Consensus 211 l~~g~l~~~~p~~~~--------------------~g-----------~G--~~~------------i~~ll~~~-~~~~ 244 (355)
T PF00654_consen 211 LVIGLLAFFFPEGSV--------------------LG-----------SG--YEL------------IQSLLSGS-PPWF 244 (355)
T ss_dssp HHHHHHHHSSGG-SG--------------------SS-----------SS--TTH------------HHHHCTT-----S
T ss_pred HHHHHHHHHHhhhcc--------------------cC-----------Cc--HHH------------HHHHHcCC-cchh
Confidence 999999999886 4 12 22 333 45555432 1246
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCcCcccchhHHHHHHHHHHHHHHHHHHhhhcC-CCchHHHHHHhhhhhhhhhcchhHH
Q 003889 446 SAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVNFYKKL-NIEEGTYALLGAASFLGGSMRMTVS 524 (788)
Q Consensus 446 ~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~~~~~~-~~~~~~~aliGaaa~l~g~~r~pis 524 (788)
++..++++++.|+++|++|+++|+|||+|+|++++||++|+++|.+++..+|+. ..+|+.|+++||+|++++++|+|++
T Consensus 245 ~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~~~~~~~~~~~~~~~~~~~~al~G~~a~~~a~~~~Plt 324 (355)
T PF00654_consen 245 SLGSLLLLFLLKFLATALTLGSGAPGGIFFPSLFIGAALGRLFGALLGSFFPGISSVDPGVYALVGMAAFLAAVTRAPLT 324 (355)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTT-BSBSHHHHHHHHHHHHHHHHHHHHHH-GGG-T-SHHHHHHHHTTHHHHHHCS-HHH
T ss_pred hHHHHHHHHHHHHHHHHHhcCccCCCCEEccHHHHHHHHHHHHHHHHHhhCCCcCCCchHHHHHHHHHHHHHHHHHhHHH
Confidence 788899999999999999999999999999999999999999999999986532 3489999999999999999999999
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHHHHh
Q 003889 525 LCVIMVEITNNLKFLPLIMLVLLISKAVGD 554 (788)
Q Consensus 525 ~~vi~~E~Tg~~~~l~pi~~~~~~a~~v~~ 554 (788)
++++++|+||++++++|+|+++++|+.+++
T Consensus 325 ~~vl~~Eltg~~~~~~p~lia~~~a~~v~~ 354 (355)
T PF00654_consen 325 AIVLVLELTGDFQLLLPLLIAVAVAYLVAR 354 (355)
T ss_dssp HHHHHHHHH--GGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999986
No 14
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=2.7e-54 Score=480.74 Aligned_cols=386 Identities=26% Similarity=0.410 Sum_probs=296.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccCCCCHHHHHHHHcCc---ccc
Q 003889 87 GLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGV---DIH 163 (788)
Q Consensus 87 Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~g~---~~~ 163 (788)
|+++..|+..+++++++.+.... .+ +|+.+++.+++.+ +..+++.++.|.++||||||+++.+++. +.+
T Consensus 1 g~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~p~~~~-~~~~~~~~~~p~~~gsGi~~v~~~~~~~~~~~~~ 72 (390)
T cd01034 1 GLVALLFAKLADLALALFQRLTA----TH---PWLPLLLTPAGFA-LIAWLTRRFFPGAAGSGIPQVIAALELPSAAARR 72 (390)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHH----hc---hHHHHHHHHHHHH-HHHHHHHhhCCCCCCCCHHHHHHHHccccccccc
Confidence 56788899999999887764421 11 2333444554444 4455666789999999999999999853 355
Q ss_pred cchhhHHHHHHHHHHHHHhccCCcccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhHHHHhhhhhhhh
Q 003889 164 GILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGCAAGVAA 243 (788)
Q Consensus 164 ~~l~~~~l~~K~~~~~lsv~sG~svG~EGP~vhiGa~igs~l~~~~~~~~~l~~~~~~~f~~~~~~r~li~~GaaAGvaa 243 (788)
+++++|+++.|++++++++++|+|+|||||++|+|+++|++++| +++. +++++||++++||+|||+||
T Consensus 73 ~~~~~r~~~~k~i~~~l~i~~G~s~GrEGP~v~iga~i~~~~~~-----------~~~~-~~~~~~r~li~~GaaAGlaa 140 (390)
T cd01034 73 RLLSLRTAVGKILLTLLGLLGGASVGREGPSVQIGAAVMLAIGR-----------RLPK-WGGLSERGLILAGGAAGLAA 140 (390)
T ss_pred ccccHHHHHHHHHHHHHHHHcCCCcCCcccHHHHHHHHHHHHHH-----------Hccc-CchHHHHHHHHHHHHHhHHH
Confidence 68999999999999999999999999999999999999999997 3332 13689999999999999999
Q ss_pred hhcCCccchhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhccCCCccccCCCceEEeeccCCCCCCchhhHHHHH
Q 003889 244 AFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLPMA 323 (788)
Q Consensus 244 aF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~~~~l~~~i 323 (788)
+||||++|++|++|++.++|+.+..++.+.++++++++.+.+ +++.+ .|+++. ...+++.++++++
T Consensus 141 ~F~aPlaG~lF~~E~~~~~~~~~~~~~~~~~~~~a~~~~~~~-----------~g~~~--~f~~~~-~~~~~~~~~~~~i 206 (390)
T cd01034 141 AFNTPLAGIVFAIEELSRDFELRFSGLVLLAVIAAGLVSLAV-----------LGNYP--YFGVAA-VALPLGEAWLLVL 206 (390)
T ss_pred HhCCcchhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH-----------cCCCC--ccCCCC-CCcCCHHHHHHHH
Confidence 999999999999999999998888889888888888877653 23222 234332 2335678899999
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhhhcccCCcceeeehhHHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCCCC
Q 003889 324 VIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPPGM 403 (788)
Q Consensus 324 ~lGv~~Gllg~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~~~p~~~g~ 403 (788)
++|+++|++|.+|++.....++..+++.+.+.+.++++.+.+.+++++++.++.|.. .
T Consensus 207 llGii~G~~g~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~--------------------~-- 264 (390)
T cd01034 207 VCGVVGGLAGGLFARLLVALSSGLPGWVRRFRRRRPVLFAALCGLALALIGLVSGGL--------------------T-- 264 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHhCCCc--------------------c--
Confidence 999999999999994443333332222111112223445556666666666654321 0
Q ss_pred CCccccccccCCCccchhhhhhccCcHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCCcCcccchhHHHHHHH
Q 003889 404 YGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGST 483 (788)
Q Consensus 404 ~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~ 483 (788)
.|.+|+. ++.+++++. .. ...+++.|+++|++|+|+|+|||.|.|++++||+
T Consensus 265 ----------~G~G~~~------------i~~~~~~~~--~~----~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~iGa~ 316 (390)
T cd01034 265 ----------FGTGYLQ------------ARAALEGGG--GL----PLWFGLLKFLATLLSYWSGIPGGLFAPSLAVGAG 316 (390)
T ss_pred ----------ccCcHHH------------HHHHHhCCC--cc----cHHHHHHHHHHHHHHHHcCCCcceechHHHHHHH
Confidence 1222333 344443221 11 1235679999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCchHHHHHHhhhhhhhhhcchhHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhh-CccHHH
Q 003889 484 YGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAVGDAF-SEGLYE 562 (788)
Q Consensus 484 ~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg~~~~l~pi~~~~~~a~~v~~~~-~~~iy~ 562 (788)
+|++++.+++ ..+|..|+++||+|++++++|+|+|++++++|+|+++++++|+|+++++|+++++.+ ++++||
T Consensus 317 ~G~~~~~~~~------~~~~~~~a~~G~aA~laa~~~aPlt~~vl~~Elt~~~~~l~p~lia~~~A~~v~~~~~~~~iY~ 390 (390)
T cd01034 317 LGSLLAALLG------SVSQGALVLLGMAAFLAGVTQAPLTAFVIVMEMTGDQQMLLPLLAAALLASGVSRLVCPEPLYH 390 (390)
T ss_pred HHHHHHHHhc------CCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 9999998763 258999999999999999999999999999999999999999999999999999998 788886
No 15
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=3.3e-54 Score=478.49 Aligned_cols=385 Identities=23% Similarity=0.304 Sum_probs=304.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHHHHHhhhccccccCCCCHHHHHHHHcCcc
Q 003889 83 GIGTGLAAVFINISVENFAGWKFSLTFSIIQKS-YFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGVD 161 (788)
Q Consensus 83 Gv~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~g~~ 161 (788)
|+++|+.+..|+..+++++++.+........+. ...++++....+++.+++++++. ++.+ ..|+|+||+++++++.
T Consensus 1 G~~~gl~a~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ggl~~~l~~-~~~~-~~g~gi~~v~~~~~~~- 77 (388)
T cd01033 1 GVGAGLGGGLLTLLLHGVQHLAFGYSEGSFLTGVAAVSPIRRALSLTVGGLIAGLGW-YLLR-RKGKKLVSIKQAVRGK- 77 (388)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCccccchhhhccCChHHHHHHHHHHHHHHHHHH-HHHh-ccCCCcccHHHHhcCC-
Confidence 688999999999999999999876422111111 11122233344556666666654 4333 4699999999999873
Q ss_pred cccchhhHHHHHHHHHHHHHhccCCcccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhHHHHhhhhhh
Q 003889 162 IHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGCAAGV 241 (788)
Q Consensus 162 ~~~~l~~~~l~~K~~~~~lsv~sG~svG~EGP~vhiGa~igs~l~~~~~~~~~l~~~~~~~f~~~~~~r~li~~GaaAGv 241 (788)
+.+++++.+.|.+++++++++|+|+|||||++|+|+++|++++| +++. ++++||++++||+|||+
T Consensus 78 --~~~~~~~~~~k~~~~~l~ig~G~s~G~EGP~v~iGa~i~~~~~~-----------~~~~--~~~~~r~li~~GaaAGl 142 (388)
T cd01033 78 --KRMPFWETIIHAVLQIVTVGLGAPLGREVAPREVGALLAQRFSD-----------WLGL--TVADRRLLVACAAGAGL 142 (388)
T ss_pred --CCCCHHHHHHHHHHHHhhhhcCCCcCcccHHHHHHHHHHHHHHH-----------HhCC--CHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999987 3443 67899999999999999
Q ss_pred hhhhcCCccchhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhccCCCccccCCCceEEeeccCCCCCCchhhHHH
Q 003889 242 AAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLP 321 (788)
Q Consensus 242 aaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~~~~l~~ 321 (788)
||+||||++|++|++|++.++|+.+.+++.++++.+++++.+.+ +++.+ .|.++. .++++.++++
T Consensus 143 aa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~-----------~g~~~--~f~~~~--~~~~~~~l~~ 207 (388)
T cd01033 143 AAVYNVPLAGALFALEILLRTISLRSVVAALATSAIAAAVASLL-----------KGDHP--IYDIPP--MQLSTPLLIW 207 (388)
T ss_pred HHHhCCchHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh-----------CCCCc--eeecCC--CCCCHHHHHH
Confidence 99999999999999999999999888899999998888887754 23333 455542 3345788999
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhhcccCCcceeeehhHHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCC
Q 003889 322 MAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPP 401 (788)
Q Consensus 322 ~i~lGv~~Gllg~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~~~p~~~ 401 (788)
++++|+++|++|.+|+ +.+.+..+++.+.+ +.++.+.+.+++++++.++.|+. .
T Consensus 208 ~illGi~~Gl~~~lf~---~~~~~~~~~~~~~~---~~~~~~~l~gl~~g~~~~~~p~~--------------------~ 261 (388)
T cd01033 208 ALLAGPVLGVVAAGFR---RLSQAARAKRPKGK---RILWQMPLAFLVIGLLSIFFPQI--------------------L 261 (388)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHhcccc---chHHHHHHHHHHHHHHHHHHHHH--------------------h
Confidence 9999999999999999 55555555442211 12234556677788888877765 1
Q ss_pred CCCCccccccccCCCccchhhhhhccCcHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCCcCcccchhHHHHH
Q 003889 402 GMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIG 481 (788)
Q Consensus 402 g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iG 481 (788)
| .| | +.++.++++ ..+...++.+++.|+++|++|+|+|.|||+|.|++++|
T Consensus 262 G-----------~G--~------------~~i~~~~~~----~~~~~~ll~~~~~K~~~t~lt~gsG~~GG~f~P~l~iG 312 (388)
T cd01033 262 G-----------NG--R------------ALAQLAFST----TLTLSLLLILLVLKIVATLLALRAGAYGGLLTPSLALG 312 (388)
T ss_pred C-----------Cc--H------------HHHHHHHcC----CchHHHHHHHHHHHHHHHHHHHccCCCccchHHHHHHH
Confidence 2 12 3 234444432 24455667788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCchHHHHHHhhhhhhhhhcchhHHHHHHHHHHhC-CCchHHHHHHHHHHHHHHHhhhC
Q 003889 482 STYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITN-NLKFLPLIMLVLLISKAVGDAFS 557 (788)
Q Consensus 482 a~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg-~~~~l~pi~~~~~~a~~v~~~~~ 557 (788)
|++|+++|++++...| ..++..|+++||||++++++|+|+|++++++|+|| +++.++|+|+++++|+.+++.++
T Consensus 313 a~~G~~~g~~~~~~~p--~~~~~~~a~~GmaA~laa~~~aPlt~ivl~~Eltg~~~~~l~Pl~ia~~~a~~vs~~~~ 387 (388)
T cd01033 313 ALLGALLGIVWNALLP--PLSIAAFALIGAAAFLAATQKAPLTALILVLEFTRQNPLFLIPLMLAVAGAVAVSRFIL 387 (388)
T ss_pred HHHHHHHHHHHHHhCC--cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999887653 56789999999999999999999999999999999 99999999999999999998653
No 16
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=100.00 E-value=1.7e-51 Score=458.53 Aligned_cols=383 Identities=28% Similarity=0.465 Sum_probs=310.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccCCCCHHHHHHHHcCccc
Q 003889 83 GIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGVDI 162 (788)
Q Consensus 83 Gv~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~g~~~ 162 (788)
|+++|+++.+|+..+++.++++++...+.. .....+++++...+++++++++++..+..| +.|+|+|+++..+++.
T Consensus 1 Gi~~Gl~~~lf~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~v~l~~~~~~~-~~g~G~~~v~~~~~~~-- 76 (383)
T cd00400 1 GVLSGLGAVLFRLLIELLQNLLFGGLPGEL-AAGSLSPLYILLVPVIGGLLVGLLVRLLGP-ARGHGIPEVIEAIALG-- 76 (383)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcccccc-ccccccHHHHHHHHHHHHHHHHHHHHHhCc-ccCCChHHHHHHHHhC--
Confidence 688999999999999999998876532111 001223444555666777777777777666 8999999999988753
Q ss_pred ccchhhHHHHHHHHHHHHHhccCCcccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhHHHHhhhhhhh
Q 003889 163 HGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGCAAGVA 242 (788)
Q Consensus 163 ~~~l~~~~l~~K~~~~~lsv~sG~svG~EGP~vhiGa~igs~l~~~~~~~~~l~~~~~~~f~~~~~~r~li~~GaaAGva 242 (788)
++.+++++++.|++++++++++|+|+|+|||++|+|+++|+++++ +++. ++.++|.+++||+|||++
T Consensus 77 ~~~~~~~~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~~g~~~~~-----------~~~~--~~~~~~~l~~~G~aagla 143 (383)
T cd00400 77 GGRLPLRVALVKFLASALTLGSGGSVGREGPIVQIGAAIGSWLGR-----------RLRL--SRNDRRILVACGAAAGIA 143 (383)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHH-----------HhCC--CHHHHHHHHHHHHHHHHH
Confidence 345679999999999999999999999999999999999999987 3332 567899999999999999
Q ss_pred hhhcCCccchhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhccCCCccccCCCceEEeeccCCCCCCchhhHHHH
Q 003889 243 AAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLPM 322 (788)
Q Consensus 243 aaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~~~~l~~~ 322 (788)
|+||||++|++|++|++.++++.+.+++.++++.+++++.+.+. +..+ .|+++ ...+++..+++++
T Consensus 144 a~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~a~~v~~~~~-----------~~~~--~~~~~-~~~~~~~~~~~~~ 209 (383)
T cd00400 144 AAFNAPLAGALFAIEVLLGEYSVASLIPVLLASVAAALVSRLLF-----------GAEP--AFGVP-LYDPLSLLELPLY 209 (383)
T ss_pred HhcCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-----------CCCC--eeeCC-CCCcCCHHHHHHH
Confidence 99999999999999999999988889999999988888887542 2222 34444 2467889999999
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhhhcccCCcceeeehhHHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCCC
Q 003889 323 AVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPPG 402 (788)
Q Consensus 323 i~lGv~~Gllg~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~~~p~~~g 402 (788)
+++|+++|++|.+|+ +.+.++.+++.+. ++++.+.+.+.+++++++.++.|+.. |
T Consensus 210 il~Gv~~g~~g~~f~---~~~~~~~~~~~~~--~~~~~~~~~i~gll~~~~~~~~p~~~--------------------g 264 (383)
T cd00400 210 LLLGLLAGLVGVLFV---RLLYKIERLFRRL--PIPPWLRPALGGLLLGLLGLFLPQVL--------------------G 264 (383)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHhcc--CCcHHHHHHHHHHHHHHHHHHHHHHH--------------------c
Confidence 999999999999999 6665655554322 23355667788888888888888761 2
Q ss_pred CCCccccccccCCCccchhhhhhccCcHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCCcCcccchhHHHHHH
Q 003889 403 MYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGS 482 (788)
Q Consensus 403 ~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa 482 (788)
.| |+. +...++ ++++...++.+++.|++++++|+|+|+|||.|.|++++||
T Consensus 265 -----------~G--~~~------------~~~~~~----~~~~~~~l~~~~~~K~~~t~l~~~sG~~GG~~~P~l~iGa 315 (383)
T cd00400 265 -----------SG--YGA------------ILLALA----GELSLLLLLLLLLLKLLATALTLGSGFPGGVFAPSLFIGA 315 (383)
T ss_pred -----------Cc--HHH------------HHHHHc----CChhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHH
Confidence 12 222 222222 3455666777889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCchHHHHHHhhhhhhhhhcchhHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 003889 483 TYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISK 550 (788)
Q Consensus 483 ~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg~~~~l~pi~~~~~~a~ 550 (788)
++|+++|++++.++|....+|..|+++||+|++++++|+|++++++++|+||+++.++|+|+++++||
T Consensus 316 ~~G~~~~~~~~~~~~~~~~~~~~~~~~G~aa~la~~~~aPlt~~vl~~Eltg~~~~l~p~~ia~~ia~ 383 (383)
T cd00400 316 ALGAAFGLLLPALFPGLVASPGAYALVGMAALLAAVLRAPLTAILLVLELTGDYSLLLPLMLAVVIAY 383 (383)
T ss_pred HHHHHHHHHHHHhCCcccCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHhCChhhHHHHHHHHHhcC
Confidence 99999999999877666789999999999999999999999999999999999999999999998874
No 17
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=1.6e-48 Score=432.22 Aligned_cols=375 Identities=20% Similarity=0.298 Sum_probs=285.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccCCCCHHHHHHHHc
Q 003889 79 ALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGYLN 158 (788)
Q Consensus 79 ~~liGv~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~ 158 (788)
++++|+++|+++.+|+..+++++++++.. +|+. ..++ +.+++.+++.+++.|. .|+|++|+++.++
T Consensus 2 a~~iGii~G~~~~~f~~~i~~~~~~~~~~-----------~~~~-~~~p-~~g~~i~~l~~~~~~~-~~~g~~~v~~~~~ 67 (378)
T cd03682 2 ALLIGLLVGSASALFLWSLDWATEFREAH-----------PWLL-PFLP-LAGLLIGYLYQKFGKN-SEKGNNLIIEEIH 67 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hHHH-HHHH-HHHHHHHHHHHHhCcc-cCCChHHHHHHHH
Confidence 67999999999999999999998876531 1221 1223 3345556677777665 5789999988877
Q ss_pred CcccccchhhHHHHHHHHHHHHHhccCCcccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhHHHHhhh
Q 003889 159 GVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGCA 238 (788)
Q Consensus 159 g~~~~~~l~~~~l~~K~~~~~lsv~sG~svG~EGP~vhiGa~igs~l~~~~~~~~~l~~~~~~~f~~~~~~r~li~~Gaa 238 (788)
+. .+.+++|..+.|++++.+++++|+|+|||||++|+|+++|+++++ ++|. +++++|++++||+|
T Consensus 68 ~~--~~~~~~~~~~~k~~~~~l~l~~G~s~G~Egp~v~~ga~~~~~~~~-----------~~~~--~~~~~r~l~~~g~a 132 (378)
T cd03682 68 GP--EEGIPLRMAPLVLFGTVLTHLFGGSAGREGTAVQMGGSLADAFGR-----------VFKL--PEEDRRILLIAGIA 132 (378)
T ss_pred cc--CCCCchHHHHHHHHHHHHHHHcCCccCCcchHHHHHHHHHHHHHH-----------HhCC--CHHHHHHHHHHHHH
Confidence 52 356778999999999999999999999999999999999999997 3332 56688999999999
Q ss_pred hhhhhhhcCCccchhhhhhhhc-hhhhhhhHHHHHHHHHHHHHHHHHhhhhccCCCccccCCCceEEeeccCCCCCCchh
Q 003889 239 AGVAAAFRAPVGGVLFALEEVT-SWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFE 317 (788)
Q Consensus 239 AGvaaaF~APigGvlFalE~~~-~~~~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~~~ 317 (788)
||++|+||||++|++|++|++. +.++.+.+++.++++.+++.+.+.+. .++ ..|.++ ...+++++
T Consensus 133 Aglaa~f~aPl~g~~f~~E~~~~~~~~~~~~~~~~i~~~~a~~v~~~~~------------~~~-~~~~~~-~~~~~~~~ 198 (378)
T cd03682 133 AGFAAVFGTPLAGAIFALEVLVLGRLRYSALIPCLVAAIVADWVSHALG------------LEH-THYHIV-FIPTLDPL 198 (378)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhC------------CCC-CccccC-CCCCCCHH
Confidence 9999999999999999999985 55666667777777777776665321 111 123333 23567889
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhcccCCcceeeehhHHHHHHHHHHhcccccccCCCCCCCCCCCCCCC
Q 003889 318 ELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLDSGIEC 397 (788)
Q Consensus 318 ~l~~~i~lGv~~Gllg~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~~~ 397 (788)
++++++++|+++|++|.+|+ +.+++.++++.+.+ ..+++.+.+.+++++++.++.|.-
T Consensus 199 ~l~~~i~~Gi~~gl~g~~f~---~~~~~~~~~~~~~~--~~~~~~~~iggl~~g~~~~~~~~~----------------- 256 (378)
T cd03682 199 LFVKVILAGIIFGLAGRLFA---ELLHFLKKLLKKRI--KNPYLRPFVGGLLIILLVYLLGSR----------------- 256 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcc--CCcHHHHHHHHHHHHHHHHHhcCC-----------------
Confidence 99999999999999999999 44444444432211 223455667777777766654321
Q ss_pred CCCCCCCCccccccccCCCccchhhhhhccCcHHHHHH-HhcccCCCchhHHHHHHHHHHHHHHHHHHhcCCcCcccchh
Q 003889 398 PRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRN-LFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVP 476 (788)
Q Consensus 398 p~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~-l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P 476 (788)
+ . .|++|+.+ +. ++++ +.+. ..++.|+++|++|+|+|+|||+|+|
T Consensus 257 -~---~----------~G~g~~~i------------~~~~~~~----~~~~----~~~l~K~~~t~~s~g~G~~GG~f~P 302 (378)
T cd03682 257 -R---Y----------LGLGTPLI------------EDSFFGG----TVYP----YDWLLKLIFTVITLGAGFKGGEVTP 302 (378)
T ss_pred -c---c----------ccCCHHHH------------HHHHhcC----CchH----HHHHHHHHHHHHHHhcCCCCceech
Confidence 0 0 12334332 22 2221 1221 2357899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHhhhhhhhhhcchhHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhh
Q 003889 477 GIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAVGDAF 556 (788)
Q Consensus 477 ~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg~~~~l~pi~~~~~~a~~v~~~~ 556 (788)
++++||++|+++|+++ +.++..|+++||+|++++++|+|++++++++|+|| .+.++|+|+++++|+.+++
T Consensus 303 ~l~iGa~~G~~~~~~~-------~~~~~~~~~~Gmaa~laa~~raPlt~ivl~~Eltg-~~~~~p~~ia~~ia~~~~~-- 372 (378)
T cd03682 303 LFFIGATLGNALAPIL-------GLPVSLLAALGFVAVFAGATNTPLACIIMGIELFG-AENAPYFFIACLVAYLFSG-- 372 (378)
T ss_pred HHHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhC-ccchHHHHHHHHHHHHHhC--
Confidence 9999999999999986 45788999999999999999999999999999999 5788899999999999997
Q ss_pred CccHHH
Q 003889 557 SEGLYE 562 (788)
Q Consensus 557 ~~~iy~ 562 (788)
++++|+
T Consensus 373 ~~~iy~ 378 (378)
T cd03682 373 HTGIYG 378 (378)
T ss_pred CCCCCC
Confidence 788884
No 18
>PRK03655 putative ion channel protein; Provisional
Probab=100.00 E-value=1.5e-45 Score=409.71 Aligned_cols=383 Identities=16% Similarity=0.217 Sum_probs=277.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccCCCCHHH
Q 003889 73 VVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPE 152 (788)
Q Consensus 73 ~~~w~~~~liGv~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipe 152 (788)
++.++.++++|+++|+++++|...+++++++.|....+........+|+ ...++.+.+++++++.++ .|...|+ .|+
T Consensus 10 ~~l~~~ailvG~~aGl~a~lf~~li~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~gGllvgll~~~-~~~~~G~-~~~ 86 (414)
T PRK03655 10 LLLSLPALAIGIASSLILIVVMKIASVLQNLLWQRLPGTLGIAQDSPLW-IIGMLTLTGIAVGLVIRF-SPGHAGP-DPA 86 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccchH-HHHHHHHHHHHHHHHHHH-cCCCCCC-hHH
Confidence 4456799999999999999999999999999886432111111111222 233456777888888755 4765555 566
Q ss_pred HHHHHcCcccccchhhHHHHHHHHHHHHHhccCCcccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhH
Q 003889 153 IKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDL 232 (788)
Q Consensus 153 v~~~l~g~~~~~~l~~~~l~~K~~~~~lsv~sG~svG~EGP~vhiGa~igs~l~~~~~~~~~l~~~~~~~f~~~~~~r~l 232 (788)
++....+ .++.+.+..|++++++++++|+|+|||||++|+||+++++++| +++ +..++|++
T Consensus 87 ~~~~~~~-----~~~~~~~~~~~~~~~l~l~~G~S~GrEGP~VqiGa~igs~~~r-----------~~~---~~~~~~~l 147 (414)
T PRK03655 87 TEPLIGA-----PVPPSALPGLLLALILGLAGGVSLGPEHPIMTVNIALAVAIGA-----------RLL---PRVNRMDW 147 (414)
T ss_pred HHHHhcC-----CCCccHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHH-----------Hhc---cCCChhHH
Confidence 6666432 4567889999999999999999999999999999999999997 221 23567788
Q ss_pred HHHhhhhhhhhhhcCCccchhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhccCCCccccCCCceEEeeccCCCC
Q 003889 233 VTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQE 312 (788)
Q Consensus 233 i~~GaaAGvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~ 312 (788)
+.||+|||+||+||||++|++|++||+.+.+.... |...+.+++++.+....... .+ ++.+.++++ ...
T Consensus 148 ~~~gaAaGiaAaFnaPLaG~lFa~E~l~~~~~~~~-~~~~~~~v~aa~~a~~v~~~-------~~--~~~~~~~~~-~~~ 216 (414)
T PRK03655 148 TILASAGTIGALFGTPVAAALIFSQTLNGSNEVPL-WDRLFAPLMAAAAGALTTGL-------FF--HPHFSLPIA-HYG 216 (414)
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHH-------hC--CCCcceecC-CCC
Confidence 99999999999999999999999999987665422 32333333333333222211 11 122233443 234
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhcccCCcceeeehhHHHHHHHHHHhcc-cccccCCCCCCCCC
Q 003889 313 DYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGL-PLLRKCSPCPESDL 391 (788)
Q Consensus 313 ~~~~~~l~~~i~lGv~~Gllg~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~c~~~~~~~~ 391 (788)
..+..++++++++|++||++|.+|+ +...++++++.+.+.+ .+...+.+++++++.++. |..
T Consensus 217 ~~~~~~~~~~l~lgi~~gl~G~lf~---~~~~~~~~~~~~~~~p---~~~~~lgGl~vg~l~l~~~~~~----------- 279 (414)
T PRK03655 217 QMEMTDILSGAIVAAIAIAAGMVAV---WCLPRLHALMHRLKNP---VLVLGIGGFILGILGVIGGPLT----------- 279 (414)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcccc---hHHHHHHHHHHHHHHHHhCCcc-----------
Confidence 4667889999999999999999999 6666666655333323 234566667777776543 222
Q ss_pred CCCCCCCCCCCCCCccccccccCCCccchhhhhhccCcHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCCcCc
Q 003889 392 DSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPA 471 (788)
Q Consensus 392 ~~~~~~p~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~g 471 (788)
. |.||+. ++.+... +++++..++++++.|+++|++|+|+|+||
T Consensus 280 ---------~-------------g~Gy~~------------i~~~~~~---~~~~~~~ll~l~l~K~lat~ls~~sG~~G 322 (414)
T PRK03655 280 ---------L-------------FKGLDE------------MQQMAAN---QAFSASDYFLLAVVKLAALVVAAASGFRG 322 (414)
T ss_pred ---------c-------------cCCHHH------------HHHHHhc---CCccHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 1 222443 3433322 24567777888899999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHhhhhhhhhhcc----hhHHHHHHHHHHhCCCchHHHHHHHHH
Q 003889 472 GQFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMR----MTVSLCVIMVEITNNLKFLPLIMLVLL 547 (788)
Q Consensus 472 G~f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r----~pis~~vi~~E~Tg~~~~l~pi~~~~~ 547 (788)
|+|+|++++||++|..++.+++ ..++...+++||+|+++|++| .|++++||++||| +.|+|++++
T Consensus 323 GiF~PsL~iGA~~G~~~~~l~p------~~~~~~~v~~~m~a~la~vtr~p~~sp~ta~viv~em~-----~~~l~~~~~ 391 (414)
T PRK03655 323 GRIFPAVFVGVALGLMLHAHVP------AVPAAITVSCAILGIVLVVTRDGWLSLFMAAVVVPDTT-----LLPLLCIVM 391 (414)
T ss_pred ceehHHHHHHHHHHHHHHHhcc------CCChHHHHHHHHHHHHHHHhccchhhHHHHHHHHhcch-----HHHHHHHHH
Confidence 9999999999999999998753 467888999999999999999 5999999999999 677787777
Q ss_pred HHHHHH
Q 003889 548 ISKAVG 553 (788)
Q Consensus 548 ~a~~v~ 553 (788)
++-|+-
T Consensus 392 ~~~~~~ 397 (414)
T PRK03655 392 LPAWLL 397 (414)
T ss_pred HHHHHH
Confidence 777665
No 19
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.72 E-value=1.2e-16 Score=161.28 Aligned_cols=133 Identities=17% Similarity=0.326 Sum_probs=110.6
Q ss_pred hcccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCC
Q 003889 581 MRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDT 660 (788)
Q Consensus 581 l~~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~ 660 (788)
+..++..|||+++ ++++++++++.++.+.|.+++.+.+||+|+ +.+++|+|+.+|+.+.-.... |
T Consensus 242 ~~~LtcadIMSrd-Vvtv~~~ts~dhA~~ll~~H~ikaLPV~d~----~~rl~GiVt~~dl~~~a~~~p-~--------- 306 (382)
T COG3448 242 MGELTCADIMSRD-VVTVSTDTSIDHARKLLQEHRIKALPVLDE----HRRLVGIVTQRDLLKHARPSP-F--------- 306 (382)
T ss_pred hccccHHHhcCcc-ceecCCcCChHHHHHHHHHcCccccccccc----ccceeeeeeHHHHhhccCcch-H---------
Confidence 4578999999999 999999999999999999999999999999 889999999999965311100 0
Q ss_pred CCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCC
Q 003889 661 RGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRAS 740 (788)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g 740 (788)
.++. ..+..+ ++.+|++...|+.+|++..+...+|.+.|++++||+|++|
T Consensus 307 --------qrlr------~~~~~~----------------vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g 356 (382)
T COG3448 307 --------QRLR------FLRPPT----------------VKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAG 356 (382)
T ss_pred --------HHhh------ccCCCc----------------ccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCC
Confidence 0110 111123 3445999999999999999999999999999999999999
Q ss_pred eEEEEEeHhhhhhhhcCC
Q 003889 741 RVIGLITRKDLLIEDGED 758 (788)
Q Consensus 741 ~lvGIITr~DLl~~~~~~ 758 (788)
+++||||..|++.+..+.
T Consensus 357 ~lvGIvsQtDliaal~r~ 374 (382)
T COG3448 357 KLVGIVSQTDLIAALYRN 374 (382)
T ss_pred cEEEEeeHHHHHHHHHHH
Confidence 999999999999887653
No 20
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.68 E-value=9.2e-16 Score=171.43 Aligned_cols=183 Identities=20% Similarity=0.195 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccCCCCHHHH
Q 003889 74 VKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEI 153 (788)
Q Consensus 74 ~~w~~~~liGv~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev 153 (788)
..|.+.+++|+++|+++.+|...+.+.++++....... ....+++. ..+.+++.+.+..+..|...|+|.+++
T Consensus 200 ~~~~~~illGii~G~~g~lF~~~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~gl~~~~~~~~~~~~~~G~G~~~i 272 (390)
T cd01034 200 EAWLLVLVCGVVGGLAGGLFARLLVALSSGLPGWVRRF---RRRRPVLF----AALCGLALALIGLVSGGLTFGTGYLQA 272 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---cchhhHHH----HHHHHHHHHHHHHhCCCccccCcHHHH
Confidence 34568999999999999999999888876543321000 01111111 112233333333344467789999999
Q ss_pred HHHHcCcccccchhhHHHHHHHHHHHHHhccCCcccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhHH
Q 003889 154 KGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLV 233 (788)
Q Consensus 154 ~~~l~g~~~~~~l~~~~l~~K~~~~~lsv~sG~svG~EGP~vhiGa~igs~l~~~~~~~~~l~~~~~~~f~~~~~~r~li 233 (788)
+..+++.. ...+..++.|++.+.+++++|.++|+|+|++++||++|+.+++ +++ ..+.+.++
T Consensus 273 ~~~~~~~~---~~~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~iGa~~G~~~~~-----------~~~----~~~~~~~a 334 (390)
T cd01034 273 RAALEGGG---GLPLWFGLLKFLATLLSYWSGIPGGLFAPSLAVGAGLGSLLAA-----------LLG----SVSQGALV 334 (390)
T ss_pred HHHHhCCC---cccHHHHHHHHHHHHHHHHcCCCcceechHHHHHHHHHHHHHH-----------Hhc----CCCchHHH
Confidence 99887632 3456778999999999999999999999999999999999987 222 24678999
Q ss_pred HHhhhhhhhhhhcCCccchhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHH
Q 003889 234 TCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRS 284 (788)
Q Consensus 234 ~~GaaAGvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~ 284 (788)
.|||||++|+++|||+++++|++|++.+ .+.+.+.++++++|..+.+.
T Consensus 335 ~~G~aA~laa~~~aPlt~~vl~~Elt~~---~~~l~p~lia~~~A~~v~~~ 382 (390)
T cd01034 335 LLGMAAFLAGVTQAPLTAFVIVMEMTGD---QQMLLPLLAAALLASGVSRL 382 (390)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhCC---hhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999974 34566667777666666654
No 21
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.67 E-value=5.3e-16 Score=172.88 Aligned_cols=183 Identities=19% Similarity=0.159 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccCCCCHHHHH
Q 003889 75 KWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIK 154 (788)
Q Consensus 75 ~w~~~~liGv~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~ 154 (788)
.+.+.+++|+++|+++.+|+..+.++++++. .... .++. ..+.+++.+.+ .++.|+..|+|.+.++
T Consensus 204 ~l~~~illGi~~Gl~~~lf~~~~~~~~~~~~--------~~~~-~~~~----~~l~gl~~g~~-~~~~p~~~G~G~~~i~ 269 (388)
T cd01033 204 LLIWALLAGPVLGVVAAGFRRLSQAARAKRP--------KGKR-ILWQ----MPLAFLVIGLL-SIFFPQILGNGRALAQ 269 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------cccc-hHHH----HHHHHHHHHHH-HHHHHHHhCCcHHHHH
Confidence 4457899999999999999999887765431 1111 1111 11233333433 4567999999999999
Q ss_pred HHHcCcccccchhhHHHHHHHHHHHHHhccCCcccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhHHH
Q 003889 155 GYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVT 234 (788)
Q Consensus 155 ~~l~g~~~~~~l~~~~l~~K~~~~~lsv~sG~svG~EGP~vhiGa~igs~l~~~~~~~~~l~~~~~~~f~~~~~~r~li~ 234 (788)
..+++......+ ...++.|++.+.+++++|.++|.|+|++.+||++|+.+++. ++.+-++.+.+.++.
T Consensus 270 ~~~~~~~~~~~l-l~~~~~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~-----------~~~~~p~~~~~~~a~ 337 (388)
T cd01033 270 LAFSTTLTLSLL-LILLVLKIVATLLALRAGAYGGLLTPSLALGALLGALLGIV-----------WNALLPPLSIAAFAL 337 (388)
T ss_pred HHHcCCchHHHH-HHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHHH-----------HHHhCCcccHHHHHH
Confidence 888864322222 66789999999999999999999999999999999999972 221113445678999
Q ss_pred HhhhhhhhhhhcCCccchhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHHh
Q 003889 235 CGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSA 285 (788)
Q Consensus 235 ~GaaAGvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~ 285 (788)
|||||++|+++|||+++++|++|++.. +.+.+.+.++++++|+.+.+.+
T Consensus 338 ~GmaA~laa~~~aPlt~ivl~~Eltg~--~~~~l~Pl~ia~~~a~~vs~~~ 386 (388)
T cd01033 338 IGAAAFLAATQKAPLTALILVLEFTRQ--NPLFLIPLMLAVAGAVAVSRFI 386 (388)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999762 2566778888888888877653
No 22
>PRK05277 chloride channel protein; Provisional
Probab=99.62 E-value=4.8e-15 Score=168.20 Aligned_cols=189 Identities=20% Similarity=0.238 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccCCCCHHHH
Q 003889 74 VKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEI 153 (788)
Q Consensus 74 ~~w~~~~liGv~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev 153 (788)
..+...+++|+++|+++.+|...+..++++..+. .......++ ....+.+++.+.+ .++.|+..|+|.+.+
T Consensus 215 ~~l~~~i~lGi~~G~~g~lf~~~~~~~~~~~~~~-----~~~~~~~~~---~~~~i~gl~~g~l-~~~~p~~~g~G~~~i 285 (438)
T PRK05277 215 NTLWLFLLLGIIFGIFGVLFNKLLLRTQDLFDRL-----HGGNKKRWV---LMGGAVGGLCGLL-GLLAPAAVGGGFNLI 285 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cccccHHHH---HHHHHHHHHHHHH-HHHhhhhcCChHHHH
Confidence 3455789999999999999999988877653221 111111111 1222334444444 456799999999999
Q ss_pred HHHHcCcccccchhhHHHHHHHHHHHHHhccCCcccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhHH
Q 003889 154 KGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLV 233 (788)
Q Consensus 154 ~~~l~g~~~~~~l~~~~l~~K~~~~~lsv~sG~svG~EGP~vhiGa~igs~l~~~~~~~~~l~~~~~~~f~~~~~~r~li 233 (788)
+..+++. .+-..-+..++.|++.+.+++++|.++|.|+|++++||++|..+++..+. +++. .+.+...++
T Consensus 286 ~~~~~~~-~~~~~l~~~~~~K~i~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~-------~~p~--~~~~~~~~a 355 (438)
T PRK05277 286 PIALAGN-FSIGMLLFIFVARFITTLLCFGSGAPGGIFAPMLALGTLLGLAFGMVAAA-------LFPQ--YHIEPGTFA 355 (438)
T ss_pred HHHHcCC-chHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-------HcCc--ccccHHHHH
Confidence 9988862 22122244679999999999999999999999999999999998862111 1211 244677899
Q ss_pred HHhhhhhhhhhhcCCccchhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHH
Q 003889 234 TCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRS 284 (788)
Q Consensus 234 ~~GaaAGvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~ 284 (788)
.+||||++|+++|||+++++|++|++.+ ...+.+.++++++|..+.+.
T Consensus 356 ~~G~aA~la~~~~aPlt~~v~~~Eltg~---~~~l~p~lia~~~A~~v~~~ 403 (438)
T PRK05277 356 IAGMGALFAATVRAPLTGIVLVLEMTDN---YQLILPLIITCLGATLLAQF 403 (438)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhCC---hhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998864 34556667777777666653
No 23
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.59 E-value=7.6e-15 Score=146.34 Aligned_cols=123 Identities=14% Similarity=0.300 Sum_probs=110.6
Q ss_pred hcccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCC
Q 003889 581 MRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDT 660 (788)
Q Consensus 581 l~~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~ 660 (788)
..+.+++++|+++ ++++++++|++++...+.+++.++.||+|+ ++++|+++.+|+..++.+..
T Consensus 169 iPk~~V~~~~s~~-~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-----dk~vGiit~~dI~~aia~g~----------- 231 (294)
T COG2524 169 IPKEKVKNLMSKK-LITVRPDDTLREAAKLFYEKGIRGAPVVDD-----DKIVGIITLSDIAKAIANGN----------- 231 (294)
T ss_pred cCcchhhhhccCC-ceEecCCccHHHHHHHHHHcCccCCceecC-----CceEEEEEHHHHHHHHHcCC-----------
Confidence 3467899999999 999999999999999999999999999998 59999999999988876533
Q ss_pred CCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCC
Q 003889 661 RGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRAS 740 (788)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g 740 (788)
....+++||.++++++++|+.+.+|.++|..+++..|.|+|.+|
T Consensus 232 ------------------------------------~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~g 275 (294)
T COG2524 232 ------------------------------------LDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNG 275 (294)
T ss_pred ------------------------------------ccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCC
Confidence 12335566999999999999999999999999999999999889
Q ss_pred eEEEEEeHhhhhhhhc
Q 003889 741 RVIGLITRKDLLIEDG 756 (788)
Q Consensus 741 ~lvGIITr~DLl~~~~ 756 (788)
+.+|||||+|+++...
T Consensus 276 kpvGiITrTDIL~~ia 291 (294)
T COG2524 276 KPVGIITRTDILTRIA 291 (294)
T ss_pred cEEEEEehHHHHHHhh
Confidence 9999999999998764
No 24
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.56 E-value=4.2e-14 Score=154.72 Aligned_cols=147 Identities=12% Similarity=0.191 Sum_probs=120.8
Q ss_pred CccHHHHHHHHcCCCC---CCCCchhhh---cccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCC
Q 003889 557 SEGLYEEQAHLRGVPL---LESRPKYKM---RQMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNG 628 (788)
Q Consensus 557 ~~~iy~~~l~~kg~p~---l~~~~~~~l---~~l~v~diM~~--~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~ 628 (788)
..++|...+..+|.-. ...+....+ ..++++|+|++ + ++++++++++.++.+.|.+++++.+||+|+
T Consensus 169 ~dsL~~~~l~~~g~~~~~~~~~~~~~~l~~~~~~~V~dim~~~~~-~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~---- 243 (326)
T PRK10892 169 GDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVSDIMHTGDE-IPHVSKTASLRDALLEITRKNLGMTVICDD---- 243 (326)
T ss_pred HHHHHHHHHHHhCCCHHHHHhcCCCchhcccccCcHHHHhCCCCC-CeEECCCCCHHHHHHHHHhcCCCeEEEEcC----
Confidence 5678888888887765 555555556 78999999997 7 999999999999999999888877888887
Q ss_pred CcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCC
Q 003889 629 ERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPS 708 (788)
Q Consensus 629 ~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~ 708 (788)
+++++|+|+.+|+.+.+.... . . ...+++++|.++
T Consensus 244 ~g~lvGivt~~Dl~~~~~~~~----------~-------------------~----------------~~~~v~~im~~~ 278 (326)
T PRK10892 244 NMKIEGIFTDGDLRRVFDMGI----------D-------------------L----------------RQASIADVMTPG 278 (326)
T ss_pred CCcEEEEEecHHHHHHHhcCC----------C-------------------c----------------ccCCHHHhcCCC
Confidence 789999999999977543221 0 0 012244559999
Q ss_pred CceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhh
Q 003889 709 PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (788)
Q Consensus 709 p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (788)
+.++.+++++.+++++|.+++.+++||+|+ ++++|+||++|++++
T Consensus 279 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~-~~lvGiit~~dil~~ 323 (326)
T PRK10892 279 GIRVRPGILAVDALNLMQSRHITSVLVADG-DHLLGVLHMHDLLRA 323 (326)
T ss_pred CEEECCCCCHHHHHHHHHHCCCcEEEEeeC-CEEEEEEEhHHhHhc
Confidence 999999999999999999999999999985 899999999999875
No 25
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.55 E-value=5.7e-14 Score=153.40 Aligned_cols=148 Identities=13% Similarity=0.095 Sum_probs=122.8
Q ss_pred CccHHHHHHHHcCCCC---CCCCchhhhc---ccchhhhccCC-ceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCC
Q 003889 557 SEGLYEEQAHLRGVPL---LESRPKYKMR---QMTAKEACGAQ-KVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGE 629 (788)
Q Consensus 557 ~~~iy~~~l~~kg~p~---l~~~~~~~l~---~l~v~diM~~~-~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~ 629 (788)
..++|...+..+|... ...++...++ ..+|+|+|.++ .++++++++++.++.+.|.+++...+||+|+ +
T Consensus 164 ~dsL~~~~l~~~g~~~~~~~~~~~~~~l~~~~~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~----~ 239 (321)
T PRK11543 164 GDALAMAVMQARGFNEEDFARSHPAGALGARLLNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDA----Q 239 (321)
T ss_pred HHHHHHHHHHHcCCCHHHhccCCCCCHHHHHHHhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC----C
Confidence 4578888888887655 5566666788 88999999873 2788999999999999999888899999998 7
Q ss_pred cEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCC
Q 003889 630 RLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSP 709 (788)
Q Consensus 630 ~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p 709 (788)
++++|+|+.+|+.+.+.... .. ..++.++|++++
T Consensus 240 g~~iG~vt~~dl~~~~~~~~------------------------------~~----------------~~~v~~im~~~~ 273 (321)
T PRK11543 240 QQVQGVFTDGDLRRWLVGGG------------------------------AL----------------TTPVNEAMTRGG 273 (321)
T ss_pred CcEEEEecHHHHHHHHhCCC------------------------------Cc----------------CCcHHHhcCCCC
Confidence 89999999999987543211 00 012344599999
Q ss_pred ceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhh
Q 003889 710 YVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (788)
Q Consensus 710 ~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (788)
.++.+++++.++++.|.+.+.+++||+|++|+++|+||++|++++
T Consensus 274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 274 TTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 999999999999999999999999999988999999999999865
No 26
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=99.54 E-value=4e-14 Score=158.30 Aligned_cols=178 Identities=21% Similarity=0.228 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccCCCCHHH
Q 003889 73 VVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPE 152 (788)
Q Consensus 73 ~~~w~~~~liGv~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipe 152 (788)
...+...+++|+++|+++.+|+....++++++... . .++.+. .++.+++.+.+ .++.|+..|+|.++
T Consensus 203 ~~~~~~~il~Gv~~g~~g~~f~~~~~~~~~~~~~~-----~----~~~~~~---~~i~gll~~~~-~~~~p~~~g~G~~~ 269 (383)
T cd00400 203 LLELPLYLLLGLLAGLVGVLFVRLLYKIERLFRRL-----P----IPPWLR---PALGGLLLGLL-GLFLPQVLGSGYGA 269 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----C----CcHHHH---HHHHHHHHHHH-HHHHHHHHcCcHHH
Confidence 44556889999999999999999998887654321 0 111111 22334444443 55679999999999
Q ss_pred HHHHHcCcccccchhhHHHHHHHHHHHHHhccCCcccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhH
Q 003889 153 IKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDL 232 (788)
Q Consensus 153 v~~~l~g~~~~~~l~~~~l~~K~~~~~lsv~sG~svG~EGP~vhiGa~igs~l~~~~~~~~~l~~~~~~~f~~~~~~r~l 232 (788)
+....++.. +-..-...++.|++.+.+++++|.+.|.|+|++.+||++|..+++. ++. +++ .++.+.+.+
T Consensus 270 ~~~~~~~~~-~~~~l~~~~~~K~~~t~l~~~sG~~GG~~~P~l~iGa~~G~~~~~~----~~~---~~~--~~~~~~~~~ 339 (383)
T cd00400 270 ILLALAGEL-SLLLLLLLLLLKLLATALTLGSGFPGGVFAPSLFIGAALGAAFGLL----LPA---LFP--GLVASPGAY 339 (383)
T ss_pred HHHHHcCCh-hHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHH----HHH---hCC--cccCChHHH
Confidence 988877522 1112245789999999999999999999999999999999999973 111 111 134578899
Q ss_pred HHHhhhhhhhhhhcCCccchhhhhhhhchhhhhhhHHHHHHHHH
Q 003889 233 VTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSA 276 (788)
Q Consensus 233 i~~GaaAGvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~ 276 (788)
+.|||+|++++++|+|+++++|++|++.+ .+.+.+.++++.
T Consensus 340 ~~~G~aa~la~~~~aPlt~~vl~~Eltg~---~~~l~p~~ia~~ 380 (383)
T cd00400 340 ALVGMAALLAAVLRAPLTAILLVLELTGD---YSLLLPLMLAVV 380 (383)
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHhCC---hhhHHHHHHHHH
Confidence 99999999999999999999999999874 334444444433
No 27
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.53 E-value=1.4e-14 Score=150.13 Aligned_cols=174 Identities=19% Similarity=0.279 Sum_probs=137.0
Q ss_pred hhhhhhhhhcchhHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhCccHHHHHHHHcCCCCCCCCchhhhcccchhhh
Q 003889 510 GAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAVGDAFSEGLYEEQAHLRGVPLLESRPKYKMRQMTAKEA 589 (788)
Q Consensus 510 Gaaa~l~g~~r~pis~~vi~~E~Tg~~~~l~pi~~~~~~a~~v~~~~~~~iy~~~l~~kg~p~l~~~~~~~l~~l~v~di 589 (788)
|+|-..+|.+...=. +.++.++ .-+|++-+.-=.+.|+..+|+.+|+++++.. -++|+|+
T Consensus 134 ~~AVLvTGGF~~s~e----vi~lAne--~~lPvlstsYDTFTVAtmIN~Al~n~lIKkd--------------I~~Vedi 193 (432)
T COG4109 134 GNAVLVTGGFDVSDE----VIKLANE--KGLPVLSTSYDTFTVATMINKALSNQLIKKD--------------IITVEDI 193 (432)
T ss_pred CCeEEEeCCCCccHH----HHHhhcc--cCCceEEecccceeHHHHHHHHHHHhhhhhh--------------eeeHHHh
Confidence 455555555543221 1233332 3456666666667788888999999988642 4689999
Q ss_pred ccC--CceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCcc
Q 003889 590 CGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPI 667 (788)
Q Consensus 590 M~~--~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~ 667 (788)
|.+ + ..++++++++++..++-++++|+.|||+|+ ..+++|+|+.+|+... +.
T Consensus 194 ~~P~~~-~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~----~~kvvGvVt~rDv~~~---~~------------------ 247 (432)
T COG4109 194 MTPLED-TSYLRETDTVEDWLDLVEKTGHSRFPVVNR----SMKVVGVVTMRDVLDK---KP------------------ 247 (432)
T ss_pred cccccc-ceeccccccHHHHHHHHHHcCCCccceecc----cceEEEEEEehhhhcC---CC------------------
Confidence 994 6 888999999999999999999999999999 8999999999998431 11
Q ss_pred ccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEe
Q 003889 668 SHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLIT 747 (788)
Q Consensus 668 ~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIIT 747 (788)
..+++ .+|+++|++|.+.+++..+.++|.-.++..+||+|++++++||||
T Consensus 248 --------------~t~ie----------------KVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiit 297 (432)
T COG4109 248 --------------STTIE----------------KVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIIT 297 (432)
T ss_pred --------------CccHH----------------HHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEE
Confidence 11333 349999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhcCCC
Q 003889 748 RKDLLIEDGEDS 759 (788)
Q Consensus 748 r~DLl~~~~~~~ 759 (788)
|+|+++..+...
T Consensus 298 R~dvlk~lq~~q 309 (432)
T COG4109 298 RQDVLKSLQMIQ 309 (432)
T ss_pred HHHHHHHHHHhc
Confidence 999999876433
No 28
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.52 E-value=7.2e-14 Score=164.15 Aligned_cols=182 Identities=19% Similarity=0.223 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccCCCCHHHHHH
Q 003889 76 WFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKG 155 (788)
Q Consensus 76 w~~~~liGv~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~ 155 (788)
+.+.+++|+++|+++.+|...+.+.++++... . .+.++.. .+.+++.+.+ .++.|+..|+|.+.++.
T Consensus 239 ~~~~~~lGv~~G~~~~~f~~~~~~~~~~~~~~--------~-~~~~~~~---~~~gl~~g~l-~~~~p~~~g~G~~~i~~ 305 (574)
T PRK01862 239 VLLFVALGVLCGAAAPQFLRLLDASKNQFKRL--------P-VPLPVRL---ALGGLLVGVI-SVWVPEVWGNGYSVVNT 305 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------C-CchhHHH---HHHHHHHHHH-HHHHHHHhcCCHHHHHH
Confidence 44779999999999999999887775532111 1 1111111 2333444443 44579999999999998
Q ss_pred HHcCcccccchhhHHHHHHHHHHHHHhccCCcccccchHHHHHHHHHHHhhccCccccccccccccccCCh-hhhhhHHH
Q 003889 156 YLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSD-RDRRDLVT 234 (788)
Q Consensus 156 ~l~g~~~~~~l~~~~l~~K~~~~~lsv~sG~svG~EGP~vhiGa~igs~l~~~~~~~~~l~~~~~~~f~~~-~~~r~li~ 234 (788)
.+++... -..-...++.|++.+.+++++|.++|.++|++.+||++|+.+++. ++. ++.+. .+.-.++.
T Consensus 306 ~~~~~~~-~~~l~~~~~~K~~~t~~t~g~G~~GG~f~P~l~iGa~~G~~~g~~----~~~------~~~~~~~~~~~~a~ 374 (574)
T PRK01862 306 ILHAPWT-WQALVAVLVAKLIATAATAGSGAVGGVFTPTLFVGAVVGSLFGLA----MHA------LWPGHTSAPFAYAM 374 (574)
T ss_pred HHcCCch-HHHHHHHHHHHHHHHHHHHccCCCccchhhHHHHHHHHHHHHHHH----HHH------hCCCcccchHHHHH
Confidence 8876221 111134568999999999999999999999999999999999972 111 11111 22344889
Q ss_pred HhhhhhhhhhhcCCccchhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHH
Q 003889 235 CGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRS 284 (788)
Q Consensus 235 ~GaaAGvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~ 284 (788)
+||||.+|+++|||+++++|++|++.+ ...+.+.++++++|.++.+.
T Consensus 375 vGmaa~~aa~~~aPlt~i~l~~Elt~~---~~~~~P~~ia~~~a~~v~~~ 421 (574)
T PRK01862 375 VGMGAFLAGATQAPLMAILMIFEMTLS---YQVVLPLMVSCVVAYFTARA 421 (574)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHhCC---HhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999855 45667777777777776653
No 29
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.52 E-value=1.4e-13 Score=154.78 Aligned_cols=184 Identities=21% Similarity=0.239 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccCCCCHHHH
Q 003889 74 VKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEI 153 (788)
Q Consensus 74 ~~w~~~~liGv~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev 153 (788)
..+.+.+++|+++|+++.+|...+.+.+++.... ...+++. ..+.+++.+.+.. +.|+..|.|.+.+
T Consensus 219 ~~l~~~i~lGii~Gl~g~~f~~~~~~~~~~~~~~--------~~~~~~~----~~lggli~g~l~~-~~p~~~G~G~~~i 285 (418)
T PRK01610 219 RDYALIISTGLLAGLCGPLLLTLMNASHRGFVSL--------KLAPPWQ----LALGGLIVGLLSL-FTPAVWGNGYSVV 285 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--------ccchhHH----HHHHHHHHHHHHH-HhhHHhCCcHHHH
Confidence 3455789999999999999999887765443211 1111211 1234445555544 3499999999999
Q ss_pred HHHHcCcccccchhhHHHHHHHHHHHHHhccCCcccccchHHHHHHHHHHHhhccCccccccccccccccCChhh-hhhH
Q 003889 154 KGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRD-RRDL 232 (788)
Q Consensus 154 ~~~l~g~~~~~~l~~~~l~~K~~~~~lsv~sG~svG~EGP~vhiGa~igs~l~~~~~~~~~l~~~~~~~f~~~~~-~r~l 232 (788)
+..+++.. .-.+-.-.++.|++.+.+++++|.++|.++|++.+||++|+.+++.. +. .+.+..+ .-.+
T Consensus 286 ~~~~~~~~-~~~~l~~l~l~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~----~~------~~~~~~~~~~~~ 354 (418)
T PRK01610 286 QSFLTAPP-LLMLIAGIFLCKLLAVLASSGSGAPGGVFTPTLFVGLAIGMLYGRSL----GL------WLPDGEEITLLL 354 (418)
T ss_pred HHHHcCCh-hHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHH----HH------hCCCcccchHHH
Confidence 98887521 11111223689999999999999999999999999999999999731 10 1112222 3456
Q ss_pred HHHhhhhhhhhhhcCCccchhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHH
Q 003889 233 VTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRS 284 (788)
Q Consensus 233 i~~GaaAGvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~ 284 (788)
..+||||.+|+++|||++++++++|++.++ ....+.++++++|+++.+.
T Consensus 355 a~vGmaA~laa~~~aPltaivl~~Eltg~~---~~~~p~~ia~~ia~~vs~~ 403 (418)
T PRK01610 355 GLTGMATLLAATTHAPIMSTLMICEMTGEY---QLLPGLLIACVIASVISRT 403 (418)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHhCCH---hHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999998752 3455667777777777654
No 30
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.45 E-value=1.1e-12 Score=146.07 Aligned_cols=171 Identities=18% Similarity=0.226 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhcc-ccccCCCCHHH
Q 003889 74 VKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKF-APAAAGSGIPE 152 (788)
Q Consensus 74 ~~w~~~~liGv~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~p~a~GsGipe 152 (788)
..+.+.+++|+++|+++.+|+..+.++++++... ....|+. +++.+++.+.+.... .|...|.|.+.
T Consensus 198 ~~l~~~i~~Gi~~gl~g~~f~~~~~~~~~~~~~~--------~~~~~~~----~~iggl~~g~~~~~~~~~~~~G~g~~~ 265 (378)
T cd03682 198 LLFVKVILAGIIFGLAGRLFAELLHFLKKLLKKR--------IKNPYLR----PFVGGLLIILLVYLLGSRRYLGLGTPL 265 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------cCCcHHH----HHHHHHHHHHHHHHhcCCccccCCHHH
Confidence 3445789999999999999999998887664321 1111221 123334444443322 34567999888
Q ss_pred HHH-HHcCcccccchhhHHHHHHHHHHHHHhccCCcccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhh
Q 003889 153 IKG-YLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRD 231 (788)
Q Consensus 153 v~~-~l~g~~~~~~l~~~~l~~K~~~~~lsv~sG~svG~EGP~vhiGa~igs~l~~~~~~~~~l~~~~~~~f~~~~~~r~ 231 (788)
++. ..++ ..+...++.|++.+.+++++|.++|.+.|++.+||++|+.+++ +++. +...
T Consensus 266 i~~~~~~~-----~~~~~~~l~K~~~t~~s~g~G~~GG~f~P~l~iGa~~G~~~~~-----------~~~~-----~~~~ 324 (378)
T cd03682 266 IEDSFFGG-----TVYPYDWLLKLIFTVITLGAGFKGGEVTPLFFIGATLGNALAP-----------ILGL-----PVSL 324 (378)
T ss_pred HHHHHhcC-----CchHHHHHHHHHHHHHHHhcCCCCceechHHHHHHHHHHHHHH-----------HHCC-----CHHH
Confidence 877 4432 2346678999999999999999999999999999999999997 2221 2357
Q ss_pred HHHHhhhhhhhhhhcCCccchhhhhhhhchhhhhhhHHHHHHHHHHHHHH
Q 003889 232 LVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVV 281 (788)
Q Consensus 232 li~~GaaAGvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v 281 (788)
++.|||||.+++++|||++++++++|++.. ....+.++++.+|+++
T Consensus 325 ~~~~Gmaa~laa~~raPlt~ivl~~Eltg~----~~~~p~~ia~~ia~~~ 370 (378)
T cd03682 325 LAALGFVAVFAGATNTPLACIIMGIELFGA----ENAPYFFIACLVAYLF 370 (378)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHhCc----cchHHHHHHHHHHHHH
Confidence 899999999999999999999999999873 2334555555555444
No 31
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.45 E-value=5e-13 Score=123.92 Aligned_cols=123 Identities=24% Similarity=0.364 Sum_probs=103.5
Q ss_pred cccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCC
Q 003889 582 RQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTR 661 (788)
Q Consensus 582 ~~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~ 661 (788)
..++++++|++| ++.+++++++.+++++|++++++.+||+++ ++++|-|+.+++.+.+..+. +
T Consensus 63 ~~ita~~iM~sp-vv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-----~k~VGsItE~~iv~~~le~~----e------- 125 (187)
T COG3620 63 TRITAKTIMHSP-VVSVSPDDSISDVVNLMRDKGISQLPVIEE-----DKVVGSITENDIVRALLEGM----E------- 125 (187)
T ss_pred ceEeHhhhccCC-eeEECchhhHHHHHHHHHHcCCccCceeeC-----CeeeeeecHHHHHHHHhccc----c-------
Confidence 468999999999 999999999999999999999999999987 89999999999988764431 0
Q ss_pred CCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCe
Q 003889 662 GGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASR 741 (788)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~ 741 (788)
.+. ...++++|..+..+|++++++..+.+++..+. .+.|++ +|+
T Consensus 126 ----------------------~i~-----------~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~~--AVlV~e-~G~ 169 (187)
T COG3620 126 ----------------------SIR-----------SLRVREVMGEPFPTVSPDESLNVISQLLEEHP--AVLVVE-NGK 169 (187)
T ss_pred ----------------------chh-----------hhhHHHHhcCCCCcCCCCCCHHHHHHHHhhCC--eEEEEe-CCc
Confidence 111 23355569999999999999999999988765 477885 499
Q ss_pred EEEEEeHhhhhhhhcC
Q 003889 742 VIGLITRKDLLIEDGE 757 (788)
Q Consensus 742 lvGIITr~DLl~~~~~ 757 (788)
++||||+.|+++...+
T Consensus 170 ~vGIITk~DI~k~~~~ 185 (187)
T COG3620 170 VVGIITKADIMKLLAG 185 (187)
T ss_pred eEEEEeHHHHHHHHhc
Confidence 9999999999987653
No 32
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=99.44 E-value=7.3e-13 Score=148.93 Aligned_cols=187 Identities=21% Similarity=0.208 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccCCCCHHH
Q 003889 73 VVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPE 152 (788)
Q Consensus 73 ~~~w~~~~liGv~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipe 152 (788)
...+.+.+++|+++|+++.+|...+.++++++.+.. .. ..++. .. +.+++.+.+. ++.|+..|+|-+.
T Consensus 204 ~~~l~~~illGv~~G~~g~~f~~~~~~~~~~~~~~~----~~---~~~~~-~~---l~gl~~~~~~-~~~p~~~g~G~~~ 271 (402)
T cd01031 204 LKSYWLLLLLGIIAGLLGYLFNRSLLKSQDLYRKLK----KL---PRELR-VL---LPGLLIGPLG-LLLPEALGGGHGL 271 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cC---ChhHH-HH---HHHHHHHHHH-HHHHHHhCCHHHH
Confidence 334557899999999999999998888766543210 01 11111 11 2233334333 3479999999877
Q ss_pred HHHHHcCcccccchhhHHHHHHHHHHHHHhccCCcccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhH
Q 003889 153 IKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDL 232 (788)
Q Consensus 153 v~~~l~g~~~~~~l~~~~l~~K~~~~~lsv~sG~svG~EGP~vhiGa~igs~l~~~~~~~~~l~~~~~~~f~~~~~~r~l 232 (788)
++...++. .+-..-...++.|++.+.+++++|.+.|.+.|++.+||++|..+++.... +++ .+..+...+
T Consensus 272 i~~~~~~~-~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~g~~~~~-------~~~--~~~~~~~~~ 341 (402)
T cd01031 272 ILSLAGGN-FSISLLLLIFVLRFIFTMLSYGSGAPGGIFAPMLALGALLGLLFGTILVQ-------LGP--IPISAPATF 341 (402)
T ss_pred HHHHHcCC-chHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHH-------hcC--cccccHHHH
Confidence 88777652 22112234568999999999999999999999999999999999873211 111 134577899
Q ss_pred HHHhhhhhhhhhhcCCccchhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHH
Q 003889 233 VTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRS 284 (788)
Q Consensus 233 i~~GaaAGvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~ 284 (788)
+.+||||.+++++|+|++++++++|++.+ .+.+.+.++++++|..+.+.
T Consensus 342 a~~G~aa~~a~~~~aPlta~vl~~Eltg~---~~~l~p~~ia~~ia~~v~~~ 390 (402)
T cd01031 342 AIAGMAAFFAAVVRAPITAIILVTEMTGN---FNLLLPLMVVCLVAYLVADL 390 (402)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhCC---HhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999875 35566666666666666543
No 33
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=1.3e-12 Score=120.82 Aligned_cols=118 Identities=17% Similarity=0.296 Sum_probs=93.8
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
++++++++++.++.+.|.+++.+.+||+|+ +++++|+++++|+...+..+. .....
T Consensus 3 ~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~----~~~~~Giv~~~dl~~~~~~~~-~~~~~------------------- 58 (120)
T cd04641 3 IATARPDTPLIDVLDMLVERRVSALPIVDE----NGKVVDVYSRFDVINLAKEGA-YNNLD------------------- 58 (120)
T ss_pred cEEEcCCCCHHHHHHHHHHcCCCeeeEECC----CCeEEEEEeHHHHHHHHhcCc-ccccc-------------------
Confidence 788999999999999999999999999997 789999999999987654322 00000
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (788)
.++.+ .+..++.|..++.++++++++.+++++|.+.+.+++||+|++|+++|+||++|++++
T Consensus 59 --------~~~~~----------~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~~ 120 (120)
T cd04641 59 --------LTVGE----------ALERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQF 120 (120)
T ss_pred --------CCHHH----------HHhhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhcC
Confidence 00110 011234466677899999999999999999999999999988999999999999863
No 34
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.43 E-value=1.2e-12 Score=117.01 Aligned_cols=94 Identities=15% Similarity=0.240 Sum_probs=84.4
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
++++++++++.++.+.|.+++++++||+|+. +++++|+|+++|+.+.
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~---~~~~~Givt~~Dl~~~------------------------------ 49 (98)
T cd04618 3 LVVFDTKLPVKKAFNALVENGIRSAPLWDSR---KQQFVGMLTITDFILI------------------------------ 49 (98)
T ss_pred EEEECCCCcHHHHHHHHHHcCCceEEEEeCC---CCEEEEEEEHHHHhhh------------------------------
Confidence 7889999999999999999999999999961 3799999999999542
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCC-CeEEEEEeHhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLI 753 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~-g~lvGIITr~DLl~ 753 (788)
+. +.++.+++++.+++++|.+.+.+++||+|++ |+++|+||++|+++
T Consensus 50 ------------------------------~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 50 ------------------------------LR--LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred ------------------------------ee--eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 11 5789999999999999999999999999987 89999999999975
No 35
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.43 E-value=1.6e-12 Score=118.73 Aligned_cols=108 Identities=19% Similarity=0.263 Sum_probs=90.9
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+.++++++++.++.+.|.+++++.+||+|+ +++++|+|+..|+.+......
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~----~~~~~G~v~~~dl~~~~~~~~------------------------- 53 (111)
T cd04603 3 TVSVNCENPLREAIKMINELGARAVVVVDE----ENKVLGQVTLSDLLEIGPNDY------------------------- 53 (111)
T ss_pred eEEeCCCCcHHHHHHHHHHcCCCEEEEEcC----CCCEEEEEEHHHHHhhccccc-------------------------
Confidence 678899999999999999888999999998 789999999999966311100
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (788)
. ...+.++|..++.++++++++.+++++|.+.+.+++||+|++|+++|+||++|+++
T Consensus 54 ------~----------------~~~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 54 ------E----------------TLKVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred ------c----------------ccChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 0 01133448788889999999999999999999999999998899999999999975
No 36
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.41 E-value=2e-12 Score=118.52 Aligned_cols=111 Identities=16% Similarity=0.229 Sum_probs=93.3
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+.++++++++.++.+.|.+++++.+||+|+ +++++|+|+.+|+.+.+.+.. ..
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~----~g~~~G~vt~~dl~~~~~~~~----~~------------------- 55 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDP----HGKLAGVLTKTDVVRQMGRCG----GP------------------- 55 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECC----CCCEEEEEehHHHHHHHhhcC----CC-------------------
Confidence 677899999999999999999999999998 789999999999987543211 00
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (788)
. ...++.++|++++.++.+++++.++++.|.+.+.+++||+|++|+++|+||++|+++
T Consensus 56 -----~----------------~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 56 -----G----------------CTAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred -----c----------------ccCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 0 012234458889999999999999999999999999999998899999999999975
No 37
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.39 E-value=1.5e-12 Score=147.43 Aligned_cols=144 Identities=17% Similarity=0.228 Sum_probs=116.4
Q ss_pred ccHHHHHHHHcCCCCCCC-----CchhhhcccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEE
Q 003889 558 EGLYEEQAHLRGVPLLES-----RPKYKMRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLV 632 (788)
Q Consensus 558 ~~iy~~~l~~kg~p~l~~-----~~~~~l~~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~l 632 (788)
..++..+.+..|+-.++. +....++.++++++|.++ ++++++++++.++.+.|.+++++.+||+|+ ++++
T Consensus 58 ~~MAiaLAr~GGiGvih~nl~~~~q~~~l~~VKv~~iMi~~-pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~----~gkl 132 (479)
T PRK07807 58 RRMAETVARRGGLVVLPQDIPIDVVAEVVAWVKSRDLVFDT-PVTLSPDDTVGDALALLPKRAHGAVVVVDE----EGRP 132 (479)
T ss_pred HHHHHHHHHCCCceEeeCCCCHHHHHHHHhhcccccccccC-CeEECCCCCHHHHHHHHHhcCCceEEEECC----CCeE
Confidence 445555555444433322 223457788999999999 999999999999999999999999999998 7899
Q ss_pred EEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCcee
Q 003889 633 IGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVV 712 (788)
Q Consensus 633 vGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV 712 (788)
+|+|+.+|+... .. ..+++++|++++.++
T Consensus 133 vGIVT~rDL~~~---~~------------------------------------------------~~~V~diMt~~~itV 161 (479)
T PRK07807 133 VGVVTEADCAGV---DR------------------------------------------------FTQVRDVMSTDLVTL 161 (479)
T ss_pred EEEEeHHHHhcC---cc------------------------------------------------CCCHHHhccCCceEE
Confidence 999999998321 00 012445599999999
Q ss_pred cCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhcC
Q 003889 713 PEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (788)
Q Consensus 713 ~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~ 757 (788)
++++++.+++++|.+++.+++||+|++|+++|+||++|+++....
T Consensus 162 ~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~ 206 (479)
T PRK07807 162 PAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIY 206 (479)
T ss_pred CCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 999999999999999999999999988999999999999996554
No 38
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.37 E-value=2.7e-12 Score=137.33 Aligned_cols=130 Identities=20% Similarity=0.345 Sum_probs=107.7
Q ss_pred hcccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCC
Q 003889 581 MRQMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPC 658 (788)
Q Consensus 581 l~~l~v~diM~~--~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~ 658 (788)
+...+|+|+|++ + +++++.+.+++++.+.+.+++++.+||+++. .++++|+|+.+|++..+.... .
T Consensus 64 l~~~~V~diMtpr~~-i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~---~d~iiGiv~~kDll~~~~~~~-----~--- 131 (292)
T PRK15094 64 IADQRVRDIMIPRSQ-MITLKRNQTLDECLDVIIESAHSRFPVISED---KDHIEGILMAKDLLPFMRSDA-----E--- 131 (292)
T ss_pred cCCCEEeEEccchHH-EEEEeCCCCHHHHHHHHHhcCCcEEEEecCC---CCcEEEEEEHHHHHhHhhccC-----C---
Confidence 456799999998 6 9999999999999999999999999999871 268999999999975432111 0
Q ss_pred CCCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecC
Q 003889 659 DTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR 738 (788)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~ 738 (788)
..+++++|. ++++|++++++.++++.|++.+.+.+||+|+
T Consensus 132 ---------------------------------------~~~l~~l~r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe 171 (292)
T PRK15094 132 ---------------------------------------AFSMDKVLR-QAVVVPESKRVDRMLKEFRSQRYHMAIVIDE 171 (292)
T ss_pred ---------------------------------------cCCHHHHcC-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeC
Confidence 011334464 4568999999999999999999999999999
Q ss_pred CCeEEEEEeHhhhhhhhcCCCccc
Q 003889 739 ASRVIGLITRKDLLIEDGEDSTTV 762 (788)
Q Consensus 739 ~g~lvGIITr~DLl~~~~~~~~~~ 762 (788)
.|.++|+||++|+++.+..+..++
T Consensus 172 ~G~viGiVTleDIle~ivGei~de 195 (292)
T PRK15094 172 FGGVSGLVTIEDILELIVGEIEDE 195 (292)
T ss_pred CCCEEEEeEHHHHHHHHhCCCccc
Confidence 999999999999999988776544
No 39
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=7.2e-12 Score=116.41 Aligned_cols=122 Identities=18% Similarity=0.319 Sum_probs=96.1
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCC-cEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCcccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGE-RLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSE 673 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~-~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (788)
+.+++++.++.++.+.|.+.+++.+||+|+ + ++++|+|+++|+...+.+...+...+.
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~----~~~~~~G~v~~~dl~~~~~~~~~~~~~~~----------------- 61 (125)
T cd04631 3 VVTVPPTTPIMEAAKIMVRNGFRRLPVVDE----GTGKLVGIITATDILKYLGGGEKFNKIKT----------------- 61 (125)
T ss_pred ceEeCCCCcHHHHHHHHHHcCcccceeEeC----CCCEEEEEEEHHHHHHHhhccchhccccc-----------------
Confidence 678899999999999999999999999998 5 899999999999876543220100000
Q ss_pred ccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 003889 674 FVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (788)
Q Consensus 674 ~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (788)
-.. ......+++++|.+++.++++++++.++++.|++.+.+.+||+|++|+++|+||++|+++
T Consensus 62 -----------~~~------~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 62 -----------GNG------LEAINEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred -----------ccc------chhhhcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 000 000123456668888999999999999999999999999999998899999999999986
Q ss_pred h
Q 003889 754 E 754 (788)
Q Consensus 754 ~ 754 (788)
+
T Consensus 125 ~ 125 (125)
T cd04631 125 A 125 (125)
T ss_pred C
Confidence 4
No 40
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.35 E-value=7.4e-12 Score=116.14 Aligned_cols=121 Identities=21% Similarity=0.387 Sum_probs=95.9
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+.++++++++.++.+.|.+.+++.+||+|+ +++++|+|+.++|...+.... ..... +
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~~~~~Giv~~~~l~~~~~~~~-~~~~~----------~-------- 60 (124)
T cd04600 4 VVTVTPDTSLEEAWALLRRHRIKALPVVDG----DRRLVGIVTQRDLLRHARPDG-RRPLR----------G-------- 60 (124)
T ss_pred cEEeCCCCCHHHHHHHHHHcCCceeeEECC----CCCEEEEEEHHHHHhhhcccc-cchhh----------h--------
Confidence 788999999999999999999999999987 689999999999976543221 00000 0
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (788)
..+ ......++.++|++.+.++++++++.+++++|.+.+.+.+||+|++|+++|+||++|++++
T Consensus 61 ---------~~~-------~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~~ 124 (124)
T cd04600 61 ---------RLR-------GRDKPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIAA 124 (124)
T ss_pred ---------hhh-------cccccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhcC
Confidence 000 0011234566798999999999999999999999999999999988999999999999763
No 41
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=8.1e-12 Score=113.47 Aligned_cols=109 Identities=23% Similarity=0.317 Sum_probs=92.5
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+.+++++.+++++.+.+.+.+++.+||+|+ +++++|+|+..++.+.+.... .
T Consensus 3 ~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~----~~~~~G~v~~~~l~~~~~~~~-----~------------------- 54 (111)
T cd04639 3 FETLSPADTLDDAADALLATTQHEFPVVDG----DGHLVGLLTRDDLIRALAEGG-----P------------------- 54 (111)
T ss_pred ceEcCCCCcHHHHHHHHHHcCCCcceEECC----CCcEEEEeeHHHHHHHHHhcC-----C-------------------
Confidence 677899999999999999888999999998 689999999999987653221 0
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (788)
..++.++|++++.++++++++.++++.|.+.+.+++||+|++|+++|+||++|+.++
T Consensus 55 -----------------------~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~ 111 (111)
T cd04639 55 -----------------------DAPVRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGEL 111 (111)
T ss_pred -----------------------CCcHHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhcC
Confidence 012344588888999999999999999999999999999988999999999999753
No 42
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.35 E-value=4.9e-12 Score=141.82 Aligned_cols=128 Identities=21% Similarity=0.306 Sum_probs=108.4
Q ss_pred hcccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCC
Q 003889 581 MRQMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPC 658 (788)
Q Consensus 581 l~~l~v~diM~~--~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~ 658 (788)
+++.+|+|+|++ + +++++.+++++++.+.+.+++|+.+||+++. .++++|+|+.+|+...+.++
T Consensus 188 l~~~~v~diMtpr~~-v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~---~d~ivGiv~~kDll~~~~~~---------- 253 (408)
T TIGR03520 188 FGNTDTKQVMRPRLD-IFALDIETSFSEIIPKIIENGYSRIPVYKET---IDNITGVLYIKDLLPHLNKK---------- 253 (408)
T ss_pred cCCCEeeeeCCchHh-EEEEECCCCHHHHHHHHHhCCCCEEEEEcCC---CCceEEEEEHHHHHhHhccC----------
Confidence 568899999997 6 9999999999999999999999999999872 36899999999996532110
Q ss_pred CCCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecC
Q 003889 659 DTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR 738 (788)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~ 738 (788)
..+++++|. +|++|++++++.++++.|++.+.+..+|+|+
T Consensus 254 ---------------------------------------~~~l~~~~~-~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE 293 (408)
T TIGR03520 254 ---------------------------------------NFDWQSLLR-EPYFVPENKKLDDLLRDFQEKKNHLAIVVDE 293 (408)
T ss_pred ---------------------------------------CCCHHHHcC-CCeEeCCCCcHHHHHHHHHhcCceEEEEEcC
Confidence 012344464 6789999999999999999999999999999
Q ss_pred CCeEEEEEeHhhhhhhhcCCCccc
Q 003889 739 ASRVIGLITRKDLLIEDGEDSTTV 762 (788)
Q Consensus 739 ~g~lvGIITr~DLl~~~~~~~~~~ 762 (788)
.|.++|+||.+|+++....+..++
T Consensus 294 ~G~~~GiVT~eDileeivgei~de 317 (408)
T TIGR03520 294 YGGTSGLVTLEDIIEEIVGDISDE 317 (408)
T ss_pred CCCEEEEEEHHHHHHHHhCCCCCc
Confidence 999999999999999987665433
No 43
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=1.6e-11 Score=112.40 Aligned_cols=111 Identities=17% Similarity=0.301 Sum_probs=92.6
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCC-cEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCcccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGE-RLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSE 673 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~-~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (788)
+.++++++++.++++.|++++.+.+||+|+ + ++++|+++.+|+++.+.+.. ..
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~~~~~~G~v~~~dl~~~~~~~~-~~--------------------- 56 (114)
T cd04630 3 VVTIDGLATVAEALQLMKEHGVSSLVVEKR----RESDAYGIVTMRDILKKVVAEG-RD--------------------- 56 (114)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCEEEEEEC----CCCcEEEEEehHHHHHHHHhCC-CC---------------------
Confidence 778899999999999999889999999997 6 89999999999987543321 00
Q ss_pred ccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 003889 674 FVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (788)
Q Consensus 674 ~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (788)
.. ..++.++|++++.++++++++.+++++|.+.+.+++||+|+ |+++|+||++|+++
T Consensus 57 ------~~----------------~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 57 ------PD----------------RVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred ------CC----------------ccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 00 12234458888899999999999999999999999999998 99999999999976
Q ss_pred h
Q 003889 754 E 754 (788)
Q Consensus 754 ~ 754 (788)
+
T Consensus 114 ~ 114 (114)
T cd04630 114 A 114 (114)
T ss_pred C
Confidence 3
No 44
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.33 E-value=1.8e-11 Score=111.04 Aligned_cols=106 Identities=17% Similarity=0.293 Sum_probs=91.5
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+.+++++.++.++.+.+.+++++.+||+|+ +++++|+++.+++++.+....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~----~~~~~G~v~~~~l~~~~~~~~------------------------- 54 (110)
T cd04605 4 VVTISEDASIKEAAKLMIEENINHLPVVDE----DGRLVGIVTSWDISKAVARDK------------------------- 54 (110)
T ss_pred CEEECCCCCHHHHHHHHHhCCCceEEEECC----CCcEEEEEeHHHHHHHHhhCc-------------------------
Confidence 778899999999999999999999999998 789999999999976543211
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (788)
.++.++|.+++.+++++++++++++.|.+.+.+.+||+|++|+++|+||++|+.+
T Consensus 55 ------------------------~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 55 ------------------------KSVEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred ------------------------cCHHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 0133447788899999999999999999999999999998899999999999964
No 45
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.33 E-value=7.8e-12 Score=118.25 Aligned_cols=132 Identities=20% Similarity=0.343 Sum_probs=95.6
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+.+++++.++.++.+.|.+++++.+||+|+ +++++|+|+++|+.+....+. ..+.. .+ ...
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~----~~~~~Gvi~~~dl~~~~~~~~-~~~~~----~~----------~~~ 64 (135)
T cd04586 4 VVTVSPETSVAEAARLMLDNHISGLPVVDD----DGRLVGIVSEGDLLRRAELGT-ERRRA----RW----------LDL 64 (135)
T ss_pred CEEeCCCCCHHHHHHHHHHcCCCCceEECC----CCCEEEEeeHHHHHHHhcccC-cchhh----hH----------HHH
Confidence 788899999999999999999999999998 789999999999976543221 00000 00 000
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (788)
.. ..++.. .........+++++|++++.++.+++++.++++.|++.+.+++||+| +|+++|+||++|++++
T Consensus 65 ~~-------~~~~~~-~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~~ 135 (135)
T cd04586 65 LA-------GAEELA-AAFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLRA 135 (135)
T ss_pred hc-------chHHHH-HHHHHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhcC
Confidence 00 000000 00000112356777988999999999999999999999999999999 6999999999999763
No 46
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.33 E-value=9.1e-12 Score=112.81 Aligned_cols=104 Identities=22% Similarity=0.332 Sum_probs=90.5
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+.+++++++++++.+.+.+++++.+||+|+ +++++|+++..++.... .
T Consensus 4 ~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~----~~~~~G~v~~~~l~~~~---~------------------------- 51 (108)
T cd04596 4 TGYLTTTDTVKDWHELNKETGHSRFPVVDE----KNKVVGIVTSKDVAGKD---P------------------------- 51 (108)
T ss_pred cEEeCCCCCHHHHHHHHHHcCCCceeEECC----CCeEEEEecHHHHhccc---c-------------------------
Confidence 788899999999999999988899999998 78999999999995310 0
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (788)
..+++++|++.+.++++++++.+++++|.+.+.+.+||+|++|+++|++|++|+++
T Consensus 52 -----------------------~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 52 -----------------------DTTIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred -----------------------cccHHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 01234458888899999999999999999999999999998899999999999975
No 47
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.32 E-value=1.7e-11 Score=113.10 Aligned_cols=110 Identities=18% Similarity=0.211 Sum_probs=90.3
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+.++++++++.++.+.|.+++.+.+||+|+ +++++|+|+..++.+....+. +
T Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~----~~~~~Givt~~dl~~~~~~~~----~-------------------- 54 (118)
T cd04617 3 PVVVRENTSVYDAIVTLFLEDVGSLFVVDE----DGDLVGVVSRKDLLKASIGGA----D-------------------- 54 (118)
T ss_pred CEEECCCCCHHHHHHHHHHcCCCEEEEEcC----CCCEEEEEEHHHHHHHHHcCC----C--------------------
Confidence 678999999999999998888899999998 789999999999987643211 0
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCC--CCceecCCCCHHHHHHHHHHcCCCEEEEecCC---CeEEEEEeHh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA---SRVIGLITRK 749 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~--~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~---g~lvGIITr~ 749 (788)
.. ...+.++|.+ .+.++++++++.+++++|.+.+.+++||+|++ ++++|+||++
T Consensus 55 -----~~----------------~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~ 113 (118)
T cd04617 55 -----LQ----------------KVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKT 113 (118)
T ss_pred -----cc----------------CCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhh
Confidence 00 0112233764 67899999999999999999999999999987 6999999999
Q ss_pred hhhh
Q 003889 750 DLLI 753 (788)
Q Consensus 750 DLl~ 753 (788)
|+++
T Consensus 114 ~l~~ 117 (118)
T cd04617 114 NITK 117 (118)
T ss_pred heec
Confidence 9875
No 48
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.32 E-value=1.9e-11 Score=111.98 Aligned_cols=111 Identities=24% Similarity=0.363 Sum_probs=93.1
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+.++++++++.++.+.|.+.+++.+||+|+ +++++|+++.+||.+.+.+.. .
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----~~~~~G~v~~~dl~~~~~~~~-----~------------------- 54 (115)
T cd04593 3 PPVLSATTPLREAAEQLIESKHGSALVVDR----DGGVVGIITLPDLLRALEADE-----A------------------- 54 (115)
T ss_pred CcEeCCCCCHHHHHHHHHhCCCcEEEEEcC----CCCEEEEEEHHHHHHHHhccc-----c-------------------
Confidence 677889999999999999999999999998 789999999999987654321 0
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCC--CeEEEEEeHhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA--SRVIGLITRKDLL 752 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~--g~lvGIITr~DLl 752 (788)
. ....++++|.+++.++.+++++.+++++|.+.+.+++||+|++ |+++|+||++|++
T Consensus 55 -----~----------------~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~ 113 (115)
T cd04593 55 -----G----------------EPSAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVL 113 (115)
T ss_pred -----c----------------ccccHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhh
Confidence 0 0011334588889999999999999999999999999999987 7999999999998
Q ss_pred hh
Q 003889 753 IE 754 (788)
Q Consensus 753 ~~ 754 (788)
++
T Consensus 114 ~~ 115 (115)
T cd04593 114 LA 115 (115)
T ss_pred cC
Confidence 63
No 49
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.31 E-value=8.8e-12 Score=116.43 Aligned_cols=111 Identities=21% Similarity=0.269 Sum_probs=91.5
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+.++++++++.++.+.|+++++..+||+|+ +++++|+++.+++...+..+. .
T Consensus 4 ~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~----~~~~~Gii~~~dl~~~~~~~~-~----------------------- 55 (124)
T cd04608 4 PVTVLPTVTCAEAIEILKEKGFDQLPVVDE----SGKILGMVTLGNLLSSLSSGK-V----------------------- 55 (124)
T ss_pred CEEECCCCCHHHHHHHHHHcCCCEEEEEcC----CCCEEEEEEHHHHHHHHHHhc-c-----------------------
Confidence 788999999999999999999999999998 789999999999987554322 0
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHH---------cCCCEEEEecCCCeEEEE
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQ---------LGLRHIFVVPRASRVIGL 745 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~---------~glr~lpVVd~~g~lvGI 745 (788)
.. ...+.++|++++.++.+++++.++.+++.+ .+.+++||+|++|+++||
T Consensus 56 -----~~----------------~~~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Gi 114 (124)
T cd04608 56 -----QP----------------SDPVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGI 114 (124)
T ss_pred -----CC----------------CCcHHHHhhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEE
Confidence 00 123445599999999999999999996532 367889999988999999
Q ss_pred EeHhhhhhh
Q 003889 746 ITRKDLLIE 754 (788)
Q Consensus 746 ITr~DLl~~ 754 (788)
||++|++++
T Consensus 115 vt~~Dl~~~ 123 (124)
T cd04608 115 VTKIDLLSY 123 (124)
T ss_pred EehhHhhhh
Confidence 999999876
No 50
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.31 E-value=2.4e-11 Score=110.86 Aligned_cols=109 Identities=20% Similarity=0.272 Sum_probs=91.7
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
..+++++.++.++.+.|.+.++..+||+|+ +++++|+++.+|+.+.+.+.. .
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~----~~~~~G~v~~~dl~~~~~~~~-----~------------------- 55 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVDE----NGRLLGTVTDGDIRRALLKGL-----S------------------- 55 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEECC----CCCEEEEEEcHHHHHHHhcCC-----C-------------------
Confidence 567899999999999999888889999988 789999999999977543321 0
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (788)
. ..++.++|++.+.++++++++.+++++|.+.+.+++||+|++|+++|+||++|++.
T Consensus 56 ------~----------------~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 56 ------L----------------DDPVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred ------c----------------CCCHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 0 01234458888889999999999999999999999999998899999999999874
No 51
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.31 E-value=2.7e-11 Score=109.88 Aligned_cols=106 Identities=24% Similarity=0.399 Sum_probs=90.7
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+++++.+.++.++.+.|++.+++.+||+|+ ++++|+++.+|+.+.+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-----~~~~G~v~~~dl~~~~~~~~------------------------- 53 (110)
T cd04595 4 VKTVRPEATIEEARELLLRYGHTALPVVEG-----GRVVGIISRRDVEKALRHGL------------------------- 53 (110)
T ss_pred ceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-----CEEEEEEEHHHHHHHHhccc-------------------------
Confidence 788899999999999999888999999986 79999999999977543211
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (788)
...++.++|++.+.++++++++.+++++|.+.+.+++||+| +|+++|+||++|+++
T Consensus 54 ----------------------~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 54 ----------------------GHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred ----------------------ccCcHHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 01124455888899999999999999999999999999999 699999999999975
No 52
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=2.1e-11 Score=113.22 Aligned_cols=118 Identities=18% Similarity=0.222 Sum_probs=91.8
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCC-cEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCcccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGE-RLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSE 673 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~-~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (788)
+.++++++++.++.+.|.+.++..+||+|+ + ++++|+|+.+|+.+.+..+. -..
T Consensus 3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~----~~~~~~Giv~~~dl~~~~~~~~-~~~-------------------- 57 (123)
T cd04627 3 FIPVPSTASLFQAIEILGSGGIHRVAVTEE----ESGEVIGILSQRRLVEFLWENA-RSF-------------------- 57 (123)
T ss_pred ceecCCCCCHHHHHHHHhhCCcceEEEEeC----CCCcEEEEEEHHHHHHHHHHhH-Hhc--------------------
Confidence 678899999999999999888899999998 6 89999999999987654321 000
Q ss_pred ccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhh
Q 003889 674 FVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752 (788)
Q Consensus 674 ~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl 752 (788)
+..+.. .....+..+.|.+++.++++++++.++++.|.+.+.+++||+|++|+++|+||++|+.
T Consensus 58 ----------~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 58 ----------PGLDPL-----YPIPLRDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred ----------cchhhh-----hhhhhhhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 000000 0001122334778889999999999999999999999999999889999999999984
No 53
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.30 E-value=1.9e-11 Score=111.80 Aligned_cols=108 Identities=26% Similarity=0.381 Sum_probs=87.8
Q ss_pred eEEecCcccHHHHHHHHhhCC-CCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCcccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNK-HNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSE 673 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~-~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (788)
+.++++++++.++.+.|.+.+ ...+||+|+ +++++|+|+.+|+.....+.. .
T Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~----~~~~~G~v~~~dl~~~~~~~~--~--------------------- 55 (114)
T cd04801 3 FPTVPAHLTLREFVREYVLGSNQRRFVVVDN----EGRYVGIISLADLRAIPTSQW--A--------------------- 55 (114)
T ss_pred cceeCCCCCHHHHHHHHhccCCceeEEEEcC----CCcEEEEEEHHHHHHHHHhhc--c---------------------
Confidence 678899999999999987664 788999988 789999999999977543211 0
Q ss_pred ccccCCCCCCCccccccCccccccccCcccccCC--CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhh
Q 003889 674 FVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDL 751 (788)
Q Consensus 674 ~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~--~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DL 751 (788)
..++.++|++ .+.++.+++++.++++.|++.+.+++||+|++++++|+||++|+
T Consensus 56 ------------------------~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di 111 (114)
T cd04801 56 ------------------------QTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADL 111 (114)
T ss_pred ------------------------ccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccce
Confidence 0112333653 25689999999999999999999999999988999999999998
Q ss_pred hh
Q 003889 752 LI 753 (788)
Q Consensus 752 l~ 753 (788)
++
T Consensus 112 ~~ 113 (114)
T cd04801 112 LR 113 (114)
T ss_pred ec
Confidence 75
No 54
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=3.1e-11 Score=109.73 Aligned_cols=111 Identities=14% Similarity=0.278 Sum_probs=92.8
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+.+++++.++.++.+.+.+.+++.+||+|+ +++++|+++.+++.+.+.... ..
T Consensus 3 ~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~----~~~~~Giv~~~~l~~~~~~~~-----~~------------------ 55 (113)
T cd04623 3 VITVRPDATVAEAAKLMAEKNIGAVVVVDD----GGRLVGIFSERDIVRKVALRG-----AS------------------ 55 (113)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCeEEEECC----CCCEEEEEehHHHHHHHhhcC-----CC------------------
Confidence 677899999999999999999999999998 689999999999987653321 00
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (788)
. ...++.++|++++.++.+++++.++++.|.+.+.+++||+|+ |+++|+||++|++++
T Consensus 56 -----~----------------~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~~ 113 (113)
T cd04623 56 -----A----------------LDTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVKA 113 (113)
T ss_pred -----c----------------cccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhcC
Confidence 0 012344558888899999999999999999999999999998 999999999999763
No 55
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.30 E-value=2.3e-11 Score=110.68 Aligned_cols=110 Identities=22% Similarity=0.414 Sum_probs=93.7
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
++++++++++.++.+.|++.+++.+||+|+ +++++|+|++.|+.+.+.+.. .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~G~v~~~~l~~~~~~~~-----~------------------- 54 (114)
T cd04613 3 VVTIPEDTPLNELLDVIAHSPENNFPVVDD----DGRLVGIVSLDDIREILFDPS-----L------------------- 54 (114)
T ss_pred ceeeCCCCcHHHHHHHHHhCCCcceeEECC----CCCEEEEEEHHHHHHHHhccc-----c-------------------
Confidence 678899999999999999999999999998 689999999999987543321 0
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecC-CCeEEEEEeHhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR-ASRVIGLITRKDLLI 753 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~-~g~lvGIITr~DLl~ 753 (788)
. ...++.++|++++.++++++++.++++.|.+.+.+++||+|+ +++++|++|++|+++
T Consensus 55 ----------~-----------~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 55 ----------Y-----------DLVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred ----------c-----------ccEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 0 012344558899999999999999999999999999999998 899999999999975
No 56
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=2.1e-11 Score=112.79 Aligned_cols=120 Identities=22% Similarity=0.335 Sum_probs=96.3
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+.++++++++.++.+.|.+.+++.+||+|+ +++++|+++.+++.+.+.... ..+..
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~~~~~G~v~~~~l~~~~~~~~--~~~~~------------------ 58 (122)
T cd04803 3 VVTLSEDDSLADAEELMREHRIRHLPVVNE----DGKLVGLLTQRDLLRAALSSL--SDNGE------------------ 58 (122)
T ss_pred CEEeCCCCcHHHHHHHHHHcCcccccEECC----CCCEEEEEEHHHHHHHhcccc--ccccc------------------
Confidence 678899999999999999999999999998 789999999999987653221 00000
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (788)
. .. +.....++.++|++++.++++++++.++++.|.+.+.+.+||+|++|+++|+||++|++++
T Consensus 59 -----~---~~--------~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~~ 122 (122)
T cd04803 59 -----E---SL--------TKERDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLRL 122 (122)
T ss_pred -----c---cc--------ccccCcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhcC
Confidence 0 00 0012345666788899999999999999999999999999999988999999999999863
No 57
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.30 E-value=3.4e-11 Score=108.80 Aligned_cols=105 Identities=24% Similarity=0.367 Sum_probs=90.4
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+.+++++.++.++.+.|.++++..+||+|+ +++++|+++.+|+.......
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~----~~~~~G~v~~~dl~~~~~~~-------------------------- 53 (109)
T cd04583 4 PVTITPDRTLAEAIKLMRDKKVDSLLVVDK----DNKLLGIVSLESLEQAYKEA-------------------------- 53 (109)
T ss_pred CEEECCCCCHHHHHHHHHHCCCceEEEEcC----CCcEEEEEEHHHHHHHhhcC--------------------------
Confidence 677899999999999999989999999998 68999999999996643111
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (788)
.++.++|.+.+.++++++++.++.+.|.+.+.+++||+|++|+++|+||++|+++
T Consensus 54 ------------------------~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 54 ------------------------KSLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred ------------------------CcHhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 1133347788889999999999999999999999999998899999999999975
No 58
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=4.6e-11 Score=108.66 Aligned_cols=109 Identities=17% Similarity=0.352 Sum_probs=92.4
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+.+++.+.+++++.+.+.+.+++.+||+|+ +++++|+++.+++++.+.... .
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~----~~~~~G~v~~~~l~~~~~~~~--~---------------------- 54 (112)
T cd04624 3 VVTVDPDTSIREAAKLMAEENVGSVVVVDP----DERPIGIVTERDIVRAVAAGI--D---------------------- 54 (112)
T ss_pred CeEECCCCcHHHHHHHHHHcCCCEEEEECC----CCCEEEEeeHHHHHHHHhccC--C----------------------
Confidence 677899999999999999888999999998 789999999999977543321 0
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (788)
...++.++|++++.++.+++++.++++.|.+.+...+||+|++|+++|++|++|+++
T Consensus 55 ----------------------~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 55 ----------------------LDTPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred ----------------------CccCHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 011234458888999999999999999999999999999998899999999999975
No 59
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.28 E-value=2.5e-11 Score=138.41 Aligned_cols=147 Identities=14% Similarity=0.174 Sum_probs=109.9
Q ss_pred cHHHHHHHHcCCCCCCCCc--hhhhc-ccchhhhcc---CCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEE
Q 003889 559 GLYEEQAHLRGVPLLESRP--KYKMR-QMTAKEACG---AQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLV 632 (788)
Q Consensus 559 ~iy~~~l~~kg~p~l~~~~--~~~l~-~l~v~diM~---~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~l 632 (788)
.+--.+.+.+|+++++... +...+ -.+++++|. .+ .+++++++++.++.+.|.+++++.+||+|+. .+++++
T Consensus 66 alAiala~~gG~g~Ih~n~sie~qa~lV~kVk~~~~g~i~~-~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~-~~~gkL 143 (502)
T PRK07107 66 NMAIALAREGGLSFIFGSQSIESEAAMVRRVKNYKAGFVVS-DSNLTPDNTLADVLDLKEKTGHSTVAVTEDG-TAHGKL 143 (502)
T ss_pred HHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHHHHhcCCcCC-CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCC-CcCCEE
Confidence 3344445677777654221 11112 236888886 34 5689999999999999999999999999861 114799
Q ss_pred EEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCC--CCc
Q 003889 633 IGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNP--SPY 710 (788)
Q Consensus 633 vGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~--~p~ 710 (788)
+|+|+..|+.... .. . ...++++|++ +++
T Consensus 144 vGIVT~~DLr~~~--~~-------------------------------~----------------~~~V~dIMt~~~~~i 174 (502)
T PRK07107 144 LGIVTSRDYRISR--MS-------------------------------L----------------DTKVKDFMTPFEKLV 174 (502)
T ss_pred EEEEEcHHhhccc--cC-------------------------------C----------------CCCHHHHhCCCCCeE
Confidence 9999999985310 00 0 1123445876 678
Q ss_pred eecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhc
Q 003889 711 VVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (788)
Q Consensus 711 tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (788)
++++++++.+++++|.+++++++||+|++|+++|+||++|+++...
T Consensus 175 tv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~~ 220 (502)
T PRK07107 175 TANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHKE 220 (502)
T ss_pred EECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhccc
Confidence 8999999999999999999999999998899999999999998643
No 60
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=2.6e-11 Score=110.57 Aligned_cols=111 Identities=21% Similarity=0.303 Sum_probs=92.0
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+.++++++++.++.+.|.+++.+.+||+|+ +++++|+|+..++.+.+.... +...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~----~~~~~G~v~~~~l~~~~~~~~-~~~~-------------------- 57 (114)
T cd04629 3 PVTFTPDMSVTEAVEKLLKSKISGGPVVDD----NGNLVGFLSEQDCLKQLLESS-YHCD-------------------- 57 (114)
T ss_pred CeEeCCCCCHHHHHHHHHhcCCCCccEECC----CCeEEEEeehHHHHHHhhhhh-hccC--------------------
Confidence 678899999999999998888889999998 789999999999977543221 0000
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (788)
...++.++|++.+.++.+++++.++++.|.+.+.+++||+|+ |+++|+||++|+++
T Consensus 58 ----------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 58 ----------------------GVATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred ----------------------CCccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 012344558888899999999999999999999999999998 99999999999976
No 61
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.27 E-value=4.9e-11 Score=108.31 Aligned_cols=107 Identities=27% Similarity=0.430 Sum_probs=89.7
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCC-cEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCcccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGE-RLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSE 673 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~-~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (788)
+++++++.+++++.+.|.+.+++.+||+|+ + ++++|+++..++.+...+.. .
T Consensus 3 ~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~----~~~~~~G~v~~~~l~~~~~~~~--~--------------------- 55 (111)
T cd04590 3 IVALDADDTLEEILELIAESGHSRFPVYDG----DLDNIIGVVHVKDLLRALAEGE--E--------------------- 55 (111)
T ss_pred eEEEcCCCCHHHHHHHHhhCCCceEEEECC----CCceEEEEEEHHHHHHHHHcCC--C---------------------
Confidence 788999999999999999988899999998 6 89999999999987654321 0
Q ss_pred ccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 003889 674 FVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (788)
Q Consensus 674 ~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (788)
. ..++++| +++.++.+++++.++++.|.+.+.+++||+|++|+++|+||++|+++
T Consensus 56 -------~-----------------~~~~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 56 -------D-----------------LDLRDLL-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred -------c-----------------CCHHHHh-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 0 0112224 45678999999999999999999999999999899999999999975
No 62
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.27 E-value=6e-11 Score=107.52 Aligned_cols=107 Identities=20% Similarity=0.361 Sum_probs=91.3
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+++++++.++.++.+.|.+.+++.+||+|+ ++++|+++.+|+.+...+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~G~v~~~~l~~~~~~~~------------------------- 52 (110)
T cd04588 3 LITLNPNATLREAARLFNTHHIHGAPVVDD-----GKLVGIVTLSDIAHAIARGL------------------------- 52 (110)
T ss_pred cEEECCCCCHHHHHHHHHHcCCCEEEEeeC-----CEEEEEEEHHHHHHHHhccc-------------------------
Confidence 678899999999999999989999999986 79999999999977543321
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (788)
...++.++|++++.++++++++.++++.|.+.+.+.+||+|++|+++|+||++|+++
T Consensus 53 ----------------------~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 53 ----------------------ELAKVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred ----------------------cccCHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 002234457888899999999999999999999999999998899999999999975
No 63
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.27 E-value=4e-11 Score=106.65 Aligned_cols=94 Identities=17% Similarity=0.306 Sum_probs=84.2
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+++++++.++.++.+.|.+++...+||+|+ +++++|+++.+|+...
T Consensus 3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~----~~~~~Giv~~~dl~~~------------------------------ 48 (96)
T cd04614 3 VPTVWEETPLPVAVRIMELANVKALPVLDD----DGKLSGIITERDLIAK------------------------------ 48 (96)
T ss_pred ccEeCCCCcHHHHHHHHHHcCCCeEEEECC----CCCEEEEEEHHHHhcC------------------------------
Confidence 678899999999999999899999999997 7899999999999431
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (788)
..+.++++++++.++.++|.+.+.+++||+|++|+++|+||++|++++
T Consensus 49 --------------------------------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~~ 96 (96)
T cd04614 49 --------------------------------SEVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLKP 96 (96)
T ss_pred --------------------------------CCcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhcC
Confidence 015788999999999999999999999999988999999999999863
No 64
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=4.6e-11 Score=112.49 Aligned_cols=127 Identities=21% Similarity=0.350 Sum_probs=96.0
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
++++++++++.++.+.|.+.+++.+||+|+ +++++|+++..++...+.+.. ..... ..
T Consensus 3 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~----~~~~~G~i~~~~l~~~~~~~~--~~~~~------------~~---- 60 (132)
T cd04636 3 VITVKKDDTLRDVVEILLTGKISGVPVVDN----EGRVVGIVSEGDLIRKIYKGK--GLFYV------------TL---- 60 (132)
T ss_pred CeEeCCCCcHHHHHHHHHHhCCCccceECC----CCCEEEEEeHHHHHHHHhccC--Ccccc------------cc----
Confidence 678899999999999999888999999998 689999999999987654322 00000 00
Q ss_pred cccCCCCCCCccccccC-cccc--ccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhh
Q 003889 675 VKPASSKGLSIDDIHLS-SDDM--EMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDL 751 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~-~~~~--~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DL 751 (788)
..++... +++. ....++.++|++++.++.+++++.+++++|.+.+.+.+||+|+ |+++|+||++|+
T Consensus 61 ----------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl 129 (132)
T cd04636 61 ----------LYSVIFLDESKIKKLLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDI 129 (132)
T ss_pred ----------cccccccchHHHHHHcCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHh
Confidence 0000000 0000 0123567779999999999999999999999999999999998 999999999999
Q ss_pred hhh
Q 003889 752 LIE 754 (788)
Q Consensus 752 l~~ 754 (788)
+++
T Consensus 130 ~~~ 132 (132)
T cd04636 130 IRS 132 (132)
T ss_pred hcC
Confidence 863
No 65
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=5.3e-11 Score=111.10 Aligned_cols=123 Identities=24% Similarity=0.272 Sum_probs=92.2
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
++++++++++.++.+.|.+++.+.+||+|+ +++++|+++..|+.+...++. .....
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~----~~~~~Giv~~~dl~~~~~~~~-~~~~~------------------- 58 (126)
T cd04642 3 VVSIDSDERVLDAFKLMRKNNISGLPVVDE----KGKLIGNISASDLKGLLLSPD-DLLLY------------------- 58 (126)
T ss_pred eEEECCCccHHHHHHHHHHhCCCcccEECC----CCcEEEEEEHHHhhhhhcCcc-hhhcc-------------------
Confidence 788999999999999999889999999998 789999999999987543221 00000
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (788)
...... ++. ....+....|.+++.++++++++.++.++|.+.+.+++||+|++++++|+||+.|+++
T Consensus 59 -----~~~~~~-~~~------~~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 59 -----RTITFK-ELS------EKFTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred -----cchhhh-hhh------hhcccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 000000 000 0001122336777889999999999999999999999999998899999999999975
No 66
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=5.5e-11 Score=108.08 Aligned_cols=108 Identities=18% Similarity=0.275 Sum_probs=91.1
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+.+++++.+++++.+.+.+++++.+||+|+ +++++|+++.+|+........ .
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~----~~~~~G~v~~~dl~~~~~~~~-~----------------------- 54 (111)
T cd04626 3 FPTIDEDASIREALHEMLKYNTNEIIVKDN----EEKLKGVVTFTDILDLDLFES-F----------------------- 54 (111)
T ss_pred ceEECCCccHHHHHHHHHHhCCCeEEEEcC----CCCEEEEEehHHhHHHHhhcc-c-----------------------
Confidence 678899999999999999999999999998 789999999999976532211 0
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (788)
....+.++|++++.++.+++++.++++.|.+.+.+.+||+|+ |+++|+||++|+++
T Consensus 55 ----------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 55 ----------------------LEKKVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred ----------------------ccCcHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 001234458888899999999999999999999999999998 99999999999874
No 67
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.26 E-value=2e-11 Score=138.85 Aligned_cols=124 Identities=16% Similarity=0.203 Sum_probs=104.0
Q ss_pred cccchhhhccCCceEEecCcccHHHHHHHHhh-----CCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCC
Q 003889 582 RQMTAKEACGAQKVVSLPRIIKVADVVSILRT-----NKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPL 656 (788)
Q Consensus 582 ~~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~-----~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~ 656 (788)
...+++++|+++ +++++++++++++.+.+++ .+...+||+|+ +++++|+|+.+|++.. ..
T Consensus 129 ~e~tvg~iMt~~-~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~----~~~l~GvV~l~dLl~a---~~------- 193 (449)
T TIGR00400 129 SDDSAGRIMTIE-YVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNE----SKHLKGVLSIRDLILA---KP------- 193 (449)
T ss_pred CcchHHHhCcCc-eEEECCCCcHHHHHHHHHhcCCCccceeEEEEECC----CCeEEEEEEHHHHhcC---CC-------
Confidence 456899999998 9999999999999999975 23456788887 7899999999998431 00
Q ss_pred CCCCCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEe
Q 003889 657 PCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVV 736 (788)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVV 736 (788)
..+++++|+++++++++++++.++.+.|++++...+|||
T Consensus 194 -----------------------------------------~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVV 232 (449)
T TIGR00400 194 -----------------------------------------EEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVV 232 (449)
T ss_pred -----------------------------------------CCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEE
Confidence 012444598889999999999999999999999999999
Q ss_pred cCCCeEEEEEeHhhhhhhhcCCCcc
Q 003889 737 PRASRVIGLITRKDLLIEDGEDSTT 761 (788)
Q Consensus 737 d~~g~lvGIITr~DLl~~~~~~~~~ 761 (788)
|++|+++|+||++|+++...++..+
T Consensus 233 D~~g~lvGiIt~~Dil~~l~~~~~e 257 (449)
T TIGR00400 233 DNEGRLVGIVTVDDIIDVIQSEATE 257 (449)
T ss_pred cCCCeEEEEEEHHHHHHHHHhhhHH
Confidence 9999999999999999988776543
No 68
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.26 E-value=6e-11 Score=108.08 Aligned_cols=110 Identities=17% Similarity=0.285 Sum_probs=91.5
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+.++++++++.++.+.+.+.+++.+||+|+ +++++|+++.+|+.+.+.....+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~----~~~~~G~v~~~dl~~~~~~~~~~----------------------- 55 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDD----KKRLVGIITRYDVLSYALESEEL----------------------- 55 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcC----CCCEEEEEEHHHHHHhhhhhhhh-----------------------
Confidence 567789999999999999999999999998 68999999999997643221100
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (788)
...++.++|.+++.++++++++.++++.|.+.+...+||+|++|+++|+||++|+++
T Consensus 56 ----------------------~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 56 ----------------------KDAKVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred ----------------------cCCcHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 011234458888899999999999999999999999999998899999999999975
No 69
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=3.9e-11 Score=110.96 Aligned_cols=120 Identities=17% Similarity=0.275 Sum_probs=93.3
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+.+++++.++.++.+.|.+.+++.+||+|+ +++++|++++.|+++...... + .+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~----~~~~~G~v~~~~l~~~~~~~~-~-~~~~------------------ 58 (122)
T cd04635 3 PVTCTPDDPVSKVWDLMLESGFTGLPVVQK----AGELIGIITRRDIIRAGSVRT-S-VEDQ------------------ 58 (122)
T ss_pred CEEeCCCCcHHHHHHHHHHcCCCcccEECC----CCcEEEEEEcHHHHhhccccc-c-ccch------------------
Confidence 678899999999999999889999999997 799999999999975321100 0 0000
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (788)
. .. ......++.++|.+++.++++++++.++++.|.+.+.+.+||+|++|+++|++|++|++++
T Consensus 59 -----~---------~~--~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~~ 122 (122)
T cd04635 59 -----Q---------RT--QTKASPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLKA 122 (122)
T ss_pred -----h---------hh--hhhccCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhcC
Confidence 0 00 0001223445688889999999999999999999999999999988999999999999863
No 70
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.25 E-value=6.5e-11 Score=106.55 Aligned_cols=103 Identities=16% Similarity=0.213 Sum_probs=88.6
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+++++++.++.++.+.|.+.++..+||+|+ +++++|+++..|+.+....
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~----~g~~~Giv~~~dl~~~~~~--------------------------- 51 (106)
T cd04582 3 PITVRPDDPLSDALGLMDDSDLRALTVVDA----DGQPLGFVTRREAARASGG--------------------------- 51 (106)
T ss_pred CcEecCCCcHHHHHHHHHhcCCCEEEEECC----CCCEEEEEeHHHHHHhccc---------------------------
Confidence 678899999999999999888899999987 7899999999999653100
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (788)
+ +.++|.+.+.++.+++++.++++.|.+.+...+||+|++++++|+||++|+++
T Consensus 52 ---------~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 52 ---------C----------------CGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred ---------c----------------hhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 1 22347777788999999999999999999999999999899999999999976
No 71
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.25 E-value=6e-11 Score=135.92 Aligned_cols=147 Identities=20% Similarity=0.190 Sum_probs=112.7
Q ss_pred hCccHHHHHHHHcCCCCCCC-CchhhhcccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEE
Q 003889 556 FSEGLYEEQAHLRGVPLLES-RPKYKMRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIG 634 (788)
Q Consensus 556 ~~~~iy~~~l~~kg~p~l~~-~~~~~l~~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvG 634 (788)
+..-++|.+++.+++-..+. ...+.++.++++|+|.++ +.++++++++.++.+.|.+++++.+||+|+ +++++|
T Consensus 306 ~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~~v~~im~~~-~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~----~~~~~G 380 (454)
T TIGR01137 306 MTKFLNDEWMKDNGFLDDEVLTVFDVLKNATVKDLHLPA-PVTVHPTETVGDAIEILREYGFDQLPVVTE----AGKVLG 380 (454)
T ss_pred cCcccChHHHHhcCCcccccccHHHHhccCCHHHhCcCC-CeEECCCCcHHHHHHHHHHcCCCEEEEEcC----CCeEEE
Confidence 34444557777666532211 234558899999999998 999999999999999999989999999998 789999
Q ss_pred EEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecC
Q 003889 635 LVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPE 714 (788)
Q Consensus 635 iI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~ 714 (788)
+|+.+|+.+.+..+. . .. ..++.++|++++.++++
T Consensus 381 ivt~~dl~~~~~~~~-----~------------------------~~----------------~~~v~~im~~~~~~v~~ 415 (454)
T TIGR01137 381 SVTLRELLSALFAGK-----A------------------------NP----------------DDAVSKVMSKKFIQIGE 415 (454)
T ss_pred EEEHHHHHHHHhccC-----C------------------------Cc----------------CCCHHHhcCCCCeEECC
Confidence 999999987543321 0 00 01234458888889999
Q ss_pred CCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhh
Q 003889 715 DMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIED 755 (788)
Q Consensus 715 ~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~ 755 (788)
++++.++.++|.+.+ .|||+++|+++|+||++|+++++
T Consensus 416 ~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 416 GEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred cCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence 999999999999864 35555569999999999999864
No 72
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=6.1e-11 Score=108.49 Aligned_cols=114 Identities=18% Similarity=0.313 Sum_probs=90.5
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+++++.++++.++.+.+++.+.+.+||+|+ +++++|+++.+++.+.+.+.. ..+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----~~~~~Giv~~~dl~~~~~~~~--~~~-------------------- 56 (116)
T cd04643 3 VAYVQDTNTLRHALLVLTKHGYSAIPVLDK----EGKYVGTISLTDILWKLKGLE--NLD-------------------- 56 (116)
T ss_pred cEEECCCCcHHHHHHHHHHCCCceeeeECC----CCcEEEEEeHHHHHHHhhccC--chh--------------------
Confidence 788999999999999999999999999997 789999999999987543211 000
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (788)
..++ ....+.++|++.+.++.+++++.+++++|.+.+ .+||+|++|+++|+||++|++++
T Consensus 57 ----------~~~~--------~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~~ 116 (116)
T cd04643 57 ----------LERL--------VDLKVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILKA 116 (116)
T ss_pred ----------HHHH--------hCCcHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhcC
Confidence 0000 011244558888999999999999999998865 59999988999999999999864
No 73
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.24 E-value=7.4e-11 Score=107.47 Aligned_cols=110 Identities=15% Similarity=0.220 Sum_probs=92.6
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+.+++++.++.++.+.+.+.+++.+||+|+ +++++|+++..++.+++.+.. ..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~----~~~~~G~v~~~~i~~~~~~~~--~~~-------------------- 57 (114)
T cd04604 4 LPLVSPDTSLKDALLEMSRKGLGMTAVVDE----DGRLVGIFTDGDLRRALEKGL--DIL-------------------- 57 (114)
T ss_pred ccccCCCCcHHHHHHHHHhcCccEEEEEcC----CCCEEEEechHHHHHHHhccC--ccc--------------------
Confidence 667889999999999998888889999998 689999999999988765322 000
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (788)
..++.++|++.+.++.+++++.++++.|++.+...+||+|++++++|+||++|+++
T Consensus 58 -----------------------~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 58 -----------------------TLPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred -----------------------cCCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 01234458888889999999999999999999999999998899999999999975
No 74
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=8.1e-11 Score=110.05 Aligned_cols=124 Identities=16% Similarity=0.262 Sum_probs=93.9
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+++++++.++.++.+.|.+.+++.+||+|+ +++++|+++++|+..++.... ...... .
T Consensus 3 ~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~----~~~~~G~it~~dl~~~~~~~~-~~~~~~--~--------------- 60 (128)
T cd04632 3 VITVREDDSVGKAINVLREHGISRLPVVDD----NGKLTGIVTRHDIVDFVVRDR-DKARTG--D--------------- 60 (128)
T ss_pred ceEeCCCCCHHHHHHHHHHcCCCEEEEECC----CCcEEEEEEHHHHHHHHhhhh-hhcchh--h---------------
Confidence 677889999999999999999999999998 789999999999987653211 000000 0
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEec--CCCeEEEEEeHhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVP--RASRVIGLITRKDLL 752 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd--~~g~lvGIITr~DLl 752 (788)
... ..+.....+++++|+++++++.+++++.++++.|.+.+.+.+||++ ++++++|+||++|++
T Consensus 61 ---------~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~ 126 (128)
T cd04632 61 ---------RSG-----EKERMLDLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVL 126 (128)
T ss_pred ---------hhh-----hhhhhccCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhh
Confidence 000 0000012335566888899999999999999999999999999984 469999999999998
Q ss_pred hh
Q 003889 753 IE 754 (788)
Q Consensus 753 ~~ 754 (788)
++
T Consensus 127 ~~ 128 (128)
T cd04632 127 RA 128 (128)
T ss_pred cC
Confidence 63
No 75
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.24 E-value=1.2e-10 Score=105.53 Aligned_cols=108 Identities=28% Similarity=0.487 Sum_probs=91.1
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+.++++++++.++.+.|.++++..+||+|+ ++++|+++.+|+.+....+. .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~G~v~~~~l~~~~~~~~--~---------------------- 53 (111)
T cd04611 3 ILTCPPDTSLAEAASRMRERRISSIVVVDD-----GRPLGIVTERDILRLLASGP--D---------------------- 53 (111)
T ss_pred ceEECCCCcHHHHHHHHHHcCCCEEEEeeC-----CEEEEEEeHHHHHHHHhcCC--C----------------------
Confidence 678899999999999999888889999986 79999999999977543211 0
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (788)
....+.++|++++.++++++++.++++.|.+.+.+.+||+|++|+++|+||++|+++
T Consensus 54 ----------------------~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 54 ----------------------LQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred ----------------------CCcCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 011234458888899999999999999999999999999998899999999999975
No 76
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.23 E-value=8.9e-11 Score=107.40 Aligned_cols=109 Identities=17% Similarity=0.300 Sum_probs=87.1
Q ss_pred eEEecCcccHHHHHHHHhhCC-CCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCcccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNK-HNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSE 673 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~-~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (788)
+.+++.+.++.++.+.|.+++ ...+||+|+ ++++|+++..|+.+.+..+. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~G~v~~~dl~~~~~~~~-~~--------------------- 55 (115)
T cd04620 3 PLTVTPDTPVADAIALMSQQGDSSCVLVVEK-----GRLLGIFTERDIVRLTAIGK-DL--------------------- 55 (115)
T ss_pred CeEeCCCCcHHHHHHHHHhcCCCceEEEcCC-----CcEEEEEeHHHHHHHHhcCC-Cc---------------------
Confidence 577899999999999998777 566776664 78999999999987543321 00
Q ss_pred ccccCCCCCCCccccccCccccccccCcccccCCCCceecCC--CCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhh
Q 003889 674 FVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPED--MSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDL 751 (788)
Q Consensus 674 ~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~--~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DL 751 (788)
....+.++|.+++.+++++ +++.+++++|.+.+...+||+|++|+++|+||++|+
T Consensus 56 -----------------------~~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl 112 (115)
T cd04620 56 -----------------------SDLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESI 112 (115)
T ss_pred -----------------------cccCHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHh
Confidence 0012344577788888887 789999999999999999999988999999999999
Q ss_pred hh
Q 003889 752 LI 753 (788)
Q Consensus 752 l~ 753 (788)
++
T Consensus 113 ~~ 114 (115)
T cd04620 113 RQ 114 (115)
T ss_pred hc
Confidence 86
No 77
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.23 E-value=4.2e-11 Score=135.67 Aligned_cols=122 Identities=17% Similarity=0.235 Sum_probs=104.4
Q ss_pred hhcccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCC
Q 003889 580 KMRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCD 659 (788)
Q Consensus 580 ~l~~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~ 659 (788)
.++.+++.++|.++ +++++++++++++.+.|++.+++.+||+|+ ++++|+|+.+|+... ..
T Consensus 84 ~v~~VKv~eim~~~-pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~-----gklvGIVT~rDL~~~---~~---------- 144 (475)
T TIGR01303 84 TVAFVKSRDLVLDT-PITLAPHDTVSDAMALIHKRAHGAAVVILE-----DRPVGLVTDSDLLGV---DR---------- 144 (475)
T ss_pred HHhhcchhhccccC-CeEECCCCCHHHHHHHHHhcCCeEEEEEEC-----CEEEEEEEHHHhhcC---CC----------
Confidence 45678889999998 999999999999999999998888888876 689999999998321 00
Q ss_pred CCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCC
Q 003889 660 TRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA 739 (788)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~ 739 (788)
..+++++|++++.++++++++.+++++|.+++.+++||+|++
T Consensus 145 --------------------------------------~~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~ 186 (475)
T TIGR01303 145 --------------------------------------FTQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDAD 186 (475)
T ss_pred --------------------------------------CCCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCC
Confidence 012445599999999999999999999999999999999988
Q ss_pred CeEEEEEeHhhhhhhhcCC
Q 003889 740 SRVIGLITRKDLLIEDGED 758 (788)
Q Consensus 740 g~lvGIITr~DLl~~~~~~ 758 (788)
|+++|+||++|+++.....
T Consensus 187 g~LvGIIT~~DLl~~~~~~ 205 (475)
T TIGR01303 187 GTLAGILTRTGALRATIYT 205 (475)
T ss_pred CeEEEEEEHHHHHHHHhCC
Confidence 9999999999999865543
No 78
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.23 E-value=9.1e-11 Score=108.04 Aligned_cols=119 Identities=20% Similarity=0.340 Sum_probs=93.7
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+.+++++.++.++.+.|.+.+++.+||+|+ ++++|++++.++........ ....
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-----~~~~G~i~~~~l~~~~~~~~--~~~~------------------- 56 (122)
T cd04585 3 PITVTPDTSLMEALKLMKENSIRRLPVVDR-----GKLVGIVTDRDLKLASPSKA--TTLD------------------- 56 (122)
T ss_pred CEEeCCCCcHHHHHHHHHhCCcceeeEecC-----CeEEEEEeHHHHHHhhhccc--cccc-------------------
Confidence 678899999999999999999999999986 79999999999977543211 0000
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (788)
..+... .....++.++|++++.++++++++.++++.|.+.+.+.+||+|++|+++|+||++|+++
T Consensus 57 ----------~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 57 ----------IWELYY----LLSKIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred ----------chhhhh----hhcccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 000000 00123456678889999999999999999999999999999998899999999999986
No 79
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.22 E-value=1.4e-10 Score=105.18 Aligned_cols=108 Identities=22% Similarity=0.439 Sum_probs=91.0
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+.+++++.+++++.+.|.+.+.+.+||+|+ ++++|+++++|+.+...+.. .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~G~v~~~dl~~~~~~~~-~----------------------- 53 (111)
T cd04612 3 VVTVPVDLTVDEVLALMFGERHRGYPVVDD-----GRLVGIVTLADIRRVPAEGR-E----------------------- 53 (111)
T ss_pred CEEeCCCCcHHHHHHHHHHcCCCcceEeeC-----CeEEEEEEHHHHHHHHhcCc-c-----------------------
Confidence 678899999999999999888899999986 79999999999976543211 0
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (788)
. ..++.+.|.+++.++.+++++.++++.|.+.+.+++||+|++|+++|+||++|+++
T Consensus 54 -----------~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 54 -----------A-----------TVLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred -----------c-----------ccCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 0 01233447888899999999999999999999999999998899999999999975
No 80
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.22 E-value=6.4e-11 Score=134.48 Aligned_cols=119 Identities=18% Similarity=0.350 Sum_probs=102.2
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCC---cEEEEEEeHHHHHHHHhcccccCCCCCCCC
Q 003889 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGE---RLVIGLVLRSHLLVLLQSKVDFQHSPLPCD 659 (788)
Q Consensus 583 ~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~---~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~ 659 (788)
-.+.++.|.++ +++++++++++++.+.|.+++++.+||+|+ + ++++|+|+.+||..... .
T Consensus 79 Vk~~~~~~~~~-~vtl~~~~tv~eal~~m~~~~~s~lpVvd~----~~~~~~lvGIVt~rDL~~~~~--~---------- 141 (450)
T TIGR01302 79 VKRAENGIISD-PVTISPETTVADVLELMERKGISGIPVVED----GDMTGKLVGIITKRDIRFVKD--K---------- 141 (450)
T ss_pred hccccCceecC-ceEeCCCCCHHHHHHHHHHcCCCEEEEEeC----CCCCCeEEEEEEHHHHhhhhc--C----------
Confidence 34668889888 999999999999999999999999999998 4 79999999999954210 0
Q ss_pred CCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccC-CCCceecCCCCHHHHHHHHHHcCCCEEEEecC
Q 003889 660 TRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLN-PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR 738 (788)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~-~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~ 738 (788)
..+++++|+ +++.++++++++.+++++|++.+.+++||+|+
T Consensus 142 --------------------------------------~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe 183 (450)
T TIGR01302 142 --------------------------------------GKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDK 183 (450)
T ss_pred --------------------------------------CCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcC
Confidence 012444587 48899999999999999999999999999999
Q ss_pred CCeEEEEEeHhhhhhhhc
Q 003889 739 ASRVIGLITRKDLLIEDG 756 (788)
Q Consensus 739 ~g~lvGIITr~DLl~~~~ 756 (788)
+|+++|+||++|+++...
T Consensus 184 ~G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 184 NGELVGLITMKDIVKRRK 201 (450)
T ss_pred CCcEEEEEEhHHhhhccc
Confidence 999999999999998754
No 81
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.22 E-value=9.3e-11 Score=105.23 Aligned_cols=102 Identities=12% Similarity=0.288 Sum_probs=87.5
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+.++++++++.++.+.|.+.+++.+||+|+ ++++|+++.+++.+.. .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-----~~~~Giv~~~~l~~~~---~------------------------- 49 (105)
T cd04599 3 PITIDPLDSVGRAARLMEKHRIGGLPVVED-----GKLVGIITSRDVRRAH---P------------------------- 49 (105)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEEEC-----CEEEEEEehHHhhccc---c-------------------------
Confidence 677899999999999999888899999975 7999999999995421 0
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (788)
...+.++|++++.++++++++.++++.|.+.+.+++||+|+ |+++|+||++|++.
T Consensus 50 -----------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~~ 104 (105)
T cd04599 50 -----------------------NRLVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIAL 104 (105)
T ss_pred -----------------------cCCHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhcc
Confidence 00134458888999999999999999999999999999998 99999999999873
No 82
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=5.9e-11 Score=110.86 Aligned_cols=116 Identities=17% Similarity=0.250 Sum_probs=87.0
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+.+++.+.++.++++.|.+++.+.+||+|+ +++++|+++..|+......+........
T Consensus 3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~----~~~~~Giv~~~dl~~~~~~~~~~~~~~~------------------ 60 (126)
T cd04640 3 PIVIPADTSIDEALELMIKHGVRLLLVVDS----DDNFIGVITAVDLLGEEPIKRIQEGGIS------------------ 60 (126)
T ss_pred CeEECCCCcHHHHHHHHHHcCCcEEEEEcC----CCcEEEEEEHHHHhhChhhHHHHHcCCC------------------
Confidence 678899999999999999888889999997 7899999999999752100000000000
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCcee------cCCCCHHHHHHHHHHcCCCEEEEecCC-CeEEEEEe
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVV------PEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLIT 747 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV------~~~~sl~~a~~lf~~~glr~lpVVd~~-g~lvGIIT 747 (788)
. ...+++++|++++.++ .+++++.++++.|.+.+.+++||+|++ |+++|+||
T Consensus 61 -----~----------------~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it 119 (126)
T cd04640 61 -----R----------------SELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIIS 119 (126)
T ss_pred -----c----------------hheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEe
Confidence 0 0122344577655443 368999999999999999999999987 79999999
Q ss_pred Hhhhhh
Q 003889 748 RKDLLI 753 (788)
Q Consensus 748 r~DLl~ 753 (788)
++|+++
T Consensus 120 ~~di~~ 125 (126)
T cd04640 120 TSDIAR 125 (126)
T ss_pred HHHHhh
Confidence 999975
No 83
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.22 E-value=1.1e-10 Score=110.80 Aligned_cols=132 Identities=14% Similarity=0.163 Sum_probs=94.7
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+.+++++.++.++.+.|.+.+++.+||+|+ +++++|+++..|+.+.+.... ...... ..+ . +
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~----~~~~~Giv~~~dl~~~~~~~~-~~~~~~--~~~--------~---~ 64 (135)
T cd04621 3 IATVHPEHSLLHVVDEMEKNGVGRVIVVDD----NGKPVGVITYRDLAFAEFEDN-ERGLPK--KSI--------K---M 64 (135)
T ss_pred ceEeCCCCcHHHHHHHHHHcCCCcceEECC----CCCEEEEEeHHHHHHHhhccc-ccccch--hhh--------h---h
Confidence 678899999999999999999999999998 799999999999987654221 000000 000 0 0
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (788)
............ .....+++++|.+++.++.+++++.++++.|.+.+.+++||+|+ |+++|+||++|+++
T Consensus 65 ~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 65 KRKAGQKRYRYV--------KEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred hhhccccccccc--------ccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 000000000000 00122456668888899999999999999999999999999998 99999999999976
No 84
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.22 E-value=7e-11 Score=106.90 Aligned_cols=105 Identities=20% Similarity=0.320 Sum_probs=87.9
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+.+++.+.++.++.+.|.+.++..+||+|+ +++++|+++.+++.... . .
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~----~~~~~G~v~~~~l~~~~---~-----~------------------- 52 (110)
T cd04601 4 PITVSPDATVAEALELMAEYGISGLPVVDD----DGKLVGIVTNRDLRFET---D-----L------------------- 52 (110)
T ss_pred CeEeCCCCcHHHHHHHHHHcCCceEEEEcC----CCEEEEEEEhhHeeecc---c-----C-------------------
Confidence 678899999999999999889999999998 78999999999884210 0 0
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecC-CCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPE-DMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~-~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (788)
...+.++|++.+.++.+ ++++.++++.|.+.+.+.+||+|++++++|+||++|+++
T Consensus 53 -----------------------~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 53 -----------------------DKPVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred -----------------------CCCHHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 01234457777777777 999999999999999999999998899999999999975
No 85
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.22 E-value=1.8e-10 Score=104.82 Aligned_cols=110 Identities=19% Similarity=0.330 Sum_probs=90.0
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
++++++++++.++.+.|.+++++.+||+|+ ++++|+++++++...+..+. ..
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~G~i~~~~l~~~~~~~~-----~~------------------ 54 (113)
T cd04622 3 VVTVSPDDTIREAARLMREHDVGALPVCEN-----DRLVGIVTDRDIVVRAVAEG-----RD------------------ 54 (113)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEeeC-----CEEEEEEEhHHHHHHHhhcc-----CC------------------
Confidence 678899999999999999999999999986 79999999999863211111 00
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (788)
.. ..++.++|++.+.++.+++++.++++.|.+.+.+++||+|++|+++|+||++|+++
T Consensus 55 -----~~----------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 55 -----PD----------------TTTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred -----cc----------------cCCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 00 01244458888999999999999999999999999999998899999999999975
No 86
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.21 E-value=1e-10 Score=108.26 Aligned_cols=120 Identities=19% Similarity=0.292 Sum_probs=94.6
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
++++++++++.++.+.|.+.+++.+||+|+ ++++|+++.+++.+.+.+.. ..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-----~~~~G~v~~~~l~~~~~~~~--~~~~~------------------ 57 (122)
T cd04637 3 VVTVEMDDRLEEVREIFEKHKFHHLLVVED-----NELVGVISDRDYLKAISPFL--GTAGE------------------ 57 (122)
T ss_pred ceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-----CeEEEEEEHHHHHHHHHHHh--ccccc------------------
Confidence 678899999999999999999999999986 79999999999987654211 00000
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (788)
...+. .....++.++|+++++++++++++.++++.|.+.+.+.+||+|++++++|++|++|++++
T Consensus 58 ---------~~~~~------~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~~ 122 (122)
T cd04637 58 ---------TEKDL------ATLNRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLKY 122 (122)
T ss_pred ---------hHHHH------HHHHhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhhC
Confidence 00000 001124566788999999999999999999999999999999988999999999999864
No 87
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.21 E-value=1.7e-10 Score=105.05 Aligned_cols=110 Identities=16% Similarity=0.300 Sum_probs=90.1
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+++++++.+++++.+.|.+++.+.+||+|+ ++++|+|+.+|+...+.... ...
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~G~v~~~dl~~~~~~~~-~~~--------------------- 55 (113)
T cd04587 3 PATVSPTTTVQEAAKLMREKRVSCVLVMDG-----NKLVGIFTSKDIALRVVAQG-LDP--------------------- 55 (113)
T ss_pred CeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-----CEEEEEEEhHHHHHHHHhcC-CCc---------------------
Confidence 678899999999999998888889999985 79999999999974332111 000
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (788)
...++.++|++++.++.+++++.++++.|.+.+.+++||+|++++++|+||++|++.
T Consensus 56 ----------------------~~~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 56 ----------------------ESTLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred ----------------------CcCCHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 001244458888899999999999999999999999999998899999999999975
No 88
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.21 E-value=1.7e-10 Score=104.42 Aligned_cols=102 Identities=49% Similarity=0.850 Sum_probs=87.2
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
...+++++++.++.+.+.+.+++.+||+|+.. .+++++|+|+++|+.....+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~~~~G~v~~~dl~~~~~~--------------------------- 55 (105)
T cd04591 4 VVLLPEGMTVEDLESLLSTTSHNGFPVVDSTE-ESPRLVGYILRSQLVVALKN--------------------------- 55 (105)
T ss_pred eEEecccccHHHHHHHHHhCCCCCcceEcCCC-CCCEEEEEEeHHHHHHHHHH---------------------------
Confidence 67889999999999999999899999998610 03799999999999654211
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (788)
+|.+++.++++++++.++++.|.+.+.+++||++ +|+++|+||++|++++
T Consensus 56 -----------------------------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~~ 105 (105)
T cd04591 56 -----------------------------YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLKA 105 (105)
T ss_pred -----------------------------hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhcC
Confidence 3777888999999999999999999999999996 4999999999999763
No 89
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.21 E-value=1.9e-10 Score=104.45 Aligned_cols=108 Identities=19% Similarity=0.344 Sum_probs=90.2
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+.+++.+.+++++.+.+.+.+...+||+|+ ++++|+++.+++...+.... ..
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-----~~~~G~v~~~~l~~~~~~~~-~~---------------------- 54 (111)
T cd04800 3 PVTCSPDTTIREAARLMTEHRVSSLLVVDD-----GRLVGIVTDRDLRNRVVAEG-LD---------------------- 54 (111)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCeEEEEEC-----CEEEEEEEhHHHHHHHhccC-CC----------------------
Confidence 678899999999999998888889999986 79999999999976432211 00
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (788)
...++.++|++++.++++++++.++++.|.+.+.+++||+|+ |+++|++|++|+++
T Consensus 55 ----------------------~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 55 ----------------------PDTPVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred ----------------------ccCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 012244558888999999999999999999999999999998 99999999999975
No 90
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=99.20 E-value=2.4e-10 Score=126.48 Aligned_cols=185 Identities=25% Similarity=0.277 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccc--cCCCCHHH
Q 003889 75 KWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPA--AAGSGIPE 152 (788)
Q Consensus 75 ~w~~~~liGv~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~--a~GsGipe 152 (788)
.+.+.+++|+++|+++.+|.....++.+++.+.. ......++ ..++.+++.+.+ .++.|+ ..|.|-..
T Consensus 163 ~~~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~-----~~~~~~~l----~~~i~gl~~g~l-~~~~p~~~~~g~G~~~ 232 (355)
T PF00654_consen 163 ELPLFLLLGIICGLLGALFNRLLRWLRKFFRKLK-----RLKIPPIL----RPVIGGLVIGLL-AFFFPEGSVLGSGYEL 232 (355)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCHHHHH----HHHHHHHHHHHH-HHSSGG-SGSSSSTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccccchHH----HHHHHHHHHHHH-HHHHhhhcccCCcHHH
Confidence 3457899999999999999999988876544321 00001111 222334444444 456688 99999999
Q ss_pred HHHHHcCcc--cccchhhHHHHHHHHHHHHHhccCCcccccchHHHHHHHHHHHhhccCcccccccccccccc-CC--hh
Q 003889 153 IKGYLNGVD--IHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVF-RS--DR 227 (788)
Q Consensus 153 v~~~l~g~~--~~~~l~~~~l~~K~~~~~lsv~sG~svG~EGP~vhiGa~igs~l~~~~~~~~~l~~~~~~~f-~~--~~ 227 (788)
++..+++.. ..-..-.-.++.|++.+.+++++|.+.|.-.|++-+|+++|..++.. +..+ .+ ..
T Consensus 233 i~~ll~~~~~~~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~~~~-----------~~~~~~~~~~~ 301 (355)
T PF00654_consen 233 IQSLLSGSPPWFSLGSLLLLFLLKFLATALTLGSGAPGGIFFPSLFIGAALGRLFGAL-----------LGSFFPGISSV 301 (355)
T ss_dssp HHHHCTT----S-HHHHHHHHHHHHHHHHHHHHTT-BSBSHHHHHHHHHHHHHHHHHH-----------HHHH-GGG-T-
T ss_pred HHHHHcCCcchhhHHHHHHHHHHHHHHHHHhcCccCCCCEEccHHHHHHHHHHHHHHH-----------HHhhCCCcCCC
Confidence 999887631 11112234478999999999999999999999999999999999973 2211 01 11
Q ss_pred hhhhHHHHhhhhhhhhhhcCCccchhhhhhhhchhhhhhhHHHHHHHHHHHHHHHH
Q 003889 228 DRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVR 283 (788)
Q Consensus 228 ~~r~li~~GaaAGvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~ 283 (788)
+...+..+||+|.++++.|+|++.+++.+|++.+ .+...+.++++++|..+.+
T Consensus 302 ~~~~~al~G~~a~~~a~~~~Plt~~vl~~Eltg~---~~~~~p~lia~~~a~~v~~ 354 (355)
T PF00654_consen 302 DPGVYALVGMAAFLAAVTRAPLTAIVLVLELTGD---FQLLLPLLIAVAVAYLVAR 354 (355)
T ss_dssp SHHHHHHHHTTHHHHHHCS-HHHHHHHHHHHH-----GGGHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHhC
Confidence 4688999999999999999999999999999985 4556677777777766654
No 91
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.19 E-value=1.1e-10 Score=134.02 Aligned_cols=118 Identities=18% Similarity=0.287 Sum_probs=101.9
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCC
Q 003889 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGG 663 (788)
Q Consensus 584 l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~ 663 (788)
..++|+|.++ ++++++++++.++.+.|.+++++.+||+|+ +++++|+|+.+|+.... .
T Consensus 87 k~~~dim~~~-~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~----~g~lvGiVt~~DL~~~~---~-------------- 144 (486)
T PRK05567 87 KRSESGVVTD-PVTVTPDTTLAEALALMARYGISGVPVVDE----NGKLVGIITNRDVRFET---D-------------- 144 (486)
T ss_pred hhhhhcccCC-CeEeCCCCCHHHHHHHHHHhCCCEEEEEcc----CCEEEEEEEHHHhhhcc---c--------------
Confidence 3578899998 999999999999999999999999999998 78999999999994310 0
Q ss_pred CCccccccccccccCCCCCCCccccccCccccccccCcccccC-CCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeE
Q 003889 664 SKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLN-PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRV 742 (788)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~-~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~l 742 (788)
. ..+++++|+ +++.++++++++.++++.|.+.+.+.+||+|++|++
T Consensus 145 -----------------~----------------~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~l 191 (486)
T PRK05567 145 -----------------L----------------SQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRL 191 (486)
T ss_pred -----------------C----------------CCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcE
Confidence 0 012344487 678999999999999999999999999999999999
Q ss_pred EEEEeHhhhhhhhc
Q 003889 743 IGLITRKDLLIEDG 756 (788)
Q Consensus 743 vGIITr~DLl~~~~ 756 (788)
+|+||++|+++...
T Consensus 192 vGiIT~~DLl~~~~ 205 (486)
T PRK05567 192 KGLITVKDIEKAEE 205 (486)
T ss_pred EEEEEhHHhhhhhh
Confidence 99999999998754
No 92
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.19 E-value=2.4e-10 Score=102.86 Aligned_cols=110 Identities=26% Similarity=0.448 Sum_probs=92.7
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+.+++.+.++.++.+.|.+.++..+||+|+ +++++|+++++|+...+.+.. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~G~v~~~~l~~~~~~~~--~~--------------------- 55 (113)
T cd02205 3 VVTVSPDDTVAEALRLMLEHGISGLPVVDD----DGRLVGIVTERDLLRALAEGG--LD--------------------- 55 (113)
T ss_pred ceEecCCCCHHHHHHHHHhcCCceEEEECC----CCCEEEEEeHHHHHHHHHhcc--CC---------------------
Confidence 677889999999999999988899999998 689999999999987654322 00
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (788)
+ ...+.++|..++.++++++++.++++.|.+.+.+++||+|++++++|++|++|+++
T Consensus 56 ------------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 56 ------------P----------LVTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred ------------c----------cccHHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 0 00134457788899999999999999999999999999999999999999999976
No 93
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.18 E-value=2.8e-10 Score=103.52 Aligned_cols=110 Identities=17% Similarity=0.283 Sum_probs=87.5
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+.++++++++.++.+.|.+++...++|.+ +++++|+++.+|+.+.+.... .+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-----~~~~~G~v~~~dl~~~~~~~~---~~-------------------- 54 (112)
T cd04625 3 IYTVAPETLLSEAVATMAEQDLGSLVVME-----RGELVGLLTFREVLQAMAQHG---AG-------------------- 54 (112)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCeEEEee-----CCEEEEEEEHHHHHHHHHhcC---Cc--------------------
Confidence 67789999999999999877776676654 489999999999987543211 00
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (788)
.. ...+.++|++.+.++++++++.+++++|.+.+.+.+||+|+ |+++|+||++|++++
T Consensus 55 -----~~----------------~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~-~~~~Gvvt~~dl~~~ 112 (112)
T cd04625 55 -----VL----------------DTTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLDG-GTLLGVISFHDVAKA 112 (112)
T ss_pred -----hh----------------cCCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEEC-CEEEEEEEHHHhhcC
Confidence 00 01234458888889999999999999999999999999995 999999999999863
No 94
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.17 E-value=2.3e-10 Score=104.75 Aligned_cols=108 Identities=21% Similarity=0.325 Sum_probs=87.2
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+++++++++++++.+.|.+.+++.+||+|+. +++++++|+++.+|+.... . .
T Consensus 4 ~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~~~~G~v~~~dl~~~~-~-~------------------------- 55 (114)
T cd04602 4 PSVLSPDHTVADVLEIKEKKGFSGIPVTEDG-KSGGKLLGIVTSRDIDFLT-D-S------------------------- 55 (114)
T ss_pred CeEcCCCCCHHHHHHHHHHcCCCceEEeeCC-CcCCEEEEEEEhHHhhhhh-c-c-------------------------
Confidence 6788899999999999998888899999851 0147999999999985321 0 0
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecC--CCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPE--DMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~--~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl 752 (788)
..+++++|.+.+.++.. ++++.++++.|++.+.+++||+|++|+++|+||++|++
T Consensus 56 -----------------------~~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~ 112 (114)
T cd04602 56 -----------------------ETPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLK 112 (114)
T ss_pred -----------------------CCCHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhh
Confidence 01133447777777766 99999999999999999999999889999999999987
Q ss_pred h
Q 003889 753 I 753 (788)
Q Consensus 753 ~ 753 (788)
+
T Consensus 113 ~ 113 (114)
T cd04602 113 K 113 (114)
T ss_pred c
Confidence 5
No 95
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.17 E-value=3.7e-10 Score=102.59 Aligned_cols=109 Identities=18% Similarity=0.224 Sum_probs=90.1
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+++++++++++++.+.|.+++++.+||+|+ +++.|+++.+++...+.... ..
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-----~~~~G~v~~~~l~~~~~~~~-~~---------------------- 54 (111)
T cd04589 3 PLIVDASTSIRDAARLMREHGADALLVRDG-----DPRLGIVTRTDLLDAVLLDG-LP---------------------- 54 (111)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEecC-----CeEEEEEEHHHHHHHHHcCC-CC----------------------
Confidence 577899999999999999888889999986 68999999999987543221 00
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (788)
...++.++|++++..+++++++.+++++|.+.+.+.+||+|+ ++++|+||++|++++
T Consensus 55 ----------------------~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~~ 111 (111)
T cd04589 55 ----------------------SSTPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLSF 111 (111)
T ss_pred ----------------------CCCCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhcC
Confidence 011234458888899999999999999999999999999987 999999999999763
No 96
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.17 E-value=2.4e-10 Score=102.88 Aligned_cols=103 Identities=23% Similarity=0.426 Sum_probs=88.1
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+++++.+.+++++.+.|.+.+...+||+|+ ++++|+++..+|... ..
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-----~~~~g~v~~~~l~~~---~~------------------------- 50 (107)
T cd04610 4 VITVSPDNTVKDVIKLIKETGHDGFPVVDN-----GKVVGIVSARDLLGK---DP------------------------- 50 (107)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCeeeEeEC-----CEEEEEEEHHHhhcc---Cc-------------------------
Confidence 778899999999999998888888999985 799999999998531 00
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (788)
..++.++|++.+.++.+++++.++++.|.+.+.+.+||+|++|+++|+||++|+++
T Consensus 51 -----------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 51 -----------------------DETVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred -----------------------cccHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 01234458888899999999999999999999999999999899999999999985
No 97
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.17 E-value=1.7e-10 Score=135.13 Aligned_cols=169 Identities=18% Similarity=0.253 Sum_probs=114.7
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccc---cCCCCCCCC-
Q 003889 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVD---FQHSPLPCD- 659 (788)
Q Consensus 584 l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~---~~~~~~~~~- 659 (788)
.+++|+|.++ ++++++++++.++++.|.+++++.+||+|+ +++++|+|+.+|+.+.+.+..- +.....+..
T Consensus 68 ~~V~dim~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~----~g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~ 142 (546)
T PRK14869 68 PQVRDLEIDK-PVTVSPDTSLKEAWNLMDENNVKTLPVVDE----EGKLLGLVSLSDLARAYMDILDPEILSKSPTSLEN 142 (546)
T ss_pred CcHHHhcCCC-CcEECCCCcHHHHHHHHHHcCCCEEEEEcC----CCEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHH
Confidence 6899999998 999999999999999999999999999998 7899999999999886554220 000000000
Q ss_pred ------C---CCCCCcc--ccc----------cccccccC-----CC-------------------CCCCcc-c------
Q 003889 660 ------T---RGGSKPI--SHS----------FSEFVKPA-----SS-------------------KGLSID-D------ 687 (788)
Q Consensus 660 ------~---~~~~~~~--~~~----------~~~~~~~~-----~~-------------------~~~~i~-d------ 687 (788)
. .++.+.. ..+ +..+.++. .+ .+.++. +
T Consensus 143 i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~ 222 (546)
T PRK14869 143 IIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAK 222 (546)
T ss_pred HHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHH
Confidence 0 0000000 000 00000000 00 000000 0
Q ss_pred ---cc--cC-------ccccccccCcccccC-CCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhh
Q 003889 688 ---IH--LS-------SDDMEMYIDLGPFLN-PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (788)
Q Consensus 688 ---i~--~~-------~~~~~~~idl~~~m~-~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (788)
+- .+ ...+....+++++|+ +++.++++++++.++.+.|.+.+.+++||+|++|+++|+||++|+++.
T Consensus 223 ~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~ 302 (546)
T PRK14869 223 ENGVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSP 302 (546)
T ss_pred hCCCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhcc
Confidence 00 00 011334578899999 899999999999999999999999999999999999999999999986
Q ss_pred hcC
Q 003889 755 DGE 757 (788)
Q Consensus 755 ~~~ 757 (788)
..+
T Consensus 303 ~~~ 305 (546)
T PRK14869 303 VRK 305 (546)
T ss_pred ccC
Confidence 554
No 98
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.17 E-value=1.6e-10 Score=122.88 Aligned_cols=115 Identities=14% Similarity=0.206 Sum_probs=96.5
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCC
Q 003889 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRG 662 (788)
Q Consensus 583 ~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~ 662 (788)
.++++|+|.+++++++++++++.++.+.|.+.+++.+||+|+ +++++|+|+.+|+.+.+....
T Consensus 154 ~~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~----~g~~~Givt~~dl~~~~~~~~------------- 216 (268)
T TIGR00393 154 LVKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE----NNQLVGVFTDGDLRRALLGGG------------- 216 (268)
T ss_pred hhhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC----CCCEEEEEEcHHHHHHHhcCC-------------
Confidence 579999997532678899999999999999999999999998 789999999999987543211
Q ss_pred CCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeE
Q 003889 663 GSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRV 742 (788)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~l 742 (788)
+. ..+++++|.+++.++.+++++.+++++|.+.+.+++||+|++|++
T Consensus 217 -----------------~~----------------~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l 263 (268)
T TIGR00393 217 -----------------SL----------------KSEVRDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKV 263 (268)
T ss_pred -----------------cc----------------cCcHHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeE
Confidence 00 112344588889999999999999999999999999999998999
Q ss_pred EEEEe
Q 003889 743 IGLIT 747 (788)
Q Consensus 743 vGIIT 747 (788)
+|+|+
T Consensus 264 ~GvI~ 268 (268)
T TIGR00393 264 LGVLH 268 (268)
T ss_pred EEEEC
Confidence 99985
No 99
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.16 E-value=3.3e-10 Score=102.33 Aligned_cols=108 Identities=25% Similarity=0.344 Sum_probs=87.9
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+.++++++++.++.+.|.+.+++.+||+|+ ++++|+++.+|+.+.+.... ..
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~G~v~~~dl~~~~~~~~--~~--------------------- 54 (110)
T cd04609 3 VVSVAPDDTVSQAIERMREYGVSQLPVVDD-----GRVVGSIDESDLLDALIEGK--AK--------------------- 54 (110)
T ss_pred cEEECCCCcHHHHHHHHHHcCCceeeEeeC-----CeeEEEEeHHHHHHHHhccc--cc---------------------
Confidence 678899999999999999999999999986 78999999999987653321 00
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (788)
...++.++|++++.++++++++.++.++|.+ . ..+||+|++|+++|+||++|++++
T Consensus 55 ----------------------~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~~ 110 (110)
T cd04609 55 ----------------------FSLPVREVMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLKY 110 (110)
T ss_pred ----------------------cCcCHHHHhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhcC
Confidence 0012344588888899999999999999998 3 347899888999999999999864
No 100
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=99.16 E-value=4.7e-10 Score=127.01 Aligned_cols=181 Identities=23% Similarity=0.226 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccCCCCHHHHHHH
Q 003889 77 FFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGY 156 (788)
Q Consensus 77 ~~~~liGv~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~ 156 (788)
...+++|++.|+.+.++........+++. + ...+..+.. .+.+++.+ +...+.|+..|.|...+...
T Consensus 236 ~~~~~lGii~G~~g~~~~~~~~~~~~~~~--------~-~~~~~~~~~---~~~g~l~g-~~~l~~P~~lg~G~~~~~~~ 302 (443)
T COG0038 236 LLYLVLGIIAGLFGVLLSRLLALSRRFFR--------R-LPLPPLLRP---ALGGLLVG-ALGLLFPEVLGNGYGLIQLA 302 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------c-CcchHHHHH---HHHHHHHH-HHHHhchhhhCCCccHHHHH
Confidence 36789999999999888777744422211 1 111211121 22333333 44567899999999998888
Q ss_pred HcCcccccch-hhHHHHHHHHHHHHHhccCCcccccchHHHHHHHHHHHhhccCccccccccccccccC-ChhhhhhHHH
Q 003889 157 LNGVDIHGIL-LFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFR-SDRDRRDLVT 234 (788)
Q Consensus 157 l~g~~~~~~l-~~~~l~~K~~~~~lsv~sG~svG~EGP~vhiGa~igs~l~~~~~~~~~l~~~~~~~f~-~~~~~r~li~ 234 (788)
.++... .. ..-.++.|++.+.+|++||.+.|...|++-+|+++|..+++... ..+. +..+.-.++.
T Consensus 303 ~~~~~~--~~~l~~l~~~K~l~t~~s~gSG~~GGif~Psl~iGa~lG~~~g~~~~----------~~~~~~~~~~~~~al 370 (443)
T COG0038 303 LAGEGG--LLVLLLLFLLKLLATLLSYGSGAPGGIFAPSLFIGAALGLAFGALLG----------LLFPPSILEPGLFAL 370 (443)
T ss_pred HccCcc--HHHHHHHHHHHHHHHHHHHhcCCCcceehHHHHHHHHHHHHHHHHHH----------hhcCccccchHHHHH
Confidence 876322 22 35578999999999999999999999999999999999997321 1111 1344558999
Q ss_pred HhhhhhhhhhhcCCccchhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHHh
Q 003889 235 CGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSA 285 (788)
Q Consensus 235 ~GaaAGvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~ 285 (788)
+||+|.++++-|+|++++++++|++.. .++.+..+.+|++++.+.+..
T Consensus 371 ~Gm~a~la~~~~aPlta~vlv~EmTg~---~~~~l~ll~a~~ia~~~~~~~ 418 (443)
T COG0038 371 LGMAAFLAATTRAPLTAIVLVLEMTGN---YQLLLPLLIACLIAYLVSRLL 418 (443)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHhCC---cchHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999987 467778888888888887654
No 101
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.16 E-value=2.7e-10 Score=104.99 Aligned_cols=118 Identities=21% Similarity=0.324 Sum_probs=92.8
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+.+++++.++.++.+.+.+++++.+||+|+ +++++|+++.+++.+...... ....
T Consensus 3 ~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~----~~~~~G~v~~~~l~~~~~~~~--~~~~------------------- 57 (121)
T cd04584 3 VVTITPTTTIAEALELMREHKIRHLPVVDE----EGRLVGIVTDRDLRDASPSPF--TTLS------------------- 57 (121)
T ss_pred CEEECCCCCHHHHHHHHHHcCCCcccEECC----CCcEEEEEEHHHHHHHhhhhc--ccch-------------------
Confidence 678899999999999999999999999998 789999999999976432211 0000
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (788)
..+. ......+++++|++.+.++.+++++.++++.|.+.+.+++||+|+ |+++|++|.+|+++
T Consensus 58 ----------~~~~-----~~~~~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 58 ----------EHEL-----YLLLKMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred ----------hhhh-----hhhcCcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 0000 000123355668888999999999999999999999999999998 99999999999976
No 102
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.16 E-value=1.8e-10 Score=131.57 Aligned_cols=116 Identities=11% Similarity=0.144 Sum_probs=96.8
Q ss_pred ccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCcccc
Q 003889 590 CGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISH 669 (788)
Q Consensus 590 M~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~ 669 (788)
|.++ ++++++++++.++.+.|.+++++.+||+|+.. .+++++|+|+.+|+.... .
T Consensus 106 mi~d-pvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~-~~GklvGIVT~~DL~~v~---~-------------------- 160 (505)
T PLN02274 106 FVSD-PVVKSPSSTISSLDELKASRGFSSVCVTETGT-MGSKLLGYVTKRDWDFVN---D-------------------- 160 (505)
T ss_pred ccCC-CeeeCCCCcHHHHHHHHHhcCCceEEEEeCCC-cCCeEEEEEEHHHHhhcc---c--------------------
Confidence 6677 89999999999999999999999999998610 037999999999995321 0
Q ss_pred ccccccccCCCCCCCccccccCccccccccCcccccCCC--CceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEe
Q 003889 670 SFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPS--PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLIT 747 (788)
Q Consensus 670 ~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~--p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIIT 747 (788)
. ..+++++|++. ..++++++++.+++++|.+.+.+.+||+|++++++|+||
T Consensus 161 -----------~----------------~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvIT 213 (505)
T PLN02274 161 -----------R----------------ETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVT 213 (505)
T ss_pred -----------c----------------CCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEE
Confidence 0 11234458766 679999999999999999999999999998899999999
Q ss_pred HhhhhhhhcC
Q 003889 748 RKDLLIEDGE 757 (788)
Q Consensus 748 r~DLl~~~~~ 757 (788)
++|+++....
T Consensus 214 r~DIlk~~~~ 223 (505)
T PLN02274 214 RTDVKRVKGY 223 (505)
T ss_pred HHHHHHHhhC
Confidence 9999998764
No 103
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.16 E-value=1.6e-10 Score=104.77 Aligned_cols=102 Identities=24% Similarity=0.314 Sum_probs=84.9
Q ss_pred ecCcccHHHHHHHHhhCCC-----CeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccc
Q 003889 598 LPRIIKVADVVSILRTNKH-----NGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFS 672 (788)
Q Consensus 598 l~~~~tv~~a~~~L~~~~~-----~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (788)
+++++++.++.+.|.++++ ..+||+|+ +++++|+|+.+++... ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~----~~~~~G~v~~~~l~~~---~~----------------------- 51 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDE----EGRLLGVVSLRDLLLA---DP----------------------- 51 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECC----CCCEEEEEEHHHHhcC---CC-----------------------
Confidence 4678899999999987763 67999987 6899999999888431 00
Q ss_pred cccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhh
Q 003889 673 EFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752 (788)
Q Consensus 673 ~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl 752 (788)
..++.++|++++.++.+++++.++++.|.+.+.+++||+|++++++|+||++|++
T Consensus 52 -------------------------~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll 106 (109)
T cd04606 52 -------------------------DTPVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVI 106 (109)
T ss_pred -------------------------cchHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhh
Confidence 0123445778889999999999999999999999999999889999999999998
Q ss_pred hh
Q 003889 753 IE 754 (788)
Q Consensus 753 ~~ 754 (788)
++
T Consensus 107 ~~ 108 (109)
T cd04606 107 DV 108 (109)
T ss_pred hh
Confidence 75
No 104
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.16 E-value=5.5e-10 Score=102.21 Aligned_cols=113 Identities=19% Similarity=0.355 Sum_probs=95.4
Q ss_pred hhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCcc
Q 003889 588 EACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPI 667 (788)
Q Consensus 588 diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~ 667 (788)
++|.++ ++++.++.++.++...|.+++...+||+++ ++++|+++.+|+.+.+.... .
T Consensus 3 ~~~~~~-~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-----~~l~Giit~~di~~~~~~~~-----~------------ 59 (117)
T COG0517 3 DIMTKD-VITVKPDTSVRDALLLMSENGVSAVPVVDD-----GKLVGIITERDILRALAAGG-----K------------ 59 (117)
T ss_pred ccccCC-CEEECCCCcHHHHHHHHHHcCCCEEEEeeC-----CEEEEEEEHHHHHHHHhccC-----C------------
Confidence 445566 899999999999999999999999999986 48999999999988764432 0
Q ss_pred ccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHH-cCCCEEEEecCCC-eEEEE
Q 003889 668 SHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQ-LGLRHIFVVPRAS-RVIGL 745 (788)
Q Consensus 668 ~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~-~glr~lpVVd~~g-~lvGI 745 (788)
. . ..+.++|.+++.++.+++++.++.+.|.+ .+.+++||+|+++ +++|+
T Consensus 60 -------------~--~--------------~~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGi 110 (117)
T COG0517 60 -------------R--L--------------LPVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGI 110 (117)
T ss_pred -------------c--c--------------ccHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEE
Confidence 0 0 02444588889999999999999999999 6999999999986 99999
Q ss_pred EeHhhhh
Q 003889 746 ITRKDLL 752 (788)
Q Consensus 746 ITr~DLl 752 (788)
+|++|++
T Consensus 111 vt~~di~ 117 (117)
T COG0517 111 ITLSDIL 117 (117)
T ss_pred EEHHHcC
Confidence 9999974
No 105
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.15 E-value=1.5e-10 Score=132.24 Aligned_cols=120 Identities=18% Similarity=0.218 Sum_probs=100.1
Q ss_pred chhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCC
Q 003889 585 TAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGS 664 (788)
Q Consensus 585 ~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~ 664 (788)
++++.|..+ ++++++++++.++.++|++++++.+||+|+.. .+++++|+|+.+|+... +.
T Consensus 97 ~~e~g~i~d-pvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~-~~gkLvGIVt~~DL~~~---~~--------------- 156 (495)
T PTZ00314 97 RFENGFIMD-PYVLSPNHTVADVLEIKEKKGFSSILITVDGK-VGGKLLGIVTSRDIDFV---KD--------------- 156 (495)
T ss_pred ccccccccC-CeecCCCCCHHHHHHHHHHcCCcEEEEEeCCc-cCCeEEEEEEHHHHhhc---cc---------------
Confidence 366778888 89999999999999999999999999998710 13799999999998521 00
Q ss_pred CccccccccccccCCCCCCCccccccCccccccccCcccccCC--CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeE
Q 003889 665 KPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRV 742 (788)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~--~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~l 742 (788)
. ..+++++|++ ++.++++++++.++.++|.+++.+.+||+|+++++
T Consensus 157 ----------------~----------------~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~l 204 (495)
T PTZ00314 157 ----------------K----------------STPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGEL 204 (495)
T ss_pred ----------------C----------------CCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcE
Confidence 0 1224445877 78899999999999999999999999999999999
Q ss_pred EEEEeHhhhhhhhc
Q 003889 743 IGLITRKDLLIEDG 756 (788)
Q Consensus 743 vGIITr~DLl~~~~ 756 (788)
+|+||++|+++...
T Consensus 205 iGIIT~~DIl~~~~ 218 (495)
T PTZ00314 205 VALVSRSDLKKNRG 218 (495)
T ss_pred EEEEEehHhhhccc
Confidence 99999999998754
No 106
>PRK03655 putative ion channel protein; Provisional
Probab=99.15 E-value=8.1e-10 Score=123.79 Aligned_cols=172 Identities=13% Similarity=0.069 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccCCCCHHHHH
Q 003889 75 KWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIK 154 (788)
Q Consensus 75 ~w~~~~liGv~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~ 154 (788)
.|.+.+++|+++|+++.+|.......+++.... ..+++. ..+++++.+.+.....|...|+|..+++
T Consensus 222 ~~~~~l~lgi~~gl~G~lf~~~~~~~~~~~~~~---------~~p~~~----~~lgGl~vg~l~l~~~~~~~g~Gy~~i~ 288 (414)
T PRK03655 222 DILSGAIVAAIAIAAGMVAVWCLPRLHALMHRL---------KNPVLV----LGIGGFILGILGVIGGPLTLFKGLDEMQ 288 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------ccchHH----HHHHHHHHHHHHHHhCCccccCCHHHHH
Confidence 455778899999999999987766555432211 111111 1244455555555556888999999999
Q ss_pred HHHcCcccccchhhHHHHHHHHHHHHHhccCCcccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhHHH
Q 003889 155 GYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVT 234 (788)
Q Consensus 155 ~~l~g~~~~~~l~~~~l~~K~~~~~lsv~sG~svG~EGP~vhiGa~igs~l~~~~~~~~~l~~~~~~~f~~~~~~r~li~ 234 (788)
..+++.+.+-..-.-..+.|++.+.+|++||.+.|...|+.-+||++|+.+++. + ++.+....++
T Consensus 289 ~~~~~~~~~~~~ll~l~l~K~lat~ls~~sG~~GGiF~PsL~iGA~~G~~~~~l-----------~----p~~~~~~~v~ 353 (414)
T PRK03655 289 QMAANQAFSASDYFLLAVVKLAALVVAAASGFRGGRIFPAVFVGVALGLMLHAH-----------V----PAVPAAITVS 353 (414)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHHHHHccCCCCceehHHHHHHHHHHHHHHHh-----------c----cCCChHHHHH
Confidence 888762222111112467999999999999999999999999999999999872 1 2345677889
Q ss_pred Hhhhhhhhhhhc----CCccchhhhhhhhchhhhhhhHHHHHHHHHHHHHHH
Q 003889 235 CGCAAGVAAAFR----APVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVV 282 (788)
Q Consensus 235 ~GaaAGvaaaF~----APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~ 282 (788)
+||+|.++++-+ +|+++++.++|++ ..+.+.++++++++.
T Consensus 354 ~~m~a~la~vtr~p~~sp~ta~viv~em~--------~~~l~~~~~~~~~~~ 397 (414)
T PRK03655 354 CAILGIVLVVTRDGWLSLFMAAVVVPDTT--------LLPLLCIVMLPAWLL 397 (414)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHhcch--------HHHHHHHHHHHHHHH
Confidence 999999999999 6999999999997 345566666666654
No 107
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.15 E-value=7.1e-10 Score=100.80 Aligned_cols=109 Identities=18% Similarity=0.380 Sum_probs=89.5
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+.+++++.++.++.+.|.+++++.+||+|+ + +++|+++..|+...+..+. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~-~~~G~v~~~dl~~~~~~~~-~~---------------------- 54 (112)
T cd04802 3 VITVDPDTTVYEAANIMTENNIGRLIVVDN----E-KPVGIITERDLVKKVVSRN-LK---------------------- 54 (112)
T ss_pred cEEECCCCCHHHHHHHHHHCCCCEEEEEEC----C-EEEEEEEHHHHHHHHhhcc-CC----------------------
Confidence 677899999999999999988999999997 4 9999999999987543211 00
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (788)
. ....+.++|++++.++.+++++.++++.|.+.+.+.+||+|++ +++|+||++|+++
T Consensus 55 -----~----------------~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 55 -----P----------------REVPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred -----c----------------ccCCHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 0 0112344588888899999999999999999999999999984 9999999999975
No 108
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.14 E-value=3.5e-10 Score=104.36 Aligned_cols=119 Identities=18% Similarity=0.252 Sum_probs=92.5
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+++++++.++.++.+.|.+.++..+||+|+ ++++|+++.+++.+.+.... ..+..
T Consensus 3 ~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-----~~~~G~v~~~~l~~~~~~~~--~~~~~------------------ 57 (121)
T cd04633 3 VITVSPDDRVSHARRLMLDHDISRLPVIEG-----GKLVGIVTEKDIADALRSFR--PLVRD------------------ 57 (121)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCeeEEEEC-----CEEEEEEchHHHHHhhhhhh--hcccc------------------
Confidence 678899999999999999888899999986 79999999999977544211 00000
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (788)
... +......++.++|++++.++++++++.+++++|.+.+.+++||+|+ |+++|+||++|++++
T Consensus 58 -----------~~~----~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~~ 121 (121)
T cd04633 58 -----------RHQ----ERRIRNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILRY 121 (121)
T ss_pred -----------hhh----hhhhhccCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhcC
Confidence 000 0000112345568888999999999999999999999999999998 999999999999863
No 109
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.14 E-value=5.4e-10 Score=100.54 Aligned_cols=100 Identities=17% Similarity=0.175 Sum_probs=85.7
Q ss_pred EEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCcccccccccc
Q 003889 596 VSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFV 675 (788)
Q Consensus 596 v~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (788)
+++++++++.++.+.+.+.++..+||+|+ ++++|+++.+|+.+.. .
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-----~~~~G~v~~~~l~~~~---~-------------------------- 49 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-----NKFLGAVYLKDIENAT---Y-------------------------- 49 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC-----CEEEEEEEHHHHhhhc---c--------------------------
Confidence 56789999999999999999999999985 7999999999985421 0
Q ss_pred ccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 003889 676 KPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (788)
Q Consensus 676 ~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (788)
.++.++|.+.+.++++++++.++++.|.+.+.+.+||+|+ |+++|+||++|+++
T Consensus 50 -----------------------~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~iGvit~~dl~~ 103 (104)
T cd04594 50 -----------------------GDVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVDD-GKFKGIVTLDSILD 103 (104)
T ss_pred -----------------------cchhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEEC-CEEEEEEEHHHhhc
Confidence 0123347788899999999999999999999999999985 99999999999975
No 110
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=99.13 E-value=7.7e-10 Score=125.67 Aligned_cols=194 Identities=16% Similarity=0.110 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccCCCCHHHH
Q 003889 74 VKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEI 153 (788)
Q Consensus 74 ~~w~~~~liGv~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev 153 (788)
..+.+.+++|+++|+++.+|+....++++++.... ...+.++.. ++.+++.+.+ .++.|+..|+|-..+
T Consensus 205 ~~l~~~i~lGi~~Gl~g~lf~~~~~~~~~~~~~~~-------~~~~~~~~~---~l~~l~~~~l-~~~~p~~~~~g~~~i 273 (445)
T cd03684 205 FELIPFILLGIFGGLYGAFFIKANIKWARFRKKSL-------LKRYPVLEV---LLVALITALI-SFPNPYTRLDMTELL 273 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cchhHHHHH---HHHHHHHHHH-HhChHHHccchhhHH
Confidence 34557899999999999999999988876653321 000111111 2333344444 456799999997777
Q ss_pred HHHHcCccc---------------cc-chh----hHHHHHHHHHHHHHhccCCcccccchHHHHHHHHHHHhhccCcccc
Q 003889 154 KGYLNGVDI---------------HG-ILL----FRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKY 213 (788)
Q Consensus 154 ~~~l~g~~~---------------~~-~l~----~~~l~~K~~~~~lsv~sG~svG~EGP~vhiGa~igs~l~~~~~~~~ 213 (788)
+..+++... .. ... .-.++.|++.+.+++++|.+.|...|+.-+||++|..++...+...
T Consensus 274 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~K~~~t~lt~gsG~~GG~f~P~l~iGA~~G~~~g~~~~~~~ 353 (445)
T cd03684 274 ELLFNECEPGDDNSLCCYRDPPAGDGVYKALWSLLLALIIKLLLTIFTFGIKVPAGIFVPSMAVGALFGRIVGILVEQLA 353 (445)
T ss_pred HHHHhcCCCcccccccccccccCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcceeHHHHHHHHHHhHHHHHHHHHHH
Confidence 776654210 00 111 2246899999999999999999999999999999999987321100
Q ss_pred cccccccc---ccC------ChhhhhhHHHHhhhhhhhhhhcCCccchhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHH
Q 003889 214 HLRYRWLQ---VFR------SDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRS 284 (788)
Q Consensus 214 ~l~~~~~~---~f~------~~~~~r~li~~GaaAGvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~ 284 (788)
. +.. +|. ...+.-.++.+||||-++++.|+|++++++++|++.+ .+.+.+.++++++|..+.+.
T Consensus 354 ~----~~p~~~~~~~~~~~~~~~~~~~~alvGmaa~~a~~~raPlt~ivlv~ElTg~---~~~l~pl~ia~~iA~~vs~~ 426 (445)
T cd03684 354 Y----SYPDSIFFACCTAGPSCITPGLYAMVGAAAFLGGVTRMTVSLVVIMFELTGA---LNYILPLMIAVMVSKWVADA 426 (445)
T ss_pred h----hCCcccccccccCCCCccCchHHHHHHHHHHhcchhccchhhhheeeeccCC---cccHHHHHHHHHHHHHHHHH
Confidence 0 000 010 1234467899999999999999999999999999986 45677888888888887765
Q ss_pred h
Q 003889 285 A 285 (788)
Q Consensus 285 ~ 285 (788)
+
T Consensus 427 ~ 427 (445)
T cd03684 427 I 427 (445)
T ss_pred h
Confidence 4
No 111
>PRK11573 hypothetical protein; Provisional
Probab=99.11 E-value=5.9e-10 Score=125.07 Aligned_cols=134 Identities=19% Similarity=0.178 Sum_probs=109.2
Q ss_pred hcccchhhhccC-CceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCC
Q 003889 581 MRQMTAKEACGA-QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCD 659 (788)
Q Consensus 581 l~~l~v~diM~~-~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~ 659 (788)
+++.+|+|+|++ .++++++.+.+++++.+.+.+++|+.+||.++. .+..+|+|..+|++..+.++. .
T Consensus 184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~---~D~IiGiv~~kDll~~~~~~~-----~---- 251 (413)
T PRK11573 184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDS---LDDAISMLRVREAYRLMTEKK-----E---- 251 (413)
T ss_pred cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCC---CCceEEEEEHHHHHHHhhccC-----c----
Confidence 568899999987 239999999999999999999999999999862 478999999999976432211 0
Q ss_pred CCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCC
Q 003889 660 TRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA 739 (788)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~ 739 (788)
... .++.+++ ++|+.|++++++.++++.|++.+.+...|+|+.
T Consensus 252 -----------------------~~~-------------~~l~~~~-r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEy 294 (413)
T PRK11573 252 -----------------------FTK-------------ENMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEY 294 (413)
T ss_pred -----------------------CCH-------------HHHHhhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecC
Confidence 000 0122233 578899999999999999999999999999999
Q ss_pred CeEEEEEeHhhhhhhhcCCCccch
Q 003889 740 SRVIGLITRKDLLIEDGEDSTTVE 763 (788)
Q Consensus 740 g~lvGIITr~DLl~~~~~~~~~~~ 763 (788)
|...|+||.+|+++....+..++.
T Consensus 295 G~~~GiVTleDilEeivGei~de~ 318 (413)
T PRK11573 295 GDIQGLVTVEDILEEIVGDFTTSM 318 (413)
T ss_pred CCeEEEeeHHHHHHHHhCCCCccc
Confidence 999999999999999988775543
No 112
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.09 E-value=9.2e-10 Score=99.16 Aligned_cols=103 Identities=23% Similarity=0.368 Sum_probs=87.6
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+.+++.+.++.++.+.+.+.+++.+||+|+ +++++|+++++++... ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~g~v~~~~l~~~---~~------------------------- 50 (106)
T cd04638 3 VVYVTLPGTRDDVLELLKEYKVSGVPVVKK----SGELVGIITRKDLLRN---PE------------------------- 50 (106)
T ss_pred cEEECCCCCHHHHHHHHHHcCCCeEEEEcC----CCcEEEEEEHHHHHhc---cc-------------------------
Confidence 678888999999999999888999999998 6899999999998531 00
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (788)
..++.++|++.+.++.+++++.++++.|++.+.+.+||+|+ |+++|+||++|+++
T Consensus 51 -----------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~ 105 (106)
T cd04638 51 -----------------------EEQLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR 105 (106)
T ss_pred -----------------------cchHHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 00133447788899999999999999999999999999996 89999999999875
No 113
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.08 E-value=1.3e-09 Score=104.25 Aligned_cols=135 Identities=19% Similarity=0.293 Sum_probs=95.2
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
++++++++++.++.+.|.+++++.+||+|+ ++++|++++.++.+.+.... ...... .. +....+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-----~~~~G~v~~~dl~~~~~~~~-~~~~~~--~~--------~~~~~~ 66 (143)
T cd04634 3 PITCNADDTISDAARLLRENKISGAPVLDG-----GKLVGIVSESDILKLLVTHD-PSGNLW--LP--------SPLELI 66 (143)
T ss_pred cEEecCCCCHHHHHHHHHHcCCCcceEeEC-----CeEEEEecHHHHHHHHHhcc-Cccccc--cC--------Ccceee
Confidence 778899999999999999999999999986 69999999999987664322 000000 00 000000
Q ss_pred cccCCCCCCCccccc-cCc---c-ccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHh
Q 003889 675 VKPASSKGLSIDDIH-LSS---D-DMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRK 749 (788)
Q Consensus 675 ~~~~~~~~~~i~di~-~~~---~-~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~ 749 (788)
. ..+.++. ..+ . +.....++.++|++.+.++.+++++.++++.|.+.+.+++||+|+ ++++|+||++
T Consensus 67 ~-------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~ 138 (143)
T cd04634 67 E-------LPLREFINWEETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRG 138 (143)
T ss_pred e-------ccchheeehHHHHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHH
Confidence 0 0011100 000 0 000123566778889999999999999999999999999999998 9999999999
Q ss_pred hhhh
Q 003889 750 DLLI 753 (788)
Q Consensus 750 DLl~ 753 (788)
|+++
T Consensus 139 dl~~ 142 (143)
T cd04634 139 DIIE 142 (143)
T ss_pred Hhhc
Confidence 9874
No 114
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.06 E-value=1.3e-09 Score=100.24 Aligned_cols=112 Identities=24% Similarity=0.374 Sum_probs=88.1
Q ss_pred eEEecCcccHHHHHHHHhhCC-CCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCcccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNK-HNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSE 673 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~-~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (788)
+.++++++++.++.+.+++.+ ++.+||+|+ ++++|+++.+++.+.+.+.. ..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-----~~~~G~v~~~~l~~~~~~~~--~~~~------------------ 57 (119)
T cd04598 3 APTVSPDTTVNDVLERFERDPDLSALAVVDD-----GRPVGLIMREALMELLSTPY--GRAL------------------ 57 (119)
T ss_pred cCccCCCCcHHHHHHHHHhCCCccEEEEEEC-----CeeEEEEEHHHHHHHHhchh--hHHH------------------
Confidence 567889999999999998876 889999986 79999999999976543211 0000
Q ss_pred ccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEE---EEecCCCeEEEEEeHhh
Q 003889 674 FVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHI---FVVPRASRVIGLITRKD 750 (788)
Q Consensus 674 ~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~l---pVVd~~g~lvGIITr~D 750 (788)
....++.++|++++.++.+++++.++++.|.+.+.+++ +|+|++|+++|+||++|
T Consensus 58 ----------------------~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~d 115 (119)
T cd04598 58 ----------------------YGKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKD 115 (119)
T ss_pred ----------------------HcCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHH
Confidence 00112445588899999999999999999999886543 68888899999999999
Q ss_pred hhh
Q 003889 751 LLI 753 (788)
Q Consensus 751 Ll~ 753 (788)
+++
T Consensus 116 i~~ 118 (119)
T cd04598 116 LLR 118 (119)
T ss_pred Hhc
Confidence 975
No 115
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.02 E-value=1.2e-09 Score=120.63 Aligned_cols=126 Identities=14% Similarity=0.167 Sum_probs=108.7
Q ss_pred hcccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCC
Q 003889 581 MRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDT 660 (788)
Q Consensus 581 l~~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~ 660 (788)
+-..+++++|+.+ ++++++..++.++.+.|.+.+.+...++|+ ++.+.|+||++|+....-.+. +
T Consensus 146 ~~~trv~~~~~~~-~~~v~~~~~i~~aa~km~~~gv~s~v~l~~----~~~~~GIvT~~dl~~~v~~~g-----~----- 210 (610)
T COG2905 146 FILTRVGEVKTLP-AVTVSPQASIQDAARKMKDEGVSSLVVLDD----SGPLLGIVTRKDLRSRVIADG-----R----- 210 (610)
T ss_pred HHHHHHHHHhcCC-CcccCccCcHHHHHHHHHhcCCCeEEEEcC----CCCccceeehHHHHHHHHhcC-----C-----
Confidence 3456789999999 999999999999999999999998889988 789999999999987654322 0
Q ss_pred CCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCC
Q 003889 661 RGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRAS 740 (788)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g 740 (788)
+ ...++.++|+.+|++|..++.+.+|+-+|.+.+++|+||+++ |
T Consensus 211 -------------------~----------------~~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e~-g 254 (610)
T COG2905 211 -------------------S----------------KTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTED-G 254 (610)
T ss_pred -------------------C----------------cccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeecC-C
Confidence 1 123455669999999999999999999999999999999987 9
Q ss_pred eEEEEEeHhhhhhhhcC
Q 003889 741 RVIGLITRKDLLIEDGE 757 (788)
Q Consensus 741 ~lvGIITr~DLl~~~~~ 757 (788)
+++||||.+||++....
T Consensus 255 q~~Gilt~~dIl~l~s~ 271 (610)
T COG2905 255 QPLGILTLTDILRLFSQ 271 (610)
T ss_pred eeeEEeeHHHHHHhhCC
Confidence 99999999999998664
No 116
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.01 E-value=2.8e-09 Score=120.73 Aligned_cols=133 Identities=27% Similarity=0.359 Sum_probs=110.2
Q ss_pred hcccchhhhccC-CceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCC
Q 003889 581 MRQMTAKEACGA-QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCD 659 (788)
Q Consensus 581 l~~l~v~diM~~-~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~ 659 (788)
+.+.+|+++|++ .++.+++.+.+++++.+.+.+++|+.+||+++. .+.++|++..+||+....+..
T Consensus 203 l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~---~D~iiGiv~~Kdll~~~~~~~---------- 269 (429)
T COG1253 203 LDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGD---LDNIIGIVHVKDLLRALLDGQ---------- 269 (429)
T ss_pred cCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCC---CCcEEEEEEHHHHHHHHhcCc----------
Confidence 578899999987 228999999999999999999999999999942 578999999999987654432
Q ss_pred CCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCC
Q 003889 660 TRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA 739 (788)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~ 739 (788)
. + .+.+..+ ++|..|++++++.++++.|++.+.+...|+|+.
T Consensus 270 ------------------------~--~-----------~~~~~~~-~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEy 311 (429)
T COG1253 270 ------------------------S--D-----------LDLRVLV-RPPLFVPETLSLSDLLEEFREERTHMAIVVDEY 311 (429)
T ss_pred ------------------------c--c-----------cchhhcc-cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcC
Confidence 0 0 0001112 278899999999999999999999999999999
Q ss_pred CeEEEEEeHhhhhhhhcCCCccchh
Q 003889 740 SRVIGLITRKDLLIEDGEDSTTVEL 764 (788)
Q Consensus 740 g~lvGIITr~DLl~~~~~~~~~~~~ 764 (788)
|.+.|+||.+|+++....+..++.+
T Consensus 312 G~~~GlVTleDIiEeIvGei~de~d 336 (429)
T COG1253 312 GGVEGLVTLEDIIEEIVGEIPDEHD 336 (429)
T ss_pred CCeEEEeEHHHHHHHHhCCCcCccc
Confidence 9999999999999999987765554
No 117
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.00 E-value=7.5e-10 Score=123.58 Aligned_cols=126 Identities=25% Similarity=0.276 Sum_probs=106.7
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhC-----CCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCC
Q 003889 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTN-----KHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPC 658 (788)
Q Consensus 584 l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~-----~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~ 658 (788)
-+++.+|+.+ +++++++.|++++++.+++. ....+.|||+ +++++|+++.++|+.. +.
T Consensus 132 ~taG~~Mt~e-~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~----~~~L~Gvvsl~~Ll~a---~~--------- 194 (451)
T COG2239 132 DTAGRIMTTE-FVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDE----KGKLLGVVSLRDLLTA---EP--------- 194 (451)
T ss_pred hhhhccceee-eEEeccCcCHHHHHHHHHHhcccccccceEEEECC----ccceEEEeeHHHHhcC---Cc---------
Confidence 4789999999 99999999999999999844 3467889998 7899999999888431 11
Q ss_pred CCCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecC
Q 003889 659 DTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR 738 (788)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~ 738 (788)
...++++|++.+++|++++..+++.++|+++++-++||||+
T Consensus 195 ---------------------------------------~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~ 235 (451)
T COG2239 195 ---------------------------------------DELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDE 235 (451)
T ss_pred ---------------------------------------HhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECC
Confidence 11234459999999999999999999999999999999999
Q ss_pred CCeEEEEEeHhhhhhhhcCCCccchhc
Q 003889 739 ASRVIGLITRKDLLIEDGEDSTTVELQ 765 (788)
Q Consensus 739 ~g~lvGIITr~DLl~~~~~~~~~~~~~ 765 (788)
+++++|+||..|+++...++..++-.+
T Consensus 236 ~~~LiG~itiDDiidvi~eEa~eDi~~ 262 (451)
T COG2239 236 DNRLIGIITIDDIIDVIEEEATEDILR 262 (451)
T ss_pred CCceeeeeeHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988776555443
No 118
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=99.00 E-value=5.4e-09 Score=119.37 Aligned_cols=168 Identities=17% Similarity=0.178 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccCCCCHHH
Q 003889 73 VVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPE 152 (788)
Q Consensus 73 ~~~w~~~~liGv~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipe 152 (788)
...+.+.+++|+++|+++.+|+......++++.... .. .. ...+...++.+++.+++. + +
T Consensus 274 ~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~-----~~--~~-~~~~l~~~lv~~~~~~~~-~----------~- 333 (466)
T cd03685 274 YFELIPFMLIGVIGGLLGALFNHLNHKVTRFRKRIN-----HK--GK-LLKVLEALLVSLVTSVVA-F----------P- 333 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cc--cc-hhHHHHHHHHHHHHHHHH-H----------H-
Confidence 344568899999999999999999988876543210 00 01 111122223333333221 1 0
Q ss_pred HHHHHcCcccccchhhHHHHHHHHHHHHHhccCCcccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhH
Q 003889 153 IKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDL 232 (788)
Q Consensus 153 v~~~l~g~~~~~~l~~~~l~~K~~~~~lsv~sG~svG~EGP~vhiGa~igs~l~~~~~~~~~l~~~~~~~f~~~~~~r~l 232 (788)
..-.-.++.|++.+.+++++|.+.|...|+.-+||++|..++..... +++. ...+.-.+
T Consensus 334 ------------~~l~~~~~~k~l~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~-------~~~~--~~~~~~~~ 392 (466)
T cd03685 334 ------------QTLLIFFVLYYFLACWTFGIAVPSGLFIPMILIGAAYGRLVGILLGS-------YFGF--TSIDPGLY 392 (466)
T ss_pred ------------HHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHH-------Hccc--cCCCchHH
Confidence 01133457899999999999999999999999999999999873111 1111 23445679
Q ss_pred HHHhhhhhhhhhhcCCccchhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHH
Q 003889 233 VTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRS 284 (788)
Q Consensus 233 i~~GaaAGvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~ 284 (788)
+.+||||-++++.|+|++++++.+|++.+ ...+.+.++++++|..+.+.
T Consensus 393 aliGmaa~lag~~raPlt~iviv~ElTg~---~~~l~pl~ia~~iA~~va~~ 441 (466)
T cd03685 393 ALLGAAAFLGGVMRMTVSLTVILLELTNN---LTYLPPIMLVLMIAKWVGDY 441 (466)
T ss_pred HHHHHHHHHhHHhhhhHHHHHHhhhhcCC---hhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987 45677888888888777764
No 119
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=98.90 E-value=1.9e-08 Score=113.53 Aligned_cols=174 Identities=18% Similarity=0.110 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccCCCCHHHH
Q 003889 74 VKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEI 153 (788)
Q Consensus 74 ~~w~~~~liGv~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev 153 (788)
..+.+.+++|+++|+++.+|+....++.+++...... ......+ ..+.+.+++.+.+. +
T Consensus 234 ~~l~~~illGv~~G~~g~~f~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~~i~~~~~-~------------- 292 (416)
T cd01036 234 YEFIPTVVIGVICGLLAALFVRLSIIFLRWRRRLLFR---KTARYRV----LEPVLFTLIYSTIH-Y------------- 292 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cccchhH----HHHHHHHHHHHHHH-H-------------
Confidence 3455789999999999999999998887665322100 0011111 12223333333332 1
Q ss_pred HHHHcCcccccchhhHHHHHHHHHHHHHhccCCcccccchHHHHHHHHHHHhhccCccccccccccccc--cCChhhhhh
Q 003889 154 KGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQV--FRSDRDRRD 231 (788)
Q Consensus 154 ~~~l~g~~~~~~l~~~~l~~K~~~~~lsv~sG~svG~EGP~vhiGa~igs~l~~~~~~~~~l~~~~~~~--f~~~~~~r~ 231 (788)
. . .-.-.++.|++.+.+++++|.+.|...|++-+||++|..++...+..++- -.++ .....+...
T Consensus 293 ---~------~-~l~~~~~~K~~~t~~t~~sg~pGG~f~Psl~iGA~~G~~~g~~~~~~~~~---~~~~~~~~~~~~~~~ 359 (416)
T cd01036 293 ---A------P-TLLLFLLIYFWMSALAFGIAVPGGTFIPSLVIGAAIGRLVGLLVHRIAVA---GIGAESATLWADPGV 359 (416)
T ss_pred ---H------H-HHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHccc---cccccccCCccChHH
Confidence 0 0 11345789999999999999999999999999999999998732110000 0000 001234568
Q ss_pred HHHHhhhhhhhhhhcCCccchhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHH
Q 003889 232 LVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRS 284 (788)
Q Consensus 232 li~~GaaAGvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~ 284 (788)
++.+||||-++++.|+|++++++.+|++.+ .....+.++++++|..+.+.
T Consensus 360 ~alvGmaa~l~~~~r~Plt~~vi~~ElTg~---~~~l~pl~ia~~ia~~v~~~ 409 (416)
T cd01036 360 YALIGAAAFLGGTTRLTFSICVIMMELTGD---LHHLLPLMVAILIAKAVADA 409 (416)
T ss_pred HHHHHHHHHhhhhhcchHhhhhheeeccCC---hhhHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999986 45667777777777776654
No 120
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.85 E-value=8.7e-09 Score=108.80 Aligned_cols=131 Identities=24% Similarity=0.335 Sum_probs=109.6
Q ss_pred hcccchhhhccC-CceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCC
Q 003889 581 MRQMTAKEACGA-QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCD 659 (788)
Q Consensus 581 l~~l~v~diM~~-~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~ 659 (788)
+++++|+|+|.+ .++..+..+.+.+++++.+.++.|+.+|+-.+. -...+|++..+|+++++.++..|..
T Consensus 197 Le~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~---~DnIiGvlh~r~llr~l~e~~~~~k------ 267 (423)
T COG4536 197 LENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDD---LDNIIGVLHVRDLLRLLNEKNEFTK------ 267 (423)
T ss_pred cccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCC---hhHhhhhhhHHHHHHHhhccCcccH------
Confidence 679999999987 238899999999999999999999999998763 3469999999999998766440100
Q ss_pred CCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCC
Q 003889 660 TRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA 739 (788)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~ 739 (788)
.| +.. .-..|+.|++.+++.+-+..|++.+-|.-.|||+.
T Consensus 268 --------------------------~d-------------~~~-~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEY 307 (423)
T COG4536 268 --------------------------ED-------------ILR-AADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEY 307 (423)
T ss_pred --------------------------hH-------------HHH-HhcCCeecCCCCcHHHHHHHHHHhcceEEEEEecc
Confidence 11 111 23678999999999999999999999999999999
Q ss_pred CeEEEEEeHhhhhhhhcCCCc
Q 003889 740 SRVIGLITRKDLLIEDGEDST 760 (788)
Q Consensus 740 g~lvGIITr~DLl~~~~~~~~ 760 (788)
|.+.|+||.+|+++....+..
T Consensus 308 G~i~GLVTLEDIlEEIVGdft 328 (423)
T COG4536 308 GDIQGLVTLEDILEEIVGDFT 328 (423)
T ss_pred CcEEeeeeHHHHHHHHhcccc
Confidence 999999999999999887665
No 121
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.81 E-value=6.9e-09 Score=82.63 Aligned_cols=55 Identities=31% Similarity=0.553 Sum_probs=51.5
Q ss_pred ccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhc
Q 003889 702 GPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (788)
Q Consensus 702 ~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (788)
+++|+++++++++++++.++.+.|++.+.+++||+|++++++|+||++|++++..
T Consensus 2 ~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 2 GDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred eECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 3569999999999999999999999999999999999999999999999998764
No 122
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.79 E-value=3.7e-08 Score=93.24 Aligned_cols=116 Identities=10% Similarity=0.151 Sum_probs=79.7
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+.++++++++.++++.|.+++.+.+||+|+ +++++|+|+.+|+.+.+.... ...... ..+
T Consensus 3 ~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~----~g~l~Givt~~Dl~~~~~~~~-~~~~~~--~~~------------- 62 (133)
T cd04592 3 YIKVSPTTTLKEALNLMLDEKQSCVLVVDS----DDFLEGILTLGDIQRFLFTNK-TTRVQP--EDE------------- 62 (133)
T ss_pred ceEECCCCCHHHHHHHHHHcCCCEEEEECC----CCeEEEEEEHHHHHHHHhhcc-cccccc--chh-------------
Confidence 788999999999999999889999999998 789999999999988664432 100000 000
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCC
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA 739 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~ 739 (788)
-.......+.++. ....+.+.|.+++.++++++++.+|+++|.+++.+++||+|++
T Consensus 63 --~~~~~~~~v~~i~-------~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 63 --TKQTNTCLVSSVC-------TKGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred --hcccccccHHHHh-------hhhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 0000000011110 0001122245678899999999999999999999999999875
No 123
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.76 E-value=1.5e-08 Score=100.43 Aligned_cols=132 Identities=22% Similarity=0.352 Sum_probs=109.5
Q ss_pred hcccchhhhccCC-ceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCC
Q 003889 581 MRQMTAKEACGAQ-KVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCD 659 (788)
Q Consensus 581 l~~l~v~diM~~~-~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~ 659 (788)
...++|+|+|.+. ..++++.+.++.+.++.+.++.|+.|||+.+. .....|++..+||++.+.... .
T Consensus 64 iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~ed---kD~v~GIL~AKDLL~~~~~~~-----~---- 131 (293)
T COG4535 64 IADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED---KDHVEGILLAKDLLPFMRSDA-----E---- 131 (293)
T ss_pred HHHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCC---chhhhhhhhHHHHHHHhcCCc-----c----
Confidence 4578999999862 28899999999999999999999999999873 578999999999988765432 0
Q ss_pred CCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCC
Q 003889 660 TRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA 739 (788)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~ 739 (788)
..|+++ +-++...|++.-.+...++-||..+.+...|+|+-
T Consensus 132 --------------------------------------~F~i~~-lLRPav~VPESKrvd~lLkeFR~~RnHMAIViDEf 172 (293)
T COG4535 132 --------------------------------------PFDIKE-LLRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEF 172 (293)
T ss_pred --------------------------------------cccHHH-hcccceecccchhHHHHHHHHHhhcCceEEEEecc
Confidence 112222 23566789999999999999999999999999999
Q ss_pred CeEEEEEeHhhhhhhhcCCCccch
Q 003889 740 SRVIGLITRKDLLIEDGEDSTTVE 763 (788)
Q Consensus 740 g~lvGIITr~DLl~~~~~~~~~~~ 763 (788)
|-+-|.||.+|+++.+..+.+.+.
T Consensus 173 GgVsGLVTIEDiLEqIVGdIEDE~ 196 (293)
T COG4535 173 GGVSGLVTIEDILEQIVGDIEDEY 196 (293)
T ss_pred CCeeeeEEHHHHHHHHhccccccc
Confidence 999999999999999887776543
No 124
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=98.71 E-value=1.5e-07 Score=106.42 Aligned_cols=172 Identities=16% Similarity=0.134 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccCCCCHHHH
Q 003889 74 VKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEI 153 (788)
Q Consensus 74 ~~w~~~~liGv~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev 153 (788)
..+.+.+++|+++|+++.+|+....+..+++.+... .........+ ....+.+++.+.+. .|
T Consensus 230 ~~l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~--~~~~~~~~~~---l~~~~~g~~~~~l~---~p---------- 291 (426)
T cd03683 230 QELPIFALLGIICGLLGALFVFLHRKIVRFRRKNRL--FSKFLKRSPL---LYPAIVALLTAVLT---FP---------- 291 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhhcccchH---HHHHHHHHHHHHHH---HH----------
Confidence 445678999999999999999998888776432210 0000000111 12223333333322 13
Q ss_pred HHHHcCcccccchhhHHHHHHHHHHHHHhccCCcccccchHHHHHHHHHHHhhccCcccccccccccc---cc--CChhh
Q 003889 154 KGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQ---VF--RSDRD 228 (788)
Q Consensus 154 ~~~l~g~~~~~~l~~~~l~~K~~~~~lsv~sG~svG~EGP~vhiGa~igs~l~~~~~~~~~l~~~~~~---~f--~~~~~ 228 (788)
. ..-.-.++.|++.+.+++++|.+.|...|+.-+||++|..++..... +++ +. ....+
T Consensus 292 --~--------~~l~~~~~~K~~~t~~t~gsG~~GGif~Psl~iGa~~G~~~g~~~~~-------~~p~~~~~~~~~~~~ 354 (426)
T cd03683 292 --F--------LTLFLFIVVKFVLTALAITLPVPAGIFMPVFVIGAALGRLVGEIMAV-------LFPEGIRGGISNPIG 354 (426)
T ss_pred --H--------HHHHHHHHHHHHHHHHHHhCCCChhhhHHHHHHHHHHHHHHHHHHHH-------HcCcccccCCCCCcC
Confidence 0 01234578999999999999999999999999999999998763211 111 00 01234
Q ss_pred hhhHHHHhhhhhhhhhhcCCccchhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHH
Q 003889 229 RRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRS 284 (788)
Q Consensus 229 ~r~li~~GaaAGvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~ 284 (788)
.-.++.+||||-++++.|+|.+.+ +.+|++.+ .+.+.+.++++++|..+.+.
T Consensus 355 ~~~~alvGmaa~~a~~~ra~~t~v-lv~E~Tg~---~~~llpl~ia~~ia~~v~~~ 406 (426)
T cd03683 355 PGGYAVVGAAAFSGAVTHTVSVAV-IIFELTGQ---ISHLLPVLIAVLISNAVAQF 406 (426)
T ss_pred chHHHHHHHHHHHHHHHhHHHHHh-eeeeecCC---cchHHHHHHHHHHHHHHHHh
Confidence 567999999999999999999875 89999976 35667777777777766653
No 125
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.54 E-value=2.2e-07 Score=73.85 Aligned_cols=56 Identities=21% Similarity=0.389 Sum_probs=52.6
Q ss_pred hhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHh
Q 003889 586 AKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQ 646 (788)
Q Consensus 586 v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~ 646 (788)
|+|+|+++ ++++++++++.++.+.|++++++.+||+|+ +++++|+|+++||++.+.
T Consensus 1 v~~~m~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~----~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTPP-PITVSPDDSLEEALEIMRKNGISRLPVVDE----DGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBSS-SEEEETTSBHHHHHHHHHHHTSSEEEEEST----TSBEEEEEEHHHHHHHHH
T ss_pred CeECCcCC-CEEEcCcCcHHHHHHHHHHcCCcEEEEEec----CCEEEEEEEHHHHHhhhh
Confidence 68999998 999999999999999999999999999998 799999999999988753
No 126
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.46 E-value=6.9e-07 Score=98.90 Aligned_cols=123 Identities=16% Similarity=0.251 Sum_probs=97.5
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
+..+.+++++.++++.|.+.+.+++||||+ +++.+|.+++.|...+..... +.....
T Consensus 239 i~~i~~~~~v~~al~~m~~~~is~lpvV~~----~g~~v~~~s~~Dv~~l~~~~~-~~~~~~------------------ 295 (381)
T KOG1764|consen 239 IASISEDTPVIEALKIMSERRISALPVVDE----NGKKVGNYSRFDVIHLAREGT-YNNLDL------------------ 295 (381)
T ss_pred heeecCCCcHHHHHHHHHhcCcCcceEEcC----CCceecceehhhhhhhhhcCc-cCccch------------------
Confidence 788899999999999999999999999999 677799999999988765544 222111
Q ss_pred cccCCCCCCC-ccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 003889 675 VKPASSKGLS-IDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (788)
Q Consensus 675 ~~~~~~~~~~-i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (788)
+ +. ...+.++.-....+++.++.++.++++.+.+++.+++.|||++|+++|+||..|++.
T Consensus 296 ---------~~l~----------~~~~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~ 356 (381)
T KOG1764|consen 296 ---------SCLS----------EALSHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILS 356 (381)
T ss_pred ---------hHHH----------HHhhhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHH
Confidence 0 00 011112222223589999999999999999999999999999999999999999999
Q ss_pred hhcCCC
Q 003889 754 EDGEDS 759 (788)
Q Consensus 754 ~~~~~~ 759 (788)
+.....
T Consensus 357 ~l~~~p 362 (381)
T KOG1764|consen 357 YLVLTP 362 (381)
T ss_pred HHHhCc
Confidence 887543
No 127
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.45 E-value=1.7e-06 Score=95.60 Aligned_cols=109 Identities=17% Similarity=0.240 Sum_probs=89.4
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
.....++.+..++.+.+.+.+.+...|+|+ ++++.|.++.+++...++...
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~------------------------- 302 (363)
T TIGR01186 252 PITKTADKGPRSALQLMRDERVDSLYVVDR----QNKLVGVVDVESIKQARKKAQ------------------------- 302 (363)
T ss_pred ceeecCCCCHHHHHHHHHhcCCceEEEEcC----CCCEEEEEeHHHHHHHhhcCC-------------------------
Confidence 344556778899999999999889999998 789999999999866543211
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (788)
. +.+.+.+...++++++++.+++..+.+.+.. +||+|++|+++|+||+.++++.
T Consensus 303 ---------~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~ 356 (363)
T TIGR01186 303 ---------G----------------LQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDA 356 (363)
T ss_pred ---------c----------------hhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHH
Confidence 1 1222666778899999999999999999999 9999999999999999999998
Q ss_pred hcCC
Q 003889 755 DGED 758 (788)
Q Consensus 755 ~~~~ 758 (788)
..+.
T Consensus 357 ~~~~ 360 (363)
T TIGR01186 357 LYDS 360 (363)
T ss_pred HHhh
Confidence 7643
No 128
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.42 E-value=1.7e-06 Score=96.74 Aligned_cols=120 Identities=18% Similarity=0.195 Sum_probs=94.3
Q ss_pred cchhhhccCCce--EEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCC
Q 003889 584 MTAKEACGAQKV--VSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTR 661 (788)
Q Consensus 584 l~v~diM~~~~v--v~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~ 661 (788)
+++.++|.++.. +...++.+..++++.|...+.+...|+|+ ++++.|+|+.+++....+...
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~------------ 337 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIER----GNKFVGAVSIDSLKTALTQQQ------------ 337 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcC----CCcEEEEEeHHHHHhhhhcCC------------
Confidence 566777754301 22335668899999999999999999998 799999999999965432211
Q ss_pred CCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCe
Q 003889 662 GGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASR 741 (788)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~ 741 (788)
++.+.+.+...+|++++++.+++..+.+.... +||||++|+
T Consensus 338 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~ 378 (400)
T PRK10070 338 --------------------------------------GLDAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQ 378 (400)
T ss_pred --------------------------------------chhhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCc
Confidence 12223566678899999999999999998777 999999999
Q ss_pred EEEEEeHhhhhhhhcCC
Q 003889 742 VIGLITRKDLLIEDGED 758 (788)
Q Consensus 742 lvGIITr~DLl~~~~~~ 758 (788)
++|+||+.++++...+.
T Consensus 379 ~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 379 YVGIISKGMLLRALDRE 395 (400)
T ss_pred EEEEEEHHHHHHHHHhc
Confidence 99999999999987643
No 129
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.39 E-value=3.9e-07 Score=93.30 Aligned_cols=185 Identities=18% Similarity=0.174 Sum_probs=117.5
Q ss_pred hHHHHHHhhhhhhhhhcchhHHHHHHHHHHhC-------CCc-hHHHHHHHHHHHHHHHhhhCccHHHHHHHHcCCCCCC
Q 003889 503 EGTYALLGAASFLGGSMRMTVSLCVIMVEITN-------NLK-FLPLIMLVLLISKAVGDAFSEGLYEEQAHLRGVPLLE 574 (788)
Q Consensus 503 ~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg-------~~~-~l~pi~~~~~~a~~v~~~~~~~iy~~~l~~kg~p~l~ 574 (788)
.+.....++++|+.--+-+|-|.++-+.-+-| ++. .+.|+.+.+++-...+-. |+. +..+.+|...
T Consensus 109 ~~lavsLaI~~M~~~rcLHPPsgAvALtavlgGpav~~~g~~F~l~Pval~SliLv~~a~l-----ynn-l~~r~YPh~~ 182 (382)
T COG3448 109 SGLAVSLAIGAMFALRCLHPPSGAVALTAVLGGPAVHRLGYNFVLWPVALNSLILVGLALL-----YNN-LTRRTYPHHW 182 (382)
T ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHhcCcccccCCCCceehhhhhhhHHHHHHHHH-----HHH-HhcCCCCCcc
Confidence 33444455555555555556665555544433 233 467788887776666654 434 3444555322
Q ss_pred CCchhhhcccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCC
Q 003889 575 SRPKYKMRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHS 654 (788)
Q Consensus 575 ~~~~~~l~~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~ 654 (788)
..++...+ -| .++ ....+..-+-+|+-+.+++.+. .+| |+|+||.+++++-++ ..
T Consensus 183 ~~p~an~H-gT-----~Dp-pp~~rvgfs~~Dld~aL~~~~E----~lD------------IdrddLe~llr~~el-qa- 237 (382)
T COG3448 183 LSPPANLH-GT-----ADP-PPSQRVGFSSEDLDAALQRLGE----TLD------------IDRDDLERLLRETEL-QA- 237 (382)
T ss_pred CCCccccc-CC-----CCC-CchhccCCCHHHHHHHHHhcCc----eec------------CCHHHHHHHHHHHHH-HH-
Confidence 22221111 11 123 3444556677777777776554 444 478999888776431 00
Q ss_pred CCCCCCCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEE
Q 003889 655 PLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIF 734 (788)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lp 734 (788)
+++ .....+..++|+++.+++++++++.++.+++.+++++.+|
T Consensus 238 -------------------~~R------------------~~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLP 280 (382)
T COG3448 238 -------------------LRR------------------RMGELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALP 280 (382)
T ss_pred -------------------HHH------------------HhccccHHHhcCccceecCCcCChHHHHHHHHHcCccccc
Confidence 000 0113456667999999999999999999999999999999
Q ss_pred EecCCCeEEEEEeHhhhhhhh
Q 003889 735 VVPRASRVIGLITRKDLLIED 755 (788)
Q Consensus 735 VVd~~g~lvGIITr~DLl~~~ 755 (788)
|+|++.|++||||++|+.+..
T Consensus 281 V~d~~~rl~GiVt~~dl~~~a 301 (382)
T COG3448 281 VLDEHRRLVGIVTQRDLLKHA 301 (382)
T ss_pred ccccccceeeeeeHHHHhhcc
Confidence 999999999999999999843
No 130
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.28 E-value=1.7e-06 Score=92.28 Aligned_cols=111 Identities=13% Similarity=0.335 Sum_probs=93.0
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
++++.+..++.++++.-..+..+++||.++.. -.++|+|+|+.+|+--+ +++.
T Consensus 118 p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~-~~~KLvG~vtsrdi~f~-~~~~------------------------- 170 (503)
T KOG2550|consen 118 PIVISPTTTVGEVKEAKEKHGFSGIPVTEDGK-RGSKLVGIITSRDIQFL-EDNS------------------------- 170 (503)
T ss_pred CcccCCcccchhhhhhcccccccccccccCCc-ccceeEEEEehhhhhhh-hccc-------------------------
Confidence 57789999999999999999999999997622 14799999999998443 2111
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (788)
..+.++|.+.+++.+.+.+++++-+++++.....+||||++|+++-+|+|.||.+.
T Consensus 171 ------------------------~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 171 ------------------------LLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKN 226 (503)
T ss_pred ------------------------chhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhh
Confidence 12334488888999999999999999999999999999999999999999999886
Q ss_pred hc
Q 003889 755 DG 756 (788)
Q Consensus 755 ~~ 756 (788)
..
T Consensus 227 ~~ 228 (503)
T KOG2550|consen 227 RD 228 (503)
T ss_pred cC
Confidence 54
No 131
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.95 E-value=1.4e-05 Score=73.31 Aligned_cols=55 Identities=24% Similarity=0.298 Sum_probs=50.2
Q ss_pred cCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 003889 699 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (788)
Q Consensus 699 idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (788)
..+.++|.+.+.++++++++.++++.|++.+.+.+||+|++|+++|+||++|+.+
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 4466679899999999999999999999999999999999899999999999864
No 132
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.87 E-value=3.6e-05 Score=70.51 Aligned_cols=54 Identities=11% Similarity=0.230 Sum_probs=50.6
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHH
Q 003889 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLL 642 (788)
Q Consensus 584 l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~ 642 (788)
.+++|+|.++ +.++++++++.++++.|.++++..+||+|+ +++++|+|+.+++.
T Consensus 58 ~~v~dim~~~-~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~----~~~l~Givt~~dl~ 111 (113)
T cd04597 58 PRVRDVINRK-PVTARPNDPLREALNLMHEHNIRTLPVVDD----DGTPAGIITLLDLA 111 (113)
T ss_pred hhHHHhcCCC-CCEECCcCcHHHHHHHHHHcCCCEEEEECC----CCeEEEEEEHHHhh
Confidence 6899999988 999999999999999999999999999998 78999999999984
No 133
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.83 E-value=1e-05 Score=94.99 Aligned_cols=141 Identities=17% Similarity=0.309 Sum_probs=98.0
Q ss_pred cccchhhhcc-CCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCC
Q 003889 582 RQMTAKEACG-AQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDT 660 (788)
Q Consensus 582 ~~l~v~diM~-~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~ 660 (788)
...+++|+|+ ++ ++++++++++.++.+.|.+++++.+||||+ +++++|+|+++|+.....++..+.+......
T Consensus 244 ~~~~V~~iM~~~~-~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~----~g~lvGiit~~dl~~~~~~~~iLVD~~e~~q- 317 (546)
T PRK14869 244 QSIPVSYIMTTED-LVTFSKDDYLEDVKEVMLKSRYRSYPVVDE----DGKVVGVISRYHLLSPVRKKVILVDHNEKSQ- 317 (546)
T ss_pred cCCCHHHhccCCC-cEEECCCCcHHHHHHHHHhcCCCceEEEcC----CCCEEEEEEHHHhhccccCceEEEcCccccc-
Confidence 3678999999 78 999999999999999999999999999998 7999999999999875433221111100000
Q ss_pred CCCCCccccccccccccCCCCCCCccccccCcccccccc---CcccccCCCCcee---cCCCCHHHHHHHHHHcCCCEEE
Q 003889 661 RGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYI---DLGPFLNPSPYVV---PEDMSLSKVYNLFRQLGLRHIF 734 (788)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~i---dl~~~m~~~p~tV---~~~~sl~~a~~lf~~~glr~lp 734 (788)
..+.+. +.+....+ .+.++|++.|+.+ +...+...+.++|++.+....|
T Consensus 318 -----------------------~~~~~~--~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~ 372 (546)
T PRK14869 318 -----------------------AVEGIE--EAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSP 372 (546)
T ss_pred -----------------------cccchh--hceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCH
Confidence 000000 00000011 1334566676655 3356678899999999998888
Q ss_pred EecCCCeEEEEEeHhhhhhh
Q 003889 735 VVPRASRVIGLITRKDLLIE 754 (788)
Q Consensus 735 VVd~~g~lvGIITr~DLl~~ 754 (788)
++.. .-+.||+|-++.+++
T Consensus 373 ~ia~-~ll~gIlsDT~~f~~ 391 (546)
T PRK14869 373 EIAG-LLLAAILSDTLLFKS 391 (546)
T ss_pred HHHH-HHHHHHHHHhcCccC
Confidence 8866 679999998888775
No 134
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=97.75 E-value=2.9e-05 Score=88.69 Aligned_cols=112 Identities=14% Similarity=0.216 Sum_probs=90.5
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCC
Q 003889 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGG 663 (788)
Q Consensus 584 l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~ 663 (788)
.+++|+|+++ ++++++++++.++.+.|+++++..+||||+ +++++|+|+.+|+.+.+.++.
T Consensus 195 ~~v~~im~~~-~~~v~~~~~~~eal~~m~~~~~~~lpVVD~----~g~lvGiIt~~Dil~~l~~~~-------------- 255 (449)
T TIGR00400 195 EILSSIMRSS-VFSIVGVNDQEEVARLIQKYDFLAVPVVDN----EGRLVGIVTVDDIIDVIQSEA-------------- 255 (449)
T ss_pred CcHHHHhCCC-CeeECCCCCHHHHHHHHHHcCCCEEeEEcC----CCeEEEEEEHHHHHHHHHhhh--------------
Confidence 4699999998 899999999999999999999999999998 789999999999988765432
Q ss_pred CCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEE
Q 003889 664 SKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVI 743 (788)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lv 743 (788)
-+ ++|+....+..+++.+.++...+.++++..++|. .+.
T Consensus 256 ---------------------~e----------------d~~~~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~----~~~ 294 (449)
T TIGR00400 256 ---------------------TE----------------DFYMIAAVKPLDDSYFDTSILVMAKNRIIWLLVL----LVS 294 (449)
T ss_pred ---------------------HH----------------HHHHhcCCCCCcchhhhchHHHHHHhccchHHHH----HHH
Confidence 01 2255555555567788999999999999999885 578
Q ss_pred EEEeHhhhhhhhc
Q 003889 744 GLITRKDLLIEDG 756 (788)
Q Consensus 744 GIITr~DLl~~~~ 756 (788)
|++| ..+++.+.
T Consensus 295 ~~~t-~~ii~~f~ 306 (449)
T TIGR00400 295 STFT-ATIISNYE 306 (449)
T ss_pred HHHH-HHHHHHHH
Confidence 8888 66666544
No 135
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=97.70 E-value=2.9e-05 Score=72.99 Aligned_cols=62 Identities=27% Similarity=0.365 Sum_probs=56.7
Q ss_pred cccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhcCCC
Q 003889 697 MYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGEDS 759 (788)
Q Consensus 697 ~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~~~ 759 (788)
..+..+.+|+++.+.|++++++.++.++|+++|...+||+++ |+++|-||..|+.+...+..
T Consensus 63 ~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~ 124 (187)
T COG3620 63 TRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGM 124 (187)
T ss_pred ceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhccc
Confidence 345667789999999999999999999999999999999998 99999999999999987665
No 136
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=97.59 E-value=0.00012 Score=74.36 Aligned_cols=59 Identities=14% Similarity=0.292 Sum_probs=55.3
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHh
Q 003889 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQ 646 (788)
Q Consensus 583 ~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~ 646 (788)
+.+|+|+|+++ ++++++++.+.|++++|..++...+.|+|+ +++.+|+|||.|+++.+.
T Consensus 233 ~~kV~~~M~k~-vitI~eDe~i~dAir~M~~~nVGRLlV~ds----~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 233 DAKVSDYMRKN-VITINEDEDIYDAIRLMNKNNVGRLLVTDS----NGKPVGIITRTDILTRIA 291 (294)
T ss_pred cccHHHHhccC-CceEcCchhHHHHHHHHHhcCcceEEEEcc----CCcEEEEEehHHHHHHhh
Confidence 67899999999 999999999999999999999999999998 899999999999987653
No 137
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.56 E-value=0.00018 Score=66.15 Aligned_cols=49 Identities=14% Similarity=0.210 Sum_probs=44.8
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhc
Q 003889 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (788)
Q Consensus 708 ~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (788)
+..++++++++.++.++|.+.+.+++||+|++|+++|++|++|+.+...
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~ 50 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAK 50 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHh
Confidence 4578899999999999999999999999998899999999999997653
No 138
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.55 E-value=0.00015 Score=64.60 Aligned_cols=47 Identities=17% Similarity=0.317 Sum_probs=43.0
Q ss_pred CceecCCCCHHHHHHHHHHcCCCEEEEecCC-CeEEEEEeHhhhhhhh
Q 003889 709 PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIED 755 (788)
Q Consensus 709 p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~-g~lvGIITr~DLl~~~ 755 (788)
++++++++++.++.++|.+.+.+++||+|++ |+++|+||++|+.+..
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~ 50 (98)
T cd04618 3 LVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL 50 (98)
T ss_pred EEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe
Confidence 4689999999999999999999999999975 8999999999998754
No 139
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.54 E-value=0.0002 Score=53.42 Aligned_cols=47 Identities=30% Similarity=0.566 Sum_probs=42.5
Q ss_pred CceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhh
Q 003889 709 PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIED 755 (788)
Q Consensus 709 p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~ 755 (788)
+.++.+++++.++.+.|++.+.+++||+|++++++|+++++|+.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 45788999999999999999999999999889999999999997653
No 140
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.50 E-value=0.00017 Score=65.30 Aligned_cols=55 Identities=24% Similarity=0.271 Sum_probs=50.5
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHH
Q 003889 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (788)
Q Consensus 584 l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~ 643 (788)
.+++++|..+ +.++++++++.++++.|.+++.+.+||+|+ +++++|+|+++|+.+
T Consensus 56 ~~v~~~~~~~-~~~v~~~~~l~~al~~m~~~~~~~lpVvd~----~~~~~Giit~~di~~ 110 (111)
T cd04603 56 LKVCEVYIVP-VPIVYCDSKVTDLLRIFRETEPPVVAVVDK----EGKLVGTIYERELLR 110 (111)
T ss_pred cChhheeecC-CcEECCCCcHHHHHHHHHHcCCCeEEEEcC----CCeEEEEEEhHHhhc
Confidence 4688999888 889999999999999999999999999998 789999999999854
No 141
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.49 E-value=0.0005 Score=77.75 Aligned_cols=188 Identities=21% Similarity=0.178 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccCCCCHHHHHHH
Q 003889 77 FFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGY 156 (788)
Q Consensus 77 ~~~~liGv~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~ 156 (788)
+..+++|+..|+.+.++...-....+++-.+ ....++. ..+ +++.....+..++.|..+=.+..-+...
T Consensus 310 ~pFi~LGifgGl~G~~~ir~n~~~~~~rK~~----~lg~~pv---~ev----~~vt~iTaiIs~~np~~r~~~~e~i~~L 378 (696)
T KOG0475|consen 310 LPFILLGIFGGLWGAFFIRLNIRFCRFRKSS----KLGKFPV---LEV----VFVTLVTAIISLFNPETRFNMSELITIL 378 (696)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHhccchh----hccCCcc---hhH----HHHHHHHHHHHhcCHHHHhhHHHHHHHH
Confidence 4678999999999988887665555443222 0111211 111 2222333355677787776665556655
Q ss_pred HcCccccc-------------chhhHHHHHHHHHHHHHhccCCcccccchHHHHHHHHHHHhhccCccccc-cccccccc
Q 003889 157 LNGVDIHG-------------ILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYH-LRYRWLQV 222 (788)
Q Consensus 157 l~g~~~~~-------------~l~~~~l~~K~~~~~lsv~sG~svG~EGP~vhiGa~igs~l~~~~~~~~~-l~~~~~~~ 222 (788)
+|.-.... .+-...++.|++.++++.|++.+.|..-|++.+||+.|-.+|-..-+.+. -+|. .
T Consensus 379 f~~C~~~~s~~l~~~~~~~~~~~L~~a~i~k~~~t~ftfGakvP~GifvPSmaiGA~aGr~vG~~~e~l~~~~~~~---~ 455 (696)
T KOG0475|consen 379 FNKCSPSSSTSLPETTVYSAAILLLLALILKIALTIFTFGAKVPAGIFVPSLAIGAIAGRAVGIIVEQLAQNPDFN---L 455 (696)
T ss_pred HhhcCCcccccCcccchHHHHHHHHHHHHHHHHHHHhhhhccCccceecchHHHHHHHHHHHHHHHHHHhcCCCcc---c
Confidence 55332111 12234578999999999999999999999999999999988843211111 1111 1
Q ss_pred cC-ChhhhhhHHHHhhhhhhhhhhcCCccchhhhhhhhchhhhhhhHHHHHHHHHHHHHH
Q 003889 223 FR-SDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVV 281 (788)
Q Consensus 223 f~-~~~~~r~li~~GaaAGvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v 281 (788)
|. +-.........||||-++.+-|-|++-|+--+|.+.. .+...+.+.+.+++-.+
T Consensus 456 fg~~ci~Pg~Ya~vGaAA~LsGvtrltvtlVVImFELTG~---l~~IlPlm~av~~SkwI 512 (696)
T KOG0475|consen 456 FGLSCATPGAYALVGAAATLSGVTRLTVTLVVIMFELTGA---LNYILPLMLAVMISKWI 512 (696)
T ss_pred cchhhcCchHHHHHHHHHHhcCcceeeEEEEEEeeeccCc---ceeHHHHHHHHHHHHHH
Confidence 11 1123566788999999999999999999999999976 34445555544444433
No 142
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.43 E-value=0.00031 Score=62.09 Aligned_cols=48 Identities=19% Similarity=0.321 Sum_probs=44.0
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhh
Q 003889 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIED 755 (788)
Q Consensus 708 ~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~ 755 (788)
++.++.+++++.++.+.|.+.+.+.+||+|++|+++|+++.+|+.+..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~ 49 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKS 49 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCC
Confidence 567899999999999999999999999999889999999999998743
No 143
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.41 E-value=0.00028 Score=64.19 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=51.0
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHH
Q 003889 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (788)
Q Consensus 583 ~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~ 643 (788)
..+++++|..+ ++++++++++.++++.|.+++.+.+||+|+ +++++|+|+++|+.+
T Consensus 58 ~~~v~~~~~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~----~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 58 TAPVENVMTRA-VVSCRPGDLLHDVWQVMKQRGLKNIPVVDE----NARPLGVLNARDALK 113 (114)
T ss_pred cCCHHHHhcCC-CeeECCCCCHHHHHHHHHHcCCCeEEEECC----CCcEEEEEEhHhhcc
Confidence 35788999888 899999999999999999999999999997 689999999999853
No 144
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.40 E-value=0.00037 Score=65.90 Aligned_cols=49 Identities=18% Similarity=0.099 Sum_probs=45.2
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhc
Q 003889 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (788)
Q Consensus 708 ~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (788)
++.++++++++.++.+.|.+.+...+||+|++|+++|+||.+|++++..
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~ 50 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLF 50 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHh
Confidence 4578999999999999999999999999999899999999999998765
No 145
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=97.36 E-value=0.00042 Score=64.40 Aligned_cols=50 Identities=18% Similarity=0.406 Sum_probs=45.4
Q ss_pred CCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhc
Q 003889 707 PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (788)
Q Consensus 707 ~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (788)
+++.++++++++.++.+.|++.+.+++||+|++++++|+||.+|+++...
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~ 51 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLS 51 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHH
Confidence 35678999999999999999999999999999899999999999997544
No 146
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.28 E-value=0.00083 Score=77.55 Aligned_cols=57 Identities=16% Similarity=0.313 Sum_probs=52.1
Q ss_pred cchhhhcc-CCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHH
Q 003889 584 MTAKEACG-AQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLL 645 (788)
Q Consensus 584 l~v~diM~-~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL 645 (788)
.+++|+|+ ++ ++++++++++.++.+.|.+++.+.+||+|+ +++++|+|+++|+++.+
T Consensus 147 ~~V~dim~~~~-~v~v~~~~sl~eal~~m~~~~~~~lpVVDe----~g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 147 QPVSEVMTKER-LVTVPEGTTLEEALELLHEHRIEKLPVVDD----NGRLKGLITVKDIEKAE 204 (486)
T ss_pred CcHHHHcCCCC-CEEECCCCCHHHHHHHHHHcCCCEEEEEcC----CCcEEEEEEhHHhhhhh
Confidence 46889998 67 899999999999999999999999999998 78999999999997754
No 147
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.26 E-value=0.00042 Score=63.46 Aligned_cols=56 Identities=13% Similarity=0.204 Sum_probs=49.7
Q ss_pred ccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCC---cEEEEEEeHHHHHH
Q 003889 583 QMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGE---RLVIGLVLRSHLLV 643 (788)
Q Consensus 583 ~l~v~diM~~--~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~---~~lvGiI~r~dL~~ 643 (788)
..+++++|.+ + +.++++++++.++++.|.++++..+||+|+ + ++++|+|+++++.+
T Consensus 57 ~~~~~~~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~----~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 57 KVPVGVIMTRMPN-ITTTTPEESVLEAAKKLIEHQVDSLPVVEK----VDEGLEVIGRITKTNITK 117 (118)
T ss_pred CCCHHHHhCCCCC-cEEECCCCcHHHHHHHHHHcCCCEeeEEeC----CCccceEEEEEEhhheec
Confidence 5678889985 6 889999999999999999999999999998 4 69999999999854
No 148
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.19 E-value=0.00057 Score=74.93 Aligned_cols=59 Identities=14% Similarity=0.122 Sum_probs=51.9
Q ss_pred ccCcccccCC--CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhc
Q 003889 698 YIDLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (788)
Q Consensus 698 ~idl~~~m~~--~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (788)
.+.++++|.+ ++.++++++++.++.++|.+.+.+.+||+|++|+++|+||.+|+.+...
T Consensus 201 ~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~ 261 (326)
T PRK10892 201 LLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFD 261 (326)
T ss_pred cCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHh
Confidence 3556777987 8899999999999999999999888888998899999999999987544
No 149
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.19 E-value=0.00053 Score=74.97 Aligned_cols=58 Identities=17% Similarity=0.063 Sum_probs=52.8
Q ss_pred cCcccccCCC--CceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhc
Q 003889 699 IDLGPFLNPS--PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (788)
Q Consensus 699 idl~~~m~~~--p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (788)
.+++++|+++ +.++++++++.++.+.|++.+..++||+|++|+++|+||.+|+.+...
T Consensus 197 ~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~ 256 (321)
T PRK11543 197 NKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLV 256 (321)
T ss_pred hHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHh
Confidence 5678889998 999999999999999999999999999999999999999999987543
No 150
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.18 E-value=0.00088 Score=59.72 Aligned_cols=48 Identities=27% Similarity=0.412 Sum_probs=43.7
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhh
Q 003889 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIED 755 (788)
Q Consensus 708 ~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~ 755 (788)
++.++++++++.++.+.|.+.+.+++||+|++|+++|++|++|+.+..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~ 49 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARAS 49 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhc
Confidence 567899999999999999999999999999889999999999998753
No 151
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.17 E-value=0.001 Score=59.75 Aligned_cols=50 Identities=22% Similarity=0.346 Sum_probs=45.0
Q ss_pred CCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhc
Q 003889 707 PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (788)
Q Consensus 707 ~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (788)
+++.++++++++.++.+.|.+.+..++||+|++|+++|++|.+|+++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~ 51 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVA 51 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHh
Confidence 45678999999999999999999999999999899999999999986543
No 152
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.16 E-value=0.00098 Score=60.06 Aligned_cols=50 Identities=22% Similarity=0.343 Sum_probs=44.9
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhcC
Q 003889 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (788)
Q Consensus 708 ~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~ 757 (788)
++.++++++++.++.+.|.+.+.+.+||+|++|+++|+||.+|+++...+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~ 51 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAA 51 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhc
Confidence 45788999999999999999999999999998999999999999876543
No 153
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.11 E-value=0.001 Score=59.98 Aligned_cols=49 Identities=18% Similarity=0.278 Sum_probs=44.5
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhc
Q 003889 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (788)
Q Consensus 708 ~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (788)
++.++++++++.++.+.|++.+.+++||+|++++++|+|+++|+.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~ 50 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILF 50 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHh
Confidence 4578999999999999999999999999999899999999999987654
No 154
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.10 E-value=0.0011 Score=60.11 Aligned_cols=54 Identities=19% Similarity=0.316 Sum_probs=49.5
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHH
Q 003889 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLL 642 (788)
Q Consensus 584 l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~ 642 (788)
.+++++|.++ +.++++++++.++++.|.+++.+.+||+|+ +++++|+|+++|++
T Consensus 58 ~~v~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~~~~~Gvit~~di~ 111 (113)
T cd04607 58 DPVSEVMNRN-PITAKVGSSREEILALMRERSIRHLPILDE----EGRVVGLATLDDLL 111 (113)
T ss_pred CCHHHhhcCC-CEEEcCCCCHHHHHHHHHHCCCCEEEEECC----CCCEEEEEEhHHhc
Confidence 4688999888 899999999999999999999999999997 68999999999984
No 155
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.10 E-value=0.0011 Score=60.04 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=44.5
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhc
Q 003889 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (788)
Q Consensus 708 ~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (788)
.+.++++++++.++.+.|++.+.+.+||+|++++++|+++.+|+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~ 50 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLK 50 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhh
Confidence 3468999999999999999999999999998899999999999987654
No 156
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.07 E-value=0.0014 Score=59.01 Aligned_cols=50 Identities=16% Similarity=0.346 Sum_probs=44.7
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhcC
Q 003889 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (788)
Q Consensus 708 ~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~ 757 (788)
++.++++++++.++.+.|.+.+..++||+|++++++|++|++|+++....
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~ 51 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVAL 51 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhh
Confidence 45678999999999999999999999999988999999999999976543
No 157
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.07 E-value=0.0011 Score=60.13 Aligned_cols=55 Identities=24% Similarity=0.379 Sum_probs=49.0
Q ss_pred cchhhhccCCceEEecCc--ccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHH
Q 003889 584 MTAKEACGAQKVVSLPRI--IKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (788)
Q Consensus 584 l~v~diM~~~~vv~l~~~--~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~ 643 (788)
.++.++|.++ +.+++++ +++.++++.|.+++...+||+|+ +++++|+|+++++.+
T Consensus 58 ~~i~~~~~~~-~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~----~~~~~Gvit~~dl~~ 114 (115)
T cd04620 58 LPIGEVMTQP-VVTLQESEIQDIFTALSLFRQHQIRHLPVLDD----QGQLIGLVTAESIRQ 114 (115)
T ss_pred cCHHHhcCCC-cEEEecccccCHHHHHHHHHHhCCceEEEEcC----CCCEEEEEEhHHhhc
Confidence 5688999888 8888876 68999999999999999999998 789999999999854
No 158
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.06 E-value=0.0011 Score=60.96 Aligned_cols=56 Identities=25% Similarity=0.480 Sum_probs=51.0
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHH
Q 003889 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (788)
Q Consensus 583 ~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~ 643 (788)
..+++++|.++ ++++++++++.++++.|.+.+.+.+||+|+ +++++|+|+++|+..
T Consensus 68 ~~~i~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~----~g~~~Gvit~~di~~ 123 (124)
T cd04600 68 PETVGDIMSPP-VVTVRPDTPIAELVPLLADGGHHHVPVVDE----DRRLVGIVTQTDLIA 123 (124)
T ss_pred cccHHHhccCC-CeeeCCCCcHHHHHHHHHhcCCCceeEEcC----CCCEEEEEEhHHhhc
Confidence 45788999888 999999999999999999999999999997 689999999999853
No 159
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.06 E-value=0.0012 Score=59.34 Aligned_cols=57 Identities=14% Similarity=0.300 Sum_probs=51.1
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHH
Q 003889 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVL 644 (788)
Q Consensus 583 ~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~l 644 (788)
+.+++++|.++ +.++++++++.++.+.|.+++...+||+|+ +++++|+|+++|+++.
T Consensus 52 ~~~v~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~----~~~~~Gvit~~dll~~ 108 (109)
T cd04606 52 DTPVSDIMDTD-VISVSADDDQEEVARLFEKYDLLALPVVDE----EGRLVGIITVDDVIDV 108 (109)
T ss_pred cchHHHHhCCC-CeEEcCCCCHHHHHHHHHHcCCceeeeECC----CCcEEEEEEhHHhhhh
Confidence 35688999888 899999999999999999999999999997 6899999999999753
No 160
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=97.06 E-value=0.0014 Score=59.43 Aligned_cols=49 Identities=27% Similarity=0.299 Sum_probs=44.6
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhc
Q 003889 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (788)
Q Consensus 708 ~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (788)
++.++++++++.++.+.|.+.+...+||+|++|+++|+++.+|+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~ 50 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALE 50 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHh
Confidence 4678899999999999999999999999999899999999999987654
No 161
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.04 E-value=0.001 Score=61.65 Aligned_cols=49 Identities=20% Similarity=0.215 Sum_probs=44.7
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhc
Q 003889 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (788)
Q Consensus 708 ~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (788)
++.++++++++.++++.|.+.+...+||+|++|+++|+|+.+|+++...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~ 50 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLL 50 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhc
Confidence 4578999999999999999999999999999899999999999998654
No 162
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.02 E-value=0.0014 Score=59.80 Aligned_cols=57 Identities=16% Similarity=0.383 Sum_probs=51.6
Q ss_pred cccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHH
Q 003889 582 RQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (788)
Q Consensus 582 ~~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~ 643 (788)
...++.++|.++ +.++++++++.++++.|.+.+.+.+||+|+ +++++|+|++.|+++
T Consensus 65 ~~~~~~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~~~~~Gvvt~~di~~ 121 (122)
T cd04585 65 SKIKVSDIMTRD-PITVSPDASVEEAAELMLERKISGLPVVDD----QGRLVGIITESDLFR 121 (122)
T ss_pred cccCHHHhccCC-CeEeCCCCcHHHHHHHHHHcCCCceeEECC----CCcEEEEEEHHHhhh
Confidence 356789999988 999999999999999999999999999987 689999999999854
No 163
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.02 E-value=0.0014 Score=58.74 Aligned_cols=56 Identities=18% Similarity=0.323 Sum_probs=50.6
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHH
Q 003889 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (788)
Q Consensus 583 ~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~ 643 (788)
+.+++++|..+ +.++++++++.++.+.|.+++.+.+||+|+ +++++|+++++++.+
T Consensus 52 ~~~v~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~~~~~G~it~~di~~ 107 (108)
T cd04596 52 DTTIEKVMTKN-PITVNPKTSVASVAHMMIWEGIEMLPVVDD----NKKLLGIISRQDVLK 107 (108)
T ss_pred cccHHHHhcCC-CeEECCCCCHHHHHHHHHHcCCCeeeEEcC----CCCEEEEEEHHHhhc
Confidence 35688999888 899999999999999999999999999997 689999999999853
No 164
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.00 E-value=0.0016 Score=58.71 Aligned_cols=55 Identities=20% Similarity=0.345 Sum_probs=50.0
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHH
Q 003889 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLL 642 (788)
Q Consensus 583 ~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~ 642 (788)
..++.++|.++ +.++++++++.++++.|.+++.+.+||+|+ +++++|++++.|+.
T Consensus 57 ~~~i~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~----~g~~~Gvvt~~dl~ 111 (113)
T cd04615 57 DAKVREVMNSP-VITIDANDSIAKARWLMSNNNISRLPVLDD----KGKVGGIVTEDDIL 111 (113)
T ss_pred CCcHHHhccCC-ceEECCCCcHHHHHHHHHHcCCCeeeEECC----CCeEEEEEEHHHhh
Confidence 45788999888 999999999999999999999899999998 68999999999984
No 165
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.00 E-value=0.0018 Score=58.38 Aligned_cols=54 Identities=11% Similarity=0.179 Sum_probs=49.1
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHH
Q 003889 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (788)
Q Consensus 584 l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~ 643 (788)
.++.++|..+ +.++++++++.++++.|.+++...+||+|+ ++++|+|+++|+.+
T Consensus 58 ~~v~~~~~~~-~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~-----~~~~Gvvt~~dl~~ 111 (112)
T cd04625 58 TTVRAIMNPE-PIVASPDDSIDEVRRLMVERHLRYLPVLDG-----GTLLGVISFHDVAK 111 (112)
T ss_pred CCHHHHhCCC-CeEECCCCCHHHHHHHHHHcCCCeeeEEEC-----CEEEEEEEHHHhhc
Confidence 5688999888 889999999999999999999999999985 79999999999854
No 166
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.99 E-value=0.0016 Score=60.46 Aligned_cols=46 Identities=37% Similarity=0.602 Sum_probs=42.5
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 003889 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (788)
Q Consensus 708 ~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (788)
++.++.+++++.++.+.|++.+.+++||+|++|+++|+++.+|+.+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~ 47 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLG 47 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhh
Confidence 3578999999999999999999999999998899999999999985
No 167
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.98 E-value=0.0012 Score=60.89 Aligned_cols=52 Identities=13% Similarity=0.209 Sum_probs=46.9
Q ss_pred hhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHH
Q 003889 586 AKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLL 642 (788)
Q Consensus 586 v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~ 642 (788)
+.++|.++ +.++++++++.++++.|.+++.+.+||+|+ +++++|+|+++|+.
T Consensus 70 ~~~~~~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~----~~~~vGiit~~di~ 121 (123)
T cd04627 70 DLTIGTSD-VISINGDQPLIDALHLMHNEGISSVAVVDN----QGNLIGNISVTDVR 121 (123)
T ss_pred hcccCcCC-ceEeCCCCCHHHHHHHHHHcCCceEEEECC----CCcEEEEEeHHHhh
Confidence 34567777 899999999999999999999999999998 68999999999985
No 168
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.97 E-value=0.0018 Score=60.03 Aligned_cols=48 Identities=29% Similarity=0.435 Sum_probs=43.4
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhh
Q 003889 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIED 755 (788)
Q Consensus 708 ~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~ 755 (788)
++.++.+++++.+++++|.+.+.+.+||+|++++++|+||++|+.+..
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~ 49 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFV 49 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHH
Confidence 346789999999999999999999999999989999999999998653
No 169
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.97 E-value=0.0014 Score=61.44 Aligned_cols=50 Identities=20% Similarity=0.309 Sum_probs=45.0
Q ss_pred CCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhc
Q 003889 707 PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (788)
Q Consensus 707 ~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (788)
+++.++.+++++.++.+.|.+.+.+++||+|++++++|+|+++|+.+...
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~ 51 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAE 51 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhc
Confidence 45678899999999999999999999999999899999999999987543
No 170
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=96.96 E-value=0.0014 Score=75.32 Aligned_cols=59 Identities=22% Similarity=0.359 Sum_probs=53.7
Q ss_pred ccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhc
Q 003889 698 YIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (788)
Q Consensus 698 ~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (788)
.++++++|++++.++.+++++.++.+.|++.+.+.+||+|++++++|+||.+|+.+...
T Consensus 334 ~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~ 392 (454)
T TIGR01137 334 NATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALF 392 (454)
T ss_pred cCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHh
Confidence 45677889999999999999999999999999999999998899999999999998654
No 171
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=96.95 E-value=0.00092 Score=75.05 Aligned_cols=64 Identities=19% Similarity=0.296 Sum_probs=56.5
Q ss_pred CcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhcCCCccch
Q 003889 700 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGEDSTTVE 763 (788)
Q Consensus 700 dl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~~~~~~~ 763 (788)
.+.+.+..+|++|++++|+.+|.+.|.+.|...+.|+|++++..||||++|+.+....+.....
T Consensus 150 rv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~~ 213 (610)
T COG2905 150 RVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSKT 213 (610)
T ss_pred HHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCcc
Confidence 4566689999999999999999999999999999999999999999999999998776444333
No 172
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.95 E-value=0.0017 Score=58.90 Aligned_cols=49 Identities=22% Similarity=0.274 Sum_probs=42.9
Q ss_pred CCceecCCCCHHHHHHHHHHcC-CCEEEEecCCCeEEEEEeHhhhhhhhc
Q 003889 708 SPYVVPEDMSLSKVYNLFRQLG-LRHIFVVPRASRVIGLITRKDLLIEDG 756 (788)
Q Consensus 708 ~p~tV~~~~sl~~a~~lf~~~g-lr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (788)
+..++++++++.++.+.|.+.+ .+.+||+|++++++|+|+.+|+.+...
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~ 51 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPT 51 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHH
Confidence 3467899999999999998775 889999999899999999999988654
No 173
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.94 E-value=0.0014 Score=61.33 Aligned_cols=50 Identities=22% Similarity=0.303 Sum_probs=45.1
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhcC
Q 003889 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (788)
Q Consensus 708 ~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~ 757 (788)
++.++++++++.++.+.|.+.+.+++||+|++++++|+|+++|+.+....
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~ 51 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYK 51 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhc
Confidence 45789999999999999999999999999998999999999999876543
No 174
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.94 E-value=0.0027 Score=70.79 Aligned_cols=50 Identities=22% Similarity=0.345 Sum_probs=43.5
Q ss_pred cCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhc
Q 003889 705 LNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (788)
Q Consensus 705 m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (788)
+.++..+|++++++.+++....+.+.. ++|+|+ |+++|+|++.++++...
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 331 LEAAPTVINPDTLMRDVLAARHRTGGA-ILLVEN-GRIVGVIGDDNIYHALL 380 (382)
T ss_pred hcccCcccCCCCcHHHHHHHHhcCCCC-eEEeeC-CeEEEEEeHHHHHHHHh
Confidence 345567899999999999999988876 889987 99999999999998764
No 175
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=96.94 E-value=0.0012 Score=70.03 Aligned_cols=59 Identities=12% Similarity=0.159 Sum_probs=53.5
Q ss_pred ccCcccccCCC-CceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhc
Q 003889 698 YIDLGPFLNPS-PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (788)
Q Consensus 698 ~idl~~~m~~~-p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (788)
.+.++++|+++ +.++++++++.++.+.|.+.+.+.+||+|++|+++|+||.+|+.+...
T Consensus 154 ~~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~ 213 (268)
T TIGR00393 154 LVKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALL 213 (268)
T ss_pred hhhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHh
Confidence 46778889888 899999999999999999999999999998899999999999987643
No 176
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.93 E-value=0.002 Score=58.41 Aligned_cols=55 Identities=11% Similarity=0.299 Sum_probs=49.7
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHH
Q 003889 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (788)
Q Consensus 583 ~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~ 643 (788)
..+++++|..+ +.++++++++.++++.|.+.+...+||+|+ ++++|+|+++|+.+
T Consensus 59 ~~~v~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-----~~~~Gvi~~~dl~~ 113 (114)
T cd04630 59 RVNVYEIMTKP-LISVSPDMDIKYCARLMERTNIRRAPVVEN-----NELIGIISLTDIFL 113 (114)
T ss_pred ccCHHHHhcCC-CeeECCCCCHHHHHHHHHHcCCCEeeEeeC-----CEEEEEEEHHHhhc
Confidence 35788999888 999999999999999999999999999986 78999999999853
No 177
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.92 E-value=0.0021 Score=57.32 Aligned_cols=55 Identities=15% Similarity=0.317 Sum_probs=49.7
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHH
Q 003889 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (788)
Q Consensus 584 l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~ 643 (788)
..++++|.++ +.++.+++++.++++.|.+++.+.+||+|+ +++++|+|+.+++++
T Consensus 52 ~~~~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~g~~~Gvi~~~di~~ 106 (107)
T cd04610 52 ETVEEIMSKD-LVVAVPEMDIMDAARVMFRTGISKLPVVDE----NNNLVGIITNTDVIR 106 (107)
T ss_pred ccHHHhCCCC-CeEECCCCCHHHHHHHHHHhCCCeEeEECC----CCeEEEEEEHHHhhc
Confidence 4688999888 899999999999999999999999999998 789999999999853
No 178
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.90 E-value=0.0017 Score=58.60 Aligned_cols=49 Identities=18% Similarity=0.246 Sum_probs=44.1
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhc
Q 003889 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (788)
Q Consensus 708 ~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (788)
++.++++++++.++.+.|.+.+.+.+||+|++++++|+|+.+|+.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~ 50 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLL 50 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhh
Confidence 4578899999999999999999999999999899999999999987543
No 179
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.89 E-value=0.0024 Score=60.25 Aligned_cols=55 Identities=15% Similarity=0.409 Sum_probs=50.1
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHH
Q 003889 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (788)
Q Consensus 583 ~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~ 643 (788)
..+++++|.++ +..+.+++++.++.+.|.+.+++.+||+|+ ++++|+|+++++.+
T Consensus 80 ~~~v~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-----~~~~Gvit~~di~~ 134 (135)
T cd04621 80 PLVAEDIMTEE-IITVSPNDDVVDAAKLMLEANISGLPVVDN-----DNIVGVITKTDICR 134 (135)
T ss_pred cccHHHhcCCC-CeEECCCCCHHHHHHHHHHcCCCEEEEEeC-----CEEEEEEEHHHHhh
Confidence 55799999988 899999999999999999999999999986 79999999999854
No 180
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.88 E-value=0.0024 Score=57.46 Aligned_cols=54 Identities=11% Similarity=0.379 Sum_probs=49.0
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHH
Q 003889 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLL 642 (788)
Q Consensus 583 ~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~ 642 (788)
..++.++|.++ +.++++++++.++++.|.+.+.+.+||+|+ + +++|+|+++|+.
T Consensus 57 ~~~~~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~-~~~Gvi~~~di~ 110 (112)
T cd04802 57 EVPVGEVMSTP-LITIDPNASLNEAAKLMAKHGIKRLPVVDD----D-ELVGIVTTTDIV 110 (112)
T ss_pred cCCHHHhcCCC-cEEECCCCCHHHHHHHHHHcCCCeeEEeeC----C-EEEEEEEhhhhh
Confidence 45788999888 899999999999999999999999999987 4 999999999985
No 181
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=96.88 E-value=0.0026 Score=57.06 Aligned_cols=48 Identities=17% Similarity=0.258 Sum_probs=43.6
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhc
Q 003889 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (788)
Q Consensus 708 ~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (788)
++.++++++++.++.+.|.+.+.+.+||+|+ ++++|+++++|+++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~ 49 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIA 49 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHh
Confidence 4577899999999999999999999999999 99999999999998643
No 182
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=96.86 E-value=0.0023 Score=58.11 Aligned_cols=55 Identities=24% Similarity=0.340 Sum_probs=47.8
Q ss_pred cchhhhccCCceEEecC--cccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHH
Q 003889 584 MTAKEACGAQKVVSLPR--IIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (788)
Q Consensus 584 l~v~diM~~~~vv~l~~--~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~ 643 (788)
..++++|..+ ..++.. ++++.++++.|.+++...+||+|+ +++++|+|+++|+.+
T Consensus 57 ~~v~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~----~~~~~Gvit~~di~~ 113 (114)
T cd04602 57 TPLSEVMTPR-EVLVVAPTGITLEEANEILRESKKGKLPIVND----DGELVALVTRSDLKK 113 (114)
T ss_pred CCHHHhcCCC-ceEEECCCCCCHHHHHHHHHhcCCCceeEECC----CCeEEEEEEHHHhhc
Confidence 3578999877 677755 999999999999999999999987 789999999999853
No 183
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=96.86 E-value=0.0022 Score=57.78 Aligned_cols=55 Identities=16% Similarity=0.288 Sum_probs=49.9
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHH
Q 003889 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (788)
Q Consensus 584 l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~ 643 (788)
.++.++|.++ ..++++++++.++.+.+.+++...+||+|+ +++++|+|++.|+.+
T Consensus 59 ~~v~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~----~~~~iG~it~~di~~ 113 (114)
T cd04604 59 LPVADVMTRN-PKTIDPDALAAEALELMEENKITALPVVDD----NGRPVGVLHIHDLLR 113 (114)
T ss_pred CCHHHhhccC-CeEECCCCcHHHHHHHHHHcCCCEEEEECC----CCCEEEEEEHHHhhc
Confidence 4688999988 889999999999999999999899999997 689999999999853
No 184
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.84 E-value=0.0024 Score=58.46 Aligned_cols=57 Identities=19% Similarity=0.302 Sum_probs=51.3
Q ss_pred cccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHH
Q 003889 582 RQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (788)
Q Consensus 582 ~~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~ 643 (788)
...++.++|.++ +.++++++++.++.+.|.+.+.+.+||+|+ +++++|+++++|+++
T Consensus 65 ~~~~~~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~----~g~~~Gvit~~dl~~ 121 (122)
T cd04635 65 ASPTVEKIMSTP-VYSVTPDDSIATAVELMLEHDIGRLPVVNE----KDQLVGIVDRHDVLK 121 (122)
T ss_pred ccCcHHHHhcCC-CeeECCCCCHHHHHHHHHHcCCCeeeEEcC----CCcEEEEEEhHHhhc
Confidence 356788999888 899999999999999999999999999998 689999999999854
No 185
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.84 E-value=0.0021 Score=57.73 Aligned_cols=55 Identities=13% Similarity=0.224 Sum_probs=49.6
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHH
Q 003889 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (788)
Q Consensus 584 l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~ 643 (788)
..+.++|..+ +.++++++++.++.+.|.+++.+.+||+|+ +++++|+++++|+..
T Consensus 56 ~~v~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~----~~~~~G~it~~dl~~ 110 (111)
T cd04639 56 APVRGVMRRD-FPTVSPSATLDAVLRLMQQGGAPAVPVVDG----SGRLVGLVTLENVGE 110 (111)
T ss_pred CcHHHHhcCC-CcEECCCCcHHHHHHHHHhcCCceeeEEcC----CCCEEEEEEHHHhhc
Confidence 3588899888 899999999999999999999999999987 689999999999853
No 186
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.82 E-value=0.0026 Score=58.21 Aligned_cols=57 Identities=23% Similarity=0.426 Sum_probs=51.3
Q ss_pred cccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHH
Q 003889 582 RQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (788)
Q Consensus 582 ~~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~ 643 (788)
...++.++|..+ ++++++++++.++++.|.+.+.+.+||+|+ +++++|+|++.|+..
T Consensus 65 ~~~~v~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~----~~~~~Gvit~~dl~~ 121 (122)
T cd04803 65 RDVPVAEVMKTD-VLTVTPDTPLREAAEIMVENKIGCLPVVDD----KGTLVGIITRSDFLR 121 (122)
T ss_pred cCcCHHHhhCCC-CeEeCCCCcHHHHHHHHHHcCCCeEEEEcC----CCCEEEEEEHHHhhc
Confidence 456789999888 899999999999999999999999999988 689999999999853
No 187
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.82 E-value=0.0019 Score=68.17 Aligned_cols=113 Identities=22% Similarity=0.212 Sum_probs=79.0
Q ss_pred hcccchhhhccCCceEEe-cCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCC
Q 003889 581 MRQMTAKEACGAQKVVSL-PRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCD 659 (788)
Q Consensus 581 l~~l~v~diM~~~~vv~l-~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~ 659 (788)
.+-++++|+|.+...... .+...-..+.+.+++.....+.+++. .++.+|++...++...
T Consensus 271 ~~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~----~~~~~g~v~~~~~~~~--------------- 331 (386)
T COG4175 271 SRVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDR----GNKFVGVVSIDSLVKA--------------- 331 (386)
T ss_pred hheeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhc----cCceeeEEeccchhcc---------------
Confidence 345688888884211111 12223335566666666555656665 5678888887666331
Q ss_pred CCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCC
Q 003889 660 TRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA 739 (788)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~ 739 (788)
.+++.+.++..|+++.+.....++.+.. ++|+|++
T Consensus 332 --------------------------------------------~~~~~~~~v~~d~~~~~~~~~~~~~~~p-~aVvde~ 366 (386)
T COG4175 332 --------------------------------------------ALIDDVLTVDADTPLSEILARIRQAPCP-VAVVDED 366 (386)
T ss_pred --------------------------------------------cccccccccCccchHHHHHHHHhcCCCc-eeEEcCC
Confidence 1455667889999999999999988765 8999999
Q ss_pred CeEEEEEeHhhhhhhhcC
Q 003889 740 SRVIGLITRKDLLIEDGE 757 (788)
Q Consensus 740 g~lvGIITr~DLl~~~~~ 757 (788)
++++|+|++.++++++.+
T Consensus 367 ~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 367 GRYVGIISRGELLEALAR 384 (386)
T ss_pred CcEEEEecHHHHHHHHhc
Confidence 999999999999987653
No 188
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=96.81 E-value=0.0022 Score=57.77 Aligned_cols=54 Identities=19% Similarity=0.271 Sum_probs=49.5
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHH
Q 003889 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLL 642 (788)
Q Consensus 584 l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~ 642 (788)
.++.++|.++ +.++++++++.++++.+.+++.+.+||+|+ +++++|+|+.+|++
T Consensus 58 ~~v~~i~~~~-~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~----~~~~~Gvvs~~dl~ 111 (113)
T cd04587 58 TLVERVMTPN-PVCATSDTPVLEALHLMVQGKFRHLPVVDK----SGQVVGLLDVTKLT 111 (113)
T ss_pred CCHHHhcCCC-CeEEcCCCCHHHHHHHHHHcCCCcccEECC----CCCEEEEEEHHHhc
Confidence 5688999888 889999999999999999999999999997 68999999999984
No 189
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=96.80 E-value=0.0027 Score=56.70 Aligned_cols=48 Identities=29% Similarity=0.347 Sum_probs=43.7
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhc
Q 003889 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (788)
Q Consensus 708 ~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (788)
++.++++++++.++.+.|.+.+.+++||+|+ ++++|++|++|+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~ 49 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALI 49 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHh
Confidence 3567899999999999999999999999998 99999999999998754
No 190
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=96.79 E-value=0.0037 Score=46.28 Aligned_cols=47 Identities=26% Similarity=0.498 Sum_probs=42.0
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHH
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLL 645 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL 645 (788)
+.++++++++.++.+.+.+.+++.+||+++ +++++|+++.+++.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDE----EGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECC----CCeEEEEEEHHHHHHhh
Confidence 567889999999999999999999999998 68999999999997654
No 191
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=96.79 E-value=0.0029 Score=56.69 Aligned_cols=56 Identities=20% Similarity=0.358 Sum_probs=50.2
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHH
Q 003889 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (788)
Q Consensus 583 ~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~ 643 (788)
..+++++|.++ +.++++++++.++++.|.+.+...+||+|+ ++++.|+|+++++.+
T Consensus 55 ~~~v~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~----~~~~~Gvi~~~di~~ 110 (111)
T cd04611 55 QTPVGEVMSSP-LLTVPADTSLYDARQLMREHGIRHLVVVDD----DGELLGLLSQTDLLQ 110 (111)
T ss_pred CcCHHHhcCCC-ceEECCCCCHHHHHHHHHHcCCeEEEEECC----CCcEEEEEEhHHhhc
Confidence 46788999888 899999999999999999988889999998 789999999999853
No 192
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.78 E-value=0.0026 Score=73.24 Aligned_cols=57 Identities=18% Similarity=0.255 Sum_probs=52.4
Q ss_pred ccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHH
Q 003889 583 QMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVL 644 (788)
Q Consensus 583 ~l~v~diM~~--~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~l 644 (788)
+.+++|+|++ + ++++++++++.++.+.|.+++.+.+||||+ +++++|+|+++|+++.
T Consensus 160 ~~~V~dIMt~~~~-~itv~~d~~l~eAl~lM~e~~i~~LPVVD~----~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 160 DTKVKDFMTPFEK-LVTANEGTTLKEANDIIWDHKLNTLPIVDK----NGNLVYLVFRKDYDSH 218 (502)
T ss_pred CCCHHHHhCCCCC-eEEECCCCcHHHHHHHHHHcCCCEEEEEcC----CCeEEEEEEhHHHHhc
Confidence 4679999996 6 899999999999999999999999999998 7899999999999764
No 193
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=96.78 E-value=0.0029 Score=56.51 Aligned_cols=54 Identities=20% Similarity=0.350 Sum_probs=49.1
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHH
Q 003889 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLL 642 (788)
Q Consensus 584 l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~ 642 (788)
..+.++|.++ +.++++++++.++.+.+.+.+.+.+||+|+ +++++|++++++++
T Consensus 54 ~~v~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~----~g~~~Gvit~~~l~ 107 (109)
T cd04583 54 KSLEDIMLED-VFTVQPDASLRDVLGLVLKRGPKYVPVVDE----DGKLVGLITRSSLV 107 (109)
T ss_pred CcHhHhhcCC-ceEECCCCcHHHHHHHHHHcCCceeeEECC----CCeEEEEEehHHhh
Confidence 4578889888 899999999999999999999999999997 68999999999985
No 194
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=96.78 E-value=0.0031 Score=56.63 Aligned_cols=50 Identities=24% Similarity=0.321 Sum_probs=45.0
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCC-CeEEEEEeHhhhhhhhcC
Q 003889 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIEDGE 757 (788)
Q Consensus 708 ~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~-g~lvGIITr~DLl~~~~~ 757 (788)
+..++++++++.++.+.|.+.+.+.+||+|++ ++++|++|.+|+.+....
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~ 52 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAE 52 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHc
Confidence 34678999999999999999999999999998 999999999999987653
No 195
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=96.76 E-value=0.0036 Score=55.56 Aligned_cols=50 Identities=26% Similarity=0.418 Sum_probs=44.9
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhcC
Q 003889 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (788)
Q Consensus 708 ~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~ 757 (788)
++.++++++++.++.+.|.+.+.+++||+|++++++|+++++|+.+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~ 51 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAE 51 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHh
Confidence 34678899999999999999999999999998999999999999987654
No 196
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=96.75 E-value=0.0026 Score=58.06 Aligned_cols=48 Identities=23% Similarity=0.459 Sum_probs=43.6
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhh
Q 003889 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIED 755 (788)
Q Consensus 708 ~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~ 755 (788)
++.++++++++.++.+.|.+.+.+++||+|++++++|+++.+|+.+..
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~ 49 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDAS 49 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHh
Confidence 456889999999999999999999999999999999999999998654
No 197
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=96.74 E-value=0.0029 Score=56.64 Aligned_cols=55 Identities=16% Similarity=0.250 Sum_probs=47.8
Q ss_pred ccchhhhccCCceEEecC-cccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHH
Q 003889 583 QMTAKEACGAQKVVSLPR-IIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLL 642 (788)
Q Consensus 583 ~l~v~diM~~~~vv~l~~-~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~ 642 (788)
+.++.++|.++ +..+.. ++++.++++.+.+++++.+||+|+ +++++|+|+++|++
T Consensus 53 ~~~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~----~~~~~Gvi~~~dil 108 (110)
T cd04601 53 DKPVSEVMTPE-NLLTTVEGTSLEEALELLHEHKIEKLPVVDD----EGKLKGLITVKDIE 108 (110)
T ss_pred CCCHHHhcccC-ceEEecCCCCHHHHHHHHHHhCCCeeeEEcC----CCCEEEEEEhhhhh
Confidence 35788999876 666666 999999999999999999999997 68999999999985
No 198
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.74 E-value=0.0026 Score=57.28 Aligned_cols=55 Identities=20% Similarity=0.337 Sum_probs=49.6
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHH
Q 003889 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (788)
Q Consensus 584 l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~ 643 (788)
.++.++|.++ +.++++++++.++.+.|.+++...+||+|+ +++++|+|++.|+.+
T Consensus 58 ~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~~~~~G~it~~di~~ 112 (113)
T cd04622 58 TTVGDVMTRG-VVTVTEDDDVDEAARLMREHQVRRLPVVDD----DGRLVGIVSLGDLAR 112 (113)
T ss_pred CCHHHhccCC-ccEECCCCCHHHHHHHHHHcCCCeeeEECC----CCcEEEEEEHHHhhc
Confidence 3588999888 889999999999999999999999999987 689999999999854
No 199
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.73 E-value=0.0033 Score=57.84 Aligned_cols=56 Identities=18% Similarity=0.390 Sum_probs=50.5
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHH
Q 003889 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (788)
Q Consensus 583 ~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~ 643 (788)
..++.++|.++ ++++++++++.++.+.|.+.+.+.+||+|+ +++++|+|+++|+.+
T Consensus 69 ~~~~~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----~~~~~Gvit~~di~~ 124 (125)
T cd04631 69 NEPVRSIMTRN-VITITPDDSIKDAAELMLEKRVGGLPVVDD----DGKLVGIVTERDLLK 124 (125)
T ss_pred hcCHHHHhcCC-ceEeCCCCcHHHHHHHHHHcCCceEEEEcC----CCcEEEEEEHHHhhc
Confidence 45688999888 999999999999999999999999999987 689999999999854
No 200
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.72 E-value=0.0035 Score=56.41 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=43.8
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhc
Q 003889 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (788)
Q Consensus 708 ~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (788)
++.++++++++.++.+.|.+.+.+.+||+|++|+++|+++.+|+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~ 50 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDL 50 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHh
Confidence 3467899999999999999999999999998899999999999987543
No 201
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=96.71 E-value=0.0033 Score=56.47 Aligned_cols=55 Identities=18% Similarity=0.338 Sum_probs=49.7
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHH
Q 003889 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (788)
Q Consensus 583 ~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~ 643 (788)
..++.++|..+ ++++++++++.++++.|.+++.+.+||+|+ ++++|+++.+|+.+
T Consensus 56 ~~~i~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVMTAP-PITIPPDATVFEALLLMLERGIHHLPVVDD-----GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHhCCC-CeEECCCCcHHHHHHHHHHcCCCeeeEeEC-----CEEEEEEEHHHhhc
Confidence 35688999888 999999999999999999999999999986 79999999999864
No 202
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.71 E-value=0.0035 Score=71.84 Aligned_cols=59 Identities=17% Similarity=0.301 Sum_probs=54.0
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhc
Q 003889 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQS 647 (788)
Q Consensus 584 l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~ 647 (788)
..++|+|+++ ++++++++++.++++.|.+++.+.+||+|+ +++++|+|+++||.+....
T Consensus 148 ~~V~diMt~~-~itV~~d~sL~eAl~lM~~~~i~~LPVVD~----~g~lvGIIT~~DIl~~~~~ 206 (479)
T PRK07807 148 TQVRDVMSTD-LVTLPAGTDPREAFDLLEAARVKLAPVVDA----DGRLVGVLTRTGALRATIY 206 (479)
T ss_pred CCHHHhccCC-ceEECCCCcHHHHHHHHHhcCCCEEEEEcC----CCeEEEEEEHHHHHHHhhC
Confidence 4588999998 999999999999999999999999999998 6899999999999886544
No 203
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=96.69 E-value=0.0065 Score=67.60 Aligned_cols=124 Identities=19% Similarity=0.230 Sum_probs=93.9
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccc
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
.+.+.+..+.-++...+.+++++.+||.|.. .+.+..+++-+-+++.+.....+.+.+.
T Consensus 164 ~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~---~~~v~~ilt~~rIl~~l~~~~~~~~~~~------------------ 222 (381)
T KOG1764|consen 164 FVSISPESSLLDAVLLLIKSRIHRVPVIDPE---TGEVLYILTQRRILKFLWLNGRLLPLPS------------------ 222 (381)
T ss_pred ceeecCcHHHHHHHHHHHhCCccceeeeccc---ccceeeehhHHHHHHHHHHhhcccccHH------------------
Confidence 4788889999999999999999999999942 5799999999999887765430000000
Q ss_pred cccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhh
Q 003889 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (788)
Q Consensus 675 ~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (788)
-...++.|+.+. +......+.+++++.+++++|++.++..+||||++|+.+|++++.|+...
T Consensus 223 -----~l~~s~~dl~ig-------------~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l 284 (381)
T KOG1764|consen 223 -----LLSKSLSDLGIG-------------TWSNIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHL 284 (381)
T ss_pred -----HhhCCHHHhCcc-------------hhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhh
Confidence 001123333211 22245788999999999999999999999999999999999999999887
Q ss_pred hcC
Q 003889 755 DGE 757 (788)
Q Consensus 755 ~~~ 757 (788)
..+
T Consensus 285 ~~~ 287 (381)
T KOG1764|consen 285 ARE 287 (381)
T ss_pred hhc
Confidence 554
No 204
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.69 E-value=0.0043 Score=55.70 Aligned_cols=54 Identities=22% Similarity=0.448 Sum_probs=49.0
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHH
Q 003889 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLL 642 (788)
Q Consensus 583 ~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~ 642 (788)
..++.++|.++ +.++++++++.++++.|.+.+.+.+||+|+ ++++|+|+++|+.
T Consensus 55 ~~~~~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-----~~~~Gvvt~~di~ 108 (110)
T cd04595 55 HAPVKDYMSTD-VVTVPPDTPLSEVQELMVEHDIGRVPVVED-----GRLVGIVTRTDLL 108 (110)
T ss_pred cCcHHHHhcCC-CEEECCCCcHHHHHHHHHHcCCCeeEEEeC-----CEEEEEEEhHHhh
Confidence 45788999888 899999999999999999999999999985 7999999999985
No 205
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.66 E-value=0.004 Score=56.89 Aligned_cols=56 Identities=27% Similarity=0.514 Sum_probs=50.4
Q ss_pred cccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHH
Q 003889 582 RQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (788)
Q Consensus 582 ~~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~ 643 (788)
...++.++|.++ ..++++++++.++++.|.+.+.+.+||+|+ ++++|+|+++|+.+
T Consensus 65 ~~~~~~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~Gvi~~~dl~~ 120 (121)
T cd04633 65 RNLPVSDIMTRP-VITIEPDTSVSDVASLMLENNIGGLPVVDD-----GKLVGIVTRTDILR 120 (121)
T ss_pred hccCHHHHccCC-ceEECCCCcHHHHHHHHHHcCCCcccEEEC-----CEEEEEEEHHHhhc
Confidence 456788999888 899999999999999999999999999986 69999999999853
No 206
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=96.65 E-value=0.0046 Score=55.56 Aligned_cols=55 Identities=11% Similarity=0.146 Sum_probs=49.2
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHH
Q 003889 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (788)
Q Consensus 583 ~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~ 643 (788)
..+++++|.++ +.++++++++.++++.|.+++...+||+|+ ++++|+|+++++.+
T Consensus 56 ~~~i~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~G~it~~dl~~ 110 (111)
T cd04589 56 STPVGEIATFP-LITVDPDDFLFNALLLMTRHRIHRVVVREG-----GEVVGVLEQTDLLS 110 (111)
T ss_pred CCCHHHHhCCC-cEEECCCCcHHHHHHHHHHhCccEEEEeeC-----CEEEEEEEhHHhhc
Confidence 34688999888 899999999999999999999999999986 79999999999854
No 207
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=96.64 E-value=0.0042 Score=71.09 Aligned_cols=59 Identities=14% Similarity=0.247 Sum_probs=54.0
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhc
Q 003889 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQS 647 (788)
Q Consensus 584 l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~ 647 (788)
.+++|+|+++ ++++++++++.++++.|.+++.+.+||||+ +++++|+|+++||.+....
T Consensus 146 ~~V~dIMt~~-litv~~~~sL~eAl~lM~~~~i~~LPVVD~----~g~LvGIIT~~DLl~~~~~ 204 (475)
T TIGR01303 146 TQVRDIMSTD-LVTAPADTEPRKAFDLLEHAPRDVAPLVDA----DGTLAGILTRTGALRATIY 204 (475)
T ss_pred CCHHHHccCC-ceEeCCCCcHHHHHHHHHHcCCCEEEEEcC----CCeEEEEEEHHHHHHHHhC
Confidence 4689999998 999999999999999999999999999997 7899999999999886544
No 208
>COG0517 FOG: CBS domain [General function prediction only]
Probab=96.64 E-value=0.0046 Score=55.97 Aligned_cols=52 Identities=19% Similarity=0.384 Sum_probs=48.3
Q ss_pred chhhhccCCceEEecCcccHHHHHHHHhh-CCCCeeEEeeCCCCCCc-EEEEEEeHHHH
Q 003889 585 TAKEACGAQKVVSLPRIIKVADVVSILRT-NKHNGFPVIDHSRNGER-LVIGLVLRSHL 641 (788)
Q Consensus 585 ~v~diM~~~~vv~l~~~~tv~~a~~~L~~-~~~~~fPVVd~~~~~~~-~lvGiI~r~dL 641 (788)
++.++|+.+ ++++.+++++.++.+.|.+ .+.+.+||+|+ ++ +++|++++.|+
T Consensus 63 ~v~~v~~~~-~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~----~~~~lvGivt~~di 116 (117)
T COG0517 63 PVKEVMTKP-VVTVDPDTPLEEALELMVERHKIRRLPVVDD----DGGKLVGIITLSDI 116 (117)
T ss_pred cHHHhccCC-cEEECCCCCHHHHHHHHHHHcCcCeEEEEEC----CCCeEEEEEEHHHc
Confidence 689999988 8999999999999999999 69999999998 65 99999999986
No 209
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=96.61 E-value=0.0042 Score=55.77 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=44.7
Q ss_pred hccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHH
Q 003889 589 ACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (788)
Q Consensus 589 iM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~ 643 (788)
+|.++ +.++++++++.++.+.|.+++.+.+||+++ ++++|+|+++|+.+
T Consensus 56 ~m~~~-~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~-----~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDPS-PFTVSPRTSLEKVHQLFRKLGLRHLLVVDE-----GRLVGIITRKDLLK 104 (105)
T ss_pred hccCC-CceECCCCcHHHHHHHHHHcCCCEEEEEEC-----CeEEEEEEhhhhhc
Confidence 78888 899999999999999999999999999964 89999999999854
No 210
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=96.60 E-value=0.005 Score=55.15 Aligned_cols=55 Identities=20% Similarity=0.293 Sum_probs=49.8
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHH
Q 003889 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (788)
Q Consensus 584 l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~ 643 (788)
.++.++|.++ +.++++++++.++.+.|.+++.+.+||+|+ +++++|+|+..|+.+
T Consensus 56 ~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~~~~~G~it~~di~~ 110 (111)
T cd04612 56 VLVGDVMTRD-PVTASPDETLRDALKRMAERDIGRLPVVDD----SGRLVGIVSRSDLLR 110 (111)
T ss_pred cCHHHhccCC-CeEECCCCCHHHHHHHHHhCCCCeeeEEcC----CCCEEEEEEHHHhhh
Confidence 4678899988 999999999999999999999999999987 689999999999853
No 211
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.60 E-value=0.0052 Score=54.51 Aligned_cols=53 Identities=15% Similarity=0.355 Sum_probs=48.3
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHH
Q 003889 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLL 642 (788)
Q Consensus 584 l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~ 642 (788)
.++.++|.++ +.++++++++.++++.|.+++...+||+|+ ++++|+|+.+++.
T Consensus 51 ~~~~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~G~it~~~l~ 103 (105)
T cd04599 51 RLVADAMTRE-VVTISPEASLLEAKRLMEEKKIERLPVLRE-----RKLVGIITKGTIA 103 (105)
T ss_pred CCHHHHccCC-CEEECCCCCHHHHHHHHHHcCCCEeeEEEC-----CEEEEEEEHHHhc
Confidence 3578899888 899999999999999999999999999986 7999999999984
No 212
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=96.57 E-value=0.0042 Score=55.37 Aligned_cols=53 Identities=15% Similarity=0.149 Sum_probs=47.3
Q ss_pred chhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHH
Q 003889 585 TAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (788)
Q Consensus 585 ~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~ 643 (788)
++.++|.++ ..++++++++.++++.|.+++.+.+||+|+ ++++|+|+++|+..
T Consensus 51 ~~~~~~~~~-~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-----~~~iGvit~~dl~~ 103 (104)
T cd04594 51 DVVDYIVRG-IPYVRLTSTAEEAWEVMMKNKTRWCPVVDD-----GKFKGIVTLDSILD 103 (104)
T ss_pred chhhhhhcC-CcEEcCCCCHHHHHHHHHHcCcceEEEEEC-----CEEEEEEEHHHhhc
Confidence 467788887 889999999999999999999999999975 79999999999853
No 213
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.56 E-value=0.0039 Score=59.33 Aligned_cols=48 Identities=19% Similarity=0.307 Sum_probs=43.9
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhc
Q 003889 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (788)
Q Consensus 708 ~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (788)
++.++++++++.++.+.|++.+...+||+|+ ++++|++|++|+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~ 49 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLV 49 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHH
Confidence 5678999999999999999999999999998 99999999999987654
No 214
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.56 E-value=0.0035 Score=71.69 Aligned_cols=57 Identities=19% Similarity=0.374 Sum_probs=51.4
Q ss_pred ccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCC---CeEEEEEeHhhhhhh
Q 003889 698 YIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA---SRVIGLITRKDLLIE 754 (788)
Q Consensus 698 ~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~---g~lvGIITr~DLl~~ 754 (788)
..++++.|.+++.++++++++.++.++|++.+.+.+||+|++ ++++|+||++|+...
T Consensus 79 Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~ 138 (450)
T TIGR01302 79 VKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFV 138 (450)
T ss_pred hccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhh
Confidence 345667788999999999999999999999999999999987 799999999999753
No 215
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.48 E-value=0.006 Score=55.85 Aligned_cols=55 Identities=20% Similarity=0.312 Sum_probs=50.0
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHH
Q 003889 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (788)
Q Consensus 584 l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~ 643 (788)
.+++++|.++ ++++++++++.++.+.+.+++.+.+||+|+ +++++|+++++|+++
T Consensus 67 ~~~~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~----~~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIMTRD-PITVSPDTPVDEASKLLLENSISCLPVVDE----NGQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhhcCC-CeeeCCCCcHHHHHHHHHHcCCCeEeEECC----CCCEEEEEEHHHhhh
Confidence 4688999888 999999999999999999999999999987 689999999999854
No 216
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.42 E-value=0.0068 Score=55.15 Aligned_cols=47 Identities=28% Similarity=0.340 Sum_probs=41.9
Q ss_pred CCceecCCCCHHHHHHHHHHcC-CCEEEEecCCCeEEEEEeHhhhhhhh
Q 003889 708 SPYVVPEDMSLSKVYNLFRQLG-LRHIFVVPRASRVIGLITRKDLLIED 755 (788)
Q Consensus 708 ~p~tV~~~~sl~~a~~lf~~~g-lr~lpVVd~~g~lvGIITr~DLl~~~ 755 (788)
++.++++++++.++.+.|++.+ .+.+||+|+ |+++|+++.+|+.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~ 49 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELL 49 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHH
Confidence 4567899999999999999887 889999999 9999999999998654
No 217
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=96.36 E-value=0.0074 Score=64.14 Aligned_cols=63 Identities=19% Similarity=0.274 Sum_probs=57.5
Q ss_pred hcccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcc
Q 003889 581 MRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSK 648 (788)
Q Consensus 581 l~~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~ 648 (788)
.++.+...+|+++ +.++.+.+++..+.+.|--.+.+-+||+|+ +.+++|+|+|+|+++.|+..
T Consensus 246 ~~~t~ieKVMtkn-p~tv~~~tsVAsvaq~MiwE~iem~PVv~~----n~~llGiitR~dvlk~lq~~ 308 (432)
T COG4109 246 KPSTTIEKVMTKN-PITVRAKTSVASVAQMMIWEGIEMLPVVDS----NNTLLGIITRQDVLKSLQMI 308 (432)
T ss_pred CCCccHHHHhccC-CeeecccchHHHHHHHHHhccceeeeEEcC----CceEEEEEEHHHHHHHHHHh
Confidence 4567788899998 999999999999999999999999999999 89999999999999988753
No 218
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=96.28 E-value=0.0095 Score=68.80 Aligned_cols=61 Identities=16% Similarity=0.343 Sum_probs=53.8
Q ss_pred ccchhhhccCC-ceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhc
Q 003889 583 QMTAKEACGAQ-KVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQS 647 (788)
Q Consensus 583 ~l~v~diM~~~-~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~ 647 (788)
+.+++|+|+++ +++++++++++.++++.|.+++.+.+||||+ +++++|+|+++|+.+.+..
T Consensus 162 ~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~----~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 162 ETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE----DGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred CCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC----CCeEEEEEEHHHHHHHhhC
Confidence 46789999853 1679999999999999999999999999998 7899999999999887654
No 219
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=96.22 E-value=0.0069 Score=68.37 Aligned_cols=57 Identities=21% Similarity=0.300 Sum_probs=49.6
Q ss_pred CcccccCC--CCceecCCCCHHHHHHHHHHcCCCEEEEecCC-CeEEEEEeHhhhhhhhc
Q 003889 700 DLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIEDG 756 (788)
Q Consensus 700 dl~~~m~~--~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~-g~lvGIITr~DLl~~~~ 756 (788)
.++++|.+ ++++++.+++++++.+.+.+.+.+.+||.+++ ++++|||+.+|++....
T Consensus 192 ~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~ 251 (408)
T TIGR03520 192 DTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN 251 (408)
T ss_pred EeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc
Confidence 34555876 67899999999999999999999999999875 79999999999997543
No 220
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.06 E-value=0.0092 Score=68.84 Aligned_cols=58 Identities=19% Similarity=0.288 Sum_probs=52.8
Q ss_pred ccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHH
Q 003889 583 QMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLL 645 (788)
Q Consensus 583 ~l~v~diM~~--~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL 645 (788)
+.+++|+|++ + ++++++++++.|+.+.|.+++.+.+||+|+ +++++|+|+++|+.+..
T Consensus 158 ~~~V~diMt~~~~-lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~----~g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 158 STPVSEVMTPREK-LVVGNTPISLEEANEVLRESRKGKLPIVND----NGELVALVSRSDLKKNR 217 (495)
T ss_pred CCCHHHhhCCcCC-ceEeCCCCCHHHHHHHHHHcCCCeEEEEcC----CCcEEEEEEehHhhhcc
Confidence 4578999997 7 899999999999999999999999999998 78999999999997653
No 221
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=96.01 E-value=0.0094 Score=64.15 Aligned_cols=56 Identities=14% Similarity=0.239 Sum_probs=49.5
Q ss_pred CcccccCC--CCceecCCCCHHHHHHHHHHcCCCEEEEecCC-CeEEEEEeHhhhhhhh
Q 003889 700 DLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIED 755 (788)
Q Consensus 700 dl~~~m~~--~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~-g~lvGIITr~DLl~~~ 755 (788)
.++++|.+ +..+++++++++++.+.+++.+...+||++++ ++++|+|+.+|++...
T Consensus 68 ~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~ 126 (292)
T PRK15094 68 RVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFM 126 (292)
T ss_pred EEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHh
Confidence 45566887 57899999999999999999999999999876 7999999999998654
No 222
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.86 E-value=0.018 Score=51.18 Aligned_cols=53 Identities=13% Similarity=0.195 Sum_probs=47.0
Q ss_pred chhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHH
Q 003889 585 TAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (788)
Q Consensus 585 ~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~ 643 (788)
.+.++|.++ +.++++++++.++.+.|.+.+.+.+||+|+ ++++|+++.+|+..
T Consensus 53 ~~~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-----~~~~G~it~~d~~~ 105 (106)
T cd04638 53 QLALLMTRD-PPTVSPDDDVKEAAKLMVENNIRRVPVVDD-----GKLVGIVTVADIVR 105 (106)
T ss_pred hHHHHhcCC-CceECCCCCHHHHHHHHHHcCCCEEEEEEC-----CEEEEEEEHHHhhc
Confidence 467888887 889999999999999999999999999986 59999999999853
No 223
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=95.24 E-value=0.026 Score=63.79 Aligned_cols=62 Identities=16% Similarity=0.273 Sum_probs=57.1
Q ss_pred cccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcc
Q 003889 582 RQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSK 648 (788)
Q Consensus 582 ~~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~ 648 (788)
.+..++|+|.++ ++++.++++.+++.+.+++++.-..||||+ +++++|+|+.+|+...++..
T Consensus 194 ~~~~i~~im~~~-~~~V~~~~dqeevA~~~~~ydl~a~PVVd~----~~~LiG~itiDDiidvi~eE 255 (451)
T COG2239 194 PDELLKDLMEDD-VVSVLADDDQEEVARLFEKYDLLAVPVVDE----DNRLIGIITIDDIIDVIEEE 255 (451)
T ss_pred cHhHHHHHhccc-ceeecccCCHHHHHHHHHHhCCeecceECC----CCceeeeeeHHHHHHHHHHH
Confidence 356789999999 999999999999999999999999999999 89999999999999887653
No 224
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=94.71 E-value=0.063 Score=59.60 Aligned_cols=58 Identities=16% Similarity=0.246 Sum_probs=51.5
Q ss_pred chhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcc
Q 003889 585 TAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSK 648 (788)
Q Consensus 585 ~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~ 648 (788)
.+.+.|.++ ..++++++++.+++..+.++++. +||+|+ +++++|+|++.++...+.+.
T Consensus 303 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~----~~~~~g~i~~~~~~~~~~~~ 360 (363)
T TIGR01186 303 GLQDVLIDD-IYTVDAGTLLRETVRKVLKAGIK-VPVVDE----DQRLVGIVTRGSLVDALYDS 360 (363)
T ss_pred chhhhhccC-CceECCCCcHHHHHHHHHhCCCC-EEEECC----CCcEEEEEEHHHHHHHHHhh
Confidence 467778777 88999999999999999999988 999998 79999999999999887653
No 225
>PRK11573 hypothetical protein; Provisional
Probab=93.08 E-value=0.2 Score=56.66 Aligned_cols=56 Identities=5% Similarity=0.056 Sum_probs=47.0
Q ss_pred cccccCC--CCceecCCCCHHHHHHHHHHcCCCEEEEecCC-CeEEEEEeHhhhhhhhc
Q 003889 701 LGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIEDG 756 (788)
Q Consensus 701 l~~~m~~--~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~-g~lvGIITr~DLl~~~~ 756 (788)
++++|.+ +...++.+++++++.+.+++.+...+||.+++ +.++|+|..+|++....
T Consensus 189 v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~ 247 (413)
T PRK11573 189 VDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMT 247 (413)
T ss_pred hhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhh
Confidence 3444654 45788999999999999999999999998765 89999999999997543
No 226
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=93.06 E-value=0.19 Score=56.51 Aligned_cols=59 Identities=15% Similarity=0.248 Sum_probs=50.9
Q ss_pred chhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhccc
Q 003889 585 TAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKV 649 (788)
Q Consensus 585 ~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~ 649 (788)
.+++.+.++ ..++++++++.+++..+.++... +||||+ +++++|+|++.++++.+..+.
T Consensus 338 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~----~~~~~g~~~~~~~~~~~~~~~ 396 (400)
T PRK10070 338 GLDAALIDA-PLAVDAQTPLSELLSHVGQAPCA-VPVVDE----DQQYVGIISKGMLLRALDREG 396 (400)
T ss_pred chhhhhccC-CceeCCCCCHHHHHHHHHhCCCc-EEEECC----CCcEEEEEEHHHHHHHHHhcC
Confidence 466777777 88999999999999999887765 999998 899999999999999886543
No 227
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=92.43 E-value=0.14 Score=55.65 Aligned_cols=57 Identities=18% Similarity=0.303 Sum_probs=52.0
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHH
Q 003889 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVL 644 (788)
Q Consensus 583 ~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~l 644 (788)
...+.|+|+++ .++.+...+++++-++|++++-..+||||+ +++++-+++|.||.+.
T Consensus 170 ~~~~~~vmt~~-~~~~~~gi~l~~~neiL~~~kkGkl~iv~~----~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 170 SLLVSDVMTKN-PVTGAQGITLKEANEILKKIKKGKLPVVDD----KGELVAMLSRTDLMKN 226 (503)
T ss_pred cchhhhhcccc-cccccccccHHHHHHHHHhhhcCCcceecc----CCceeeeeehhhhhhh
Confidence 56788999998 788899999999999999999999999999 8999999999999653
No 228
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=90.89 E-value=0.51 Score=53.79 Aligned_cols=59 Identities=19% Similarity=0.256 Sum_probs=49.5
Q ss_pred cccccCC--CCceecCCCCHHHHHHHHHHcCCCEEEEec-CCCeEEEEEeHhhhhhhhcCCC
Q 003889 701 LGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVP-RASRVIGLITRKDLLIEDGEDS 759 (788)
Q Consensus 701 l~~~m~~--~p~tV~~~~sl~~a~~lf~~~glr~lpVVd-~~g~lvGIITr~DLl~~~~~~~ 759 (788)
++++|.+ +...++.+.+.+++.+.+.+.++..+||.+ +.+.++|+++.||++.+..+..
T Consensus 208 v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~ 269 (429)
T COG1253 208 VREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQ 269 (429)
T ss_pred eeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCc
Confidence 4445754 346788899999999999999999999999 4489999999999999877653
No 229
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=90.80 E-value=0.35 Score=55.45 Aligned_cols=109 Identities=15% Similarity=0.068 Sum_probs=76.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhcCCcCcccchhHHHHHHHHHHHHHHHHHH-------hhhc--CCCchHHHHHHhhh
Q 003889 442 IHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVN-------FYKK--LNIEEGTYALLGAA 512 (788)
Q Consensus 442 ~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~-------~~~~--~~~~~~~~aliGaa 512 (788)
++.+.+.+| +.|.+=.+.+.+.|.-.|---|++=.||+.+..+|+-=.. +++. ..-|-.-+.-+|+|
T Consensus 181 P~ivrl~TL----~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S~~~r~~~r~fr~FrnDrdrRD~VscGaA 256 (762)
T KOG0474|consen 181 PGIVRLRTL----IVKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGSTSLRKDWRWFRYFRNDRDRRDLVSCGAA 256 (762)
T ss_pred cceeehhhh----HHhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCccchhhhhhhhhhhcccchhhhhhhcchH
Confidence 344444444 4588888889999999999999999999999999863211 0110 12456678899999
Q ss_pred hhhhhhcchhHHHHHHHHHHhCCCc---hHHHHHHHHHHHHHHHh
Q 003889 513 SFLGGSMRMTVSLCVIMVEITNNLK---FLPLIMLVLLISKAVGD 554 (788)
Q Consensus 513 a~l~g~~r~pis~~vi~~E~Tg~~~---~l~pi~~~~~~a~~v~~ 554 (788)
|-.+++.|+|+..+.+.+|=..++. ++-=+.++++++..+-+
T Consensus 257 AGVaAAF~APvGGvLFaLEE~aS~Wnq~L~WR~fFss~i~~f~l~ 301 (762)
T KOG0474|consen 257 AGVAAAFRAPVGGVLFALEEGASWWNQALLWRTFFSSAIVAFVLR 301 (762)
T ss_pred HhHHHHhCCCccceEEEechhhHHHHhhHHHHHHHHhHHHHHhHH
Confidence 9999999999999999999654432 33333344444433333
No 230
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=87.10 E-value=1.1 Score=51.66 Aligned_cols=132 Identities=23% Similarity=0.225 Sum_probs=83.1
Q ss_pred hcccchhhhccCC-ceEEecCcccHH-HHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCC
Q 003889 581 MRQMTAKEACGAQ-KVVSLPRIIKVA-DVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPC 658 (788)
Q Consensus 581 l~~l~v~diM~~~-~vv~l~~~~tv~-~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~ 658 (788)
+....++|+|++- .+..+..+.+.. +......+.+++.+||.+.. ...-+|.+....+...+.....+
T Consensus 201 l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~---~~~~i~~~L~~~~~~~~~~~~~~------- 270 (498)
T KOG2118|consen 201 LTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQE---PKNKIGGLLVMNLLRLLQVEVPL------- 270 (498)
T ss_pred HHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCc---ccchhhHHHHhhhhhhhcccccc-------
Confidence 4567899999872 155555555554 45556668899999999872 23333433333332322111000
Q ss_pred CCCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecC
Q 003889 659 DTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR 738 (788)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~ 738 (788)
...++..++.+....+++++++.+..+.|++... |+.|+.+
T Consensus 271 --------------------------------------~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~-H~~~v~~ 311 (498)
T KOG2118|consen 271 --------------------------------------EPLPVSESALLRLPLVPENMPLLDLLNEFQKGKS-HMAVVRN 311 (498)
T ss_pred --------------------------------------ccccchhhhccccccCCCcccHHHHHHHHhhhhc-eeEEEec
Confidence 1123344466677788999999999999997665 5556655
Q ss_pred CCeEEEEEeHhhhhhhhcCCCccc
Q 003889 739 ASRVIGLITRKDLLIEDGEDSTTV 762 (788)
Q Consensus 739 ~g~lvGIITr~DLl~~~~~~~~~~ 762 (788)
...-++++|..|+ +...++...+
T Consensus 312 ~~~~~~~~~l~~~-~~~~~ev~de 334 (498)
T KOG2118|consen 312 GHVDIFVLTLEDL-EEVVKEVEDE 334 (498)
T ss_pred CCcceeeEeccch-hhhcceeccc
Confidence 6888999999998 6555444333
No 231
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=86.67 E-value=0.47 Score=55.50 Aligned_cols=65 Identities=11% Similarity=0.126 Sum_probs=55.3
Q ss_pred ccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCC--CeEEEEEeHhhhhhhhcCCCccc
Q 003889 698 YIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA--SRVIGLITRKDLLIEDGEDSTTV 762 (788)
Q Consensus 698 ~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~--g~lvGIITr~DLl~~~~~~~~~~ 762 (788)
.+.++++|.++...+..+++..|.-+.+....+|.+|+||+. --++|.|.|+.|...+.++...+
T Consensus 587 ~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~ig~~ 653 (931)
T KOG0476|consen 587 TVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRHIGPE 653 (931)
T ss_pred EEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhhcCcc
Confidence 456777899999999999999999988888779999999875 57999999999999877755433
No 232
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=84.01 E-value=0.24 Score=50.27 Aligned_cols=49 Identities=18% Similarity=0.254 Sum_probs=43.9
Q ss_pred ceecCCCCHHHHHHHHHHcCCCEEEEecCC-CeEEEEEeHhhhhhhhcCC
Q 003889 710 YVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIEDGED 758 (788)
Q Consensus 710 ~tV~~~~sl~~a~~lf~~~glr~lpVVd~~-g~lvGIITr~DLl~~~~~~ 758 (788)
.+++.+.++.+.+..+.+......||+.++ +.+.||+-.|||++++...
T Consensus 80 ~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~ 129 (293)
T COG4535 80 ITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSD 129 (293)
T ss_pred eeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCC
Confidence 678889999999999999999999999665 7899999999999987654
No 233
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=83.50 E-value=1.8 Score=45.07 Aligned_cols=42 Identities=31% Similarity=0.310 Sum_probs=35.7
Q ss_pred cCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhh
Q 003889 713 PEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (788)
Q Consensus 713 ~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (788)
.......+++..+...+...+||+|++|+++|.||+.|++++
T Consensus 267 ~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 267 LEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE 308 (309)
T ss_pred ccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence 344555668888888999999999999999999999999864
No 234
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=82.61 E-value=2.6 Score=47.26 Aligned_cols=55 Identities=9% Similarity=0.137 Sum_probs=44.4
Q ss_pred chhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhc
Q 003889 585 TAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQS 647 (788)
Q Consensus 585 ~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~ 647 (788)
+..+ +.++ ..++++++++.+++....++.+ -+||+|+ ++++|+|++.+++..|..
T Consensus 327 ~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-----~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 327 EVES-LEAA-PTVINPDTLMRDVLAARHRTGG-AILLVEN-----GRIVGVIGDDNIYHALLG 381 (382)
T ss_pred chhh-hccc-CcccCCCCcHHHHHHHHhcCCC-CeEEeeC-----CeEEEEEeHHHHHHHHhc
Confidence 3445 4556 7788999999999998888765 5888875 899999999999887653
No 235
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=73.92 E-value=2 Score=46.79 Aligned_cols=52 Identities=15% Similarity=0.131 Sum_probs=44.9
Q ss_pred CceecCCCCHHHHHHHHHHcCCCEEEEecCC-CeEEEEEeHhhhhhhhcCCCc
Q 003889 709 PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIEDGEDST 760 (788)
Q Consensus 709 p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~-g~lvGIITr~DLl~~~~~~~~ 760 (788)
...++-|++.+++.+...+..+..+||-.++ +.++||+..+|+++...+...
T Consensus 212 i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~ 264 (423)
T COG4536 212 IIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE 264 (423)
T ss_pred eeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc
Confidence 4568889999999999999999999998665 679999999999999876553
No 236
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=73.14 E-value=6.5 Score=42.28 Aligned_cols=53 Identities=19% Similarity=0.313 Sum_probs=43.9
Q ss_pred hccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhc
Q 003889 589 ACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQS 647 (788)
Q Consensus 589 iM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~ 647 (788)
.+.++ +.++..++++.+++....+.. ..+||+|+ +++++|+|++.+++.+|.+
T Consensus 332 ~~~~~-~~~v~~d~~~~~~~~~~~~~~-~p~aVvde----~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 332 ALIDD-VLTVDADTPLSEILARIRQAP-CPVAVVDE----DGRYVGIISRGELLEALAR 384 (386)
T ss_pred ccccc-ccccCccchHHHHHHHHhcCC-CceeEEcC----CCcEEEEecHHHHHHHHhc
Confidence 45556 788889999999988877654 47899999 8999999999999988754
No 237
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=64.40 E-value=3.5e+02 Score=33.41 Aligned_cols=83 Identities=18% Similarity=0.281 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCchHHHHHHhhhhhhhhhcchh----------HHHHHHHHHHhCCCchHHHHHHHHHHH
Q 003889 480 IGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMT----------VSLCVIMVEITNNLKFLPLIMLVLLIS 549 (788)
Q Consensus 480 iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~p----------is~~vi~~E~Tg~~~~l~pi~~~~~~a 549 (788)
+||+.|...|.++..-. ...+....+.|-+++++|.+|-. ++..++.+=..++..+. ..+.-+++|
T Consensus 197 ~Gaa~Gv~~Gli~~l~~---~~~~~~~~~~af~GLlaG~fk~~gK~g~~~g~~l~~~il~~y~~~~~~~~-~~~~e~~ia 272 (764)
T TIGR02865 197 AGAAGGVVIGVILGLAN---NANLYQIGVFGFAGLLGGIFKELGKIGTGIGYLVGFLILAFYTQGSVAFS-LALYEALIA 272 (764)
T ss_pred HhHHHHHHHHHHHHhcC---ccHHHHHHHHHHHHHHHHhhccCCcceeeHHHHHHHHHHHHHhccchhHH-HHHHHHHHH
Confidence 47777777777765432 34455666777788888888632 22223322222333322 223455555
Q ss_pred HHHHhhhCccHHHHHHH
Q 003889 550 KAVGDAFSEGLYEEQAH 566 (788)
Q Consensus 550 ~~v~~~~~~~iy~~~l~ 566 (788)
..+--.++..+|+..-+
T Consensus 273 ~~lFll~P~~~~~~~~~ 289 (764)
T TIGR02865 273 TLLFLLIPNKIYKKLER 289 (764)
T ss_pred HHHHHHhhHHHHHHHHh
Confidence 55555558888886654
No 238
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=58.89 E-value=3.5e+02 Score=32.65 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHhccCCcccc
Q 003889 170 TLIGKIFGSIGSVGGGLALGK 190 (788)
Q Consensus 170 ~l~~K~~~~~lsv~sG~svG~ 190 (788)
.+..-++|.+...+.|.++=|
T Consensus 457 ~l~g~iiG~mv~~~m~gpi~k 477 (631)
T PRK09765 457 LLLGAILGFMCSFDLGGPVNK 477 (631)
T ss_pred HHHHHHHHHHHHHcCCCccch
Confidence 345556666666777777666
No 239
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=58.12 E-value=9 Score=25.22 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=20.1
Q ss_pred hhhhHHHHhhhhhhhhhhcCCcc
Q 003889 228 DRRDLVTCGCAAGVAAAFRAPVG 250 (788)
Q Consensus 228 ~~r~li~~GaaAGvaaaF~APig 250 (788)
.||+|+-.+++++.++++.++.+
T Consensus 3 sRR~fLk~~~a~~a~~~~~~~~~ 25 (26)
T PF10518_consen 3 SRRQFLKGGAAAAAAAALGGCAG 25 (26)
T ss_pred cHHHHHHHHHHHHHHHHhccccC
Confidence 48999999999999999988764
No 240
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=50.16 E-value=27 Score=36.69 Aligned_cols=57 Identities=21% Similarity=0.217 Sum_probs=36.9
Q ss_pred cccchhhhccCCceE----EecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHH
Q 003889 582 RQMTAKEACGAQKVV----SLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (788)
Q Consensus 582 ~~l~v~diM~~~~vv----~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~ 643 (788)
...++.|.|.+. .. .+.....-.+++..+...+...+||||+ +++++|.|++.++..
T Consensus 247 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~----~g~~~G~vt~~~l~~ 307 (309)
T COG1125 247 SLVSVADAVRRG-EPADGEPLLEGFVDRDALSDFLARGRSVLPVVDE----DGRPLGTVTRADLLD 307 (309)
T ss_pred chhhHHHhhccc-ccccCCccccchhhHHHHHHHHhcCCceeEEECC----CCcEeeEEEHHHHhh
Confidence 345566666543 11 1122233344555555667788999999 899999999999864
No 241
>PRK02509 hypothetical protein; Provisional
Probab=46.84 E-value=2.7e+02 Score=34.92 Aligned_cols=21 Identities=10% Similarity=0.343 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 003889 317 EELLPMAVIGVIGGLLGALFN 337 (788)
Q Consensus 317 ~~l~~~i~lGv~~Gllg~~f~ 337 (788)
..+|...++.+++.+++.+|.
T Consensus 325 a~LP~~~iL~~ia~l~A~~~~ 345 (973)
T PRK02509 325 VQLPVYTILSILAGIIAFWLL 345 (973)
T ss_pred eHHHHHHHHHHHHHHHHHHHH
Confidence 347777788888888887775
No 242
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=37.72 E-value=44 Score=31.02 Aligned_cols=17 Identities=24% Similarity=0.682 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003889 320 LPMAVIGVIGGLLGALF 336 (788)
Q Consensus 320 ~~~i~lGv~~Gllg~~f 336 (788)
+..|++|+++|++|..+
T Consensus 66 i~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHH
Confidence 36788999999988765
No 243
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=37.60 E-value=57 Score=39.25 Aligned_cols=121 Identities=12% Similarity=0.122 Sum_probs=67.6
Q ss_pred cchhhhccCCceEEecCccc-HHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCC
Q 003889 584 MTAKEACGAQKVVSLPRIIK-VADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRG 662 (788)
Q Consensus 584 l~v~diM~~~~vv~l~~~~t-v~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~ 662 (788)
-...+.+.++ -..+....+ +.++.+.+..++ ..+.+.|+ +|.++.+....++...+.+.. +.+.. .|
T Consensus 41 ~~~~~~~~~~-~~ll~~a~~~l~~l~~~l~~~~-~~~~l~D~----~G~vL~~~g~~~~~~~~~~~~-~~~G~----~w- 108 (638)
T PRK11388 41 VTFASIYRRK-KALLTLGQAALEDAWEYMADRE-CALLILDE----TGCILSRNGDPQTLQQLSALG-FNDGT----YC- 108 (638)
T ss_pred HHHHHHHHHh-HHHHHHHHHHHHHHHHHhcCCC-cEEEEEcC----CceEEEEeCCHHHHHHHHHcC-CccCC----cc-
Confidence 3445555554 333333344 556666676666 68888898 899999998888876655422 21110 01
Q ss_pred CCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeE
Q 003889 663 GSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRV 742 (788)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~l 742 (788)
.+.. .+.. .+ .+ ......|+.|.......+. +........||.|.+|++
T Consensus 109 ------------~E~~--~GTn--ai-----------g~-al~~~~pv~v~g~EH~~~~---~~~~~c~aaPI~d~~G~l 157 (638)
T PRK11388 109 ------------AEGI--IGTN--AL-----------SL-AAISGQPVKTMGDQHFKQA---LHNWAFCATPVFDSKGRL 157 (638)
T ss_pred ------------chhc--cCcC--HH-----------HH-HHhcCCceEEecHHHHHHh---ccCceEEeeEEEcCCCCE
Confidence 0000 0000 00 00 0123556667655544444 344556679999999999
Q ss_pred EEEEe
Q 003889 743 IGLIT 747 (788)
Q Consensus 743 vGIIT 747 (788)
+|+|+
T Consensus 158 iGvl~ 162 (638)
T PRK11388 158 TGTIA 162 (638)
T ss_pred EEEEE
Confidence 99996
No 244
>PRK10478 putative PTS system fructose-like transporter subunit EIIC; Provisional
Probab=30.59 E-value=7.9e+02 Score=27.34 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHhccCCcccc
Q 003889 169 RTLIGKIFGSIGSVGGGLALGK 190 (788)
Q Consensus 169 ~~l~~K~~~~~lsv~sG~svG~ 190 (788)
+.++.-+++...++=-|+|+-|
T Consensus 177 ~~~lG~ilG~m~afDmGGPvNK 198 (359)
T PRK10478 177 IVMLAVIMGLMLAFDMGGPVNK 198 (359)
T ss_pred HHHHHHHHHHHHHhccCCcchH
Confidence 4455666777777777777655
No 245
>PRK01844 hypothetical protein; Provisional
Probab=29.95 E-value=1.2e+02 Score=25.30 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 003889 317 EELLPMAVIGVIGGLLGALFN 337 (788)
Q Consensus 317 ~~l~~~i~lGv~~Gllg~~f~ 337 (788)
+-.+..+++++++|+++.+|.
T Consensus 4 ~~~I~l~I~~li~G~~~Gff~ 24 (72)
T PRK01844 4 WLGILVGVVALVAGVALGFFI 24 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455667888888888776
No 246
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=26.57 E-value=50 Score=24.37 Aligned_cols=20 Identities=35% Similarity=0.526 Sum_probs=10.8
Q ss_pred ChhhhhhHH--HHhhhhhhhhh
Q 003889 225 SDRDRRDLV--TCGCAAGVAAA 244 (788)
Q Consensus 225 ~~~~~r~li--~~GaaAGvaaa 244 (788)
.+..||+|+ +.+++++++++
T Consensus 7 ~~~~RRdFL~~at~~~gavG~~ 28 (41)
T PF10399_consen 7 VDPTRRDFLTIATSAVGAVGAA 28 (41)
T ss_dssp ---HHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHH
Confidence 356788876 55555555554
No 247
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=25.06 E-value=3.2e+02 Score=33.21 Aligned_cols=19 Identities=16% Similarity=0.364 Sum_probs=16.7
Q ss_pred hhhhHHHHhhhhhhhhhhc
Q 003889 228 DRRDLVTCGCAAGVAAAFR 246 (788)
Q Consensus 228 ~~r~li~~GaaAGvaaaF~ 246 (788)
..++|++.|++.-+++.|+
T Consensus 361 ~nqELiAlG~~Ni~sSff~ 379 (665)
T KOG0236|consen 361 SNQELIALGISNILSSFFG 379 (665)
T ss_pred CChHHHHHHHHHHhhhhhc
Confidence 4689999999999988888
No 248
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=24.48 E-value=8.2e+02 Score=29.03 Aligned_cols=142 Identities=13% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhhcccCCcc----eeeehhHHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCC
Q 003889 326 GVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRV----KIIEACVISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPP 401 (788)
Q Consensus 326 Gv~~Gllg~~f~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~~~p~~~ 401 (788)
|++||+++.++. -.+.++.++.++.+.... -++.+++..++++.+.+
T Consensus 315 GFlG~Ilag~la---gyv~~~l~K~~~lP~~l~~l~piliiPllt~li~~~l~~-------------------------- 365 (563)
T PRK10712 315 GFIGGIIAGFLA---GYVAKLISTKLKLPQSMEALKPILIIPLISSLVVGLAMI-------------------------- 365 (563)
T ss_pred hHHHHHHHHHHH---HHHHHHHHHhccCcHHHHhcCceeehhHHHHHHHHHHHH--------------------------
Q ss_pred CCCCccccccccCCCccchhhhhhccCcHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCCcCcccchhHHHHH
Q 003889 402 GMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIG 481 (788)
Q Consensus 402 g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iG 481 (788)
+++=-..-++...++-+...-.+ ...++.|
T Consensus 366 ------------------------------------------------~viGpp~~~l~~~l~~~l~~l~~--~~~~l~G 395 (563)
T PRK10712 366 ------------------------------------------------YLIGKPVAGILEGLTHWLQTMGT--ANAVLLG 395 (563)
T ss_pred ------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHh--hhHHHHH
Q ss_pred HHHHHHHHHHHHHhhhcCCCchHHHHHHhhhhhhhhhcchhHHHHHHHHHHhCCCchHHHHHHHH---HHHHHHHhhhCc
Q 003889 482 STYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVL---LISKAVGDAFSE 558 (788)
Q Consensus 482 a~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg~~~~l~pi~~~~---~~a~~v~~~~~~ 558 (788)
+.+|.+.+ +. +++..+.......+..=.++.++.+.|.|++. -.+..++..+.+
T Consensus 396 ~ilGam~~-----fd------------------mggpvnkaa~~~~~~~la~~g~~p~~a~~~a~~vpp~G~alA~~l~k 452 (563)
T PRK10712 396 AILGGMMC-----TD------------------MGGPVNKAAYAFGVGLLSTQTYAPMAAIMAAGMVPPLAMGLATMVAR 452 (563)
T ss_pred HHHHHHHH-----hC------------------CCCcchhHHHHHHHHHHHhcCchHHHHHHHHHHhHHHHHHHHHHHHH
Q ss_pred cHHHHHHHHcC
Q 003889 559 GLYEEQAHLRG 569 (788)
Q Consensus 559 ~iy~~~l~~kg 569 (788)
..|+...+..+
T Consensus 453 ~kf~k~er~~~ 463 (563)
T PRK10712 453 RKFDKAQQEGG 463 (563)
T ss_pred hcCCHHHHHHH
No 249
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=23.51 E-value=1.4e+02 Score=25.30 Aligned_cols=26 Identities=8% Similarity=0.227 Sum_probs=15.9
Q ss_pred CEEEEecCCCeEEEEEeHhhhhhhhc
Q 003889 731 RHIFVVPRASRVIGLITRKDLLIEDG 756 (788)
Q Consensus 731 r~lpVVd~~g~lvGIITr~DLl~~~~ 756 (788)
+.+-|+|++|..+|++++++-++...
T Consensus 13 ~~VrlI~~~g~~lGv~~~~eAl~~A~ 38 (76)
T PF05198_consen 13 PEVRLIDEDGEQLGVMSLREALRLAK 38 (76)
T ss_dssp SEEEEE-TTS-EEEEEEHHHHHHHHH
T ss_pred CEEEEECCCCcEeceEEHHHHHHHHH
Confidence 45666677777777777777666544
No 250
>COG3817 Predicted membrane protein [Function unknown]
Probab=22.60 E-value=1.4e+02 Score=31.10 Aligned_cols=26 Identities=12% Similarity=0.153 Sum_probs=23.0
Q ss_pred CCchHHHHHHhhhhhhhhhcchhHHH
Q 003889 500 NIEEGTYALLGAASFLGGSMRMTVSL 525 (788)
Q Consensus 500 ~~~~~~~aliGaaa~l~g~~r~pis~ 525 (788)
+.||...+.+||-|-+.|+.-+|+++
T Consensus 245 ganPaV~~AigM~sGfCGTLlTPMAA 270 (313)
T COG3817 245 GANPAVAGAIGMLSGFCGTLLTPMAA 270 (313)
T ss_pred CCChHHHHHHHHHhhhhhhccChhhh
Confidence 78999999999999999998888764
No 251
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=22.29 E-value=2.8e+02 Score=22.45 Aligned_cols=28 Identities=18% Similarity=0.112 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 003889 71 SVVVKWFFALLIGIG-TGLAAVFINISVE 98 (788)
Q Consensus 71 ~~~~~w~~~~liGv~-~Gl~~~~~~~~i~ 98 (788)
..+.+-..+..+|++ +|++++++.....
T Consensus 30 ~Ef~~ia~~~~iG~~i~G~iGf~Ikli~~ 58 (61)
T PRK09400 30 EEFLLVAKVTGLGILLIGLIGFIIYLIMT 58 (61)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777774 5999988886654
No 252
>PRK10490 sensor protein KdpD; Provisional
Probab=21.98 E-value=2.7e+02 Score=35.16 Aligned_cols=38 Identities=21% Similarity=0.091 Sum_probs=22.2
Q ss_pred cCCCceEEeeccCCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 003889 297 FGSGGFIIWDISDGQEDYSFEELLPMAVIGVIGGLLGALFN 337 (788)
Q Consensus 297 f~~~~~~~f~~~~~~~~~~~~~l~~~i~lGv~~Gllg~~f~ 337 (788)
|-..|.+.|.+.+ +-++..+..|+++|++.|.+..-..
T Consensus 462 FF~~P~~Tf~v~~---~~~~~t~~v~l~va~v~~~l~~r~r 499 (895)
T PRK10490 462 FFVAPRGTLAVSD---VQYLLTFAVMLTVGLVIGNLTAGVR 499 (895)
T ss_pred eeCCCceEEEEcC---cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666677652 2235556677777777776655443
No 253
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.50 E-value=2.3e+02 Score=23.53 Aligned_cols=19 Identities=26% Similarity=0.698 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003889 319 LLPMAVIGVIGGLLGALFN 337 (788)
Q Consensus 319 l~~~i~lGv~~Gllg~~f~ 337 (788)
.+..+++++++|++|.+|.
T Consensus 6 ail~ivl~ll~G~~~G~fi 24 (71)
T COG3763 6 AILLIVLALLAGLIGGFFI 24 (71)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3467788888888888775
No 254
>PRK14216 camphor resistance protein CrcB; Provisional
Probab=20.83 E-value=2.1e+02 Score=26.92 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=12.6
Q ss_pred hhhHHHHhhhhhhhhhhcC
Q 003889 229 RRDLVTCGCAAGVAAAFRA 247 (788)
Q Consensus 229 ~r~li~~GaaAGvaaaF~A 247 (788)
.++++..+.+++++|..|-
T Consensus 6 ~~~~l~V~iGG~lGa~~Ry 24 (132)
T PRK14216 6 YRELAAVFAGGALGTLARA 24 (132)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777764
No 255
>COG4129 Predicted membrane protein [Function unknown]
Probab=20.38 E-value=2.3e+02 Score=31.20 Aligned_cols=44 Identities=20% Similarity=0.162 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHhCCCch----HHHHHHHHHHHHHHHhhhCccHHHHHH
Q 003889 522 TVSLCVIMVEITNNLKF----LPLIMLVLLISKAVGDAFSEGLYEEQA 565 (788)
Q Consensus 522 pis~~vi~~E~Tg~~~~----l~pi~~~~~~a~~v~~~~~~~iy~~~l 565 (788)
.+...-++++.+++... +.-+++.+.+|..+.-++..+=|+...
T Consensus 109 ~~~~~~ii~~~~~~~~~~~~r~l~~~vG~~~a~lvn~~~~~~~~~~~~ 156 (332)
T COG4129 109 TVGVLHILVAAMIPLFLIFNRFLLVFVGVGVAFLVNLVMPPPDYELKL 156 (332)
T ss_pred HHHHHHHHHHcccchhHHHHHHHHHHHHHHHHHHHhhhcCCchHHHHH
Confidence 33344445555554331 455678888888888776322244443
No 256
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.19 E-value=2.2e+02 Score=25.73 Aligned_cols=46 Identities=22% Similarity=0.429 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhccCCCccccCCCceEEeeccCCCCCCchhhHHHHHHHHHHHHHHHHH
Q 003889 272 FFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLPMAVIGVIGGLLGAL 335 (788)
Q Consensus 272 ~~~~~va~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~~~~l~~~i~lGv~~Gllg~~ 335 (788)
+.+-.++.++...+++|... .++++.| |-++.|+++|.++|++-.+
T Consensus 48 lssefIsGilVGa~iG~llD---~~agTsP---------------wglIv~lllGf~AG~lnv~ 93 (116)
T COG5336 48 LSSEFISGILVGAGIGWLLD---KFAGTSP---------------WGLIVFLLLGFGAGVLNVL 93 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HhcCCCc---------------HHHHHHHHHHHHHHHHHHH
No 257
>KOG4267 consensus Predicted membrane protein [Function unknown]
Probab=20.11 E-value=1.4e+02 Score=26.93 Aligned_cols=46 Identities=24% Similarity=0.278 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHhhhhhhhhhcch
Q 003889 475 VPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRM 521 (788)
Q Consensus 475 ~P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~ 521 (788)
+||+..|..+|.++|..-.....+... -..+++.|.+++++|++.+
T Consensus 28 i~SL~aGl~~G~l~g~~s~~l~~~~~~-~~~~~l~~~s~~L~gvmg~ 73 (110)
T KOG4267|consen 28 IPSLAAGLLFGALAGYGSYLLSRDKKG-GSLVALGGTSAALLGVMGQ 73 (110)
T ss_pred cchHHHHHHHHHHHHHHHHHhhcCCCc-CchhHHHHHHHHHHHHHhh
Confidence 699999999999888776555422111 2245555567777776643
Done!